Query 013717
Match_columns 437
No_of_seqs 720 out of 3801
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 15:48:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 7E-46 2.4E-50 330.3 39.4 284 89-421 22-320 (321)
2 1vyh_C Platelet-activating fac 100.0 1.3E-45 4.3E-50 340.2 38.7 279 92-421 101-410 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 2.2E-44 7.4E-49 323.8 41.2 285 90-419 46-340 (340)
4 4g56_B MGC81050 protein; prote 100.0 1.1E-44 3.6E-49 327.6 34.3 314 70-429 18-350 (357)
5 1nr0_A Actin interacting prote 100.0 3.1E-43 1.1E-47 340.8 45.4 346 59-421 150-610 (611)
6 4gqb_B Methylosome protein 50; 100.0 2.9E-44 9.8E-49 322.2 34.7 287 96-424 28-333 (344)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.3E-43 7.8E-48 317.7 39.9 303 89-427 5-340 (345)
8 2pbi_B Guanine nucleotide-bind 100.0 5.6E-43 1.9E-47 316.1 40.7 287 90-419 55-354 (354)
9 2ynn_A Coatomer subunit beta'; 100.0 5.9E-43 2E-47 309.4 37.9 284 91-423 5-303 (304)
10 1nr0_A Actin interacting prote 100.0 7.6E-43 2.6E-47 338.1 42.2 315 60-424 22-357 (611)
11 2hes_X YDR267CP; beta-propelle 100.0 8.1E-43 2.8E-47 312.1 38.5 303 90-423 5-329 (330)
12 3iz6_a 40S ribosomal protein R 100.0 1.8E-43 6.1E-48 322.8 33.1 297 89-424 56-377 (380)
13 4ery_A WD repeat-containing pr 100.0 1E-41 3.6E-46 302.9 41.5 282 89-421 13-311 (312)
14 3frx_A Guanine nucleotide-bind 100.0 5.3E-42 1.8E-46 305.3 37.6 286 89-423 7-318 (319)
15 2ymu_A WD-40 repeat protein; u 100.0 1.8E-41 6E-46 327.4 42.5 301 60-419 266-577 (577)
16 1erj_A Transcriptional repress 100.0 2.7E-41 9.2E-46 309.8 40.2 293 93-425 59-392 (393)
17 2xzm_R RACK1; ribosome, transl 100.0 2.2E-41 7.5E-46 304.7 38.8 286 90-424 12-342 (343)
18 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.3E-40 8E-45 309.1 42.2 308 63-423 124-443 (445)
19 4aow_A Guanine nucleotide-bind 100.0 1.3E-40 4.4E-45 299.6 38.9 292 89-424 28-339 (340)
20 1vyh_C Platelet-activating fac 100.0 4E-41 1.4E-45 310.1 36.1 270 58-371 110-410 (410)
21 2ymu_A WD-40 repeat protein; u 100.0 4.1E-40 1.4E-44 317.8 43.9 303 60-421 225-538 (577)
22 2pm9_A Protein WEB1, protein t 100.0 1.1E-41 3.7E-46 315.4 28.7 324 58-423 14-415 (416)
23 3ow8_A WD repeat-containing pr 100.0 2.5E-40 8.7E-45 294.4 35.2 269 60-371 36-320 (321)
24 1gxr_A ESG1, transducin-like e 100.0 2.7E-39 9.2E-44 290.5 41.3 316 58-421 11-336 (337)
25 4gqb_B Methylosome protein 50; 100.0 4.1E-40 1.4E-44 295.2 35.7 274 60-374 34-333 (344)
26 2ynn_A Coatomer subunit beta'; 100.0 3.1E-40 1.1E-44 291.9 34.3 243 139-425 10-262 (304)
27 1got_B GT-beta; complex (GTP-b 100.0 9.8E-40 3.4E-44 293.5 37.1 270 58-369 57-340 (340)
28 1r5m_A SIR4-interacting protei 100.0 6.1E-40 2.1E-44 304.2 35.0 330 57-421 46-424 (425)
29 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-39 5.3E-44 292.7 36.3 285 60-374 20-337 (345)
30 3odt_A Protein DOA1; ubiquitin 100.0 9.5E-39 3.2E-43 283.9 40.7 287 87-427 6-301 (313)
31 1sq9_A Antiviral protein SKI8; 100.0 1.4E-39 5E-44 299.2 34.9 296 90-424 7-397 (397)
32 3vl1_A 26S proteasome regulato 100.0 3E-39 1E-43 299.4 36.0 319 60-422 60-419 (420)
33 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.6E-38 9E-43 295.2 41.7 277 92-425 111-394 (445)
34 3ei3_B DNA damage-binding prot 100.0 1.5E-38 5E-43 291.0 38.4 291 89-422 63-382 (383)
35 1k8k_C P40, ARP2/3 complex 41 100.0 4.6E-39 1.6E-43 293.1 33.8 293 96-425 6-364 (372)
36 1p22_A F-BOX/WD-repeat protein 100.0 7.7E-39 2.6E-43 297.8 35.7 276 96-425 131-417 (435)
37 3zwl_B Eukaryotic translation 100.0 8.8E-38 3E-42 284.1 40.6 284 90-425 23-349 (369)
38 4gga_A P55CDC, cell division c 100.0 3.5E-38 1.2E-42 291.9 38.5 281 100-426 107-399 (420)
39 3dm0_A Maltose-binding peripla 100.0 1.8E-38 6.1E-43 312.5 36.9 281 91-421 374-692 (694)
40 3i2n_A WD repeat-containing pr 100.0 3.2E-38 1.1E-42 285.8 35.8 292 89-424 8-355 (357)
41 3gre_A Serine/threonine-protei 100.0 8E-39 2.8E-43 298.1 32.4 321 63-419 24-437 (437)
42 3v7d_B Cell division control p 100.0 9.5E-38 3.3E-42 293.1 39.6 290 82-426 104-425 (464)
43 3iz6_a 40S ribosomal protein R 100.0 2.6E-39 8.9E-44 295.2 27.8 286 59-374 69-377 (380)
44 4a11_B DNA excision repair pro 100.0 2.3E-38 7.8E-43 292.1 34.5 313 75-427 20-370 (408)
45 4g56_B MGC81050 protein; prote 100.0 9.6E-39 3.3E-43 288.6 30.7 276 59-374 45-345 (357)
46 2pbi_B Guanine nucleotide-bind 100.0 6.7E-38 2.3E-42 282.9 35.5 273 58-369 66-354 (354)
47 3v7d_B Cell division control p 100.0 7.6E-37 2.6E-41 287.0 43.9 326 64-421 128-462 (464)
48 3k26_A Polycomb protein EED; W 100.0 3.1E-38 1.1E-42 286.9 32.9 289 96-421 16-365 (366)
49 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-37 5.5E-42 311.5 41.0 331 60-424 21-607 (902)
50 2j04_B YDR362CP, TAU91; beta p 100.0 3E-39 1E-43 303.7 26.5 318 66-424 171-519 (524)
51 3frx_A Guanine nucleotide-bind 100.0 9.5E-38 3.3E-42 277.9 34.9 271 60-372 21-317 (319)
52 4e54_B DNA damage-binding prot 100.0 3.7E-39 1.3E-43 299.8 26.8 288 96-425 117-433 (435)
53 4ggc_A P55CDC, cell division c 100.0 2.7E-37 9.4E-42 275.1 37.8 279 101-425 28-318 (318)
54 4h5i_A Guanine nucleotide-exch 100.0 9.3E-38 3.2E-42 282.9 34.9 295 98-425 14-346 (365)
55 3dwl_C Actin-related protein 2 100.0 8.3E-39 2.8E-43 292.1 26.9 292 96-420 9-377 (377)
56 1r5m_A SIR4-interacting protei 100.0 1.5E-37 5.1E-42 288.2 34.8 298 80-424 27-363 (425)
57 1erj_A Transcriptional repress 100.0 4.8E-37 1.6E-41 281.5 36.7 272 60-372 68-389 (393)
58 4aez_A CDC20, WD repeat-contai 100.0 5.2E-37 1.8E-41 282.4 36.5 286 96-430 89-388 (401)
59 2hes_X YDR267CP; beta-propelle 100.0 3.2E-37 1.1E-41 275.8 34.0 251 139-423 11-281 (330)
60 1pgu_A Actin interacting prote 100.0 2.7E-36 9.1E-41 293.4 43.4 342 60-422 120-614 (615)
61 2oaj_A Protein SNI1; WD40 repe 100.0 5.1E-37 1.7E-41 307.9 39.3 356 60-420 102-659 (902)
62 2pm7_B Protein transport prote 100.0 6.9E-37 2.4E-41 269.5 34.2 249 139-422 6-285 (297)
63 2pm7_B Protein transport prote 100.0 1.4E-36 4.8E-41 267.6 35.2 258 93-381 3-294 (297)
64 2xzm_R RACK1; ribosome, transl 100.0 1.2E-36 3.9E-41 273.9 35.1 270 65-373 35-341 (343)
65 3sfz_A APAF-1, apoptotic pepti 100.0 6.8E-37 2.3E-41 320.5 36.2 320 58-425 617-1037(1249)
66 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-36 5.2E-41 317.9 38.1 348 60-426 661-1120(1249)
67 2pm9_A Protein WEB1, protein t 100.0 2.9E-37 9.9E-42 285.6 27.2 287 96-426 10-341 (416)
68 3vl1_A 26S proteasome regulato 100.0 1.4E-36 4.8E-41 281.4 31.0 274 99-423 57-366 (420)
69 4ery_A WD repeat-containing pr 100.0 2.4E-35 8.2E-40 261.9 37.5 269 59-371 26-311 (312)
70 1pgu_A Actin interacting prote 100.0 5.5E-36 1.9E-40 291.2 35.9 315 60-424 22-404 (615)
71 3bg1_A Protein SEC13 homolog; 100.0 1E-36 3.4E-41 270.9 24.9 260 96-387 11-308 (316)
72 1p22_A F-BOX/WD-repeat protein 100.0 6.7E-36 2.3E-40 278.0 31.4 272 63-374 138-416 (435)
73 3bg1_A Protein SEC13 homolog; 100.0 3.3E-36 1.1E-40 267.6 25.9 249 139-422 10-293 (316)
74 4aez_A CDC20, WD repeat-contai 100.0 8.9E-35 3E-39 267.4 36.0 270 64-374 99-382 (401)
75 4aow_A Guanine nucleotide-bind 100.0 1.3E-34 4.6E-39 260.2 36.4 275 60-374 42-339 (340)
76 1gxr_A ESG1, transducin-like e 100.0 5.4E-35 1.9E-39 262.4 33.2 281 96-425 7-299 (337)
77 3dwl_C Actin-related protein 2 100.0 3.8E-36 1.3E-40 274.4 25.5 281 58-370 13-377 (377)
78 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-34 4E-39 291.1 37.2 285 91-425 5-305 (814)
79 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-34 4.7E-39 263.5 33.0 283 58-374 10-363 (372)
80 3mkq_A Coatomer beta'-subunit; 100.0 7.4E-34 2.5E-38 285.2 41.3 316 58-422 15-386 (814)
81 3dm0_A Maltose-binding peripla 100.0 2.6E-34 8.8E-39 282.8 36.5 274 60-371 386-692 (694)
82 1yfq_A Cell cycle arrest prote 100.0 2.2E-34 7.4E-39 259.1 33.0 277 96-420 9-322 (342)
83 3f3f_A Nucleoporin SEH1; struc 100.0 6.6E-35 2.2E-39 262.9 29.2 292 96-425 9-340 (351)
84 3odt_A Protein DOA1; ubiquitin 100.0 5.7E-34 1.9E-38 253.0 34.8 268 60-374 22-298 (313)
85 3dw8_B Serine/threonine-protei 100.0 1.5E-34 5.1E-39 270.1 32.0 306 96-421 26-445 (447)
86 3jrp_A Fusion protein of prote 100.0 8.7E-34 3E-38 258.8 36.4 253 91-374 3-289 (379)
87 1sq9_A Antiviral protein SKI8; 100.0 2.4E-34 8.1E-39 264.4 31.6 287 60-373 20-396 (397)
88 4h5i_A Guanine nucleotide-exch 100.0 7.1E-34 2.4E-38 257.4 33.1 280 58-372 16-343 (365)
89 3zwl_B Eukaryotic translation 100.0 7.1E-33 2.4E-37 251.7 39.7 281 58-373 34-347 (369)
90 3jrp_A Fusion protein of prote 100.0 4.3E-34 1.5E-38 260.8 31.5 250 139-423 8-288 (379)
91 4gga_A P55CDC, cell division c 100.0 3.3E-33 1.1E-37 258.5 37.5 276 70-391 117-411 (420)
92 2aq5_A Coronin-1A; WD40 repeat 100.0 5.2E-34 1.8E-38 262.5 31.1 286 101-424 37-344 (402)
93 3k26_A Polycomb protein EED; W 100.0 1.9E-34 6.6E-39 261.8 27.1 280 59-371 21-365 (366)
94 3mmy_A MRNA export factor; mRN 100.0 9.8E-34 3.3E-38 257.3 31.6 289 89-424 29-348 (368)
95 3ei3_B DNA damage-binding prot 100.0 2E-33 7E-38 256.9 32.8 271 60-372 77-382 (383)
96 3i2n_A WD repeat-containing pr 100.0 2.1E-33 7.1E-38 254.2 31.2 286 58-374 20-355 (357)
97 4e54_B DNA damage-binding prot 100.0 3.6E-34 1.2E-38 266.1 26.4 273 60-374 123-432 (435)
98 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-32 4E-37 248.7 33.5 284 91-427 11-341 (355)
99 2j04_B YDR362CP, TAU91; beta p 100.0 7.2E-34 2.5E-38 267.2 25.7 268 88-423 123-429 (524)
100 1yfq_A Cell cycle arrest prote 100.0 2E-32 6.9E-37 246.3 33.5 270 60-370 15-322 (342)
101 4ggc_A P55CDC, cell division c 100.0 1.9E-31 6.4E-36 237.3 36.8 267 62-373 31-316 (318)
102 4a11_B DNA excision repair pro 100.0 3.2E-32 1.1E-36 251.0 32.7 313 59-421 46-404 (408)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-31 4.2E-36 250.3 36.4 286 98-423 4-392 (450)
104 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-32 4.7E-37 252.3 28.7 263 96-421 13-296 (588)
105 3gre_A Serine/threonine-protei 100.0 7.1E-33 2.4E-37 257.9 26.8 278 59-369 66-437 (437)
106 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-32 8.2E-37 251.4 27.3 279 62-374 40-344 (402)
107 2w18_A PALB2, fancn, partner a 100.0 9.9E-32 3.4E-36 231.7 28.9 280 101-421 42-356 (356)
108 2xyi_A Probable histone-bindin 100.0 7.5E-32 2.6E-36 250.1 29.9 258 139-424 125-412 (430)
109 3jro_A Fusion protein of prote 100.0 5.1E-32 1.8E-36 268.0 27.8 251 93-374 3-287 (753)
110 3jro_A Fusion protein of prote 100.0 4.9E-32 1.7E-36 268.1 27.0 251 139-424 6-287 (753)
111 4gq1_A NUP37; propeller, trans 100.0 6.8E-32 2.3E-36 247.1 25.9 233 155-421 104-388 (393)
112 3dw8_B Serine/threonine-protei 100.0 8.4E-32 2.9E-36 251.4 25.2 255 140-425 26-376 (447)
113 3mmy_A MRNA export factor; mRN 100.0 2.5E-30 8.4E-35 234.9 33.8 274 58-373 41-347 (368)
114 2xyi_A Probable histone-bindin 100.0 4.8E-31 1.6E-35 244.7 28.9 250 94-372 124-410 (430)
115 3f3f_A Nucleoporin SEH1; struc 100.0 3.2E-30 1.1E-34 232.2 32.3 299 59-385 14-350 (351)
116 3lrv_A PRE-mRNA-splicing facto 100.0 2.8E-31 9.5E-36 238.8 23.5 269 108-421 48-332 (343)
117 2j04_A TAU60, YPL007P, hypothe 100.0 9.8E-31 3.4E-35 240.1 25.8 285 60-411 19-350 (588)
118 3bws_A Protein LP49; two-domai 100.0 3.9E-29 1.4E-33 232.3 34.1 299 74-422 95-432 (433)
119 3vu4_A KMHSV2; beta-propeller 100.0 8.6E-29 2.9E-33 223.3 30.8 270 58-374 21-338 (355)
120 1l0q_A Surface layer protein; 100.0 2.5E-27 8.6E-32 217.1 39.7 303 70-425 4-345 (391)
121 3lrv_A PRE-mRNA-splicing facto 100.0 2E-29 6.8E-34 226.7 24.4 263 65-371 45-332 (343)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.7E-28 2.6E-32 224.6 35.6 240 97-373 101-392 (450)
123 4gq1_A NUP37; propeller, trans 100.0 3.9E-29 1.3E-33 228.8 26.2 225 108-371 101-388 (393)
124 1l0q_A Surface layer protein; 100.0 2.9E-27 9.8E-32 216.7 36.9 260 109-424 3-277 (391)
125 3bws_A Protein LP49; two-domai 100.0 7.2E-26 2.5E-30 210.3 34.5 266 60-372 126-432 (433)
126 2w18_A PALB2, fancn, partner a 100.0 9.7E-26 3.3E-30 194.5 29.4 257 72-370 57-355 (356)
127 1nir_A Nitrite reductase; hemo 99.9 4.2E-24 1.4E-28 202.5 32.9 322 64-425 145-517 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.7E-24 9.1E-29 197.9 30.3 270 76-398 87-409 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.1E-24 7.2E-29 198.6 27.2 272 98-424 62-389 (415)
130 1nir_A Nitrite reductase; hemo 99.9 2.6E-23 8.8E-28 197.1 31.8 276 106-426 145-462 (543)
131 1ri6_A Putative isomerase YBHE 99.9 5.2E-22 1.8E-26 178.1 30.9 270 111-421 8-307 (343)
132 1ri6_A Putative isomerase YBHE 99.9 2E-21 6.9E-26 174.3 33.2 294 71-399 8-335 (343)
133 3u4y_A Uncharacterized protein 99.9 3.2E-21 1.1E-25 172.3 31.9 273 108-424 10-306 (331)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.4E-21 4.9E-26 193.9 30.6 330 60-423 40-460 (741)
135 2ecf_A Dipeptidyl peptidase IV 99.9 3.9E-21 1.4E-25 190.7 31.4 279 98-422 36-413 (741)
136 1k32_A Tricorn protease; prote 99.9 3.9E-21 1.3E-25 197.3 30.1 310 60-424 56-463 (1045)
137 2z3z_A Dipeptidyl aminopeptida 99.9 4.3E-21 1.5E-25 189.4 29.2 317 68-424 35-437 (706)
138 3hfq_A Uncharacterized protein 99.9 2.1E-20 7.1E-25 168.1 30.2 266 118-421 17-316 (347)
139 2ojh_A Uncharacterized protein 99.9 2.9E-21 1E-25 169.3 23.1 249 114-412 18-292 (297)
140 1pby_B Quinohemoprotein amine 99.9 1.2E-20 4.2E-25 168.7 26.3 266 109-425 2-313 (337)
141 3vgz_A Uncharacterized protein 99.9 1.6E-19 5.4E-24 162.7 33.4 265 96-399 38-326 (353)
142 1xfd_A DIP, dipeptidyl aminope 99.9 2.4E-20 8.3E-25 184.6 29.2 314 60-413 20-432 (723)
143 2z3z_A Dipeptidyl aminopeptida 99.9 7E-21 2.4E-25 187.9 24.4 282 101-424 28-393 (706)
144 1k32_A Tricorn protease; prote 99.9 8.9E-20 3E-24 187.2 32.3 305 61-424 249-639 (1045)
145 2oit_A Nucleoporin 214KDA; NH2 99.9 5E-19 1.7E-23 163.3 33.7 206 98-329 36-279 (434)
146 3o4h_A Acylamino-acid-releasin 99.9 4.3E-20 1.5E-24 178.0 26.6 264 97-421 20-314 (582)
147 2oit_A Nucleoporin 214KDA; NH2 99.9 4.5E-20 1.6E-24 170.2 25.3 254 142-420 36-331 (434)
148 3u4y_A Uncharacterized protein 99.9 4.9E-19 1.7E-23 158.0 31.4 268 68-373 10-305 (331)
149 2ojh_A Uncharacterized protein 99.9 1.5E-19 5.1E-24 158.4 26.3 249 73-363 17-293 (297)
150 3hfq_A Uncharacterized protein 99.9 9E-19 3.1E-23 157.4 30.3 273 76-371 14-316 (347)
151 1pby_B Quinohemoprotein amine 99.9 2.3E-19 7.9E-24 160.4 26.0 268 70-385 3-320 (337)
152 1xfd_A DIP, dipeptidyl aminope 99.9 7.2E-20 2.5E-24 181.2 24.2 279 99-423 17-394 (723)
153 3vgz_A Uncharacterized protein 99.9 6.7E-19 2.3E-23 158.6 27.5 241 141-425 39-306 (353)
154 3scy_A Hypothetical bacterial 99.8 1.6E-17 5.4E-22 150.2 33.1 266 118-421 28-336 (361)
155 3scy_A Hypothetical bacterial 99.8 4.2E-17 1.4E-21 147.4 34.3 295 75-395 24-360 (361)
156 1z68_A Fibroblast activation p 99.8 3.9E-18 1.3E-22 168.6 25.8 324 61-424 20-445 (719)
157 1jmx_B Amine dehydrogenase; ox 99.8 7.1E-18 2.4E-22 151.6 21.4 232 149-425 6-328 (349)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.7E-17 1.9E-21 146.6 27.1 274 110-423 4-342 (365)
159 3pe7_A Oligogalacturonate lyas 99.8 1E-16 3.6E-21 146.2 28.5 284 89-423 20-383 (388)
160 1jmx_B Amine dehydrogenase; ox 99.8 1.5E-16 5.2E-21 142.8 27.0 273 63-383 6-333 (349)
161 3o4h_A Acylamino-acid-releasin 99.8 1E-17 3.5E-22 161.4 20.3 227 141-420 20-274 (582)
162 1z68_A Fibroblast activation p 99.8 2.2E-17 7.6E-22 163.2 20.6 273 103-422 20-391 (719)
163 1jof_A Carboxy-CIS,CIS-muconat 99.7 4E-15 1.4E-19 134.4 29.6 247 96-373 37-342 (365)
164 1q7f_A NHL, brain tumor CG1071 99.7 4.8E-14 1.6E-18 122.8 33.3 244 139-426 26-284 (286)
165 4a5s_A Dipeptidyl peptidase 4 99.7 3.2E-15 1.1E-19 147.9 28.5 338 60-423 20-450 (740)
166 3azo_A Aminopeptidase; POP fam 99.7 1.2E-14 4.2E-19 142.2 30.4 311 61-420 28-409 (662)
167 1q7f_A NHL, brain tumor CG1071 99.7 1.6E-13 5.6E-18 119.4 34.1 238 96-373 27-281 (286)
168 3fvz_A Peptidyl-glycine alpha- 99.7 1.8E-14 6.3E-19 128.0 28.5 199 211-424 89-324 (329)
169 4a5s_A Dipeptidyl peptidase 4 99.7 9.1E-15 3.1E-19 144.7 28.1 277 98-421 16-397 (740)
170 2oiz_A Aromatic amine dehydrog 99.7 3.7E-14 1.3E-18 127.6 27.0 276 76-399 29-360 (361)
171 3azo_A Aminopeptidase; POP fam 99.7 1.9E-14 6.5E-19 140.8 27.1 283 96-421 21-366 (662)
172 3c5m_A Oligogalacturonate lyas 99.7 3.9E-15 1.3E-19 136.1 20.2 285 101-422 38-382 (396)
173 2oiz_A Aromatic amine dehydrog 99.7 4E-14 1.4E-18 127.3 26.3 261 118-423 32-335 (361)
174 2gop_A Trilobed protease; beta 99.7 1.8E-13 6E-18 122.7 29.3 252 100-421 16-330 (347)
175 2dg1_A DRP35, lactonase; beta 99.7 6.2E-13 2.1E-17 118.5 32.6 263 60-362 9-300 (333)
176 2dg1_A DRP35, lactonase; beta 99.6 5E-13 1.7E-17 119.1 30.2 273 99-423 6-315 (333)
177 3dsm_A Uncharacterized protein 99.6 1.1E-12 3.9E-17 116.3 30.8 260 117-424 16-303 (328)
178 3dsm_A Uncharacterized protein 99.6 4.9E-13 1.7E-17 118.7 27.2 259 75-374 14-303 (328)
179 3fvz_A Peptidyl-glycine alpha- 99.6 1.2E-12 4.2E-17 116.3 29.8 244 98-372 23-322 (329)
180 3pe7_A Oligogalacturonate lyas 99.6 8.4E-14 2.9E-18 126.9 22.8 265 62-371 41-381 (388)
181 1rwi_B Serine/threonine-protei 99.6 1.7E-12 5.8E-17 111.9 26.6 237 144-426 25-268 (270)
182 2z2n_A Virginiamycin B lyase; 99.6 1.1E-10 3.9E-15 101.9 38.2 273 96-423 12-296 (299)
183 1qks_A Cytochrome CD1 nitrite 99.6 1.1E-11 3.9E-16 117.1 33.5 271 108-423 167-478 (567)
184 2xdw_A Prolyl endopeptidase; a 99.6 4.4E-12 1.5E-16 124.9 31.8 240 140-424 122-416 (710)
185 2bkl_A Prolyl endopeptidase; m 99.6 9.9E-13 3.4E-17 129.2 27.1 274 105-424 76-399 (695)
186 1qks_A Cytochrome CD1 nitrite 99.6 2.4E-11 8.2E-16 115.0 34.0 326 66-425 165-541 (567)
187 3no2_A Uncharacterized protein 99.5 4.4E-12 1.5E-16 109.2 25.5 203 152-399 4-225 (276)
188 3e5z_A Putative gluconolactona 99.5 8.8E-12 3E-16 109.0 27.3 231 141-423 26-287 (296)
189 3q7m_A Lipoprotein YFGL, BAMB; 99.5 4E-11 1.4E-15 108.7 31.8 301 69-419 54-375 (376)
190 2z2n_A Virginiamycin B lyase; 99.5 4.7E-10 1.6E-14 97.9 35.1 269 60-373 18-296 (299)
191 1xip_A Nucleoporin NUP159; bet 99.5 1.7E-12 5.8E-17 115.7 19.4 172 100-314 39-230 (388)
192 3c5m_A Oligogalacturonate lyas 99.5 2E-12 6.7E-17 118.1 20.4 226 62-331 41-332 (396)
193 2gop_A Trilobed protease; beta 99.5 4.4E-11 1.5E-15 107.0 28.8 246 76-388 41-342 (347)
194 1rwi_B Serine/threonine-protei 99.5 1.7E-11 5.7E-16 105.6 25.1 232 100-374 25-266 (270)
195 3e5z_A Putative gluconolactona 99.5 1.7E-11 5.9E-16 107.1 25.4 233 96-372 25-286 (296)
196 1yr2_A Prolyl oligopeptidase; 99.5 3.2E-11 1.1E-15 119.3 27.4 276 106-424 116-443 (741)
197 2qc5_A Streptogramin B lactona 99.4 2.8E-09 9.5E-14 93.0 36.1 271 96-420 17-298 (300)
198 3no2_A Uncharacterized protein 99.4 2.5E-11 8.6E-16 104.5 21.6 186 223-425 6-198 (276)
199 3q7m_A Lipoprotein YFGL, BAMB; 99.4 4.8E-10 1.7E-14 101.5 30.9 269 106-425 51-340 (376)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 5E-10 1.7E-14 98.6 28.6 244 96-373 15-300 (314)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 7.4E-10 2.5E-14 97.5 28.8 242 142-423 17-300 (314)
202 2xdw_A Prolyl endopeptidase; a 99.4 9.7E-11 3.3E-15 115.4 25.4 204 211-424 123-370 (710)
203 3g4e_A Regucalcin; six bladed 99.4 1.3E-09 4.6E-14 95.0 29.9 227 141-411 11-262 (297)
204 3hxj_A Pyrrolo-quinoline quino 99.4 7.3E-11 2.5E-15 104.8 20.8 291 71-425 33-327 (330)
205 2bkl_A Prolyl endopeptidase; m 99.4 2.5E-11 8.4E-16 119.2 19.1 199 210-421 118-348 (695)
206 2qc5_A Streptogramin B lactona 99.3 1.8E-08 6.2E-13 87.8 33.6 264 61-370 24-298 (300)
207 2mad_H Methylamine dehydrogena 99.3 6E-09 2E-13 93.7 30.4 264 118-428 48-356 (373)
208 1xip_A Nucleoporin NUP159; bet 99.3 6.4E-11 2.2E-15 105.6 17.1 164 214-398 39-225 (388)
209 3g4e_A Regucalcin; six bladed 99.3 1.6E-08 5.6E-13 88.1 31.2 218 97-353 11-250 (297)
210 2ghs_A AGR_C_1268P; regucalcin 99.3 9.5E-09 3.2E-13 90.9 29.9 220 145-412 51-293 (326)
211 3sjl_D Methylamine dehydrogena 99.3 1.9E-09 6.6E-14 95.7 24.7 275 108-425 44-366 (386)
212 3hrp_A Uncharacterized protein 99.3 1.8E-09 6.2E-14 98.5 24.9 234 143-421 131-409 (409)
213 1kb0_A Quinohemoprotein alcoho 99.3 2.2E-08 7.5E-13 97.3 33.2 336 71-422 80-567 (677)
214 1yiq_A Quinohemoprotein alcoho 99.3 1.5E-08 5E-13 98.8 31.9 327 70-410 72-537 (689)
215 1yr2_A Prolyl oligopeptidase; 99.2 1.2E-09 4.1E-14 108.0 23.1 199 211-421 161-392 (741)
216 3hrp_A Uncharacterized protein 99.2 1.4E-08 4.7E-13 92.6 27.7 232 99-370 131-408 (409)
217 3sjl_D Methylamine dehydrogena 99.2 2.9E-08 9.8E-13 88.2 28.0 262 77-383 58-371 (386)
218 2mad_H Methylamine dehydrogena 99.2 4E-07 1.4E-11 81.8 36.0 253 79-374 48-352 (373)
219 1kb0_A Quinohemoprotein alcoho 99.2 2.4E-09 8.2E-14 104.1 23.0 284 107-425 76-510 (677)
220 1yiq_A Quinohemoprotein alcoho 99.2 6E-09 2.1E-13 101.5 25.3 284 107-425 69-508 (689)
221 3c75_H MADH, methylamine dehyd 99.2 5.1E-09 1.8E-13 94.7 22.5 268 117-426 99-406 (426)
222 3hxj_A Pyrrolo-quinoline quino 99.2 9.6E-10 3.3E-14 97.5 17.2 256 102-420 23-282 (330)
223 4a2l_A BT_4663, two-component 99.2 7.7E-07 2.6E-11 88.8 39.1 291 97-423 213-527 (795)
224 3dr2_A Exported gluconolactona 99.2 2.5E-08 8.7E-13 87.2 24.8 220 142-413 44-298 (305)
225 2ghs_A AGR_C_1268P; regucalcin 99.1 1E-07 3.6E-12 84.1 28.6 210 101-352 51-279 (326)
226 3iuj_A Prolyl endopeptidase; h 99.1 1.7E-08 5.7E-13 98.9 22.1 239 140-424 126-407 (693)
227 2qe8_A Uncharacterized protein 99.1 2.3E-08 8E-13 89.1 21.2 266 99-413 17-312 (343)
228 2hz6_A Endoplasmic reticulum t 99.1 5.9E-11 2E-15 106.9 4.3 179 150-374 7-194 (369)
229 3iuj_A Prolyl endopeptidase; h 99.1 1.6E-08 5.6E-13 99.0 21.5 201 211-423 127-360 (693)
230 3dr2_A Exported gluconolactona 99.1 1.2E-07 4E-12 83.0 24.9 222 96-363 42-298 (305)
231 2hz6_A Endoplasmic reticulum t 99.0 4.5E-11 1.5E-15 107.6 2.0 186 220-425 7-195 (369)
232 4a2l_A BT_4663, two-component 99.0 4E-06 1.4E-10 83.6 36.0 280 101-423 175-481 (795)
233 1npe_A Nidogen, entactin; glyc 99.0 2E-06 7E-11 73.4 28.9 249 108-398 1-262 (267)
234 3c75_H MADH, methylamine dehyd 98.9 6.2E-07 2.1E-11 81.2 25.4 260 78-382 99-409 (426)
235 3v9f_A Two-component system se 98.9 4.9E-06 1.7E-10 82.8 33.7 295 99-422 211-524 (781)
236 1kv9_A Type II quinohemoprotei 98.9 4E-06 1.4E-10 81.5 32.1 303 71-384 69-497 (668)
237 3v9f_A Two-component system se 98.9 1.9E-06 6.4E-11 85.8 30.1 288 98-423 257-569 (781)
238 2iwa_A Glutamine cyclotransfer 98.9 1.6E-06 5.4E-11 72.9 24.8 197 214-424 22-239 (266)
239 1mda_H Methylamine dehydrogena 98.9 1.8E-07 6.2E-12 83.2 19.6 224 155-425 35-349 (368)
240 2ad6_A Methanol dehydrogenase 98.9 8.8E-06 3E-10 77.4 32.5 268 104-383 111-502 (571)
241 1kv9_A Type II quinohemoprotei 98.9 3E-07 1E-11 89.3 22.8 199 107-332 65-337 (668)
242 2ece_A 462AA long hypothetical 98.8 4.3E-06 1.5E-10 75.0 26.4 223 108-360 95-399 (462)
243 1w6s_A Methanol dehydrogenase 98.8 3.1E-05 1.1E-09 73.6 34.0 287 111-409 124-534 (599)
244 2iwa_A Glutamine cyclotransfer 98.8 8E-06 2.7E-10 68.6 26.4 200 90-328 10-237 (266)
245 3nol_A Glutamine cyclotransfer 98.8 7.1E-06 2.4E-10 68.1 24.5 188 90-317 32-244 (262)
246 3nok_A Glutaminyl cyclase; bet 98.8 3E-06 1E-10 70.3 21.9 186 90-316 44-253 (268)
247 2ece_A 462AA long hypothetical 98.8 1.7E-05 5.9E-10 71.2 28.0 185 217-410 142-399 (462)
248 3nol_A Glutamine cyclotransfer 98.7 3.8E-06 1.3E-10 69.7 21.3 181 215-411 45-245 (262)
249 3mbr_X Glutamine cyclotransfer 98.7 3E-05 1E-09 63.8 25.7 188 90-317 10-223 (243)
250 2xbg_A YCF48-like protein; pho 98.7 0.00012 4E-09 64.4 34.6 280 96-420 33-320 (327)
251 2ad6_A Methanol dehydrogenase 98.7 1.3E-05 4.4E-10 76.2 26.9 200 107-334 61-341 (571)
252 3nok_A Glutaminyl cyclase; bet 98.7 5.5E-06 1.9E-10 68.7 21.1 183 213-411 55-255 (268)
253 3mbr_X Glutamine cyclotransfer 98.7 3.5E-05 1.2E-09 63.4 25.1 192 213-421 21-232 (243)
254 2qe8_A Uncharacterized protein 98.7 5.9E-06 2E-10 73.4 21.7 225 96-325 64-318 (343)
255 1flg_A Protein (quinoprotein e 98.6 0.00015 5.1E-09 69.0 32.1 165 232-411 291-549 (582)
256 1w6s_A Methanol dehydrogenase 98.6 2.3E-05 8E-10 74.5 26.5 201 107-335 61-349 (599)
257 1mda_H Methylamine dehydrogena 98.6 1.5E-06 5.1E-11 77.3 17.0 261 79-395 47-365 (368)
258 1fwx_A Nitrous oxide reductase 98.6 5.8E-06 2E-10 76.8 20.4 200 155-388 105-384 (595)
259 1flg_A Protein (quinoprotein e 98.6 2.5E-05 8.5E-10 74.4 25.3 202 107-334 67-361 (582)
260 2fp8_A Strictosidine synthase; 98.6 6.2E-05 2.1E-09 66.1 26.2 249 144-423 20-314 (322)
261 2fp8_A Strictosidine synthase; 98.6 7.5E-05 2.6E-09 65.6 25.8 241 99-372 19-313 (322)
262 1npe_A Nidogen, entactin; glyc 98.5 0.00035 1.2E-08 59.3 28.5 193 214-424 37-240 (267)
263 1fwx_A Nitrous oxide reductase 98.5 1.1E-05 3.9E-10 75.0 18.6 210 107-328 100-361 (595)
264 3v65_B Low-density lipoprotein 98.5 0.00066 2.3E-08 61.1 29.6 231 100-374 78-320 (386)
265 3v64_C Agrin; beta propeller, 98.4 0.00075 2.5E-08 59.8 32.1 232 99-374 34-277 (349)
266 3v65_B Low-density lipoprotein 98.4 0.0011 3.8E-08 59.7 29.3 194 213-423 116-319 (386)
267 1k3i_A Galactose oxidase precu 98.3 8.2E-05 2.8E-09 72.3 22.0 267 108-411 198-530 (656)
268 1ijq_A LDL receptor, low-densi 98.3 0.0013 4.4E-08 57.4 33.0 223 110-374 3-240 (316)
269 1k3i_A Galactose oxidase precu 98.3 0.00012 4E-09 71.2 22.3 255 79-361 220-530 (656)
270 3ii7_A Kelch-like protein 7; p 98.3 0.00082 2.8E-08 58.4 25.5 234 110-384 14-283 (306)
271 3v64_C Agrin; beta propeller, 98.3 0.0019 6.5E-08 57.2 29.1 194 213-423 73-276 (349)
272 2xbg_A YCF48-like protein; pho 98.2 0.0021 7.3E-08 56.3 28.1 231 142-415 35-272 (327)
273 3p5b_L Low density lipoprotein 98.2 0.0027 9.3E-08 57.4 34.5 247 108-395 83-340 (400)
274 3sov_A LRP-6, low-density lipo 98.2 0.0022 7.7E-08 55.8 28.3 224 110-374 6-240 (318)
275 3ei3_A DNA damage-binding prot 98.2 0.0078 2.7E-07 61.9 35.4 73 97-173 512-593 (1158)
276 1ijq_A LDL receptor, low-densi 98.2 0.0024 8.2E-08 55.7 30.9 197 213-424 30-240 (316)
277 3tc9_A Hypothetical hydrolase; 98.2 0.0014 4.7E-08 59.9 25.0 234 143-421 137-429 (430)
278 3ei3_A DNA damage-binding prot 98.2 0.01 3.5E-07 61.0 41.4 176 233-424 808-1001(1158)
279 2vpj_A Kelch-like protein 12; 98.2 0.0014 4.9E-08 56.6 23.9 222 118-379 32-284 (301)
280 2xe4_A Oligopeptidase B; hydro 98.1 0.00049 1.7E-08 67.9 22.5 193 214-421 175-397 (751)
281 3qqz_A Putative uncharacterize 98.1 0.0035 1.2E-07 52.3 25.9 200 209-418 23-249 (255)
282 3p5b_L Low density lipoprotein 98.0 0.007 2.4E-07 54.7 31.9 199 211-424 110-322 (400)
283 3m0c_C LDL receptor, low-densi 98.0 0.014 4.8E-07 57.4 31.8 235 102-374 388-634 (791)
284 1zgk_A Kelch-like ECH-associat 98.0 0.0025 8.5E-08 55.4 22.7 234 107-381 24-295 (308)
285 2uvk_A YJHT; unknown function, 98.0 0.0021 7.2E-08 57.2 22.6 235 107-374 19-344 (357)
286 4hw6_A Hypothetical protein, I 98.0 0.0093 3.2E-07 54.5 27.0 236 143-421 139-432 (433)
287 2xn4_A Kelch-like protein 2; s 98.0 0.0028 9.5E-08 54.8 22.5 217 118-374 31-278 (302)
288 2vpj_A Kelch-like protein 12; 97.9 0.0066 2.3E-07 52.4 23.8 189 219-423 60-279 (301)
289 2p9w_A MAL S 1 allergenic prot 97.9 0.0082 2.8E-07 51.7 23.0 205 142-372 12-265 (334)
290 2p4o_A Hypothetical protein; p 97.8 0.011 3.9E-07 51.1 23.8 198 213-421 32-241 (306)
291 2p4o_A Hypothetical protein; p 97.8 0.012 4.1E-07 50.9 28.0 217 143-399 32-270 (306)
292 3ii7_A Kelch-like protein 7; p 97.8 0.0089 3E-07 51.7 23.1 190 218-423 52-273 (306)
293 3m0c_C LDL receptor, low-densi 97.8 0.03 1E-06 55.2 30.5 198 211-423 422-633 (791)
294 2xn4_A Kelch-like protein 2; s 97.8 0.01 3.5E-07 51.2 23.2 190 219-424 59-278 (302)
295 3ott_A Two-component system se 97.8 0.033 1.1E-06 55.1 35.4 266 98-418 21-303 (758)
296 3amr_A 3-phytase; beta-propell 97.8 0.014 4.8E-07 50.7 24.8 191 223-421 41-262 (355)
297 3sov_A LRP-6, low-density lipo 97.8 0.016 5.6E-07 50.3 27.3 194 214-424 36-240 (318)
298 4asc_A Kelch repeat and BTB do 97.7 0.016 5.6E-07 50.3 23.1 225 111-374 7-279 (315)
299 4a0p_A LRP6, LRP-6, low-densit 97.7 0.04 1.4E-06 52.9 32.7 222 109-374 7-239 (628)
300 1n7d_A LDL receptor, low-densi 97.7 0.00022 7.4E-09 69.5 11.1 223 110-374 379-616 (699)
301 2xzh_A Clathrin heavy chain 1; 97.6 0.026 8.8E-07 48.3 31.8 254 118-424 50-334 (365)
302 2xe4_A Oligopeptidase B; hydro 97.6 0.026 8.8E-07 55.7 24.2 197 140-370 170-398 (751)
303 2woz_A Kelch repeat and BTB do 97.5 0.037 1.3E-06 48.1 23.1 219 117-374 24-289 (318)
304 4hw6_A Hypothetical protein, I 97.5 0.023 7.8E-07 51.9 21.4 151 214-371 140-303 (433)
305 1bpo_A Protein (clathrin); cla 97.5 0.05 1.7E-06 48.5 30.7 254 118-424 49-333 (494)
306 3kya_A Putative phosphatase; s 97.4 0.075 2.5E-06 48.9 26.5 244 144-425 140-478 (496)
307 3qqz_A Putative uncharacterize 97.4 0.041 1.4E-06 45.8 26.2 203 94-326 21-251 (255)
308 1zgk_A Kelch-like ECH-associat 97.4 0.035 1.2E-06 48.0 20.1 188 220-423 69-288 (308)
309 1n7d_A LDL receptor, low-densi 97.3 0.00093 3.2E-08 65.1 10.5 195 214-423 407-615 (699)
310 2xzh_A Clathrin heavy chain 1; 97.3 0.063 2.2E-06 45.9 28.9 190 220-425 74-293 (365)
311 3tc9_A Hypothetical hydrolase; 97.3 0.025 8.7E-07 51.5 18.9 154 254-422 138-301 (430)
312 3ott_A Two-component system se 97.2 0.2 6.8E-06 49.5 34.5 273 98-421 62-351 (758)
313 1bpo_A Protein (clathrin); cla 97.2 0.11 3.8E-06 46.3 28.8 181 230-425 84-292 (494)
314 2p9w_A MAL S 1 allergenic prot 97.1 0.11 3.8E-06 44.7 20.4 156 214-372 14-215 (334)
315 3pbp_A Nucleoporin NUP82; beta 97.1 0.048 1.6E-06 48.5 17.3 144 223-367 33-207 (452)
316 3sre_A PON1, serum paraoxonase 97.0 0.065 2.2E-06 47.1 18.1 158 254-422 51-252 (355)
317 2woz_A Kelch repeat and BTB do 97.0 0.13 4.6E-06 44.5 21.1 174 234-423 80-288 (318)
318 4asc_A Kelch repeat and BTB do 97.0 0.13 4.6E-06 44.4 23.1 185 108-330 46-279 (315)
319 2uvk_A YJHT; unknown function, 97.0 0.15 5.2E-06 45.0 22.3 142 273-425 168-345 (357)
320 2ism_A Putative oxidoreductase 97.0 0.15 5.2E-06 44.9 23.8 236 143-413 31-337 (352)
321 3amr_A 3-phytase; beta-propell 96.9 0.18 6.3E-06 43.8 24.3 183 155-372 43-263 (355)
322 3qhy_B Beta-lactamase inhibito 96.8 0.2 7E-06 42.5 22.3 226 143-425 24-249 (282)
323 3a9g_A Putative uncharacterize 96.7 0.27 9.3E-06 43.3 23.9 226 143-399 29-324 (354)
324 1xi4_A Clathrin heavy chain; a 96.6 0.19 6.5E-06 52.0 19.1 191 220-425 73-292 (1630)
325 3sre_A PON1, serum paraoxonase 96.6 0.35 1.2E-05 42.4 21.8 177 215-399 52-279 (355)
326 1xi4_A Clathrin heavy chain; a 96.5 0.24 8.3E-06 51.2 19.7 254 118-424 49-333 (1630)
327 3pbp_A Nucleoporin NUP82; beta 96.5 0.44 1.5E-05 42.5 19.9 149 262-418 30-208 (452)
328 3s94_A LRP-6, low-density lipo 96.5 0.65 2.2E-05 44.4 34.7 216 77-331 17-246 (619)
329 3kya_A Putative phosphatase; s 96.1 0.82 2.8E-05 42.1 19.5 155 254-422 140-341 (496)
330 3a9g_A Putative uncharacterize 96.0 0.75 2.6E-05 40.5 18.7 74 252-329 28-115 (354)
331 1tl2_A L10, protein (tachylect 96.0 0.23 7.7E-06 39.9 13.0 187 223-423 5-209 (236)
332 2be1_A Serine/threonine-protei 95.9 0.22 7.6E-06 43.3 13.8 145 223-369 11-181 (339)
333 2zwa_A Leucine carboxyl methyl 95.5 1.6 5.4E-05 42.5 20.0 193 220-423 396-636 (695)
334 2be1_A Serine/threonine-protei 95.5 0.73 2.5E-05 40.0 15.8 185 154-374 12-233 (339)
335 1tl2_A L10, protein (tachylect 95.5 0.75 2.6E-05 37.0 14.6 151 143-321 41-203 (236)
336 3s94_A LRP-6, low-density lipo 95.5 1.9 6.3E-05 41.3 37.9 303 99-423 171-511 (619)
337 2zwa_A Leucine carboxyl methyl 94.7 3.4 0.00012 40.1 19.8 197 106-330 396-637 (695)
338 4a0p_A LRP6, LRP-6, low-densit 94.4 3.7 0.00013 39.3 43.4 194 214-424 341-551 (628)
339 3qhy_B Beta-lactamase inhibito 93.9 2.6 8.9E-05 35.6 26.1 224 99-374 24-248 (282)
340 2ism_A Putative oxidoreductase 93.4 3.8 0.00013 35.9 24.4 70 99-171 31-114 (352)
341 2g8s_A Glucose/sorbosone dehyd 92.6 4.9 0.00017 35.2 27.1 63 353-421 289-351 (353)
342 1cru_A Protein (soluble quinop 91.5 8 0.00027 35.3 21.5 63 252-316 26-98 (454)
343 3kci_A Probable E3 ubiquitin-p 90.9 8.2 0.00028 34.3 31.4 284 67-372 9-345 (389)
344 3das_A Putative oxidoreductase 90.3 8.6 0.00029 33.5 28.0 242 142-413 31-330 (347)
345 3das_A Putative oxidoreductase 89.9 9.4 0.00032 33.2 21.6 170 248-424 27-235 (347)
346 3sbq_A Nitrous-oxide reductase 89.1 14 0.00048 34.4 14.5 95 233-328 299-408 (638)
347 3mvd_K Regulator of chromosome 87.0 17 0.00057 32.7 36.4 280 71-372 36-374 (423)
348 1cru_A Protein (soluble quinop 86.7 18 0.00063 32.9 15.8 105 212-316 26-162 (454)
349 3kci_A Probable E3 ubiquitin-p 86.7 16 0.00056 32.3 32.3 253 144-422 54-345 (389)
350 2g8s_A Glucose/sorbosone dehyd 86.6 16 0.00053 31.9 19.3 75 252-328 17-107 (353)
351 3mvd_K Regulator of chromosome 85.9 19 0.00065 32.3 33.9 253 143-422 75-374 (423)
352 3sbq_A Nitrous-oxide reductase 85.9 3.3 0.00011 38.4 8.6 76 296-372 321-408 (638)
353 4gq2_M Nucleoporin NUP120; bet 83.6 36 0.0012 34.5 15.9 36 214-249 237-274 (950)
354 2wg3_C Hedgehog-interacting pr 80.7 33 0.0011 31.3 13.3 55 253-308 14-79 (463)
355 4d9s_A UVB-resistance protein 78.9 35 0.0012 30.4 38.6 293 99-421 16-356 (406)
356 4gq2_M Nucleoporin NUP120; bet 78.6 59 0.002 32.9 16.9 32 388-424 237-268 (950)
357 3f7f_A Nucleoporin NUP120; nuc 78.3 18 0.0006 34.9 10.8 38 213-250 222-259 (729)
358 2wg3_C Hedgehog-interacting pr 76.5 45 0.0015 30.3 14.5 30 298-327 14-44 (463)
359 3uc1_A DNA gyrase subunit A; D 74.1 42 0.0014 28.9 21.0 231 69-327 4-278 (327)
360 1sqj_A OXG-RCBH, oligoxylogluc 70.6 86 0.0029 30.9 15.9 145 252-399 14-181 (789)
361 3b7f_A Glycosyl hydrolase, BNR 70.2 57 0.0019 28.7 20.5 181 223-413 23-254 (394)
362 3q6k_A 43.2 kDa salivary prote 69.3 60 0.002 28.6 19.0 138 233-372 124-306 (381)
363 4d9s_A UVB-resistance protein 65.7 73 0.0025 28.3 35.6 279 71-372 28-357 (406)
364 3s25_A Hypothetical 7-bladed b 57.4 87 0.003 26.4 21.9 125 232-374 88-218 (302)
365 3f7f_A Nucleoporin NUP120; nuc 57.3 37 0.0013 32.8 8.2 37 99-135 222-259 (729)
366 3of7_A Regulator of chromosome 50.3 1.5E+02 0.0051 26.9 31.9 200 212-422 147-405 (473)
367 4fhn_B Nucleoporin NUP120; pro 48.7 55 0.0019 34.0 8.6 27 223-249 250-276 (1139)
368 1a12_A RCC1, regulator of chro 48.6 1.4E+02 0.0049 26.3 35.3 251 143-422 59-365 (413)
369 4fhn_B Nucleoporin NUP120; pro 46.3 46 0.0016 34.5 7.6 32 388-424 239-270 (1139)
370 4a9v_A PHOX; hydrolase, beta-p 45.6 1.4E+02 0.0046 28.1 9.7 59 254-316 477-549 (592)
371 1zi0_A DNA gyrase subunit A; b 44.7 1.4E+02 0.0049 25.2 21.6 191 223-422 4-226 (307)
372 1suu_A DNA gyrase subunit A; t 44.5 1.5E+02 0.005 25.2 20.6 191 223-422 9-231 (312)
373 3al9_A Plexin-A2; beta-propell 44.1 61 0.0021 30.2 7.4 70 254-323 401-476 (539)
374 3b7f_A Glycosyl hydrolase, BNR 42.7 1.7E+02 0.0058 25.5 29.9 175 213-395 177-391 (394)
375 3no0_A DNA gyrase subunit A; D 42.4 1.5E+02 0.005 24.6 15.3 147 223-372 81-246 (276)
376 3no0_A DNA gyrase subunit A; D 42.0 1.5E+02 0.0051 24.6 20.0 196 99-327 24-245 (276)
377 1q47_A Semaphorin 3A; beta pro 41.8 1.2E+02 0.0041 27.9 8.8 70 254-323 405-487 (495)
378 2zux_A YESW protein; beta-prop 39.9 2.4E+02 0.0082 26.4 15.9 24 251-274 177-202 (591)
379 3of7_A Regulator of chromosome 39.2 2.2E+02 0.0075 25.8 32.2 209 143-372 148-405 (473)
380 3zwu_A Alkaline phosphatase PH 38.1 1.5E+02 0.005 28.0 8.9 57 255-315 478-548 (592)
381 1zvt_A Topoisomerase IV subuni 37.5 1.7E+02 0.0058 23.9 13.2 146 224-372 4-163 (256)
382 1sqj_A OXG-RCBH, oligoxylogluc 34.5 3.4E+02 0.012 26.6 22.2 165 211-379 13-207 (789)
383 1a12_A RCC1, regulator of chro 31.3 2.7E+02 0.0093 24.5 34.3 278 72-372 21-365 (413)
384 3ol2_B Plexin-B1; beta-propell 29.7 2E+02 0.0068 26.6 8.2 69 254-323 388-461 (528)
385 4gz8_A Semaphorin-3A; multi-do 28.1 3E+02 0.01 26.4 9.3 73 254-327 413-498 (667)
386 3uc1_A DNA gyrase subunit A; D 25.7 3.1E+02 0.011 23.4 23.9 184 223-413 110-321 (327)
387 2cn3_A Xyloglucanase, beta-1,4 25.0 4.8E+02 0.016 25.3 14.5 165 253-423 23-230 (737)
388 3oky_B Putative uncharacterize 23.2 4.7E+02 0.016 24.5 9.8 70 254-323 404-495 (565)
389 1olz_A Semaphorin 4D; developm 22.7 2.2E+02 0.0074 27.4 7.4 67 254-323 398-477 (663)
390 3oky_A Plexin-A2; transmembran 22.0 1.7E+02 0.0057 28.2 6.4 69 255-323 401-475 (681)
391 4a9v_A PHOX; hydrolase, beta-p 21.2 4.8E+02 0.016 24.5 9.0 57 213-269 476-548 (592)
392 3s25_A Hypothetical 7-bladed b 21.2 3.7E+02 0.012 22.5 30.0 171 217-419 110-290 (302)
393 2zux_A YESW protein; beta-prop 20.7 5.3E+02 0.018 24.2 19.3 88 233-333 293-405 (591)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7e-46 Score=330.26 Aligned_cols=284 Identities=20% Similarity=0.262 Sum_probs=249.4
Q ss_pred ceeeeec-CccCCeEEEEee------CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEE
Q 013717 89 CINSVQL-GHKLPIGCIAVH------HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTA 158 (437)
Q Consensus 89 ~~~~~~~-~h~~~V~~l~~~------~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 158 (437)
..+...+ +|.+.|.+++|+ +++|++|+.| +|+|||+..+.......+ .+|...|.+++|+++. ++++
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l---~gh~~~v~~~~~~~~~~~l~s~ 98 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL---EGHQLGVVSVDISHTLPIAASS 98 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE---CCCSSCEEEEEECSSSSEEEEE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee---ccCCCCEEEEEECCCCCEEEEE
Confidence 3444555 999999999996 4689999999 999999987655444444 6899999999999765 9999
Q ss_pred ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEE
Q 013717 159 HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKI 236 (437)
Q Consensus 159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i 236 (437)
+.|++|++||+.+++....+ ..|...+.+++|+| ++|++|+.||.|++
T Consensus 99 s~D~~i~lWd~~~~~~~~~~------------------------------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i 148 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSI------------------------------DAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEE------------------------------ECCTTCCCCEEECTTSSEEEEECTTSEEEE
T ss_pred eCCCcEEEEECCCCCEEEEE------------------------------eCCCccEEEEEECCCCCEEEEEcCCCcEEE
Confidence 99999999999987644333 24777888999998 89999999999999
Q ss_pred EECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE
Q 013717 237 WRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG 315 (437)
Q Consensus 237 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (437)
||+++++....+..+...|.+++|+|+++ |++|+.||.|++||++.. +.+..+.+|...|.+++|+|++++|++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spd~~~l~s~ 224 (321)
T 3ow8_A 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG----KLLHTLEGHAMPIRSLTFSPDSQLLVTA 224 (321)
T ss_dssp EETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCCCEEEECTTSCEEEEE
T ss_pred EEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC----cEEEEEcccCCceeEEEEcCCCCEEEEE
Confidence 99999999999988999999999999999 999999999999998754 4677888999999999999999999999
Q ss_pred eCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717 316 ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT 393 (437)
Q Consensus 316 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 393 (437)
+.|+.|++||++.++ ....+.+|...|.+++|+++ +|++++.|+.|++||+.+++ ++..+.+|...|.+++
T Consensus 225 s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~h~~~v~~v~ 297 (321)
T 3ow8_A 225 SDDGYIKIYDVQHAN----LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT---CVHTFFDHQDQVWGVK 297 (321)
T ss_dssp CTTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEE
T ss_pred cCCCeEEEEECCCcc----eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE---EEEEEcCCCCcEEEEE
Confidence 999999999998765 44567889999999998755 99999999999999999866 8889999999999999
Q ss_pred EEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 394 AVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 394 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
|+|++. +|++++.||.|++||+.
T Consensus 298 ~s~~g~-----~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 298 YNGNGS-----KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECTTSS-----EEEEEETTCCEEEEECC
T ss_pred ECCCCC-----EEEEEeCCCeEEEEeCC
Confidence 999874 79999999999999964
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-45 Score=340.21 Aligned_cols=279 Identities=25% Similarity=0.483 Sum_probs=245.7
Q ss_pred eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEE
Q 013717 92 SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIR 165 (437)
Q Consensus 92 ~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~ 165 (437)
...+ +|.++|++++|+ +++|++|+.| .|+|||+.+++ ....+ .+|...|.+++|+++. |++|+.|++|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--~~~~l---~~h~~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTL---KGHTDSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEE---CCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEE---eccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 4455 999999999999 8999999999 99999999853 34444 5799999999999765 99999999999
Q ss_pred EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc
Q 013717 166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR 243 (437)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 243 (437)
+||+.+++....+ .+|...|.+++|+| +++++|+.|++|++||+++++
T Consensus 176 iwd~~~~~~~~~~------------------------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~ 225 (410)
T 1vyh_C 176 LWDFQGFECIRTM------------------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225 (410)
T ss_dssp EEETTSSCEEECC------------------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred EEeCCCCceeEEE------------------------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 9999876543332 36999999999998 899999999999999999999
Q ss_pred eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC--------------
Q 013717 244 CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-------------- 308 (437)
Q Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------- 308 (437)
++..+.+|...|.++.++|++. +++|+.||.|++||+.... ....+.+|...|.+++|+|+
T Consensus 226 ~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 301 (410)
T 1vyh_C 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGSET 301 (410)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-
T ss_pred EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc----eeeEecCCCceEEEEEEcCcccccchhhhccccc
Confidence 9999999999999999999998 9999999999999987543 56678889999999999996
Q ss_pred ------CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeee
Q 013717 309 ------GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLA 380 (437)
Q Consensus 309 ------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~ 380 (437)
|.+|++|+.|+.|++||++++. ....+.+|...|.++.++++ +|++|+.||.|++||+.+++ ++.
T Consensus 302 ~~~~~~g~~l~sgs~D~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~---~~~ 374 (410)
T 1vyh_C 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---CMK 374 (410)
T ss_dssp ------CCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---CCE
T ss_pred cccCCCCCEEEEEeCCCeEEEEECCCCc----eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eEE
Confidence 6789999999999999998776 44456789999999988754 99999999999999998766 788
Q ss_pred eecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 381 VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 381 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
.+.+|...|++++|+|++. +|++|+.||+|++|+++
T Consensus 375 ~~~~h~~~v~~l~~~~~~~-----~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 375 TLNAHEHFVTSLDFHKTAP-----YVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECCSSCEEEEEECSSSS-----CEEEEETTSEEEEEC--
T ss_pred EEcCCCCcEEEEEEcCCCC-----EEEEEeCCCcEEEEeCC
Confidence 8999999999999999985 69999999999999864
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-44 Score=323.85 Aligned_cols=285 Identities=18% Similarity=0.262 Sum_probs=243.2
Q ss_pred eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717 90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK 163 (437)
Q Consensus 90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 163 (437)
.....+ +|.+.|.+++|+ +++|++|+.| .|++||..++. ....+ ..|...|.+++|+++. |++++.|+.
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~--~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN--KVHAI---PLRSSWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--EEEEE---ECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC--cceEe---ecCCccEEEEEECCCCCEEEEEeCCCe
Confidence 345566 999999999999 8999999999 99999998853 33343 4689999999999765 999999999
Q ss_pred EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCc
Q 013717 164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDL 242 (437)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 242 (437)
|++|++.+.+.... ....+.+|...|.++.|.+ +.+++++.|+.|++||++++
T Consensus 121 v~iw~~~~~~~~~~--------------------------~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~ 174 (340)
T 1got_B 121 CSIYNLKTREGNVR--------------------------VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174 (340)
T ss_dssp EEEEETTTCSBSCE--------------------------EEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred EEEEECccCCCcce--------------------------eEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC
Confidence 99999986532111 0123357999999999987 88999999999999999999
Q ss_pred ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcE
Q 013717 243 RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSI 321 (437)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (437)
+.+..+.+|...|.+++|+|++. +++|+.||.|++||++.. .....+.+|...|.+++|+|++++|++|+.||+|
T Consensus 175 ~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v 250 (340)
T 1got_B 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcE
Confidence 99999999999999999999998 999999999999998754 3677788999999999999999999999999999
Q ss_pred EEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717 322 LVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG 399 (437)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 399 (437)
++||++.++....+ ....+...|.+++++++ +|++|+.||.|++||+.+++ .+..+.+|.++|.+++|+|++.
T Consensus 251 ~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~s~dg~ 325 (340)
T 1got_B 251 RLFDLRADQELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAGHDNRVSCLGVTDDGM 325 (340)
T ss_dssp EEEETTTTEEEEEE--CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECTTSS
T ss_pred EEEECCCCcEEEEE--ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc---EeeEeecCCCcEEEEEEcCCCC
Confidence 99999876533222 12334456888887754 99999999999999998866 7788999999999999999885
Q ss_pred CCceEEEEEecCCCcEEEEe
Q 013717 400 QNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 400 ~~~~~~l~s~~~dg~i~iw~ 419 (437)
+|++|+.||.|++||
T Consensus 326 -----~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 -----AVATGSWDSFLKIWN 340 (340)
T ss_dssp -----CEEEEETTSCEEEEC
T ss_pred -----EEEEEcCCccEEecC
Confidence 799999999999996
No 4
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-44 Score=327.60 Aligned_cols=314 Identities=17% Similarity=0.159 Sum_probs=227.5
Q ss_pred cccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEec------C-eEEEEeCCCCceeeeeccccCC
Q 013717 70 SLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASS------H-EINVYDRTGTTWTSINTFNDND 139 (437)
Q Consensus 70 ~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~------d-~v~vwd~~~~~~~~~~~~~~~~ 139 (437)
.+...+.+.....|++.. ... +|...|.+++|+ |++||+|+. | .|++|+..++...... .....
T Consensus 18 ~~~~~~g~~~~~~w~~p~-----~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~-~~~~~ 91 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPV-----TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL-CTAGV 91 (357)
T ss_dssp ---------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG-CSEEE
T ss_pred eEEecCCCccccccCCCC-----CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE-ecccC
Confidence 344445556667776533 223 899999999999 999999997 6 7999988775321111 11123
Q ss_pred CCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 140 SSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 140 ~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
+|...|.+++|+++. +++++.||+|++||+.+++...... ....+|...|+++
T Consensus 92 ~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~--------------------------~~~~~h~~~V~~v 145 (357)
T 4g56_B 92 QTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNK--------------------------FAKYEHDDIVKTL 145 (357)
T ss_dssp ECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCC--------------------------EEECCCSSCEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEe--------------------------eccCCCCCCEEEE
Confidence 588999999999766 8899999999999998876433221 1123699999999
Q ss_pred EeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEee
Q 013717 219 AVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLE 294 (437)
Q Consensus 219 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 294 (437)
+|+| ++|++|+.||.|++||+++++.+..+..|...|++++|++++. +++++.||.|++||++...... ...+.
T Consensus 146 ~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~--~~~~~ 223 (357)
T 4g56_B 146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT--RIDFC 223 (357)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC--BCCCT
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee--eeeec
Confidence 9998 8999999999999999999999999999999999999999875 8999999999999987654221 12334
Q ss_pred CccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeC
Q 013717 295 KHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQR 370 (437)
Q Consensus 295 ~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~ 370 (437)
.+...+.+++|+|+ +.+|++|+.|+.|++||+++++.. ..+.+|...|.+++|+++ +|++|+.||+|+|||+
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA----QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC----EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECCCCcEe----EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 56778999999997 568899999999999999887643 345778999999998743 8999999999999999
Q ss_pred CCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCCC
Q 013717 371 GSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSP 429 (437)
Q Consensus 371 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 429 (437)
++++ ++. ..+|.+.|++|+|+|.++. +|++++.||+|++|++.........
T Consensus 300 ~~~~---~~~-~~~H~~~V~~vafsP~d~~----~l~s~s~Dg~v~iW~~~~~~~~~~~ 350 (357)
T 4g56_B 300 DFSE---VFR-DLSHRDFVTGVAWSPLDHS----KFTTVGWDHKVLHHHLPSEGRTENL 350 (357)
T ss_dssp TSCE---EEE-ECCCSSCEEEEEECSSSTT----EEEEEETTSCEEEEECC--------
T ss_pred CCCc---EeE-ECCCCCCEEEEEEeCCCCC----EEEEEcCCCeEEEEECCCCCccccc
Confidence 8765 444 4579999999999985433 8999999999999999876544433
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.1e-43 Score=340.84 Aligned_cols=346 Identities=19% Similarity=0.290 Sum_probs=263.9
Q ss_pred ccceeeccccc-cccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717 59 NLSLQTLPSVP-SLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN 133 (437)
Q Consensus 59 ~~~~~~~~~~~-~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~ 133 (437)
..++.|.|..+ .+++.+.|+++++|+... .++...+ +|.+.|.+++|+ +++|++|+.| .|++||+.+++. ..
T Consensus 150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~--~~ 226 (611)
T 1nr0_A 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK--TG 226 (611)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EE
T ss_pred ceEEEECCCCCeEEEEEeCCCeEEEEECCC-CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE--ee
Confidence 35778999876 599999999999999765 4566677 999999999999 8999999999 999999988543 22
Q ss_pred ccc----cCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceee---------ecCCCCee
Q 013717 134 TFN----DNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLR---------FMLPNSYV 198 (437)
Q Consensus 134 ~~~----~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 198 (437)
.+. ...+|.+.|.+++|+|+. |++++.|++|++||+.+++....+..-......... ....++.+
T Consensus 227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306 (611)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence 221 112699999999999775 999999999999999988755443221111111111 11111111
Q ss_pred EEee----ccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe-e----------------------
Q 013717 199 TVRR----HKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI-K---------------------- 249 (437)
Q Consensus 199 ~~~~----~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-~---------------------- 249 (437)
.+.. .....+.+|...|++++|+| ++|++++.|+.|++||+.+++....+ .
T Consensus 307 ~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~ 386 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW 386 (611)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET
T ss_pred EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEc
Confidence 1111 11235568999999999998 89999999999999998876543221 0
Q ss_pred -----------------------------------------------------------cccccEEEEEEecCCe-EEEE
Q 013717 250 -----------------------------------------------------------AHEDAVNAVAVSAGGT-VYTG 269 (437)
Q Consensus 250 -----------------------------------------------------------~~~~~v~~~~~~~~~~-l~~~ 269 (437)
.+...+.+++|+|+++ |++|
T Consensus 387 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasg 466 (611)
T 1nr0_A 387 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG 466 (611)
T ss_dssp TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred CCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEe
Confidence 0224578899999999 9999
Q ss_pred eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee--eecccccceE
Q 013717 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG--ALRGHGKAIL 347 (437)
Q Consensus 270 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~i~ 347 (437)
+.|+.|++||+.... ...... .+|...|.+++|+|||++|++++.|++|++||+.+... +.. ...+|...|.
T Consensus 467 s~D~~v~lwd~~~~~--~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~---~~~~~~~~~H~~~V~ 540 (611)
T 1nr0_A 467 GQDSKVHVYKLSGAS--VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE---LAHTNSWTFHTAKVA 540 (611)
T ss_dssp ETTSEEEEEEEETTE--EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE---ESCCCCCCCCSSCEE
T ss_pred CCCCeEEEEEccCCc--eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc---eeeeeeeeeccccee
Confidence 999999999986432 122233 56899999999999999999999999999999976221 222 2345999999
Q ss_pred EEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeee-eeecCC-CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 348 CLINVAG--LLMSGSADRTVRIWQRGSDGRFGCL-AVLEGH-TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 348 ~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
+++|+++ +|++|+.|++|++||+..+.. .+ ..+.+| ...|++++|+|++ + |++++.||+|++|++.
T Consensus 541 ~v~fspdg~~lasgs~D~~v~lW~~~~~~~--~~~~~~~~h~~~~v~~v~fs~d~-----~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 541 CVSWSPDNVRLATGSLDNSVIVWNMNKPSD--HPIIIKGAHAMSSVNSVIWLNET-----T-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCTTS--CCEEETTSSTTSCEEEEEEEETT-----E-EEEEETTSCEEEEECC
T ss_pred EEEECCCCCEEEEEECCCcEEEEECCCccc--ccchhhccCcccCeeEEEEcCCC-----E-EEEecCCCCEEEEecc
Confidence 9999865 999999999999999987652 33 567889 8999999999987 4 9999999999999974
No 6
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.9e-44 Score=322.17 Aligned_cols=287 Identities=17% Similarity=0.180 Sum_probs=228.8
Q ss_pred CccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeee------eccccCCCCcccEEEEEEeCCe-EEEEecCCeEEE
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSI------NTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRV 166 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~------~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~i 166 (437)
.|...|.+++|+ |++|++++++++++||.....+... ........|...|.+++|+++. |++|+.||+|++
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~l 107 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVEL 107 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEE
Confidence 577789999999 8999988854888887432100000 0000012356789999999766 999999999999
Q ss_pred EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcce
Q 013717 167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRC 244 (437)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~ 244 (437)
||+++++...... ....+|...|++++|++ ++|++|+.||+|++||++++++
T Consensus 108 Wd~~~~~~~~~~~--------------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 108 WELDENETLIVSK--------------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV 161 (344)
T ss_dssp EEECTTSSCEEEE--------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred EeccCCCceeEee--------------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 9999876443322 12247999999999998 8999999999999999999999
Q ss_pred EEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEe--eCccccEEEEEEccC-CCEEEEEeCCC
Q 013717 245 LESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATL--EKHKSAVNALALSDD-GTVLFSGACDR 319 (437)
Q Consensus 245 ~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~dg 319 (437)
+..+.+|...|++++|+|++. |++++.||.|++||++... ....+ ..+...+.+++|+|+ +++|++|+.||
T Consensus 162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK----PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS----CEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc----eeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 999999999999999999885 7899999999999997654 23333 345567999999995 56889999999
Q ss_pred cEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717 320 SILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396 (437)
Q Consensus 320 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 396 (437)
.|++||+++++. ...+.+|...|.+++|+++ +|++|+.|++|+|||+.+++ +..+.+|.+.|++++|+|
T Consensus 238 ~v~~wd~~~~~~----~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----~~~~~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 238 TVSLVDTKSTSC----VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----LFRSQAHRDFVRDATWSP 309 (344)
T ss_dssp EEEEEESCC--C----CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----EEEECCCSSCEEEEEECS
T ss_pred cEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----EEEEcCCCCCEEEEEEeC
Confidence 999999988764 3446789999999998753 79999999999999998754 456789999999999999
Q ss_pred cCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 397 EEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 397 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
++.. +|+++|.||+|++|++.++.
T Consensus 310 ~~~~----llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 310 LNHS----LLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSTT----EEEEEETTSCEEEEECCC--
T ss_pred CCCe----EEEEEcCCCeEEEEECCCCC
Confidence 8865 78899999999999998753
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-43 Score=317.74 Aligned_cols=303 Identities=20% Similarity=0.316 Sum_probs=240.4
Q ss_pred ceeeeec-CccC-CeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC
Q 013717 89 CINSVQL-GHKL-PIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD 161 (437)
Q Consensus 89 ~~~~~~~-~h~~-~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 161 (437)
..++..+ +|.+ .|.+++|+ +++||+|+.| .|+|||+.++.......+ ..+|...|.+++|+|+. |++|+.|
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~--~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL--SEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE--CSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee--ccccCCcEEEEEECCCCCEEEEEECC
Confidence 3456667 8988 99999999 8999999999 999999988643322222 25799999999999765 9999999
Q ss_pred CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEEC
Q 013717 162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRA 239 (437)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~ 239 (437)
++|++|++..+.... ...+.+|...|.+++|+| ++|++|+.|+.|++||+
T Consensus 83 ~~v~iw~~~~~~~~~----------------------------~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~ 134 (345)
T 3fm0_A 83 ATTCIWKKNQDDFEC----------------------------VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134 (345)
T ss_dssp SCEEEEEECCC-EEE----------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CcEEEEEccCCCeEE----------------------------EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEEC
Confidence 999999987653211 122347999999999998 89999999999999999
Q ss_pred CCcc---eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE
Q 013717 240 SDLR---CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG 315 (437)
Q Consensus 240 ~~~~---~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (437)
.+++ ++..+..|...|.+++|+|++. |++|+.|+.|++||++.. .......+.+|...|.+++|+|+|++|+++
T Consensus 135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~--~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~ 212 (345)
T 3fm0_A 135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED--DWVCCATLEGHESTVWSLAFDPSGQRLASC 212 (345)
T ss_dssp CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC--CEEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 8763 4566778999999999999998 999999999999987543 223556788999999999999999999999
Q ss_pred eCCCcEEEEECCCCccc-----------eEEeeeecc-cccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC-----e
Q 013717 316 ACDRSILVWDREDSANH-----------MVVTGALRG-HGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR-----F 376 (437)
Q Consensus 316 ~~dg~i~i~d~~~~~~~-----------~~~~~~~~~-~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~-----~ 376 (437)
+.|++|++||....... ......+.+ |...|.++++++. .|++++.|+.|++|+...... +
T Consensus 213 s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~ 292 (345)
T 3fm0_A 213 SDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF 292 (345)
T ss_dssp ETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred eCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence 99999999997432211 112223333 7888999998765 999999999999999875431 1
Q ss_pred e-eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717 377 G-CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS 427 (437)
Q Consensus 377 ~-~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 427 (437)
. ......+|...|++++|+|+++. +|++|+.||+|++|++..+++..
T Consensus 293 ~~~~~~~~~h~~~V~~v~~~p~~~~----~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 293 SLTAHLHQAHSQDVNCVAWNPKEPG----LLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EEEEEETTSSSSCEEEEEECSSSTT----EEEEEETTSCEEEEEECC-----
T ss_pred EEEeeecccccCcEeEeEEeCCCce----EEEEcCCCCcEEEEEecCCCCcc
Confidence 1 12334689999999999998754 89999999999999999887544
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.6e-43 Score=316.08 Aligned_cols=287 Identities=22% Similarity=0.311 Sum_probs=240.0
Q ss_pred eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717 90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK 163 (437)
Q Consensus 90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 163 (437)
.....+ +|.+.|.|++|+ +++|++|+.| .|++||..++.... .+ ..|...|.+++|+|+. +++++.|+.
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~--~~---~~~~~~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH--AV---TMPCTWVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--EE---ECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce--EE---ecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence 345566 999999999999 8999999999 99999998854333 33 3488899999999776 999999999
Q ss_pred EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717 164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD 241 (437)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 241 (437)
+++|++......... .....+.+|...|.+++|++ ..|++++.|++|++||+++
T Consensus 130 i~v~~~~~~~~~~~~------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~ 185 (354)
T 2pbi_B 130 CSVYPLTFDKNENMA------------------------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES 185 (354)
T ss_dssp EEEEECCCCTTCCSG------------------------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEEecccccccc------------------------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Confidence 999998754321110 11223457999999999998 7899999999999999999
Q ss_pred cceEEEeecccccEEEEEEecC--Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC
Q 013717 242 LRCLESIKAHEDAVNAVAVSAG--GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD 318 (437)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~--~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (437)
++.+..+.+|...|.+++++|+ +. |++|+.||.|++||++.. +.+..+..|...|.+++|+|++++|++|+.|
T Consensus 186 ~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 261 (354)
T 2pbi_B 186 GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG----QCVQAFETHESDVNSVRYYPSGDAFASGSDD 261 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCeEEEEEeCCCCEEEEEeCC
Confidence 9999999999999999999874 55 999999999999998764 3677788999999999999999999999999
Q ss_pred CcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717 319 RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396 (437)
Q Consensus 319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 396 (437)
++|++||++..+....+. ...+...+.++.++ +.+|++|+.|+.|++||+.+++ .+..+.+|.+.|++++|+|
T Consensus 262 ~~v~lwd~~~~~~~~~~~--~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---~~~~l~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 262 ATCRLYDLRADREVAIYS--KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS---RVSILFGHENRVSTLRVSP 336 (354)
T ss_dssp SCEEEEETTTTEEEEEEC--CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS---EEEEECCCSSCEEEEEECT
T ss_pred CeEEEEECCCCcEEEEEc--CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc---eEEEEECCCCcEEEEEECC
Confidence 999999998765332221 12233456777776 4599999999999999998876 7788999999999999999
Q ss_pred cCCCCceEEEEEecCCCcEEEEe
Q 013717 397 EEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 397 ~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
++. +|++|+.||+|++|+
T Consensus 337 dg~-----~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 DGT-----AFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSS-----CEEEEETTSEEEEEC
T ss_pred CCC-----EEEEEcCCCCEEecC
Confidence 985 799999999999996
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.9e-43 Score=309.42 Aligned_cols=284 Identities=17% Similarity=0.277 Sum_probs=236.7
Q ss_pred eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeE
Q 013717 91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKI 164 (437)
Q Consensus 91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i 164 (437)
...++ +|.+.|.+++|+ +++|++|+.| .|++||+.++ ..+..+ ..|...|.+++|+++. |++|+.|++|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--VEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--ceeEEe---eccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 44567 999999999999 8999999999 9999999985 344444 4689999999999665 9999999999
Q ss_pred EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc
Q 013717 165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL 242 (437)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 242 (437)
++||+.+++.... +.+|...|.+++|+| .++++|+.||+|++||++++
T Consensus 80 ~vwd~~~~~~~~~------------------------------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 129 (304)
T 2ynn_A 80 RVFNYNTGEKVVD------------------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (304)
T ss_dssp EEEETTTCCEEEE------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred EEEECCCCcEEEE------------------------------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence 9999998764332 246999999999998 89999999999999999887
Q ss_pred -ceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc--CCCEEEEEeC
Q 013717 243 -RCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD--DGTVLFSGAC 317 (437)
Q Consensus 243 -~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~ 317 (437)
.....+.+|...|.+++|+| ++. |++|+.|+.|++||++.... .......+...+..+.|+| ++.+|++|+.
T Consensus 130 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp TEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC---SEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred cchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc---cceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 45567789999999999999 455 99999999999999875442 2222345667899999987 7789999999
Q ss_pred CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE
Q 013717 318 DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV 395 (437)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 395 (437)
|++|++||+++++ ....+.+|...|.++.++++ +|++|+.||+|++||+.+.+ ++..+..|...+.+++|+
T Consensus 207 D~~i~iWd~~~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~---~~~~~~~~~~~~~~~~~~ 279 (304)
T 2ynn_A 207 DLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK---VEKTLNVGLERSWCIATH 279 (304)
T ss_dssp TSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC---EEEEECCSSSSEEEEEEC
T ss_pred CCeEEEEeCCCCc----cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---eeeeccCCCccEEEEEEC
Confidence 9999999998765 45557789999999988865 89999999999999999876 888999999999999999
Q ss_pred ccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 396 TEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 396 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
|++.. .++++|+.| .+.+|++...
T Consensus 280 ~~~~~---~~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 280 PTGRK---NYIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp TTCGG---GCEEEEETT-EEEEEECC--
T ss_pred CCCCc---eEEEEecCC-ceEEEEeccC
Confidence 98753 246766655 5888887653
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.6e-43 Score=338.08 Aligned_cols=315 Identities=18% Similarity=0.244 Sum_probs=261.4
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
..+.|.|....+++.+ ++.+.+|+.... .....+ +|...|++++|+ |++||+|+.| +|+|||+.+++......+
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~l~~~~~~-~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~ 99 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCN-GTSVYTVPVGSL-TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI 99 (611)
T ss_dssp CCCEECTTSSEEEEEE-TTEEEEEETTCS-SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred eEEeeCCCCCEEEeCC-CCEEEEecCCCc-ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee
Confidence 4578899999898876 569999999754 444556 999999999999 9999999999 999999976444333344
Q ss_pred ccCCCCcccEEEEEEeCCe--EEEEecC----CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717 136 NDNDSSSGSVKSVTFCDGK--IFTAHQD----CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~~~--l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (437)
.+|.+.|.+++|+|+. |++++.+ +.|++||.. +.... +.
T Consensus 100 ---~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~------------------------------l~ 144 (611)
T 1nr0_A 100 ---PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--TSNGN------------------------------LT 144 (611)
T ss_dssp ---ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--CBCBC------------------------------CC
T ss_pred ---cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC--CCcce------------------------------ec
Confidence 5699999999999776 7777754 478888743 22211 23
Q ss_pred cCCCcEEEEEeCC--C-eEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc
Q 013717 210 EHGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK 285 (437)
Q Consensus 210 ~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~ 285 (437)
+|...|.+++|+| . .|++|+.|++|++||..+++++..+.+|...|.+++|+|++. |++|+.|+.|++||+..+.
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~- 223 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT- 223 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc-
Confidence 6999999999999 3 699999999999999999999999999999999999999998 9999999999999986543
Q ss_pred cceeeEEee-------CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEE
Q 013717 286 RHALIATLE-------KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMS 358 (437)
Q Consensus 286 ~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 358 (437)
.+..+. +|...|.+++|+|+|++|++++.|++|++||+++++....+.. ...+......+.+++..+++
T Consensus 224 ---~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s 299 (611)
T 1nr0_A 224 ---KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTRIEDQQLGIIWTKQALVS 299 (611)
T ss_dssp ---EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSGGGCEEEEEECSSCEEE
T ss_pred ---EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC-CCCccceeEEEEEcCCEEEE
Confidence 344442 6999999999999999999999999999999988764433321 12344556777888889999
Q ss_pred EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 359 GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 359 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
++.||.+++||...+. +...+.+|...|++++|+|++. +|++++.||.|++||+.++.
T Consensus 300 ~s~d~~i~~~~~~~~~---~~~~~~gh~~~v~~l~~spdg~-----~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 300 ISANGFINFVNPELGS---IDQVRYGHNKAITALSSSADGK-----TLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp EETTCCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSS-----EEEEEETTSCEEEEETTTCC
T ss_pred EeCCCcEEEEeCCCCC---cceEEcCCCCCEEEEEEeCCCC-----EEEEEeCCCcEEEEECCCCc
Confidence 9999999999998755 6778899999999999999884 89999999999999998764
No 11
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-43 Score=312.11 Aligned_cols=303 Identities=17% Similarity=0.270 Sum_probs=230.4
Q ss_pred eeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEE
Q 013717 90 INSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIR 165 (437)
Q Consensus 90 ~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~ 165 (437)
.++..+ +|.+.|.+++|++++||+|+.| .|++||+..+.......+. ..+|...|.+++|+|+. |++++.|++|+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLD-ETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEEC-TTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEe-cCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 455667 9999999999997799999999 9999999875433333331 12499999999999765 99999999999
Q ss_pred EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC--
Q 013717 166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD-- 241 (437)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~-- 241 (437)
+||+......... ......+.+|...|.+++|+| ++|++|+.|++|++||+..
T Consensus 84 iw~~~~~~~~~~~-----------------------~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~ 140 (330)
T 2hes_X 84 IWAKEESADRTFE-----------------------MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140 (330)
T ss_dssp EEEC-------CC-----------------------CEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred EEEcccCcCcccc-----------------------ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence 9998643210000 011233457999999999998 8999999999999999943
Q ss_pred --cceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC--CCEEEEEe
Q 013717 242 --LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD--GTVLFSGA 316 (437)
Q Consensus 242 --~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~ 316 (437)
.+++..+.+|...|.+++|+|++. |++|+.|+.|++||+... ....+..+.+|...|.+++|+|+ +.+|++|+
T Consensus 141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 218 (330)
T 2hes_X 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD--DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS 218 (330)
T ss_dssp CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE
T ss_pred CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC--CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe
Confidence 256777889999999999999998 999999999999987532 23467788899999999999998 77999999
Q ss_pred CCCcEEEEECCCCcc----ceEEeeeecc-cccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeee-eeecCCCC-C
Q 013717 317 CDRSILVWDREDSAN----HMVVTGALRG-HGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCL-AVLEGHTK-P 388 (437)
Q Consensus 317 ~dg~i~i~d~~~~~~----~~~~~~~~~~-~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~-~ 388 (437)
.|++|++||++.+.. .......+.+ |...|.+++++++ +|++++.||.|++||..+++ +..+ ..+.+|.. .
T Consensus 219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~h~~~~ 297 (330)
T 2hes_X 219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE-WKVFAKRALCHGVYE 297 (330)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTE-EEEEEEESCTTTTSC
T ss_pred CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCc-eEEEeccccccccce
Confidence 999999999865321 1123333443 8899999999855 89999999999999987653 2233 33467887 8
Q ss_pred eeEEEEEcc-CCCCceEEEEEecCCCcEEEEeeccC
Q 013717 389 VKSLTAVTE-EGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 389 v~~l~~~~~-~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
|.+++|+|. ++ .+|++|+.||.|++|+++..
T Consensus 298 v~~v~~~~~~~~----~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 298 INVVKWLELNGK----TILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp EEEEEEC---------CCEEEEETTSEEEEEEC---
T ss_pred EEEEEEecCCCc----eEEEEecCCCcEEEEEeccC
Confidence 999999994 22 37999999999999998753
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-43 Score=322.76 Aligned_cols=297 Identities=14% Similarity=0.247 Sum_probs=240.8
Q ss_pred ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC
Q 013717 89 CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC 162 (437)
Q Consensus 89 ~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg 162 (437)
..+...+ +|.+.|++++|+ +++|++|+.| +|+|||..++. ....+ ..|...|.+++|+++. |++|+.|+
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~--~~~~~---~~h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ--KTHAI---KLHCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--EEEEE---ECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--cceEE---ecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 4566677 999999999999 8999999999 99999999853 34444 4699999999999776 99999999
Q ss_pred eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEEC
Q 013717 163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRA 239 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~ 239 (437)
.+++|++.+........ .....+.+|...|.++.|.+ ..|++|+.|++|++||+
T Consensus 131 ~v~iw~~~~~~~~~~~~-----------------------~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~ 187 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNM-----------------------PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV 187 (380)
T ss_dssp CCEEEECCCCSSCCCSS-----------------------TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT
T ss_pred cEEEEECCCCccccCCc-----------------------cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc
Confidence 99999997643111000 01123357999999999987 57999999999999999
Q ss_pred CCcceEEEe-----ecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE
Q 013717 240 SDLRCLESI-----KAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL 312 (437)
Q Consensus 240 ~~~~~~~~~-----~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (437)
.+++.+..+ .+|...|.++++++ ++. +++|+.||.|++||++... ..+..+.+|...|.+++|+|++++|
T Consensus 188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l 264 (380)
T 3iz6_a 188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS---RAVRTYHGHEGDINSVKFFPDGQRF 264 (380)
T ss_dssp TTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC---CCCEEECCCSSCCCEEEECTTSSEE
T ss_pred CCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC---cceEEECCcCCCeEEEEEecCCCeE
Confidence 999988877 47889999999987 566 9999999999999987432 3566788999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCccceEEeeee---cccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeee----c
Q 013717 313 FSGACDRSILVWDREDSANHMVVTGAL---RGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVL----E 383 (437)
Q Consensus 313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~ 383 (437)
++|+.||+|++||+++++....+.... ..+...+.+++|+ +.+|++|+.||.|++||+..++ .+..+ .
T Consensus 265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---~~~~~~~~~~ 341 (380)
T 3iz6_a 265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE---MVLNLGTLQN 341 (380)
T ss_dssp EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC---EEEEECCSCS
T ss_pred EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc---eEEEEecccC
Confidence 999999999999999876443332211 1122336666665 5599999999999999998876 44444 6
Q ss_pred CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 384 GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 384 ~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
+|.+.|++++|+|++. +|++|+.||+|++|++....
T Consensus 342 ~h~~~v~~l~~s~dg~-----~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 342 SHEGRISCLGLSSDGS-----ALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCCCCCCEEEECSSSS-----EEEEECTTSCEEEEECCSSS
T ss_pred CCCCceEEEEECCCCC-----EEEEeeCCCCEEEEecCCCc
Confidence 8999999999999985 89999999999999998653
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1e-41 Score=302.94 Aligned_cols=282 Identities=23% Similarity=0.417 Sum_probs=237.2
Q ss_pred ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC
Q 013717 89 CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC 162 (437)
Q Consensus 89 ~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg 162 (437)
......+ +|.+.|.+++|+ +++|++|+.| .|++|+..+++. ...+ .+|...|.+++|+++. |++++.|+
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTI---SGHKLGISDVAWSSDSNLLVSASDDK 87 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEEE---CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc--chhh---ccCCCceEEEEEcCCCCEEEEECCCC
Confidence 4455566 999999999999 8999999999 999999988543 3333 5799999999999765 99999999
Q ss_pred eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECC
Q 013717 163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRAS 240 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~ 240 (437)
.|++||+++++.... +.+|...|.+++|++ +++++|+.||.|++||++
T Consensus 88 ~i~vwd~~~~~~~~~------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 137 (312)
T 4ery_A 88 TLKIWDVSSGKCLKT------------------------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137 (312)
T ss_dssp EEEEEETTTCCEEEE------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred EEEEEECCCCcEEEE------------------------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 999999987754332 246899999999998 899999999999999999
Q ss_pred CcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe-eCccccEEEEEEccCCCEEEEEeCC
Q 013717 241 DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL-EKHKSAVNALALSDDGTVLFSGACD 318 (437)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d 318 (437)
+++.+..+..|...|.+++|+|++. +++++.||.|++||++... .+..+ ..+...+..++|+|++++|++++.|
T Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 213 (312)
T 4ery_A 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213 (312)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eeeEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence 9999999999999999999999998 9999999999999987543 33333 4566789999999999999999999
Q ss_pred CcEEEEECCCCccceEEeeeecccccce----EEEE-eeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717 319 RSILVWDREDSANHMVVTGALRGHGKAI----LCLI-NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT 393 (437)
Q Consensus 319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i----~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 393 (437)
|.|++||+++++. ...+.+|.... ..+. .++.+|++|+.||.|++||+.+++ .+..+.+|...|.+++
T Consensus 214 ~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~ 286 (312)
T 4ery_A 214 NTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTA 286 (312)
T ss_dssp TEEEEEETTTTEE----EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC---EEEEECCCSSCEEEEE
T ss_pred CeEEEEECCCCcE----EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch---hhhhhhccCCcEEEEe
Confidence 9999999987753 33344554432 2222 235599999999999999999876 7889999999999999
Q ss_pred EEccCCCCceEEEEEec--CCCcEEEEeec
Q 013717 394 AVTEEGQNGVVSVFSGS--LDGEIRAWQVS 421 (437)
Q Consensus 394 ~~~~~~~~~~~~l~s~~--~dg~i~iw~~~ 421 (437)
|+|++. +|++++ .|+.|++|+.+
T Consensus 287 ~~p~~~-----~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 287 CHPTEN-----IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECSSSS-----EEEEEECTTTCCEEEEECC
T ss_pred ecCcCC-----ceEEEEccCCccEEEecCC
Confidence 999885 688876 69999999975
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.3e-42 Score=305.32 Aligned_cols=286 Identities=22% Similarity=0.357 Sum_probs=232.4
Q ss_pred ceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC
Q 013717 89 CINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD 161 (437)
Q Consensus 89 ~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 161 (437)
..+...+ +|.+.|.+++|+ +++|++|+.| +|++||+..........+..+.+|...|.+++|+++. |++++.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 3445567 999999999998 4799999999 9999998753222212222236899999999999765 9999999
Q ss_pred CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEEC
Q 013717 162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRA 239 (437)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~ 239 (437)
++|++||+.+++.... +.+|...|.+++|++ .++++|+.|++|++||+
T Consensus 87 ~~v~~wd~~~~~~~~~------------------------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~ 136 (319)
T 3frx_A 87 KTLRLWDVATGETYQR------------------------------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136 (319)
T ss_dssp SEEEEEETTTTEEEEE------------------------------EECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred CEEEEEECCCCCeeEE------------------------------EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 9999999998764332 247999999999998 89999999999999999
Q ss_pred CCcceEEEeecccccEEEEEEecC------Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE
Q 013717 240 SDLRCLESIKAHEDAVNAVAVSAG------GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL 312 (437)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~------~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (437)
+ ++++..+.+|...|.++++.|. +. +++++.|+.|++||++.. .....+.+|...|.+++|+|+|++|
T Consensus 137 ~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 137 K-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF----QIEADFIGHNSNINTLTASPDGTLI 211 (319)
T ss_dssp T-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT----EEEEEECCCCSCEEEEEECTTSSEE
T ss_pred C-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc----hhheeecCCCCcEEEEEEcCCCCEE
Confidence 6 5677888899999999999984 33 999999999999998653 4667788999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeec-------
Q 013717 313 FSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLE------- 383 (437)
Q Consensus 313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------- 383 (437)
++|+.||.|++||+++++.... +. +...+.+++|+++ +|++++.+ .+++|++.... .+..+.
T Consensus 212 ~s~~~dg~i~iwd~~~~~~~~~----~~-~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~---~~~~~~~~~~~~~ 282 (319)
T 3frx_A 212 ASAGKDGEIMLWNLAAKKAMYT----LS-AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQY---LVDDLRPEFAGYS 282 (319)
T ss_dssp EEEETTCEEEEEETTTTEEEEE----EE-CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEE---EEEEECCCCTTCC
T ss_pred EEEeCCCeEEEEECCCCcEEEE----ec-CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCe---eeeccCccccccc
Confidence 9999999999999987754332 33 2457888888766 77766654 59999998644 333332
Q ss_pred -CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 384 -GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 384 -~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
.|...+.+++|+|++. +|++|+.||.|++||+.++
T Consensus 283 ~~~~~~v~~~~~spdg~-----~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 283 KAAEPHAVSLAWSADGQ-----TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp GGGCCCEEEEEECTTSS-----EEEEEETTSCEEEEEEEEC
T ss_pred cCcCcceeEEEECCCCC-----EEEEeecCceEEEEEEeec
Confidence 3566899999999984 8999999999999999864
No 15
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-41 Score=327.43 Aligned_cols=301 Identities=25% Similarity=0.434 Sum_probs=260.3
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
..+.+.|....+++.+.|+.+++|+.+. .....+ +|...|.+++|+ +++|++++.| .|++||..... +..+
T Consensus 266 ~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~---~~~~ 340 (577)
T 2ymu_A 266 NGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH---LQTL 340 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE---EEEE
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---eEEE
Confidence 4678899999999999999999999753 455666 999999999999 8999999999 99999988743 2333
Q ss_pred ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717 136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD 213 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
.+|...|.+++|+++. |++++.||.|++||... +... .+.+|..
T Consensus 341 ---~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~~~------------------------------~~~~~~~ 386 (577)
T 2ymu_A 341 ---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQ------------------------------TLTGHSS 386 (577)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-CEEE------------------------------EEECCSS
T ss_pred ---eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-CEEE------------------------------EecCCCC
Confidence 5699999999999775 99999999999999643 2211 2246899
Q ss_pred cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717 214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI 290 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~ 290 (437)
.|.+++|+| ++|++++.|+.|++||. +++.+..+..|...|++++|+|++. |++++.|+.|++||+.. +.+
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-----~~~ 460 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-----QLL 460 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-----CEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-----CEE
Confidence 999999998 89999999999999995 6778888999999999999999998 99999999999998642 467
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEe
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIW 368 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iw 368 (437)
..+.+|...|.+++|+|++++|++++.|+.|++||.. ++ ....+.+|...|.+++++++ +|++++.||.|++|
T Consensus 461 ~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~----~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535 (577)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CC----EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence 7788999999999999999999999999999999964 33 44556789999999988765 99999999999999
Q ss_pred eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
|.. ++ ++..+.+|.+.|++++|+|++. +|+|++.||+|++||
T Consensus 536 d~~-~~---~~~~~~~h~~~v~~~~fs~dg~-----~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 536 NRN-GQ---LLQTLTGHSSSVWGVAFSPDGQ-----TIASASSDKTVKLWN 577 (577)
T ss_dssp CTT-SC---EEEEEECCSSCEEEEEECTTSS-----CEEEEETTSCEEEEC
T ss_pred eCC-CC---EEEEEcCCCCCEEEEEEcCCCC-----EEEEEeCCCEEEEeC
Confidence 964 33 7889999999999999999985 799999999999997
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-41 Score=309.79 Aligned_cols=293 Identities=27% Similarity=0.447 Sum_probs=234.1
Q ss_pred eecCccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccC---------------CCCcccEEEEEEeCCe-
Q 013717 93 VQLGHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDN---------------DSSSGSVKSVTFCDGK- 154 (437)
Q Consensus 93 ~~~~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~---------------~~h~~~v~~l~~~~~~- 154 (437)
..++|...|.|++|+ |++||+|+.+.+++|++.+++.. ..+... ..+...|.+++|+++.
T Consensus 59 ~~~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 59 KSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLV--ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEE--EEECC-----------------CCCCBEEEEEECTTSS
T ss_pred EecCCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEE--EEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence 344899999999999 89999988559999999886432 222110 0123359999999765
Q ss_pred -EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECC
Q 013717 155 -IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD 231 (437)
Q Consensus 155 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 231 (437)
|++|+.|+.|++||+.+++.... +.+|...|.+++|++ .+|++++.|
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~------------------------------~~~h~~~v~~~~~~p~~~~l~s~s~d 186 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMI------------------------------LQGHEQDIYSLDYFPSGDKLVSGSGD 186 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEE------------------------------ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEcCCCeEEEEECCCCcEEEE------------------------------EccCCCCEEEEEEcCCCCEEEEecCC
Confidence 99999999999999987754332 246999999999998 899999999
Q ss_pred CcEEEEECCCcceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEe-------eCccccEEE
Q 013717 232 KSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATL-------EKHKSAVNA 302 (437)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~-------~~~~~~i~~ 302 (437)
++|++||++++++...+. +...+.+++++| ++. +++|+.||.|++||++... .+..+ .+|...|.+
T Consensus 187 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~~h~~~v~~ 261 (393)
T 1erj_A 187 RTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF----LVERLDSENESGTGHKDSVYS 261 (393)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC----EEEEEC------CCCSSCEEE
T ss_pred CcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc----EEEeecccccCCCCCCCCEEE
Confidence 999999999998888776 567799999999 777 9999999999999987543 23333 568899999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCccc--------eEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEeeCCC
Q 013717 303 LALSDDGTVLFSGACDRSILVWDREDSANH--------MVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~ 372 (437)
++|+|+|++|++|+.||.|++||++..... ......+.+|...|.++++++ .+|++|+.||.|++||+.+
T Consensus 262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 999999999999999999999999764321 112345678999999888875 4999999999999999998
Q ss_pred CCCeeeeeeecCCCCCeeEEEEEccCCC-CceEEEEEecCCCcEEEEeeccCCC
Q 013717 373 DGRFGCLAVLEGHTKPVKSLTAVTEEGQ-NGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 373 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
++ ++..+.+|.+.|.+++|++.... +.+.+|++|+.||+|++|++...+|
T Consensus 342 ~~---~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~p 392 (393)
T 1erj_A 342 GN---PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAP 392 (393)
T ss_dssp CC---EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC--
T ss_pred Ce---EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccCC
Confidence 77 78889999999999999874210 1225899999999999999987644
No 17
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.2e-41 Score=304.71 Aligned_cols=286 Identities=20% Similarity=0.318 Sum_probs=228.3
Q ss_pred eeeeec-CccCCeEEEEe-----e---CCEEEEEecC-eEEEEeCCCCc-----eeeeeccccCCCCcccEEEEEEeCCe
Q 013717 90 INSVQL-GHKLPIGCIAV-----H---HNFLYAASSH-EINVYDRTGTT-----WTSINTFNDNDSSSGSVKSVTFCDGK 154 (437)
Q Consensus 90 ~~~~~~-~h~~~V~~l~~-----~---~~~l~s~~~d-~v~vwd~~~~~-----~~~~~~~~~~~~h~~~v~~l~~~~~~ 154 (437)
.+...+ +|.+.|++++| + +++|++|+.| +|++||+..++ ......+ .+|...|.+++|+++.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l---~~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL---TGHNHFVSDLALSQEN 88 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE---CCCSSCEEEEEECSST
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh---ccCCCceEEEEECCCC
Confidence 455567 99999999999 3 7899999999 99999997642 1223333 6899999999999765
Q ss_pred --EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC
Q 013717 155 --IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW 230 (437)
Q Consensus 155 --l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 230 (437)
+++++.|++|++||+++++.... +.+|...|.+++|+| ++|++++.
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~~~~------------------------------~~~h~~~v~~v~~sp~~~~l~s~~~ 138 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTTYKR------------------------------FVGHQSEVYSVAFSPDNRQILSAGA 138 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCEEEE------------------------------EECCCSCEEEEEECSSTTEEEEEET
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEE------------------------------EcCCCCcEEEEEECCCCCEEEEEcC
Confidence 89999999999999988754332 246999999999998 89999999
Q ss_pred CCcEEEEECCCcceEEEee---cccccEEEEEEecCC----------e-EEEEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717 231 DKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGG----------T-VYTGSADRKIRVWAKPFNEKRHALIATLEKH 296 (437)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~----------~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (437)
|+.|++||+.. +...... .|...|.+++|+|++ . +++++.||.|++||... .....+.+|
T Consensus 139 d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h 212 (343)
T 2xzm_R 139 EREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAH 212 (343)
T ss_dssp TSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECC
T ss_pred CCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCc
Confidence 99999999974 3333333 688899999999986 4 99999999999998432 456678889
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCC
Q 013717 297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGR 375 (437)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 375 (437)
...|.+++|+|+|++|++|+.||.|++||+......... + .+...|.+++|+++ .+++++.|+.|++||+.+.+.
T Consensus 213 ~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~---~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 213 ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE---F-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE---E-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCS
T ss_pred cccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee---e-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCC
Confidence 999999999999999999999999999999544332221 1 23456888888866 344566788899999987652
Q ss_pred eeeeeee-----------cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 376 FGCLAVL-----------EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 376 ~~~~~~~-----------~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
.. +..+ .+|...|.+++|+|++. +|++|+.||.|++|++++++
T Consensus 289 ~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-----~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 289 AP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGK-----KLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSC-----CEEEEETTSEEEEEEEEEEE
T ss_pred Cc-eEEeecCcchhhhhhcCCCCceEEEEECCCCC-----eEEEecCCceEEEEEEEccC
Confidence 21 1122 27888999999999985 69999999999999998764
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.3e-40 Score=309.08 Aligned_cols=308 Identities=22% Similarity=0.368 Sum_probs=264.5
Q ss_pred eeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCC
Q 013717 63 QTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS 140 (437)
Q Consensus 63 ~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~ 140 (437)
.+.++...+++++.||.|.+|+.... .+...+ +|...|.+++|++++|++|+.| .|++||+.++ +....+ .+
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~---~~ 197 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG--ECIHTL---YG 197 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTC-CEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT--EEEEEE---CC
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCC-cEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC--cEEEEE---CC
Confidence 35556788999999999999999764 455666 9999999999999999999999 9999999985 444444 57
Q ss_pred CcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717 141 SSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV 220 (437)
Q Consensus 141 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (437)
|...|.++.++++.+++++.||.|++||+.+++.... +.+|...|.++.+
T Consensus 198 h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~------------------------------~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 198 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV------------------------------LMGHVAAVRCVQY 247 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEE------------------------------EECCSSCEEEEEE
T ss_pred CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEE------------------------------EcCCcccEEEEEE
Confidence 9999999999998999999999999999987754332 2368999999999
Q ss_pred CCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc
Q 013717 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA 299 (437)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (437)
+++++++|+.||.|++||+++++.+..+..|...|.++++ ++. +++|+.||.|++||++.. +.+..+.+|...
T Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~ 321 (445)
T 2ovr_B 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSL 321 (445)
T ss_dssp CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC----CEEEEECCCCSC
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC----CEEEEEcCCccc
Confidence 8899999999999999999999999999999999999999 555 999999999999998754 367778889999
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeee
Q 013717 300 VNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCL 379 (437)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 379 (437)
+.++.++ +++|++|+.||.|++||+++++....+. ....|...|.++.+++++|++|+.||.|++||+.+++ .+
T Consensus 322 v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~ 395 (445)
T 2ovr_B 322 TSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ-GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE---FI 395 (445)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC-STTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC---EE
T ss_pred EEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEc-cCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCc---ee
Confidence 9988875 6799999999999999998876333221 1234888999999999999999999999999999887 45
Q ss_pred eee-----cCCCCCeeEEEEEccCCCCceEEEEEecCCCc----EEEEeeccC
Q 013717 380 AVL-----EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE----IRAWQVSVS 423 (437)
Q Consensus 380 ~~~-----~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~----i~iw~~~~~ 423 (437)
..+ .+|.+.|++++|+|++ .++++|+.||+ |.+||++..
T Consensus 396 ~~~~~~~~~~~~~~v~~~~~s~~~-----~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 396 RNLVTLESGGSGGVVWRIRASNTK-----LVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEECTTGGGTCEEEEEEECSSE-----EEEEEECSSSSSCCEEEEEECCCC
T ss_pred eeeeccccCCCCceEEEEEecCCE-----EEEEEcccCCCCccEEEEEECCCC
Confidence 555 4688899999999987 58999999998 999999864
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-40 Score=299.58 Aligned_cols=292 Identities=21% Similarity=0.296 Sum_probs=231.8
Q ss_pred ceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC
Q 013717 89 CINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD 161 (437)
Q Consensus 89 ~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 161 (437)
..+..+| ||.+.|++|+|+ +++|+||+.| +|+|||+...+.........+.+|...|.+++|+++. |++++.|
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 3455678 999999999998 5799999999 9999999875432222222337899999999999765 9999999
Q ss_pred CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEEC
Q 013717 162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRA 239 (437)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~ 239 (437)
+.|++|+.......... ..+...+..+.+.+ .++++++.|+.+++||+
T Consensus 108 ~~i~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~ 157 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRF------------------------------VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157 (340)
T ss_dssp SEEEEEETTTTEEEEEE------------------------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred ccceEEeecccceeeee------------------------------cCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence 99999999876543322 24667777888877 89999999999999998
Q ss_pred CCcceE-EEeecccccEEEEEEecCCe---EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE
Q 013717 240 SDLRCL-ESIKAHEDAVNAVAVSAGGT---VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG 315 (437)
Q Consensus 240 ~~~~~~-~~~~~~~~~v~~~~~~~~~~---l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (437)
...... .....|...+..++|++++. +++++.|+.|++||++.. +....+.+|...|++++|+|++++|++|
T Consensus 158 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 233 (340)
T 4aow_A 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC----KLKTNHIGHTGYLNTVTVSPDGSLCASG 233 (340)
T ss_dssp TSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC----ceeeEecCCCCcEEEEEECCCCCEEEEE
Confidence 765443 33457889999999998764 789999999999988654 4677788999999999999999999999
Q ss_pred eCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCee------eeeeecCCCCC
Q 013717 316 ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFG------CLAVLEGHTKP 388 (437)
Q Consensus 316 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~------~~~~~~~h~~~ 388 (437)
+.||.|++||+++.+.... +. +...+.++.++++ .+++++.|+.|++||++...... ......+|...
T Consensus 234 s~Dg~i~iwd~~~~~~~~~----~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (340)
T 4aow_A 234 GKDGQAMLWDLNEGKHLYT----LD-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ 308 (340)
T ss_dssp ETTCEEEEEETTTTEEEEE----EE-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred eCCCeEEEEEeccCceeee----ec-CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence 9999999999987653332 23 3456888888766 77788889999999998754111 11234578999
Q ss_pred eeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 389 VKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 389 v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
|++++|+|++. +|++|+.||.|+|||+++|.
T Consensus 309 v~~l~~s~dg~-----~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 309 CTSLAWSADGQ-----TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEECTTSS-----EEEEEETTSCEEEEEEEC--
T ss_pred EEEEEECCCCC-----EEEEEeCCCEEEEEeCCCcC
Confidence 99999999884 89999999999999999875
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4e-41 Score=310.14 Aligned_cols=270 Identities=23% Similarity=0.381 Sum_probs=236.0
Q ss_pred cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN 133 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~ 133 (437)
+..++.|+|....+++++.||+|.+|+..... +...+ +|.+.|.+++|+ +++|++|+.| .|++||+.++ +.+.
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--~~~~ 186 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIR 186 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCC-CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--CEEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeE
Confidence 34578999999999999999999999997644 45566 999999999999 8999999999 9999999884 4455
Q ss_pred ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
.+ .+|...|.+++|+|+. |++|+.|++|++||+.++..... +.+|
T Consensus 187 ~~---~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~------------------------------~~~h 233 (410)
T 1vyh_C 187 TM---HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT------------------------------FTGH 233 (410)
T ss_dssp CC---CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE------------------------------EECC
T ss_pred EE---cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE------------------------------EeCC
Confidence 55 6899999999999765 99999999999999988754332 2469
Q ss_pred CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC--------------------Ce-EEE
Q 013717 212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG--------------------GT-VYT 268 (437)
Q Consensus 212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~-l~~ 268 (437)
...|.++.+++ .++++|+.|+.|++||+.++++...+..|...|.+++|+|+ +. +++
T Consensus 234 ~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 99999999988 89999999999999999999999999999999999999986 44 999
Q ss_pred EeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEE
Q 013717 269 GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILC 348 (437)
Q Consensus 269 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 348 (437)
|+.|+.|++||++.. ..+..+.+|...|.+++|+|+|++|++|+.||.|++||+.+++.. ..+.+|...|.+
T Consensus 314 gs~D~~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~----~~~~~h~~~v~~ 385 (410)
T 1vyh_C 314 GSRDKTIKMWDVSTG----MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM----KTLNAHEHFVTS 385 (410)
T ss_dssp EETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC----EEEECCSSCEEE
T ss_pred EeCCCeEEEEECCCC----ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE----EEEcCCCCcEEE
Confidence 999999999998754 467788899999999999999999999999999999999877643 345679999999
Q ss_pred EEeeCC--EEEEEeCCCcEEEeeCC
Q 013717 349 LINVAG--LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 349 ~~~~~~--~l~~~~~dg~i~iwd~~ 371 (437)
++++++ +|++|+.||.|++|+++
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999866 99999999999999864
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.1e-40 Score=317.84 Aligned_cols=303 Identities=25% Similarity=0.436 Sum_probs=262.0
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
.++.+.|....+++.+.|+.+++|+.+ ...+..+ +|...|.+++|+ +++|++++.| .|++||.... ....+
T Consensus 225 ~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~---~~~~~ 299 (577)
T 2ymu_A 225 RGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ---LLQTL 299 (577)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT--SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---EEEEE
Confidence 467889999999999999999999964 3456666 999999999999 8899999999 9999998653 33333
Q ss_pred ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717 136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD 213 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
.+|...|.+++|+++. +++++.|++|++||....... .+.+|..
T Consensus 300 ---~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~-------------------------------~~~~~~~ 345 (577)
T 2ymu_A 300 ---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ-------------------------------TLTGHSS 345 (577)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE-------------------------------EECCCSS
T ss_pred ---ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE-------------------------------EEeCCCC
Confidence 5799999999999775 999999999999998754321 1235889
Q ss_pred cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717 214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI 290 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~ 290 (437)
.|.+++++| .++++++.||.|++||. +++.+..+..|...|.+++|+|+++ |++++.|+.|++||... +.+
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-----~~~ 419 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QLL 419 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-----CEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-----CEE
Confidence 999999998 89999999999999995 6788888999999999999999999 99999999999998542 467
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEe
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIW 368 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iw 368 (437)
..+.+|...|.+++|+||+++|++++.|+.|++||... + ....+.+|...|.+++++++ +|++++.|+.|++|
T Consensus 420 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~----~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw 494 (577)
T 2ymu_A 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C----EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 78889999999999999999999999999999999743 2 34456789999999988765 99999999999999
Q ss_pred eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
|.. ++ ++..+.+|...|++++|+|++. +|++++.||.|++||.+
T Consensus 495 ~~~-~~---~~~~~~~h~~~v~~l~~s~dg~-----~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 495 NRN-GQ---LLQTLTGHSSSVRGVAFSPDGQ-----TIASASDDKTVKLWNRN 538 (577)
T ss_dssp ETT-SC---EEEEEECCSSCEEEEEECTTSS-----CEEEEETTSEEEEECTT
T ss_pred cCC-CC---EEEEEeCCCCCEEEEEEcCCCC-----EEEEEECcCEEEEEeCC
Confidence 964 33 7889999999999999999885 79999999999999964
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-41 Score=315.41 Aligned_cols=324 Identities=15% Similarity=0.150 Sum_probs=262.3
Q ss_pred cccceeeccccc-ccccc----------CCCceeEEecCCCcc--eeeeecCccCCeEEEEee--CCEEEEEecC-eEEE
Q 013717 58 SNLSLQTLPSVP-SLQKL----------SPDETINFSSASHLC--INSVQLGHKLPIGCIAVH--HNFLYAASSH-EINV 121 (437)
Q Consensus 58 ~~~~~~~~~~~~-~~~s~----------s~dg~i~~~~~~~~~--~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~v 121 (437)
....+.+.|... .+++. +.|+.|++|+..... .+...+.|...|.+++|+ +++|++|+.| .|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 334677778765 77777 889999999997655 344555899999999998 8999999999 9999
Q ss_pred EeCCCC--ceeeeeccccCCCCcccEEEEEEeCC-e--EEEEecCCeEEEEeCCCCcc------cccccccCccccceee
Q 013717 122 YDRTGT--TWTSINTFNDNDSSSGSVKSVTFCDG-K--IFTAHQDCKIRVWQLTPTKH------HKLKTTLPTVNDRLLR 190 (437)
Q Consensus 122 wd~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~-~--l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~ 190 (437)
||+... .......+ .+|...|.+++|+++ . |++++.||.|++||+.+++. .....
T Consensus 94 w~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~----------- 159 (416)
T 2pm9_A 94 YSTNEANNAINSMARF---SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG----------- 159 (416)
T ss_dssp ECCSSTTSCCCEEEEC---CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC-----------
T ss_pred eecccccccccchhhc---cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc-----------
Confidence 999872 12233333 579999999999965 3 99999999999999987751 11111
Q ss_pred ecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecc------cccEEEEEEe
Q 013717 191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAH------EDAVNAVAVS 261 (437)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~ 261 (437)
.+..|...|.+++|++ .++++++.||.|++||+++++.+..+..+ ...|.+++|+
T Consensus 160 ----------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 160 ----------------QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp ----------------CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred ----------------cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence 1135889999999987 68999999999999999999998888765 7889999999
Q ss_pred cCC-e-EEEEeCCC---eEEEecCCCCcccceeeEEee-CccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceE
Q 013717 262 AGG-T-VYTGSADR---KIRVWAKPFNEKRHALIATLE-KHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMV 334 (437)
Q Consensus 262 ~~~-~-l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 334 (437)
|++ . +++++.|+ .|++||++... .....+. +|...|.+++|+| ++++|++++.||.|++||+++++
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~---- 296 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNAN---TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE---- 296 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTT---SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC----
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCC---CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc----
Confidence 997 3 89999998 99999997643 2445566 7899999999999 99999999999999999998875
Q ss_pred EeeeecccccceEEEEeeC---CEEEEEeCCCcEEEeeCCCCCCeeee--------------------------------
Q 013717 335 VTGALRGHGKAILCLINVA---GLLMSGSADRTVRIWQRGSDGRFGCL-------------------------------- 379 (437)
Q Consensus 335 ~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------------------- 379 (437)
....+.+|...|.++++++ .+|++++.||.|++||+.........
T Consensus 297 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (416)
T 2pm9_A 297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL 376 (416)
T ss_dssp EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence 4445667888898888875 49999999999999999876521111
Q ss_pred eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
.....|..++.+++|+|++ ++|++++.||.|+||++.++
T Consensus 377 ~~~~~~~~~~~~~~~s~dg-----~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 377 QAPTWYGEPSPAAHWAFGG-----KLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCSTTCCCSCCCEEETTT-----EEECBCTTSSCBCCBCCCCC
T ss_pred cCCccccCCccceEEeeCC-----eEEEEeCCCCeEEEEEeccC
Confidence 0111267788999999998 58999999999999999865
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=294.40 Aligned_cols=269 Identities=17% Similarity=0.227 Sum_probs=230.8
Q ss_pred cceeeccc----cccccccCCCceeEEecCCCcc-eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee
Q 013717 60 LSLQTLPS----VPSLQKLSPDETINFSSASHLC-INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT 130 (437)
Q Consensus 60 ~~~~~~~~----~~~~~s~s~dg~i~~~~~~~~~-~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~ 130 (437)
.++.+.|. ...+++++.|+++++|+..... .+...+ +|...|.+++|+ +.++++++.| .|++||+.++ +
T Consensus 36 ~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~--~ 113 (321)
T 3ow8_A 36 WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG--K 113 (321)
T ss_dssp EEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--E
T ss_pred EEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC--C
Confidence 45666653 4579999999999999986543 344556 999999999999 8899999999 9999999985 3
Q ss_pred eeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717 131 SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW 208 (437)
Q Consensus 131 ~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (437)
.+..+ ..|...+.+++|+|+. |++++.||.|++|++++++....+
T Consensus 114 ~~~~~---~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~------------------------------ 160 (321)
T 3ow8_A 114 QIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL------------------------------ 160 (321)
T ss_dssp EEEEE---ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE------------------------------
T ss_pred EEEEE---eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe------------------------------
Confidence 44444 4578889999999775 999999999999999877543222
Q ss_pred ecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc
Q 013717 209 IEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK 285 (437)
Q Consensus 209 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~ 285 (437)
..|...|.+++|+| ++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++. |++|+.||.|++||++..
T Consensus 161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-- 238 (321)
T 3ow8_A 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-- 238 (321)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC--
T ss_pred cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc--
Confidence 35778899999998 8999999999999999999999999999999999999999998 999999999999998754
Q ss_pred cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC
Q 013717 286 RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR 363 (437)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg 363 (437)
.....+.+|...|.+++|+|++++|++++.|++|++||+++++ ....+.+|...|.+++++++ +|++++.||
T Consensus 239 --~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 239 --NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT----CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred --ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE----EEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 3567788999999999999999999999999999999998765 44556789999999999865 999999999
Q ss_pred cEEEeeCC
Q 013717 364 TVRIWQRG 371 (437)
Q Consensus 364 ~i~iwd~~ 371 (437)
.|++||..
T Consensus 313 ~i~vwd~p 320 (321)
T 3ow8_A 313 EIHIYDCP 320 (321)
T ss_dssp CEEEEECC
T ss_pred eEEEEeCC
Confidence 99999964
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.7e-39 Score=290.47 Aligned_cols=316 Identities=15% Similarity=0.227 Sum_probs=260.8
Q ss_pred cccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT 134 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~ 134 (437)
....+.+.|+...++....++.+..|...........++|...|.+++|+ +++|++++ | .|++||+.++.......
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~ 89 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS 89 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeee
Confidence 34578899999998888777777777776666666666999999999999 88999999 7 99999998753221111
Q ss_pred cccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717 135 FNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG 212 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (437)
.....+|...|.+++|+++. |++++.||.|++||+.+++.... ..+..|.
T Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----------------------------~~~~~~~ 141 (337)
T 1gxr_A 90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK----------------------------AELTSSA 141 (337)
T ss_dssp EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE----------------------------EEEECSS
T ss_pred cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee----------------------------eecccCC
Confidence 11113689999999999765 99999999999999987652111 1224588
Q ss_pred CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccccee
Q 013717 213 DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHAL 289 (437)
Q Consensus 213 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~ 289 (437)
..|.+++|++ +++++++.||.|++||+++++.+..+..|...|.+++|+|++. +++++.||.|++||++... .
T Consensus 142 ~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~----~ 217 (337)
T 1gxr_A 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR----Q 217 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----E
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc----e
Confidence 9999999998 7999999999999999999999999999999999999999998 9999999999999987543 3
Q ss_pred eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEE
Q 013717 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRI 367 (437)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~i 367 (437)
+..+ .+...+.+++|+|++++|++++.|+.|++||+++.+. ..+..|...+.++.++++ +|++++.||.|++
T Consensus 218 ~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 218 LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred Eeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----EEEcCCccceeEEEECCCCCEEEEecCCCcEEE
Confidence 4444 3678899999999999999999999999999987642 235678899999998854 9999999999999
Q ss_pred eeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 368 WQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 368 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
||+.+++ .+. ...|...|.+++|+|++. +|++++.||.|++|++.
T Consensus 292 ~~~~~~~---~~~-~~~~~~~v~~~~~s~~~~-----~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 292 WRTPYGA---SIF-QSKESSSVLSCDISVDDK-----YIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EETTTCC---EEE-EEECSSCEEEEEECTTSC-----EEEEEETTSCEEEEEEE
T ss_pred EECCCCe---EEE-EecCCCcEEEEEECCCCC-----EEEEecCCCeEEEEEEe
Confidence 9999876 333 345889999999999884 79999999999999974
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.1e-40 Score=295.15 Aligned_cols=274 Identities=15% Similarity=0.099 Sum_probs=220.6
Q ss_pred cceeeccccccccccCCCceeEEecCC-----------CcceeeeecCccCCeEEEEee-CCEEEEEecC-eEEEEeCCC
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSAS-----------HLCINSVQLGHKLPIGCIAVH-HNFLYAASSH-EINVYDRTG 126 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~-----------~~~~~~~~~~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~ 126 (437)
.++.|.|....+++.+ |+++++|+.. ....+...+.|...|.+++|+ .+.|++|+.| .|+|||+.+
T Consensus 34 ~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~ 112 (344)
T 4gqb_B 34 EAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDE 112 (344)
T ss_dssp EEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECT
T ss_pred EEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccC
Confidence 4789999999888777 7777777631 111222223677899999999 7889999999 999999998
Q ss_pred CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecc
Q 013717 127 TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHK 204 (437)
Q Consensus 127 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (437)
++......+ ...+|.+.|++++|+++. |++|+.|++|++||+.+++....+
T Consensus 113 ~~~~~~~~~-~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~-------------------------- 165 (344)
T 4gqb_B 113 NETLIVSKF-CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY-------------------------- 165 (344)
T ss_dssp TSSCEEEEE-EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--------------------------
T ss_pred CCceeEeec-cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE--------------------------
Confidence 643332221 124799999999999765 999999999999999987644332
Q ss_pred ceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe--EEEEeCCCeEEE
Q 013717 205 KKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT--VYTGSADRKIRV 277 (437)
Q Consensus 205 ~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--l~~~~~dg~v~i 277 (437)
.+|...|.+++|++ .++++++.|++|++||+++++....+. .+...+.+++|+|++. +++|+.||.|++
T Consensus 166 ----~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~ 241 (344)
T 4gqb_B 166 ----RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL 241 (344)
T ss_dssp ----CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred ----cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEE
Confidence 46999999999987 578999999999999999999888775 4566799999999654 789999999999
Q ss_pred ecCCCCcccceeeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--
Q 013717 278 WAKPFNEKRHALIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-- 354 (437)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 354 (437)
||++.. +.+..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++ + ..+.+|...|.+++|+++
T Consensus 242 wd~~~~----~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----~-~~~~~H~~~V~~v~~sp~~~ 312 (344)
T 4gqb_B 242 VDTKST----SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----L-FRSQAHRDFVRDATWSPLNH 312 (344)
T ss_dssp EESCC------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----E-EEECCCSSCEEEEEECSSST
T ss_pred EECCCC----cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----E-EEEcCCCCCEEEEEEeCCCC
Confidence 998754 3677888999999999999998 589999999999999998764 2 235789999999999754
Q ss_pred -EEEEEeCCCcEEEeeCCCCC
Q 013717 355 -LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 355 -~l~~~~~dg~i~iwd~~~~~ 374 (437)
+|++++.||+|++|++.+..
T Consensus 313 ~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TEEEEEETTSCEEEEECCC--
T ss_pred eEEEEEcCCCeEEEEECCCCC
Confidence 78899999999999998744
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.1e-40 Score=291.92 Aligned_cols=243 Identities=23% Similarity=0.356 Sum_probs=212.1
Q ss_pred CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.+|.+.|.+++|+|+. |++++.||+|++||+.+++....+ ..|..+|.
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~------------------------------~~~~~~v~ 59 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI------------------------------QVTETPVR 59 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE------------------------------ECCSSCEE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe------------------------------eccCCcEE
Confidence 5799999999999876 999999999999999887643322 35889999
Q ss_pred EEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717 217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL 293 (437)
Q Consensus 217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 293 (437)
+++|++ ++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++. |++|+.||.|++||++... .....+
T Consensus 60 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~ 136 (304)
T 2ynn_A 60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTF 136 (304)
T ss_dssp EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---EEEEEE
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---chhhhh
Confidence 999988 8999999999999999999999999999999999999999998 9999999999999986542 355678
Q ss_pred eCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee----CCEEEEEeCCCcEEEe
Q 013717 294 EKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV----AGLLMSGSADRTVRIW 368 (437)
Q Consensus 294 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~dg~i~iw 368 (437)
.+|...|.+++|+| ++.+|++|+.|++|++||++.......+ ..+|...+..+.+. +.+|++|+.|++|++|
T Consensus 137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iW 213 (304)
T 2ynn_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213 (304)
T ss_dssp CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEE
T ss_pred cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 89999999999999 6789999999999999999876654433 23455667777664 3499999999999999
Q ss_pred eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
|+++++ ++..+.+|...|.+++|+|++. +|++|+.||+|++||+.+++.
T Consensus 214 d~~~~~---~~~~~~~h~~~v~~~~~~p~~~-----~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 214 DYQTKS---CVATLEGHMSNVSFAVFHPTLP-----IIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp ETTTTE---EEEEEECCSSCEEEEEECSSSS-----EEEEEETTSCEEEEETTTCCE
T ss_pred eCCCCc---cceeeCCCCCCEEEEEECCCCC-----EEEEEcCCCeEEEEECCCCce
Confidence 999865 8899999999999999999885 799999999999999987754
No 27
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.8e-40 Score=293.49 Aligned_cols=270 Identities=20% Similarity=0.297 Sum_probs=230.9
Q ss_pred cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce--ee
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW--TS 131 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~--~~ 131 (437)
...++.+.|....+++++.||+|++|+...... ...+ .|...|.+++|+ +++|++|+.| .|++||+.++.. ..
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 135 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV 135 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee
Confidence 335788999999999999999999999876544 4455 999999999999 8999999999 999999987422 23
Q ss_pred eeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717 132 INTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE 210 (437)
Q Consensus 132 ~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (437)
...+ .+|.+.|.++.|+++. +++++.|++|++||+.+++....+ .+
T Consensus 136 ~~~~---~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~------------------------------~~ 182 (340)
T 1got_B 136 SREL---AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF------------------------------TG 182 (340)
T ss_dssp EEEE---ECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE------------------------------CC
T ss_pred EEEe---cCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEE------------------------------cC
Confidence 3333 5799999999999655 999999999999999987643322 36
Q ss_pred CCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717 211 HGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
|...|.+++|+| .++++|+.||.|++||+++++++..+.+|...|++++|+|++. |++|+.||.|++||++...
T Consensus 183 h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~--- 259 (340)
T 1got_B 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--- 259 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc---
Confidence 999999999998 7999999999999999999999999999999999999999998 9999999999999987543
Q ss_pred eeeEEee--CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC
Q 013717 288 ALIATLE--KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR 363 (437)
Q Consensus 288 ~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg 363 (437)
.+..+. .+...|.+++|+|+|++|++|+.||.|++||+.+++ ....+.+|...|.++.++++ +|++|+.||
T Consensus 260 -~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~----~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 260 -ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp -EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred -EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc----EeeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence 333333 233579999999999999999999999999998765 44456789999999998865 999999999
Q ss_pred cEEEee
Q 013717 364 TVRIWQ 369 (437)
Q Consensus 364 ~i~iwd 369 (437)
.|+|||
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999997
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-40 Score=304.24 Aligned_cols=330 Identities=11% Similarity=0.107 Sum_probs=261.1
Q ss_pred ccccceeeccccc-cccccCCCceeEEecC----CCcce-----eeeec-C----------ccCCeEEEEee--CCEEEE
Q 013717 57 QSNLSLQTLPSVP-SLQKLSPDETINFSSA----SHLCI-----NSVQL-G----------HKLPIGCIAVH--HNFLYA 113 (437)
Q Consensus 57 ~~~~~~~~~~~~~-~~~s~s~dg~i~~~~~----~~~~~-----~~~~~-~----------h~~~V~~l~~~--~~~l~s 113 (437)
....++.+.|... .+++++.||.|.+|+. ..... ....+ . |.+.|.+++|+ +++|++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 3456889999999 9999999999999999 65442 22333 2 68899999999 899999
Q ss_pred EecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceee
Q 013717 114 ASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLR 190 (437)
Q Consensus 114 ~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 190 (437)
|+.+ .|++||... .....+ .+|...|.+++|+++. |++++.||.|++||+.+++....+..........
T Consensus 126 ~~~dg~i~i~~~~~---~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-- 197 (425)
T 1r5m_A 126 GVENGELRLWNKTG---ALLNVL---NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI-- 197 (425)
T ss_dssp EETTSCEEEEETTS---CEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EeCCCeEEEEeCCC---Ceeeec---cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce--
Confidence 9999 999999443 334444 5699999999999765 9999999999999998876544433211000000
Q ss_pred ecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEE
Q 013717 191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYT 268 (437)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~ 268 (437)
...........+.++.|++ ..+++++.||.|++||+.+++.+..+..|...|.+++|+|++. |++
T Consensus 198 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 198 -------------NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp ---------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred -------------eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 0000011223378888888 8899999999999999999999999989999999999999998 999
Q ss_pred EeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEE
Q 013717 269 GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILC 348 (437)
Q Consensus 269 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 348 (437)
++.||.|++||++... .+..+..|...|.+++|+|++ ++++++.||.|++||+++++ ....+..|...+.+
T Consensus 265 ~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~ 335 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGN----SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT----LLALSIVDGVPIFA 335 (425)
T ss_dssp EETTSCEEEECSSSBS----CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE----EEEEEECTTCCEEE
T ss_pred EcCCCEEEEEECCCCc----cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc----EeEecccCCccEEE
Confidence 9999999999987543 566677899999999999999 99999999999999998765 44445678889999
Q ss_pred EEeeCC--EEEEEeCCCcEEEeeCCCCC-----------------CeeeeeeecCCCC--CeeEEEEEccCCCCceEEEE
Q 013717 349 LINVAG--LLMSGSADRTVRIWQRGSDG-----------------RFGCLAVLEGHTK--PVKSLTAVTEEGQNGVVSVF 407 (437)
Q Consensus 349 ~~~~~~--~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~l~ 407 (437)
+.++++ +|++++.||.|++||+.+.+ ...++..+.+|.. .|++++|+|++. +|+
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~ 410 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN-----KIS 410 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS-----EEE
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc-----eEE
Confidence 888754 99999999999999997643 1126788889977 999999999984 799
Q ss_pred EecCCCcEEEEeec
Q 013717 408 SGSLDGEIRAWQVS 421 (437)
Q Consensus 408 s~~~dg~i~iw~~~ 421 (437)
+++.||.|++|+++
T Consensus 411 ~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 411 VAYSLQEGSVVAIP 424 (425)
T ss_dssp EEESSSCCEEEECC
T ss_pred EEecCceEEEEeec
Confidence 99999999999986
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=292.69 Aligned_cols=285 Identities=20% Similarity=0.326 Sum_probs=232.2
Q ss_pred cceeeccccccccccCCCceeEEecCCCcce-eeee-c-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCI-NSVQ-L-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN 133 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~-~~~~-~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~ 133 (437)
..+.+.|....+++++.|++|++|+...... +... . +|...|.+++|+ +++|++|+.| .|++||...+..+...
T Consensus 20 ~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~ 99 (345)
T 3fm0_A 20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVT 99 (345)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEE
Confidence 4688999999999999999999999866542 2222 3 899999999999 8999999999 9999999886556666
Q ss_pred ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
.+ .+|...|.+++|+|+. |++++.|++|++||+.++...... ..+.+|
T Consensus 100 ~~---~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~---------------------------~~~~~h 149 (345)
T 3fm0_A 100 TL---EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV---------------------------SVLNSH 149 (345)
T ss_dssp EE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE---------------------------EEECCC
T ss_pred Ec---cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE---------------------------EEecCc
Confidence 65 6899999999999765 999999999999999876432222 123469
Q ss_pred CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc--eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc-
Q 013717 212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR--CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK- 285 (437)
Q Consensus 212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~- 285 (437)
...|.+++|+| .+|++|+.|+.|++||.++++ +...+.+|...|++++|+|++. |++|+.||.|++||......
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 99999999998 899999999999999998775 4567789999999999999998 99999999999998632211
Q ss_pred ----------cceeeEEeeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc----eEE-eeeecccccceEEE
Q 013717 286 ----------RHALIATLEK-HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH----MVV-TGALRGHGKAILCL 349 (437)
Q Consensus 286 ----------~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~-~~~~~~~~~~i~~~ 349 (437)
....+..+.+ |...|.+++|+|++..|++++.|+.|++|+....... ..+ .....+|...|.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 309 (345)
T 3fm0_A 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309 (345)
T ss_dssp TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence 1233444544 7889999999999999999999999999998754321 111 22346899999999
Q ss_pred EeeCC---EEEEEeCCCcEEEeeCCCCC
Q 013717 350 INVAG---LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 350 ~~~~~---~l~~~~~dg~i~iwd~~~~~ 374 (437)
+|+++ +|++|+.||+|++|++...+
T Consensus 310 ~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 310 AWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred EEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 99864 89999999999999999866
No 30
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-39 Score=283.87 Aligned_cols=287 Identities=24% Similarity=0.346 Sum_probs=244.3
Q ss_pred Ccceeeeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC
Q 013717 87 HLCINSVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD 161 (437)
Q Consensus 87 ~~~~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 161 (437)
...++...+ +|.+.|.+++|. +++|++|+.| .|++||+.++.. ...+ ..|...|.+++|+++. |++++.|
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d 80 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWL--GTVV---YTGQGFLNSVCYDSEKELLLFGGKD 80 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEE--EEEE---EECSSCEEEEEEETTTTEEEEEETT
T ss_pred ccHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEE--EEEe---ecCCccEEEEEECCCCCEEEEecCC
Confidence 345667777 999999999998 9999999999 999999988533 3333 3589999999999765 9999999
Q ss_pred CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCC
Q 013717 162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASD 241 (437)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~ 241 (437)
|.|++|++.......... .+.+|...|.++.++++++++++.||.|++|| .
T Consensus 81 g~i~~~~~~~~~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~ 131 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLY---------------------------TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--E 131 (313)
T ss_dssp SCEEEEETTCCTTSCC-C---------------------------EECCCSSCEEEEEEETTEEEEEETTSEEEEEE--T
T ss_pred CeEEEEEeeecCCCCccc---------------------------chhhcccCEEEEEecCCEEEEEeCCCCEEEEc--C
Confidence 999999998754332222 22469999999999889999999999999999 6
Q ss_pred cceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEEeCC
Q 013717 242 LRCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSGACD 318 (437)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d 318 (437)
++.+..+..|...+.++++.| ++. +++++.||.|++||.. .....+.. |...+.+++|+|++. +++++.|
T Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d 204 (313)
T 3odt_A 132 GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND------KVIKTFSGIHNDVVRHLAVVDDGH-FISCSND 204 (313)
T ss_dssp TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT------EEEEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC------ceEEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence 778888889999999999998 666 9999999999999832 34556666 889999999999998 9999999
Q ss_pred CcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717 319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
|.|++||+++++ ....+.+|...+.++.++++ .|++++.||.|++||+.+++ ++..+..|...|.+++|+|+
T Consensus 205 g~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~ 277 (313)
T 3odt_A 205 GLIKLVDMHTGD----VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS---LKQVITLPAISIWSVDCMSN 277 (313)
T ss_dssp SEEEEEETTTCC----EEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCC---EEEEEECSSSCEEEEEECTT
T ss_pred CeEEEEECCchh----hhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCc---eeEEEeccCceEEEEEEccC
Confidence 999999998776 44456779999999999876 89999999999999999876 78888999999999999998
Q ss_pred CCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717 398 EGQNGVVSVFSGSLDGEIRAWQVSVSCPNS 427 (437)
Q Consensus 398 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 427 (437)
+ .+++++.||.|++|+++.++...
T Consensus 278 ~------~~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 278 G------DIIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp S------CEEEEETTSCEEEEESCGGGCCC
T ss_pred C------CEEEEeCCCcEEEEeCCCCceee
Confidence 8 37789999999999999876544
No 31
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.4e-39 Score=299.21 Aligned_cols=296 Identities=14% Similarity=0.138 Sum_probs=239.5
Q ss_pred eeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCc----eeeeeccccCCCCcccEEEEEEeCC--------e-
Q 013717 90 INSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTT----WTSINTFNDNDSSSGSVKSVTFCDG--------K- 154 (437)
Q Consensus 90 ~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~----~~~~~~~~~~~~h~~~v~~l~~~~~--------~- 154 (437)
.....+ +|.+.|++++|++++|++|+.| .|++||+.+++ ......+ .+|...|.+++|+++ .
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH---FVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEE---ECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEE---ecCCCcEEEEEEecccccCCccccE
Confidence 344556 9999999999999999999999 99999999864 1233333 479999999999954 5
Q ss_pred EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC-----CCcEEEEEeC----C--C
Q 013717 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH-----GDAVTGLAVN----N--G 223 (437)
Q Consensus 155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~--~ 223 (437)
|++++.||.|++||+.+++..... ....+..| ...|.+++|+ + .
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 138 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKV-------------------------IFEKLDLLDSDMKKHSFWALKWGASNDRLLS 138 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCE-------------------------EEEEECCSCTTGGGSCEEEEEEECCC----C
T ss_pred EEEEcCCCCEEEEEccCCcccccc-------------------------cceeecccccccCCCcEEEEEEeeccCCCCc
Confidence 999999999999999876531000 00112245 5899999999 7 7
Q ss_pred e-EEEEECCCcEEEEECCC------cceEE-----Eee-------cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCc
Q 013717 224 L-IYSVSWDKSLKIWRASD------LRCLE-----SIK-------AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNE 284 (437)
Q Consensus 224 ~-l~~~~~dg~i~iwd~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 284 (437)
+ |++++.||.|++||+.+ ++.+. .+. .|...|.+++|+|++.+++++.||.|++||++..
T Consensus 139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~- 217 (397)
T 1sq9_A 139 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL- 217 (397)
T ss_dssp EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT-
T ss_pred eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC-
Confidence 8 99999999999999998 66665 663 4788999999999888888999999999998754
Q ss_pred ccceeeEEeeC---c---cccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEEeeeecc-------------c
Q 013717 285 KRHALIATLEK---H---KSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVVTGALRG-------------H 342 (437)
Q Consensus 285 ~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~-------------~ 342 (437)
+.+..+.. | ...|.+++|+|++++|++++.| |.|++||+++++. ...+.+ |
T Consensus 218 ---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~ 290 (397)
T 1sq9_A 218 ---RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER----IGSLSVPTHSSQASLGEFAH 290 (397)
T ss_dssp ---EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE----EEEECBC--------CCBSB
T ss_pred ---ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc----cceeccCccccccccccccc
Confidence 46677777 8 8999999999999999999999 9999999987753 334555 8
Q ss_pred ccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeeeeec------CC---------------CCCeeEEEEEccCC
Q 013717 343 GKAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLAVLE------GH---------------TKPVKSLTAVTEEG 399 (437)
Q Consensus 343 ~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~h---------------~~~v~~l~~~~~~~ 399 (437)
...|.++.+++ .+|++++.||.|++||+.+++ ++..+. +| ...|++++|+|++.
T Consensus 291 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE---RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 89999999874 499999999999999999866 677777 77 99999999999962
Q ss_pred C-----CceEEEEEecCCCcEEEEeeccCC
Q 013717 400 Q-----NGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 400 ~-----~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
. ....+|++++.||.|++|++++++
T Consensus 368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 368 RSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp SBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccccccceEEEecCCCcEEEEEcCCCC
Confidence 0 000289999999999999998763
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3e-39 Score=299.43 Aligned_cols=319 Identities=16% Similarity=0.189 Sum_probs=250.1
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
..+.+.|....+++++.||.+.+|+...... ...+ +| ..+....++ +++|++|+.| .|++||+.++ +....+
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~ 135 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDG-SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN--LQREID 135 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEET-TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC--EEEEET
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccce-eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc--ceeeec
Confidence 3678999999999999999999999866433 3334 55 334444555 8999999999 9999999985 333333
Q ss_pred ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717 136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD 213 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
.+|...|.+++|+++. |++++.|+.|++||+.+++.... +.+|..
T Consensus 136 ---~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~------------------------------~~~h~~ 182 (420)
T 3vl1_A 136 ---QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT------------------------------LIGHRA 182 (420)
T ss_dssp ---TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE------------------------------EECCSS
T ss_pred ---ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE------------------------------EcCCCC
Confidence 5799999999999765 99999999999999987754332 246999
Q ss_pred cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec---ccccEEEE---------------------EEecCCe-E
Q 013717 214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA---HEDAVNAV---------------------AVSAGGT-V 266 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~---------------------~~~~~~~-l 266 (437)
.|.+++|+| ++|++++.||.|++||+++++.+..+.. +...|.++ +|+|++. +
T Consensus 183 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (420)
T 3vl1_A 183 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV 262 (420)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEE
Confidence 999999998 8999999999999999999999888874 34445554 4578888 9
Q ss_pred EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC-EEEEEeCCCcEEEEECCCCccceEEeeeecccccc
Q 013717 267 YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT-VLFSGACDRSILVWDREDSANHMVVTGALRGHGKA 345 (437)
Q Consensus 267 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 345 (437)
++|+.||.|++||++... ........|...|.+++|+|+++ +|++|+.||.|++||+++++...... ...|...
T Consensus 263 ~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~~~ 337 (420)
T 3vl1_A 263 IAGHVSGVITVHNVFSKE---QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF--LINEGTP 337 (420)
T ss_dssp EEEETTSCEEEEETTTCC---EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE--EESTTSC
T ss_pred EEEcCCCeEEEEECCCCc---eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh--hccCCCC
Confidence 999999999999987654 22333345788999999999999 99999999999999999875422221 1226677
Q ss_pred eEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCe------eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717 346 ILCLINVAG-LLMSGSADRTVRIWQRGSDGRF------GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418 (437)
Q Consensus 346 i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw 418 (437)
+.++.+.+. +|++++.||.|++|++...... .....+.+|.+.|.+++|+|++... + .+++++.+|.+.+|
T Consensus 338 v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-g-~l~a~g~~g~~~~~ 415 (420)
T 3vl1_A 338 INNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESN-G-EVLEVGKNNFCALY 415 (420)
T ss_dssp EEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSS-C-EEEEEETTTEEEEE
T ss_pred ceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCc-c-eEEEEcCCceEEEE
Confidence 777776644 9999999999999999875422 1233566789999999999988411 1 47777788999999
Q ss_pred eecc
Q 013717 419 QVSV 422 (437)
Q Consensus 419 ~~~~ 422 (437)
+++.
T Consensus 416 ~~~~ 419 (420)
T 3vl1_A 416 NLSN 419 (420)
T ss_dssp ESCC
T ss_pred eccC
Confidence 9875
No 33
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.6e-38 Score=295.20 Aligned_cols=277 Identities=27% Similarity=0.457 Sum_probs=242.5
Q ss_pred eeec-CccCC-eEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEe
Q 013717 92 SVQL-GHKLP-IGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQ 168 (437)
Q Consensus 92 ~~~~-~h~~~-V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd 168 (437)
...+ +|.+. +.|+.+++++|++|+.| .|++||+.++ +....+ .+|.+.|.+++|+++.+++|+.||+|++||
T Consensus 111 ~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~--~~~~~~---~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 111 PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTL---VGHTGGVWSSQMRDNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTC--CEEEEC---CCCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred eEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCC--cEEEEE---cCCCCCEEEEEecCCEEEEEeCCCeEEEEE
Confidence 3455 99886 58888889999999999 9999999985 444444 579999999999988899999999999999
Q ss_pred CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEe
Q 013717 169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI 248 (437)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (437)
+.+++....+ .+|...|.++.++++.+++|+.||.|++||+.+++.+..+
T Consensus 186 ~~~~~~~~~~------------------------------~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 186 AETGECIHTL------------------------------YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp TTTTEEEEEE------------------------------CCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred CCcCcEEEEE------------------------------CCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 9987644332 3699999999999999999999999999999999999999
Q ss_pred ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717 249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327 (437)
Q Consensus 249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (437)
..|...|.++++ ++. +++|+.||.|++||++.. ..+..+.+|...|.+++| +++++++++.||.|++||++
T Consensus 236 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~ 307 (445)
T 2ovr_B 236 MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE----TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE 307 (445)
T ss_dssp ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT----EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT
T ss_pred cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC----cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC
Confidence 999999999999 555 999999999999987643 467788889999999999 78899999999999999998
Q ss_pred CCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC---CCCCeeEEEEEccCCCCceE
Q 013717 328 DSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG---HTKPVKSLTAVTEEGQNGVV 404 (437)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~ 404 (437)
+++ ....+.+|...+.++.++++++++|+.||.|++||+++++ ++..+.+ |...|++++|++.
T Consensus 308 ~~~----~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~------- 373 (445)
T 2ovr_B 308 TGN----CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ---CLQTLQGPNKHQSAVTCLQFNKN------- 373 (445)
T ss_dssp TCC----EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC---EEEEECSTTSCSSCEEEEEECSS-------
T ss_pred CCC----EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc---EEEEEccCCCCCCCEEEEEECCC-------
Confidence 876 4445678899999999999999999999999999999876 6666665 8899999999642
Q ss_pred EEEEecCCCcEEEEeeccCCC
Q 013717 405 SVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 405 ~l~s~~~dg~i~iw~~~~~~~ 425 (437)
+|++|+.||.|++||+.+++.
T Consensus 374 ~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp EEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEeCCCeEEEEECCCCce
Confidence 799999999999999998764
No 34
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-38 Score=291.04 Aligned_cols=291 Identities=15% Similarity=0.119 Sum_probs=230.3
Q ss_pred ceeeeec-CccCCeEEEEee--C-CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC-Ce--EEEEec
Q 013717 89 CINSVQL-GHKLPIGCIAVH--H-NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD-GK--IFTAHQ 160 (437)
Q Consensus 89 ~~~~~~~-~h~~~V~~l~~~--~-~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~--l~s~~~ 160 (437)
......+ +|...|.+++|+ + ++|++|+.| .|++||+.++........ .+|...|.+++|++ +. |++++.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG---MGPGDAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC---CSTTCBEEEEEEETTEEEEEEEEET
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec---CCcCCceeEEEeCCCCCCEEEEEeC
Confidence 3444566 999999999999 5 899999999 999999998655444433 46999999999998 43 999999
Q ss_pred CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEE
Q 013717 161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWR 238 (437)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd 238 (437)
|+.|++||+.+.. ...+... ..|...|.+++|++ .++++|+.||.|++||
T Consensus 140 d~~i~iwd~~~~~-~~~~~~~---------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 191 (383)
T 3ei3_B 140 RGATTLRDFSGSV-IQVFAKT---------------------------DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLG 191 (383)
T ss_dssp TTEEEEEETTSCE-EEEEECC---------------------------CCSSCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCCc-eEEEecc---------------------------CCCCCCeEEEEECCCCCEEEEECCCCCEEEEE
Confidence 9999999998532 1111110 13568899999998 8999999999999999
Q ss_pred CCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEE
Q 013717 239 ASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSG 315 (437)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 315 (437)
+ +++.+..+..|...|.+++|+|++. +++++.|+.|++||++........+..+ +|...|.+++|+| ++++|+++
T Consensus 192 ~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 192 L-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp T-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEE
T ss_pred C-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEE
Confidence 9 5778889999999999999999986 8999999999999998644444555555 5899999999999 99999999
Q ss_pred eCCCcEEEEECCCCccceEEeeee---ccccc----------ceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeee
Q 013717 316 ACDRSILVWDREDSANHMVVTGAL---RGHGK----------AILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381 (437)
Q Consensus 316 ~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~----------~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~ 381 (437)
+.|+.|++||+++++....+.... ..|.. .+..+.++++ .+ +|+.||.|++||+.+++ ++..
T Consensus 270 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~---~~~~ 345 (383)
T 3ei3_B 270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGG---LVHQ 345 (383)
T ss_dssp ESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCC---EEEE
T ss_pred cCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCc---eeee
Confidence 999999999999876654443221 11222 2233333322 22 77899999999999877 6777
Q ss_pred ecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 382 LEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 382 ~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
+.+ |...+..++|+|++. +|++|+ ||.|++||+++
T Consensus 346 l~~~~~~~~~~~~~~s~~g~-----~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 346 LRDPNAAGIISLNKFSPTGD-----VLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECBTTBCSCCCEEEECTTSS-----EEEEEE-TTEEEEEECC-
T ss_pred ecCCCCCceEEEEEEecCcc-----EEEEec-CCcEEEEecCC
Confidence 776 567788889999884 788887 99999999975
No 35
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.6e-39 Score=293.11 Aligned_cols=293 Identities=16% Similarity=0.231 Sum_probs=235.0
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT 170 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~ 170 (437)
.|.++|.+++|+ +++|++|+.+ .|++||+.+++......+ .+|...|.+++|+++. |++++.||.|++||+.
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL---KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE---ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee---cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 689999999999 8999999999 999999998754456665 5799999999999665 9999999999999998
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcce---E
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRC---L 245 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~---~ 245 (437)
+++...... +..|...|.+++|++ +++++++.||.|++||+..++. .
T Consensus 83 ~~~~~~~~~----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 134 (372)
T 1k8k_C 83 GRTWKPTLV----------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 134 (372)
T ss_dssp TTEEEEEEE----------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred CCeeeeeEE----------------------------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence 765322221 134888999999998 8999999999999999988763 3
Q ss_pred EEe-ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC--------------cccceeeEEeeCccccEEEEEEccCC
Q 013717 246 ESI-KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN--------------EKRHALIATLEKHKSAVNALALSDDG 309 (437)
Q Consensus 246 ~~~-~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~--------------~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (437)
..+ ..|...|.+++|+|++. +++++.||.|++||++.. ......+..+..|...|.+++|+|++
T Consensus 135 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 214 (372)
T 1k8k_C 135 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 214 (372)
T ss_dssp EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC
Confidence 333 46789999999999998 999999999999997421 12345677788899999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCC--CC-----------
Q 013717 310 TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGS--DG----------- 374 (437)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~--~~----------- 374 (437)
++|++++.||.|++||+++++ ....+..|...+.++.++++ +|++| .|+.|++|++.. +.
T Consensus 215 ~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~ 289 (372)
T 1k8k_C 215 SRVAWVSHDSTVCLADADKKM----AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPK 289 (372)
T ss_dssp SEEEEEETTTEEEEEEGGGTT----EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-
T ss_pred CEEEEEeCCCEEEEEECCCCc----eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccc
Confidence 999999999999999998776 34445678888988888754 66655 999999999987 31
Q ss_pred ------------------Ceeee------eee-cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 375 ------------------RFGCL------AVL-EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 375 ------------------~~~~~------~~~-~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
..... ..+ .+|..+|++++|.+.++ .+..+|++|+.||.|++|++++++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g-~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 290 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK-AKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp -------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT-TSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCC-cceeeEEEecCCCceEEEEecChhH
Confidence 00010 233 48999999999886543 0001899999999999999987653
No 36
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.7e-39 Score=297.77 Aligned_cols=276 Identities=25% Similarity=0.427 Sum_probs=233.4
Q ss_pred CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcc
Q 013717 96 GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKH 174 (437)
Q Consensus 96 ~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~ 174 (437)
+|...|.|+++++++|++|+.| .|++||+.++ +....+ .+|...|.+++|.++.|++|+.||+|++||+.+++.
T Consensus 131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~--~~~~~~---~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL--ECKRIL---TGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp SSCCCEEEEECCSSEEEEEESSSCEEEEESSSC--CEEEEE---CCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCE
T ss_pred CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCC--eEEEEE---cCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcE
Confidence 7888999999999999999999 9999999985 344444 579999999999777799999999999999998764
Q ss_pred cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceE---EEeecc
Q 013717 175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCL---ESIKAH 251 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~ 251 (437)
...+ .+|...|.+++++++.+++|+.||.|++||+.+++.. ..+.+|
T Consensus 206 ~~~~------------------------------~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 255 (435)
T 1p22_A 206 LNTL------------------------------IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255 (435)
T ss_dssp EEEE------------------------------CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred EEEE------------------------------cCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence 3332 3589999999999999999999999999999988765 566789
Q ss_pred cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 013717 252 EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA 330 (437)
Q Consensus 252 ~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (437)
...|.++++ ++. +++|+.||.|++||++.. +.+..+.+|...|.++.++ ++++++|+.||.|++||+++++
T Consensus 256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC----EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC----cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC
Confidence 999999999 444 999999999999998754 4677888999999999994 6799999999999999998876
Q ss_pred cceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCC------eeeeeeecCCCCCeeEEEEEccCCCCceE
Q 013717 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGR------FGCLAVLEGHTKPVKSLTAVTEEGQNGVV 404 (437)
Q Consensus 331 ~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 404 (437)
....+.+|...|.++.+++.+|++|+.||.|++||+..+.. ..++..+.+|.+.|++++| ++.
T Consensus 328 ----~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~----- 396 (435)
T 1p22_A 328 ----CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF----- 396 (435)
T ss_dssp ----EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS-----
T ss_pred ----EEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCC-----
Confidence 44556789999999999999999999999999999865431 1167888999999999999 332
Q ss_pred EEEEecCCCcEEEEeeccCCC
Q 013717 405 SVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 405 ~l~s~~~dg~i~iw~~~~~~~ 425 (437)
+|++++.||.|++||+..+..
T Consensus 397 ~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 397 QIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp CEEECCSSSEEEEEC------
T ss_pred EEEEEeCCCEEEEEECCCCCC
Confidence 699999999999999987754
No 37
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-38 Score=284.14 Aligned_cols=284 Identities=17% Similarity=0.265 Sum_probs=238.3
Q ss_pred eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717 90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK 163 (437)
Q Consensus 90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 163 (437)
.....+ +|.+.|++++|+ +++|++|+.| .|++||+.++ +....+ .+|...|.+++|+++. |++++.||.
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTL---DGHTGTIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--CEEEEE---CCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--hhhhhh---hhcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 333445 999999999999 8999999999 9999999885 444444 5799999999999764 999999999
Q ss_pred EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECC-----CcEEE
Q 013717 164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD-----KSLKI 236 (437)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d-----g~i~i 236 (437)
|++||+.+++...... +...|.+++|++ .++++++.+ |.|++
T Consensus 98 i~iwd~~~~~~~~~~~-------------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~ 146 (369)
T 3zwl_B 98 IKLWDVSNGQCVATWK-------------------------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI 146 (369)
T ss_dssp EEEEETTTCCEEEEEE-------------------------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEE
T ss_pred EEEEECCCCcEEEEee-------------------------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEE
Confidence 9999999876443332 778899999998 899999998 99999
Q ss_pred EECCCcc-----------eEEEeecccc--cEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEE
Q 013717 237 WRASDLR-----------CLESIKAHED--AVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA 302 (437)
Q Consensus 237 wd~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~ 302 (437)
||+.... .+..+..+.. .+.+++|+|++. +++++.||.|++||++... ..+..+..|...|.+
T Consensus 147 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~ 223 (369)
T 3zwl_B 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY---EYVDSIDLHEKSISD 223 (369)
T ss_dssp EEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT---EEEEEEECCSSCEEE
T ss_pred EEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc---EeEEEEecCCCceeE
Confidence 9997653 2334444555 899999999998 9999999999999987532 467778889999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC--------------cEE
Q 013717 303 LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR--------------TVR 366 (437)
Q Consensus 303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg--------------~i~ 366 (437)
++|+|++++|++++.||.|++||+++++....+. +...+.++.++++ ++++++.++ .++
T Consensus 224 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 224 MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred EEECCCCCEEEEecCCceEEEEECCCCceeeeec-----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 9999999999999999999999998876433332 5566777776654 999999888 899
Q ss_pred EeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 367 IWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 367 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
+||..+++ .+..+.+|...|++++|+|++. +|++++.||.|++|+++.+..
T Consensus 299 ~~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~-----~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 299 FYHKIFEE---EIGRVQGHFGPLNTVAISPQGT-----SYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp EEETTTCC---EEEEEECCSSCEEEEEECTTSS-----EEEEEETTSEEEEEEECHHHH
T ss_pred EEecCCCc---chhheecccCcEEEEEECCCCC-----EEEEEcCCCeEEEEECccccc
Confidence 99999877 7888899999999999999874 899999999999999987643
No 38
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.5e-38 Score=291.90 Aligned_cols=281 Identities=20% Similarity=0.311 Sum_probs=232.8
Q ss_pred CeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccc
Q 013717 100 PIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHK 176 (437)
Q Consensus 100 ~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~ 176 (437)
.++.|+|+ +++||+|.+++|+|||..+++......+ .+|...|++|+|++++ |++|+.||+|++||+.+++...
T Consensus 107 y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~---~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM---EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC---CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEe---cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 46789999 8888888745999999999765554444 5788999999999775 9999999999999999886543
Q ss_pred cccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc-ceEEEeecccccE
Q 013717 177 LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-RCLESIKAHEDAV 255 (437)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v 255 (437)
.. .+|...+.++.+++..+++|+.|+.+++||.... ..+..+.+|...+
T Consensus 184 ~~------------------------------~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~ 233 (420)
T 4gga_A 184 NM------------------------------TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 233 (420)
T ss_dssp EE------------------------------CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EE------------------------------eCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccce
Confidence 33 3699999999999999999999999999998764 4567788999999
Q ss_pred EEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC-EEEE--EeCCCcEEEEECCCCcc
Q 013717 256 NAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT-VLFS--GACDRSILVWDREDSAN 331 (437)
Q Consensus 256 ~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~~~ 331 (437)
..+.++|++. +++++.|+.+++||..........+.....|...|.+++|+|++. ++++ |+.|++|++||+.+++.
T Consensus 234 ~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~ 313 (420)
T 4gga_A 234 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 313 (420)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE
T ss_pred eeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc
Confidence 9999999999 999999999999999876665566777888999999999999665 5554 45799999999998764
Q ss_pred ceEEeeeecccccceEEEEeeC--CEEEEEe--CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717 332 HMVVTGALRGHGKAILCLINVA--GLLMSGS--ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF 407 (437)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~ 407 (437)
... +.. ...+.++.+.+ +.+++++ .|+.|+|||+.+++ ++..+.+|.+.|++++|+|++. +|+
T Consensus 314 ~~~----~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~---~v~~l~gH~~~V~~l~~spdg~-----~l~ 380 (420)
T 4gga_A 314 LSA----VDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGA-----TVA 380 (420)
T ss_dssp EEE----EEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSS-----CEE
T ss_pred cee----ecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCC-----EEE
Confidence 332 333 34566666654 4555544 79999999999876 8899999999999999999985 799
Q ss_pred EecCCCcEEEEeeccCCCC
Q 013717 408 SGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 408 s~~~dg~i~iw~~~~~~~~ 426 (437)
||+.||+|+|||+....+.
T Consensus 381 S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 381 SAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEETTTEEEEECCSCSSCC
T ss_pred EEecCCeEEEEECCCCCcc
Confidence 9999999999999876554
No 39
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.8e-38 Score=312.48 Aligned_cols=281 Identities=23% Similarity=0.357 Sum_probs=224.6
Q ss_pred eeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCce---eeeeccccCCCCcccEEEEEEeCCe--EEEEec
Q 013717 91 NSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTW---TSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ 160 (437)
Q Consensus 91 ~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~---~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~ 160 (437)
....+ +|.+.|++++|+ +++|++|+.| .|++||+..... .....+ .+|...|.+++|+++. |++|+.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~---~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL---TGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE---ECCSSCEEEEEECTTSSEEEEEET
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee---cCCCCcEEEEEECCCCCEEEEEeC
Confidence 34456 999999999998 5799999999 999999976422 122233 6799999999999765 999999
Q ss_pred CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEE
Q 013717 161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWR 238 (437)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd 238 (437)
||+|++||+.+++.... +.+|...|.+++|++ ++|++|+.|++|++||
T Consensus 451 Dg~v~vwd~~~~~~~~~------------------------------~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRR------------------------------FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp TSEEEEEETTTTEEEEE------------------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCcEEEEECCCCcceeE------------------------------EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 99999999988754332 346999999999998 8999999999999999
Q ss_pred CCCcceEEEe---ecccccEEEEEEecCC--e-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE
Q 013717 239 ASDLRCLESI---KAHEDAVNAVAVSAGG--T-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL 312 (437)
Q Consensus 239 ~~~~~~~~~~---~~~~~~v~~~~~~~~~--~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (437)
.......... .+|...|.+++|+|++ . +++|+.|+.|++||++.. +....+.+|...|.+++|+|+|++|
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~l 576 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC----KLRSTLAGHTGYVSTVAVSPDGSLC 576 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEeCCCCEE
Confidence 8654333322 3688889999999986 3 999999999999998754 3667788999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCC------
Q 013717 313 FSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH------ 385 (437)
Q Consensus 313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h------ 385 (437)
++|+.||.|++||+++++.. ..+. +...+.+++++++ .+++++.++.|+|||++++. .+..+..+
T Consensus 577 ~sg~~Dg~i~iwd~~~~~~~----~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~ 648 (694)
T 3dm0_A 577 ASGGKDGVVLLWDLAEGKKL----YSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKS---IVEDLKVDLKAEAE 648 (694)
T ss_dssp EEEETTSBCEEEETTTTEEE----ECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTE---EEEEECCCCC----
T ss_pred EEEeCCCeEEEEECCCCceE----EEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCC---Chhhhccccccccc
Confidence 99999999999999887532 2222 3456888888766 44445556779999999865 44444322
Q ss_pred -------------CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 386 -------------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 386 -------------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
...+++++|+|++. +|++|+.||.|++|++.
T Consensus 649 ~~~~~~~~~~~~~~~~~~~l~~spdg~-----~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 649 KADNSGPAATKRKVIYCTSLNWSADGS-----TLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ------------CCCCEEEEEECTTSS-----EEEEEETTSEEEEEEC-
T ss_pred cccccccccCCceeEEeeeEEEcCCCC-----EEEEEcCCCeEEEEecc
Confidence 12478999999985 89999999999999985
No 40
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.2e-38 Score=285.85 Aligned_cols=292 Identities=14% Similarity=0.179 Sum_probs=234.0
Q ss_pred ceeeeec-CccCCeEEEEee--C-CEEEEEec---C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC----e-E
Q 013717 89 CINSVQL-GHKLPIGCIAVH--H-NFLYAASS---H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG----K-I 155 (437)
Q Consensus 89 ~~~~~~~-~h~~~V~~l~~~--~-~~l~s~~~---d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~-l 155 (437)
......+ +|...|.+++|+ + .++++|+. | .|++||+.+++......+ +|...|.+++|+++ . |
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~l 83 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI----EKAKPIKCGTFGATSLQQRYL 83 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE----EESSCEEEEECTTCCTTTCCE
T ss_pred HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee----cccCcEEEEEEcCCCCCCceE
Confidence 3444455 899999999999 5 45566665 7 999999998765555443 58999999999975 4 9
Q ss_pred EEEecCCeEEEEeCCCCc-ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe------CC--CeEE
Q 013717 156 FTAHQDCKIRVWQLTPTK-HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV------NN--GLIY 226 (437)
Q Consensus 156 ~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~--~~l~ 226 (437)
++++.||.|++||+.+++ ... .+.+|...|.++.+ ++ ++|+
T Consensus 84 ~~~~~dg~i~iwd~~~~~~~~~------------------------------~~~~~~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 84 ATGDFGGNLHIWNLEAPEMPVY------------------------------SVKGHKEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp EEEETTSCEEEECTTSCSSCSE------------------------------EECCCSSCEEEEEEESGGGCC-CCCEEE
T ss_pred EEecCCCeEEEEeCCCCCccEE------------------------------EEEecccceEEEeeccccccCCCccEEE
Confidence 999999999999998775 222 22369999999965 44 7999
Q ss_pred EEECCCcEEEEECCCcc-eEEEeecccc----cEEEEE----EecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717 227 SVSWDKSLKIWRASDLR-CLESIKAHED----AVNAVA----VSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH 296 (437)
Q Consensus 227 ~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (437)
+++.||.|++||+.+++ .+..+..+.+ .+.+++ |+|++. +++++.||.|++||++... . .....|
T Consensus 134 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~-~~~~~~ 208 (357)
T 3i2n_A 134 TGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA----L-RWETNI 208 (357)
T ss_dssp EEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE----E-EEEEEC
T ss_pred EEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc----e-eeecCC
Confidence 99999999999999887 6777765544 899998 678888 9999999999999987643 2 333567
Q ss_pred cccEEEEEEcc---CCCEEEEEeCCCcEEEEECCCCccceEEe-eeecccccceEEEEeeCC---EEEEEeCCCcEEEee
Q 013717 297 KSAVNALALSD---DGTVLFSGACDRSILVWDREDSANHMVVT-GALRGHGKAILCLINVAG---LLMSGSADRTVRIWQ 369 (437)
Q Consensus 297 ~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd 369 (437)
...|.+++|+| ++++|++++.||.|++||+++++....+. ....+|...|.++.++++ +|++++.||.|++||
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 88999999999 99999999999999999998765443321 234579999999999876 799999999999999
Q ss_pred CCCCCCe----------------eeeeeecCCCCCeeEEEEEccCCCCceEEEE-EecCCCcEEEEeeccCC
Q 013717 370 RGSDGRF----------------GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF-SGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 370 ~~~~~~~----------------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~ 424 (437)
++.+... .++..+.+|..+|++++|+|++. +|+ +++.||.|++|++....
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR-----GLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST-----TEEEEEETTSEEEEEEECC--
T ss_pred cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC-----eEEEEecCCCcEEEEECCCcc
Confidence 9865432 46788899999999999999986 355 89999999999998653
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-39 Score=298.08 Aligned_cols=321 Identities=15% Similarity=0.248 Sum_probs=237.5
Q ss_pred eeccccccccccCCCceeE----EecCCCcceeeeec--CccCCeEEEEee---CCEEEEEecC-eEEEEeCCC---Cc-
Q 013717 63 QTLPSVPSLQKLSPDETIN----FSSASHLCINSVQL--GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTG---TT- 128 (437)
Q Consensus 63 ~~~~~~~~~~s~s~dg~i~----~~~~~~~~~~~~~~--~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~---~~- 128 (437)
.+.|........+.++... .|+.+ ..++..+ +|.+.|++++|+ +++|++|+.| .|+|||+.+ +.
T Consensus 24 ~~~p~~~~~~~f~~~~~~~~~~~~w~~~--g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 24 KILPPLRDYKEFGPIQEIVRSPNMGNLR--GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp -CCCCGGGCGGGCCCCCCCCCCCGGGCC--CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC
T ss_pred CCCCChhchhhcCCcccccccccccccc--ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc
Confidence 3334444444444444322 46643 3444455 899999999998 5799999999 999999876 32
Q ss_pred eeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC---CCcccccccccCccccceeeecCCCCeeEEeec
Q 013717 129 WTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT---PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRH 203 (437)
Q Consensus 129 ~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (437)
.+....+ +|...|.+++|+++. |++++.||.|++||+. +++...... ... .
T Consensus 102 ~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~~-----------------i 157 (437)
T 3gre_A 102 YSSSLTY----DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN---CEC-----------------I 157 (437)
T ss_dssp CSCSEEE----ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE---EEE-----------------E
T ss_pred cceeeec----cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc---cce-----------------e
Confidence 1112222 489999999999754 9999999999999995 332211111 000 0
Q ss_pred cceeeec--CCCcEEEEEe--CC--CeEEEEECCCcEEEEECCCcceEEEeec--ccccEEEEEEecCCe-EEEEeCCCe
Q 013717 204 KKKLWIE--HGDAVTGLAV--NN--GLIYSVSWDKSLKIWRASDLRCLESIKA--HEDAVNAVAVSAGGT-VYTGSADRK 274 (437)
Q Consensus 204 ~~~~~~~--~~~~v~~~~~--~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~-l~~~~~dg~ 274 (437)
....+.. +...+.++.+ ++ .++++|+.||.|++||+++++.+..+.. |...|++++|+|++. |++|+.||.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~ 237 (437)
T 3gre_A 158 RKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI 237 (437)
T ss_dssp EEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC
T ss_pred EEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe
Confidence 0000111 6677888874 34 8999999999999999999999999987 889999999999998 999999999
Q ss_pred EEEecCCCCcccceeeEEee-CccccEEEEEEc----cCCCEEEEEeCCCcEEEEECCCCccceEEeee-----------
Q 013717 275 IRVWAKPFNEKRHALIATLE-KHKSAVNALALS----DDGTVLFSGACDRSILVWDREDSANHMVVTGA----------- 338 (437)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------- 338 (437)
|++||++.. ..+..+. .|...|.+++|+ |++.+|++|+.||.|++||+++++....+...
T Consensus 238 i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 313 (437)
T 3gre_A 238 IDIWDIRFN----VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP 313 (437)
T ss_dssp EEEEETTTT----EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred EEEEEcCCc----cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence 999998753 4566665 678899999655 56889999999999999999987654443311
Q ss_pred ---------ecc--cccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecC----------------------
Q 013717 339 ---------LRG--HGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEG---------------------- 384 (437)
Q Consensus 339 ---------~~~--~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------------- 384 (437)
+.+ |...|.++++++. +|++|+.||.|++||+.+++ +...+.+
T Consensus 314 ~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (437)
T 3gre_A 314 IEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELS---SSKAVISPSRFSDVFIPTQVTANLTMLLR 390 (437)
T ss_dssp BCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGG---GCEEEECC--CCCEEEEEEEETTEEEEEE
T ss_pred cccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcc---cceEEecccccCceEEEEEeecceEEEEE
Confidence 122 6777888888855 89999999999999999876 3333333
Q ss_pred ---------------CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 385 ---------------HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 385 ---------------h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
|.+.|++++|+++.+. .+|++|+.||.|+||+
T Consensus 391 ~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~---~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 391 KMKRTSTHSVDDSLYHHDIINSISTCEVDET---PLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC-------------CCCEEEEEEEESSSS---EEEEEEETTSCEEEEC
T ss_pred ecccccccccCcccccccceeeEeeeccCCc---eEEEEEcCCceEEEeC
Confidence 8999999999998322 5899999999999995
No 42
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.5e-38 Score=293.13 Aligned_cols=290 Identities=21% Similarity=0.344 Sum_probs=241.5
Q ss_pred EecCCCcceeeeec-CccCC-eEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEE
Q 013717 82 FSSASHLCINSVQL-GHKLP-IGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFT 157 (437)
Q Consensus 82 ~~~~~~~~~~~~~~-~h~~~-V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s 157 (437)
.|...........+ +|... +.|+.+++++|++|+.| .|++||+.++ +.+..+ .+|.+.|.+++|+++. +++
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~--~~~~~~---~~h~~~V~~l~~~~~~~l~s 178 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK--KFLLQL---SGHDGGVWALKYAHGGILVS 178 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTT--EEEEEE---CCCSSCEEEEEECSTTEEEE
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCC--cEEEEE---eCCCcCEEEEEEcCCCEEEE
Confidence 44444444556667 99887 57888889999999999 9999999985 445555 5799999999999765 999
Q ss_pred EecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCc
Q 013717 158 AHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKS 233 (437)
Q Consensus 158 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~ 233 (437)
|+.||+|++||+++++....+ .+|...|.++++.+ .++++|+.||.
T Consensus 179 ~s~dg~i~vwd~~~~~~~~~~------------------------------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGCCTHVF------------------------------EGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEE------------------------------CCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred EeCCCCEEEEECCCCcEEEEE------------------------------CCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence 999999999999987643322 36999999999973 78999999999
Q ss_pred EEEEECCCcce-----------------------EEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccccee
Q 013717 234 LKIWRASDLRC-----------------------LESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHAL 289 (437)
Q Consensus 234 i~iwd~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~ 289 (437)
|++||+.+++. +..+.+|...|.++ ++++. +++|+.||.|++||++.. +.
T Consensus 229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~----~~ 302 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM----KC 302 (464)
T ss_dssp EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT----EE
T ss_pred EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC----cE
Confidence 99999987653 44566788888887 45666 999999999999998754 46
Q ss_pred eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEee
Q 013717 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQ 369 (437)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd 369 (437)
+..+.+|...|.+++|+|++++|++|+.||.|++||+++++ ....+.+|...|.++.+++.+|++++.||.|++||
T Consensus 303 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd 378 (464)
T 3v7d_B 303 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 378 (464)
T ss_dssp EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEE
T ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEE
Confidence 77888899999999999999999999999999999998875 45556789999999999999999999999999999
Q ss_pred CCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717 370 RGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 370 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 426 (437)
+.+.. ..... .|...+..++|++++. +|++++ ||.|++||+++++..
T Consensus 379 ~~~~~---~~~~~-~~~~~~~~~~~~~~~~-----~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 379 ANDYS---RKFSY-HHTNLSAITTFYVSDN-----ILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp TTTCC---EEEEE-ECTTCCCEEEEEECSS-----EEEEEE-TTEEEEEETTTCCEE
T ss_pred CCCCc---eeeee-cCCCCccEEEEEeCCC-----EEEEec-CCeEEEEECCCCcEE
Confidence 99865 33333 3667788899999874 788887 899999999988754
No 43
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.6e-39 Score=295.22 Aligned_cols=286 Identities=19% Similarity=0.251 Sum_probs=232.9
Q ss_pred ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee--ee
Q 013717 59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT--SI 132 (437)
Q Consensus 59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~--~~ 132 (437)
..++.+.|....+++++.||+|++|+..... ....+ +|...|.+++|+ +++|++|+.| .|++||+.+.... ..
T Consensus 69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~ 147 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM 147 (380)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTTE-EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSS
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCc
Confidence 3678999999999999999999999987654 44555 999999999999 9999999999 9999999763211 11
Q ss_pred eccccCCCCcccEEEEEEeCC---eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717 133 NTFNDNDSSSGSVKSVTFCDG---KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209 (437)
Q Consensus 133 ~~~~~~~~h~~~v~~l~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (437)
.....+.+|.+.|.++.|.++ .|++|+.|++|++||+.+++....+... ...
T Consensus 148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~-------------------------~~~ 202 (380)
T 3iz6_a 148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE-------------------------FPS 202 (380)
T ss_dssp TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC-------------------------SSS
T ss_pred cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc-------------------------cCC
Confidence 112233689999999999864 3999999999999999988654332110 013
Q ss_pred cCCCcEEEEEeCC---CeEEEEECCCcEEEEECC-CcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc
Q 013717 210 EHGDAVTGLAVNN---GLIYSVSWDKSLKIWRAS-DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE 284 (437)
Q Consensus 210 ~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~ 284 (437)
+|...|.++++++ +++++|+.||.|++||++ ..+.+..+.+|...|++++|+|++. |++|+.||.|++||++.+.
T Consensus 203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence 5899999999965 899999999999999998 4577888889999999999999998 9999999999999987653
Q ss_pred ccceeeEEeeCc-------cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--E
Q 013717 285 KRHALIATLEKH-------KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--L 355 (437)
Q Consensus 285 ~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~ 355 (437)
.+..+..+ ...|.+++|+|+|++|++|+.||.|++||+..++....+.....+|...|.+++++++ +
T Consensus 283 ----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 283 ----QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA 358 (380)
T ss_dssp ----EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred ----EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE
Confidence 33333332 2348999999999999999999999999998876544443334689999999888755 9
Q ss_pred EEEEeCCCcEEEeeCCCCC
Q 013717 356 LMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 356 l~~~~~dg~i~iwd~~~~~ 374 (437)
|++|+.||+|+||++...+
T Consensus 359 l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 359 LCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEECTTSCEEEEECCSSS
T ss_pred EEEeeCCCCEEEEecCCCc
Confidence 9999999999999998643
No 44
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=292.12 Aligned_cols=313 Identities=18% Similarity=0.236 Sum_probs=242.6
Q ss_pred CCCceeEEecCCCcceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeecc--------ccCCCC
Q 013717 75 SPDETINFSSASHLCINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTF--------NDNDSS 141 (437)
Q Consensus 75 s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~--------~~~~~h 141 (437)
..++.+++|+.+.... ...+ +|.+.|.+++|+ +++|++|+.| .|++||+.++........ ....+|
T Consensus 20 ~~~~~~~v~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 20 RAESTRRVLGLELNKD-RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHHHTEEECTT-EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred eccCcceeeccccCcc-eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 4456677888765443 3444 999999999997 6999999999 999999998533222211 111359
Q ss_pred cccEEEEEEeC-Ce--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 142 SGSVKSVTFCD-GK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 142 ~~~v~~l~~~~-~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
...|.+++|++ +. |++++.||.|++||+.+++..... .+...+.++
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------------------~~~~~~~~~ 147 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-------------------------------NFEETVYSH 147 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE-------------------------------ECSSCEEEE
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec-------------------------------cCCCceeee
Confidence 99999999997 43 999999999999999987644333 267788999
Q ss_pred EeCC-----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCccccee--
Q 013717 219 AVNN-----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHAL-- 289 (437)
Q Consensus 219 ~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~-- 289 (437)
.+.+ .++++++.||.|++||+++++.+..+..|...|.+++|+|++. +++|+.||.|++||++........
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~ 227 (408)
T 4a11_B 148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227 (408)
T ss_dssp EECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC
T ss_pred EeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc
Confidence 9877 3899999999999999999999999999999999999999986 789999999999999765421111
Q ss_pred ----------eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc--ccceEEEEe-eCCEE
Q 013717 290 ----------IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH--GKAILCLIN-VAGLL 356 (437)
Q Consensus 290 ----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~-~~~~l 356 (437)
......|...|.+++|+|++++|++++.||.|++||+++++............ ......+.. ....+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF 307 (408)
T ss_dssp TTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred ccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence 11125688999999999999999999999999999999876543322211111 111122222 23477
Q ss_pred EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717 357 MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS 427 (437)
Q Consensus 357 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 427 (437)
++++.|+.|++||+.+++ ++..+.+|...|++++|+|++. +|++++.||.|++|+++.+++..
T Consensus 308 ~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~-----~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 308 VFVPYGSTIAVYTVYSGE---QITMLKGHYKTVDCCVFQSNFQ-----ELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEEEETTEEEEEETTTCC---EEEEECCCSSCEEEEEEETTTT-----EEEEEETTSCEEEEEECC-----
T ss_pred EEEecCCEEEEEECcCCc---ceeeeccCCCeEEEEEEcCCCC-----EEEEECCCCeEEEEeCCCCCccC
Confidence 778889999999999877 8889999999999999999884 89999999999999999887643
No 45
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.6e-39 Score=288.57 Aligned_cols=276 Identities=15% Similarity=0.104 Sum_probs=217.8
Q ss_pred ccceeeccccccccccCC------CceeEEecCCCcc---eeeeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCC
Q 013717 59 NLSLQTLPSVPSLQKLSP------DETINFSSASHLC---INSVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTG 126 (437)
Q Consensus 59 ~~~~~~~~~~~~~~s~s~------dg~i~~~~~~~~~---~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~ 126 (437)
..++.|.|+...+++.+. |+.+.+|+..... ...... +|...|.+++|+ ...+++++.| .|+|||+.+
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~ 124 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILE 124 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC----
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccc
Confidence 357899999999999987 7889999874432 222223 899999999999 5667778888 999999988
Q ss_pred CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecc
Q 013717 127 TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHK 204 (437)
Q Consensus 127 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (437)
++......+. ..+|...|.+++|+++. |++++.|++|++||+++++....+
T Consensus 125 ~~~~~~~~~~-~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~-------------------------- 177 (357)
T 4g56_B 125 KESLLVNKFA-KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY-------------------------- 177 (357)
T ss_dssp ----CCCCEE-ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE--------------------------
T ss_pred cceeEEEeec-cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE--------------------------
Confidence 6433332221 24799999999999765 999999999999999987644333
Q ss_pred ceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe--EEEEeCCCeEEE
Q 013717 205 KKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT--VYTGSADRKIRV 277 (437)
Q Consensus 205 ~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--l~~~~~dg~v~i 277 (437)
.+|...|++++|++ .++++++.||.|++||+++++....+. .+...+.+++|+|++. |++|+.|+.|++
T Consensus 178 ----~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~ 253 (357)
T 4g56_B 178 ----NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253 (357)
T ss_dssp ----CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred ----cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence 36999999999987 579999999999999999988776654 4677899999999764 889999999999
Q ss_pred ecCCCCcccceeeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC---
Q 013717 278 WAKPFNEKRHALIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--- 353 (437)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--- 353 (437)
||++... .+..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++. .. ..+|...|.+++|++
T Consensus 254 wd~~~~~----~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~----~~-~~~H~~~V~~vafsP~d~ 324 (357)
T 4g56_B 254 VNIKNPD----SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV----FR-DLSHRDFVTGVAWSPLDH 324 (357)
T ss_dssp EESSCGG----GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE----EE-ECCCSSCEEEEEECSSST
T ss_pred EECCCCc----EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE----eE-ECCCCCCEEEEEEeCCCC
Confidence 9987543 567788899999999999987 5799999999999999987642 22 347999999999874
Q ss_pred CEEEEEeCCCcEEEeeCCCCC
Q 013717 354 GLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 354 ~~l~~~~~dg~i~iwd~~~~~ 374 (437)
.+|++++.||+|++|++....
T Consensus 325 ~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 325 SKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TEEEEEETTSCEEEEECC---
T ss_pred CEEEEEcCCCeEEEEECCCCC
Confidence 499999999999999998654
No 46
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.7e-38 Score=282.85 Aligned_cols=273 Identities=20% Similarity=0.254 Sum_probs=228.1
Q ss_pred cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceee-e
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTS-I 132 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~-~ 132 (437)
...++.+.|....+++++.||+|++|+....... ..+ .|...|.+++|+ +.+|++|+.| .+++|++....... .
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~-~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~ 144 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA 144 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc-eEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence 3468899999999999999999999998765443 445 899999999999 9999999999 99999986531110 0
Q ss_pred eccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717 133 NTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE 210 (437)
Q Consensus 133 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (437)
.......+|...|.+++|+++. |++++.|++|++||+++++.... +.+
T Consensus 145 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~------------------------------~~~ 194 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS------------------------------FHG 194 (354)
T ss_dssp GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE------------------------------EEC
T ss_pred ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE------------------------------EcC
Confidence 1111124699999999999664 99999999999999998764332 246
Q ss_pred CCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc
Q 013717 211 HGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK 285 (437)
Q Consensus 211 ~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~ 285 (437)
|...|.++++.+ ++|++|+.||.|++||+++++++..+..|...|++++|+|++. |++|+.|+.|++||++...
T Consensus 195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~- 273 (354)
T 2pbi_B 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR- 273 (354)
T ss_dssp CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-
T ss_pred CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-
Confidence 999999999976 6899999999999999999999999999999999999999998 9999999999999987543
Q ss_pred cceeeEEeeC--ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeC
Q 013717 286 RHALIATLEK--HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSA 361 (437)
Q Consensus 286 ~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~ 361 (437)
.+..+.. +...+.+++|+|+|++|++|+.|+.|++||+.+++ ....+.+|...|.+++++++ +|++|+.
T Consensus 274 ---~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~----~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 274 ---EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS----RVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp ---EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS----EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred ---EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc----eEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 2333332 33578999999999999999999999999998776 33456789999999998765 9999999
Q ss_pred CCcEEEee
Q 013717 362 DRTVRIWQ 369 (437)
Q Consensus 362 dg~i~iwd 369 (437)
||+|+||+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999996
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.6e-37 Score=287.01 Aligned_cols=326 Identities=21% Similarity=0.271 Sum_probs=256.3
Q ss_pred eccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccCCC
Q 013717 64 TLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS 140 (437)
Q Consensus 64 ~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~ 140 (437)
+.++...+++++.||.|++|+.... .+...+ +|.+.|.+++|+ +.+|++|+.| .|++||+.++ +....+ .+
T Consensus 128 ~~~~~~~l~sgs~dg~i~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~---~~ 201 (464)
T 3v7d_B 128 LQFEDNYVITGADDKMIRVYDSINK-KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG--CCTHVF---EG 201 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT--EEEEEE---CC
T ss_pred EEECCCEEEEEcCCCcEEEEECCCC-cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC--cEEEEE---CC
Confidence 3445678999999999999998764 455566 999999999999 6699999999 9999999985 344444 57
Q ss_pred CcccEEEEEEe--CC-e-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 141 SSGSVKSVTFC--DG-K-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 141 h~~~v~~l~~~--~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
|...|.+++|. ++ . +++++.||+|++||+.+............. ......+... ......+.+|...|.
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~~~v~ 274 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY---PLVFHTPEEN----PYFVGVLRGHMASVR 274 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS---SEEESCGGGC----TTEEEEECCCSSCEE
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc---ceEeeccCCC----eEEEEEccCccceEE
Confidence 99999999998 33 3 999999999999999877543322111100 0000000000 001234567999999
Q ss_pred EEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717 217 GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK 295 (437)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 295 (437)
++..+++++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++. +++|+.||.|++||++.. +.+..+.+
T Consensus 275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~ 350 (464)
T 3v7d_B 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG----ELMYTLQG 350 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT----EEEEEECC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEEeC
Confidence 9988889999999999999999999999999999999999999999998 999999999999998754 47788889
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCC
Q 013717 296 HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGR 375 (437)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 375 (437)
|...|.+++|+ +++|++++.||.|++||+++....... ...+...+.++..++.++++|+ ||.|++||+++++
T Consensus 351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~- 423 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY---HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK- 423 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE---ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC-
T ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee---cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc-
Confidence 99999999997 579999999999999999876543322 2334555677777888999988 8999999999877
Q ss_pred eeeeee-ecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 376 FGCLAV-LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 376 ~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
++.. +.+|...|.+++|++. .++++++.||.+.+|-++
T Consensus 424 --~~~~~~~~~~~~v~~v~~~~~------~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 424 --LVHANILKDADQIWSVNFKGK------TLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp --EEESCTTTTCSEEEEEEEETT------EEEEEEEETTEEEEEEEE
T ss_pred --EEehhhccCCCcEEEEEecCC------EEEEEEEeCCeEEEEEee
Confidence 5554 6788999999999743 377788888877776554
No 48
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.1e-38 Score=286.87 Aligned_cols=289 Identities=15% Similarity=0.273 Sum_probs=229.4
Q ss_pred CccCCeEEEEeeC------CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC------eEEEEecCC
Q 013717 96 GHKLPIGCIAVHH------NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG------KIFTAHQDC 162 (437)
Q Consensus 96 ~h~~~V~~l~~~~------~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------~l~s~~~dg 162 (437)
+|.++|.+++|+. ..+++++.+ .|++||+.++.............|...|.+++|+++ .|++++.||
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 8999999999982 345555545 999999997533222211111347789999999966 399999999
Q ss_pred eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEEC
Q 013717 163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRA 239 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~ 239 (437)
.|++||+.+++....+ .+|...|.+++|+| .+|++++.||.|++||+
T Consensus 96 ~i~v~d~~~~~~~~~~------------------------------~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 96 IIRIINPITMQCIKHY------------------------------VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp EEEEECTTTCCEEEEE------------------------------ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EEEEEEchhceEeeee------------------------------cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 9999999877543322 36999999999986 79999999999999999
Q ss_pred CCcceEEEe---ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc------------------------eeeE
Q 013717 240 SDLRCLESI---KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH------------------------ALIA 291 (437)
Q Consensus 240 ~~~~~~~~~---~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~------------------------~~~~ 291 (437)
++++.+..+ ..|...|.+++|+|++. |++++.||.|++||++...... ....
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp TTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred ecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 999998888 67999999999999998 9999999999999987543211 1122
Q ss_pred EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc----------ceEEeeeecccccceEEEEee----CCEEE
Q 013717 292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN----------HMVVTGALRGHGKAILCLINV----AGLLM 357 (437)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~~~i~~~~~~----~~~l~ 357 (437)
....|...|.+++|+ +++|++++.||.|++||+++... .......+.+|...+.++.++ +.+|+
T Consensus 226 ~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 226 TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 334488999999998 77999999999999999987543 123455566777777666554 66999
Q ss_pred EEeCCCcEEEeeCCCCCCee-eeeeecCC--CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 358 SGSADRTVRIWQRGSDGRFG-CLAVLEGH--TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 358 ~~~~dg~i~iwd~~~~~~~~-~~~~~~~h--~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
+|+.||.|++||+.+++... ....+.+| ...|++++|+|++. +|++++.||.|++||+.
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-----ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS-----EEEEEETTSEEEEEEC-
T ss_pred EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC-----eEEEEeCCCEEEEEEec
Confidence 99999999999999876322 45577777 79999999999874 89999999999999986
No 49
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=311.46 Aligned_cols=331 Identities=10% Similarity=0.082 Sum_probs=252.4
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFND 137 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~ 137 (437)
.++.|.|....+++++.||+|++|+... ..+...+.|...|.+++|+ +++|++++.| .|++||+.+++ .+..+
T Consensus 21 ~~lafspdg~~lAsgs~Dg~I~lw~~~~-~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~--~~~~~-- 95 (902)
T 2oaj_A 21 IAAAFDFTQNLLAIATVTGEVHIYGQQQ-VEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK--VLTTV-- 95 (902)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEECSTT-CEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCS--EEEEE--
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCC-cEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc--EEEEE--
Confidence 5789999999999999999999999865 3444445889999999999 8899999999 99999999853 34444
Q ss_pred CCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc-eeeecCCCc
Q 013717 138 NDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK-KLWIEHGDA 214 (437)
Q Consensus 138 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 214 (437)
.|...|++++|+++. |++|+.||+|++||+++++.... . .+.. ... ..+.+|...
T Consensus 96 --~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~-~-i~~~------------------~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 96 --FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF-K-LDNL------------------QKSSFFPAARLSP 153 (902)
T ss_dssp --ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE-E-ECCH------------------HHHHTCSSSCCCC
T ss_pred --cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc-e-eccc------------------cccccccccCCCC
Confidence 266899999999765 99999999999999987753210 0 0000 000 112468999
Q ss_pred EEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecc------------------cccEEEEEEecCCe-EEEEeCC
Q 013717 215 VTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAH------------------EDAVNAVAVSAGGT-VYTGSAD 272 (437)
Q Consensus 215 v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~-l~~~~~d 272 (437)
|.+++|+| ..+++|+.||.| +||+++++.+..+..| ...|++++|+|+|. |++|+.|
T Consensus 154 V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D 232 (902)
T 2oaj_A 154 IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED 232 (902)
T ss_dssp CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC
Confidence 99999998 589999999999 9999999988888655 46799999999998 9999999
Q ss_pred CeEEEecCCCCccc------------------------c-----------------ee--------------eEEee---
Q 013717 273 RKIRVWAKPFNEKR------------------------H-----------------AL--------------IATLE--- 294 (437)
Q Consensus 273 g~v~iwd~~~~~~~------------------------~-----------------~~--------------~~~~~--- 294 (437)
|.|++||++.+... . .. +..+.
T Consensus 233 g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~ 312 (902)
T 2oaj_A 233 NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGY 312 (902)
T ss_dssp CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEE
T ss_pred CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCC
Confidence 99999998542210 0 00 00000
Q ss_pred ---------------------------Cc---------------------------------------------------
Q 013717 295 ---------------------------KH--------------------------------------------------- 296 (437)
Q Consensus 295 ---------------------------~~--------------------------------------------------- 296 (437)
.+
T Consensus 313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~ 392 (902)
T 2oaj_A 313 TPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASL 392 (902)
T ss_dssp CCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGG
T ss_pred CCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccccc
Confidence 00
Q ss_pred --------cccEEEE----------------------------------EEccCCCEEEEEeCCCcEEEEECCCCccc--
Q 013717 297 --------KSAVNAL----------------------------------ALSDDGTVLFSGACDRSILVWDREDSANH-- 332 (437)
Q Consensus 297 --------~~~i~~~----------------------------------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-- 332 (437)
...|+++ +|+|++++|++|+.|++|++||+.++...
T Consensus 393 ~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~ 472 (902)
T 2oaj_A 393 FPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN 472 (902)
T ss_dssp SCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT
T ss_pred CCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC
Confidence 0112222 23577888999999999999998876421
Q ss_pred eEEeeeec-----ccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC------------------------------
Q 013717 333 MVVTGALR-----GHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR------------------------------ 375 (437)
Q Consensus 333 ~~~~~~~~-----~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~------------------------------ 375 (437)
..+...+. +|...|.+++|+++ +||+|+.||+|+|||+.+++.
T Consensus 473 ~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (902)
T 2oaj_A 473 ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVD 552 (902)
T ss_dssp BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEE
T ss_pred ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccc
Confidence 11111122 78889999998865 999999999999999976531
Q ss_pred ------------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 376 ------------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 376 ------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
+.++..+.+|.+.|++|+|+|++ +|++|+.||+|++||++.+.
T Consensus 553 ~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG------~lAsgs~D~tv~lwd~~~~~ 607 (902)
T 2oaj_A 553 VRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG------FVGIAYAAGSLMLIDRRGPA 607 (902)
T ss_dssp CGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS------EEEEEETTSEEEEEETTTTE
T ss_pred ccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc------EEEEEeCCCcEEEEECCCCe
Confidence 23578889999999999999998 79999999999999987653
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-39 Score=303.72 Aligned_cols=318 Identities=9% Similarity=0.051 Sum_probs=219.1
Q ss_pred cccccccccCCCceeEEecCCCccee---eeec-CccCCeEEEEeeC--------CEEEEEecC-eEEEEeCCCCcee--
Q 013717 66 PSVPSLQKLSPDETINFSSASHLCIN---SVQL-GHKLPIGCIAVHH--------NFLYAASSH-EINVYDRTGTTWT-- 130 (437)
Q Consensus 66 ~~~~~~~s~s~dg~i~~~~~~~~~~~---~~~~-~h~~~V~~l~~~~--------~~l~s~~~d-~v~vwd~~~~~~~-- 130 (437)
|....+++.+.|++|++|+.+..... ...+ +|.+.|.+++|+. ++||+++.| +|+|||+..+...
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 44456788899999999998654321 2445 7889999999982 599999999 9999999875321
Q ss_pred ----eeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717 131 ----SINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK 205 (437)
Q Consensus 131 ----~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (437)
.......+.+|...|.+++|+++. |++|+.||+|++||++++....
T Consensus 251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~----------------------------- 301 (524)
T 2j04_B 251 VFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPS----------------------------- 301 (524)
T ss_dssp EEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCS-----------------------------
T ss_pred cceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCce-----------------------------
Confidence 001111236799999999998654 9999999999999998653211
Q ss_pred eeeecCCCcEEEE--EeCC---CeEEEEECCCcEEEEECCCcceEEEeecccc--cEEEEEEecCCe-EEEEeCCCeEEE
Q 013717 206 KLWIEHGDAVTGL--AVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHED--AVNAVAVSAGGT-VYTGSADRKIRV 277 (437)
Q Consensus 206 ~~~~~~~~~v~~~--~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~-l~~~~~dg~v~i 277 (437)
..+.+|...|.++ .+++ .+|++|+.|++|+|||+++++++..+.+|.. .|.+++|+|++. +++++.|+.|++
T Consensus 302 ~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l 381 (524)
T 2j04_B 302 FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA 381 (524)
T ss_dssp EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEE
T ss_pred EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEE
Confidence 1234699999999 4565 4789999999999999999887777766653 588999999987 999999999999
Q ss_pred ecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee-cccccceEEEEeeCC-E
Q 013717 278 WAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL-RGHGKAILCLINVAG-L 355 (437)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~ 355 (437)
||++... .+..+.+|.+.|++++|+|+|++|++|+.||+|++||+.... ........ ..+...+..++++++ -
T Consensus 382 wd~~~~~----~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~ 456 (524)
T 2j04_B 382 VPSRAAF----AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDYSIKDD 456 (524)
T ss_dssp EETTCTT----CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST-TTCC------CCCCEEEECBCCSSSC
T ss_pred EECcccc----cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh-ccccccCccceeeeEEEEeccCCCCC
Confidence 9987643 445677899999999999999999999999999999986431 11000000 001224556666654 1
Q ss_pred EEEEeCCCcEEEeeCC-CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 356 LMSGSADRTVRIWQRG-SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 356 l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
++.... .+++|+.. ++ .++..+.+|...|.+++|+|++. .+.++++|+.||.||||++....
T Consensus 457 ~~~~~~--~~~~~~~~~~g---~~~~~l~gh~~~V~~Vafsp~~~--~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 457 KYRIDS--SYEVYPLTVND---VSKAKIDAHGINITCTKWNETSA--GGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp EEEECC--CCCCCC----------------CCCSCCCEEECCSTT--TTTEEEEECTTSEEEEEECSCC-
T ss_pred eEEccC--CceecccccCC---cceeeecCCCceEEEEECCCCCC--ccHHHHhhccCceEEEEEccccc
Confidence 222222 23344332 22 36788999999999999999963 11389999999999999998653
No 51
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.5e-38 Score=277.85 Aligned_cols=271 Identities=21% Similarity=0.265 Sum_probs=221.9
Q ss_pred cceeecccc-ccccccCCCceeEEecCCCc----ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee
Q 013717 60 LSLQTLPSV-PSLQKLSPDETINFSSASHL----CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT 130 (437)
Q Consensus 60 ~~~~~~~~~-~~~~s~s~dg~i~~~~~~~~----~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~ 130 (437)
.++.+.|.. ..+++++.|++|++|+.... ..++..+ +|...|.+++|+ +++|++|+.| +|++||+.++ +
T Consensus 21 ~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~--~ 98 (319)
T 3frx_A 21 TSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG--E 98 (319)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--E
T ss_pred EEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC--C
Confidence 467788855 68999999999999998532 3456677 999999999999 8999999999 9999999985 3
Q ss_pred eeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717 131 SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW 208 (437)
Q Consensus 131 ~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (437)
....+ .+|...|.+++|+++. |++++.|++|++||++.... ..+
T Consensus 99 ~~~~~---~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~-------------------------------~~~ 144 (319)
T 3frx_A 99 TYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL-------------------------------ATL 144 (319)
T ss_dssp EEEEE---ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEE-------------------------------EEE
T ss_pred eeEEE---ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE-------------------------------EEE
Confidence 44444 5799999999999765 99999999999999874321 122
Q ss_pred ecCCCcEEEEEeCC--------CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEec
Q 013717 209 IEHGDAVTGLAVNN--------GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWA 279 (437)
Q Consensus 209 ~~~~~~v~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd 279 (437)
.+|...|.++.+.| ..+++++.|+.|++||+++++....+.+|...|.+++|+|++. |++|+.||.|++||
T Consensus 145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd 224 (319)
T 3frx_A 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224 (319)
T ss_dssp CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 36899999999987 2799999999999999999999999999999999999999998 99999999999999
Q ss_pred CCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee----cccccceEEEEeeCC-
Q 013717 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL----RGHGKAILCLINVAG- 354 (437)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~- 354 (437)
+.... .+..+.. ...|.+++|+|++.+|++++.+ .+++|++........+...+ ..|...+.+++|+++
T Consensus 225 ~~~~~----~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 298 (319)
T 3frx_A 225 LAAKK----AMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298 (319)
T ss_dssp TTTTE----EEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred CCCCc----EEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence 87543 4555553 5689999999999999988765 49999997654332222211 234566778887755
Q ss_pred -EEEEEeCCCcEEEeeCCC
Q 013717 355 -LLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 355 -~l~~~~~dg~i~iwd~~~ 372 (437)
+|++|+.||.|+|||+.+
T Consensus 299 ~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 299 QTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp SEEEEEETTSCEEEEEEEE
T ss_pred CEEEEeecCceEEEEEEee
Confidence 999999999999999875
No 52
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.7e-39 Score=299.79 Aligned_cols=288 Identities=14% Similarity=0.156 Sum_probs=216.1
Q ss_pred CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC-C--eEEEEecCCeEEEEe
Q 013717 96 GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD-G--KIFTAHQDCKIRVWQ 168 (437)
Q Consensus 96 ~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~--~l~s~~~dg~i~iwd 168 (437)
+|...|+||+|+ +++||+|+.| .|+|||+.++.......+ .+|.+.|++|+|+| + .|++|+.||+|++||
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~---~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG---IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC---CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc---cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 899999999998 6799999999 999999988654444444 68999999999985 2 399999999999999
Q ss_pred CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEE
Q 013717 169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLE 246 (437)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~ 246 (437)
++++........ ..+...+.+++|++ .+|++|+.||.|++||++. +.+.
T Consensus 194 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~ 244 (435)
T 4e54_B 194 FKGNILRVFASS----------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELW 244 (435)
T ss_dssp TTSCEEEEEECC----------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCC
T ss_pred ccCCceeEEecc----------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeE
Confidence 986532211110 12445677888887 8999999999999999864 5677
Q ss_pred EeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 013717 247 SIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVW 324 (437)
Q Consensus 247 ~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (437)
.+.+|...|++++|+|++. +++|+.|+.|++||++....... +....+|...|++++|+|+|++|++++.||.|++|
T Consensus 245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iw 323 (435)
T 4e54_B 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS-FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323 (435)
T ss_dssp CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC-CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce-EEEeeeccccccceeECCCCCeeEEEcCCCEEEEE
Confidence 7889999999999999886 78999999999999976543322 23345689999999999999999999999999999
Q ss_pred ECCCCccceEEeeeeccccc--ceEEEEe--eCCEEEEEe------------CCCcEEEeeCCCCCCeeeeeee-cCCCC
Q 013717 325 DREDSANHMVVTGALRGHGK--AILCLIN--VAGLLMSGS------------ADRTVRIWQRGSDGRFGCLAVL-EGHTK 387 (437)
Q Consensus 325 d~~~~~~~~~~~~~~~~~~~--~i~~~~~--~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~-~~h~~ 387 (437)
|++++.....+......+.. .+....+ .+.+++++. .++.|++||..+++ .+..+ .+|..
T Consensus 324 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~---~~~~l~~~~~~ 400 (435)
T 4e54_B 324 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK---MMCQLYDPESS 400 (435)
T ss_dssp ESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC---EEEEECCSSCC
T ss_pred ECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc---EEEEEeCCCCC
Confidence 99987655444322111111 1111122 223444432 34679999999877 55554 56888
Q ss_pred CeeEE-EEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 388 PVKSL-TAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 388 ~v~~l-~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.|.++ +|+|++. +|++|+ |+.|+||+++.+++
T Consensus 401 ~v~s~~~fspdg~-----~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 401 GISSLNEFNPMGD-----TLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CCCCEEEECTTSS-----CEEEEC-SSEEEECCCC----
T ss_pred cEEEEEEECCCCC-----EEEEEc-CCcEEEEECCcCee
Confidence 89988 6999884 677765 88999999998865
No 53
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=275.12 Aligned_cols=279 Identities=19% Similarity=0.295 Sum_probs=228.4
Q ss_pred eEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCccccc
Q 013717 101 IGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKL 177 (437)
Q Consensus 101 V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~ 177 (437)
.++|+|+ +++||+|.+++|+|||+++++......+ .+|...|.+++|+++. |++|+.||+|++||+++++....
T Consensus 28 ~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~---~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM---EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC---CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEe---cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 4789999 7788877644999999999755444443 5789999999999765 99999999999999998865433
Q ss_pred ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc-ceEEEeecccccEE
Q 013717 178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-RCLESIKAHEDAVN 256 (437)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~ 256 (437)
. .+|...+.++.+.+..+++++.++.+++|+.... ..+..+.+|...+.
T Consensus 105 ~------------------------------~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 105 M------------------------------TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 154 (318)
T ss_dssp E------------------------------ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred e------------------------------cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceE
Confidence 2 3688999999999999999999999999998876 45567778999999
Q ss_pred EEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE---EEEeCCCcEEEEECCCCccc
Q 013717 257 AVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL---FSGACDRSILVWDREDSANH 332 (437)
Q Consensus 257 ~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~ 332 (437)
.+.+.+++. +++++.||.|++||++..............+...|.+++++|++..+ ++++.++.|++||.+.....
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 999999998 99999999999999987666555666777788999999999976533 46678899999999876532
Q ss_pred eEEeeeecccccceEEEEeeC--CEEEE--EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEE
Q 013717 333 MVVTGALRGHGKAILCLINVA--GLLMS--GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFS 408 (437)
Q Consensus 333 ~~~~~~~~~~~~~i~~~~~~~--~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s 408 (437)
.. ..+...+..+.+.+ ..+++ |+.|+.|++||+.+++ ++..+.+|.+.|++++|+|++. +|+|
T Consensus 235 ~~-----~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~---~~~~l~gH~~~V~~l~~spdg~-----~l~S 301 (318)
T 4ggc_A 235 SA-----VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGA-----TVAS 301 (318)
T ss_dssp EE-----EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSS-----CEEE
T ss_pred cc-----ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCC-----EEEE
Confidence 22 22455566666554 45554 4479999999999877 8899999999999999999885 7999
Q ss_pred ecCCCcEEEEeeccCCC
Q 013717 409 GSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 409 ~~~dg~i~iw~~~~~~~ 425 (437)
||.||+|+|||+....|
T Consensus 302 ~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 302 AAADETLRLWRCFELDP 318 (318)
T ss_dssp EETTTEEEEECCSCCCC
T ss_pred EecCCeEEEEECCCCCC
Confidence 99999999999987654
No 54
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.3e-38 Score=282.87 Aligned_cols=295 Identities=13% Similarity=0.078 Sum_probs=221.5
Q ss_pred cCCeEEEEee--CCEEEEEecC--------eEEEEeCCCCceeeeec-----cccCCCCcccEEEEEEeCCeEEEEe---
Q 013717 98 KLPIGCIAVH--HNFLYAASSH--------EINVYDRTGTTWTSINT-----FNDNDSSSGSVKSVTFCDGKIFTAH--- 159 (437)
Q Consensus 98 ~~~V~~l~~~--~~~l~s~~~d--------~v~vwd~~~~~~~~~~~-----~~~~~~h~~~v~~l~~~~~~l~s~~--- 159 (437)
.-||+|++|+ +++|++|+.+ .|++|++..+....... ...+.+|...|.+++++++.+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 3589999999 8899998764 49999987642211110 0123578889999999888766654
Q ss_pred --------cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-
Q 013717 160 --------QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV- 228 (437)
Q Consensus 160 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~- 228 (437)
.|+.+++|++........... .........+...+.+++|+| ++++++
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~v~fSpDg~~la~as 152 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLT---------------------SVDFDASTNADDYTKLVYISREGTVAAIAS 152 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEE---------------------EECSSCCCCTTCCEEEEEECTTSSCEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEee---------------------eeceeecCCcccCEEEEEEcCCCCEEEEEE
Confidence 577889998765432111100 000011123566789999999 666544
Q ss_pred -ECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEc
Q 013717 229 -SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS 306 (437)
Q Consensus 229 -~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (437)
+.|++|+|||+++++++..+. |...|.+++|+|+|+ +++++.+ .+++|+...+.. ........|...|.+++|+
T Consensus 153 ~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~fs 228 (365)
T 4h5i_A 153 SKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC--IARKTDFDKNWSLSKINFI 228 (365)
T ss_dssp SCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE--EEEECCCCTTEEEEEEEEE
T ss_pred CCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcc--eeeeecCCCCCCEEEEEEc
Confidence 478999999999999998886 778899999999999 7777655 455555443321 2223445688899999999
Q ss_pred cCCCEEEEEeCCC----cEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeee
Q 013717 307 DDGTVLFSGACDR----SILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLA 380 (437)
Q Consensus 307 ~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~ 380 (437)
|+++++++++.|+ .+++|++............+.+|...|.+++++++ +||+|+.|+.|+|||+++++ ++.
T Consensus 229 pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~---~~~ 305 (365)
T 4h5i_A 229 ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS---MSK 305 (365)
T ss_dssp ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE---EEE
T ss_pred CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc---EEE
Confidence 9999999999887 68889987765555555667889999999988765 99999999999999999866 666
Q ss_pred e-ecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 381 V-LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 381 ~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
. +.+|..+|++|+|+|++. +|+|||.|++||||++.....
T Consensus 306 ~~~~gH~~~V~~v~fSpdg~-----~laS~S~D~tvrvw~ip~~~~ 346 (365)
T 4h5i_A 306 IFKQAHSFAITEVTISPDST-----YVASVSAANTIHIIKLPLNYA 346 (365)
T ss_dssp EETTSSSSCEEEEEECTTSC-----EEEEEETTSEEEEEECCTTTT
T ss_pred EecCcccCCEEEEEECCCCC-----EEEEEeCCCeEEEEEcCCCCc
Confidence 5 589999999999999984 899999999999999976543
No 55
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.3e-39 Score=292.09 Aligned_cols=292 Identities=15% Similarity=0.183 Sum_probs=222.0
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT 170 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~ 170 (437)
.|.++|.+++|+ +++|++|+.| .|++||+.++..+....+ .+|...|.+++|+++. |++++.|++|++||+.
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF---SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB---CCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE---ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 466799999999 8999999999 999999998644555555 6799999999999764 9999999999999998
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc---eE
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR---CL 245 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~---~~ 245 (437)
+++..... ..+.+|...|.+++|++ ++|++++.|+.|++||+++++ ..
T Consensus 86 ~~~~~~~~---------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 86 PDGTWKQT---------------------------LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS 138 (377)
T ss_dssp ---CCCCE---------------------------EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred CCCceeee---------------------------eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee
Confidence 77511111 11235899999999998 899999999999999999887 46
Q ss_pred EEeec-ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc--------------ccceeeEEeeCccccEEEEEEccCC
Q 013717 246 ESIKA-HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE--------------KRHALIATLEKHKSAVNALALSDDG 309 (437)
Q Consensus 246 ~~~~~-~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (437)
..+.. |...|.+++|+|++. |++++.||.|++||+.... .....+..+ .|...|.+++|+|++
T Consensus 139 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 139 KHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG 217 (377)
T ss_dssp EEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS
T ss_pred eEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC
Confidence 77776 999999999999998 9999999999999985322 123455566 899999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCC-C-----------
Q 013717 310 TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDG-R----------- 375 (437)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~-~----------- 375 (437)
++|++++.||.|++||+++++........+.+|...|.++.|+++ +|++|+.++.+ +|+..... .
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 296 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSK 296 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccc
Confidence 999999999999999999887655556667889999999888755 77777766655 66654211 0
Q ss_pred ---------------e---------eee-------------eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717 376 ---------------F---------GCL-------------AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418 (437)
Q Consensus 376 ---------------~---------~~~-------------~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw 418 (437)
. ... .....|.+.|+++++.+..+. ....|+|||.||.|++|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~-~~~~~~s~g~Dg~i~iW 375 (377)
T 3dwl_C 297 TSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG-NITAFTSSGTDGRVVLW 375 (377)
T ss_dssp CCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT-EEEEEEEEETTSEEEEE
T ss_pred cccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC-ceEEEEeecCCCcEEEe
Confidence 0 000 011239999999998775432 12369999999999999
Q ss_pred ee
Q 013717 419 QV 420 (437)
Q Consensus 419 ~~ 420 (437)
|+
T Consensus 376 dl 377 (377)
T 3dwl_C 376 TL 377 (377)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 56
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=288.17 Aligned_cols=298 Identities=14% Similarity=0.178 Sum_probs=237.5
Q ss_pred eEEecCCCcceeeeecCccCCeEEEEee--CC-EEEEEecC-eEEEEeC----CCCce----eeeeccc-cCC------C
Q 013717 80 INFSSASHLCINSVQLGHKLPIGCIAVH--HN-FLYAASSH-EINVYDR----TGTTW----TSINTFN-DND------S 140 (437)
Q Consensus 80 i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~-~l~s~~~d-~v~vwd~----~~~~~----~~~~~~~-~~~------~ 140 (437)
+.+|+.+..........|.+.|.+++|+ ++ +||+|+.| .|++||+ .+++. .....+. ... +
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (425)
T 1r5m_A 27 DSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGK 106 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-----
T ss_pred cccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccC
Confidence 3456665555554444788999999999 77 99999999 9999999 77541 0111111 111 2
Q ss_pred CcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 141 SSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 141 h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
|...|.+++|+++. |++++.||.|++||. +++.... +..|...|.++
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~~~~------------------------------~~~~~~~v~~~ 155 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNV------------------------------LNFHRAPIVSV 155 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEE------------------------------ECCCCSCEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCeeee------------------------------ccCCCccEEEE
Confidence 68899999999765 999999999999993 3332221 23589999999
Q ss_pred EeCC--CeEEEEECCCcEEEEECCCcceEEEeeccccc---------------EEEEEEecCCeEEEEeCCCeEEEecCC
Q 013717 219 AVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDA---------------VNAVAVSAGGTVYTGSADRKIRVWAKP 281 (437)
Q Consensus 219 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~l~~~~~dg~v~iwd~~ 281 (437)
+|++ ++|++++.||.|++||+.+++.+..+..+... +.+++|+|++.+++++.+|.|++||+.
T Consensus 156 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 235 (425)
T 1r5m_A 156 KWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT 235 (425)
T ss_dssp EECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETT
T ss_pred EECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcC
Confidence 9998 88999999999999999999999888877666 999999999999999999999999987
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEe
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGS 360 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~ 360 (437)
... .+..+..|...|.+++|+|++++|++++.||.|++||+++++.. ..+.+|...+.++.++++ ++++++
T Consensus 236 ~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~l~~~~ 307 (425)
T 1r5m_A 236 EKT----PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ----NCFYGHSQSIVSASWVGDDKVISCS 307 (425)
T ss_dssp CSS----CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS----EEECCCSSCEEEEEEETTTEEEEEE
T ss_pred CCc----eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc----eEecCCCccEEEEEECCCCEEEEEe
Confidence 543 55667789999999999999999999999999999999876643 334668889999999876 999999
Q ss_pred CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 361 ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 361 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
.||.|++||+.+++ .+..+..|...|.+++|+|++. +|++++.||.|++|++..+.
T Consensus 308 ~d~~i~i~d~~~~~---~~~~~~~~~~~i~~~~~s~~~~-----~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 308 MDGSVRLWSLKQNT---LLALSIVDGVPIFAGRISQDGQ-----KYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TTSEEEEEETTTTE---EEEEEECTTCCEEEEEECTTSS-----EEEEEETTSCEEEEECHHHH
T ss_pred CCCcEEEEECCCCc---EeEecccCCccEEEEEEcCCCC-----EEEEEECCCeEEEEECCCCc
Confidence 99999999998765 7888889999999999999874 89999999999999998765
No 57
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.8e-37 Score=281.53 Aligned_cols=272 Identities=21% Similarity=0.351 Sum_probs=223.0
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeecCcc------------------CCeEEEEee--CCEEEEEecC-e
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHK------------------LPIGCIAVH--HNFLYAASSH-E 118 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~------------------~~V~~l~~~--~~~l~s~~~d-~ 118 (437)
..+.|.|....+++++ ++.+.+|+...........+|. ..|.+++|+ +++|++|+.| .
T Consensus 68 ~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~ 146 (393)
T 1erj_A 68 CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 146 (393)
T ss_dssp CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe
Confidence 5789999999998865 7899999987644333222443 249999999 8999999999 9
Q ss_pred EEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCC
Q 013717 119 INVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS 196 (437)
Q Consensus 119 v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (437)
|++||+.++ +....+ .+|...|.+++|+++. |++++.|++|++||+++++....+
T Consensus 147 i~iwd~~~~--~~~~~~---~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~------------------ 203 (393)
T 1erj_A 147 IRIWDIENR--KIVMIL---QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL------------------ 203 (393)
T ss_dssp EEEEETTTT--EEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE------------------
T ss_pred EEEEECCCC--cEEEEE---ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE------------------
Confidence 999999985 344444 5799999999999765 999999999999999987643322
Q ss_pred eeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEe-------ecccccEEEEEEecCCe-
Q 013717 197 YVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESI-------KAHEDAVNAVAVSAGGT- 265 (437)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~- 265 (437)
.+...+.++++++ .++++|+.||.|++||+++++.+..+ .+|...|.+++|+|++.
T Consensus 204 -------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~ 270 (393)
T 1erj_A 204 -------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 270 (393)
T ss_dssp -------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred -------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE
Confidence 2667899999986 79999999999999999999888776 46889999999999998
Q ss_pred EEEEeCCCeEEEecCCCCcc--------cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee
Q 013717 266 VYTGSADRKIRVWAKPFNEK--------RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG 337 (437)
Q Consensus 266 l~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (437)
|++|+.||.|++||++.... .......+.+|...|.+++|+|++++|++|+.|+.|++||+++++ ...
T Consensus 271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~----~~~ 346 (393)
T 1erj_A 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN----PLL 346 (393)
T ss_dssp EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC----EEE
T ss_pred EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe----EEE
Confidence 99999999999999875321 123456678899999999999999999999999999999998876 344
Q ss_pred eecccccceEEEEeeC--------CEEEEEeCCCcEEEeeCCC
Q 013717 338 ALRGHGKAILCLINVA--------GLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 338 ~~~~~~~~i~~~~~~~--------~~l~~~~~dg~i~iwd~~~ 372 (437)
.+.+|...|.++++.+ ++|++|+.||+|+||++..
T Consensus 347 ~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 347 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 5678999999998764 4899999999999999864
No 58
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-37 Score=282.36 Aligned_cols=286 Identities=17% Similarity=0.251 Sum_probs=229.5
Q ss_pred CccCC--eEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717 96 GHKLP--IGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT 170 (437)
Q Consensus 96 ~h~~~--V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~ 170 (437)
+|... +.+++|+++.+++++.| .|++||+.+++....... .|...|.+++|+++. |++|+.||.|++||+.
T Consensus 89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAET----DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC----CTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeec----CCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 66554 55677777777888888 999999999755444432 489999999999765 9999999999999998
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECC-CcceEEEee
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRAS-DLRCLESIK 249 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~ 249 (437)
+++....+ .+|...|.+++|++.++++++.||.|++||++ ....+..+.
T Consensus 165 ~~~~~~~~------------------------------~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 165 SQTKLRTM------------------------------AGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp TCCEEEEE------------------------------CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred CCeEEEEe------------------------------cCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence 87644332 35999999999999999999999999999998 566788888
Q ss_pred cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC-EEEEEe--CCCcEEEEE
Q 013717 250 AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT-VLFSGA--CDRSILVWD 325 (437)
Q Consensus 250 ~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~i~d 325 (437)
.|...|.+++|+|++. |++|+.||.|++||++.. .....+..|...|.+++|+|++. ++++++ .|+.|++||
T Consensus 215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d 290 (401)
T 4aez_A 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS----IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290 (401)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS----SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC----CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence 9999999999999998 999999999999998754 35667778999999999999775 555554 799999999
Q ss_pred CCCCccceEEeeeecccccceEEEEeeCC--EEEE--EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717 326 REDSANHMVVTGALRGHGKAILCLINVAG--LLMS--GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQN 401 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 401 (437)
+++++....+ .+...+.++.++++ ++++ |+.||.|++||+.+++ ......+.+|...|.+++|+|++.
T Consensus 291 ~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~~~~~~~h~~~v~~~~~s~dg~-- 362 (401)
T 4aez_A 291 AATGARVNTV-----DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTKQVDIPAHDTRVLYSALSPDGR-- 362 (401)
T ss_dssp TTTCCEEEEE-----ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEEEEEEECCSSCCCEEEECTTSS--
T ss_pred CCCCCEEEEE-----eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-ceeEEEecCCCCCEEEEEECCCCC--
Confidence 9987643332 24567888888755 7777 4489999999998754 234556789999999999999884
Q ss_pred ceEEEEEecCCCcEEEEeeccCCCCCCCe
Q 013717 402 GVVSVFSGSLDGEIRAWQVSVSCPNSSPL 430 (437)
Q Consensus 402 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 430 (437)
+|++++.||.|++|++..++....+.
T Consensus 363 ---~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 363 ---ILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp ---EEEEECTTSEEEEEECCC--------
T ss_pred ---EEEEEeCCCcEEEEECCCCccccccc
Confidence 89999999999999999887655443
No 59
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-37 Score=275.79 Aligned_cols=251 Identities=24% Similarity=0.344 Sum_probs=203.5
Q ss_pred CCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 139 DSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
.+|.+.|.+++|+++.|++|+.|++|++||+..+.... ...+. ..+|...|.++
T Consensus 11 ~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~-~~~~~-------------------------~~~h~~~v~~v 64 (330)
T 2hes_X 11 KLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTL-IDVLD-------------------------ETAHKKAIRSV 64 (330)
T ss_dssp ECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEE-EEEEC-------------------------TTCCCSCEEEE
T ss_pred ccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEE-EEEEe-------------------------cCCccCCEEEE
Confidence 67999999999999999999999999999998643111 00000 01389999999
Q ss_pred EeCC--CeEEEEECCCcEEEEECCC-------cceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717 219 AVNN--GLIYSVSWDKSLKIWRASD-------LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 219 ~~~~--~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~ 288 (437)
+|+| ++|++|+.|++|++||+.. .+.+..+.+|...|.+++|+|++. |++|+.|+.|++||++......+
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE 144 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCE
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeE
Confidence 9998 8999999999999999853 356677889999999999999998 99999999999999964444456
Q ss_pred eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC----EEEEEeCCCc
Q 013717 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG----LLMSGSADRT 364 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~~~~dg~ 364 (437)
.+..+.+|...|.+++|+|++++|++++.|++|++||...+. ......+.+|...|.++.++++ +|++|+.|++
T Consensus 145 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~ 222 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222 (330)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred EEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence 677888999999999999999999999999999999987542 2245567889999999998864 7999999999
Q ss_pred EEEeeCCCCC-----CeeeeeeecC-CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 365 VRIWQRGSDG-----RFGCLAVLEG-HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 365 i~iwd~~~~~-----~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
|++||+..+. .+.+...+.+ |...|.+++|++++ +|++++.||.|++|++..+
T Consensus 223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~------~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG------LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS------CEEEEETTSCEEEEEEETT
T ss_pred EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC------EEEEEeCCCEEEEEEcCCC
Confidence 9999987542 1134555555 99999999999765 6999999999999998765
No 60
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.7e-36 Score=293.39 Aligned_cols=342 Identities=16% Similarity=0.169 Sum_probs=252.1
Q ss_pred cceeeccccccccccCCC----ceeEEecCCCcceeeeec-CccCCeEEEEee--CC-EEEEEecC-eEEEEeCCCCcee
Q 013717 60 LSLQTLPSVPSLQKLSPD----ETINFSSASHLCINSVQL-GHKLPIGCIAVH--HN-FLYAASSH-EINVYDRTGTTWT 130 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~d----g~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~-~l~s~~~d-~v~vwd~~~~~~~ 130 (437)
..+.+.|....+++.+.+ +.|.+|+. ......+ +|...|.+++|+ ++ +|++++.| .|++||+.++ +
T Consensus 120 ~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~--~ 194 (615)
T 1pgu_A 120 SDISWDFEGRRLCVVGEGRDNFGVFISWDS---GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF--K 194 (615)
T ss_dssp EEEEECTTSSEEEEEECCSSCSEEEEETTT---CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB--E
T ss_pred EEEEEeCCCCEEEEeccCCCCccEEEEEEC---CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc--c
Confidence 467888999999988887 78999983 3456666 999999999999 44 89999999 9999999884 4
Q ss_pred eeeccccCCCCcc---cEEEEEEeCC-e--EEEEecCCeEEEEeCCCCcccccccc---cCccccceeeecCCCCeeEEe
Q 013717 131 SINTFNDNDSSSG---SVKSVTFCDG-K--IFTAHQDCKIRVWQLTPTKHHKLKTT---LPTVNDRLLRFMLPNSYVTVR 201 (437)
Q Consensus 131 ~~~~~~~~~~h~~---~v~~l~~~~~-~--l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 201 (437)
....+ .+|.. .|.+++|+++ . |++++.||.|++||+.+++....+.. ..........+. ....+...
T Consensus 195 ~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 270 (615)
T 1pgu_A 195 FSASD---RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV 270 (615)
T ss_dssp EEEEE---CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE
T ss_pred eeeee---cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE
Confidence 45555 56888 9999999977 4 99999999999999998876655511 111111111222 22222222
Q ss_pred ecc--c-----------eeeecC----CCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEE---
Q 013717 202 RHK--K-----------KLWIEH----GDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAV--- 260 (437)
Q Consensus 202 ~~~--~-----------~~~~~~----~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--- 260 (437)
... . ..+..+ ...+.++.+.. +++++++.||.|++||+.+++.+..+..|...|.+++|
T Consensus 271 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l 350 (615)
T 1pgu_A 271 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPL 350 (615)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTT
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCc
Confidence 111 1 112222 35566666644 88888888888888888887777777666555555555
Q ss_pred ------------------------------ecCCeEEEEeCCCeEEEecCCCCcc-------------------------
Q 013717 261 ------------------------------SAGGTVYTGSADRKIRVWAKPFNEK------------------------- 285 (437)
Q Consensus 261 ------------------------------~~~~~l~~~~~dg~v~iwd~~~~~~------------------------- 285 (437)
.++..+++++.|+.|++||+.....
T Consensus 351 ~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 430 (615)
T 1pgu_A 351 ISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLL 430 (615)
T ss_dssp EEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEE
T ss_pred EEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceE
Confidence 2222367777777777776542110
Q ss_pred -----------------------------------cc----------eee-EEeeCccccEEEEEEccCCCEEEEEeCCC
Q 013717 286 -----------------------------------RH----------ALI-ATLEKHKSAVNALALSDDGTVLFSGACDR 319 (437)
Q Consensus 286 -----------------------------------~~----------~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (437)
.. ... ..+..|...|.+++|+|+|++|++++.||
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 510 (615)
T 1pgu_A 431 ILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 510 (615)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCC
Confidence 00 011 34456788999999999999999999999
Q ss_pred cEEEEECCCCccceEEeeeecc-cccceEEEEeeC------------CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC
Q 013717 320 SILVWDREDSANHMVVTGALRG-HGKAILCLINVA------------GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT 386 (437)
Q Consensus 320 ~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 386 (437)
.|++||+.+++ ....+.+ |...|.++++++ .+|++++.||.|++||+.++. .++..+.+|.
T Consensus 511 ~i~iw~~~~~~----~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~h~ 584 (615)
T 1pgu_A 511 KILLYDLQSRE----VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM--KIIKALNAHK 584 (615)
T ss_dssp CEEEEETTTTE----EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT--CCEEETTSST
T ss_pred eEEEeeCCCCc----ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc--eechhhhcCc
Confidence 99999998765 3444556 899999999865 499999999999999999874 3788899999
Q ss_pred CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 387 KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 387 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
..|++++|+|++ + |++++.||.|++|+++.
T Consensus 585 ~~v~~l~~s~~~-----~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 585 DGVNNLLWETPS-----T-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TCEEEEEEEETT-----E-EEEEETTSCEEEEEEC-
T ss_pred cceEEEEEcCCC-----C-eEEecCCceEEEEeeec
Confidence 999999999998 6 99999999999999975
No 61
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-37 Score=307.85 Aligned_cols=356 Identities=12% Similarity=0.126 Sum_probs=250.9
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceee----------eec-CccCCeEEEEee---CCEEEEEecC-eEEEEeC
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINS----------VQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDR 124 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~----------~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~ 124 (437)
.++.+.|....+++++.||.|++|+........ ..+ +|.++|.+++|+ +..|++|+.| .| +||+
T Consensus 102 ~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~ 180 (902)
T 2oaj_A 102 TSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL 180 (902)
T ss_dssp EEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence 577889999999999999999999997654321 234 899999999999 3689999999 99 9999
Q ss_pred CCCceeeeecccc---------------CCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCccccc--ccccCc--
Q 013717 125 TGTTWTSINTFND---------------NDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKL--KTTLPT-- 183 (437)
Q Consensus 125 ~~~~~~~~~~~~~---------------~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~-- 183 (437)
.+++. ...+.. ...|...|.+++|+|++ |++++.||+|++||+++++.... +.....
T Consensus 181 ~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~ 258 (902)
T 2oaj_A 181 VENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINV 258 (902)
T ss_dssp TTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTS
T ss_pred CCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCC
Confidence 98643 333321 12356889999999775 99999999999999988765432 110000
Q ss_pred -----------cccce--eeec---CCC-Ce-eEEeec-------c-----------------------------ceeee
Q 013717 184 -----------VNDRL--LRFM---LPN-SY-VTVRRH-------K-----------------------------KKLWI 209 (437)
Q Consensus 184 -----------~~~~~--~~~~---~~~-~~-~~~~~~-------~-----------------------------~~~~~ 209 (437)
....+ ..+. .++ .. +..... . ...+.
T Consensus 259 ~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 338 (902)
T 2oaj_A 259 PQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFP 338 (902)
T ss_dssp CCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEEC
T ss_pred CCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEe
Confidence 01111 1111 111 11 111101 0 11121
Q ss_pred -cCCCcEEEEEeCC------------CeEEEEECCCcEEEEECCCcceEEE-------e---------------------
Q 013717 210 -EHGDAVTGLAVNN------------GLIYSVSWDKSLKIWRASDLRCLES-------I--------------------- 248 (437)
Q Consensus 210 -~~~~~v~~~~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~-------~--------------------- 248 (437)
.+...|.++.+.+ ..+++++.||.|++||+.++..... +
T Consensus 339 ~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~ 418 (902)
T 2oaj_A 339 LPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWL 418 (902)
T ss_dssp CSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHH
T ss_pred cCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHH
Confidence 3567777777532 3788999999999999977643322 1
Q ss_pred -------------ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEE--ee-----CccccEEEEEEcc
Q 013717 249 -------------KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT--LE-----KHKSAVNALALSD 307 (437)
Q Consensus 249 -------------~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~-----~~~~~i~~~~~~~ 307 (437)
.+|...+.+++|+|++. |++|+.|++|++||+............ +. +|...|.+++|+|
T Consensus 419 ~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp 498 (902)
T 2oaj_A 419 GALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA 498 (902)
T ss_dssp HHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET
T ss_pred HHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC
Confidence 22333444455678888 999999999999999765321111111 11 6888999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccc-----------------------------------------eEEeeeecccccce
Q 013717 308 DGTVLFSGACDRSILVWDREDSANH-----------------------------------------MVVTGALRGHGKAI 346 (437)
Q Consensus 308 ~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------------------------~~~~~~~~~~~~~i 346 (437)
||++||+|+.||+|++||+.+++.. ......+.+|...|
T Consensus 499 dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V 578 (902)
T 2oaj_A 499 ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKT 578 (902)
T ss_dssp TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSE
T ss_pred CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcE
Confidence 9999999999999999999765210 12345577899999
Q ss_pred EEEEeeCC-EEEEEeCCCcEEEeeCCCCCCee--eeeeec-CCCCCeeEEEEE-----ccCCCCceEEEEEecCCCcEEE
Q 013717 347 LCLINVAG-LLMSGSADRTVRIWQRGSDGRFG--CLAVLE-GHTKPVKSLTAV-----TEEGQNGVVSVFSGSLDGEIRA 417 (437)
Q Consensus 347 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-~h~~~v~~l~~~-----~~~~~~~~~~l~s~~~dg~i~i 417 (437)
.+++|+++ +||+|+.|++|+|||+++..... .+..+. +|.+.|++|+|+ ||+. .+++|++|+.||+|++
T Consensus 579 ~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~--~~~~l~sgs~D~tv~~ 656 (902)
T 2oaj_A 579 SAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY--SSILMVCGTDMGEVIT 656 (902)
T ss_dssp EEEEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS--EEEEEEEEETTSEEEE
T ss_pred EEEEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCC--cceEEEEEecCCcEEE
Confidence 99988755 99999999999999988654110 112343 899999999999 8751 2258999999999999
Q ss_pred Eee
Q 013717 418 WQV 420 (437)
Q Consensus 418 w~~ 420 (437)
||+
T Consensus 657 wd~ 659 (902)
T 2oaj_A 657 YKI 659 (902)
T ss_dssp EEE
T ss_pred EEE
Confidence 999
No 62
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.9e-37 Score=269.53 Aligned_cols=249 Identities=18% Similarity=0.262 Sum_probs=205.5
Q ss_pred CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.+|...|.+++|+++. |++|+.|++|++||+...... . ...+.+|..+|.
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-~---------------------------~~~l~gH~~~V~ 57 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-L---------------------------IDTLTGHEGPVW 57 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC-C---------------------------CEEECCCSSCEE
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE-E---------------------------EEEEccccCCeE
Confidence 5799999999999765 999999999999999753211 1 123357999999
Q ss_pred EEEeCC----CeEEEEECCCcEEEEECCCcc--eEEEeecccccEEEEEEecC--Ce-EEEEeCCCeEEEecCCCCcccc
Q 013717 217 GLAVNN----GLIYSVSWDKSLKIWRASDLR--CLESIKAHEDAVNAVAVSAG--GT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 217 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
+++|++ .+|++|+.||+|++||+++++ .+..+..|...|.+++|+|+ +. |++++.||.|++||++.....
T Consensus 58 ~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~- 136 (297)
T 2pm7_B 58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT- 136 (297)
T ss_dssp EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-
T ss_pred EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-
Confidence 999964 689999999999999998874 55667789999999999997 66 999999999999998754321
Q ss_pred eeeEEeeCccccEEEEEEccC-------------CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC-
Q 013717 288 ALIATLEKHKSAVNALALSDD-------------GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA- 353 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 353 (437)
....+.+|...|.+++|+|+ +++|++|+.|++|++||++++.........+.+|...|.+++|++
T Consensus 137 -~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~ 215 (297)
T 2pm7_B 137 -SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (297)
T ss_dssp -CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred -eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCC
Confidence 13456789999999999997 579999999999999999877655556667889999999999986
Q ss_pred ----CEEEEEeCCCcEEEeeCCCCCCeeeeeee--cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 354 ----GLLMSGSADRTVRIWQRGSDGRFGCLAVL--EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 354 ----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
.+|++++.|++|+|||++..........+ ..|...|.+++|+|++. +|++++.||.|++|+...
T Consensus 216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-----~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-----VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-----CEEEEETTSCEEEEEECT
T ss_pred CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC-----EEEEEcCCCcEEEEEECC
Confidence 38999999999999999864321122233 57889999999999985 699999999999999874
No 63
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-36 Score=267.58 Aligned_cols=258 Identities=19% Similarity=0.273 Sum_probs=205.7
Q ss_pred eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC---C-eEEEEecCCeE
Q 013717 93 VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD---G-KIFTAHQDCKI 164 (437)
Q Consensus 93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~-~l~s~~~dg~i 164 (437)
..+ +|.+.|.+++|+ |++||+|+.| .|+|||+..+..+.+..+ .+|.+.|.+++|++ + .|++|+.|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l---~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE---CCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE---ccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 345 999999999999 9999999999 999999986434445555 68999999999974 2 39999999999
Q ss_pred EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECC
Q 013717 165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRAS 240 (437)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~ 240 (437)
++||+++++.... ..+.+|...|.+++|+| .+|++++.||.|++||++
T Consensus 80 ~iWd~~~~~~~~~----------------------------~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~ 131 (297)
T 2pm7_B 80 MIWKEENGRWSQI----------------------------AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131 (297)
T ss_dssp EEEEBSSSCBCCC----------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred EEEEcCCCceEEE----------------------------EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence 9999987642111 11235889999999987 589999999999999998
Q ss_pred Ccc--eEEEeecccccEEEEEEecC-------------Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEE
Q 013717 241 DLR--CLESIKAHEDAVNAVAVSAG-------------GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALA 304 (437)
Q Consensus 241 ~~~--~~~~~~~~~~~v~~~~~~~~-------------~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 304 (437)
++. ....+.+|...|.+++|+|+ +. |++|+.|+.|++||++...........+.+|...|.+++
T Consensus 132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~ 211 (297)
T 2pm7_B 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (297)
T ss_dssp SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE
Confidence 763 24566789999999999997 34 999999999999998765544556678889999999999
Q ss_pred EccCC---CEEEEEeCCCcEEEEECCCCccceE-EeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeee
Q 013717 305 LSDDG---TVLFSGACDRSILVWDREDSANHMV-VTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGC 378 (437)
Q Consensus 305 ~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~ 378 (437)
|+|++ ++|++++.|++|++||++....... .......|...+.+++|+++ +|++++.||.|+||+......+.+
T Consensus 212 ~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~ 291 (297)
T 2pm7_B 212 WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP 291 (297)
T ss_dssp ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEe
Confidence 99985 8999999999999999986532211 11112467788888888754 999999999999999876554554
Q ss_pred eee
Q 013717 379 LAV 381 (437)
Q Consensus 379 ~~~ 381 (437)
+..
T Consensus 292 ~~~ 294 (297)
T 2pm7_B 292 AGE 294 (297)
T ss_dssp C--
T ss_pred ccc
Confidence 443
No 64
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-36 Score=273.90 Aligned_cols=270 Identities=22% Similarity=0.314 Sum_probs=214.0
Q ss_pred cc-ccccccccCCCceeEEecCCCc------ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717 65 LP-SVPSLQKLSPDETINFSSASHL------CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN 133 (437)
Q Consensus 65 ~~-~~~~~~s~s~dg~i~~~~~~~~------~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~ 133 (437)
.+ ....+++++.|++|++|+.... ..+...+ +|...|.+++|+ +.+|++|+.| +|++||+.+++ .+.
T Consensus 35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~--~~~ 112 (343)
T 2xzm_R 35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT--TYK 112 (343)
T ss_dssp TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC--EEE
T ss_pred cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--EEE
Confidence 44 6778999999999999998542 3455667 999999999999 8999999999 99999999853 344
Q ss_pred ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
.+ .+|...|.+++|+|+. |++++.|++|++||+......... .. .+|
T Consensus 113 ~~---~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~---------------------------~~~ 161 (343)
T 2xzm_R 113 RF---VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA-EK---------------------------ENH 161 (343)
T ss_dssp EE---ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECC-TT---------------------------TSC
T ss_pred EE---cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeee-cc---------------------------cCC
Confidence 44 5799999999999765 999999999999999743211111 00 248
Q ss_pred CCcEEEEEeCC------------CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEe
Q 013717 212 GDAVTGLAVNN------------GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVW 278 (437)
Q Consensus 212 ~~~v~~~~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iw 278 (437)
...|.+++|+| .++++++.||.|++|| ...+....+..|...|.+++|+|++. |++|+.||.|++|
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence 88999999987 3799999999999999 45677778889999999999999998 9999999999999
Q ss_pred cCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeee---------ecccccceEEE
Q 013717 279 AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA---------LRGHGKAILCL 349 (437)
Q Consensus 279 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~~i~~~ 349 (437)
|+..... ....+ .+...|.+++|+|++.+++++ .|+.|++||+.+.+........ ..+|...+.++
T Consensus 241 d~~~~~~---~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 315 (343)
T 2xzm_R 241 DILNLTY---PQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL 315 (343)
T ss_dssp ESSCCSS---CSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred ECCCCcc---cceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence 9853332 22223 245679999999999887655 5888999999876543311111 12677889888
Q ss_pred EeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717 350 INVAG--LLMSGSADRTVRIWQRGSD 373 (437)
Q Consensus 350 ~~~~~--~l~~~~~dg~i~iwd~~~~ 373 (437)
+|+++ +|++|+.||.|++|+++++
T Consensus 316 ~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 316 AWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EECCCCCeEEEecCCceEEEEEEEcc
Confidence 88754 9999999999999998753
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.8e-37 Score=320.54 Aligned_cols=320 Identities=17% Similarity=0.281 Sum_probs=256.2
Q ss_pred cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN 133 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~ 133 (437)
....+.+.|....+++++.||+|.+|+..... .+..+ +|...|.+++|+ +++|++|+.| .|++||+.++ +.+.
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~ 693 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG--KLVH 693 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--ceEE
Confidence 33578999999999999999999999997754 44555 999999999999 8999999999 9999999985 4444
Q ss_pred ccccCCCCcccEEEEEEeCC--e--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717 134 TFNDNDSSSGSVKSVTFCDG--K--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209 (437)
Q Consensus 134 ~~~~~~~h~~~v~~l~~~~~--~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (437)
.+ .+|...|.+++|+++ . +++++.||.|++||+.+++....+ .
T Consensus 694 ~~---~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~------------------------------~ 740 (1249)
T 3sfz_A 694 TY---DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM------------------------------F 740 (1249)
T ss_dssp EE---ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE------------------------------C
T ss_pred EE---cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee------------------------------c
Confidence 44 579999999999963 2 889999999999999987644332 2
Q ss_pred cCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE----------------------------------------
Q 013717 210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES---------------------------------------- 247 (437)
Q Consensus 210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~---------------------------------------- 247 (437)
+|...|.+++|+| +++++++.||.|++||+.+++....
T Consensus 741 ~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~ 820 (1249)
T 3sfz_A 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK 820 (1249)
T ss_dssp CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence 5777777777777 6777777777777777765543322
Q ss_pred --------------ee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCE
Q 013717 248 --------------IK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTV 311 (437)
Q Consensus 248 --------------~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 311 (437)
+. +|...|.+++|+|++. +++++.||.|++||+... ..+..+.+|...|.+++|+|+|++
T Consensus 821 v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~ 896 (1249)
T 3sfz_A 821 VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRGHLSWVHGVMFSPDGSS 896 (1249)
T ss_dssp EEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeeecCCCccceEEEEECCCCCE
Confidence 22 5677899999999998 999999999999988654 467788899999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCccce----------------------------EEee-----eecccccceEEEEeeC--CEE
Q 013717 312 LFSGACDRSILVWDREDSANHM----------------------------VVTG-----ALRGHGKAILCLINVA--GLL 356 (437)
Q Consensus 312 l~~~~~dg~i~i~d~~~~~~~~----------------------------~~~~-----~~~~~~~~i~~~~~~~--~~l 356 (437)
|++++.||.|++||+....... .... ....+...+.++++++ +++
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 976 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence 9999999999999975311000 0000 0011234566666664 499
Q ss_pred EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 357 MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 357 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
++|+.||.|++||+.++. .+..+.+|...|++++|+|++. +|++++.||.|++|++.+++.
T Consensus 977 ~~g~~~g~i~i~d~~~~~---~~~~~~~h~~~v~~l~~s~dg~-----~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNR---VFSSGVGHKKAVRHIQFTADGK-----TLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp EEEETTSCCEEEETTTTS---CEEECCCCSSCCCCEEECSSSS-----CEEEECSSSBEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEcCCCc---eeeecccCCCceEEEEECCCCC-----EEEEEcCCCEEEEEECCCCce
Confidence 999999999999999876 6778889999999999999985 699999999999999987653
No 66
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-36 Score=317.91 Aligned_cols=348 Identities=18% Similarity=0.247 Sum_probs=279.3
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee----CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTGTTWTSIN 133 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~~~~~~~~ 133 (437)
.++.+.|....+++++.||.|.+|+.... .++..+ +|...|.+++|+ +.++++|+.| .|++||+.++. ...
T Consensus 661 ~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~--~~~ 737 (1249)
T 3sfz_A 661 LCCAFSSDDSYIATCSADKKVKIWDSATG-KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE--CRN 737 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS--EEE
T ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc--hhh
Confidence 57889999999999999999999999874 555666 999999999997 4589999999 99999999853 344
Q ss_pred ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCcc------------ccceeeecCCCCeeE
Q 013717 134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTV------------NDRLLRFMLPNSYVT 199 (437)
Q Consensus 134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 199 (437)
.+ .+|...|.+++|+++. +++++.||.|++||+.+++........... ......+......+.
T Consensus 738 ~~---~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 738 TM---FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp EE---CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred ee---cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 44 5799999999999765 999999999999999877644333211100 000111122222222
Q ss_pred Eeeccc-------------eeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCC
Q 013717 200 VRRHKK-------------KLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG 264 (437)
Q Consensus 200 ~~~~~~-------------~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 264 (437)
...... ....+|...|.+++|++ .++++++.||.|++||+.+++.+..+.+|...|.+++|+|++
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC
Confidence 221111 12237899999999998 999999999999999999999999999999999999999999
Q ss_pred e-EEEEeCCCeEEEecCCCCc-----------------------------------------------------------
Q 013717 265 T-VYTGSADRKIRVWAKPFNE----------------------------------------------------------- 284 (437)
Q Consensus 265 ~-l~~~~~dg~v~iwd~~~~~----------------------------------------------------------- 284 (437)
. +++++.||.|++||+....
T Consensus 895 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 974 (1249)
T 3sfz_A 895 SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE 974 (1249)
T ss_dssp SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS
T ss_pred CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC
Confidence 8 9999999999999853200
Q ss_pred ----------------ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEE
Q 013717 285 ----------------KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILC 348 (437)
Q Consensus 285 ----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 348 (437)
........+.+|...|.+++|+|+|++|++++.||.|++||+.+++.. ...+|...+.+
T Consensus 975 ~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~v~~ 1049 (1249)
T 3sfz_A 975 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-----FLQAHQETVKD 1049 (1249)
T ss_dssp EEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-----CCBCCSSCEEE
T ss_pred EEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-----EEecCCCcEEE
Confidence 011223445578889999999999999999999999999999876532 24578899999
Q ss_pred EEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717 349 LINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 349 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 426 (437)
+.+.++ .+++++.||.|++||+.+++ .+..+.+|.+.|++++|+|++. +|++++.||.|++||+..+.+.
T Consensus 1050 ~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~s~d~~-----~l~s~s~d~~v~iwd~~~~~~~ 1120 (1249)
T 3sfz_A 1050 FRLLQDSRLLSWSFDGTVKVWNVITGR---IERDFTCHQGTVLSCAISSDAT-----KFSSTSADKTAKIWSFDLLSPL 1120 (1249)
T ss_dssp EEECSSSEEEEEESSSEEEEEETTTTC---CCEEEECCSSCCCCEEECSSSS-----SCEEECCSSCCCEECSSSSSCS
T ss_pred EEEcCCCcEEEEECCCcEEEEECCCCc---eeEEEcccCCcEEEEEECCCCC-----EEEEEcCCCcEEEEECCCccee
Confidence 998876 89999999999999999877 7788899999999999999985 6999999999999999887654
No 67
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-37 Score=285.64 Aligned_cols=287 Identities=15% Similarity=0.198 Sum_probs=233.1
Q ss_pred CccCCeEEEEee--CC-EEEEE----------ecC-eEEEEeCCCCcee-eeeccccCCCCcccEEEEEEeCCe--EEEE
Q 013717 96 GHKLPIGCIAVH--HN-FLYAA----------SSH-EINVYDRTGTTWT-SINTFNDNDSSSGSVKSVTFCDGK--IFTA 158 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~-~l~s~----------~~d-~v~vwd~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 158 (437)
.+...|.+++|+ ++ +|++| +.| .|++||+.++... .... ..|...|.+++|+++. |+++
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~ 85 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS----LQVDSKFNDLDWSHNNKIIAGA 85 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC----CCCSSCEEEEEECSSSSCEEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE----EecCCceEEEEECCCCCeEEEE
Confidence 455678999999 55 89999 788 9999999985322 2222 2588999999999765 9999
Q ss_pred ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEE
Q 013717 159 HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLK 235 (437)
Q Consensus 159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~ 235 (437)
+.||.|++||+.+...... ....+.+|...|.+++|++ .+|++++.||.|+
T Consensus 86 ~~dg~v~vw~~~~~~~~~~--------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 86 LDNGSLELYSTNEANNAIN--------------------------SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp ESSSCEEEECCSSTTSCCC--------------------------EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred ccCCeEEEeeccccccccc--------------------------chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 9999999999987321100 0112246999999999986 7999999999999
Q ss_pred EEECCCcc------eEEE---eecccccEEEEEEecC-Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCc------cc
Q 013717 236 IWRASDLR------CLES---IKAHEDAVNAVAVSAG-GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH------KS 298 (437)
Q Consensus 236 iwd~~~~~------~~~~---~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~~ 298 (437)
+||+.+++ .... +..|...|.+++|+|+ +. +++++.||.|++||++... .+..+..+ ..
T Consensus 140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~ 215 (416)
T 2pm9_A 140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK----EVIHLSYTSPNSGIKQ 215 (416)
T ss_dssp BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE----EEEEECCCCCSSCCCC
T ss_pred EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC----cceEEeccccccccCC
Confidence 99999886 3333 3578899999999998 45 9999999999999987543 45555555 78
Q ss_pred cEEEEEEccCC-CEEEEEeCCC---cEEEEECCCCccceEEeeeec-ccccceEEEEeeC---CEEEEEeCCCcEEEeeC
Q 013717 299 AVNALALSDDG-TVLFSGACDR---SILVWDREDSANHMVVTGALR-GHGKAILCLINVA---GLLMSGSADRTVRIWQR 370 (437)
Q Consensus 299 ~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~---~~l~~~~~dg~i~iwd~ 370 (437)
.|.+++|+|++ .+|++++.|+ .|++||++++.. ....+. +|...|.++.+++ .+|++++.||.|++||+
T Consensus 216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT---PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS---CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC---CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 89999999997 6899999998 999999987632 223345 7899999999865 49999999999999999
Q ss_pred CCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717 371 GSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 371 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 426 (437)
++++ ++..+.+|...|.+++|+|+++. +|++++.||.|++|++......
T Consensus 293 ~~~~---~~~~~~~~~~~v~~~~~s~~~~~----~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 293 ESAE---QLSQFPARGNWCFKTKFAPEAPD----LFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp SSCC---EEEEEECSSSCCCCEEECTTCTT----EEEECCSSSEEEEEESCCCCCS
T ss_pred CCCc---cceeecCCCCceEEEEECCCCCC----EEEEEecCCcEEEEEccCCCCC
Confidence 9876 78889999999999999998754 8999999999999999887643
No 68
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-36 Score=281.44 Aligned_cols=274 Identities=16% Similarity=0.161 Sum_probs=219.0
Q ss_pred CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCc
Q 013717 99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTK 173 (437)
Q Consensus 99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~ 173 (437)
..+++++|+ +++|++++.| .|++||+.++ .....+ ..| ..+....|+++. |++++.||.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~--~~~~~~---~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR--DGSKML---KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSE--ETTTTS---CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccc--ceeeEE---ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc
Confidence 345578888 9999999999 9999999883 333333 334 334444566543 9999999999999998775
Q ss_pred ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecc
Q 013717 174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAH 251 (437)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (437)
....+ .+|...|.+++|+| ++|++|+.||.|++||+.+++.+..+.+|
T Consensus 131 ~~~~~------------------------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 180 (420)
T 3vl1_A 131 QREID------------------------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180 (420)
T ss_dssp EEEET------------------------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC
T ss_pred eeeec------------------------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC
Confidence 43332 25999999999998 79999999999999999999999999999
Q ss_pred cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC---cccc---------------------EEEEEEc
Q 013717 252 EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK---HKSA---------------------VNALALS 306 (437)
Q Consensus 252 ~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~---------------------i~~~~~~ 306 (437)
...|.+++|+|++. |++++.||.|++||++... .+..+.. +... +.+++|+
T Consensus 181 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s 256 (420)
T 3vl1_A 181 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT----TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE----EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc----eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence 99999999999998 9999999999999987543 4444443 3334 4445567
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeec
Q 013717 307 DDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLE 383 (437)
Q Consensus 307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 383 (437)
|++++|++|+.||.|++||+++++....+ ...|...+.++.++++ +|++|+.||.|++||+++++ .++..+.
T Consensus 257 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~ 331 (420)
T 3vl1_A 257 TYGKYVIAGHVSGVITVHNVFSKEQTIQL---PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFL 331 (420)
T ss_dssp CTTEEEEEEETTSCEEEEETTTCCEEEEE---CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeEEc---ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--Cchhhhh
Confidence 89999999999999999999887643332 3467889999998865 99999999999999999876 2456666
Q ss_pred C-CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 384 G-HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 384 ~-h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
+ |...|.++.+. ++ .+|++++.||.|++|++..+
T Consensus 332 ~~~~~~v~~~~~~-~~-----~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 332 INEGTPINNVYFA-AG-----ALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ESTTSCEEEEEEE-TT-----EEEEEETTTEEEEEEEECCT
T ss_pred ccCCCCceEEEeC-CC-----CEEEEecCCccEEEEeccCC
Confidence 5 67788888655 44 38999999999999999874
No 69
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.4e-35 Score=261.89 Aligned_cols=269 Identities=23% Similarity=0.392 Sum_probs=224.4
Q ss_pred ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717 59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT 134 (437)
Q Consensus 59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~ 134 (437)
..++.+.|....+++++.||.+.+|+..... ....+ +|...|.+++|+ +++|++|+.| .|++||+.++ +.+..
T Consensus 26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~ 102 (312)
T 4ery_A 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKT 102 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEE
T ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC--cEEEE
Confidence 3578999999999999999999999987644 44555 999999999999 8999999999 9999999985 34444
Q ss_pred cccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717 135 FNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG 212 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (437)
+ .+|...|.+++|+++. |++++.|+.|++||+++++....+ ..|.
T Consensus 103 ~---~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------------------------~~~~ 149 (312)
T 4ery_A 103 L---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------------------------PAHS 149 (312)
T ss_dssp E---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE------------------------------CCCS
T ss_pred E---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe------------------------------cCCC
Confidence 4 5799999999999765 999999999999999877543322 3588
Q ss_pred CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717 213 DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 213 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~ 288 (437)
.+|.+++|++ .++++++.||.|++||+++++.+..+. .+...+.+++|+|++. +++++.||.|++||++.. +
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~ 225 (312)
T 4ery_A 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG----K 225 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT----E
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC----c
Confidence 9999999998 899999999999999999998887764 4567899999999998 999999999999998754 3
Q ss_pred eeEEeeCccccE---EEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEe--C
Q 013717 289 LIATLEKHKSAV---NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGS--A 361 (437)
Q Consensus 289 ~~~~~~~~~~~i---~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~--~ 361 (437)
.+..+.+|...+ ......+++.+|++|+.||.|++||+++++ ....+.+|...|.+++++++ ++++++ .
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~ 301 (312)
T 4ery_A 226 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEN 301 (312)
T ss_dssp EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC----EEEEECCCSSCEEEEEECSSSSEEEEEECTT
T ss_pred EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch----hhhhhhccCCcEEEEeecCcCCceEEEEccC
Confidence 566666665543 223334678899999999999999998765 45567889999999998765 888886 6
Q ss_pred CCcEEEeeCC
Q 013717 362 DRTVRIWQRG 371 (437)
Q Consensus 362 dg~i~iwd~~ 371 (437)
|+.|++|+.+
T Consensus 302 d~~i~~W~~d 311 (312)
T 4ery_A 302 DKTIKLWKSD 311 (312)
T ss_dssp TCCEEEEECC
T ss_pred CccEEEecCC
Confidence 9999999864
No 70
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.5e-36 Score=291.17 Aligned_cols=315 Identities=18% Similarity=0.216 Sum_probs=251.1
Q ss_pred cceeeccccccccccCCCceeEEecCCCcc---eeeeec-CccCC-eEEEEee----CCEEEEEecC-eEEEEeCCCC--
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLC---INSVQL-GHKLP-IGCIAVH----HNFLYAASSH-EINVYDRTGT-- 127 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~---~~~~~~-~h~~~-V~~l~~~----~~~l~s~~~d-~v~vwd~~~~-- 127 (437)
..+.+.|....++..+ ++.+.+|+..... .....+ +|... |.+++|+ +++|++|+.| .|++||+.++
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~ 100 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE 100 (615)
T ss_dssp CCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred eEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc
Confidence 4678999999888777 8899999997541 455556 99999 9999997 4899999999 9999999754
Q ss_pred ----ceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC----CeEEEEeCCCCcccccccccCccccceeeecCCCCe
Q 013717 128 ----TWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD----CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSY 197 (437)
Q Consensus 128 ----~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (437)
.......+ ..|...|.+++|+++. |++++.+ +.|++||. ++...
T Consensus 101 ~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~--------------------- 154 (615)
T 1pgu_A 101 SNSVEVNVKSEF---QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLG--------------------- 154 (615)
T ss_dssp GTEEEEEEEEEE---ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEEE---------------------
T ss_pred cccccccccchh---hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCcce---------------------
Confidence 34455554 5689999999999775 8888877 68999983 32221
Q ss_pred eEEeeccceeeecCCCcEEEEEeCC--C-eEEEEECCCcEEEEECCCcceEEEeecccc---cEEEEEEecC-Ce-EEEE
Q 013717 198 VTVRRHKKKLWIEHGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLRCLESIKAHED---AVNAVAVSAG-GT-VYTG 269 (437)
Q Consensus 198 ~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~-~~-l~~~ 269 (437)
.+.+|...|.+++|++ . .+++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+ +. ++++
T Consensus 155 ---------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (615)
T 1pgu_A 155 ---------EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV 225 (615)
T ss_dssp ---------ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred ---------eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE
Confidence 1236999999999999 3 899999999999999999999999999998 9999999999 88 9999
Q ss_pred eCCCeEEEecCCCCcccceeeEEe-e---CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccc
Q 013717 270 SADRKIRVWAKPFNEKRHALIATL-E---KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA 345 (437)
Q Consensus 270 ~~dg~v~iwd~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 345 (437)
+.||.|++||++... .+..+ . .|...|.+++|+ ++++|++++.||.|++||+++++....+......+...
T Consensus 226 ~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 300 (615)
T 1pgu_A 226 GSDRKISCFDGKSGE----FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ 300 (615)
T ss_dssp ETTCCEEEEETTTCC----EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGC
T ss_pred eCCCeEEEEECCCCC----EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCc
Confidence 999999999987543 55666 5 799999999999 99999999999999999998876443333221223455
Q ss_pred eEEEEe-eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc---------------------------
Q 013717 346 ILCLIN-VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE--------------------------- 397 (437)
Q Consensus 346 i~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~--------------------------- 397 (437)
+.++.+ +++++++++.||.|++||+.+++ .+..+.+|...|++++| |+
T Consensus 301 ~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~---~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~ 376 (615)
T 1pgu_A 301 QVGVVATGNGRIISLSLDGTLNFYELGHDE---VLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIV 376 (615)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEETTEEE---EEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEE
T ss_pred eeEEEeCCCCeEEEEECCCCEEEEECCCCc---EEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceE
Confidence 666665 56799999999999999998744 66677777766666666 43
Q ss_pred ------CCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 398 ------EGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 398 ------~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
+. +|++++.||.|++|++..++
T Consensus 377 ~~~~~~~~-----~l~~~~~d~~i~~~~~~~~~ 404 (615)
T 1pgu_A 377 SLDNSKAQ-----EYSSISWDDTLKVNGITKHE 404 (615)
T ss_dssp EEECCSTT-----CCEEEETTTEEEETTEEEEE
T ss_pred EEEECCCc-----EEEEEeCCCCEEEEEcccCc
Confidence 22 57777777777777777654
No 71
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1e-36 Score=270.88 Aligned_cols=260 Identities=17% Similarity=0.243 Sum_probs=200.8
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC----CeEEEEecCCeEEEEe
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD----GKIFTAHQDCKIRVWQ 168 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~~~dg~i~iwd 168 (437)
+|.+.|.+++|+ |++||+|+.| +|+|||+.++....+..+ .+|.+.|.+++|++ +.|++|+.|++|++||
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l---~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL---RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE---ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE---cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 999999999998 9999999999 999999987644444555 68999999999974 2399999999999999
Q ss_pred CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcce
Q 013717 169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRC 244 (437)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~ 244 (437)
+++++.... ..+.+|...|.+++|+| .+|++|+.|+.|++||++.+..
T Consensus 88 ~~~~~~~~~----------------------------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~ 139 (316)
T 3bg1_A 88 EENGTWEKS----------------------------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ 139 (316)
T ss_dssp CSSSCCCEE----------------------------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred CCCCcceEE----------------------------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence 986532111 12246999999999987 4899999999999999987632
Q ss_pred ---EEEeecccccEEEEEEecC-----------------Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEE
Q 013717 245 ---LESIKAHEDAVNAVAVSAG-----------------GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL 303 (437)
Q Consensus 245 ---~~~~~~~~~~v~~~~~~~~-----------------~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 303 (437)
...+..|...|.+++|+|+ +. |++|+.|+.|++||++.. .....+..+.+|...|.++
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l~~h~~~V~~v 218 (316)
T 3bg1_A 140 WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-GQWKEEQKLEAHSDWVRDV 218 (316)
T ss_dssp EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT-SCEEEEECCBCCSSCEEEE
T ss_pred cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC-CccceeeecccCCCceEEE
Confidence 2344578889999999997 34 999999999999998532 2234566788999999999
Q ss_pred EEccCC----CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCee
Q 013717 304 ALSDDG----TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFG 377 (437)
Q Consensus 304 ~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~ 377 (437)
+|+|++ ++|++++.||+|++||+++..........+..|...|.+++|+++ +|++++.||.|+||+......+.
T Consensus 219 ~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~ 298 (316)
T 3bg1_A 219 AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWV 298 (316)
T ss_dssp ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEE
T ss_pred EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEE
Confidence 999986 899999999999999997632110011123457888999998765 99999999999999987555556
Q ss_pred eeeeecCCCC
Q 013717 378 CLAVLEGHTK 387 (437)
Q Consensus 378 ~~~~~~~h~~ 387 (437)
++..+....+
T Consensus 299 ~~~~~~~~~~ 308 (316)
T 3bg1_A 299 CISDVNKGQG 308 (316)
T ss_dssp EEEECC----
T ss_pred EeeeccCCCC
Confidence 6666654443
No 72
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.7e-36 Score=277.95 Aligned_cols=272 Identities=24% Similarity=0.373 Sum_probs=228.4
Q ss_pred eeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCC
Q 013717 63 QTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS 140 (437)
Q Consensus 63 ~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~ 140 (437)
.+.+....+++++.||.|.+|+.... .+...+ +|...|.+++|++++|++|+.| .|++||+.++ +.+..+ .+
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~---~~ 211 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG--EMLNTL---IH 211 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSC-CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC--CEEEEE---CC
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCC-eEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC--cEEEEE---cC
Confidence 44457788999999999999998764 455566 9999999999999999999999 9999999985 344444 57
Q ss_pred CcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717 141 SSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV 220 (437)
Q Consensus 141 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (437)
|...|.+++|+++.+++|+.||.|++||+.+++..... ..+.+|...|.++++
T Consensus 212 h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---------------------------~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 212 HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR---------------------------RVLVGHRAAVNVVDF 264 (435)
T ss_dssp CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEE---------------------------EEECCCSSCEEEEEE
T ss_pred CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceee---------------------------eEecCCCCcEEEEEe
Confidence 99999999999989999999999999999876543211 223469999999999
Q ss_pred CCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccE
Q 013717 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAV 300 (437)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i 300 (437)
+++++++|+.||.|++||+++++.+..+..|...|.+++++ ...+++|+.||.|++||++.. ..+..+.+|...|
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v 339 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELV 339 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTC----CEEEEECCCSSCE
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECCCC----CEEEEEeCCcCcE
Confidence 88999999999999999999999999999999999999995 334999999999999998754 4677888999999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCccce-----EEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717 301 NALALSDDGTVLFSGACDRSILVWDREDSANHM-----VVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
.+++| ++++|++|+.||.|++||++.+.... .....+.+|...|.++.+++.+|++|+.||.|++||+.+..
T Consensus 340 ~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 340 RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence 99999 68899999999999999986543110 13445678999999999999999999999999999998755
No 73
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.3e-36 Score=267.59 Aligned_cols=249 Identities=18% Similarity=0.226 Sum_probs=199.4
Q ss_pred CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.+|.+.|.+++|+++. |++|+.|++|++||+.+++... ...+.+|...|.
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~----------------------------~~~l~gH~~~V~ 61 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQIL----------------------------IADLRGHEGPVW 61 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEE----------------------------EEEEECCSSCEE
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEE----------------------------EEEEcCCCccEE
Confidence 5799999999999654 9999999999999997653211 122357999999
Q ss_pred EEEeCC----CeEEEEECCCcEEEEECCCc--ceEEEeecccccEEEEEEecC--Ce-EEEEeCCCeEEEecCCCCcccc
Q 013717 217 GLAVNN----GLIYSVSWDKSLKIWRASDL--RCLESIKAHEDAVNAVAVSAG--GT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 217 ~~~~~~----~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
+++|++ ++|++|+.|++|++||++++ +.+..+.+|...|.+++|+|+ +. |++|+.||.|++||++... ..
T Consensus 62 ~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-~~ 140 (316)
T 3bg1_A 62 QVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-QW 140 (316)
T ss_dssp EEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-CE
T ss_pred EEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-Cc
Confidence 999963 78999999999999999887 456677789999999999997 66 9999999999999987532 22
Q ss_pred eeeEEeeCccccEEEEEEccC-----------------CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE
Q 013717 288 ALIATLEKHKSAVNALALSDD-----------------GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI 350 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 350 (437)
.....+.+|...+.+++|+|+ +++|++|+.|+.|++||++... .......+.+|...|.+++
T Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEE
T ss_pred ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEE
Confidence 233455678889999999997 4789999999999999997542 2224456788999999999
Q ss_pred eeC------CEEEEEeCCCcEEEeeCCCCCC-eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 351 NVA------GLLMSGSADRTVRIWQRGSDGR-FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 351 ~~~------~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
|++ .+|++++.||+|+||++..... ......+..|...|.+++|+|++. +|++++.||.|++|+...
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-----~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-----ILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-----CEEEEESSSCEEEEEECT
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-----EEEEEcCCCeEEEEEECC
Confidence 976 4799999999999999986321 112344567899999999999985 699999999999999864
No 74
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.9e-35 Score=267.44 Aligned_cols=270 Identities=17% Similarity=0.230 Sum_probs=223.0
Q ss_pred eccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCC
Q 013717 64 TLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDND 139 (437)
Q Consensus 64 ~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~ 139 (437)
+.++...+++++.|+.|.+|+........... .|...|.+++|+ +++|++|+.| .|++||+.++ +.+..+ .
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~---~ 173 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTM---A 173 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEE---C
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEe---c
Confidence 44455678889999999999997755444444 699999999999 8999999999 9999999985 344444 5
Q ss_pred CCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717 140 SSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA 219 (437)
Q Consensus 140 ~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (437)
+|...|.+++|+++.+++++.||.|++||++..... ...+.+|...|.+++
T Consensus 174 ~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------------~~~~~~~~~~v~~~~ 224 (401)
T 4aez_A 174 GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQ-----------------------------IGTLQGHSSEVCGLA 224 (401)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE-----------------------------EEEEECCSSCEEEEE
T ss_pred CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcce-----------------------------eeEEcCCCCCeeEEE
Confidence 799999999998888999999999999999854311 122346999999999
Q ss_pred eCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEe--CCCeEEEecCCCCcccceeeEEe
Q 013717 220 VNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGS--ADRKIRVWAKPFNEKRHALIATL 293 (437)
Q Consensus 220 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~--~dg~v~iwd~~~~~~~~~~~~~~ 293 (437)
|++ .+|++|+.||.|++||+++++.+..+..|...|.+++|+|++. +++++ .|+.|++||+.... .+..+
T Consensus 225 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~----~~~~~ 300 (401)
T 4aez_A 225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA----RVNTV 300 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC----EEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC----EEEEE
Confidence 998 8999999999999999999999999989999999999999876 55554 79999999987543 45555
Q ss_pred eCccccEEEEEEccCCCEEEEE--eCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEee
Q 013717 294 EKHKSAVNALALSDDGTVLFSG--ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQ 369 (437)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd 369 (437)
. +...|.+++|+|++++|+++ +.||.|++||+.+++.. ....+.+|...|.++.++++ +|++++.||.|++|+
T Consensus 301 ~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~--~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 301 D-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT--KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp E-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE--EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred e-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce--eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 4 66789999999999999994 48999999999875432 33345688999998888755 999999999999999
Q ss_pred CCCCC
Q 013717 370 RGSDG 374 (437)
Q Consensus 370 ~~~~~ 374 (437)
+.+++
T Consensus 378 ~~~~~ 382 (401)
T 4aez_A 378 VYDGD 382 (401)
T ss_dssp CCC--
T ss_pred CCCCc
Confidence 99876
No 75
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-34 Score=260.24 Aligned_cols=275 Identities=23% Similarity=0.312 Sum_probs=221.9
Q ss_pred cceeeccc-cccccccCCCceeEEecCCCc----ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee
Q 013717 60 LSLQTLPS-VPSLQKLSPDETINFSSASHL----CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT 130 (437)
Q Consensus 60 ~~~~~~~~-~~~~~s~s~dg~i~~~~~~~~----~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~ 130 (437)
.++.+.|. ...+++++.|++|++|++... ..+...+ +|...|.+++|+ +++|++|+.| .|++|+.......
T Consensus 42 ~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~ 121 (340)
T 4aow_A 42 TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT 121 (340)
T ss_dssp EEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccccee
Confidence 57889987 468999999999999998543 3456667 999999999999 8999999999 9999999986443
Q ss_pred eeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717 131 SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW 208 (437)
Q Consensus 131 ~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (437)
... ..+...+..+.+.++. |++++.|+.+++||+......... .
T Consensus 122 ~~~-----~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~-----------------------------~ 167 (340)
T 4aow_A 122 RRF-----VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ-----------------------------D 167 (340)
T ss_dssp EEE-----ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC-----------------------------S
T ss_pred eee-----cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE-----------------------------e
Confidence 333 2477788888888554 999999999999998765432211 1
Q ss_pred ecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC
Q 013717 209 IEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN 283 (437)
Q Consensus 209 ~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~ 283 (437)
.+|...+..+++.+ .++++++.|+.|++||+++++.+..+.+|...|++++|+|++. |++|+.||.|++||++..
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 35889999999976 5788999999999999999999999999999999999999998 999999999999998754
Q ss_pred cccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEe-----eeecccccceEEEEeeCC--EE
Q 013717 284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT-----GALRGHGKAILCLINVAG--LL 356 (437)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~--~l 356 (437)
. .+..+. +...+.++.|+|++.+ ++++.|+.|++||++.......+. ....+|...|.+++|+++ +|
T Consensus 248 ~----~~~~~~-~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 321 (340)
T 4aow_A 248 K----HLYTLD-GGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 321 (340)
T ss_dssp E----EEEEEE-CSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEE
T ss_pred c----eeeeec-CCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEE
Confidence 3 455555 4568999999998755 456679999999998765333222 223578889999988765 99
Q ss_pred EEEeCCCcEEEeeCCCCC
Q 013717 357 MSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 357 ~~~~~dg~i~iwd~~~~~ 374 (437)
++|+.||.|+|||+++|.
T Consensus 322 ~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 322 FAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEETTSCEEEEEEEC--
T ss_pred EEEeCCCEEEEEeCCCcC
Confidence 999999999999999875
No 76
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.4e-35 Score=262.37 Aligned_cols=281 Identities=17% Similarity=0.225 Sum_probs=229.7
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT 170 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~ 170 (437)
-|.++|.+++|+ |++++++..+ .+.+|+.... ...... .+|...|.+++|+++. +++++ ||.|++||+.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~ 80 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH-ARQINT----LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS 80 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE-EEEEEE----ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETT
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCc-ccccee----ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECC
Confidence 456789999999 8999888877 7767765542 223333 2699999999999776 66666 9999999998
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc--eEE
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR--CLE 246 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~ 246 (437)
+++.......+. ..+|...|.+++|++ +++++++.||.|++||+.+++ ...
T Consensus 81 ~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 135 (337)
T 1gxr_A 81 HPGNKSPVSQLD-------------------------CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp STTCCSCSEEEE-------------------------CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred CCCceeeeeccc-------------------------ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee
Confidence 765433322110 015889999999998 789999999999999999887 566
Q ss_pred EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717 247 SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325 (437)
Q Consensus 247 ~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (437)
.+..|...|.+++|+|++. +++++.||.|++||++.. +.+..+..|...|.+++|+|++++|++++.||.|++||
T Consensus 136 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 211 (337)
T 1gxr_A 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211 (337)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence 6778899999999999998 999999999999998754 46777888999999999999999999999999999999
Q ss_pred CCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCce
Q 013717 326 REDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV 403 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 403 (437)
+++++..... .+...+.++.++++ +|++++.||.|++||+...+ ...+..|...|.+++|+|++.
T Consensus 212 ~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~---- 278 (337)
T 1gxr_A 212 LREGRQLQQH-----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGK---- 278 (337)
T ss_dssp TTTTEEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSS----
T ss_pred CCCCceEeee-----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCC----
Confidence 9877533322 35677888887654 99999999999999999865 346788999999999999884
Q ss_pred EEEEEecCCCcEEEEeeccCCC
Q 013717 404 VSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 404 ~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
+|++++.||.|++|++..++.
T Consensus 279 -~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 279 -WFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp -EEEEEETTSEEEEEETTTCCE
T ss_pred -EEEEecCCCcEEEEECCCCeE
Confidence 799999999999999988764
No 77
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-36 Score=274.45 Aligned_cols=281 Identities=12% Similarity=0.129 Sum_probs=215.7
Q ss_pred cccceeeccccccccccCCCceeEEecCCCcc-eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc-eee
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLC-INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT-WTS 131 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~-~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~-~~~ 131 (437)
+..++.+.|....+++++.|+.|.+|+..... .+...+ +|...|.+++|+ +++|++++.| .|++||+.++. ...
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 44678999999999999999999999997654 667777 999999999999 8999999999 99999999864 223
Q ss_pred eeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717 132 INTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209 (437)
Q Consensus 132 ~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (437)
...+ .+|...|.+++|+++. |++++.|+.|++||+++++...... .+.
T Consensus 93 ~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------------------------~~~ 142 (377)
T 3dwl_C 93 TLVL---LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK---------------------------HLK 142 (377)
T ss_dssp EEEC---CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE---------------------------EEC
T ss_pred eeEe---cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee---------------------------Eee
Confidence 3333 5799999999999765 9999999999999998775322222 122
Q ss_pred c-CCCcEEEEEeCC--CeEEEEECCCcEEEEECC------------------CcceEEEeecccccEEEEEEecCCe-EE
Q 013717 210 E-HGDAVTGLAVNN--GLIYSVSWDKSLKIWRAS------------------DLRCLESIKAHEDAVNAVAVSAGGT-VY 267 (437)
Q Consensus 210 ~-~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~-l~ 267 (437)
+ |...|.+++|+| .+|++++.||.|++||+. .++++..+ .|...|.+++|+|++. |+
T Consensus 143 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 143 RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 4 899999999998 799999999999999985 35566666 8999999999999999 99
Q ss_pred EEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc---------------
Q 013717 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH--------------- 332 (437)
Q Consensus 268 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------------- 332 (437)
+++.||.|++||+.........+..+..|...|.+++|+|++++|++++.++.+ +|+.......
T Consensus 222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT 300 (377)
T ss_dssp EEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred EEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence 999999999999987654444467788899999999999999999998766655 7766521100
Q ss_pred ---------------------eEE------------eeeecccccceEEEEeeCC------EEEEEeCCCcEEEeeC
Q 013717 333 ---------------------MVV------------TGALRGHGKAILCLINVAG------LLMSGSADRTVRIWQR 370 (437)
Q Consensus 333 ---------------------~~~------------~~~~~~~~~~i~~~~~~~~------~l~~~~~dg~i~iwd~ 370 (437)
..+ ......|...|.++.+.+. .|++|+.||.|+|||+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000 0011238889999886432 6999999999999985
No 78
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-34 Score=291.05 Aligned_cols=285 Identities=18% Similarity=0.291 Sum_probs=240.2
Q ss_pred eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeE
Q 013717 91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKI 164 (437)
Q Consensus 91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i 164 (437)
..+.+ +|.+.|.+++|+ +++|++|+.+ .|+|||+.++ .....+ .+|...|.+++|+++. |++++.||.|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--VEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRI 79 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--ceEEEE---ecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence 34556 999999999999 8999999999 9999999885 344444 4699999999999765 9999999999
Q ss_pred EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc
Q 013717 165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL 242 (437)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 242 (437)
++||+.+++....+ .+|...|.+++|+| .++++++.||.|++||+.++
T Consensus 80 ~vw~~~~~~~~~~~------------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 129 (814)
T 3mkq_A 80 RVFNYNTGEKVVDF------------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (814)
T ss_dssp EEEETTTCCEEEEE------------------------------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred EEEECCCCcEEEEE------------------------------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence 99999987644332 36999999999998 78999999999999999887
Q ss_pred -ceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEcc--CCCEEEEEe
Q 013717 243 -RCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSD--DGTVLFSGA 316 (437)
Q Consensus 243 -~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~ 316 (437)
.....+..|...|.+++|+| ++. +++++.||.|++||+.... ....+.. +...+.+++|+| ++.+|++++
T Consensus 130 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS----CSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----ceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence 66778888999999999999 776 9999999999999986544 2333333 448899999999 999999999
Q ss_pred CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEE
Q 013717 317 CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTA 394 (437)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~ 394 (437)
.||.|++||+++++ ....+.+|...+.++.++++ +|++++.||.|++||+.+++ .+..+..|...|.+++|
T Consensus 206 ~dg~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~ 278 (814)
T 3mkq_A 206 DDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK---VEKTLNVGLERSWCIAT 278 (814)
T ss_dssp TTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS---EEEEECCSSSSEEEEEE
T ss_pred CCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEEeecCCCcEEEEEE
Confidence 99999999998765 34456678889998888765 99999999999999999876 78888999999999999
Q ss_pred EccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 395 VTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 395 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
+|++.. ++++++.|+.+.+|++..+.+
T Consensus 279 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 279 HPTGRK----NYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp CTTCGG----GEEEEEETTEEEEEECSCCSC
T ss_pred ccCCCc----eEEEEEeCCCEEEEEcCCCCc
Confidence 999853 445566678899999876543
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-34 Score=263.50 Aligned_cols=283 Identities=13% Similarity=0.101 Sum_probs=231.7
Q ss_pred cccceeeccccccccccCCCceeEEecCCCcc-eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeee
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLC-INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSI 132 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~-~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~ 132 (437)
+..++.+.|....+++.+.|+.|.+|+..... .....+ +|...|.+++|+ +++|++++.| .|++||+.+++....
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 34578899999999999999999999997653 366666 999999999999 8999999999 999999988654444
Q ss_pred eccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717 133 NTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE 210 (437)
Q Consensus 133 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (437)
..+ ..|...|.+++|+++. |++++.||.|++||++.++....... ....
T Consensus 90 ~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--------------------------~~~~ 140 (372)
T 1k8k_C 90 LVI---LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH--------------------------IKKP 140 (372)
T ss_dssp EEC---CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE--------------------------ECTT
T ss_pred EEe---ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee--------------------------eecc
Confidence 433 4689999999999765 99999999999999987653211111 1135
Q ss_pred CCCcEEEEEeCC--CeEEEEECCCcEEEEEC------------------CCcceEEEeecccccEEEEEEecCCe-EEEE
Q 013717 211 HGDAVTGLAVNN--GLIYSVSWDKSLKIWRA------------------SDLRCLESIKAHEDAVNAVAVSAGGT-VYTG 269 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~ 269 (437)
|...|.+++|++ .++++++.||.|++||+ ..++.+..+..|...|.+++|+|++. |+++
T Consensus 141 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE
Confidence 889999999998 79999999999999995 46788888888999999999999998 9999
Q ss_pred eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCC--Cccc---------------
Q 013717 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED--SANH--------------- 332 (437)
Q Consensus 270 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~--------------- 332 (437)
+.||.|++||++.. +.+..+..|...|.+++|+|++++|++| .|+.|++|+++. +...
T Consensus 221 ~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 221 SHDSTVCLADADKK----MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp ETTTEEEEEEGGGT----TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred eCCCEEEEEECCCC----ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 99999999988654 3677788899999999999999988887 899999999987 3100
Q ss_pred -------------eEEe------eee-cccccceEEEEee---C---CEEEEEeCCCcEEEeeCCCCC
Q 013717 333 -------------MVVT------GAL-RGHGKAILCLINV---A---GLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 333 -------------~~~~------~~~-~~~~~~i~~~~~~---~---~~l~~~~~dg~i~iwd~~~~~ 374 (437)
.... ..+ .+|...|.++++. + .+|++|+.||.|++||+.+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 0000 222 4899999999744 3 699999999999999987644
No 80
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.4e-34 Score=285.20 Aligned_cols=316 Identities=16% Similarity=0.228 Sum_probs=255.2
Q ss_pred cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN 133 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~ 133 (437)
....+.++|..+.+++++.||.|.+|+.... .....+ +|..+|.+++|+ +++|++|+.| .|++||+.+++ ...
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--~~~ 91 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--KVV 91 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--EEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEE
Confidence 4467899999999999999999999998764 455566 999999999999 8999999999 99999999853 344
Q ss_pred ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
.+ .+|...|.+++|+++. |++++.||.|++||+.++... ...+.+|
T Consensus 92 ~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~-----------------------------~~~~~~~ 139 (814)
T 3mkq_A 92 DF---EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-----------------------------EQTFEGH 139 (814)
T ss_dssp EE---ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE-----------------------------EEEEECC
T ss_pred EE---ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE-----------------------------EEEEcCC
Confidence 44 4699999999999775 999999999999999865211 1223468
Q ss_pred CCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeeccc-ccEEEEEEec--CCe-EEEEeCCCeEEEecCCCCc
Q 013717 212 GDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHE-DAVNAVAVSA--GGT-VYTGSADRKIRVWAKPFNE 284 (437)
Q Consensus 212 ~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~--~~~-l~~~~~dg~v~iwd~~~~~ 284 (437)
...|.+++|+| ..+++++.||.|++||+.+++....+..+. ..+.+++|+| ++. +++++.||.|++||+...
T Consensus 140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~- 218 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK- 218 (814)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-
T ss_pred CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-
Confidence 99999999987 689999999999999999888877776544 8899999999 887 999999999999988654
Q ss_pred ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeC
Q 013717 285 KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSA 361 (437)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~ 361 (437)
..+..+.+|...|.+++|+|++++|++++.||.|++||+.+++ ....+..|...+.+++++++ .+++++.
T Consensus 219 ---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 219 ---SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK----VEKTLNVGLERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp ---EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS----EEEEECCSSSSEEEEEECTTCGGGEEEEEE
T ss_pred ---cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----EEEEeecCCCcEEEEEEccCCCceEEEEEe
Confidence 4677788899999999999999999999999999999998775 44456677889999998866 2344555
Q ss_pred CCcEEEeeCCCCCCee----------------------------------------eeeeecCCCCCeeEEEEEccCCCC
Q 013717 362 DRTVRIWQRGSDGRFG----------------------------------------CLAVLEGHTKPVKSLTAVTEEGQN 401 (437)
Q Consensus 362 dg~i~iwd~~~~~~~~----------------------------------------~~~~~~~h~~~v~~l~~~~~~~~~ 401 (437)
++.+.+|++....... ....+..+...+.+++|+|++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-- 369 (814)
T 3mkq_A 292 DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR-- 369 (814)
T ss_dssp TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS--
T ss_pred CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCC--
Confidence 6678888876532100 0112234556789999999874
Q ss_pred ceEEEEEecCCCcEEEEeecc
Q 013717 402 GVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 402 ~~~~l~s~~~dg~i~iw~~~~ 422 (437)
++++++ ||.+.+|++..
T Consensus 370 ---~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 370 ---FVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp ---EEEEEE-TTEEEEEETTT
T ss_pred ---EEEEec-CCEEEEEECcc
Confidence 677776 88899998654
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.6e-34 Score=282.85 Aligned_cols=274 Identities=24% Similarity=0.339 Sum_probs=216.9
Q ss_pred cceeecccc-ccccccCCCceeEEecCCCc----ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee
Q 013717 60 LSLQTLPSV-PSLQKLSPDETINFSSASHL----CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT 130 (437)
Q Consensus 60 ~~~~~~~~~-~~~~s~s~dg~i~~~~~~~~----~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~ 130 (437)
.++.+.|.. ..+++++.|++|++|+.... ......+ +|...|.+++|+ +++|++|+.| .|+|||+.++ .
T Consensus 386 ~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~--~ 463 (694)
T 3dm0_A 386 TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--V 463 (694)
T ss_dssp EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--E
T ss_pred EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC--c
Confidence 456666654 57999999999999998643 2345566 999999999999 8999999999 9999999985 3
Q ss_pred eeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717 131 SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW 208 (437)
Q Consensus 131 ~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (437)
....+ .+|...|.+++|+++. |++++.|++|++||.............
T Consensus 464 ~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~--------------------------- 513 (694)
T 3dm0_A 464 STRRF---VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG--------------------------- 513 (694)
T ss_dssp EEEEE---ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSST---------------------------
T ss_pred ceeEE---eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCC---------------------------
Confidence 34444 5799999999999765 999999999999998654322111110
Q ss_pred ecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC
Q 013717 209 IEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN 283 (437)
Q Consensus 209 ~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~ 283 (437)
.+|...|.+++|++ ..+++++.|+.|++||++++++...+.+|...|++++|+|++. |++|+.||.|++||++..
T Consensus 514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 25889999999988 4799999999999999999999999999999999999999998 999999999999998765
Q ss_pred cccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee---------------cccccceEE
Q 013717 284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL---------------RGHGKAILC 348 (437)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~~~~~i~~ 348 (437)
. .+..+. +...|.+++|+|++.+|++++ ++.|++||+++++....+.... ..+...+.+
T Consensus 594 ~----~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 594 K----KLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp E----EEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred c----eEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 3 344444 456899999999998887775 5569999998875433332111 011123566
Q ss_pred EEeeC--CEEEEEeCCCcEEEeeCC
Q 013717 349 LINVA--GLLMSGSADRTVRIWQRG 371 (437)
Q Consensus 349 ~~~~~--~~l~~~~~dg~i~iwd~~ 371 (437)
+.|++ .+|++|+.||.|+||++.
T Consensus 668 l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEcCCCCEEEEEcCCCeEEEEecc
Confidence 77765 499999999999999986
No 82
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.2e-34 Score=259.14 Aligned_cols=277 Identities=12% Similarity=0.126 Sum_probs=224.8
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce-eeeeccccCCCCcccEEEEEEeC--C-eEEEEecCCeEEEEe
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW-TSINTFNDNDSSSGSVKSVTFCD--G-KIFTAHQDCKIRVWQ 168 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~~~dg~i~iwd 168 (437)
+|.+.|.+++|+ +++|++++.| .|++||+..+.. .....+ .+|...|.+++|++ . .|++++.||.|++||
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS---LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE---EECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee---eecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 899999999999 8999999999 999999988641 112222 36899999999984 4 599999999999999
Q ss_pred C-CCCcccccccccCccccceeeecCCCCeeEEeeccceeeec--CCCcEEEEEeCC-CeEEEEECCCcEEEEECCC---
Q 013717 169 L-TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE--HGDAVTGLAVNN-GLIYSVSWDKSLKIWRASD--- 241 (437)
Q Consensus 169 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~--- 241 (437)
+ .+++.. .+.+ |...|.+++|++ +++++++.|+.|++||+++
T Consensus 86 ~~~~~~~~-------------------------------~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 86 LIGSPSFQ-------------------------------ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp SSSSSSEE-------------------------------ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT
T ss_pred eccCCceE-------------------------------eccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc
Confidence 9 766421 1235 889999999997 9999999999999999987
Q ss_pred ------cceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCC-CcccceeeEEeeCccccEEEEEEcc-CCCEEE
Q 013717 242 ------LRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPF-NEKRHALIATLEKHKSAVNALALSD-DGTVLF 313 (437)
Q Consensus 242 ------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 313 (437)
++++..+. +...|.+++|+|++ +++++.|+.|++||++. ... ........+...+.+++|+| ++++|+
T Consensus 135 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~l~ 210 (342)
T 1yfq_A 135 GVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDD--NGTIEESGLKYQIRDVALLPKEQEGYA 210 (342)
T ss_dssp BCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTC--CCEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred ccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccc--cceeeecCCCCceeEEEECCCCCCEEE
Confidence 77666666 88899999999888 99999999999999975 322 12334456788999999999 999999
Q ss_pred EEeCCCcEEEEECCCC--ccceEEeeeeccc---------ccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeee
Q 013717 314 SGACDRSILVWDREDS--ANHMVVTGALRGH---------GKAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLA 380 (437)
Q Consensus 314 ~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~---------~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~ 380 (437)
+++.||.|++|+++.. .........+..| ...|.++.+++ .+|++++.||.|++||+.+++ ++.
T Consensus 211 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~ 287 (342)
T 1yfq_A 211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK---KIK 287 (342)
T ss_dssp EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE---EEE
T ss_pred EEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh---Hhh
Confidence 9999999999999876 1001122223444 34898988875 499999999999999999866 788
Q ss_pred eecCC-CCCeeEEEEEccCCCCceEEEEEecCCCc-EEEEee
Q 013717 381 VLEGH-TKPVKSLTAVTEEGQNGVVSVFSGSLDGE-IRAWQV 420 (437)
Q Consensus 381 ~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~dg~-i~iw~~ 420 (437)
.+.+| ..+|.+++ |++. +|++++.||. .+.|..
T Consensus 288 ~~~~~h~~~v~~~~--~~~~-----~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 288 NFAKFNEDSVVKIA--CSDN-----ILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ECCCCSSSEEEEEE--ECSS-----EEEEEEECTHHHHCSSS
T ss_pred hhhcccCCCceEec--CCCC-----eEEEEecCCcccccccc
Confidence 89998 99999998 7664 8999999999 666654
No 83
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.6e-35 Score=262.92 Aligned_cols=292 Identities=14% Similarity=0.168 Sum_probs=209.9
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce--eeeeccccCCCCcccEEEEEEeC---Ce-EEEEecCCeEEE
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW--TSINTFNDNDSSSGSVKSVTFCD---GK-IFTAHQDCKIRV 166 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~---~~-l~s~~~dg~i~i 166 (437)
+|.+.|++++|+ +++|++|+.| .|++||+.++.. +....+ .+|...|.+++|++ +. |++++.||.|++
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW---RAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE---ECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee---ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 999999999999 8999999999 999999986422 334444 57999999999986 33 999999999999
Q ss_pred EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCc
Q 013717 167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDL 242 (437)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~ 242 (437)
||+++++....... ......+..|...|.+++|++ .++++++.||.|++||++++
T Consensus 86 wd~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 86 WEEDPDQEECSGRR---------------------WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP 144 (351)
T ss_dssp EEECTTSCTTSSCS---------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST
T ss_pred EecCCCcccccccC---------------------cceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh
Confidence 99987643211100 001123346899999999987 58999999999999999887
Q ss_pred ceEEEee-------------cccccEEEEEEecC---Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEE
Q 013717 243 RCLESIK-------------AHEDAVNAVAVSAG---GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305 (437)
Q Consensus 243 ~~~~~~~-------------~~~~~v~~~~~~~~---~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (437)
+.+..+. .+...+.+++|+|+ +. +++++.++.+.+|+.... ....+..+.+|...|.+++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~~~~ 222 (351)
T 3f3f_A 145 SDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISW 222 (351)
T ss_dssp TCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS--CEEEEEECCCCCSCEEEEEE
T ss_pred HHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC--ceeeeeecCCCCcceeEEEE
Confidence 6544332 57788999999997 66 999999999988876433 23346677889999999999
Q ss_pred ccCC----CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEE----EeCCCcEEEeeCCCCCC
Q 013717 306 SDDG----TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMS----GSADRTVRIWQRGSDGR 375 (437)
Q Consensus 306 ~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~----~~~dg~i~iwd~~~~~~ 375 (437)
+|++ ++|++++.||.|++||++.+........ +.......... ...+.. +.....+.+|+...
T Consensus 223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 295 (351)
T 3f3f_A 223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE----SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ--- 295 (351)
T ss_dssp CCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------------CCSEE---
T ss_pred CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC----cccceeccCCCcccccccccccccccceeeeeccccc---
Confidence 9998 8999999999999999986543322211 11111112111 112222 23344455555443
Q ss_pred eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 376 FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 376 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
..++..+.+|...|++++|+|++. +|++++.||.|++|+++.++.
T Consensus 296 ~~~~~~~~~h~~~v~~~~~s~~~~-----~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 296 VELLSEHDDHNGEVWSVSWNLTGT-----ILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp EEEEEEECTTSSCEEEEEECSSSC-----CEEEEETTSCEEEEEECTTSC
T ss_pred ccEEEEEecccccEEEEEEcCCCC-----EEEEecCCCcEEEEecCcCcc
Confidence 358888999999999999999884 799999999999999998753
No 84
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=253.01 Aligned_cols=268 Identities=21% Similarity=0.297 Sum_probs=223.2
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc-eeeeecc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT-WTSINTF 135 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~-~~~~~~~ 135 (437)
..+.+ |....+++++.||.|++|+............|...|.+++|+ +++|++++.| .|++|++.... .+....+
T Consensus 22 ~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~ 100 (313)
T 3odt_A 22 RDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTL 100 (313)
T ss_dssp EEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE
T ss_pred EEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccch
Confidence 46677 888899999999999999996644443333999999999999 8999999999 99999998732 1223333
Q ss_pred ccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717 136 NDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV 215 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (437)
.+|...|.++.|.++.+++++.||.|++|| .++.. ..+..|...+
T Consensus 101 ---~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~------------------------------~~~~~~~~~v 145 (313)
T 3odt_A 101 ---IGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLV------------------------------YNLQAHNASV 145 (313)
T ss_dssp ---CCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEE------------------------------EEEECCSSCE
T ss_pred ---hhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEE------------------------------EecccCCCce
Confidence 679999999999888899999999999999 22211 1224588999
Q ss_pred EEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeec-ccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeE
Q 013717 216 TGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIA 291 (437)
Q Consensus 216 ~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 291 (437)
.++.+.+ +++++++.||.|++|| ..+....+.. +...|.+++|+|++.+++++.||.|++||++.. +.+.
T Consensus 146 ~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~----~~~~ 219 (313)
T 3odt_A 146 WDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG----DVLR 219 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC----CEEE
T ss_pred eEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch----hhhh
Confidence 9999854 8999999999999999 4556667765 899999999999999999999999999998754 4677
Q ss_pred EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeC
Q 013717 292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQR 370 (437)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~ 370 (437)
.+..|...|.+++|+|++ .|++++.||.|++||+++++ ....+..|...+.++.++++ .+++++.||.|++||+
T Consensus 220 ~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 220 TYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS----LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC----EEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEES
T ss_pred hhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc----eeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeC
Confidence 788899999999999999 68899999999999998876 44445678889999998866 5778999999999999
Q ss_pred CCCC
Q 013717 371 GSDG 374 (437)
Q Consensus 371 ~~~~ 374 (437)
++++
T Consensus 295 ~~~~ 298 (313)
T 3odt_A 295 EKSR 298 (313)
T ss_dssp CGGG
T ss_pred CCCc
Confidence 8755
No 85
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=270.05 Aligned_cols=306 Identities=13% Similarity=0.239 Sum_probs=217.8
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce---------eeeeccccCCCCc------------ccEEEEEEe
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW---------TSINTFNDNDSSS------------GSVKSVTFC 151 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~---------~~~~~~~~~~~h~------------~~v~~l~~~ 151 (437)
.|.+.|.+++|+ +++||+|+.| .|+|||+.++.. +....+ .+|. ..|.+++|+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~---~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF---QSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE---ECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc---ccccccccccccccccCceEEEEEc
Confidence 678999999999 8999999999 999999987531 123344 5687 889999999
Q ss_pred CC----eEEEEecCCeEEEEeCCCCcccccccccCccccce----------eeecCCCCeeEEeeccc-eeeecCCCcEE
Q 013717 152 DG----KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRL----------LRFMLPNSYVTVRRHKK-KLWIEHGDAVT 216 (437)
Q Consensus 152 ~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~v~ 216 (437)
++ .|++++.|++|++||+.+++.......+....... .....+.. ..+..... ....+|...|.
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD-LMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEE-EEEEEEEEEEECSCCSSCCC
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchh-eeeeccceEEeccCCCcceE
Confidence 65 39999999999999998654322111111100000 00000011 11111222 23367999999
Q ss_pred EEEeCC--CeEEEEECCCcEEEEECCC-cceEEE-------eecccccEEEEEEecCC-e-EEEEeCCCeEEEecCCCCc
Q 013717 217 GLAVNN--GLIYSVSWDKSLKIWRASD-LRCLES-------IKAHEDAVNAVAVSAGG-T-VYTGSADRKIRVWAKPFNE 284 (437)
Q Consensus 217 ~~~~~~--~~l~~~~~dg~i~iwd~~~-~~~~~~-------~~~~~~~v~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~ 284 (437)
+++|++ .+|++| .||.|++||+++ ++.+.. +..|...|.+++|+|++ . |++|+.||.|++||++...
T Consensus 182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 999998 788888 899999999984 444442 45788999999999998 5 9999999999999998655
Q ss_pred ccceeeEEeeCccc------------cEEEEEEccCCCEEEEEeCCCcEEEEECCC-CccceEEeeeecccccc------
Q 013717 285 KRHALIATLEKHKS------------AVNALALSDDGTVLFSGACDRSILVWDRED-SANHMVVTGALRGHGKA------ 345 (437)
Q Consensus 285 ~~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~------ 345 (437)
........+..|.. .|.+++|+|+|++|++++. +.|++||++. ++.. ..+.+|...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~----~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV----ETYQVHEYLRSKLCS 335 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS----CCEESCGGGTTTHHH
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc----ceeeccccccccccc
Confidence 32223566666665 8999999999999999998 9999999986 4432 233444321
Q ss_pred ---------e--EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeec-------------------------------
Q 013717 346 ---------I--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLE------------------------------- 383 (437)
Q Consensus 346 ---------i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------- 383 (437)
+ .++.+++.+|++|+.||.|++||+.+++. + .+.
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD---I-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVD 411 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE---E-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGG
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc---e-eeeecccccccccccCCccccccCCccccccccc
Confidence 1 34455566999999999999999998762 1 222
Q ss_pred --CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 384 --GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 384 --~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
.+...|..++|+|+++ +|++++.++ +++|.-+
T Consensus 412 ~~~~~~~i~~~~~~p~~~-----~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 412 SLDFNKKILHTAWHPKEN-----IIAVATTNN-LYIFQDK 445 (447)
T ss_dssp GCCTTSCCCEEEECSSSS-----EEEEECSSC-EEEEECC
T ss_pred ccccCCceeEEEECCCCC-----EEEEEecce-eeeeccc
Confidence 2346789999999985 688887765 8888643
No 86
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-34 Score=258.80 Aligned_cols=253 Identities=20% Similarity=0.270 Sum_probs=208.4
Q ss_pred eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC----eEEEEecCC
Q 013717 91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG----KIFTAHQDC 162 (437)
Q Consensus 91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~~~dg 162 (437)
++..+ +|.+.|.+++|+ +++|++|+.| .|+|||+..+..+....+ .+|...|.+++|+++ .|++++.||
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe---cCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 34566 999999999999 8999999999 999999986556666665 679999999999843 399999999
Q ss_pred eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEE
Q 013717 163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWR 238 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd 238 (437)
.|++||+.+++.... ..+..|...|.+++|++ .++++++.||.|++||
T Consensus 80 ~v~iwd~~~~~~~~~----------------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d 131 (379)
T 3jrp_A 80 KVLIWKEENGRWSQI----------------------------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131 (379)
T ss_dssp CEEEEEEETTEEEEE----------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred EEEEEEcCCCceeEe----------------------------eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence 999999987652111 12235889999999987 5899999999999999
Q ss_pred CCCcc--eEEEeecccccEEEEEEec-------------CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEE
Q 013717 239 ASDLR--CLESIKAHEDAVNAVAVSA-------------GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA 302 (437)
Q Consensus 239 ~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~ 302 (437)
+.+.. ....+..|...|.+++|+| ++. +++++.||.|++||++...........+.+|...|.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~ 211 (379)
T 3jrp_A 132 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 211 (379)
T ss_dssp CCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred cCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeE
Confidence 98873 4455668999999999999 566 9999999999999998766666677788899999999
Q ss_pred EEEccC---CCEEEEEeCCCcEEEEECCCCccceE-EeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCC
Q 013717 303 LALSDD---GTVLFSGACDRSILVWDREDSANHMV-VTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 303 ~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 374 (437)
++|+|+ +++|++++.||.|++||++.+..... .......|...+.+++|+++ +|++++.||.|++|++....
T Consensus 212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 999999 89999999999999999987643322 22233457888988888755 99999999999999988544
No 87
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.4e-34 Score=264.42 Aligned_cols=287 Identities=17% Similarity=0.193 Sum_probs=224.6
Q ss_pred cceeeccccccccccCCCceeEEecCCCcc-----eeeeec-CccCCeEEEEee-C--------CEEEEEecC-eEEEEe
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLC-----INSVQL-GHKLPIGCIAVH-H--------NFLYAASSH-EINVYD 123 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~-----~~~~~~-~h~~~V~~l~~~-~--------~~l~s~~~d-~v~vwd 123 (437)
.++.+.| ..+++++.||.|.+|+..... .+...+ +|...|.+++|+ . ++|++++.| .|++||
T Consensus 20 ~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~ 97 (397)
T 1sq9_A 20 FSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR 97 (397)
T ss_dssp EEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEE
T ss_pred EEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEE
Confidence 4677777 889999999999999997655 345555 999999999998 4 799999999 999999
Q ss_pred CCCCceee---eeccccCCCC-----cccEEEEEEe----CC--e-EEEEecCCeEEEEeCCC------CcccccccccC
Q 013717 124 RTGTTWTS---INTFNDNDSS-----SGSVKSVTFC----DG--K-IFTAHQDCKIRVWQLTP------TKHHKLKTTLP 182 (437)
Q Consensus 124 ~~~~~~~~---~~~~~~~~~h-----~~~v~~l~~~----~~--~-l~s~~~dg~i~iwd~~~------~~~~~~~~~~~ 182 (437)
+.++.... ...+ ..| ...|.+++|+ ++ . |++++.||.|++||+.+ ++.......
T Consensus 98 ~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-- 172 (397)
T 1sq9_A 98 ITREDETKKVIFEKL---DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPT-- 172 (397)
T ss_dssp EEECTTTCCEEEEEE---CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCE--
T ss_pred ccCCcccccccceee---cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCc--
Confidence 98754200 3333 446 6999999999 55 4 88999999999999987 432220000
Q ss_pred ccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeec---c---cccE
Q 013717 183 TVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKA---H---EDAV 255 (437)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~v 255 (437)
. .+.. .......|...|.+++|++ .++++++.||.|++||+++++.+..+.. | ...|
T Consensus 173 -------------~--~~~~-~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 173 -------------L--ELQG-TVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp -------------E--EEEE-EECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred -------------c--eeee-eeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence 0 0000 0000124888999999998 5899999999999999999999999988 8 9999
Q ss_pred EEEEEecCCe-EEEEeCC---CeEEEecCCCCcccceeeEEeeC-------------ccccEEEEEEccCCCEEEEEeCC
Q 013717 256 NAVAVSAGGT-VYTGSAD---RKIRVWAKPFNEKRHALIATLEK-------------HKSAVNALALSDDGTVLFSGACD 318 (437)
Q Consensus 256 ~~~~~~~~~~-l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~d 318 (437)
.+++|+|++. |++++.| |.|++||++.. +.+..+.. |...|.+++|+|++++|++++.|
T Consensus 237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 312 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFG----ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 312 (397)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTC----CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred ceEEECCCCCEEEEEecCCCCceEEEEECCCC----cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence 9999999998 9999999 99999998754 35667777 89999999999999999999999
Q ss_pred CcEEEEECCCCccceEEeeee--ccc---------------ccceEEEEeeCC------------EEEEEeCCCcEEEee
Q 013717 319 RSILVWDREDSANHMVVTGAL--RGH---------------GKAILCLINVAG------------LLMSGSADRTVRIWQ 369 (437)
Q Consensus 319 g~i~i~d~~~~~~~~~~~~~~--~~~---------------~~~i~~~~~~~~------------~l~~~~~dg~i~iwd 369 (437)
|.|++||+++++....+.... .+| ...|.+++++++ +|++++.||.|++|+
T Consensus 313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 999999998876433332000 055 888999988755 899999999999999
Q ss_pred CCCC
Q 013717 370 RGSD 373 (437)
Q Consensus 370 ~~~~ 373 (437)
+.++
T Consensus 393 ~~~g 396 (397)
T 1sq9_A 393 EAGG 396 (397)
T ss_dssp EEC-
T ss_pred cCCC
Confidence 9864
No 88
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7.1e-34 Score=257.40 Aligned_cols=280 Identities=11% Similarity=0.079 Sum_probs=215.3
Q ss_pred cccceeeccccccccccCCC-------ceeEEecCCCcce---------eeeec-CccCCeEEEEeeCCEEEEEe-----
Q 013717 58 SNLSLQTLPSVPSLQKLSPD-------ETINFSSASHLCI---------NSVQL-GHKLPIGCIAVHHNFLYAAS----- 115 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~d-------g~i~~~~~~~~~~---------~~~~~-~h~~~V~~l~~~~~~l~s~~----- 115 (437)
+..++.|.|+...+++++.+ ..|++|+.+.... ....+ +|...|.+++++++.+++|.
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~ 95 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENST 95 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHH
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCcc
Confidence 34588999999999988653 3599999854322 12345 89999999999988888764
Q ss_pred ------cC-eEEEEeCCCCc--eeeeec--cccCCCCcccEEEEEEeCCe--EE--EEecCCeEEEEeCCCCcccccccc
Q 013717 116 ------SH-EINVYDRTGTT--WTSINT--FNDNDSSSGSVKSVTFCDGK--IF--TAHQDCKIRVWQLTPTKHHKLKTT 180 (437)
Q Consensus 116 ------~d-~v~vwd~~~~~--~~~~~~--~~~~~~h~~~v~~l~~~~~~--l~--s~~~dg~i~iwd~~~~~~~~~~~~ 180 (437)
.| .+++|++.... ...... +.....+...+.+++|+|++ ++ +++.|++|++||+++++....+
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-- 173 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-- 173 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--
T ss_pred EEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--
Confidence 46 89999987642 122211 11223456679999999876 44 4557999999999987654333
Q ss_pred cCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe--ecccccEE
Q 013717 181 LPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI--KAHEDAVN 256 (437)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~ 256 (437)
.|...|.+++|+| +++++++ ++.+++|+..+++.+... ..|...|.
T Consensus 174 -----------------------------~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 174 -----------------------------ETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLS 223 (365)
T ss_dssp -----------------------------ECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred -----------------------------CCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEE
Confidence 3778899999999 6777776 556778887777765443 46888999
Q ss_pred EEEEecCCe-EEEEeCCC----eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717 257 AVAVSAGGT-VYTGSADR----KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN 331 (437)
Q Consensus 257 ~~~~~~~~~-l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (437)
+++|+|++. +++++.|+ .+++|++............+.+|...|++++|+|||++|++|+.|++|+|||+++++.
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM 303 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE
Confidence 999999999 88888887 6888987655444444567788999999999999999999999999999999987753
Q ss_pred ceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCC
Q 013717 332 HMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~ 372 (437)
.. ..+.+|...|.+++|+++ +|++|+.|++|+|||+..
T Consensus 304 ~~---~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 304 SK---IFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EE---EETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EE---EecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 22 225789999999999866 999999999999999965
No 89
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-33 Score=251.73 Aligned_cols=281 Identities=16% Similarity=0.169 Sum_probs=233.1
Q ss_pred cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN 133 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~ 133 (437)
...++.+.|....+++.+.||.|.+|+.... .....+ +|...|.+++|+ +++|++++.| .|++||+.+++ ...
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~ 110 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ--CVA 110 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--EEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEE
Confidence 3357899999999999999999999998764 445556 999999999999 8999999999 99999999853 444
Q ss_pred ccccCCCCcccEEEEEEeCCe--EEEEecC-----CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccce
Q 013717 134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQD-----CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKK 206 (437)
Q Consensus 134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (437)
.+ .|...|.+++|+++. +++++.+ |.|++||+............. .....
T Consensus 111 ~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~-------------------~~~~~ 167 (369)
T 3zwl_B 111 TW----KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS-------------------EEPIH 167 (369)
T ss_dssp EE----ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC-------------------SSCSE
T ss_pred Ee----ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc-------------------cceee
Confidence 44 278899999999765 8888888 999999998765433222111 11222
Q ss_pred eeecCCC--cEEEEEeCC--CeEEEEECCCcEEEEECCC-cceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecC
Q 013717 207 LWIEHGD--AVTGLAVNN--GLIYSVSWDKSLKIWRASD-LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAK 280 (437)
Q Consensus 207 ~~~~~~~--~v~~~~~~~--~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~ 280 (437)
.+..|.. .+.+++|++ +++++++.||.|++||+++ .+.+..+..|...|.+++|+|++. |++++.||.|++||+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 168 KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence 3345665 999999998 8999999999999999998 788888889999999999999998 999999999999998
Q ss_pred CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC--------------cEEEEECCCCccceEEeeeecccccce
Q 013717 281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR--------------SILVWDREDSANHMVVTGALRGHGKAI 346 (437)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~i 346 (437)
+... .+..+. +...+..++|+|+++++++++.++ .+++||+.+++ ....+.+|...|
T Consensus 248 ~~~~----~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~v 318 (369)
T 3zwl_B 248 STLQ----VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE----EIGRVQGHFGPL 318 (369)
T ss_dssp TTCC----EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC----EEEEEECCSSCE
T ss_pred CCCc----eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc----chhheecccCcE
Confidence 7543 445554 778899999999999999999988 89999998776 444567799999
Q ss_pred EEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717 347 LCLINVAG--LLMSGSADRTVRIWQRGSD 373 (437)
Q Consensus 347 ~~~~~~~~--~l~~~~~dg~i~iwd~~~~ 373 (437)
.+++++++ +|++++.||.|++|+++.+
T Consensus 319 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 319 NTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 99998755 9999999999999999864
No 90
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=260.83 Aligned_cols=250 Identities=18% Similarity=0.254 Sum_probs=209.8
Q ss_pred CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.+|...|.+++|+++. |++++.||.|++||+....... ...+.+|...|.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~----------------------------~~~~~~h~~~v~ 59 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL----------------------------IDTLTGHEGPVW 59 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE----------------------------EEEECCCSSCEE
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCccee----------------------------eeEecCCCCcEE
Confidence 5799999999999765 9999999999999997432111 122346999999
Q ss_pred EEEeCC----CeEEEEECCCcEEEEECCCcc--eEEEeecccccEEEEEEecC--Ce-EEEEeCCCeEEEecCCCCcccc
Q 013717 217 GLAVNN----GLIYSVSWDKSLKIWRASDLR--CLESIKAHEDAVNAVAVSAG--GT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 217 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
+++|++ .+|++++.||.|++||+.+++ .+..+..|...|.+++|+|+ +. +++++.||.|++||++....
T Consensus 60 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-- 137 (379)
T 3jrp_A 60 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-- 137 (379)
T ss_dssp EEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC--
T ss_pred EEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc--
Confidence 999973 899999999999999999987 67777789999999999998 77 99999999999999976532
Q ss_pred eeeEEeeCccccEEEEEEcc-------------CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC-
Q 013717 288 ALIATLEKHKSAVNALALSD-------------DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA- 353 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 353 (437)
.....+..|...|.+++|+| ++.+|++++.||.|++||++.+.........+.+|...|.++++++
T Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 217 (379)
T 3jrp_A 138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 217 (379)
T ss_dssp CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCC
Confidence 23345678999999999999 6999999999999999999987776667777889999999999874
Q ss_pred ----CEEEEEeCCCcEEEeeCCCCCCee--eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 354 ----GLLMSGSADRTVRIWQRGSDGRFG--CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 354 ----~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
.+|++++.||.|++||+..+.... .+.....|...|++++|+|++. +|++++.||.|++|++..+
T Consensus 218 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-----~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 218 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-----VLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-----CEEEEESSSSEEEEEEEET
T ss_pred CCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC-----EEEEecCCCcEEEEeCCCC
Confidence 489999999999999999865322 2233345889999999999985 6999999999999999853
No 91
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.3e-33 Score=258.51 Aligned_cols=276 Identities=22% Similarity=0.299 Sum_probs=216.2
Q ss_pred cccccCCCceeEEecCCCccee-eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCccc
Q 013717 70 SLQKLSPDETINFSSASHLCIN-SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGS 144 (437)
Q Consensus 70 ~~~s~s~dg~i~~~~~~~~~~~-~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~ 144 (437)
.+++++.|++|++|+....... ...+ +|...|+||+|+ |++||+|+.| .|+|||+.++ +.+..+ .+|...
T Consensus 117 n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--~~~~~~---~~h~~~ 191 (420)
T 4gga_A 117 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNM---TSHSAR 191 (420)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEE---CCCSSC
T ss_pred CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC--cEEEEE---eCCCCc
Confidence 4566788999999999764332 2334 788999999999 8999999999 9999999985 445554 679999
Q ss_pred EEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--
Q 013717 145 VKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-- 222 (437)
Q Consensus 145 v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 222 (437)
+.++.+++..+++|+.|+.+++||....... ...+.+|...+..+.+.+
T Consensus 192 v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~-----------------------------~~~~~~h~~~~~~~~~~~~g 242 (420)
T 4gga_A 192 VGSLSWNSYILSSGSRSGHIHHHDVRVAEHH-----------------------------VATLSGHSQEVCGLRWAPDG 242 (420)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTSSSCE-----------------------------EEEEECCSSCEEEEEECTTS
T ss_pred eEEEeeCCCEEEEEeCCCceeEeeeccccee-----------------------------eEEecccccceeeeeecCCC
Confidence 9999999988999999999999998765321 122357999999999998
Q ss_pred CeEEEEECCCcEEEEECCCcc----eEEEeecccccEEEEEEecCCe--EEE--EeCCCeEEEecCCCCcccceeeEEee
Q 013717 223 GLIYSVSWDKSLKIWRASDLR----CLESIKAHEDAVNAVAVSAGGT--VYT--GSADRKIRVWAKPFNEKRHALIATLE 294 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~--l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~ 294 (437)
.++++++.|+.+++||..+++ .+.....|...|.+++|+|++. +++ |+.|+.|++||+.++. ....+.
T Consensus 243 ~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~----~~~~~~ 318 (420)
T 4gga_A 243 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----CLSAVD 318 (420)
T ss_dssp SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE----EEEEEE
T ss_pred CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc----cceeec
Confidence 899999999999999998765 3456667899999999999776 444 4579999999987653 455554
Q ss_pred CccccEEEEEEccCCCEEEEEe--CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeC
Q 013717 295 KHKSAVNALALSDDGTVLFSGA--CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQR 370 (437)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~ 370 (437)
+...+.++.|+|+++.+++++ .|+.|+|||+.+++ ....+.+|...|.+++++++ +|++|+.|++|+|||+
T Consensus 319 -~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~----~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 319 -AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA----KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp -CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred -cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 456789999999999988765 79999999998876 45567889999999998755 9999999999999999
Q ss_pred CCCCCeeeeeeecCCCCCeeE
Q 013717 371 GSDGRFGCLAVLEGHTKPVKS 391 (437)
Q Consensus 371 ~~~~~~~~~~~~~~h~~~v~~ 391 (437)
.... +......+...+..
T Consensus 394 ~~~~---~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 394 FELD---PARRREREKASAAK 411 (420)
T ss_dssp SCSS---CC------------
T ss_pred CCCC---ccchhhhccCCccc
Confidence 8654 34444444444333
No 92
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.2e-34 Score=262.54 Aligned_cols=286 Identities=16% Similarity=0.267 Sum_probs=219.9
Q ss_pred eEEEEeeCCE---EEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC-Ce--EEEEecCCeEEEEeCCCCc
Q 013717 101 IGCIAVHHNF---LYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD-GK--IFTAHQDCKIRVWQLTPTK 173 (437)
Q Consensus 101 V~~l~~~~~~---l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~--l~s~~~dg~i~iwd~~~~~ 173 (437)
...+++++++ +++++.+ .|+||++... .+....+....+|.+.|.+++|++ +. |++|+.||+|++||+.++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~-~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKT-GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCC-EECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccC-CCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 3456777443 3346777 9999999663 122233333468999999999997 44 9999999999999998874
Q ss_pred ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEe--
Q 013717 174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESI-- 248 (437)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~-- 248 (437)
...... .....+.+|...|.+++|++ .+|++++.||.|++||+++++.+..+
T Consensus 116 ~~~~~~-----------------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 172 (402)
T 2aq5_A 116 LVLPLR-----------------------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172 (402)
T ss_dssp CSSCBC-----------------------SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred CccccC-----------------------CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence 322111 11233457999999999998 48999999999999999999999999
Q ss_pred ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe-eCcccc-EEEEEEccCCCEEEEE---eCCCcEE
Q 013717 249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL-EKHKSA-VNALALSDDGTVLFSG---ACDRSIL 322 (437)
Q Consensus 249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~dg~i~ 322 (437)
..|...|.+++|+|++. |++++.||.|++||++... .+..+ ..|... +.++.|+|++++|++| +.|+.|+
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT----VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE----EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc----eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 78999999999999998 9999999999999987543 55566 567665 8999999999999999 7999999
Q ss_pred EEECCCCccceEEeeeecccccceEEEEeeCC--EEE-EEeCCCcEEEeeCCCCCC-eeeeeeecCCCCCeeEEEEEccC
Q 013717 323 VWDREDSANHMVVTGALRGHGKAILCLINVAG--LLM-SGSADRTVRIWQRGSDGR-FGCLAVLEGHTKPVKSLTAVTEE 398 (437)
Q Consensus 323 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~-~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~ 398 (437)
+||+++.+...... ...|...+.++.++++ +|+ +|+.||.|++||+.+++. ...+..+. |..+|.+++|+|++
T Consensus 249 iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~ 325 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQ--ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKR 325 (402)
T ss_dssp EEETTBCSSCSEEE--ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGG
T ss_pred EEcCccccCCceEE--eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEeccc
Confidence 99998865433222 2245667888887755 665 566899999999998763 23333333 67999999999987
Q ss_pred CCCceEEEEEecCCCcEEEEeeccCC
Q 013717 399 GQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 399 ~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
. +++ +.|+.+++|++..+.
T Consensus 326 ~-----~~~--s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 326 G-----LEV--NKCEIARFYKLHERK 344 (402)
T ss_dssp G-----SCG--GGTEEEEEEEEETTE
T ss_pred c-----cce--ecceeEEEEEcCCCc
Confidence 4 343 457799999998753
No 93
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.9e-34 Score=261.85 Aligned_cols=280 Identities=19% Similarity=0.260 Sum_probs=224.8
Q ss_pred ccceeeccc----cccccccCCCceeEEecCCCcceeeee--c---CccCCeEEEEee------CCEEEEEecC-eEEEE
Q 013717 59 NLSLQTLPS----VPSLQKLSPDETINFSSASHLCINSVQ--L---GHKLPIGCIAVH------HNFLYAASSH-EINVY 122 (437)
Q Consensus 59 ~~~~~~~~~----~~~~~s~s~dg~i~~~~~~~~~~~~~~--~---~h~~~V~~l~~~------~~~l~s~~~d-~v~vw 122 (437)
..++.+.|. ...+++.+.++.|.+|+.......... + .|...|.+++|+ +++|++|+.| .|++|
T Consensus 21 v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~ 100 (366)
T 3k26_A 21 LFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 100 (366)
T ss_dssp EEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEE
T ss_pred eEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEE
Confidence 357788883 556777788889999999754332222 2 377889999998 2489999999 99999
Q ss_pred eCCCCceeeeeccccCCCCcccEEEEEEeC-Ce--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeE
Q 013717 123 DRTGTTWTSINTFNDNDSSSGSVKSVTFCD-GK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVT 199 (437)
Q Consensus 123 d~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (437)
|+.++ +.+..+ .+|...|.+++|++ +. |++++.||.|++||+++++....+..+
T Consensus 101 d~~~~--~~~~~~---~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------ 157 (366)
T 3k26_A 101 NPITM--QCIKHY---VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV------------------ 157 (366)
T ss_dssp CTTTC--CEEEEE---ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST------------------
T ss_pred Echhc--eEeeee---cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc------------------
Confidence 99985 344444 46999999999997 43 999999999999999987655443211
Q ss_pred EeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee----------------------------
Q 013717 200 VRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK---------------------------- 249 (437)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------------- 249 (437)
.+|...|.+++|++ ++|++++.||.|++||+++++....+.
T Consensus 158 ---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 158 ---------EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp ---------TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred ---------ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 25899999999998 899999999999999999876544333
Q ss_pred cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcc----------cceeeEEeeCccccEEEEEEccC--CCEEEEEeC
Q 013717 250 AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEK----------RHALIATLEKHKSAVNALALSDD--GTVLFSGAC 317 (437)
Q Consensus 250 ~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~ 317 (437)
.|...|.+++|+ ...+++++.||.|++||+..... ....+..+..|...|.+++|+|+ +++|++|+.
T Consensus 229 ~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 229 IHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp SCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred CCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence 388999999999 44599999999999999875432 12456778889999999999999 999999999
Q ss_pred CCcEEEEECCCCccceEEeeeeccc--ccceEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717 318 DRSILVWDREDSANHMVVTGALRGH--GKAILCLINVAG--LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~ 371 (437)
||.|++||+.+++........+.+| ...|.++.|+++ +|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999876554444556666 789999998755 99999999999999985
No 94
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.8e-34 Score=257.33 Aligned_cols=289 Identities=16% Similarity=0.205 Sum_probs=226.0
Q ss_pred ceeeeec-CccCCeEEEEee-C----CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe
Q 013717 89 CINSVQL-GHKLPIGCIAVH-H----NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH 159 (437)
Q Consensus 89 ~~~~~~~-~h~~~V~~l~~~-~----~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~ 159 (437)
...+..+ +|.+.|++++|+ . ++|++|+.| .|++||+.+........+ .+|...|.+++|+++. |++++
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ---QMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE---EECSSCEEEEEECTTSSEEEEEE
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe---ccccCCEEEEEECcCCCEEEEEc
Confidence 4455566 999999999999 3 799999999 999999987323332333 4699999999999765 99999
Q ss_pred cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe--CC--CeEEEEECCCcEE
Q 013717 160 QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV--NN--GLIYSVSWDKSLK 235 (437)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~--~~l~~~~~dg~i~ 235 (437)
.||.|++||+.+++.... ..|...|.+++| ++ .++++++.||.|+
T Consensus 106 ~dg~v~iwd~~~~~~~~~-------------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 154 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQI-------------------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK 154 (368)
T ss_dssp TTSEEEEEETTTTEEEEE-------------------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred CCCcEEEEEcCCCCceee-------------------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEE
Confidence 999999999998764332 359999999999 66 6799999999999
Q ss_pred EEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCE----
Q 013717 236 IWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTV---- 311 (437)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---- 311 (437)
+||+++++.+..+..+. .+.++.+.++ .+++++.++.+++|+++......... ...+...+.++.+.++...
T Consensus 155 vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 230 (368)
T 3mmy_A 155 FWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRI--ESPLKHQHRCVAIFKDKQNKPTG 230 (368)
T ss_dssp EECSSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEEC--CCSCSSCEEEEEEEECTTSCEEE
T ss_pred EEECCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhc--cccccCCCceEEEcccCCCCCCe
Confidence 99999999988887554 6777777643 58888999999999997654322222 2234455666666665544
Q ss_pred EEEEeCCCcEEEEECCCCccceEEeeeeccccc------------ceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCee
Q 013717 312 LFSGACDRSILVWDREDSANHMVVTGALRGHGK------------AILCLINVAG--LLMSGSADRTVRIWQRGSDGRFG 377 (437)
Q Consensus 312 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~ 377 (437)
+++++.||.|++||++..... .....+.+|.. .|.+++++++ +|++|+.||.|++||+.+++
T Consensus 231 ~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~--- 306 (368)
T 3mmy_A 231 FALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART--- 306 (368)
T ss_dssp EEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE---
T ss_pred EEEecCCCcEEEEecCCCCcc-ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc---
Confidence 999999999999999876321 12223344544 6888888765 99999999999999999866
Q ss_pred eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 378 CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 378 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
++..+.+|..+|++++|+|++. +|++++.|+..+.|++-..+
T Consensus 307 ~~~~~~~~~~~v~~~~~s~~g~-----~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 307 KLKTSEQLDQPISACCFNHNGN-----IFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp EEEECCCCSSCEEEEEECTTSS-----CEEEEECCCSTTCGGGCCTT
T ss_pred EEEEecCCCCCceEEEECCCCC-----eEEEEecccccccccccCCC
Confidence 7889999999999999999985 79999999877777765443
No 95
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2e-33 Score=256.92 Aligned_cols=271 Identities=20% Similarity=0.173 Sum_probs=210.4
Q ss_pred cceeecccc-ccccccCCCceeEEecCCCcceeeee-c-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeee
Q 013717 60 LSLQTLPSV-PSLQKLSPDETINFSSASHLCINSVQ-L-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSI 132 (437)
Q Consensus 60 ~~~~~~~~~-~~~~s~s~dg~i~~~~~~~~~~~~~~-~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~ 132 (437)
.++.+.|.. ..+++++.||.|.+|+.......... . +|...|.+++|+ +++|++++.| .|++||+.+...
T Consensus 77 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--- 153 (383)
T 3ei3_B 77 TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI--- 153 (383)
T ss_dssp EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE---
T ss_pred EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce---
Confidence 578899988 89999999999999999754443333 3 899999999998 4899999999 999999997433
Q ss_pred eccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717 133 NTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE 210 (437)
Q Consensus 133 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (437)
..+.....|...|.+++|+++. |++++.|+.|++||++ ++... .+.+
T Consensus 154 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~------------------------------~~~~ 202 (383)
T 3ei3_B 154 QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIF------------------------------KEKL 202 (383)
T ss_dssp EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEE------------------------------EEEC
T ss_pred EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEE------------------------------Eecc
Confidence 3333335677899999999765 9999999999999994 32211 2246
Q ss_pred CCCcEEEEEeCC--C-eEEEEECCCcEEEEECCC----cceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCC
Q 013717 211 HGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASD----LRCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKP 281 (437)
Q Consensus 211 ~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~ 281 (437)
|...|.+++|++ . ++++++.|+.|++||+++ ++++..+ .|...|.+++|+| ++. |++++.|+.|++||++
T Consensus 203 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 999999999999 4 899999999999999987 5666666 6999999999999 988 9999999999999997
Q ss_pred CCcccceeeEEe---eCc----------cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc--cccce
Q 013717 282 FNEKRHALIATL---EKH----------KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG--HGKAI 346 (437)
Q Consensus 282 ~~~~~~~~~~~~---~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~i 346 (437)
............ ..| ...+..++|+|+|++ +++.||.|++||+.+++... .+.+ |...+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~----~l~~~~~~~~~ 355 (383)
T 3ei3_B 282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH----QLRDPNAAGII 355 (383)
T ss_dssp BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE----EECBTTBCSCC
T ss_pred CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceee----eecCCCCCceE
Confidence 654322221100 011 234556778888877 78899999999998876433 3333 45566
Q ss_pred EEEEee--CCEEEEEeCCCcEEEeeCCC
Q 013717 347 LCLINV--AGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 347 ~~~~~~--~~~l~~~~~dg~i~iwd~~~ 372 (437)
.+++|+ +.+|++|+ ||.|+|||+++
T Consensus 356 ~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 356 SLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEEecCccEEEEec-CCcEEEEecCC
Confidence 665665 45899997 99999999875
No 96
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=254.17 Aligned_cols=286 Identities=12% Similarity=0.153 Sum_probs=220.4
Q ss_pred cccceeeccccccc-cccCC---CceeEEecCCCcceeeeec-CccCCeEEEEee-C----CEEEEEecC-eEEEEeCCC
Q 013717 58 SNLSLQTLPSVPSL-QKLSP---DETINFSSASHLCINSVQL-GHKLPIGCIAVH-H----NFLYAASSH-EINVYDRTG 126 (437)
Q Consensus 58 ~~~~~~~~~~~~~~-~s~s~---dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~-~----~~l~s~~~d-~v~vwd~~~ 126 (437)
...++.+.|....+ ++.+. ||.|.+|+........... +|...|.+++|+ . ++|++|+.| .|++||+.+
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 99 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA 99 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC
Confidence 33578899977544 45555 9999999998765444444 999999999998 3 899999999 999999998
Q ss_pred CceeeeeccccCCCCcccEEEEEEe------CC--eEEEEecCCeEEEEeCCCCc-ccccccccCccccceeeecCCCCe
Q 013717 127 TTWTSINTFNDNDSSSGSVKSVTFC------DG--KIFTAHQDCKIRVWQLTPTK-HHKLKTTLPTVNDRLLRFMLPNSY 197 (437)
Q Consensus 127 ~~~~~~~~~~~~~~h~~~v~~l~~~------~~--~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 197 (437)
+. .....+ .+|...|.++.|. ++ .|++++.||.|++||+.+++ ....+....
T Consensus 100 ~~-~~~~~~---~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--------------- 160 (357)
T 3i2n_A 100 PE-MPVYSV---KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ--------------- 160 (357)
T ss_dssp CS-SCSEEE---CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT---------------
T ss_pred CC-ccEEEE---EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC---------------
Confidence 53 133333 5799999999764 34 39999999999999998775 222222110
Q ss_pred eEEeeccceeeecCCCcEEEEE----eCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEec---CCe-EE
Q 013717 198 VTVRRHKKKLWIEHGDAVTGLA----VNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA---GGT-VY 267 (437)
Q Consensus 198 ~~~~~~~~~~~~~~~~~v~~~~----~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~-l~ 267 (437)
..+...+.+++ |++ .++++++.||.|++||+++++.... ..|...|.+++|+| ++. ++
T Consensus 161 -----------~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~ 228 (357)
T 3i2n_A 161 -----------GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLV 228 (357)
T ss_dssp -----------TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEE
T ss_pred -----------CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEE
Confidence 01244788888 455 8999999999999999999887554 46889999999999 777 99
Q ss_pred EEeCCCeEEEecCCCCccccee-eEEeeCccccEEEEEEccCCC-EEEEEeCCCcEEEEECCCCccce------------
Q 013717 268 TGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNALALSDDGT-VLFSGACDRSILVWDREDSANHM------------ 333 (437)
Q Consensus 268 ~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~------------ 333 (437)
+++.||.|++||++........ ...+..|...|.+++|+|+++ +|++++.||.|++||++.+....
T Consensus 229 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~ 308 (357)
T 3i2n_A 229 ATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA 308 (357)
T ss_dssp EEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCC
T ss_pred EECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccc
Confidence 9999999999998754332221 224458999999999999998 89999999999999998654331
Q ss_pred ---EEeeeecccccceEEEEeeCC--EEE-EEeCCCcEEEeeCCCCC
Q 013717 334 ---VVTGALRGHGKAILCLINVAG--LLM-SGSADRTVRIWQRGSDG 374 (437)
Q Consensus 334 ---~~~~~~~~~~~~i~~~~~~~~--~l~-~~~~dg~i~iwd~~~~~ 374 (437)
.....+.+|...|.+++|+++ +|+ +++.||.|++||+.+.+
T Consensus 309 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 309 GSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 345567889999999998865 666 89999999999998743
No 97
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.6e-34 Score=266.14 Aligned_cols=273 Identities=19% Similarity=0.169 Sum_probs=202.9
Q ss_pred cceeecccc-ccccccCCCceeEEecCCCcc-eeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeee
Q 013717 60 LSLQTLPSV-PSLQKLSPDETINFSSASHLC-INSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSI 132 (437)
Q Consensus 60 ~~~~~~~~~-~~~~s~s~dg~i~~~~~~~~~-~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~ 132 (437)
.++.++|.. ..+++++.||+|.+|+..... .....+ +|.+.|++|+|+ +++|++|+.| +|++||++++.....
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 202 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF 202 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEE
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEE
Confidence 478999965 578899999999999996543 444455 999999999997 6899999999 999999988543333
Q ss_pred eccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717 133 NTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE 210 (437)
Q Consensus 133 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (437)
.. ...+...+.+++|+++. |++|+.||.|++||++... ... +.+
T Consensus 203 ~~---~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~------------------------------~~~ 248 (435)
T 4e54_B 203 AS---SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWN------------------------------LRM 248 (435)
T ss_dssp EC---CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCC------------------------------SBC
T ss_pred ec---cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEE------------------------------Eec
Confidence 32 24566678999999765 9999999999999987532 111 135
Q ss_pred CCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEe---ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC
Q 013717 211 HGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESI---KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN 283 (437)
Q Consensus 211 ~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~ 283 (437)
|...|.+++|+| .++++|+.|+.|++||+++.+....+ .+|...|++++|+|++. |++++.||.|++||+...
T Consensus 249 h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 999999999997 57889999999999999887654433 47899999999999998 999999999999998765
Q ss_pred cccceeeEEeeCcc------ccEEEEEEccCCCEEEEEe------------CCCcEEEEECCCCccceEEeeeecccccc
Q 013717 284 EKRHALIATLEKHK------SAVNALALSDDGTVLFSGA------------CDRSILVWDREDSANHMVVTGALRGHGKA 345 (437)
Q Consensus 284 ~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 345 (437)
.. ...+..|. ..+....|+|++.+++++. .++.|++||..+++....+ ..+|...
T Consensus 329 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l---~~~~~~~ 401 (435)
T 4e54_B 329 DC----PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL---YDPESSG 401 (435)
T ss_dssp SS----EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE---CCSSCCC
T ss_pred cc----ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE---eCCCCCc
Confidence 42 22222222 1233445666666655553 3467999999887643322 3467777
Q ss_pred eEEE-Eee--CCEEEEEeCCCcEEEeeCCCCC
Q 013717 346 ILCL-INV--AGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 346 i~~~-~~~--~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
|.++ +|+ +.+|++|+ |+.|+||+++.++
T Consensus 402 v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 402 ISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp CCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 7665 354 55888765 7899999999865
No 98
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.2e-32 Score=248.65 Aligned_cols=284 Identities=11% Similarity=0.083 Sum_probs=207.4
Q ss_pred eeeec-CccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEe--CCe-EEEEecCCeE
Q 013717 91 NSVQL-GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DGK-IFTAHQDCKI 164 (437)
Q Consensus 91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~-l~s~~~dg~i 164 (437)
++..+ +|...|.+++|+ |++|++|+.+.++|||.+.+. ..... +...+..+++. ++. +++++.|++|
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVA--HIMSQ-----EMRHLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEE--EEEEE-----ECSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcc--eeeee-----ecCCeEEEEEcCCCCEEEEEECCccEE
Confidence 34455 899999999999 899999988888999998843 33222 11235566665 444 4678888999
Q ss_pred EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc-c
Q 013717 165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-R 243 (437)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~ 243 (437)
++||..+++....+. +...|.++.++++.++++. |+.|++||+.++ +
T Consensus 84 ~iWd~~~~~~~~~~~-------------------------------~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~ 131 (355)
T 3vu4_A 84 HIWDDVKKQDVSRIK-------------------------------VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWK 131 (355)
T ss_dssp EEEETTTTEEEEEEE-------------------------------CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCC
T ss_pred EEEECCCCcEEEEEE-------------------------------CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCce
Confidence 999999886544332 6678999999997776654 789999999988 6
Q ss_pred eEEEeecccccEEEEEEecCCeEEE--EeCCCeEEEecCCCCcc-----------ccee-eEEeeCccccEEEEEEccCC
Q 013717 244 CLESIKAHEDAVNAVAVSAGGTVYT--GSADRKIRVWAKPFNEK-----------RHAL-IATLEKHKSAVNALALSDDG 309 (437)
Q Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~l~~--~~~dg~v~iwd~~~~~~-----------~~~~-~~~~~~~~~~i~~~~~~~~~ 309 (437)
.+..+.. ....+++++ ..+++ |+.||.|++||+..... ...+ +..+.+|...|.+++|+|+|
T Consensus 132 ~~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g 207 (355)
T 3vu4_A 132 RITDDIR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS 207 (355)
T ss_dssp BSSCCEE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred eeEEecc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence 6666654 344556666 45554 68899999999975320 0012 66788999999999999999
Q ss_pred CEEEEEeCCCc-EEEEECCCCccceEEeeeec-c-cccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeee--
Q 013717 310 TVLFSGACDRS-ILVWDREDSANHMVVTGALR-G-HGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVL-- 382 (437)
Q Consensus 310 ~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~-- 382 (437)
++|++|+.||+ |++||+++++.. ..+. + |...|.+++|+++ +|++++.|++|++||++..... ....+
T Consensus 208 ~~l~s~s~d~~~v~iwd~~~~~~~----~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~-~~~~~~~ 282 (355)
T 3vu4_A 208 DMVATCSQDGTIIRVFKTEDGVLV----REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDN-KRHALKG 282 (355)
T ss_dssp SEEEEEETTCSEEEEEETTTCCEE----EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCC-CSEETTT
T ss_pred CEEEEEeCCCCEEEEEECCCCcEE----EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCc-ccccccc
Confidence 99999999998 999999987643 3344 4 8899999998865 9999999999999999765311 11111
Q ss_pred -------------------cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717 383 -------------------EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS 427 (437)
Q Consensus 383 -------------------~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 427 (437)
..+......++|++++ .+|++++.||.+++|++..+....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~-----~~l~~~~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES-----SLVVVWPHTRMIETFKVVFDDEME 341 (355)
T ss_dssp TEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS-----EEEEEETTTTEEEEEEEEEETTTT
T ss_pred eeeccccccccceeEEEeccCCCCCceEEEEeCCC-----CEEEEEeCCCeEEEEEEEcCCCCc
Confidence 1122334778999988 489999999999999998876544
No 99
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-34 Score=267.21 Aligned_cols=268 Identities=13% Similarity=0.092 Sum_probs=199.5
Q ss_pred cceeeeecCccCCeEEEEee--C---------CEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--
Q 013717 88 LCINSVQLGHKLPIGCIAVH--H---------NFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-- 154 (437)
Q Consensus 88 ~~~~~~~~~h~~~V~~l~~~--~---------~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 154 (437)
...+...+.+.+.|.+|+|+ + ++||+|+.+... . ..+++.
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----~----------------------~~~~~~~~ 175 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----E----------------------PLNEHLEM 175 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----C----------------------ccchhhhh
Confidence 34444455678999999998 5 799998865110 0 013333
Q ss_pred EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--------CeEE
Q 013717 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--------GLIY 226 (437)
Q Consensus 155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~ 226 (437)
+++++.|++|+|||+.+++..... ...+.+|.+.|.+++|+| .+|+
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~--------------------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LA 229 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVK--------------------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLS 229 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEE--------------------------EEEEEECCCSEEEEEECSSCCCSSSSCEEE
T ss_pred hccCCCCceEEEEEccCCCCCceE--------------------------EEEEEecCCcEEEEEECCCCCCCCCCceEE
Confidence 889999999999999766421100 012235788999999987 3899
Q ss_pred EEECCCcEEEEECCCcce-----------EEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717 227 SVSWDKSLKIWRASDLRC-----------LESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEK 295 (437)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 295 (437)
+++.||+|++||+.+++. ...+.+|...|++++|++++.|++|+.||+|++||++... .+...+.+
T Consensus 230 s~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~---~~~~~~~~ 306 (524)
T 2j04_B 230 FVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE---VPSFYDQV 306 (524)
T ss_dssp EEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS---SCSEEEEC
T ss_pred EEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC---CceEEeec
Confidence 999999999999987642 2356788999999999988779999999999999997542 23455778
Q ss_pred ccccEEEE--EEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccc--cceEEEEeeC--CEEEEEeCCCcEEEe
Q 013717 296 HKSAVNAL--ALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHG--KAILCLINVA--GLLMSGSADRTVRIW 368 (437)
Q Consensus 296 ~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~l~~~~~dg~i~iw 368 (437)
|...|.++ +|+|+| ++|++|+.|++|+|||+++++....+. +|. ..+.+++|++ ..+++++.|++|++|
T Consensus 307 H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~----~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lw 382 (524)
T 2j04_B 307 HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV----SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV 382 (524)
T ss_dssp SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE----EECSCCSCCCEEEETTTTEEEEECSSSEEEEE
T ss_pred ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc----cccccCcccceEeCCCcCeEEEeCCCCcEEEE
Confidence 99999999 578888 899999999999999998765444333 333 2355666665 489999999999999
Q ss_pred eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
|++.+. ++..+.+|.+.|++|+|+|++. +|++|+.||+|++|++...
T Consensus 383 d~~~~~---~~~~l~gH~~~V~sva~Sp~g~-----~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 383 PSRAAF---AVHPLVSRETTITAIGVSRLHP-----MVLAGSADGSLIITNAARR 429 (524)
T ss_dssp ETTCTT---CCEEEEECSSCEEEEECCSSCC-----BCEEEETTTEEECCBSCSS
T ss_pred ECcccc---cceeeecCCCceEEEEeCCCCC-----eEEEEECCCEEEEEechHh
Confidence 999866 6677889999999999999885 7999999999999998654
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2e-32 Score=246.26 Aligned_cols=270 Identities=13% Similarity=0.123 Sum_probs=220.3
Q ss_pred cceeeccccccccccCCCceeEEecCCCcc--eeeeec-CccCCeEEEEee--CC-EEEEEecC-eEEEEeC-CCCceee
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLC--INSVQL-GHKLPIGCIAVH--HN-FLYAASSH-EINVYDR-TGTTWTS 131 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~--~~~~~~-~h~~~V~~l~~~--~~-~l~s~~~d-~v~vwd~-~~~~~~~ 131 (437)
.++.+.|....+++.+.||.|.+|+..... .....+ +|...|.+++|+ ++ +|++|+.| .|++||+ .++..
T Consensus 15 ~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-- 92 (342)
T 1yfq_A 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-- 92 (342)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE--
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce--
Confidence 467889999999999999999999996654 223333 999999999999 88 99999999 9999999 87533
Q ss_pred eeccccCCC--CcccEEEEEEeC-CeEEEEecCCeEEEEeCCC---------CcccccccccCccccceeeecCCCCeeE
Q 013717 132 INTFNDNDS--SSGSVKSVTFCD-GKIFTAHQDCKIRVWQLTP---------TKHHKLKTTLPTVNDRLLRFMLPNSYVT 199 (437)
Q Consensus 132 ~~~~~~~~~--h~~~v~~l~~~~-~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (437)
..+ .+ |...|.+++|++ +.+++++.|+.|++||+.+ ++....+
T Consensus 93 -~~~---~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--------------------- 147 (342)
T 1yfq_A 93 -QAL---TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT--------------------- 147 (342)
T ss_dssp -EEC---BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS---------------------
T ss_pred -Eec---cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEE---------------------
Confidence 222 46 999999999996 3399999999999999875 3222211
Q ss_pred EeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCC-cce--EEEeecccccEEEEEEec-CCe-EEEEeCCCe
Q 013717 200 VRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASD-LRC--LESIKAHEDAVNAVAVSA-GGT-VYTGSADRK 274 (437)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~ 274 (437)
.|...|.+++++++.+++++.|+.|++||+++ +.. ......+...|.+++|+| ++. +++++.||.
T Consensus 148 ----------~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 148 ----------KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp ----------SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred ----------eeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence 27889999999997799999999999999988 543 334446788999999999 888 999999999
Q ss_pred EEEecCCCC--cccceeeEEeeCccc---------cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc-
Q 013717 275 IRVWAKPFN--EKRHALIATLEKHKS---------AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH- 342 (437)
Q Consensus 275 v~iwd~~~~--~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~- 342 (437)
|++|+++.. .........+..|.. .|.+++|+|++++|++++.||.|++||+.+++ ....+.+|
T Consensus 218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~h 293 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK----KIKNFAKFN 293 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE----EEEECCCCS
T ss_pred EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh----Hhhhhhccc
Confidence 999998765 111234556666654 99999999999999999999999999998775 44456777
Q ss_pred ccceEEEEeeCCEEEEEeCCCc-EEEeeC
Q 013717 343 GKAILCLINVAGLLMSGSADRT-VRIWQR 370 (437)
Q Consensus 343 ~~~i~~~~~~~~~l~~~~~dg~-i~iwd~ 370 (437)
...|.+++.++.+|++++.||. .+.|..
T Consensus 294 ~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 294 EDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred CCCceEecCCCCeEEEEecCCcccccccc
Confidence 8999998866779999999998 666654
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.9e-31 Score=237.34 Aligned_cols=267 Identities=22% Similarity=0.295 Sum_probs=214.3
Q ss_pred eeeccccccccccCCCceeEEecCCCccee-eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717 62 LQTLPSVPSLQKLSPDETINFSSASHLCIN-SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFN 136 (437)
Q Consensus 62 ~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~-~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~ 136 (437)
+..++. . +++++.|++|++|+....... ...+ +|...|.+++|+ +++|++|+.| .|++||++++ +.+..+
T Consensus 31 l~WS~~-~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~--~~~~~~- 105 (318)
T 4ggc_A 31 VDWSSG-N-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNM- 105 (318)
T ss_dssp EEECTT-S-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEE-
T ss_pred EEECCC-C-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc--eeEEEe-
Confidence 455544 2 555678999999998764332 2233 789999999999 8999999999 9999999995 444444
Q ss_pred cCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 137 DNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 137 ~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.+|...+.++.+.+..+++++.++.+++|+........ ..+.+|...+.
T Consensus 106 --~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~ 154 (318)
T 4ggc_A 106 --TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV-----------------------------ATLSGHSQEVC 154 (318)
T ss_dssp --ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEE-----------------------------EEEECCSSCEE
T ss_pred --cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeE-----------------------------EEEcCccCceE
Confidence 57999999999999889999999999999987654221 22346899999
Q ss_pred EEEeCC--CeEEEEECCCcEEEEECCCcce----EEEeecccccEEEEEEecCCe----EEEEeCCCeEEEecCCCCccc
Q 013717 217 GLAVNN--GLIYSVSWDKSLKIWRASDLRC----LESIKAHEDAVNAVAVSAGGT----VYTGSADRKIRVWAKPFNEKR 286 (437)
Q Consensus 217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~----l~~~~~dg~v~iwd~~~~~~~ 286 (437)
.+.+.+ .++++++.||.|++||+++++. ......+...|.+++++|++. +++++.++.|++||.....
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-- 232 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-- 232 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC--
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc--
Confidence 999988 8999999999999999988753 344456788999999998775 3466788999999986543
Q ss_pred ceeeEEeeCccccEEEEEEccCCCEEEEEe--CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCC
Q 013717 287 HALIATLEKHKSAVNALALSDDGTVLFSGA--CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSAD 362 (437)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~d 362 (437)
.. ....+...+..+.|+|+++.+++++ .|+.|++||+++++ ....+.+|...|.+++++++ +|++|+.|
T Consensus 233 --~~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~----~~~~l~gH~~~V~~l~~spdg~~l~S~s~D 305 (318)
T 4ggc_A 233 --CL-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA----KVAELKGHTSRVLSLTMSPDGATVASAAAD 305 (318)
T ss_dssp --EE-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred --cc-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence 22 2334677899999999999887755 79999999998876 45567889999999998755 99999999
Q ss_pred CcEEEeeCCCC
Q 013717 363 RTVRIWQRGSD 373 (437)
Q Consensus 363 g~i~iwd~~~~ 373 (437)
|+|+|||+...
T Consensus 306 ~~v~iWd~~~~ 316 (318)
T 4ggc_A 306 ETLRLWRCFEL 316 (318)
T ss_dssp TEEEEECCSCC
T ss_pred CeEEEEECCCC
Confidence 99999999764
No 102
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=250.99 Aligned_cols=313 Identities=16% Similarity=0.216 Sum_probs=212.1
Q ss_pred ccceeecc-ccccccccCCCceeEEecCCCcceeeeec-------------CccCCeEEEEee---CCEEEEEecC-eEE
Q 013717 59 NLSLQTLP-SVPSLQKLSPDETINFSSASHLCINSVQL-------------GHKLPIGCIAVH---HNFLYAASSH-EIN 120 (437)
Q Consensus 59 ~~~~~~~~-~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-------------~h~~~V~~l~~~---~~~l~s~~~d-~v~ 120 (437)
...+.+.| ....+++++.||.|.+|+........... +|...|.+++|+ +++|++++.| .|+
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 125 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence 35788999 89999999999999999996543322221 499999999998 5799999999 999
Q ss_pred EEeCCCCceeeeeccccCCCCcccEEEEEEeC---C--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCC
Q 013717 121 VYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD---G--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPN 195 (437)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (437)
+||+.+++ ....+ .+...+.++.+.+ + .+++++.||.|++||+.+++....+
T Consensus 126 iwd~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~----------------- 182 (408)
T 4a11_B 126 VWDTNTLQ--TADVF----NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL----------------- 182 (408)
T ss_dssp EEETTTTE--EEEEE----ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE-----------------
T ss_pred EeeCCCCc--cceec----cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee-----------------
Confidence 99999853 33333 2678899999984 2 3999999999999999877543322
Q ss_pred CeeEEeeccceeeecCCCcEEEEEeCC--C-eEEEEECCCcEEEEECCCcc-eEEEe---------------ecccccEE
Q 013717 196 SYVTVRRHKKKLWIEHGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLR-CLESI---------------KAHEDAVN 256 (437)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~v~ 256 (437)
..|...|.+++|+| . ++++++.||.|++||+++++ .+..+ ..|...|.
T Consensus 183 -------------~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 183 -------------QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp -------------CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred -------------cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 35899999999998 4 68999999999999998765 34443 46888999
Q ss_pred EEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe-eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceE
Q 013717 257 AVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL-EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMV 334 (437)
Q Consensus 257 ~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 334 (437)
+++|+|++. |++++.||.|++||+............. ......+........+..+++++.|+.|++||+.+++
T Consensus 250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---- 325 (408)
T 4a11_B 250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE---- 325 (408)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC----
T ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc----
Confidence 999999998 9999999999999998654322111111 1111222222233345567777889999999998876
Q ss_pred EeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC
Q 013717 335 VTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD 412 (437)
Q Consensus 335 ~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d 412 (437)
....+.+|...|.+++++++ +|++++.||.|++||+.+.+ .+.....+.. ...+.+... ..+.+++.|
T Consensus 326 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~ 395 (408)
T 4a11_B 326 QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE---PVPDDDETTT---KSQLNPAFE----DAWSSSDEE 395 (408)
T ss_dssp EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------
T ss_pred ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC---ccCCCCceEe---ccccccccc----eeecccCcc
Confidence 44556789999999988865 99999999999999999866 3333332221 123333332 256778889
Q ss_pred CcEEEEeec
Q 013717 413 GEIRAWQVS 421 (437)
Q Consensus 413 g~i~iw~~~ 421 (437)
+.+++|+..
T Consensus 396 ~~~~~W~~~ 404 (408)
T 4a11_B 396 GGTSAWSHP 404 (408)
T ss_dssp ---------
T ss_pred CceeecCCc
Confidence 999999865
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=250.31 Aligned_cols=286 Identities=13% Similarity=0.137 Sum_probs=218.7
Q ss_pred cCCeEEEEee--CCEEEEEecCeEEEEeCCCCce-eeeecccc-------------------------------------
Q 013717 98 KLPIGCIAVH--HNFLYAASSHEINVYDRTGTTW-TSINTFND------------------------------------- 137 (437)
Q Consensus 98 ~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~-~~~~~~~~------------------------------------- 137 (437)
..+|.+++|+ |++|+++..+.|++||+.+++. ..+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 4678999998 8877777655999999988751 11221110
Q ss_pred --------------CCCCcccEEEEEEeCCe--E-EEEecCCeEEEEeCC--CCcccccccccCccccceeeecCCCCee
Q 013717 138 --------------NDSSSGSVKSVTFCDGK--I-FTAHQDCKIRVWQLT--PTKHHKLKTTLPTVNDRLLRFMLPNSYV 198 (437)
Q Consensus 138 --------------~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (437)
..+|.+.|.+++|+++. | ++++.||.|++||+. +++....+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------ 145 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------------ 145 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE------------------
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec------------------
Confidence 01355579999999775 4 788899999999998 6654333221
Q ss_pred EEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEE----EeecccccEEEEEEecC---Ce-EEE
Q 013717 199 TVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLE----SIKAHEDAVNAVAVSAG---GT-VYT 268 (437)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~-l~~ 268 (437)
..|...|.+++|+| .+|++|+.+|.|++|++.+++... .+.+|...|++++|+|+ +. |++
T Consensus 146 ----------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 215 (450)
T 2vdu_B 146 ----------FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT 215 (450)
T ss_dssp ----------EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEE
T ss_pred ----------ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEE
Confidence 14778999999998 899999999999999998876544 67789999999999999 87 999
Q ss_pred EeCCCeEEEecCCCCcccceeeEE-eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee--------
Q 013717 269 GSADRKIRVWAKPFNEKRHALIAT-LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL-------- 339 (437)
Q Consensus 269 ~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------- 339 (437)
|+.|+.|++||++... .+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++....+....
T Consensus 216 ~~~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 290 (450)
T 2vdu_B 216 SDRDEHIKISHYPQCF----IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLND 290 (450)
T ss_dssp EETTSCEEEEEESCTT----CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCT
T ss_pred EcCCCcEEEEECCCCc----eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhh
Confidence 9999999999987543 3444 55799999999999 99999999999999999999876544332110
Q ss_pred -------------cccccceEEEEeeC--CEEEEEe-CCCcEEEeeC--CCCCCeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717 340 -------------RGHGKAILCLINVA--GLLMSGS-ADRTVRIWQR--GSDGRFGCLAVLEGHTKPVKSLTAVTEEGQN 401 (437)
Q Consensus 340 -------------~~~~~~i~~~~~~~--~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 401 (437)
......+.++.+.+ .+|++++ .|+.|++|++ ..+.....+..+..| +.|.+++|+|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~--- 366 (450)
T 2vdu_B 291 QHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE--- 366 (450)
T ss_dssp TSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE---
T ss_pred cccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc---
Confidence 02234567777764 4888888 8999999999 555555678888888 899999999954
Q ss_pred ceEEEEEecC-------CCcEEEEeeccC
Q 013717 402 GVVSVFSGSL-------DGEIRAWQVSVS 423 (437)
Q Consensus 402 ~~~~l~s~~~-------dg~i~iw~~~~~ 423 (437)
++++.+. +..|.+|.++..
T Consensus 367 ---~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 367 ---FQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp ---EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred ---EEEEEecccCCCCCCcceEEEEEEcC
Confidence 5555443 556899988754
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=252.30 Aligned_cols=263 Identities=9% Similarity=0.044 Sum_probs=206.2
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPT 172 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~ 172 (437)
.-...|.+++|+ |+++|+++.| +|+ |.+.+ ..+ .+|...|.+++|+|++ .++.+.+|+.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-----~~l---~gh~~~v~~V~FsPdg-----~~~~~~~~~~~-- 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA-----KDI---NCNSKNLFHVKEFPLE-----FENKLDFELAQ-- 75 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC-----SCC---SSBGGGTEEEEEECCC-----CCCTTTTSCCC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc-----cee---cCCCccEEEEEECCCC-----CcceEEEEeCC--
Confidence 566899999999 9999999999 999 64442 233 5799999999999977 45555454433
Q ss_pred cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec
Q 013717 173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA 250 (437)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 250 (437)
....+. ..|...|.+++|+| ..|++++.||.|++||.+. ++..+.
T Consensus 76 -~~~~~~-----------------------------~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~- 122 (588)
T 2j04_A 76 -QNGLLN-----------------------------SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD- 122 (588)
T ss_dssp -SSCSST-----------------------------TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-
T ss_pred -CceEee-----------------------------cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-
Confidence 222221 13678899999999 8899999999999999644 666666
Q ss_pred ccc-----cEEEEEEecCCe-EEEEeCCCeEEEecCCCCccc---ceeeEEe----eCccccEEEEEEccCCCEEEEEeC
Q 013717 251 HED-----AVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKR---HALIATL----EKHKSAVNALALSDDGTVLFSGAC 317 (437)
Q Consensus 251 ~~~-----~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~---~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~ 317 (437)
|.. .|.+++|+|||+ |++|+.||+|++||+..+... .-.+..+ .+|...|.+++|+||| +++++.
T Consensus 123 ~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~ 200 (588)
T 2j04_A 123 SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS 200 (588)
T ss_dssp CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET
T ss_pred CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC
Confidence 554 599999999999 999999999999998764311 1134555 5677899999999999 888899
Q ss_pred CCcEEEEECCCCccceEEeeee-cccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEE--
Q 013717 318 DRSILVWDREDSANHMVVTGAL-RGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTA-- 394 (437)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~-- 394 (437)
|+.|++||+....... ....+ .+|...|.+++|+++.||+++ +++|++||+.++. ......+|.+.|..++|
T Consensus 201 D~tVrlWd~~~~~~~~-~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~---~~~~~~gh~~~V~~va~~~ 275 (588)
T 2j04_A 201 NNSVFSMTVSASSHQP-VSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYS---ISSLKTGSLENFHIIPLNH 275 (588)
T ss_dssp TCCEEEECCCSSSSCC-CEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTE---EEEEECSCCSCCCEEEETT
T ss_pred CCeEEEEECCCCcccc-ceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCe---EEEEEcCCCceEEEEEeee
Confidence 9999999998765321 11223 368889999999878999887 6999999999755 32333389999999999
Q ss_pred EccCCCCceEEEEEecCCCcEEEEeec
Q 013717 395 VTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 395 ~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
+|++ +.|++++.||+ ++|.++
T Consensus 276 s~d~-----~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 276 EKES-----TILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CSSC-----EEEEECSSCEE-EEEESS
T ss_pred CCCC-----CEEEEEcCCCC-EEEeec
Confidence 8887 58999999999 999975
No 105
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-33 Score=257.93 Aligned_cols=278 Identities=13% Similarity=0.153 Sum_probs=214.3
Q ss_pred ccceeecc-ccccccccCCCceeEEecCCC---cc--eeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCC---C
Q 013717 59 NLSLQTLP-SVPSLQKLSPDETINFSSASH---LC--INSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRT---G 126 (437)
Q Consensus 59 ~~~~~~~~-~~~~~~s~s~dg~i~~~~~~~---~~--~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~---~ 126 (437)
..++.+.| ....+++++.||+|++|+... .. .....++|...|.+++|+ +++|++|+.| .|++||+. .
T Consensus 66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 145 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQ 145 (437)
T ss_dssp EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEE
T ss_pred eEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccC
Confidence 35788999 889999999999999999854 22 223344899999999998 8999999999 99999995 3
Q ss_pred Ccee------eeeccccC-CCCcccEEEEEEe--CCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCC
Q 013717 127 TTWT------SINTFNDN-DSSSGSVKSVTFC--DGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPN 195 (437)
Q Consensus 127 ~~~~------~~~~~~~~-~~h~~~v~~l~~~--~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (437)
++.. .+..+... .++...+.++.+. ++. |++++.||.|++||+++++....+...
T Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------- 211 (437)
T 3gre_A 146 ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS-------------- 211 (437)
T ss_dssp TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC--------------
T ss_pred CceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC--------------
Confidence 2111 11111100 1156778888754 443 999999999999999987654433311
Q ss_pred CeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEe----cCCe-EE
Q 013717 196 SYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVS----AGGT-VY 267 (437)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~----~~~~-l~ 267 (437)
.|...|++++|++ .+|++|+.||.|++||+++++++..+. .|...|.+++++ +++. ++
T Consensus 212 --------------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 212 --------------PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp --------------GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred --------------CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence 1788999999988 899999999999999999999999886 778899999665 4676 99
Q ss_pred EEeCCCeEEEecCCCCcccceeeEEee------------------------C--ccccEEEEEEccCCCEEEEEeCCCcE
Q 013717 268 TGSADRKIRVWAKPFNEKRHALIATLE------------------------K--HKSAVNALALSDDGTVLFSGACDRSI 321 (437)
Q Consensus 268 ~~~~dg~v~iwd~~~~~~~~~~~~~~~------------------------~--~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (437)
+|+.||.|++||++... .+..+. + |...|.+++|+ ++++|++|+.||.|
T Consensus 278 s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i 352 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGH----CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSI 352 (437)
T ss_dssp EESTTEEEEEEETTTTE----EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEE
T ss_pred EEcCCCcEEEEEcCCCc----EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeE
Confidence 99999999999987544 222232 2 66778999999 77899999999999
Q ss_pred EEEECCCCccceEEeee---------------------------------ecccccceEEEEeeCC----EEEEEeCCCc
Q 013717 322 LVWDREDSANHMVVTGA---------------------------------LRGHGKAILCLINVAG----LLMSGSADRT 364 (437)
Q Consensus 322 ~i~d~~~~~~~~~~~~~---------------------------------~~~~~~~i~~~~~~~~----~l~~~~~dg~ 364 (437)
++||+.+++....+... ...|...|.++.+.+. +|++|+.||.
T Consensus 353 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~ 432 (437)
T 3gre_A 353 VMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGL 432 (437)
T ss_dssp EEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred EEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCce
Confidence 99999987655444321 1238889999887654 9999999999
Q ss_pred EEEee
Q 013717 365 VRIWQ 369 (437)
Q Consensus 365 i~iwd 369 (437)
|+||+
T Consensus 433 I~iw~ 437 (437)
T 3gre_A 433 IGIFQ 437 (437)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99995
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.4e-32 Score=251.42 Aligned_cols=279 Identities=15% Similarity=0.169 Sum_probs=216.7
Q ss_pred eeecccccc-ccccCCCceeEEecCCCcce---eeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCce---
Q 013717 62 LQTLPSVPS-LQKLSPDETINFSSASHLCI---NSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTW--- 129 (437)
Q Consensus 62 ~~~~~~~~~-~~s~s~dg~i~~~~~~~~~~---~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~--- 129 (437)
+.+.|.... +++.+.||.|.+|+...... ....+ +|.+.|.+++|+ +++|++|+.| .|++||+.++..
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence 455665554 44578899999999866543 34455 999999999997 7899999999 999999988532
Q ss_pred --eeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecc
Q 013717 130 --TSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHK 204 (437)
Q Consensus 130 --~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (437)
..+..+ .+|...|.+++|+++. |++++.||.|++||+.+++....+..
T Consensus 120 ~~~~~~~~---~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------ 172 (402)
T 2aq5_A 120 LREPVITL---EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP------------------------ 172 (402)
T ss_dssp BCSCSEEE---ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT------------------------
T ss_pred cCCceEEe---cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec------------------------
Confidence 223333 5799999999999663 99999999999999998764433310
Q ss_pred ceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe-eccccc-EEEEEEecCCe-EEEE---eCCCeEE
Q 013717 205 KKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI-KAHEDA-VNAVAVSAGGT-VYTG---SADRKIR 276 (437)
Q Consensus 205 ~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~~~~~~-l~~~---~~dg~v~ 276 (437)
..|...|.+++|++ .+|++++.||.|++||+++++.+..+ ..|.+. +.+++|+|++. +++| +.|+.|+
T Consensus 173 ----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 173 ----DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp ----TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred ----CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 24889999999998 89999999999999999999999888 677765 89999999999 7777 6899999
Q ss_pred EecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEE-EeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCE
Q 013717 277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFS-GACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGL 355 (437)
Q Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 355 (437)
+||++....... .....+...+.+++|+|++++|++ |+.||.|++||+.+++........+. |...+.+++++++.
T Consensus 249 iwd~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~ 325 (402)
T 2aq5_A 249 LWDTKHLEEPLS--LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKR 325 (402)
T ss_dssp EEETTBCSSCSE--EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGG
T ss_pred EEcCccccCCce--EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEeccc
Confidence 999976442111 112246778999999999999864 55799999999998764333333333 66888888888772
Q ss_pred EEEEeCCCcEEEeeCCCCC
Q 013717 356 LMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 356 l~~~~~dg~i~iwd~~~~~ 374 (437)
.+.++.++.+++|++.++.
T Consensus 326 ~~~~s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 326 GLEVNKCEIARFYKLHERK 344 (402)
T ss_dssp GSCGGGTEEEEEEEEETTE
T ss_pred ccceecceeEEEEEcCCCc
Confidence 2233567799999998754
No 107
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=9.9e-32 Score=231.73 Aligned_cols=280 Identities=13% Similarity=0.121 Sum_probs=194.9
Q ss_pred eEEEEee--C---CEEEEEecCeEEEEeCCCC-ceeeeeccccCCCCcccEEEEEEeCCe--EEEEec-C-CeEEEEeCC
Q 013717 101 IGCIAVH--H---NFLYAASSHEINVYDRTGT-TWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ-D-CKIRVWQLT 170 (437)
Q Consensus 101 V~~l~~~--~---~~l~s~~~d~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-d-g~i~iwd~~ 170 (437)
+.++-|- + -.++++++..|++|+..++ .++.+.++ ..|+.+|..+.+.|+. |+.... + ..-.++-+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTW---HFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEE---ECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEE---eccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 4555554 2 3688888889999999885 45777777 6788899999999864 332221 1 111111111
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEE---CCCcEEEEEC-CCcceEE
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVS---WDKSLKIWRA-SDLRCLE 246 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~---~dg~i~iwd~-~~~~~~~ 246 (437)
-...-... ...... .+|...|..+ ....++..+ .|+.|++|++ .+++.+.
T Consensus 119 ~spd~~~~-----------------~~~l~s-------~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~ 172 (356)
T 2w18_A 119 CSSDDESE-----------------KQVLLK-------SGNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE 172 (356)
T ss_dssp C------C-----------------CEEEEE-------EEEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEE
T ss_pred ECCCcccc-----------------ccEEEe-------CCCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCceee
Confidence 00000000 000000 1233334443 445555554 5999999999 5588888
Q ss_pred EeecccccEEEEEEec---CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc---ccEEEEEEccCCCEE-------
Q 013717 247 SIKAHEDAVNAVAVSA---GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK---SAVNALALSDDGTVL------- 312 (437)
Q Consensus 247 ~~~~~~~~v~~~~~~~---~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l------- 312 (437)
.+..|...++.++|++ ++. |++|+.|++|+|||+.++. .++++.+|. ..+.+++|+|+|+++
T Consensus 173 s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk----~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~ 248 (356)
T 2w18_A 173 NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ----LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPC 248 (356)
T ss_dssp EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC----EEEEEECCC---CCCEEEEEEETTEEEEEEC---
T ss_pred eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc----EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCC
Confidence 8889999999999998 556 9999999999999987654 667776543 367788999999876
Q ss_pred -----EEEeCCCcEEEEECCCCccceEEeee-ecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC
Q 013717 313 -----FSGACDRSILVWDREDSANHMVVTGA-LRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT 386 (437)
Q Consensus 313 -----~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 386 (437)
++|+.|++|++||..+++....+... ..+|...+.+..+++.++++|+.|++|+|||+.+++ ++.++.+|.
T Consensus 249 ~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk---~l~tL~gH~ 325 (356)
T 2w18_A 249 AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQ---CTALLPPVS 325 (356)
T ss_dssp ---------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCS---EEEEECCC-
T ss_pred CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCc---EEEEecCCC
Confidence 56788999999999887644333221 246766677777778899999999999999999987 889999998
Q ss_pred CCee-EEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 387 KPVK-SLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 387 ~~v~-~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
..+. .++|+|++. +|++|+.|++|||||+.
T Consensus 326 ~~vvs~vafSPDG~-----~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 326 DQHWSFVKWSGTDS-----HLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp -CCCCEEEECSSSS-----EEEEECTTSCEEEEEEC
T ss_pred CCeEEEEEECCCCC-----EEEEEECCCcEEEecCC
Confidence 8765 589999984 89999999999999963
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.5e-32 Score=250.08 Aligned_cols=258 Identities=19% Similarity=0.280 Sum_probs=205.2
Q ss_pred CCCcccEEEEEEeCC-e--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717 139 DSSSGSVKSVTFCDG-K--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV 215 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~-~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (437)
..|.+.|++++|+++ . |++++.||.|++|++........... .......+.+|...|
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~--------------------~~~~~~~~~~h~~~v 184 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG--------------------ECQPDLRLRGHQKEG 184 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTC--------------------CCCCSEEEECCSSCC
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccc--------------------cCCCcEEecCCCCCe
Confidence 369999999999986 3 88999999999999975321100000 001123345799999
Q ss_pred EEEEeCC--C-eEEEEECCCcEEEEECCCcce-------EEEeecccccEEEEEEecC-Ce-EEEEeCCCeEEEecCCCC
Q 013717 216 TGLAVNN--G-LIYSVSWDKSLKIWRASDLRC-------LESIKAHEDAVNAVAVSAG-GT-VYTGSADRKIRVWAKPFN 283 (437)
Q Consensus 216 ~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~~~~ 283 (437)
.+++|++ . +|++|+.||.|++||+.++.. ...+..|...|.+++|+|+ +. |++++.||.|++||++..
T Consensus 185 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp CCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999998 4 999999999999999987322 3556689999999999994 44 889999999999999854
Q ss_pred cccceeeEEeeCccccEEEEEEccCCC-EEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEE
Q 013717 284 EKRHALIATLEKHKSAVNALALSDDGT-VLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSG 359 (437)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~ 359 (437)
. ....+..+..|...|++++|+|++. +|++|+.||.|++||++.... ....+.+|...|.++.++++ +|+++
T Consensus 265 ~-~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---~~~~~~~h~~~v~~i~~sp~~~~~l~s~ 340 (430)
T 2xyi_A 265 N-TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---KLHSFESHKDEIFQVQWSPHNETILASS 340 (430)
T ss_dssp C-SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred C-CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---CeEEeecCCCCEEEEEECCCCCCEEEEE
Confidence 2 1234556678999999999999987 688999999999999987443 23345678999999999864 79999
Q ss_pred eCCCcEEEeeCCCCCC-----------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 360 SADRTVRIWQRGSDGR-----------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 360 ~~dg~i~iwd~~~~~~-----------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
+.||.|+|||+..... ..++..+.+|...|++++|+|++.. +|++++.||.|++|++....
T Consensus 341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW----IICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT----EEEEEETTSEEEEEEECHHH
T ss_pred eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC----EEEEEECCCCEEEeEccccc
Confidence 9999999999986321 2467788899999999999999864 89999999999999997654
No 109
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-32 Score=267.98 Aligned_cols=251 Identities=20% Similarity=0.278 Sum_probs=205.4
Q ss_pred eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC--e--EEEEecCCeE
Q 013717 93 VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG--K--IFTAHQDCKI 164 (437)
Q Consensus 93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~--l~s~~~dg~i 164 (437)
..+ +|.+.|++++|+ +++|++|+.| .|+|||+..+.......+ .+|.+.|.+++|+++ . |++|+.||.|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l---~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec---cCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 455 999999999999 8999999999 999999986556666666 689999999999854 3 9999999999
Q ss_pred EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECC
Q 013717 165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRAS 240 (437)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~ 240 (437)
++||+.+++.... ..+.+|...|.+++|+| ..+++|+.||.|++||++
T Consensus 80 ~vwd~~~~~~~~~----------------------------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 80 LIWKEENGRWSQI----------------------------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEEEEETTEEEEE----------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEEECCCCccccc----------------------------ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 9999987642111 12246999999999987 589999999999999998
Q ss_pred Ccc--eEEEeecccccEEEEEEec-------------CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEE
Q 013717 241 DLR--CLESIKAHEDAVNAVAVSA-------------GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALA 304 (437)
Q Consensus 241 ~~~--~~~~~~~~~~~v~~~~~~~-------------~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 304 (437)
++. ....+..|...|.+++|+| ++. +++|+.||.|++||++...........+.+|...|.+++
T Consensus 132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (753)
T 3jro_A 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (753)
T ss_dssp SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence 873 3455668999999999999 466 999999999999999877666677788889999999999
Q ss_pred EccC---CCEEEEEeCCCcEEEEECCCCccceE-EeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCC
Q 013717 305 LSDD---GTVLFSGACDRSILVWDREDSANHMV-VTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 305 ~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 374 (437)
|+|+ +++|++++.||.|++||++++..... .......|...+.+++++++ +|++|+.||.|++|++..+.
T Consensus 212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred eccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999 89999999999999999987642211 22233457788887777654 99999999999999998644
No 110
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-32 Score=268.09 Aligned_cols=251 Identities=18% Similarity=0.255 Sum_probs=209.4
Q ss_pred CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.+|.+.|++++|++++ |++|+.||.|++||+..+.... ...+.+|...|.
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~----------------------------~~~l~~h~~~V~ 57 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL----------------------------IDTLTGHEGPVW 57 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEE----------------------------EEEECCCSSCEE
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcc----------------------------ceeccCCcCceE
Confidence 6899999999999765 9999999999999987432111 122346999999
Q ss_pred EEEeCC----CeEEEEECCCcEEEEECCCcc--eEEEeecccccEEEEEEecC--Ce-EEEEeCCCeEEEecCCCCcccc
Q 013717 217 GLAVNN----GLIYSVSWDKSLKIWRASDLR--CLESIKAHEDAVNAVAVSAG--GT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 217 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
+++|++ +++++|+.||.|++||+.+++ .+..+..|...|++++|+|+ +. +++|+.||.|++||++....
T Consensus 58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-- 135 (753)
T 3jro_A 58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-- 135 (753)
T ss_dssp EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC--
T ss_pred EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC--
Confidence 999974 789999999999999999886 66777789999999999998 77 99999999999999976532
Q ss_pred eeeEEeeCccccEEEEEEcc-------------CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC-
Q 013717 288 ALIATLEKHKSAVNALALSD-------------DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA- 353 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 353 (437)
.....+.+|...|.+++|+| ++.+|++|+.||.|++||++++.........+.+|...|.++.+++
T Consensus 136 ~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (753)
T 3jro_A 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (753)
T ss_dssp CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence 23345678999999999999 5899999999999999999987766667777889999999999874
Q ss_pred ----CEEEEEeCCCcEEEeeCCCCCCe--eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 354 ----GLLMSGSADRTVRIWQRGSDGRF--GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 354 ----~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
.+|++|+.||.|++||+.++... ..+.....|...|++++|+|++. +|++++.||.|++|++..+.
T Consensus 216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-----~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-----VLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-----CEEEECSSSCEECCBCCSSS
T ss_pred CCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-----EEEEEcCCCEEEEEecCCCC
Confidence 48999999999999999876421 13344456899999999999885 79999999999999998543
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=6.8e-32 Score=247.12 Aligned_cols=233 Identities=11% Similarity=0.080 Sum_probs=168.4
Q ss_pred EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----------Ce
Q 013717 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----------GL 224 (437)
Q Consensus 155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~ 224 (437)
+++++.|++|++||.++++...... ...+.+|.+.|++++|+| ++
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~-------------------------~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~ 158 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHV-------------------------LGGKSGHHNFVNDIDIADVYSADNRLAEQV 158 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEE-------------------------ECTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred EEEEeCCCcEEEEECCCCccceeee-------------------------ecccCCCCCceEEEEEccccccccCCCCCE
Confidence 8999999999999998775332110 112247999999999974 68
Q ss_pred EEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceee------------
Q 013717 225 IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALI------------ 290 (437)
Q Consensus 225 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~------------ 290 (437)
|++|+.|++|+|||+.++.++..+..|...|.+++|+|++. |++|+.||.|++||++.........
T Consensus 159 las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s 238 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT 238 (393)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred EEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence 99999999999999998888888888999999999999874 9999999999999997654321111
Q ss_pred ---------EEeeCccccEEEEEEc-cCCCEEEEEeCCCcEEEEECCCCccceEEeee---------------ecccccc
Q 013717 291 ---------ATLEKHKSAVNALALS-DDGTVLFSGACDRSILVWDREDSANHMVVTGA---------------LRGHGKA 345 (437)
Q Consensus 291 ---------~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~~~~~ 345 (437)
....+|...+.++.|+ |+|+.|++++.|+++++||+..++....+... ...+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
T 4gq1_A 239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL 318 (393)
T ss_dssp EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCS
T ss_pred cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcc
Confidence 1123567788899987 79999999999999999999865432221110 0011111
Q ss_pred eEEEEee--CC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 346 ILCLINV--AG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 346 i~~~~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
+....+. +. ++++|+.||.|++||+.+++ ++..+.+|..+|.+++|+|++. +|++++.|| +.+|++.
T Consensus 319 ~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~---~~~~~~~~~~~V~svafspdG~-----~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 319 LGACPHPRYMDYFATAHSQHGLIQLINTYEKD---SNSIPIQLGMPIVDFCWHQDGS-----HLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SCCEECSSCTTEEEEEETTTTEEEEEETTCTT---CCEEEEECSSCEEEEEECTTSS-----EEEEEESSE-EEEEEEG
T ss_pred eeEEEccCCCCEEEEEECCCCEEEEEECCCCc---EEEEecCCCCcEEEEEEcCCCC-----EEEEEeCCC-eEEEEEe
Confidence 1111111 22 67788899999999999877 5667778899999999999985 799988665 7777664
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.4e-32 Score=251.39 Aligned_cols=255 Identities=12% Similarity=0.186 Sum_probs=192.6
Q ss_pred CCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC-----
Q 013717 140 SSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG----- 212 (437)
Q Consensus 140 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 212 (437)
.+.+.|.+++|+++. |++|+.||.|++||+.+++......... ......+.+|.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~-------------------~~~~~~~~~h~~~~~~ 86 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE-------------------YNVYSTFQSHEPEFDY 86 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCC-------------------EEEEEEEECCCCEEEG
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc-------------------eeEecccccccccccc
Confidence 478999999999765 9999999999999998765211100000 00112334676
Q ss_pred -------CcEEEEEeCC----CeEEEEECCCcEEEEECCCcceE------------------------------------
Q 013717 213 -------DAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCL------------------------------------ 245 (437)
Q Consensus 213 -------~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~------------------------------------ 245 (437)
..|.+++|++ ..+++++.||.|++||+.+++..
T Consensus 87 ~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (447)
T 3dw8_B 87 LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA 166 (447)
T ss_dssp GGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE
T ss_pred cccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec
Confidence 8899999998 37999999999999999765432
Q ss_pred ---EE-eecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE-------EeeCccccEEEEEEccCC-CEE
Q 013717 246 ---ES-IKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA-------TLEKHKSAVNALALSDDG-TVL 312 (437)
Q Consensus 246 ---~~-~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~~l 312 (437)
.. ..+|...|.+++|+|++. |++| .||.|++||++... ..+. .+..|...|.+++|+|++ ++|
T Consensus 167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 242 (447)
T 3dw8_B 167 SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITD---RSFNIVDIKPANMEELTEVITAAEFHPNSCNTF 242 (447)
T ss_dssp EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEE---EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE
T ss_pred cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC---ceeeeeecccccccccCcceEEEEECCCCCcEE
Confidence 12 247899999999999998 7787 89999999987432 2222 255788999999999998 999
Q ss_pred EEEeCCCcEEEEECCCCccceEEeeeeccccc------------ceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeee
Q 013717 313 FSGACDRSILVWDREDSANHMVVTGALRGHGK------------AILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGC 378 (437)
Q Consensus 313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~ 378 (437)
++|+.||.|++||+++++........+.+|.. .|.++.++++ +|++++. +.|++||++... .+
T Consensus 243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~--~~ 319 (447)
T 3dw8_B 243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN--RP 319 (447)
T ss_dssp EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS--SC
T ss_pred EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc--cc
Confidence 99999999999999987642211233455554 8999988765 8999988 999999998722 36
Q ss_pred eeeecCCCCC---------------eeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 379 LAVLEGHTKP---------------VKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 379 ~~~~~~h~~~---------------v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
+..+.+|... +..++|+|++. +|++|+.||.|++||+.+++.
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-----~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 320 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-----VVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-----EEEEECSTTEEEEEETTTCCE
T ss_pred cceeeccccccccccccccccccccceEEEECCCCC-----EEEEeccCCEEEEEEcCCCcc
Confidence 7788888642 23489999985 799999999999999987753
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.5e-30 Score=234.86 Aligned_cols=274 Identities=13% Similarity=0.074 Sum_probs=216.7
Q ss_pred cccceeecccc---ccccccCCCceeEEecCCC-cceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce
Q 013717 58 SNLSLQTLPSV---PSLQKLSPDETINFSSASH-LCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW 129 (437)
Q Consensus 58 ~~~~~~~~~~~---~~~~s~s~dg~i~~~~~~~-~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~ 129 (437)
....+.+.|.. ..+++++.||.|.+|+... .......+ +|...|.+++|+ +++|++++.| .|++||+.++..
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 120 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 120 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc
Confidence 33578899984 8999999999999999987 44444666 999999999999 8899999999 999999998643
Q ss_pred eeeeccccCCCCcccEEEEEE--eCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717 130 TSINTFNDNDSSSGSVKSVTF--CDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK 205 (437)
Q Consensus 130 ~~~~~~~~~~~h~~~v~~l~~--~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (437)
.. . .+|...|.+++| +++. |++++.||.|++||+++++....+.
T Consensus 121 ~~--~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------------------- 168 (368)
T 3mmy_A 121 IQ--I----AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-------------------------- 168 (368)
T ss_dssp EE--E----EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE--------------------------
T ss_pred ee--e----ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe--------------------------
Confidence 32 2 359999999999 6554 9999999999999999876444332
Q ss_pred eeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCC----e-EEEEeCCCeEEEe
Q 013717 206 KLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGG----T-VYTGSADRKIRVW 278 (437)
Q Consensus 206 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~----~-l~~~~~dg~v~iw 278 (437)
....+.++.+.+..+++++.++.+++|+++......... .+...+.++.+.++. . +++++.||.|++|
T Consensus 169 -----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 169 -----LPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp -----CSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred -----cCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 334678888888899999999999999998765443322 334556666665433 2 9999999999999
Q ss_pred cCCCCcccceeeEEeeCccc------------cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce
Q 013717 279 AKPFNEKRHALIATLEKHKS------------AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI 346 (437)
Q Consensus 279 d~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 346 (437)
|++.... ......+..|.. .|.+++|+|++++|++++.||.|++||+++++ ....+.+|...|
T Consensus 244 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v 318 (368)
T 3mmy_A 244 YINPPNP-AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART----KLKTSEQLDQPI 318 (368)
T ss_dssp ESSCSCH-HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE----EEEECCCCSSCE
T ss_pred ecCCCCc-cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc----EEEEecCCCCCc
Confidence 9975432 134455666665 79999999999999999999999999998765 445567899999
Q ss_pred EEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717 347 LCLINVAG--LLMSGSADRTVRIWQRGSD 373 (437)
Q Consensus 347 ~~~~~~~~--~l~~~~~dg~i~iwd~~~~ 373 (437)
.+++|+++ +|++++.|+..+.|++...
T Consensus 319 ~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 319 SACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred eEEEECCCCCeEEEEecccccccccccCC
Confidence 99998765 9999999987666665443
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.8e-31 Score=244.67 Aligned_cols=250 Identities=20% Similarity=0.297 Sum_probs=202.9
Q ss_pred ecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCC--------CceeeeeccccCCCCcccEEEEEEeCC---eEEEE
Q 013717 94 QLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTG--------TTWTSINTFNDNDSSSGSVKSVTFCDG---KIFTA 158 (437)
Q Consensus 94 ~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~--------~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~ 158 (437)
.++|.+.|++++|+ +++|++++.+ .|++||+.. +.......+ .+|...|.+++|+++ .|++|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL---RGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE---ECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe---cCCCCCeEEEEeCCCCCCeEEEE
Confidence 34999999999999 4689999999 999999975 122333333 579999999999965 49999
Q ss_pred ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEE
Q 013717 159 HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLK 235 (437)
Q Consensus 159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~ 235 (437)
+.||.|++|++..+....... .....+.+|...|.+++|++ .++++++.||.|+
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~-----------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~ 257 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVI-----------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEE-----------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred eCCCeEEEEeCCCCCCCCcee-----------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence 999999999998743211100 01123346999999999987 7899999999999
Q ss_pred EEECCCc---ceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC
Q 013717 236 IWRASDL---RCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT 310 (437)
Q Consensus 236 iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 310 (437)
+||++++ +.+..+..|...|++++|+|++. +++|+.||.|++||++... ..+..+..|...|.+++|+|+++
T Consensus 258 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---~~~~~~~~h~~~v~~i~~sp~~~ 334 (430)
T 2xyi_A 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHNE 334 (430)
T ss_dssp EEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT---SCSEEEECCSSCEEEEEECSSCT
T ss_pred EEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---CCeEEeecCCCCEEEEEECCCCC
Confidence 9999987 57777888999999999999886 8899999999999997533 35667788999999999999985
Q ss_pred -EEEEEeCCCcEEEEECCCCccc----------eEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCC
Q 013717 311 -VLFSGACDRSILVWDREDSANH----------MVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 311 -~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~ 372 (437)
+|++++.||.|++||+...... ..+...+.+|...|.++.|+++ +|++++.||.|+||++..
T Consensus 335 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 335 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 6999999999999999763211 1244556789999999999865 899999999999999875
No 115
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.2e-30 Score=232.15 Aligned_cols=299 Identities=15% Similarity=0.148 Sum_probs=208.9
Q ss_pred ccceeeccccccccccCCCceeEEecCCCcc---eeeeec-CccCCeEEEEee----CCEEEEEecC-eEEEEeCCCCce
Q 013717 59 NLSLQTLPSVPSLQKLSPDETINFSSASHLC---INSVQL-GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTGTTW 129 (437)
Q Consensus 59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~---~~~~~~-~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~~~~ 129 (437)
...+.+.|....+++++.||.|++|+..... .....+ +|...|.+++|+ +++|++|+.| .|++||+..+..
T Consensus 14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~ 93 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE 93 (351)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence 3578899999999999999999999996543 455666 999999999997 6899999999 999999987532
Q ss_pred -------eeeeccccCCCCcccEEEEEEeCC--e--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCee
Q 013717 130 -------TSINTFNDNDSSSGSVKSVTFCDG--K--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYV 198 (437)
Q Consensus 130 -------~~~~~~~~~~~h~~~v~~l~~~~~--~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (437)
+....+ .+|...|.+++|+++ . |++++.||.|++||+.+++...........
T Consensus 94 ~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-------------- 156 (351)
T 3f3f_A 94 ECSGRRWNKLCTL---NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM-------------- 156 (351)
T ss_dssp TTSSCSEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE--------------
T ss_pred cccccCcceeeee---cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc--------------
Confidence 334443 579999999999975 3 999999999999999887654433210000
Q ss_pred EEeeccceeeecCCCcEEEEEeCC-----CeEEEEECCCcEEEEECCCcce--EEEeecccccEEEEEEecCC----e-E
Q 013717 199 TVRRHKKKLWIEHGDAVTGLAVNN-----GLIYSVSWDKSLKIWRASDLRC--LESIKAHEDAVNAVAVSAGG----T-V 266 (437)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~----~-l 266 (437)
.........|...+.+++|+| .++++++.|+.+.+|+...++. +..+.+|...|++++|+|++ . |
T Consensus 157 ---~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l 233 (351)
T 3f3f_A 157 ---KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI 233 (351)
T ss_dssp ---ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred ---cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence 000001125788899999975 7999999999998888877765 66677899999999999997 6 9
Q ss_pred EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC----CCcEEEEECCCCccceEEeeeeccc
Q 013717 267 YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC----DRSILVWDREDSANHMVVTGALRGH 342 (437)
Q Consensus 267 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (437)
++|+.||.|++||++..... .....+..........+....+..+.. ...+.+|+. ........+.+|
T Consensus 234 ~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~h 305 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEKLSP----LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN----LQVELLSEHDDH 305 (351)
T ss_dssp EEEETTSCEEEEEEEECC-------------------------------------------CCS----EEEEEEEEECTT
T ss_pred EEEcCCCeEEEEeCCCCcCc----cccCCcccceeccCCCcccccccccccccccceeeeeccc----ccccEEEEEecc
Confidence 99999999999998754321 112222233334444444444444433 333444443 333456667889
Q ss_pred ccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCC
Q 013717 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH 385 (437)
Q Consensus 343 ~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h 385 (437)
...|.+++++++ +|++|+.||.|++||+.+++.+.++..+..|
T Consensus 306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheeehccc
Confidence 999999998754 9999999999999999998877888877665
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-31 Score=238.82 Aligned_cols=269 Identities=7% Similarity=0.026 Sum_probs=193.0
Q ss_pred CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCcccc
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVND 186 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 186 (437)
+++|++|+.| .|++||+.+++ .+..+ ....|.++.+++. +++++.|++|++|+.............
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~--~~~~~-----~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~----- 114 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSK--TITTI-----TTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTN----- 114 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSS--CEEEE-----EEECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTC-----
T ss_pred CCEEEEECCCCcEEEEECCCCc--EEEEE-----ecCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCc-----
Confidence 7899999999 99999999853 33333 1466778888888 999999999999998743211110000
Q ss_pred ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEe
Q 013717 187 RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVS 261 (437)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~ 261 (437)
.. ......+|...|.+++++| +++++++.||.|++||+++++.+.... .+...|.+++|+
T Consensus 115 ---------~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~ 179 (343)
T 3lrv_A 115 ---------KV------LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH 179 (343)
T ss_dssp ---------CE------EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC
T ss_pred ---------ce------eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC
Confidence 00 0011125778999999987 789999999999999999999876664 455689999999
Q ss_pred cCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee
Q 013717 262 AGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL 339 (437)
Q Consensus 262 ~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (437)
|++. |++|+.||.|++||++.... ....+.. |...|.+++|+|+|.+|++++ |+.|++||+++.+....+. .+
T Consensus 180 pdg~~lasg~~dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~-~~ 254 (343)
T 3lrv_A 180 KDSLLLALYSPDGILDVYNLSSPDQ---ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP-TY 254 (343)
T ss_dssp TTSCEEEEECTTSCEEEEESSCTTS---CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC-CC
T ss_pred CCCCEEEEEcCCCEEEEEECCCCCC---CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec-cc
Confidence 9999 89999999999999986542 2145666 999999999999999999999 5599999999876433221 11
Q ss_pred cccccce--EEEEee--CCEEEEEeC-CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc---cCCCCceEEEEEecC
Q 013717 340 RGHGKAI--LCLINV--AGLLMSGSA-DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT---EEGQNGVVSVFSGSL 411 (437)
Q Consensus 340 ~~~~~~i--~~~~~~--~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~~~~~~l~s~~~ 411 (437)
..|...+ .+++++ +.+|++++. |+.|++|++..... .. .. .++..+.|.+ +. ..+++++.
T Consensus 255 ~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~--~~-~~----~~~~~~~~~~~~~~~-----~~l~~~~~ 322 (343)
T 3lrv_A 255 TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK--NW-TK----DEESALCLQSDTADF-----TDMDVVCG 322 (343)
T ss_dssp BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC--SE-EE----EEEEECCC----CCC-----CEEEEEEE
T ss_pred ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc--ce-Ee----cCceeEecCcccccc-----ceeEEEec
Confidence 1222222 245555 559999888 99999999976542 11 11 4566777776 33 36777888
Q ss_pred CCcEEEEeec
Q 013717 412 DGEIRAWQVS 421 (437)
Q Consensus 412 dg~i~iw~~~ 421 (437)
||.++++-..
T Consensus 323 d~~~~~~~~~ 332 (343)
T 3lrv_A 323 DGGIAAILKT 332 (343)
T ss_dssp TTEEEEEEEC
T ss_pred CCceEEEEec
Confidence 8888877543
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=9.8e-31 Score=240.06 Aligned_cols=285 Identities=8% Similarity=-0.004 Sum_probs=213.6
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFND 137 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~ 137 (437)
.++.++|....+++++.|++|+ +. .....+ +|...|.+++|+++- .+ .+.+|+.+. .....+
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~----~~~~~l~gh~~~v~~V~FsPdg-----~~~~~~~~~~~~---~~~~~~-- 82 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QP----KYAKDINCNSKNLFHVKEFPLE-----FENKLDFELAQQ---NGLLNS-- 82 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EE----CCCSCCSSBGGGTEEEEEECCC-----CCCTTTTSCCCS---SCSSTT--
T ss_pred EEEEECCCCCEEEEEcCCceee--cc----cccceecCCCccEEEEEECCCC-----CcceEEEEeCCC---ceEeec--
Confidence 4789999999999999999999 42 222444 999999999999322 33 555554432 333333
Q ss_pred CCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC---
Q 013717 138 NDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG--- 212 (437)
Q Consensus 138 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 212 (437)
.|...|.+++|+|++ |++++.||.|++||.+. .+..+ . |.
T Consensus 83 --~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l---------------------------~-~~~~~ 127 (588)
T 2j04_A 83 --QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNL---------------------------D-SKGNL 127 (588)
T ss_dssp --SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEEC---------------------------C-CSSCS
T ss_pred --CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeec---------------------------c-CCCcc
Confidence 468899999999876 99999999999999543 11111 1 22
Q ss_pred --CcEEEEEeCC--CeEEEEECCCcEEEEECCCcce-------EEEe----ecccccEEEEEEecCCeEEEEeCCCeEEE
Q 013717 213 --DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRC-------LESI----KAHEDAVNAVAVSAGGTVYTGSADRKIRV 277 (437)
Q Consensus 213 --~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~l~~~~~dg~v~i 277 (437)
..|.+++|+| ++|++|+.||+|++||+.+++. +.++ .+|...|.+++|+|+| +++++.|+.|++
T Consensus 128 ~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrl 206 (588)
T 2j04_A 128 SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFS 206 (588)
T ss_dssp TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEE
T ss_pred ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEE
Confidence 3599999999 9999999999999999998853 5666 4677899999999999 999999999999
Q ss_pred ecCCCCcccceeeEEe-eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEe--eCC
Q 013717 278 WAKPFNEKRHALIATL-EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN--VAG 354 (437)
Q Consensus 278 wd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~ 354 (437)
||+..+.. ......+ .+|...|.+++|+ |+.|++++ +++|++||+.+++. .....+|...+..+.+ +++
T Consensus 207 Wd~~~~~~-~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~----~~~~~gh~~~V~~va~~~s~d 278 (588)
T 2j04_A 207 MTVSASSH-QPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI----SSLKTGSLENFHIIPLNHEKE 278 (588)
T ss_dssp ECCCSSSS-CCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE----EEEECSCCSCCCEEEETTCSS
T ss_pred EECCCCcc-ccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE----EEEEcCCCceEEEEEeeeCCC
Confidence 99875441 1123445 3688899999999 68899887 79999999987642 1222369999988888 666
Q ss_pred --EEEEEeCCCcEEEeeCCC-----CCC---------------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717 355 --LLMSGSADRTVRIWQRGS-----DGR---------------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL 411 (437)
Q Consensus 355 --~l~~~~~dg~i~iwd~~~-----~~~---------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~ 411 (437)
.|+++++||+ ++|.... ... ...+..+.+ ...|.+++|+|++. ++++++.
T Consensus 279 ~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~-----~lA~~~~ 350 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGY-----SIAIVYD 350 (588)
T ss_dssp CEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSS-----EEEEEEE
T ss_pred CCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCC-----EEEEEEe
Confidence 8999999999 9998632 110 011223333 55699999999984 6777764
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=3.9e-29 Score=232.34 Aligned_cols=299 Identities=11% Similarity=0.105 Sum_probs=219.5
Q ss_pred cCCCceeEEecCCC---cceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEE
Q 013717 74 LSPDETINFSSASH---LCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKS 147 (437)
Q Consensus 74 ~s~dg~i~~~~~~~---~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~ 147 (437)
.+.++.+.+|..+. .......+.+...+.+++|+ +.++++++.+ .|++||+.+++...........+|...|.+
T Consensus 95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~ 174 (433)
T 3bws_A 95 KPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVET 174 (433)
T ss_dssp SGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEE
T ss_pred ccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeE
Confidence 34555455555543 22445555444556699998 5666677777 899999998655433322223578999999
Q ss_pred EEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--C
Q 013717 148 VTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--G 223 (437)
Q Consensus 148 l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~ 223 (437)
++|+++. +++++.|+.|++||+++++....+ ..|...+.+++|++ +
T Consensus 175 ~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~ 224 (433)
T 3bws_A 175 ISIPEHNELWVSQMQANAVHVFDLKTLAYKATV------------------------------DLTGKWSKILLYDPIRD 224 (433)
T ss_dssp EEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE------------------------------ECSSSSEEEEEEETTTT
T ss_pred EEEcCCCEEEEEECCCCEEEEEECCCceEEEEE------------------------------cCCCCCeeEEEEcCCCC
Confidence 9998554 889999999999999876543322 24788999999998 5
Q ss_pred eEE-EEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEe--------CCCeEEEecCCCCcccceeeEEe
Q 013717 224 LIY-SVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGS--------ADRKIRVWAKPFNEKRHALIATL 293 (437)
Q Consensus 224 ~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~--------~dg~v~iwd~~~~~~~~~~~~~~ 293 (437)
.++ +++.|+.|++||+++++.+..+.. ...+.+++|+|++. +++++ .||.|++||+.... ....+
T Consensus 225 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~----~~~~~ 299 (433)
T 3bws_A 225 LVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK----LIDTI 299 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE----EEEEE
T ss_pred EEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc----EEeec
Confidence 564 555899999999999988888764 45599999999997 77777 58899999987543 33333
Q ss_pred eCccccEEEEEEccCCCEE-EEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeC---------
Q 013717 294 EKHKSAVNALALSDDGTVL-FSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSA--------- 361 (437)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~--------- 361 (437)
.+...+.+++|+|+++.+ ++++.|+.|++||+.+++... .+. +...+.+++++++ +|++++.
T Consensus 300 -~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~----~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 373 (433)
T 3bws_A 300 -GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK----SIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGY 373 (433)
T ss_dssp -EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE----EEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCT
T ss_pred -cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE----Eec-CCCCCCeEEEcCCCCEEEEEecCCCcccccc
Confidence 355688999999999755 666889999999998765332 222 4566777777754 7777766
Q ss_pred ------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEec-CCCcEEEEeecc
Q 013717 362 ------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS-LDGEIRAWQVSV 422 (437)
Q Consensus 362 ------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~ 422 (437)
||.|++||+.+++ .+..+.. ...+.+++|+|++. +|++++ .|+.|++|+++.
T Consensus 374 ~~~g~~dg~v~~~d~~~~~---~~~~~~~-~~~~~~~~~s~dg~-----~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 374 LKKGLVLGKVYVIDTTTDT---VKEFWEA-GNQPTGLDVSPDNR-----YLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCCSSCCEEEEEETTTTE---EEEEEEC-SSSEEEEEECTTSC-----EEEEEETTTTEEEEEEETT
T ss_pred ccccccceEEEEEECCCCc---EEEEecC-CCCCceEEEcCCCC-----EEEEEECCCCeEEEEEecC
Confidence 5799999998865 5566655 45799999999885 566555 599999999863
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=8.6e-29 Score=223.33 Aligned_cols=270 Identities=14% Similarity=0.127 Sum_probs=195.2
Q ss_pred cccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEE-EEEecC-eEEEEeCCCCceeeee
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFL-YAASSH-EINVYDRTGTTWTSIN 133 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l-~s~~~d-~v~vwd~~~~~~~~~~ 133 (437)
...++.|.|....+++++.++ +++|+.+..... ... +...+..+++. ++++ ++++.+ .|++||..+++ .+.
T Consensus 21 ~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~--~~~ 95 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-MSQ-EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ--DVS 95 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-EEE-ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--EEE
T ss_pred ceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-eee-ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--EEE
Confidence 345789999999999888776 679998754332 222 22245666665 6666 566777 99999999864 344
Q ss_pred ccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCC-cccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717 134 TFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPT-KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG 212 (437)
Q Consensus 134 ~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (437)
.+ .|...|.++.++++.++.+. |+.|++||+.+. +....+. .
T Consensus 96 ~~----~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~-------------------------------~- 138 (355)
T 3vu4_A 96 RI----KVDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDI-------------------------------R- 138 (355)
T ss_dssp EE----ECSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCE-------------------------------E-
T ss_pred EE----ECCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEec-------------------------------c-
Confidence 44 26679999999998866654 789999999877 4333222 1
Q ss_pred CcEEEEEeCCCeEEE--EECCCcEEEEECCCcc----------------eEEEeecccccEEEEEEecCCe-EEEEeCCC
Q 013717 213 DAVTGLAVNNGLIYS--VSWDKSLKIWRASDLR----------------CLESIKAHEDAVNAVAVSAGGT-VYTGSADR 273 (437)
Q Consensus 213 ~~v~~~~~~~~~l~~--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg 273 (437)
+...+++++.+++. |+.||.|++||+.+++ ++..+.+|...|++++|+|++. |++|+.||
T Consensus 139 -~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~ 217 (355)
T 3vu4_A 139 -FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG 217 (355)
T ss_dssp -EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred -CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence 22334455566666 5789999999999865 2677889999999999999998 99999999
Q ss_pred e-EEEecCCCCcccceeeEEee-C-ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEe------e-------
Q 013717 274 K-IRVWAKPFNEKRHALIATLE-K-HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT------G------- 337 (437)
Q Consensus 274 ~-v~iwd~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~------- 337 (437)
+ |++||++... .+..+. + |...|.+++|+|+|++|++++.|++|++||++......... .
T Consensus 218 ~~v~iwd~~~~~----~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 218 TIIRVFKTEDGV----LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp SEEEEEETTTCC----EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred CEEEEEECCCCc----EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence 8 9999987543 667777 5 89999999999999999999999999999997653211000 0
Q ss_pred -----ee-cccc--cceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717 338 -----AL-RGHG--KAILCLINVAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 338 -----~~-~~~~--~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
.+ .... ..+.++..++.+|++++.||.+++|++..++
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 00 0111 1333444445599999999999999987544
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.5e-27 Score=217.10 Aligned_cols=303 Identities=14% Similarity=0.124 Sum_probs=220.4
Q ss_pred cccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEE-EEEecC-eEEEEeCCCCceeeeeccccCCCCccc
Q 013717 70 SLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFL-YAASSH-EINVYDRTGTTWTSINTFNDNDSSSGS 144 (437)
Q Consensus 70 ~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l-~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~ 144 (437)
.+++.+.|+.|.+|+.... ++...+ +| ..+.+++|+ +++| ++++.+ .|++||+.+++. ...+. +...
T Consensus 4 l~vs~~~d~~v~v~d~~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~--~~~~~----~~~~ 75 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSN-KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATVP----AGSS 75 (391)
T ss_dssp EEEEETTTTEEEEEETTTT-EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEEE----CSSS
T ss_pred EEEEcCCCCEEEEEECCCC-eEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE--EEEEE----CCCC
Confidence 5677889999999999764 555566 55 458999999 7766 667677 999999998644 33331 3348
Q ss_pred EEEEEEeCCe--E-EEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 145 VKSVTFCDGK--I-FTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 145 v~~l~~~~~~--l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
+.+++|+++. | ++++.++.|++||+.+++....+. +...+.+++|+
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-------------------------------~~~~~~~~~~s 124 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-------------------------------TGKSPLGLALS 124 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------------------------------CSSSEEEEEEC
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-------------------------------CCCCcceEEEC
Confidence 9999999765 5 455577999999999876443322 44578999999
Q ss_pred C--CeE-EEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-E-EEEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717 222 N--GLI-YSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHALIATLEKH 296 (437)
Q Consensus 222 ~--~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (437)
+ +.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|++. + ++++.++.|++||++... ....+. +
T Consensus 125 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~~-~ 198 (391)
T 1l0q_A 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS----VIDTVK-V 198 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEEEEE-C
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe----EEEEEe-c
Confidence 8 555 67888999999999999988888754 4579999999997 5 677889999999987543 344443 5
Q ss_pred cccEEEEEEccCCCEEEEEe---CCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEE-EEEeCCCcEEEeeC
Q 013717 297 KSAVNALALSDDGTVLFSGA---CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLL-MSGSADRTVRIWQR 370 (437)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~i~iwd~ 370 (437)
...+.+++|+|+|++|++++ .++.|++||+++++.. ..+..+. .+.++.+++ ++| ++++.|+.|++||+
T Consensus 199 ~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~----~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT----ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE----EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE----EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 66889999999999999888 6899999999877532 2333333 356676664 455 67788999999999
Q ss_pred CCCCCeeeeeeecCCCCCee---EEE------------EEccCCCC-----ceEEEEEecCCCcEEEEeeccCCC
Q 013717 371 GSDGRFGCLAVLEGHTKPVK---SLT------------AVTEEGQN-----GVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 371 ~~~~~~~~~~~~~~h~~~v~---~l~------------~~~~~~~~-----~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.+++ .+..+..|..+.. .+. |+.+.... ....+...+.|..+++|++..+..
T Consensus 274 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 274 ATNT---ITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp TTTE---EEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred CCCc---EEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 9866 5666665544321 122 22221000 003577778899999999977653
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-29 Score=226.72 Aligned_cols=263 Identities=8% Similarity=0.013 Sum_probs=192.9
Q ss_pred ccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCc-------eeeeeccc
Q 013717 65 LPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTT-------WTSINTFN 136 (437)
Q Consensus 65 ~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~-------~~~~~~~~ 136 (437)
.+....+++++.||+|++|+........ .+. ...|.++.++.. +++++.| .|++|+..... .+.+..+.
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~-~~~-~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTIT-TIT-TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEE-EEE-EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEE-EEe-cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 3456789999999999999997644332 222 567888888866 9999999 99999876421 11111111
Q ss_pred cCCCCcccEEEEEEeC--Ce--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717 137 DNDSSSGSVKSVTFCD--GK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG 212 (437)
Q Consensus 137 ~~~~h~~~v~~l~~~~--~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (437)
.+|...|.+++|++ +. +++++.||+|++||+++++...... ..|.
T Consensus 122 --~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----------------------------~~~~ 170 (343)
T 3lrv_A 122 --VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-----------------------------AKSD 170 (343)
T ss_dssp --CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC-----------------------------CCSS
T ss_pred --cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----------------------------cCCC
Confidence 25778999999998 54 8999999999999999876532221 1356
Q ss_pred CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceE-EEeec-ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717 213 DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL-ESIKA-HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 213 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
..|.+++|+| .++++|+.||.|++||+++++.+ ..+.. |...|++++|+|++. |++++ ++.|++||++......
T Consensus 171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL 249 (343)
T ss_dssp CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce
Confidence 6799999998 89999999999999999999887 78887 999999999999999 88888 5599999998654221
Q ss_pred eeeEEeeCccccE--EEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeecccccceEEEEeeC-----CEEEEE
Q 013717 288 ALIATLEKHKSAV--NALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGKAILCLINVA-----GLLMSG 359 (437)
Q Consensus 288 ~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~ 359 (437)
.+..+..|...+ .+++|+|+|++|++++. |+.|++|++......... ..+..+.+.+ ..++++
T Consensus 250 -~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 250 -AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp -SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------EEEEECCC----CCCCEEEEE
T ss_pred -eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe--------cCceeEecCccccccceeEEE
Confidence 122222233333 46999999999999998 999999999766544332 2334444443 488888
Q ss_pred eCCCcEEEeeCC
Q 013717 360 SADRTVRIWQRG 371 (437)
Q Consensus 360 ~~dg~i~iwd~~ 371 (437)
+.||.++++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 889988887544
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.7e-28 Score=224.60 Aligned_cols=240 Identities=11% Similarity=0.137 Sum_probs=186.1
Q ss_pred ccCCeEEEEee--CCEE-EEEecC-eEEEEeCC--CCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEe
Q 013717 97 HKLPIGCIAVH--HNFL-YAASSH-EINVYDRT--GTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQ 168 (437)
Q Consensus 97 h~~~V~~l~~~--~~~l-~s~~~d-~v~vwd~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd 168 (437)
|.+.|.+++|+ +++| ++|+.| .|++||+. ++.. +..+.. ..|...|.+++|+++. |++++.||.|++|+
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~--~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV--LKLRKR-FCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC--EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce--eeeeec-ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 44479999999 7885 889888 99999998 5432 333211 2477899999999765 99999999999999
Q ss_pred CCCCcccc-cccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCC-----eEEEEECCCcEEEEECCCc
Q 013717 169 LTPTKHHK-LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNG-----LIYSVSWDKSLKIWRASDL 242 (437)
Q Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~~~~dg~i~iwd~~~~ 242 (437)
+.+++... ... .+.+|...|.+++|+|. +|++|+.|+.|++||+.++
T Consensus 178 ~~~~~~~~~~~~---------------------------~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 178 INSIPEEKFTQE---------------------------PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp TTSCCCSSCCCC---------------------------CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred cCCcccccccce---------------------------eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 98775432 111 22469999999999876 8999999999999999999
Q ss_pred ceEEE-eecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-------------------------C
Q 013717 243 RCLES-IKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-------------------------K 295 (437)
Q Consensus 243 ~~~~~-~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------------------------~ 295 (437)
+.+.. +.+|...|.+++|+ ++. |++++.|+.|++||+.... .+..+. .
T Consensus 231 ~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
T 2vdu_B 231 FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK----NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI 305 (450)
T ss_dssp TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC----EEEEEECHHHHGGGCCTTSBC----------C
T ss_pred ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc----Eeeeecchhhhhhhhhhccccccccccccccc
Confidence 88877 55899999999999 888 9999999999999987654 333333 2
Q ss_pred ccccEEEEEEccCCCEEEEEe-CCCcEEEEEC--CCCccceEEeeeecccccceEEEEeeCC-EEEEEeC-------CCc
Q 013717 296 HKSAVNALALSDDGTVLFSGA-CDRSILVWDR--EDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSA-------DRT 364 (437)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~-------dg~ 364 (437)
....|.+++|+|++++|++++ .|+.|++|++ ..+ ........+..| ..+.+++++++ ++++.+. +..
T Consensus 306 ~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~-~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~ 383 (450)
T 2vdu_B 306 IEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK-GDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNF 383 (450)
T ss_dssp BCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST-TCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCS
T ss_pred ceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC-CceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcc
Confidence 345789999999999999998 8999999999 433 223345556666 78999999987 4444332 455
Q ss_pred EEEeeCCCC
Q 013717 365 VRIWQRGSD 373 (437)
Q Consensus 365 i~iwd~~~~ 373 (437)
|.+|.+...
T Consensus 384 i~v~~~~~~ 392 (450)
T 2vdu_B 384 AKFIEYNLN 392 (450)
T ss_dssp EEEEEEETT
T ss_pred eEEEEEEcC
Confidence 888887643
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3.9e-29 Score=228.83 Aligned_cols=225 Identities=10% Similarity=0.077 Sum_probs=161.4
Q ss_pred CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--------C--eEEEEecCCeEEEEeCCCCcccc
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--------G--KIFTAHQDCKIRVWQLTPTKHHK 176 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------~--~l~s~~~dg~i~iwd~~~~~~~~ 176 (437)
+.+|++|+.| +|+|||...+.......+..+.+|.+.|++++|+| + .|++++.|++|++||+.++....
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 4589999999 99999999876555555555689999999999985 2 29999999999999998765322
Q ss_pred cccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEe-----
Q 013717 177 LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESI----- 248 (437)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~----- 248 (437)
. +..|...|.+++|+| .+|++|+.||+|++||+++++.....
T Consensus 181 ~------------------------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 181 A------------------------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp E------------------------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred e------------------------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence 2 235889999999998 57999999999999999887543322
Q ss_pred --------------------ecccccEEEEEEe-cCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEE----
Q 013717 249 --------------------KAHEDAVNAVAVS-AGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA---- 302 (437)
Q Consensus 249 --------------------~~~~~~v~~~~~~-~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~---- 302 (437)
.+|...+.++.|+ +++. +++++.|+.+++||+..... ...+..|...+..
T Consensus 231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~----~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND----YNEISDSTMKLGPKNLL 306 (393)
T ss_dssp CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCS
T ss_pred cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC----CceEeeecCccccEEEc
Confidence 2466778899987 7888 99999999999999875432 2222222222222
Q ss_pred --------------EEEcc--CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCc
Q 013717 303 --------------LALSD--DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRT 364 (437)
Q Consensus 303 --------------~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~ 364 (437)
..++| ++.++++|+.||.|++||+.+++.... ..+|...|.+++|+++ +||+++.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~----~~~~~~~V~svafspdG~~LA~as~~G- 381 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI----PIQLGMPIVDFCWHQDGSHLAIATEGS- 381 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE----EEECSSCEEEEEECTTSSEEEEEESSE-
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE----ecCCCCcEEEEEEcCCCCEEEEEeCCC-
Confidence 23333 344677888999999999998765433 3457788998888865 999998776
Q ss_pred EEEeeCC
Q 013717 365 VRIWQRG 371 (437)
Q Consensus 365 i~iwd~~ 371 (437)
+.+|.+.
T Consensus 382 v~lvrL~ 388 (393)
T 4gq1_A 382 VLLTRLM 388 (393)
T ss_dssp EEEEEEG
T ss_pred eEEEEEe
Confidence 6666554
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.9e-27 Score=216.72 Aligned_cols=260 Identities=14% Similarity=0.132 Sum_probs=199.0
Q ss_pred CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--E-EEEecCCeEEEEeCCCCcccccccccCcc
Q 013717 109 NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--I-FTAHQDCKIRVWQLTPTKHHKLKTTLPTV 184 (437)
Q Consensus 109 ~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (437)
.++++++.+ .|++||+.+++ ....+ ..| ..+.+++|+++. + ++++.|+.|++||+.+++....+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~--~~~~~---~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~----- 71 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK--VTATI---PVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP----- 71 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE--EEEEE---ECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----
T ss_pred EEEEEcCCCCEEEEEECCCCe--EEEEe---ecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE-----
Confidence 357788888 99999999864 33343 223 458999999765 4 677799999999998876544332
Q ss_pred ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCcEEEEECCCcceEEEeecccccEEEEEEe
Q 013717 185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS 261 (437)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 261 (437)
+...+.+++|++ ++++ ++..++.|++||+.+++.+..+.. ...+.+++|+
T Consensus 72 --------------------------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s 124 (391)
T 1l0q_A 72 --------------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALS 124 (391)
T ss_dssp --------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEEC
T ss_pred --------------------------CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEEC
Confidence 344899999998 5565 445679999999999998888774 4568999999
Q ss_pred cCCe-E-EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE-EEEeCCCcEEEEECCCCccceEEeee
Q 013717 262 AGGT-V-YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL-FSGACDRSILVWDREDSANHMVVTGA 338 (437)
Q Consensus 262 ~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~ 338 (437)
|+++ + ++++.++.|++||+.... .+..+..+ ..+..++|+|++++| ++++.++.|++||+++++....
T Consensus 125 ~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~---- 195 (391)
T 1l0q_A 125 PDGKKLYVTNNGDKTVSVINTVTKA----VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT---- 195 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTE----EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE----
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCc----EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE----
Confidence 9998 5 688889999999986543 45555543 567999999999987 5777899999999987653322
Q ss_pred ecccccceEEEEeeC--CEEEEEe---CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC
Q 013717 339 LRGHGKAILCLINVA--GLLMSGS---ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG 413 (437)
Q Consensus 339 ~~~~~~~i~~~~~~~--~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg 413 (437)
+. +...+.++.+++ .+|++++ .++.|++||+.+++ .+..+..|. .+.+++|+|++.. ++++++.|+
T Consensus 196 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~---~~~~~~~~~-~~~~~~~s~dg~~----l~~s~~~d~ 266 (391)
T 1l0q_A 196 VK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK---ITARIPVGP-DPAGIAVTPDGKK----VYVALSFXN 266 (391)
T ss_dssp EE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE---EEEEEECCS-SEEEEEECTTSSE----EEEEETTTT
T ss_pred Ee-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe---EEEEEecCC-CccEEEEccCCCE----EEEEcCCCC
Confidence 22 345667777764 4777777 68999999999765 666776665 5789999998853 557889999
Q ss_pred cEEEEeeccCC
Q 013717 414 EIRAWQVSVSC 424 (437)
Q Consensus 414 ~i~iw~~~~~~ 424 (437)
.|++||+.+++
T Consensus 267 ~v~v~d~~~~~ 277 (391)
T 1l0q_A 267 TVSVIDTATNT 277 (391)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCc
Confidence 99999998764
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=7.2e-26 Score=210.33 Aligned_cols=266 Identities=14% Similarity=0.125 Sum_probs=205.8
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeee----ec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceee
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSV----QL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTS 131 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~----~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~ 131 (437)
..+.+.|....+++.+.++.|.+|+......... .+ +|...|.+++|+ ++++++++.+ .|++||+++++ .
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~--~ 203 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA--Y 203 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC--E
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce--E
Confidence 3678888777788888899999999976444321 34 899999999997 8899999998 99999998853 3
Q ss_pred eeccccCCCCcccEEEEEEeCCe--E-EEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717 132 INTFNDNDSSSGSVKSVTFCDGK--I-FTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW 208 (437)
Q Consensus 132 ~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (437)
...+ ..|...+.+++|+++. + ++++.|+.|++||+.+++....+.
T Consensus 204 ~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----------------------------- 251 (433)
T 3bws_A 204 KATV---DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD----------------------------- 251 (433)
T ss_dssp EEEE---ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-----------------------------
T ss_pred EEEE---cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-----------------------------
Confidence 3443 3588899999999765 5 455589999999998876443322
Q ss_pred ecCCCcEEEEEeCC--CeEEEEE--------CCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEE
Q 013717 209 IEHGDAVTGLAVNN--GLIYSVS--------WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIR 276 (437)
Q Consensus 209 ~~~~~~v~~~~~~~--~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~ 276 (437)
+...+.++++++ +.+++++ .||.|++||+.+++.+..+. +...+.+++|+|++. +++++.++.|+
T Consensus 252 --~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 252 --KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp --CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred --CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 345689999998 6888887 58899999999998777663 566899999999996 56778999999
Q ss_pred EecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC---------------CCcEEEEECCCCccceEEeeeecc
Q 013717 277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC---------------DRSILVWDREDSANHMVVTGALRG 341 (437)
Q Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~ 341 (437)
+||+... +....+. +...+.+++|+|+|++|++++. ||.|++||+.+++.... +..
T Consensus 329 v~d~~~~----~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~----~~~ 399 (433)
T 3bws_A 329 VYDLKEK----KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF----WEA 399 (433)
T ss_dssp EEETTTT----EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE----EEC
T ss_pred EEECCCC----cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE----ecC
Confidence 9998744 3444444 6678999999999999988876 57999999987753332 332
Q ss_pred cccceEEEEeeC--CEEEEEeC-CCcEEEeeCCC
Q 013717 342 HGKAILCLINVA--GLLMSGSA-DRTVRIWQRGS 372 (437)
Q Consensus 342 ~~~~i~~~~~~~--~~l~~~~~-dg~i~iwd~~~ 372 (437)
...+.++++++ ++|++++. |+.|++|++..
T Consensus 400 -~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 400 -GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp -SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred -CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 34567777764 47777764 99999999863
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=9.7e-26 Score=194.54 Aligned_cols=257 Identities=12% Similarity=0.067 Sum_probs=169.4
Q ss_pred cccCCCceeEEecCCCc--ceeeeec-CccCCeEEEEee---CCEEEEEecC-eE-EEEeCCCCce-eeeeccccCCCCc
Q 013717 72 QKLSPDETINFSSASHL--CINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EI-NVYDRTGTTW-TSINTFNDNDSSS 142 (437)
Q Consensus 72 ~s~s~dg~i~~~~~~~~--~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v-~vwd~~~~~~-~~~~~~~~~~~h~ 142 (437)
...-....+.+|+.... .++++++ +|..+|..+++. .+++..+-.+ .+ .++-+.-... +.........+|.
T Consensus 57 ~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~ 136 (356)
T 2w18_A 57 IITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNI 136 (356)
T ss_dssp EEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEE
T ss_pred EEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCe
Confidence 33445678999999765 3788888 999999999998 4555555544 22 2222211100 0000000002344
Q ss_pred ccEEEEEEeCCeEEEEe---cCCeEEEEeCCC-CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 143 GSVKSVTFCDGKIFTAH---QDCKIRVWQLTP-TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 143 ~~v~~l~~~~~~l~s~~---~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
..|..+ ..++++.++ .|+.|++|++.. ++.... +..|...+..+
T Consensus 137 ~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s------------------------------~~~~~~~v~~l 184 (356)
T 2w18_A 137 KAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN------------------------------QFLMPPEETIL 184 (356)
T ss_dssp EEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEEE------------------------------EEECCCSSCEE
T ss_pred EEEEec--CCCcEEEecccCCCCcEEEEEECCCCceeee------------------------------eccCCCceeeE
Confidence 445443 344455554 488888888843 432221 13577777777
Q ss_pred EeCC-----CeEEEEECCCcEEEEECCCcceEEEeeccc---ccEEEEEEecCCe-E------------EEEeCCCeEEE
Q 013717 219 AVNN-----GLIYSVSWDKSLKIWRASDLRCLESIKAHE---DAVNAVAVSAGGT-V------------YTGSADRKIRV 277 (437)
Q Consensus 219 ~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~-l------------~~~~~dg~v~i 277 (437)
+|++ ..|++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|. + ++|+.|++|++
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 6665 899999999999999999999999998643 4678889999998 4 56788999999
Q ss_pred ecCCCCcccceeeEEe-----eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceE-EEEe
Q 013717 278 WAKPFNEKRHALIATL-----EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAIL-CLIN 351 (437)
Q Consensus 278 wd~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~-~~~~ 351 (437)
||..+.. .+..+ .+|...+.+..++ +.++++++.|++|+|||+.+++ ....+.+|...+. +++|
T Consensus 265 Wd~~tgk----~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk----~l~tL~gH~~~vvs~vaf 334 (356)
T 2w18_A 265 INPKTTL----SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQ----CTALLPPVSDQHWSFVKW 334 (356)
T ss_dssp EETTTTE----EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCS----EEEEECCC--CCCCEEEE
T ss_pred EECCCCE----EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCc----EEEEecCCCCCeEEEEEE
Confidence 9886543 33322 3555555444444 7899999999999999999887 4445667766543 3555
Q ss_pred e--CCEEEEEeCCCcEEEeeC
Q 013717 352 V--AGLLMSGSADRTVRIWQR 370 (437)
Q Consensus 352 ~--~~~l~~~~~dg~i~iwd~ 370 (437)
+ +.+|++|+.|++|+|||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 5 459999999999999985
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=4.2e-24 Score=202.51 Aligned_cols=322 Identities=13% Similarity=0.072 Sum_probs=227.0
Q ss_pred eccccccccccCCCceeEEecCCCcceeeeec--CccCCeEEEEee--CCEEEEEecC-eEEEEeC--CCCceeeeeccc
Q 013717 64 TLPSVPSLQKLSPDETINFSSASHLCINSVQL--GHKLPIGCIAVH--HNFLYAASSH-EINVYDR--TGTTWTSINTFN 136 (437)
Q Consensus 64 ~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~--~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~--~~~~~~~~~~~~ 136 (437)
+.|....+++.+.+++|.+|+.... +++..+ +|. +.+++|+ |++|++++.+ .|.+||+ .+ .+.+..+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~-~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t--~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSK-KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKE--PTKVAEIK 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTC-CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSS--CEEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCc-eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCC--CcEEEEEe
Confidence 5566677888889999999998764 445555 554 8899999 8999999999 9999999 66 44555552
Q ss_pred cCCCCcccEEEEEEeC----Ce--EEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717 137 DNDSSSGSVKSVTFCD----GK--IFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209 (437)
Q Consensus 137 ~~~~h~~~v~~l~~~~----~~--l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (437)
+...+..++|++ ++ +++++ .+++|.+||..+.+....+........ . .. .
T Consensus 220 ----~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~-------~-----------~~-~ 276 (543)
T 1nir_A 220 ----IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD-------T-----------QT-Y 276 (543)
T ss_dssp ----CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS-------S-----------CC-E
T ss_pred ----cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC-------c-----------cc-c
Confidence 456789999998 65 66666 589999999988765544331100000 0 00 0
Q ss_pred cCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEE--EeecccccEEEEEEecCCe-EEE-EeCCCeEEEecCCC
Q 013717 210 EHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLE--SIKAHEDAVNAVAVSAGGT-VYT-GSADRKIRVWAKPF 282 (437)
Q Consensus 210 ~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~-l~~-~~~dg~v~iwd~~~ 282 (437)
.+...+.++.+++ .++++...++.|.+||+.+.+.+. .+ .+...+..++|+|+++ +++ +..++.|.+||..+
T Consensus 277 ~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t 355 (543)
T 1nir_A 277 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD 355 (543)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence 1234788899987 567777889999999998876544 33 3566788999999998 554 45689999999875
Q ss_pred CcccceeeEEeeC----ccccEEEEEEccC-CCEEEEEe-CCCcEEEEECCCCcc---ceEEeeeecccccceEEEEeeC
Q 013717 283 NEKRHALIATLEK----HKSAVNALALSDD-GTVLFSGA-CDRSILVWDREDSAN---HMVVTGALRGHGKAILCLINVA 353 (437)
Q Consensus 283 ~~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~ 353 (437)
+. ++..+.. |.+....+ ++|+ |..++++. .|++|.+||+.+... .......+.+|...+..+.+++
T Consensus 356 g~----l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p 430 (543)
T 1nir_A 356 RR----LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP 430 (543)
T ss_dssp TE----EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred Ce----EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence 53 4555543 44333333 4677 66666665 589999999987211 1335566777777766666665
Q ss_pred C--EEEEEe-------CCCcEEEeeCCCCCCeeeeee--------ecCCCCCeeEEEEEccCCCCceEEEEEe----cCC
Q 013717 354 G--LLMSGS-------ADRTVRIWQRGSDGRFGCLAV--------LEGHTKPVKSLTAVTEEGQNGVVSVFSG----SLD 412 (437)
Q Consensus 354 ~--~l~~~~-------~dg~i~iwd~~~~~~~~~~~~--------~~~h~~~v~~l~~~~~~~~~~~~~l~s~----~~d 412 (437)
+ +|++++ .+++|.+||+.+.+.. ... +..+...+..+.|+|++.. ++++. +.|
T Consensus 431 dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~----~~~s~~~~~~~~ 504 (543)
T 1nir_A 431 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAK--YQVLPIAEWADLGEGAKRVVQPEYNKRGDE----VWFSVWNGKNDS 504 (543)
T ss_dssp TCCEEEECCTTCSSHHHHTCEEEEETTCTTSC--CEEECHHHHHCCCSSCCEEEEEEECSSSSE----EEEEEECCTTSC
T ss_pred CCCcEEEecCCCCCcccCceEEEEECCCCCCC--eEEeechhhcccCCCCCceEeccCCCCCCE----EEEEeecCCCCC
Confidence 4 888887 2779999999988732 133 2456788999999999864 44443 258
Q ss_pred CcEEEEeeccCCC
Q 013717 413 GEIRAWQVSVSCP 425 (437)
Q Consensus 413 g~i~iw~~~~~~~ 425 (437)
+.|.|||.++.+.
T Consensus 505 ~~i~v~D~~t~~~ 517 (543)
T 1nir_A 505 SALVVVDDKTLKL 517 (543)
T ss_dssp CEEEEEETTTTEE
T ss_pred CeEEEEECCCceE
Confidence 9999999998864
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.7e-24 Score=197.86 Aligned_cols=270 Identities=10% Similarity=-0.005 Sum_probs=202.0
Q ss_pred CCc----eeEEecC--CCcceee-eec-CccCCeEEEEee----------------CCEEEEEec-------CeEEEEeC
Q 013717 76 PDE----TINFSSA--SHLCINS-VQL-GHKLPIGCIAVH----------------HNFLYAASS-------HEINVYDR 124 (437)
Q Consensus 76 ~dg----~i~~~~~--~~~~~~~-~~~-~h~~~V~~l~~~----------------~~~l~s~~~-------d~v~vwd~ 124 (437)
.+| .+++|+. ....... ..+ +|...+..++++ +..++.++. ..|++||+
T Consensus 87 ~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~ 166 (415)
T 2hqs_A 87 PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDY 166 (415)
T ss_dssp TTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEET
T ss_pred CCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcC
Confidence 466 8999999 6554332 445 899888887765 556666654 38999999
Q ss_pred CCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC---eEEEEeCCCCcccccccccCccccceeeecCCCCeeE
Q 013717 125 TGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC---KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVT 199 (437)
Q Consensus 125 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (437)
+++... .+ .+|...|.+++|+|++ |++++.++ .|++||+.+++....
T Consensus 167 ~g~~~~---~l---~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l---------------------- 218 (415)
T 2hqs_A 167 DGYNQF---VV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV---------------------- 218 (415)
T ss_dssp TSCSCE---EE---EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE----------------------
T ss_pred CCCCCE---EE---eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe----------------------
Confidence 864332 22 3588899999999876 88888775 999999998764321
Q ss_pred EeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCc--EEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeC-C
Q 013717 200 VRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKS--LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSA-D 272 (437)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-d 272 (437)
..|...+.+++|+| +.|+ +++.++. |++||+.+++. ..+..+...+.+++|+|+|+ |++++. +
T Consensus 219 ---------~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~ 288 (415)
T 2hqs_A 219 ---------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQA 288 (415)
T ss_dssp ---------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred ---------ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCC
Confidence 24777899999998 5566 6666655 99999998876 55667888999999999998 777775 4
Q ss_pred C--eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEEeeeecccccceE
Q 013717 273 R--KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVVTGALRGHGKAIL 347 (437)
Q Consensus 273 g--~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~ 347 (437)
+ .|.+||+.... ...+..+...+.+++|+|||++|++++.+ ..|++||+.+++.. .+..+. .+.
T Consensus 289 g~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-----~l~~~~-~~~ 357 (415)
T 2hqs_A 289 GRPQVYKVNINGGA-----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-----VLSSTF-LDE 357 (415)
T ss_dssp SSCEEEEEETTSSC-----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-----ECCCSS-SCE
T ss_pred CCcEEEEEECCCCC-----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-----EecCCC-CcC
Confidence 5 67777876543 23344566788999999999999988764 68999999876531 123333 666
Q ss_pred EEEeeC--CEEEEEeCCC---cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717 348 CLINVA--GLLMSGSADR---TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEE 398 (437)
Q Consensus 348 ~~~~~~--~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 398 (437)
++.|++ .+|++++.++ .|++||+..+ ....+.+|.+.|.+++|+|..
T Consensus 358 ~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~----~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 358 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEECTTSSEEEEEEEETTEEEEEEEETTSC----CEEECCCSSSEEEEEEECCCC
T ss_pred CeEEcCCCCEEEEEEcCCCccEEEEEECCCC----cEEEeeCCCCCCcCCcccccc
Confidence 677664 4788887776 7999998753 567888999999999999975
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.1e-24 Score=198.55 Aligned_cols=272 Identities=11% Similarity=0.040 Sum_probs=197.6
Q ss_pred cCCeEEEEee---CCEEEEEe--------cC-eEEEEeC--CCCceeeeeccccCCCCcccEEEEEEe------------
Q 013717 98 KLPIGCIAVH---HNFLYAAS--------SH-EINVYDR--TGTTWTSINTFNDNDSSSGSVKSVTFC------------ 151 (437)
Q Consensus 98 ~~~V~~l~~~---~~~l~s~~--------~d-~v~vwd~--~~~~~~~~~~~~~~~~h~~~v~~l~~~------------ 151 (437)
...|...+|. .+++++|+ .+ .|++||+ .+++......+ .+|...+..+++.
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~~~~~g~ 138 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSY---KVNKQWLRYAGHTASDEVFEKLTGI 138 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEE---EECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEE---EcChhHHHHHHHHHHHHHHHHHcCC
Confidence 3466666776 46677776 12 7999999 77643322334 4577777777665
Q ss_pred ----CCeEEEEecC------CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 152 ----DGKIFTAHQD------CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 152 ----~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
+..++.++.+ +.|++||++.... . .+.+|...+.+++|+
T Consensus 139 ~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~------------------------------~l~~~~~~v~~~~~S 187 (415)
T 2hqs_A 139 KGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-F------------------------------VVHRSPQPLMSPAWS 187 (415)
T ss_dssp CCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-E------------------------------EEEEESSCEEEEEEC
T ss_pred CCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-E------------------------------EEeCCCCcceeeEEc
Confidence 3456666654 7999999975331 1 223588899999999
Q ss_pred C--CeEEEEECCC---cEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCCe--EEEecCCCCcccceeeEE
Q 013717 222 N--GLIYSVSWDK---SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADRK--IRVWAKPFNEKRHALIAT 292 (437)
Q Consensus 222 ~--~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~--v~iwd~~~~~~~~~~~~~ 292 (437)
| +.|++++.++ .|++||+.+++.. .+..+...+.+++|+|||+ |+ +++.++. |.+||+.... ...
T Consensus 188 pdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-----~~~ 261 (415)
T 2hqs_A 188 PDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-----IRQ 261 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-----EEE
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-----EEe
Confidence 9 7899998875 9999999998875 4556788999999999998 66 5666554 9999987543 345
Q ss_pred eeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCC---Cc
Q 013717 293 LEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSAD---RT 364 (437)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d---g~ 364 (437)
+..|...+.+++|+|||++|++++. ++ .|++||+.+++.. .+..+...+.++.|++ ++|++++.+ +.
T Consensus 262 l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-----~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~ 336 (415)
T 2hqs_A 262 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-----RITWEGSQNQDADVSSDGKFMVMVSSNGGQQH 336 (415)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-----ECCCSSSEEEEEEECTTSSEEEEEEECSSCEE
T ss_pred CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-----EEecCCCcccCeEECCCCCEEEEEECcCCceE
Confidence 6678889999999999999988876 44 6788898876421 1233455666666654 477777664 58
Q ss_pred EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC---cEEEEeeccCC
Q 013717 365 VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG---EIRAWQVSVSC 424 (437)
Q Consensus 365 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg---~i~iw~~~~~~ 424 (437)
|++||+.+++ . ..+..|. .+.+++|+|++. +|++++.|+ .|++||++.+.
T Consensus 337 i~~~d~~~~~---~-~~l~~~~-~~~~~~~spdg~-----~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 337 IAKQDLATGG---V-QVLSSTF-LDETPSLAPNGT-----MVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEETTTCC---E-EECCCSS-SCEEEEECTTSS-----EEEEEEEETTEEEEEEEETTSCC
T ss_pred EEEEECCCCC---E-EEecCCC-CcCCeEEcCCCC-----EEEEEEcCCCccEEEEEECCCCc
Confidence 9999999866 2 4455554 899999999985 677777766 79999987654
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=2.6e-23 Score=197.11 Aligned_cols=276 Identities=9% Similarity=0.125 Sum_probs=203.3
Q ss_pred ee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeC--CCCcccccc
Q 013717 106 VH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQL--TPTKHHKLK 178 (437)
Q Consensus 106 ~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~--~~~~~~~~~ 178 (437)
++ +.++++++.+ .|.+||..+++ .+..+. .++. +..++|++++ |++++.|++|++||+ .+++....+
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~--~~~~i~--~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKK--IVKVID--TGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCC--EEEEEE--CSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCce--EEEEEe--cCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 55 7788888888 99999999854 344442 1233 8899999775 899999999999999 655433222
Q ss_pred cccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC------CeEEEEE-CCCcEEEEECCCcceEEEeecc
Q 013717 179 TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN------GLIYSVS-WDKSLKIWRASDLRCLESIKAH 251 (437)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 251 (437)
. +...+..++|+| +++++++ .+++|.+||..+++++..+..+
T Consensus 219 ~-------------------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~ 267 (543)
T 1nir_A 219 K-------------------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 267 (543)
T ss_dssp E-------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred e-------------------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence 1 455678899985 6787777 4899999999999998888642
Q ss_pred -----------cccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-C
Q 013717 252 -----------EDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-C 317 (437)
Q Consensus 252 -----------~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 317 (437)
...+.++.++|++. +++...++.|.+||+...... .+..+. +...+..+.|+|+|++|++++ .
T Consensus 268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l--~~~~i~-~~~~~~~~~~spdg~~l~va~~~ 344 (543)
T 1nir_A 268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL--TVTSIG-AAPFLHDGGWDSSHRYFMTAANN 344 (543)
T ss_dssp EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC--EEEEEE-CCSSCCCEEECTTSCEEEEEEGG
T ss_pred CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc--eeEEec-cCcCccCceECCCCCEEEEEecC
Confidence 23789999999776 677788999999998754321 122332 456788999999999876654 5
Q ss_pred CCcEEEEECCCCccceEEeeeecccccceEEEE-ee-CCEEEEEe-CCCcEEEeeCCCCCC----eeeeeeecCCCCCee
Q 013717 318 DRSILVWDREDSANHMVVTGALRGHGKAILCLI-NV-AGLLMSGS-ADRTVRIWQRGSDGR----FGCLAVLEGHTKPVK 390 (437)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-~~-~~~l~~~~-~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~ 390 (437)
+++|.+||+.+++....+......|......+. .. +.+++++. .|++|.+||+.+.+. ++++.++.+|.+.+.
T Consensus 345 ~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~ 424 (543)
T 1nir_A 345 SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL 424 (543)
T ss_dssp GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC
T ss_pred CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCce
Confidence 889999999988644333222223554444443 23 23666665 689999999987321 568999999999999
Q ss_pred EEEEEccCCCCceEEEEEec-------CCCcEEEEeeccCCCC
Q 013717 391 SLTAVTEEGQNGVVSVFSGS-------LDGEIRAWQVSVSCPN 426 (437)
Q Consensus 391 ~l~~~~~~~~~~~~~l~s~~-------~dg~i~iw~~~~~~~~ 426 (437)
.++++|++. +|++++ .+++|.+||+.+.+..
T Consensus 425 ~v~~~pdg~-----~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 425 FIKTHPKSS-----HLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp CEECCTTCC-----EEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred EEEcCCCCC-----cEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 999999985 688876 2789999999988754
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=5.2e-22 Score=178.15 Aligned_cols=270 Identities=8% Similarity=0.168 Sum_probs=177.2
Q ss_pred EEEEecC-eEEEEeCC-CCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC-CeEEEEeCC--CCcccccccccCc
Q 013717 111 LYAASSH-EINVYDRT-GTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD-CKIRVWQLT--PTKHHKLKTTLPT 183 (437)
Q Consensus 111 l~s~~~d-~v~vwd~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d-g~i~iwd~~--~~~~~~~~~~~~~ 183 (437)
+++++.+ .|++||+. ++..+....+ .|...+.+++|++++ |++++.+ +.|.+|+++ +++... ...
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~--- 79 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVV----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-AAE--- 79 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEE---
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeE----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee-ccc---
Confidence 3444667 99999996 3334444443 367789999999765 7777766 999999997 333211 111
Q ss_pred cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC-CCcEEEEECC---CcceEEEeecccccEEE
Q 013717 184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW-DKSLKIWRAS---DLRCLESIKAHEDAVNA 257 (437)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~ 257 (437)
+. ....+..++|++ +++++++. ++.|.+||+. ..+.+..+. ....+.+
T Consensus 80 ------------------------~~-~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~ 133 (343)
T 1ri6_A 80 ------------------------SA-LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHS 133 (343)
T ss_dssp ------------------------EE-CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCC
T ss_pred ------------------------cc-cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceE
Confidence 11 223678899988 66666654 8899999994 444444444 3445889
Q ss_pred EEEecCCe-EEEEe-CCCeEEEecCCCCcccceeeE--Eee-CccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCcc
Q 013717 258 VAVSAGGT-VYTGS-ADRKIRVWAKPFNEKRHALIA--TLE-KHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSAN 331 (437)
Q Consensus 258 ~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~ 331 (437)
++|+|+++ +++++ .++.|.+||+...... .... ... .....+..++|+|+|+++++++ .++.|.+|++.....
T Consensus 134 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g 212 (343)
T 1ri6_A 134 ANISPDNRTLWVPALKQDRICLFTVSDDGHL-VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 212 (343)
T ss_dssp CEECTTSSEEEEEEGGGTEEEEEEECTTSCE-EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred EEECCCCCEEEEecCCCCEEEEEEecCCCce-eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 99999998 76666 8999999998752211 1111 222 2345788999999999776554 789999999964222
Q ss_pred ceEEeeeec----cc--ccceEEEEee--CCEEE-EEeCCCcEEEeeCCCC-CCeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717 332 HMVVTGALR----GH--GKAILCLINV--AGLLM-SGSADRTVRIWQRGSD-GRFGCLAVLEGHTKPVKSLTAVTEEGQN 401 (437)
Q Consensus 332 ~~~~~~~~~----~~--~~~i~~~~~~--~~~l~-~~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 401 (437)
......... ++ ...+..+.++ +++|+ ++..++.|++||+... .....+..+..+.. +.+++|+|++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~-- 289 (343)
T 1ri6_A 213 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGK-- 289 (343)
T ss_dssp CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSS--
T ss_pred cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCC--
Confidence 111111111 11 2234456666 44555 5557999999999832 22345555655554 89999999885
Q ss_pred ceEEEEEec-CCCcEEEEeec
Q 013717 402 GVVSVFSGS-LDGEIRAWQVS 421 (437)
Q Consensus 402 ~~~~l~s~~-~dg~i~iw~~~ 421 (437)
+|++++ .|+.|.+|+++
T Consensus 290 ---~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 290 ---YLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp ---EEEEECTTTCEEEEEEEE
T ss_pred ---EEEEecCCCCeEEEEEEc
Confidence 455555 78999999776
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=2e-21 Score=174.32 Aligned_cols=294 Identities=10% Similarity=0.107 Sum_probs=192.8
Q ss_pred ccccCCCceeEEecCCCcc--eeeeecCccCCeEEEEee--CCEEEEEecC--eEEEEeCC--CCceeeeeccccCCCCc
Q 013717 71 LQKLSPDETINFSSASHLC--INSVQLGHKLPIGCIAVH--HNFLYAASSH--EINVYDRT--GTTWTSINTFNDNDSSS 142 (437)
Q Consensus 71 ~~s~s~dg~i~~~~~~~~~--~~~~~~~h~~~V~~l~~~--~~~l~s~~~d--~v~vwd~~--~~~~~~~~~~~~~~~h~ 142 (437)
+++.+.++.|.+|+.+... .....+.|...+.+++|+ +++|++++.+ .|.+|++. ++....+..+. .+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~- 83 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA---LP- 83 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE---CS-
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc---cC-
Confidence 3444679999999985333 344445788899999998 8888888764 99999998 55555555542 22
Q ss_pred ccEEEEEEeCCe--EEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717 143 GSVKSVTFCDGK--IFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA 219 (437)
Q Consensus 143 ~~v~~l~~~~~~--l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (437)
..+..++|+++. +++++ .++.|.+||+..+........+ .....+.+++
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----------------------------~~~~~~~~~~ 135 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV----------------------------EGLDGCHSAN 135 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE----------------------------CCCTTBCCCE
T ss_pred CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc----------------------------cCCCCceEEE
Confidence 378899999765 55554 5899999999533211111111 1334578889
Q ss_pred eCC--CeEEEEE-CCCcEEEEECCC-cceEE----Eeec-ccccEEEEEEecCCe-EEEE-eCCCeEEEecCCCCcccce
Q 013717 220 VNN--GLIYSVS-WDKSLKIWRASD-LRCLE----SIKA-HEDAVNAVAVSAGGT-VYTG-SADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 220 ~~~--~~l~~~~-~dg~i~iwd~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~-l~~~-~~dg~v~iwd~~~~~~~~~ 288 (437)
|++ +++++++ .++.|++||+.+ ++... .+.. ....+..++|+|++. ++++ ..++.|.+||+........
T Consensus 136 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 136 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 988 6777777 899999999987 65432 2222 345788999999998 5544 4789999999864322222
Q ss_pred eeEEeeC---c---cccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEE
Q 013717 289 LIATLEK---H---KSAVNALALSDDGTVLFSG-ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSG 359 (437)
Q Consensus 289 ~~~~~~~---~---~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~ 359 (437)
....... . ...+..++|+|+|++|+++ ..++.|.+||+............+..+.. +..++++ +++|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEe
Confidence 2222221 1 2357789999999988754 47899999999842222223333333333 5555555 5577777
Q ss_pred e-CCCcEEEeeCC--CCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717 360 S-ADRTVRIWQRG--SDGRFGCLAVLEGHTKPVKSLTAVTEEG 399 (437)
Q Consensus 360 ~-~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 399 (437)
+ .++.|.+|++. +++ ...+..+... ....+++|.++.+
T Consensus 295 ~~~~~~v~v~~~d~~~g~-~~~~~~~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 295 GQKSHHISVYEIVGEQGL-LHEKGRYAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp CTTTCEEEEEEEETTTTE-EEEEEEEECS-SSCCEEEEEEEC-
T ss_pred cCCCCeEEEEEEcCCCce-eeEccccccC-CCCeeEEEEcccC
Confidence 6 68999999654 433 3345555442 4567888888764
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=3.2e-21 Score=172.29 Aligned_cols=273 Identities=8% Similarity=0.059 Sum_probs=180.3
Q ss_pred CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe-cCCeEEEEeCCCCcc-cccccccC
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH-QDCKIRVWQLTPTKH-HKLKTTLP 182 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~-~dg~i~iwd~~~~~~-~~~~~~~~ 182 (437)
+..+++++.+ .|.+||..+++....... +...+ .++|++++ +++++ .++.|.+||+.+++. ....
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~---- 79 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITL-----GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI---- 79 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEEC-----CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE----
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEc-----cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec----
Confidence 4456677777 999999998655443332 44556 99999765 55554 489999999988764 2211
Q ss_pred ccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCC---cEEEEECCCcceEEEeecccccEEE
Q 013717 183 TVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDK---SLKIWRASDLRCLESIKAHEDAVNA 257 (437)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~ 257 (437)
..+..+..++++++ ++++++..++ .|.+||+.+++.+..+.. .....+
T Consensus 80 --------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~ 132 (331)
T 3u4y_A 80 --------------------------QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVG 132 (331)
T ss_dssp --------------------------EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEE
T ss_pred --------------------------ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccc
Confidence 22444554588988 6777544443 899999999998887764 445789
Q ss_pred EEEecCCe-EEE-EeCCCe-EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCccce
Q 013717 258 VAVSAGGT-VYT-GSADRK-IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSANHM 333 (437)
Q Consensus 258 ~~~~~~~~-l~~-~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~ 333 (437)
++|+|+|+ +++ ...++. |.+|++...................+..++|+|+|++++++ ..++.|++||+.+++...
T Consensus 133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT 212 (331)
T ss_dssp EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence 99999997 544 455688 99999874332211112222345568999999999966554 468999999998876511
Q ss_pred EEeeeecccccceEEEEee--CCEEEEE-eCCCcEEEeeCCCCCCeeeeeeecCC----CC---CeeEEEEEccCCCCce
Q 013717 334 VVTGALRGHGKAILCLINV--AGLLMSG-SADRTVRIWQRGSDGRFGCLAVLEGH----TK---PVKSLTAVTEEGQNGV 403 (437)
Q Consensus 334 ~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~h----~~---~v~~l~~~~~~~~~~~ 403 (437)
. ...+.. ...+..+.++ +++++++ ..++.|.+||+.+++. ..+..+..+ .. ....++|+|++..
T Consensus 213 ~-~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~--- 286 (331)
T 3u4y_A 213 L-LNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETK--- 286 (331)
T ss_dssp E-EEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSE---
T ss_pred e-eeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCE---
Confidence 1 222222 2334444554 5555554 4578899999987652 123333322 22 2356899999863
Q ss_pred EEEEEecCCCcEEEEeeccCC
Q 013717 404 VSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 404 ~~l~s~~~dg~i~iw~~~~~~ 424 (437)
+++++..++.|++||+....
T Consensus 287 -l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 287 -LFISANISRELKVFTISGKV 306 (331)
T ss_dssp -EEEEETTTTEEEEEETTSCE
T ss_pred -EEEecCCCCcEEEEEecCCc
Confidence 55667778899999998654
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=1.4e-21 Score=193.87 Aligned_cols=330 Identities=13% Similarity=0.054 Sum_probs=215.5
Q ss_pred cceeeccccccccccCC-Cc-----eeEEecCCCcceeeeecCcc------------------------CCeEEEEee--
Q 013717 60 LSLQTLPSVPSLQKLSP-DE-----TINFSSASHLCINSVQLGHK------------------------LPIGCIAVH-- 107 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~-dg-----~i~~~~~~~~~~~~~~~~h~------------------------~~V~~l~~~-- 107 (437)
..+.++|....+++.+. |+ .|.+|+..........-.|. ..|.+++|+
T Consensus 40 ~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD 119 (741)
T 2ecf_A 40 MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD 119 (741)
T ss_dssp EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTT
T ss_pred CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCC
Confidence 46789999999999988 88 89999987644332222333 238899999
Q ss_pred CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccc
Q 013717 108 HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVN 185 (437)
Q Consensus 108 ~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 185 (437)
|++|++++.+.|.+||+.++.......+ ..|...+..++|+|++ |+.++ ++.|.+||+.+++.........
T Consensus 120 g~~l~~~~~~~i~~~d~~~~~~~~~~~l---~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~--- 192 (741)
T 2ecf_A 120 AQRLLFPLGGELYLYDLKQEGKAAVRQL---THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS--- 192 (741)
T ss_dssp SSEEEEEETTEEEEEESSSCSTTSCCBC---CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC---
T ss_pred CCEEEEEeCCcEEEEECCCCCcceEEEc---ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc---
Confidence 8999999878999999998510012222 3577889999999876 66555 6799999998875433221100
Q ss_pred cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCC-------------------------------
Q 013717 186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDK------------------------------- 232 (437)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg------------------------------- 232 (437)
.. +. .....-+.......+.++.|+| ++|++++.|+
T Consensus 193 ~~----------~~-~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 193 TT----------IG-NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp SS----------EE-ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred cc----------ee-ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 00 00 0000000000112246788888 7777777665
Q ss_pred --cEEEEECCC-cceEEEee--cccccEEEEEEecCCe-EEEEeC-----CCeEEEecCCCCcccceeeEEeeCccc---
Q 013717 233 --SLKIWRASD-LRCLESIK--AHEDAVNAVAVSAGGT-VYTGSA-----DRKIRVWAKPFNEKRHALIATLEKHKS--- 298 (437)
Q Consensus 233 --~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~--- 298 (437)
.|.+||+.+ ++...... .+...+..++| |||+ |++++. +..|.+||+.+.. ....+..+..
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~ 336 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ----QRVLAHETSPTWV 336 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC----EEEEEEEECSSCC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc----eEEEEEcCCCCcC
Confidence 789999988 87654433 36778999999 9998 666543 5789999987543 2233333322
Q ss_pred -cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEE-Eee--CCEE-EEEeCCC--cEEEeeCC
Q 013717 299 -AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL-INV--AGLL-MSGSADR--TVRIWQRG 371 (437)
Q Consensus 299 -~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~-~~~--~~~l-~~~~~dg--~i~iwd~~ 371 (437)
.+..++|+|||+++++++.||.++||.+..... ...+..+...+..+ .++ ++.| ++++.++ .++||++.
T Consensus 337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~----~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK----AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC----EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC----eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 456889999999999999999888887763222 22344556666554 344 5555 4555565 89999986
Q ss_pred CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC---CcEEEEeeccC
Q 013717 372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD---GEIRAWQVSVS 423 (437)
Q Consensus 372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~ 423 (437)
... .....+.. ...+..++|+|++.. ++++.+.. +.+.+|+...+
T Consensus 413 ~~g--~~~~~l~~-~~~~~~~~~spdg~~----l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 413 LQG--GQPQRLSK-APGMHSASFARNASV----YVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp TTC--CCCEECCC-SCSEEEEEECTTSSE----EEEEEEETTEEEEEEEEETTSC
T ss_pred cCC--CCeeeccc-CCCceEEEECCCCCE----EEEEecCCCCCCeEEEEEcCCC
Confidence 532 23455554 667889999999863 44454443 46888886543
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=3.9e-21 Score=190.74 Aligned_cols=279 Identities=10% Similarity=0.078 Sum_probs=197.4
Q ss_pred cCCeEEEEee--CCEEEEEec-C------eEEEEeCCCCceeeeeccccCCCCc----------------------ccEE
Q 013717 98 KLPIGCIAVH--HNFLYAASS-H------EINVYDRTGTTWTSINTFNDNDSSS----------------------GSVK 146 (437)
Q Consensus 98 ~~~V~~l~~~--~~~l~s~~~-d------~v~vwd~~~~~~~~~~~~~~~~~h~----------------------~~v~ 146 (437)
...|.+++|+ |++|++++. + .|++||+.+++...+... ..+. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDS---KVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECG---GGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccch---hhcccccccccchhhhhhhhhhhccccCcc
Confidence 4578999999 899999886 3 699999998755544433 1122 3488
Q ss_pred EEEEeCCe--EEEEecCCeEEEEeCCCC---cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 147 SVTFCDGK--IFTAHQDCKIRVWQLTPT---KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 147 ~l~~~~~~--l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
+++|+|++ |++++. +.|.+||+.++ +.... ..|...+..++|+
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-------------------------------~~~~~~~~~~~~S 160 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-------------------------------THGEGFATDAKLS 160 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-------------------------------CCSSSCEEEEEEC
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-------------------------------ccCCcccccccCC
Confidence 99999876 666665 99999999877 32221 1366789999999
Q ss_pred C--CeEEEEECCCcEEEEECCCcceEEEeeccccc----------------EEEEEEecCCe-EEEEeCCC---------
Q 013717 222 N--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDA----------------VNAVAVSAGGT-VYTGSADR--------- 273 (437)
Q Consensus 222 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~-l~~~~~dg--------- 273 (437)
| ++|+.++ ++.|++||+.+++.......+... +.+++|+|||+ |++++.|+
T Consensus 161 PDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~ 239 (741)
T 2ecf_A 161 PKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRY 239 (741)
T ss_dssp TTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecC
Confidence 9 6777776 569999999988766554433332 47899999999 88887765
Q ss_pred ------------------------eEEEecCCC-CcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-----CCcEEE
Q 013717 274 ------------------------KIRVWAKPF-NEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-----DRSILV 323 (437)
Q Consensus 274 ------------------------~v~iwd~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i 323 (437)
.|.+||+.. ... ..+.....+...+..++| |||++|++++. +..|++
T Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~ 316 (741)
T 2ecf_A 240 EVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT--QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVE 316 (741)
T ss_dssp EECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC--EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEE
T ss_pred CCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce--EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEE
Confidence 788898865 431 111111146778999999 99999987754 678999
Q ss_pred EECCCCccceEEeeeecccccce--EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEE-EEEccCCC
Q 013717 324 WDREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSL-TAVTEEGQ 400 (437)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~ 400 (437)
||+.+++..........+....+ ..+..+++++++++.||.++||.+.... . ...+..|...|..+ .|+|++..
T Consensus 317 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~ 393 (741)
T 2ecf_A 317 VTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGL 393 (741)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTE
T ss_pred EECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCE
Confidence 99998764433322111110022 3444456688899999988888876433 2 56777788889887 59999863
Q ss_pred CceEEEEEecCCC--cEEEEeecc
Q 013717 401 NGVVSVFSGSLDG--EIRAWQVSV 422 (437)
Q Consensus 401 ~~~~~l~s~~~dg--~i~iw~~~~ 422 (437)
++++++.|+ .+++|++..
T Consensus 394 ----l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 394 ----AYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ----EEEEECSSCTTCBEEEEEET
T ss_pred ----EEEEEeCCCCceEEEEEEEc
Confidence 566777776 899999975
No 136
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=3.9e-21 Score=197.25 Aligned_cols=310 Identities=9% Similarity=0.021 Sum_probs=220.8
Q ss_pred cceeeccccccccccCCC------ceeEEecCCCcceeeeec-CccCCe-------EEEEee--CCEEEEEec------C
Q 013717 60 LSLQTLPSVPSLQKLSPD------ETINFSSASHLCINSVQL-GHKLPI-------GCIAVH--HNFLYAASS------H 117 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~d------g~i~~~~~~~~~~~~~~~-~h~~~V-------~~l~~~--~~~l~s~~~------d 117 (437)
..+.++|....++..+.+ ..|.+|+..... ...+ +|...+ .+++|+ |+++++++. .
T Consensus 56 ~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~ 133 (1045)
T 1k32_A 56 NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE--IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSM 133 (1045)
T ss_dssp EEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE--EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTC
T ss_pred cCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC--eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCccc
Confidence 467889999988877543 478889886543 4455 888888 999999 777777773 2
Q ss_pred -eEEEEeCCCCceeeeecc--------------------------------------------ccCCCCcccEEEEEEeC
Q 013717 118 -EINVYDRTGTTWTSINTF--------------------------------------------NDNDSSSGSVKSVTFCD 152 (437)
Q Consensus 118 -~v~vwd~~~~~~~~~~~~--------------------------------------------~~~~~h~~~v~~l~~~~ 152 (437)
.|.+|++.++....+... ....+|...+.++.|++
T Consensus 134 ~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~ 213 (1045)
T 1k32_A 134 TCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG 213 (1045)
T ss_dssp CEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET
T ss_pred ceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC
Confidence 688888877543321110 00124666777888887
Q ss_pred Ce-EEEEecCCeEEEEeCCC-CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE
Q 013717 153 GK-IFTAHQDCKIRVWQLTP-TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV 228 (437)
Q Consensus 153 ~~-l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~ 228 (437)
+. +++++.|+.+++|.++. +.....+ ..|. .+...+|+| +.++.+
T Consensus 214 d~l~~~~~~dg~~~l~~~~~~g~~~~~l------------------------------~~~~-~~~~~~~SpDG~~la~~ 262 (1045)
T 1k32_A 214 HRIYFITDIDGFGQIYSTDLDGKDLRKH------------------------------TSFT-DYYPRHLNTDGRRILFS 262 (1045)
T ss_dssp TEEEEEECTTSSCEEEEEETTSCSCEEC------------------------------CCCC-SSCEEEEEESSSCEEEE
T ss_pred CEEEEEEeccCceEEEEEeCCCCcceEe------------------------------cCCC-CcceeeEcCCCCEEEEE
Confidence 77 45666778888887653 2111111 1232 344556666 667766
Q ss_pred ECCCcEEEEECCCcceEEEeec-----------ccccEEEEEEe-cCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717 229 SWDKSLKIWRASDLRCLESIKA-----------HEDAVNAVAVS-AGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK 295 (437)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 295 (437)
.++.|.+||+...+ +..+.. +...+.+++|+ |+|+ +++++ ++.|.+|++.... ...+..
T Consensus 263 -~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-----~~~~~~ 334 (1045)
T 1k32_A 263 -KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-----VLKVPE 334 (1045)
T ss_dssp -ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-----EEECSC
T ss_pred -eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-----eEEccC
Confidence 58999999995443 335443 33468999999 9998 77776 8899999886432 233455
Q ss_pred ccc-cEEEEEEccCCCEEEEEeCCCcEE-EEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717 296 HKS-AVNALALSDDGTVLFSGACDRSIL-VWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 296 ~~~-~i~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~ 371 (437)
+.. .+..++|+ ||+.|+.++.++.+. +||+..++. . .+.+|...+..+.++++ +|++++.++.|++||+.
T Consensus 335 ~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~----~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~ 408 (1045)
T 1k32_A 335 PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA----E-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 408 (1045)
T ss_dssp CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE----E-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc----e-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence 666 89999999 999999998888898 999876542 1 12356677777777654 99999999999999999
Q ss_pred CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC----------cEEEEeeccCC
Q 013717 372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG----------EIRAWQVSVSC 424 (437)
Q Consensus 372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg----------~i~iw~~~~~~ 424 (437)
+++ ....+.+|...+.+++|+|++. +|++++.++ .|++||+.+++
T Consensus 409 tg~---~~~~~~~~~~~v~~~~~SpDG~-----~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 409 TGK---PTVIERSREAMITDFTISDNSR-----FIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp TCC---EEEEEECSSSCCCCEEECTTSC-----EEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCc---eEEeccCCCCCccceEECCCCC-----eEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 876 5556668999999999999985 677776544 89999998764
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=4.3e-21 Score=189.38 Aligned_cols=317 Identities=6% Similarity=0.004 Sum_probs=200.4
Q ss_pred cccccccCCCceeEEecCCCccee-eeecCcc-----------------CCeEEEEee-CCEEEEEecCeEEEEeCCCCc
Q 013717 68 VPSLQKLSPDETINFSSASHLCIN-SVQLGHK-----------------LPIGCIAVH-HNFLYAASSHEINVYDRTGTT 128 (437)
Q Consensus 68 ~~~~~s~s~dg~i~~~~~~~~~~~-~~~~~h~-----------------~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~ 128 (437)
...+...+.++ | +|+....... ...+.|. ..|.+++|+ .++++.+....|++||+.+++
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~ 112 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGGLVGFDMLARK 112 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEETTEEEEEETTTTE
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEECCEEEEEECCCCc
Confidence 34455566677 7 9998665442 2233333 579999999 555555544599999999864
Q ss_pred eeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCC-----CcccccccccCccccceeeecCCCCeeEEe
Q 013717 129 WTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTP-----TKHHKLKTTLPTVNDRLLRFMLPNSYVTVR 201 (437)
Q Consensus 129 ~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (437)
...+. .+...+.+++|+|++ |++ ..|+.|++||+.+ ++......... .. +. .
T Consensus 113 ~~~l~------~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~---~~----------~~-~ 171 (706)
T 2z3z_A 113 VTYLF------DTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGT---ET----------LV-Y 171 (706)
T ss_dssp EEEEE------CCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCB---TT----------EE-E
T ss_pred eEEcc------CCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCC---CC----------eE-c
Confidence 43332 356678889999876 555 5789999999987 55332221100 00 00 0
Q ss_pred eccceeeecCCCcEEEEEeCC--CeEEEEE---------------------------------CCCcEEEEECCCcceEE
Q 013717 202 RHKKKLWIEHGDAVTGLAVNN--GLIYSVS---------------------------------WDKSLKIWRASDLRCLE 246 (437)
Q Consensus 202 ~~~~~~~~~~~~~v~~~~~~~--~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~ 246 (437)
... +...+...+.++.|+| ++|++++ .+..|++||+.+++...
T Consensus 172 g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~ 249 (706)
T 2z3z_A 172 GQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY 249 (706)
T ss_dssp SSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred ccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence 000 1112233467888988 7788776 44779999999887654
Q ss_pred Eee--cccccEEEEEEecCCe-EEEEeCCC-----eEEEecCCCCcccceeeEEeeCcc---ccEEEEEEcc--CCCEEE
Q 013717 247 SIK--AHEDAVNAVAVSAGGT-VYTGSADR-----KIRVWAKPFNEKRHALIATLEKHK---SAVNALALSD--DGTVLF 313 (437)
Q Consensus 247 ~~~--~~~~~v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~---~~i~~~~~~~--~~~~l~ 313 (437)
... .+...+.+++|+|||+ |++++.++ .|.+||+.+..... .+.. ..+. ..+..++|+| ||++++
T Consensus 250 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~-~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~ 327 (706)
T 2z3z_A 250 LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR-TLFV-ETDKHYVEPLHPLTFLPGSNNQFIW 327 (706)
T ss_dssp CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE-EEEE-EECSSCCCCCSCCEECTTCSSEEEE
T ss_pred eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee-EEEE-ccCCCeECccCCceeecCCCCEEEE
Confidence 442 4567799999999998 88877775 89999987652111 1111 1112 1246789999 999999
Q ss_pred EEeCCCcEEEEECC-CCccceEEeeeecccccceEE-EEee--CCEEE-EEeCCC----cEEEeeCCCCCCeeeeeeecC
Q 013717 314 SGACDRSILVWDRE-DSANHMVVTGALRGHGKAILC-LINV--AGLLM-SGSADR----TVRIWQRGSDGRFGCLAVLEG 384 (437)
Q Consensus 314 ~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~i~~-~~~~--~~~l~-~~~~dg----~i~iwd~~~~~~~~~~~~~~~ 384 (437)
+++.||.+++|++. +++ ....+..+...+.. +.++ ++.|+ ++..++ .|..||+.++. ...+.
T Consensus 328 ~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~- 398 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTGR----LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT- 398 (706)
T ss_dssp EECTTSSCEEEEEETTSC----EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-
T ss_pred EEccCCccEEEEEECCCC----EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-
Confidence 99999999999876 332 22334455555654 4555 44554 444454 56666776644 23333
Q ss_pred CCCCeeEEEEEccCCCCceEEEEEecCC---CcEEEEeeccCC
Q 013717 385 HTKPVKSLTAVTEEGQNGVVSVFSGSLD---GEIRAWQVSVSC 424 (437)
Q Consensus 385 h~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~ 424 (437)
|...+.+++|+|++.. ++++++.+ +.|++||+++++
T Consensus 399 ~~~~~~~~~~spdg~~----l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 399 PESGMHRTQLSPDGSA----IIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CSSSEEEEEECTTSSE----EEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCceEEEEECCCCCE----EEEEecCCCCCcEEEEEECCCCe
Confidence 6778999999999852 44444443 569999988764
No 138
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=2.1e-20 Score=168.14 Aligned_cols=266 Identities=13% Similarity=0.171 Sum_probs=173.9
Q ss_pred eEEEEeC--CCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEec---CCeEEEEeCCCCcccccccccCccccceeee
Q 013717 118 EINVYDR--TGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ---DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRF 191 (437)
Q Consensus 118 ~v~vwd~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 191 (437)
.|.+|++ ++++...+... .+...+..++|++++ |++++. ++.|.+|++.+++... +..
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~----~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~-~~~----------- 80 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLL----AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHK-LNT----------- 80 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE----EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEE-EEE-----------
T ss_pred CEEEEEEcCCCCeEEEeeee----eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEE-eee-----------
Confidence 5666655 45544443332 345677889999776 666655 6899999997654211 111
Q ss_pred cCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCC-c--ceEEEeec---------ccccEE
Q 013717 192 MLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASD-L--RCLESIKA---------HEDAVN 256 (437)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~-~--~~~~~~~~---------~~~~v~ 256 (437)
+..+...+..+++++ ++|++++ .++.|.+|++.. + +.+..+.. ....+.
T Consensus 81 ----------------~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~ 144 (347)
T 3hfq_A 81 ----------------VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH 144 (347)
T ss_dssp ----------------EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE
T ss_pred ----------------eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce
Confidence 123566778899988 6788777 789999999963 2 23333321 112488
Q ss_pred EEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEE-EeCCCcEEEEECCCCccce
Q 013717 257 AVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFS-GACDRSILVWDREDSANHM 333 (437)
Q Consensus 257 ~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~ 333 (437)
+++|+|+|+ +++...++.|.+||+.... .......+.. ....+..++|+|||+++++ ...++.|.+|++.......
T Consensus 145 ~~~~spdg~l~v~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~ 223 (347)
T 3hfq_A 145 YTDLTPDNRLAVIDLGSDKVYVYNVSDAG-QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF 223 (347)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECTTS-CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEECCCCcEEEEeCCCCEEEEEEECCCC-cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce
Confidence 999999999 6666678999999987322 1122222222 2346788999999996665 5568899999987522222
Q ss_pred EEeeeecccc------cceEEEEee--CCEE-EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceE
Q 013717 334 VVTGALRGHG------KAILCLINV--AGLL-MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV 404 (437)
Q Consensus 334 ~~~~~~~~~~------~~i~~~~~~--~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 404 (437)
.......... ..+..++++ +++| ++...++.|.+|++........+..+..+...+..++|+|++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~----- 298 (347)
T 3hfq_A 224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA----- 298 (347)
T ss_dssp EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS-----
T ss_pred EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC-----
Confidence 2222222211 235556665 4455 5566789999999974434456777777777899999999985
Q ss_pred EEEEec-CCCcEEEEeec
Q 013717 405 SVFSGS-LDGEIRAWQVS 421 (437)
Q Consensus 405 ~l~s~~-~dg~i~iw~~~ 421 (437)
+|++++ .++.|.+|+++
T Consensus 299 ~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 299 FVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred EEEEEEcCCCcEEEEEEe
Confidence 455554 56899999664
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=2.9e-21 Score=169.33 Aligned_cols=249 Identities=9% Similarity=0.040 Sum_probs=174.1
Q ss_pred EecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCC-CcccccccccCcccccee
Q 013717 114 ASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTP-TKHHKLKTTLPTVNDRLL 189 (437)
Q Consensus 114 ~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 189 (437)
++.+ .|++||+.+++...+. .|...|.+++|+|+. |+++ .++.|.+||+.+ ++.......
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~------~~~~~v~~~~~spdg~~l~~~-~~~~i~~~d~~~~~~~~~~~~~--------- 81 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVW------QTPELFEAPNWSPDGKYLLLN-SEGLLYRLSLAGDPSPEKVDTG--------- 81 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEE------EESSCCEEEEECTTSSEEEEE-ETTEEEEEESSSCCSCEECCCT---------
T ss_pred CCcceeEEEEeCCCCceeeec------cCCcceEeeEECCCCCEEEEE-cCCeEEEEeCCCCCCceEeccc---------
Confidence 3456 9999999986544322 478899999999776 5555 489999999988 654332210
Q ss_pred eecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE--CCCc--EEEEECCCcceEEEeecccccEEEEEEecC
Q 013717 190 RFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS--WDKS--LKIWRASDLRCLESIKAHEDAVNAVAVSAG 263 (437)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~--~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (437)
.+...+.+++|+| +++++++ .++. |..++..+++ ...+.. ...+..++|+|+
T Consensus 82 --------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spd 139 (297)
T 2ojh_A 82 --------------------FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPD 139 (297)
T ss_dssp --------------------TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTT
T ss_pred --------------------cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCC
Confidence 1246778899988 7888888 3344 4445555554 344443 334899999999
Q ss_pred Ce-EE-EEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEEeeeec
Q 013717 264 GT-VY-TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVVTGALR 340 (437)
Q Consensus 264 ~~-l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~ 340 (437)
++ ++ ++..++.+++|+++.... ....+..+...+.+++|+|+|++|+.++ .++.+.+|++...... ...+.
T Consensus 140 g~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~ 213 (297)
T 2ojh_A 140 GKSFTYCGIRDQVFDIYSMDIDSG---VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS---VERIT 213 (297)
T ss_dssp SSEEEEEEEETTEEEEEEEETTTC---CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---EEECC
T ss_pred CCEEEEEECCCCceEEEEEECCCC---cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC---cEEEe
Confidence 98 55 788899999998643321 2345556778899999999999888766 5899999998632222 22344
Q ss_pred ccccceEEEEeeCC--EEEEEeCC-----------CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717 341 GHGKAILCLINVAG--LLMSGSAD-----------RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF 407 (437)
Q Consensus 341 ~~~~~i~~~~~~~~--~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~ 407 (437)
.|...+..+.++++ +|++++.+ +.|++||+.+++ ...+..+.+|...+.+++|+|++. +|+
T Consensus 214 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~-----~l~ 287 (297)
T 2ojh_A 214 DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN-VETLFDLFGGQGTMNSPNWSPDGD-----EFA 287 (297)
T ss_dssp CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS-CEEEEEEEESTTTSCSCCBCTTSS-----EEE
T ss_pred cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC-ceeeeccCCCCcccccceECCCCC-----EEE
Confidence 56667777777654 77777765 569999998765 234555667888999999999985 466
Q ss_pred EecCC
Q 013717 408 SGSLD 412 (437)
Q Consensus 408 s~~~d 412 (437)
+++.|
T Consensus 288 ~~~~~ 292 (297)
T 2ojh_A 288 YVRYF 292 (297)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 55554
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1.2e-20 Score=168.72 Aligned_cols=266 Identities=11% Similarity=0.100 Sum_probs=183.3
Q ss_pred CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcc-cEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717 109 NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSG-SVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPT 183 (437)
Q Consensus 109 ~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (437)
++|++++.+ .|.+||..+++. +..+. .++.. .+..++|+++. ++++..++.|.+||+.+++....+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~--~~~~~--~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV--DKVIT--IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE--EEEEE--CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred cEEEEcCCCCeEEEEECCCCcE--EEEEE--cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence 578899988 999999998643 33331 12222 47889999764 45666789999999988764433221000
Q ss_pred cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE------------CCCcEEEEECCCcceEEEee
Q 013717 184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS------------WDKSLKIWRASDLRCLESIK 249 (437)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~------------~dg~i~iwd~~~~~~~~~~~ 249 (437)
..+...+.++++++ ++++++. .++.|.+||+.+++.+..+.
T Consensus 78 -------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 132 (337)
T 1pby_B 78 -------------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132 (337)
T ss_dssp -------------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred -------------------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe
Confidence 00112455788887 5777775 57999999999988887776
Q ss_pred cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC---------
Q 013717 250 AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR--------- 319 (437)
Q Consensus 250 ~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------- 319 (437)
. ...+.+++|+|+++ ++++ ++.|.+||+.... ....+..+.. ...+.|+|+|++++..+.++
T Consensus 133 ~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~----~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 133 A-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT----LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp C-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE----EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred C-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc----Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeec
Confidence 4 45688899999998 7776 6899999987543 3444443320 11237899998776554332
Q ss_pred ---------------cEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeee
Q 013717 320 ---------------SILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVL 382 (437)
Q Consensus 320 ---------------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 382 (437)
.|.+||+.+++.. ......+...+.++.++++ +++++ ++.|++||+.+++ .+..+
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~---~~~~~ 276 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA---SIKRV 276 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE---EEEEE
T ss_pred cccccccccccccccceEEEeCCCCCce---EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc---Cccee
Confidence 4689999887643 2223345556666666654 77777 7899999998765 44555
Q ss_pred cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 383 EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 383 ~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.. ...+.+++|+|++. +|++++.|+.|++||+.+++.
T Consensus 277 ~~-~~~~~~~~~s~dg~-----~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 277 PL-PHSYYSVNVSTDGS-----TVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EC-SSCCCEEEECTTSC-----EEEEESBSSEEEEEETTTCCE
T ss_pred cC-CCceeeEEECCCCC-----EEEEEcCCCcEEEEECcCCcE
Confidence 43 34678999999885 677778899999999988764
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=1.6e-19 Score=162.67 Aligned_cols=265 Identities=11% Similarity=0.057 Sum_probs=183.8
Q ss_pred CccCCeEEEEee--CCEEEEEec-------C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASS-------H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDC 162 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~-------d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg 162 (437)
.....+..++|+ ++++++++. + .|.+||..+++. ...+. ....+..++|++++ +++...++
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~----~~~~~~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV--TQAIH----NDLKPFGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE--EEEEE----ESSCCCSEEEETTTTEEEEEETTTT
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE--EEEEe----cCCCcceEEECCCCCEEEEEecCCC
Confidence 445678899999 778887772 5 899999998543 33331 23447788998654 45556689
Q ss_pred eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE--CCCcEEEEE
Q 013717 163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS--WDKSLKIWR 238 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~--~dg~i~iwd 238 (437)
.|.+||..+++....+..-..... -......+.++++++ +.+++++ .++.|.+||
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRT---------------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCC---------------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred EEEEEeCCCCeeEEEEecCCCccc---------------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 999999998865443321000000 000111367889987 6666665 478999999
Q ss_pred CCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC----ccccEEEEEEccCCCEEE
Q 013717 239 ASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK----HKSAVNALALSDDGTVLF 313 (437)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~ 313 (437)
..+++.+..+..+...+.+++|+|++. ++++..++.|.+||+.... ....+.. +...+..++|+|+|++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 171 GGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK----ILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp TTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE----EEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred CCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe----EEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 999998888875666688999999998 8888999999999987543 3333332 455688999999999777
Q ss_pred EEeC-CCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEE-eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeE
Q 013717 314 SGAC-DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSG-SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKS 391 (437)
Q Consensus 314 ~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 391 (437)
+++. ++.|.+||+.+++....+. .....-..+..++++++++ ..++.|.+||..+++ .+..+..+ ..+.+
T Consensus 247 ~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~---~~~~~~~~-~~~~~ 318 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNGNILAKVA----APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK---VVKTFDTP-THPNS 318 (353)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEE----CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTE---EEEEEECC-SEEEE
T ss_pred EEeCCCCEEEEEECCCCcEEEEEE----cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCe---EEEEEecC-CCCCe
Confidence 7665 4999999998876433222 2222334555566655544 478999999998866 55555543 46899
Q ss_pred EEEEccCC
Q 013717 392 LTAVTEEG 399 (437)
Q Consensus 392 l~~~~~~~ 399 (437)
++|+|++.
T Consensus 319 ~~~s~dg~ 326 (353)
T 3vgz_A 319 LALSADGK 326 (353)
T ss_dssp EEECTTSC
T ss_pred EEEcCCCC
Confidence 99999985
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=2.4e-20 Score=184.56 Aligned_cols=314 Identities=10% Similarity=0.024 Sum_probs=198.9
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccC---CeEEEEee--CCEEEEEec---------C-eEEEEe
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKL---PIGCIAVH--HNFLYAASS---------H-EINVYD 123 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~---~V~~l~~~--~~~l~s~~~---------d-~v~vwd 123 (437)
.++.++|....+++ +.||+|.+|+...... ...+ +|.. .|.+++|+ |++|++++. + .|.+||
T Consensus 20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTS-TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred cccEEcCCCcEEEE-eCCCCEEEEECCCCcE-EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 35677787776655 7899999999976543 3444 6654 49999999 899999876 3 688999
Q ss_pred CCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEe
Q 013717 124 RTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVR 201 (437)
Q Consensus 124 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (437)
+.+++...+.. ..+|...+..++|+|++ |+.++. +.|++||+.+++.......-.. .
T Consensus 98 ~~~~~~~~l~~---~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~--~--------------- 156 (723)
T 1xfd_A 98 IPHGDPQSLDP---PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE--G--------------- 156 (723)
T ss_dssp SSSCCCEECCC---TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT--T---------------
T ss_pred CCCCceEeccC---CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC--C---------------
Confidence 99875433332 24566678999999876 776665 8999999988764332221000 0
Q ss_pred eccceeeecCC---------CcEEEEEeCC--CeEEEEECCC----------------------------------cEEE
Q 013717 202 RHKKKLWIEHG---------DAVTGLAVNN--GLIYSVSWDK----------------------------------SLKI 236 (437)
Q Consensus 202 ~~~~~~~~~~~---------~~v~~~~~~~--~~l~~~~~dg----------------------------------~i~i 236 (437)
.++.++. ..+.+++|+| +.|++++.|+ .|++
T Consensus 157 ----~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~ 232 (723)
T 1xfd_A 157 ----VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV 232 (723)
T ss_dssp ----TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred ----ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence 0000111 1236777777 5666665442 7999
Q ss_pred EECCCcceEEEeecc------cccEEEEEEecCCe-EEEEeC----CCeEEEecCCCCcccceeeEEeeC-ccccE----
Q 013717 237 WRASDLRCLESIKAH------EDAVNAVAVSAGGT-VYTGSA----DRKIRVWAKPFNEKRHALIATLEK-HKSAV---- 300 (437)
Q Consensus 237 wd~~~~~~~~~~~~~------~~~v~~~~~~~~~~-l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i---- 300 (437)
||+.+++....+..+ ...+..++|+|||+ +++... +..|.+||+.++. ....+.. +...+
T Consensus 233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~~ 308 (723)
T 1xfd_A 233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV----CTKKHEDESEAWLHRQN 308 (723)
T ss_dssp EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC----EEEEEEEECSSCCCCCC
T ss_pred EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc----ceEEEEeccCCEEeccC
Confidence 999988865666543 56799999999999 555543 3579999987543 2222222 22333
Q ss_pred EEEEEccCCCEEEE--EeCCC------cEEEEEC-CCCcc--ceEEeeeecccccce---EEEEeeCCEEEEEeCC---C
Q 013717 301 NALALSDDGTVLFS--GACDR------SILVWDR-EDSAN--HMVVTGALRGHGKAI---LCLINVAGLLMSGSAD---R 363 (437)
Q Consensus 301 ~~~~~~~~~~~l~~--~~~dg------~i~i~d~-~~~~~--~~~~~~~~~~~~~~i---~~~~~~~~~l~~~~~d---g 363 (437)
..++|+|||+.|+. +..++ .|++||+ ..+.. ... +..+...+ .+++.+++.|+..+.+ +
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~----l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 384 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS----ITSGDWDVTKILAYDEKGNKIYFLSTEDLPR 384 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB----SCCSSSCEEEEEEEETTTTEEEEEESSSCTT
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE----eecCCeEEEeeeEEcCCCCEEEEEEcCCCCc
Confidence 37899999997775 45566 5777773 33320 221 22122222 2444556677655544 7
Q ss_pred cEEEeeCCCCCCeeeeeeecC---CCCCeeEEEEEccCCCCceEEEEEecCCC
Q 013717 364 TVRIWQRGSDGRFGCLAVLEG---HTKPVKSLTAVTEEGQNGVVSVFSGSLDG 413 (437)
Q Consensus 364 ~i~iwd~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~~l~s~~~dg 413 (437)
.++||++...... ....+.. |...+..++|+|++.. +++..+..+
T Consensus 385 ~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~spdg~~----l~~~~~~~~ 432 (723)
T 1xfd_A 385 RRQLYSANTVGNF-NRQCLSCDLVENCTYFSASFSHSMDF----FLLKCEGPG 432 (723)
T ss_dssp CCEEEEECSSTTC-CCBCSSTTSSSSCCCCEEEECTTSSE----EEEECCSSS
T ss_pred ceEEEEEeCCCCC-CcceecccccCCCCeEEEEECCCCCE----EEEEccCCC
Confidence 8999998754311 2223333 6777999999999863 555554443
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=7e-21 Score=187.87 Aligned_cols=282 Identities=9% Similarity=0.058 Sum_probs=185.2
Q ss_pred eEEEEeeCCEEEEEecCeEEEEeCCCCce--eeeeccccC-----------CCCcccEEEEEEeCCeEEEEecCCeEEEE
Q 013717 101 IGCIAVHHNFLYAASSHEINVYDRTGTTW--TSINTFNDN-----------DSSSGSVKSVTFCDGKIFTAHQDCKIRVW 167 (437)
Q Consensus 101 V~~l~~~~~~l~s~~~d~v~vwd~~~~~~--~~~~~~~~~-----------~~h~~~v~~l~~~~~~l~s~~~dg~i~iw 167 (437)
+..+.|.++.+++++.+.| +||+.+++. ..+...... ..+...|.+++|+++..+..+.++.|++|
T Consensus 28 ~~~~~w~g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~~~i~~~ 106 (706)
T 2z3z_A 28 VVGLQWMGDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGGLVGF 106 (706)
T ss_dssp CTTCEEETTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEETTEEEEE
T ss_pred CCCCcCcCCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEECCEEEEE
Confidence 4446666777777776767 999998754 333221100 00125699999998773333357999999
Q ss_pred eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC----
Q 013717 168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD---- 241 (437)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~---- 241 (437)
|+.+++..... .+...+.+++|+| +.|++ ..++.|++||+.+
T Consensus 107 d~~~~~~~~l~-------------------------------~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 107 DMLARKVTYLF-------------------------------DTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEG 154 (706)
T ss_dssp ETTTTEEEEEE-------------------------------CCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSC
T ss_pred ECCCCceEEcc-------------------------------CCcccccCCcCCCCCCEEEE-EECCeEEEEecCccccc
Confidence 99877543221 2555677889998 67777 4789999999998
Q ss_pred -cceEEEeeccccc--------------EEEEEEecCCe-EEEEe---------------------------------CC
Q 013717 242 -LRCLESIKAHEDA--------------VNAVAVSAGGT-VYTGS---------------------------------AD 272 (437)
Q Consensus 242 -~~~~~~~~~~~~~--------------v~~~~~~~~~~-l~~~~---------------------------------~d 272 (437)
++.......+... +.+++|+|||+ |++++ .+
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 7766544433332 48899999999 88776 44
Q ss_pred CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC-----cEEEEECCCCccceEEeeee-cccccce
Q 013717 273 RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR-----SILVWDREDSANHMVVTGAL-RGHGKAI 346 (437)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~-~~~~~~i 346 (437)
..|.+||+..... ..+.....+...+..++|+|||++|++++.++ .|++||+.+++....+.... ......+
T Consensus 235 ~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 235 VTVGIYHLATGKT--VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp EEEEEEETTTTEE--EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred eEEEEEECCCCce--EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 7899999875431 11111124667899999999999999987775 89999998873222222111 1111112
Q ss_pred E--EEEe--eCCEEEEEeCCCcEEEeeCC-CCCCeeeeeeecCCCCCeeE-EEEEccCCCCceEEEEEecCCC----cEE
Q 013717 347 L--CLIN--VAGLLMSGSADRTVRIWQRG-SDGRFGCLAVLEGHTKPVKS-LTAVTEEGQNGVVSVFSGSLDG----EIR 416 (437)
Q Consensus 347 ~--~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~l~s~~~dg----~i~ 416 (437)
. .+.+ ++.+++++..||.++||++. .++ .+..+..|...+.. ++|+|++.. ++++++.++ .|.
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~---~~~~l~~~~~~v~~~~~~spdg~~----l~~~~~~~~~~~~~l~ 385 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR---LIRQVTKGEWEVTNFAGFDPKGTR----LYFESTEASPLERHFY 385 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSC---EEEECCCSSSCEEEEEEECTTSSE----EEEEESSSCTTCBEEE
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCC---EEEecCCCCeEEEeeeEEcCCCCE----EEEEecCCCCceEEEE
Confidence 2 3444 55588999999999999886 333 56777788888887 799998863 556666665 566
Q ss_pred EEeeccCC
Q 013717 417 AWQVSVSC 424 (437)
Q Consensus 417 iw~~~~~~ 424 (437)
.|++.+++
T Consensus 386 ~~d~~~~~ 393 (706)
T 2z3z_A 386 CIDIKGGK 393 (706)
T ss_dssp EEETTCCC
T ss_pred EEEcCCCC
Confidence 66665553
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=8.9e-20 Score=187.20 Aligned_cols=305 Identities=10% Similarity=-0.016 Sum_probs=222.3
Q ss_pred ceeeccccccccccCCCceeEEecCCCcceeeeec-C-----------ccCCeEEEEee---CCEEEEEecCeEEEEeCC
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-G-----------HKLPIGCIAVH---HNFLYAASSHEINVYDRT 125 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~-----------h~~~V~~l~~~---~~~l~s~~~d~v~vwd~~ 125 (437)
...++|....++.. .++.|.+|+... .... .+ + |...|.+++|+ |++|++++.+.|.+|+..
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~~-~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~ 325 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPDT-EKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVS 325 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTT-CCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTT
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCCc-eEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCC
Confidence 34666777766655 588899998833 2222 44 4 45578999997 678888885599999998
Q ss_pred CCceeeeeccccCCCCcc-cEEEEEEeCCe--EEEEecCCeEE-EEeCCCCcccccccccCccccceeeecCCCCeeEEe
Q 013717 126 GTTWTSINTFNDNDSSSG-SVKSVTFCDGK--IFTAHQDCKIR-VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVR 201 (437)
Q Consensus 126 ~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~--l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (437)
++.... + ..|.. .+..++|+ +. |+.++.++.+. +|++.+++....
T Consensus 326 ~~~~~~---~---~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l------------------------ 374 (1045)
T 1k32_A 326 GTYVLK---V---PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF------------------------ 374 (1045)
T ss_dssp SSBEEE---C---SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC------------------------
T ss_pred CCceEE---c---cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe------------------------
Confidence 864332 2 34666 89999999 65 88888888888 889886642211
Q ss_pred eccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCC-----
Q 013717 202 RHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADR----- 273 (437)
Q Consensus 202 ~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg----- 273 (437)
.+|...+..++|+| ++|++++.++.|++||+.+++....+..|...+.+++|+|||+ |++++.++
T Consensus 375 -------~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 375 -------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD 447 (1045)
T ss_dssp -------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred -------cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccccc
Confidence 13777899999998 8899999999999999999998887778888999999999999 77776644
Q ss_pred -----eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc-------ce--------
Q 013717 274 -----KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN-------HM-------- 333 (437)
Q Consensus 274 -----~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~-------- 333 (437)
.|++||+.... ...+..|...+..++|+|||++|+.++.++...+|+...... ..
T Consensus 448 ~~~~~~i~l~d~~~g~-----~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1045)
T 1k32_A 448 GYVMQAIHVYDMEGRK-----IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 522 (1045)
T ss_dssp SCCEEEEEEEETTTTE-----EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred CCCCCeEEEEECCCCc-----EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCC
Confidence 89999987532 455667788889999999999999999888777776532211 00
Q ss_pred ------------------------EEeeeecccccceEEEEeeCC--EEEE-------------EeCCCcEEEeeCCCCC
Q 013717 334 ------------------------VVTGALRGHGKAILCLINVAG--LLMS-------------GSADRTVRIWQRGSDG 374 (437)
Q Consensus 334 ------------------------~~~~~~~~~~~~i~~~~~~~~--~l~~-------------~~~dg~i~iwd~~~~~ 374 (437)
.....+..|...+..+.++++ ++++ ......|.+||+.+++
T Consensus 523 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~ 602 (1045)
T 1k32_A 523 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK 602 (1045)
T ss_dssp CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred CCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCc
Confidence 001112234556667777665 4553 1234578888988766
Q ss_pred CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 375 RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 375 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
...+. ..+..++|+|++. +|++++.| .|++||+.+++
T Consensus 603 ----~~~l~---~~v~~~~~S~DG~-----~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 603 ----VTEVK---NNLTDLRLSADRK-----TVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp ----EEEEE---EEEEEEEECTTSC-----EEEEEETT-SCEEEEESSCT
T ss_pred ----EEEee---cCcceEEECCCCC-----EEEEEcCC-cEEEEeCccCc
Confidence 22222 5688999999985 67777766 89999998876
No 145
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=5e-19 Score=163.26 Aligned_cols=206 Identities=12% Similarity=0.091 Sum_probs=145.8
Q ss_pred cCCeEEEEee--CCEEEEEecCeEEEEeCCCCce--------eeeeccc--cCCCCcccEEEEEEeCCe--EE----EEe
Q 013717 98 KLPIGCIAVH--HNFLYAASSHEINVYDRTGTTW--------TSINTFN--DNDSSSGSVKSVTFCDGK--IF----TAH 159 (437)
Q Consensus 98 ~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~--------~~~~~~~--~~~~h~~~v~~l~~~~~~--l~----s~~ 159 (437)
...+..++++ +.++++++.+.+++|+...... ....... ....+...|.+++|+++. |+ +++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 3467888888 8889988878888887642100 0000000 001356789999999765 66 788
Q ss_pred cCCeEEEEeCCCCcccc--cccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcE
Q 013717 160 QDCKIRVWQLTPTKHHK--LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSL 234 (437)
Q Consensus 160 ~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i 234 (437)
.|+.|++||+.+..... ....+ .....+.+|...|.+++|+| .+|++++.||+|
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~---------------------~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPF---------------------AYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCS---------------------EEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCceEEEEEccccccCCcCCccee---------------------eeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 89999999987541000 00000 00122346899999999997 689999999999
Q ss_pred EEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-------ccccEEEEEEc
Q 013717 235 KIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-------HKSAVNALALS 306 (437)
Q Consensus 235 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-------~~~~i~~~~~~ 306 (437)
++||++++..+.....|...|.+++|+|+|. |++|+.||.|++||++ .. ....+.. |...+.+++|+
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~----~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ----EKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC----EEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc----ccccccCCcccCCCCceeEEEEEEe
Confidence 9999999877766677889999999999998 9999999999999986 22 2222222 23489999999
Q ss_pred cCCCEEEEE-eCCC------cEEEEECCCC
Q 013717 307 DDGTVLFSG-ACDR------SILVWDREDS 329 (437)
Q Consensus 307 ~~~~~l~~~-~~dg------~i~i~d~~~~ 329 (437)
+++.++++. ..|| .+++|+++..
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 988777543 3343 3899999865
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=4.3e-20 Score=177.95 Aligned_cols=264 Identities=8% Similarity=0.024 Sum_probs=182.2
Q ss_pred ccCCeEEEEee--CCEEEEEec-C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEec---CCeEEEEe
Q 013717 97 HKLPIGCIAVH--HNFLYAASS-H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ---DCKIRVWQ 168 (437)
Q Consensus 97 h~~~V~~l~~~--~~~l~s~~~-d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~---dg~i~iwd 168 (437)
+..+|.+++|+ |++||.++. + .++||++++++...+. ..+...+..+.|+|++ +++++. +...++|.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt-----~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN-----REPINSVLDPHYGVGRVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC-----SSCCSEECEECTTCSEEEEEEECSTTSCCEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee-----cccccccccccCCCCeEEEEeccCCCCcceEEEE
Confidence 46689999999 899999886 7 9999999775443332 1233689999999888 555554 45566665
Q ss_pred CCC--CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceE
Q 013717 169 LTP--TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCL 245 (437)
Q Consensus 169 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 245 (437)
++. ......+.. .+...+.++++++ ..+++.+.++.+.+||+.+++..
T Consensus 95 ~~~~~~g~~~~l~~-----------------------------~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~ 145 (582)
T 3o4h_A 95 VNTSRPGEEQRLEA-----------------------------VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR 145 (582)
T ss_dssp EETTSTTCCEECTT-----------------------------SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE
T ss_pred EeccCCCccccccC-----------------------------CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE
Confidence 543 211111111 1222244556666 44555555666669999988765
Q ss_pred EEeecccccEEEEEEecCCe-EEEEeCC----CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC-
Q 013717 246 ESIKAHEDAVNAVAVSAGGT-VYTGSAD----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR- 319 (437)
Q Consensus 246 ~~~~~~~~~v~~~~~~~~~~-l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg- 319 (437)
..... .. .+++|+|||+ +++++.+ +.|.+||+.++. ...+..+...+..++|+|||++|+++..++
T Consensus 146 ~l~~~-~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 146 ELARL-PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-----LRVFDSGEGSFSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp EEEEE-SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-----CEEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred EeecC-CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-----ceEeecCCCccccceECCCCCEEEEccCCCe
Confidence 55443 23 7899999999 7777776 789999987543 235667888899999999999999888888
Q ss_pred -cEEEEECCCCccceEEeeeecccccceEE----------EEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCC
Q 013717 320 -SILVWDREDSANHMVVTGALRGHGKAILC----------LINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKP 388 (437)
Q Consensus 320 -~i~i~d~~~~~~~~~~~~~~~~~~~~i~~----------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 388 (437)
.|++||+.+++.. .+.+|...+.. +++++.++++++.||.+++|++ ++ ... .+.+.
T Consensus 218 ~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~---~~~---~~~~~ 284 (582)
T 3o4h_A 218 ARLVTVDPRDGSVE-----DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GE---RVE---APQGN 284 (582)
T ss_dssp EEEEEECTTTCCEE-----ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TE---EEC---CCSSE
T ss_pred eEEEEEcCCCCcEE-----EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CC---eec---cCCCc
Confidence 8999999877533 23445444433 4445558899999999999999 33 332 33467
Q ss_pred eeEEEEEccCCCCceEEEEEecCCCc---EEEEeec
Q 013717 389 VKSLTAVTEEGQNGVVSVFSGSLDGE---IRAWQVS 421 (437)
Q Consensus 389 v~~l~~~~~~~~~~~~~l~s~~~dg~---i~iw~~~ 421 (437)
|.+++|+ ++ +++++++.+.. +.+|+..
T Consensus 285 v~~~~~s-dg-----~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 285 HGRVVLW-RG-----KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEE-TT-----EEEEEEEETTEEEEEEEETTC
T ss_pred eEEEEec-CC-----EEEEEEcCCCCCCeEEEEcCC
Confidence 8999999 65 47788777744 6666654
No 147
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=4.5e-20 Score=170.22 Aligned_cols=254 Identities=11% Similarity=0.080 Sum_probs=161.5
Q ss_pred cccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717 142 SGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA 219 (437)
Q Consensus 142 ~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (437)
...+..++++++. +++++.|+ +++|+....... ......... ...........+...|.+++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~~~~~------------~~~~~~~~~~~~~~~v~~l~ 99 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGDDPNK------------IVDKVQGLLVPMKFPIHHLA 99 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTCCTTC------------EEECCCCEEECCSSCEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---cccccCccc------------ccccCccccccCCCcccEEE
Confidence 3457888888554 77777777 899876422100 000000000 00000011124677899999
Q ss_pred eCC--CeEE----EEECCCcEEEEECCCc--------ce---EEEeecccccEEEEEEecC-Ce-EEEEeCCCeEEEecC
Q 013717 220 VNN--GLIY----SVSWDKSLKIWRASDL--------RC---LESIKAHEDAVNAVAVSAG-GT-VYTGSADRKIRVWAK 280 (437)
Q Consensus 220 ~~~--~~l~----~~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~ 280 (437)
|++ ++|+ +|+.|+.|++||+.++ +. +..+.+|...|.+++|+|+ +. |++++.||.|++||+
T Consensus 100 ~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~ 179 (434)
T 2oit_A 100 LSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV 179 (434)
T ss_dssp ECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred EcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence 998 7788 6788999999998765 22 3445578999999999998 55 999999999999999
Q ss_pred CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec---ccccceEEEEeeCC--E
Q 013717 281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR---GHGKAILCLINVAG--L 355 (437)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~--~ 355 (437)
+... ......+|...|.+++|+|+|++|++|+.||.|++||++ ++....+..... .|...+.++.|+++ +
T Consensus 180 ~~~~----~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 180 TETV----KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp SSSE----EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred CCCc----ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence 7652 344556688999999999999999999999999999998 332222221111 23458899999877 3
Q ss_pred E-EEEeCCCc------EEEeeCCCCCC--eeeeeeec-------CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 356 L-MSGSADRT------VRIWQRGSDGR--FGCLAVLE-------GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 356 l-~~~~~dg~------i~iwd~~~~~~--~~~~~~~~-------~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
+ +.+..||. +++|++...+. ......+. +...+-..+.+.++.+ .++++.+..+.|-+..
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~----l~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWD----LVLAASAASTEVSILA 330 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGT----EEEEEETTCSBCEEEE
T ss_pred EEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCC----EEEEecCCCCceeEEE
Confidence 3 23444543 89999986531 11111111 2223333344445553 3555555555565555
Q ss_pred e
Q 013717 420 V 420 (437)
Q Consensus 420 ~ 420 (437)
.
T Consensus 331 ~ 331 (434)
T 2oit_A 331 R 331 (434)
T ss_dssp E
T ss_pred e
Confidence 4
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=4.9e-19 Score=158.01 Aligned_cols=268 Identities=10% Similarity=0.083 Sum_probs=174.8
Q ss_pred cccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEec-C-eEEEEeCCCCceeeeeccccCCCCcc
Q 013717 68 VPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASS-H-EINVYDRTGTTWTSINTFNDNDSSSG 143 (437)
Q Consensus 68 ~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~-d-~v~vwd~~~~~~~~~~~~~~~~~h~~ 143 (437)
...+++.+.++.|.+|+............+...+ +++|+ +++|++++. + .|.+||..+++.. ...+ ..+..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~---~~~~~ 84 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-VVAI---QEGQS 84 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-EEEE---EECSS
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-EEec---ccCCC
Confidence 3456777889999999987654433333555556 99998 776776665 5 9999999986541 2222 23445
Q ss_pred cEEEEEEeCCe--EEEEecCC---eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 144 SVKSVTFCDGK--IFTAHQDC---KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 144 ~v~~l~~~~~~--l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
+..+++|+++. ++++..++ .|.+||+.+++....+. ......++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-------------------------------~~~~~~~~ 133 (331)
T 3u4y_A 85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-------------------------------IPYDAVGI 133 (331)
T ss_dssp CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-------------------------------CCTTEEEE
T ss_pred CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-------------------------------CCCCccce
Confidence 55559999765 66444442 89999998876443322 34456899
Q ss_pred EeCC--CeEE-EEECCCc-EEEEECCCcceEE----EeecccccEEEEEEecCCe-EE-EEeCCCeEEEecCCCCcccce
Q 013717 219 AVNN--GLIY-SVSWDKS-LKIWRASDLRCLE----SIKAHEDAVNAVAVSAGGT-VY-TGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 219 ~~~~--~~l~-~~~~dg~-i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~v~iwd~~~~~~~~~ 288 (437)
+|+| ++++ +...++. |.+|++.....+. ...........++|+|+|+ ++ ++..++.|.+||+..... ..
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~ 212 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-IT 212 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-CE
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-cc
Confidence 9998 4454 4456688 9999987643331 1113445689999999998 54 455689999999875442 11
Q ss_pred eeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceE--Eeeeecccccce-----EEEEeeCCEEEEE-
Q 013717 289 LIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMV--VTGALRGHGKAI-----LCLINVAGLLMSG- 359 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~i-----~~~~~~~~~l~~~- 359 (437)
.+..+. ....+..++|+|||++++++. .++.|.+||+.+++.... +...+..+.... .++.+++.+|+++
T Consensus 213 ~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 291 (331)
T 3u4y_A 213 LLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291 (331)
T ss_dssp EEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred eeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence 244444 346678999999999776654 578899999987654211 111111111111 3555556666554
Q ss_pred eCCCcEEEeeCCCC
Q 013717 360 SADRTVRIWQRGSD 373 (437)
Q Consensus 360 ~~dg~i~iwd~~~~ 373 (437)
..++.|++||+...
T Consensus 292 ~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 292 NISRELKVFTISGK 305 (331)
T ss_dssp TTTTEEEEEETTSC
T ss_pred CCCCcEEEEEecCC
Confidence 55679999999863
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=1.5e-19 Score=158.36 Aligned_cols=249 Identities=10% Similarity=-0.012 Sum_probs=174.7
Q ss_pred ccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecCeEEEEeCCC-CceeeeeccccCCCCcccEEEEE
Q 013717 73 KLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSHEINVYDRTG-TTWTSINTFNDNDSSSGSVKSVT 149 (437)
Q Consensus 73 s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~-~~~~~~~~~~~~~~h~~~v~~l~ 149 (437)
+.+.++.|.+|+..... ......|...|.+++|+ +++|++++.+.|.+||+.+ ++...+.. ..+...|.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK-MRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDT----GFATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTE-EEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCC----TTCCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCc-eeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecc----ccccccccceE
Confidence 34678999999987643 33344899999999999 8999998855999999988 65443332 12357889999
Q ss_pred EeCCe--EEEEe--cCCeEEEEeC--CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-
Q 013717 150 FCDGK--IFTAH--QDCKIRVWQL--TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN- 222 (437)
Q Consensus 150 ~~~~~--l~s~~--~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 222 (437)
|+++. |++++ .++...+|.+ .+++. ..+ .+...+..++|+|
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~-------------------------------~~~~~~~~~~~spd 139 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLM-------------------------------TKNLPSYWHGWSPD 139 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EEC-------------------------------CSSSSEEEEEECTT
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEe-------------------------------ecCCCccceEECCC
Confidence 99775 77777 3345555554 44331 111 1233488889998
Q ss_pred -CeEE-EEECCCcEEEEECCC-cceEEEeecccccEEEEEEecCCe-EEEEe-CCCeEEEecCCCCcccceeeEEeeCcc
Q 013717 223 -GLIY-SVSWDKSLKIWRASD-LRCLESIKAHEDAVNAVAVSAGGT-VYTGS-ADRKIRVWAKPFNEKRHALIATLEKHK 297 (437)
Q Consensus 223 -~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (437)
+.++ ++..++.+++|++.. ......+..+...+.+++|+|++. +++++ .++.+++|++.... .....+..+.
T Consensus 140 g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~ 216 (297)
T 2ojh_A 140 GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG---SSVERITDSA 216 (297)
T ss_dssp SSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS---SCEEECCCCS
T ss_pred CCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC---CCcEEEecCC
Confidence 5555 788899999998532 233455566778899999999998 66555 58999999875322 2345566677
Q ss_pred ccEEEEEEccCCCEEEEEeCC-----------CcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCC
Q 013717 298 SAVNALALSDDGTVLFSGACD-----------RSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADR 363 (437)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg 363 (437)
..+..++|+|+|++|++++.+ +.|++||+.+++... .....+|...+..+.|++ ++|++++.+.
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET--LFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE--EEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee--eeccCCCCcccccceECCCCCEEEEEEecc
Confidence 889999999999999988776 569999998765432 222345666777676664 4777666543
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=9e-19 Score=157.44 Aligned_cols=273 Identities=13% Similarity=0.148 Sum_probs=172.3
Q ss_pred CCceeEEecCCCc-ceee--eecCccCCeEEEEee--CCEEEEEec---C-eEEEEeCCCCceeeeeccccCCCCcccEE
Q 013717 76 PDETINFSSASHL-CINS--VQLGHKLPIGCIAVH--HNFLYAASS---H-EINVYDRTGTTWTSINTFNDNDSSSGSVK 146 (437)
Q Consensus 76 ~dg~i~~~~~~~~-~~~~--~~~~h~~~V~~l~~~--~~~l~s~~~---d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~ 146 (437)
.++.+.+|..+.. .... ....+...+..++|+ |+ |++++. + .|.+||+.++..+.+..+ ..+...+.
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~---~~~~~~p~ 89 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV---VAPGTPPA 89 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE---EEESCCCS
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee---ecCCCCCE
Confidence 3556777777542 2222 223667788899999 66 554443 5 999999987765555543 34667888
Q ss_pred EEEEeCCe--EEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-
Q 013717 147 SVTFCDGK--IFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN- 222 (437)
Q Consensus 147 ~l~~~~~~--l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 222 (437)
.++|++++ |++++ .++.|.+|++........+..+...... + ....+...+.+++++|
T Consensus 90 ~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~------p------------~~~~~~~~~~~~~~spd 151 (347)
T 3hfq_A 90 YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHG------P------------RPEQDGSHIHYTDLTPD 151 (347)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCC------S------------STTCSSCCEEEEEECTT
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCC------C------------CccccCCCceEEEECCC
Confidence 99999765 76666 7899999999643221111111000000 0 0001334688999998
Q ss_pred -CeEEEEECCCcEEEEECC-CcceEE--Eeec-ccccEEEEEEecCCe-EEE-EeCCCeEEEecCCCCcccceeeEEeeC
Q 013717 223 -GLIYSVSWDKSLKIWRAS-DLRCLE--SIKA-HEDAVNAVAVSAGGT-VYT-GSADRKIRVWAKPFNEKRHALIATLEK 295 (437)
Q Consensus 223 -~~l~~~~~dg~i~iwd~~-~~~~~~--~~~~-~~~~v~~~~~~~~~~-l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~ 295 (437)
+++++...++.|++||+. +++... .+.. .......++|+|+|+ +++ ...++.|.+|++.........+..+..
T Consensus 152 g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 231 (347)
T 3hfq_A 152 NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT 231 (347)
T ss_dssp SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence 655555568899999998 554332 2222 233678899999998 554 567899999998642222233333332
Q ss_pred cc------ccEEEEEEccCCCEEE-EEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeC-CCcE
Q 013717 296 HK------SAVNALALSDDGTVLF-SGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSA-DRTV 365 (437)
Q Consensus 296 ~~------~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-dg~i 365 (437)
.. ..+..++|+|||++|+ +...++.|.+|++.... .......+..+...+..++++ +++|++++. ++.|
T Consensus 232 ~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g-~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 310 (347)
T 3hfq_A 232 IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG-HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNA 310 (347)
T ss_dssp SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG-CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEE
T ss_pred cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC-cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcE
Confidence 22 4588999999999874 55568999999997432 222333444444555666665 447777765 4899
Q ss_pred EEeeCC
Q 013717 366 RIWQRG 371 (437)
Q Consensus 366 ~iwd~~ 371 (437)
.+|++.
T Consensus 311 ~v~~~d 316 (347)
T 3hfq_A 311 TLYARD 316 (347)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999554
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=2.3e-19 Score=160.41 Aligned_cols=268 Identities=9% Similarity=0.020 Sum_probs=179.3
Q ss_pred cccccCCCceeEEecCCCcceeeeec--CccC-CeEEEEee--CCEEE-EEecC-eEEEEeCCCCceeeeeccccCCCCc
Q 013717 70 SLQKLSPDETINFSSASHLCINSVQL--GHKL-PIGCIAVH--HNFLY-AASSH-EINVYDRTGTTWTSINTFNDNDSSS 142 (437)
Q Consensus 70 ~~~s~s~dg~i~~~~~~~~~~~~~~~--~h~~-~V~~l~~~--~~~l~-s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~ 142 (437)
.+++.+.++.|.+|+...... ...+ ++.. .+.+++|+ +++++ ++..+ .|.+||+.+++............|.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEE-EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEcCCCCeEEEEECCCCcE-EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 466778899999999976443 3344 4433 48889998 66654 55556 9999999886433322221001123
Q ss_pred ccEEEEEEeCCe--EEEEe------------cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717 143 GSVKSVTFCDGK--IFTAH------------QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW 208 (437)
Q Consensus 143 ~~v~~l~~~~~~--l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (437)
..+..++|++++ ++++. .++.|.+||+.+++....+.
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~----------------------------- 132 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE----------------------------- 132 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-----------------------------
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe-----------------------------
Confidence 367789999765 66664 57999999998775433222
Q ss_pred ecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeC-CC-----------
Q 013717 209 IEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSA-DR----------- 273 (437)
Q Consensus 209 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-dg----------- 273 (437)
....+.++++++ ++++++ ++.|.+||+.+++.+..+..+.. ...+.|+|++. ++..+. ++
T Consensus 133 --~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 207 (337)
T 1pby_B 133 --APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARK 207 (337)
T ss_dssp --CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred --CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccc
Confidence 234566788887 667766 68999999999988877764331 11237888887 444332 33
Q ss_pred ------------eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc
Q 013717 274 ------------KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG 341 (437)
Q Consensus 274 ------------~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 341 (437)
.|.+||+...... ...+..+...+..++|+|+|++++++ ++.|++||+.+++....+ ..
T Consensus 208 ~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~----~~ 278 (337)
T 1pby_B 208 DIDPADPTAYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV----PL 278 (337)
T ss_dssp TSCTTSGGGEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE----EC
T ss_pred ccccccccccccceEEEeCCCCCce---EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee----cC
Confidence 4689988765422 33344566778899999999999988 799999999876533222 11
Q ss_pred cccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC
Q 013717 342 HGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH 385 (437)
Q Consensus 342 ~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h 385 (437)
...+.++.++ +++|++++.++.|++||+.+++ .+..+..+
T Consensus 279 -~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~---~~~~~~~~ 320 (337)
T 1pby_B 279 -PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE---KKGQVDLP 320 (337)
T ss_dssp -SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC---EEEEEECG
T ss_pred -CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc---EEEEEEcC
Confidence 2234455555 5588888889999999999876 45555433
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=7.2e-20 Score=181.17 Aligned_cols=279 Identities=6% Similarity=-0.030 Sum_probs=183.3
Q ss_pred CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcc---cEEEEEEeCCe--EEEEecC---------
Q 013717 99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSG---SVKSVTFCDGK--IFTAHQD--------- 161 (437)
Q Consensus 99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~--l~s~~~d--------- 161 (437)
..+.+++|+ |+++++ +.| .|++||+.+++...+.. .|.. .|.+++|+|++ |++++.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~-----~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIE-----GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEEC-----TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEec-----cccccccccceEEECCCCCEEEEEecCccceeecce
Confidence 346788888 777766 566 99999999865443332 3443 59999999876 7777654
Q ss_pred CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEEC
Q 013717 162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRA 239 (437)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~ 239 (437)
+.|.+||+.+++.. .+... .+|...+..++|+| +.|+.++. +.|++||+
T Consensus 91 ~~i~~~d~~~~~~~-~l~~~---------------------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~ 141 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQ-SLDPP---------------------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAH 141 (723)
T ss_dssp SEEEEEESSSCCCE-ECCCT---------------------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESS
T ss_pred eeEEEEECCCCceE-eccCC---------------------------ccccccccccEECCCCCEEEEEEC-CeEEEEEC
Confidence 78899999987642 11111 12555578889998 68888776 79999999
Q ss_pred CCcceEEEeecccccE------------------EEEEEecCCe-EEEEeCCC---------------------------
Q 013717 240 SDLRCLESIKAHEDAV------------------NAVAVSAGGT-VYTGSADR--------------------------- 273 (437)
Q Consensus 240 ~~~~~~~~~~~~~~~v------------------~~~~~~~~~~-l~~~~~dg--------------------------- 273 (437)
.+++.......+...+ .+++|+|||+ |++++.++
T Consensus 142 ~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (723)
T 1xfd_A 142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (723)
T ss_dssp SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred CCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence 9988766655433333 7899999998 88776543
Q ss_pred -------eEEEecCCCCcccceeeEEeeC------ccccEEEEEEccCCCEEEEEeC----CCcEEEEECCCCccceEEe
Q 013717 274 -------KIRVWAKPFNEKRHALIATLEK------HKSAVNALALSDDGTVLFSGAC----DRSILVWDREDSANHMVVT 336 (437)
Q Consensus 274 -------~v~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~ 336 (437)
.|.+||+..... ...+.. +...+..++|+|||++|++... +..|++||+.+++......
T Consensus 222 G~~~~~~~l~~~d~~~~~~----~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 297 (723)
T 1xfd_A 222 GSENPSISLHVIGLNGPTH----DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE 297 (723)
T ss_dssp TSCCCEEEEEEEESSSSCC----CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred CCCCCeeEEEEEECCCCce----eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE
Confidence 789998875431 223333 2567899999999998876643 4679999998876433222
Q ss_pred eeecccccc------eEEEEeeCCEEEE--EeCCC------cEEEeeCCCCCCeeeeeeecCCCCCeeE-EEEEccCCCC
Q 013717 337 GALRGHGKA------ILCLINVAGLLMS--GSADR------TVRIWQRGSDGRFGCLAVLEGHTKPVKS-LTAVTEEGQN 401 (437)
Q Consensus 337 ~~~~~~~~~------i~~~~~~~~~l~~--~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~ 401 (437)
.. +... -..++++++.|+. +..++ .|++||...+....+...+..+...+.. ++|+|++..
T Consensus 298 ~~---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~- 373 (723)
T 1xfd_A 298 DE---SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNK- 373 (723)
T ss_dssp EE---CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTE-
T ss_pred ec---cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCE-
Confidence 11 2222 2344445664443 55677 5677773233310013444444445554 699999862
Q ss_pred ceEEEEEecCC--CcEEEEeeccC
Q 013717 402 GVVSVFSGSLD--GEIRAWQVSVS 423 (437)
Q Consensus 402 ~~~~l~s~~~d--g~i~iw~~~~~ 423 (437)
+++++..+ +.+++|+++..
T Consensus 374 ---l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 374 ---IYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp ---EEEEESSSCTTCCEEEEECSS
T ss_pred ---EEEEEcCCCCcceEEEEEeCC
Confidence 34455555 88999999754
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=6.7e-19 Score=158.56 Aligned_cols=241 Identities=10% Similarity=0.074 Sum_probs=171.7
Q ss_pred CcccEEEEEEeCCe--EEEEec-------CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 141 SSGSVKSVTFCDGK--IFTAHQ-------DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 141 h~~~v~~l~~~~~~--l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
....+..++|+++. +++++. ++.|.+||..+++....+. .
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------~ 87 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-------------------------------N 87 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-------------------------------E
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-------------------------------c
Confidence 34568899999764 555553 6789999999876444332 2
Q ss_pred CCcEEEEEeCC--CeEE-EEECCCcEEEEECCCcceEEEeecccc---------cEEEEEEecCCe-EEEEe--CCCeEE
Q 013717 212 GDAVTGLAVNN--GLIY-SVSWDKSLKIWRASDLRCLESIKAHED---------AVNAVAVSAGGT-VYTGS--ADRKIR 276 (437)
Q Consensus 212 ~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~-l~~~~--~dg~v~ 276 (437)
...+..+++++ ++++ +...++.|.+||..+++.+..+..+.. .+.+++|+|++. ++++. .++.|.
T Consensus 88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW 167 (353)
T ss_dssp SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence 23456677877 5444 445579999999999998888775432 278999999998 55554 478999
Q ss_pred EecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CC
Q 013717 277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AG 354 (437)
Q Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 354 (437)
+||+... +....+..+...+..++|+|+|+++++++.++.|.+||+.+++..........++...+..+.++ ++
T Consensus 168 ~~d~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 243 (353)
T 3vgz_A 168 VVDGGNI----KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ 243 (353)
T ss_dssp EEETTTT----EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred EEcCCCC----ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence 9988654 34555554556688999999999999999999999999988764433322222344455556655 55
Q ss_pred EEEEEe-CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 355 LLMSGS-ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 355 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
++++++ .++.|.+||..+++ .+..+.... ...++|+|++.. ++++...++.|.+||+.+++.
T Consensus 244 ~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~--~~~~~~s~dg~~----l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 244 RAFITDSKAAEVLVVDTRNGN---ILAKVAAPE--SLAVLFNPARNE----AYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp EEEEEESSSSEEEEEETTTCC---EEEEEECSS--CCCEEEETTTTE----EEEEETTTTEEEEEETTTTEE
T ss_pred EEEEEeCCCCEEEEEECCCCc---EEEEEEcCC--CceEEECCCCCE----EEEEECCCCeEEEEECCCCeE
Confidence 555555 45999999998877 444444332 257899999863 666777899999999987653
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=1.6e-17 Score=150.15 Aligned_cols=266 Identities=9% Similarity=0.076 Sum_probs=169.5
Q ss_pred eEEEEeC--CCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC----CeEEEEeCCCC-cccccccccCccccce
Q 013717 118 EINVYDR--TGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD----CKIRVWQLTPT-KHHKLKTTLPTVNDRL 188 (437)
Q Consensus 118 ~v~vwd~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d----g~i~iwd~~~~-~~~~~~~~~~~~~~~~ 188 (437)
.|.+|++ .+++...+... +...+..++|++++ |++++.+ +.|.+|+++.. .....+...
T Consensus 28 ~i~~~~~d~~~g~~~~~~~~-----~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~------- 95 (361)
T 3scy_A 28 GIYTFRFNEETGESLPLSDA-----EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ------- 95 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEE-----ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-------
T ss_pred CEEEEEEeCCCCCEEEeecc-----cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-------
Confidence 7888866 45545444442 56777889999775 7777765 79999998753 111111111
Q ss_pred eeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEE-CCCcEEEEECCCcceEEEe----e--c--------ccc
Q 013717 189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVS-WDKSLKIWRASDLRCLESI----K--A--------HED 253 (437)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~----~--~--------~~~ 253 (437)
..+......++++.+++++++ .++.|.+|++.....+..+ . + +..
T Consensus 96 --------------------~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~ 155 (361)
T 3scy_A 96 --------------------KTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMP 155 (361)
T ss_dssp --------------------ECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSC
T ss_pred --------------------ccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCC
Confidence 124456677777557677666 6889999999754332211 1 1 123
Q ss_pred cEEEEEEecCCe-EEEEe-CCCeEEEecCCCCcc----c-cee----eEEeeCccccEEEEEEccCCCEEEEEe-CCCcE
Q 013717 254 AVNAVAVSAGGT-VYTGS-ADRKIRVWAKPFNEK----R-HAL----IATLEKHKSAVNALALSDDGTVLFSGA-CDRSI 321 (437)
Q Consensus 254 ~v~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~----~-~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i 321 (437)
.+.+++|+|+|+ ++++. .++.|.+|++..... . ... ..........+..++|+|||+++++++ .++.|
T Consensus 156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 235 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV 235 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence 468899999998 55544 589999998865432 1 111 112223456678999999999887777 68999
Q ss_pred EEEECCCCccceEE-eeeecccccceEEEEee--CCEEEEEeC--CCcEEEeeCCC-CCCeeeeeeecCCCCCeeEEEEE
Q 013717 322 LVWDREDSANHMVV-TGALRGHGKAILCLINV--AGLLMSGSA--DRTVRIWQRGS-DGRFGCLAVLEGHTKPVKSLTAV 395 (437)
Q Consensus 322 ~i~d~~~~~~~~~~-~~~~~~~~~~i~~~~~~--~~~l~~~~~--dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~~ 395 (437)
.+|++.+++..... ......+......+.++ +++|+++.. ++.|.+|++.. ......+..+.. ...+.+++|+
T Consensus 236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s 314 (361)
T 3scy_A 236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT 314 (361)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence 99999865322111 11122223334566665 457766655 48999999962 223345555554 5678899999
Q ss_pred ccCCCCceEEEEEec-CCCcEEEEeec
Q 013717 396 TEEGQNGVVSVFSGS-LDGEIRAWQVS 421 (437)
Q Consensus 396 ~~~~~~~~~~l~s~~-~dg~i~iw~~~ 421 (437)
|++. +|++++ .++.|.+|+++
T Consensus 315 pdg~-----~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 315 PNGK-----YLLVACRDTNVIQIFERD 336 (361)
T ss_dssp TTSC-----EEEEEETTTTEEEEEEEC
T ss_pred CCCC-----EEEEEECCCCCEEEEEEE
Confidence 9985 455555 78999998765
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=4.2e-17 Score=147.36 Aligned_cols=295 Identities=11% Similarity=0.090 Sum_probs=179.9
Q ss_pred CCCceeEEecCCCc-c--eeeeecCccCCeEEEEee--CCEEEEEec-----CeEEEEeCCC--CceeeeeccccCCCCc
Q 013717 75 SPDETINFSSASHL-C--INSVQLGHKLPIGCIAVH--HNFLYAASS-----HEINVYDRTG--TTWTSINTFNDNDSSS 142 (437)
Q Consensus 75 s~dg~i~~~~~~~~-~--~~~~~~~h~~~V~~l~~~--~~~l~s~~~-----d~v~vwd~~~--~~~~~~~~~~~~~~h~ 142 (437)
+.++.|.+|..+.. . ...... +...+..++|+ +++|++++. +.|.+|+++. +..+.+... ..+.
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~---~~~~ 99 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ---KTMG 99 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE---ECSS
T ss_pred CCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe---ccCC
Confidence 34678888887432 2 222223 77888889999 888888887 2899998865 444444443 2345
Q ss_pred ccEEEEEEeCCeEEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 143 GSVKSVTFCDGKIFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 143 ~~v~~l~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
.....+++..+.|++++ .++.|.+|++................. ........+...+.+++|+
T Consensus 100 ~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g----------------~~~~~~~~~~~~~~~~~~s 163 (361)
T 3scy_A 100 ADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKG----------------SGPDKERQTMPHLHCVRIT 163 (361)
T ss_dssp SCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC----------------CCSCTTTCSSCCEEEEEEC
T ss_pred CCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccC----------------CCCCccccCCCcceEEEEC
Confidence 67778888333355554 688999999975443222211000000 0000001234457889999
Q ss_pred C--CeEEEEE-CCCcEEEEECCCcc-------eE-----EE-eecccccEEEEEEecCCe-EEEEe-CCCeEEEecCCCC
Q 013717 222 N--GLIYSVS-WDKSLKIWRASDLR-------CL-----ES-IKAHEDAVNAVAVSAGGT-VYTGS-ADRKIRVWAKPFN 283 (437)
Q Consensus 222 ~--~~l~~~~-~dg~i~iwd~~~~~-------~~-----~~-~~~~~~~v~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~ 283 (437)
| +++++++ .++.|.+|++.... .. .. ..........++|+|+|+ ++++. .++.|.+||+..+
T Consensus 164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 164 PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 8 5565555 48899999887543 11 11 123455688999999998 66665 6899999998633
Q ss_pred cccceeeEEee---CccccEEEEEEccCCCEEEEEeCC--CcEEEEECCCCccceEEeeeecccccceEEEEee--CCEE
Q 013717 284 EKRHALIATLE---KHKSAVNALALSDDGTVLFSGACD--RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLL 356 (437)
Q Consensus 284 ~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l 356 (437)
. ...+..+. .+...+..++|+|||++|+++..+ +.|.+|++............+.. ...+..++++ +++|
T Consensus 244 ~--~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l 320 (361)
T 3scy_A 244 M--LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYL 320 (361)
T ss_dssp E--EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEE
T ss_pred c--eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEE
Confidence 2 12222222 233557899999999998776654 89999999632222222332322 3344555555 5577
Q ss_pred EEEe-CCCcEEEeeCC--CCCCeeeeeee-cCCCCCeeEEEEE
Q 013717 357 MSGS-ADRTVRIWQRG--SDGRFGCLAVL-EGHTKPVKSLTAV 395 (437)
Q Consensus 357 ~~~~-~dg~i~iwd~~--~~~~~~~~~~~-~~h~~~v~~l~~~ 395 (437)
++++ .++.|.+|++. +++ ..... ..+...+.||.|.
T Consensus 321 ~~~~~~~~~v~v~~~d~~~g~---~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 321 LVACRDTNVIQIFERDQATGL---LTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEETTTTEEEEEEECTTTCC---EEECSCCEECSSEEEEEEE
T ss_pred EEEECCCCCEEEEEEECCCCc---EeecceeeeCCCCeEEEEc
Confidence 7776 67899997654 443 22221 1244578888886
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=3.9e-18 Score=168.63 Aligned_cols=324 Identities=9% Similarity=0.012 Sum_probs=199.9
Q ss_pred ceeeccccccccccCCCceeEEecCCCcceeeeec-CccC---CeEEEEee--CCEEEEEec---------C-eEEEEeC
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKL---PIGCIAVH--HNFLYAASS---------H-EINVYDR 124 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~---~V~~l~~~--~~~l~s~~~---------d-~v~vwd~ 124 (437)
++.+.|....+. .+.|++|.+|+..... ....+ +|.. .|.+++|+ |++|+.++. + .|++||+
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQ-SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCC-EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCc-EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 456667664333 4569999999997654 34444 4443 49999999 899998876 6 9999999
Q ss_pred CCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEee
Q 013717 125 TGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRR 202 (437)
Q Consensus 125 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (437)
.+++......+ ...+..++|+|++ |+.+ .++.|++|++.+++....... .
T Consensus 98 ~~g~~~~~~~l------~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~~--~------------------- 149 (719)
T 1z68_A 98 SNGEFVRGNEL------PRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITFN--G------------------- 149 (719)
T ss_dssp TTTEECCSSCC------CSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCCC--C-------------------
T ss_pred CCCccccceec------CcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEecC--C-------------------
Confidence 98643111222 2468889999876 6666 488999999988764332110 0
Q ss_pred ccceeeecCCCc---------EEEEEeCC--CeEEEEECCC----------------------------------cEEEE
Q 013717 203 HKKKLWIEHGDA---------VTGLAVNN--GLIYSVSWDK----------------------------------SLKIW 237 (437)
Q Consensus 203 ~~~~~~~~~~~~---------v~~~~~~~--~~l~~~~~dg----------------------------------~i~iw 237 (437)
....++.++... ..+++|+| +.|++++.|. .|++|
T Consensus 150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 000111223222 24788888 6787776542 78999
Q ss_pred ECCCcceE--EE------eecccccEEEEEEecCCe-EEEEeCC----CeEEEec----CCCCcccceeeE-EeeCcccc
Q 013717 238 RASDLRCL--ES------IKAHEDAVNAVAVSAGGT-VYTGSAD----RKIRVWA----KPFNEKRHALIA-TLEKHKSA 299 (437)
Q Consensus 238 d~~~~~~~--~~------~~~~~~~v~~~~~~~~~~-l~~~~~d----g~v~iwd----~~~~~~~~~~~~-~~~~~~~~ 299 (437)
|+.+++.. .. +..+...+..++|+||++ +++.... ..|.+|| +.++... .... ....+...
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-~~~~~~~~~~~~~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP-KTQEHIEESRTGW 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC-GGGEEEEECSSSC
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE-EEEecccccCCce
Confidence 99988753 11 224777899999999988 4443322 2488888 5433211 1110 01345555
Q ss_pred EE-----EEEEccCCCEEEE--EeCCC--cEEEEECCCCccceEEeeeecccccceEEEEe-eCCEEEEEeC-----CCc
Q 013717 300 VN-----ALALSDDGTVLFS--GACDR--SILVWDREDSANHMVVTGALRGHGKAILCLIN-VAGLLMSGSA-----DRT 364 (437)
Q Consensus 300 i~-----~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~-----dg~ 364 (437)
+. .+.|+|||+.|+. ...+| .|++||+.+++ .. .+..+...+..+.+ +++.|+..+. ++.
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~----~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~ 383 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AI----QITSGKWEAINIFRVTQDSLFYSSNEFEEYPGR 383 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CE----ECSCSSSCEEEEEEECSSEEEEEESCGGGCTTC
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eE----ecccCceEEEEEEEEeCCEEEEEEecCCCCCce
Confidence 65 7899999996554 44555 56777776654 11 12233333433222 5555555554 488
Q ss_pred EEEeeCCC--CC-Ceeeeee-ecCCCCCeeEEEEEccCCCCceEEEEEecCC--CcEEEEeeccCC
Q 013717 365 VRIWQRGS--DG-RFGCLAV-LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD--GEIRAWQVSVSC 424 (437)
Q Consensus 365 i~iwd~~~--~~-~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d--g~i~iw~~~~~~ 424 (437)
.++|.+.. +. ...++.. +.+|...+..+.|+|++.. ++++++.+ ..+.+|++.+++
T Consensus 384 ~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~----l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 384 RNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKY----YALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp BEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSS----EEEEECCBSSCEEEEECSSSCC
T ss_pred EEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCE----EEEEcCCCCCCeEEEEECCCCC
Confidence 99998764 21 1122211 2336678889999998864 55565554 568889887664
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=7.1e-18 Score=151.55 Aligned_cols=232 Identities=8% Similarity=0.046 Sum_probs=155.4
Q ss_pred EEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--Ce
Q 013717 149 TFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GL 224 (437)
Q Consensus 149 ~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 224 (437)
++.++. +++++.++.|.+||+.+++....+.. +....+..+++++ +.
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-----------------------------~~~~~~~~~~~s~dg~~ 56 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-----------------------------PDKFGPGTAMMAPDNRT 56 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-----------------------------SSCCSSCEEEECTTSSE
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-----------------------------CCCCCCceeEECCCCCE
Confidence 445443 88889999999999998765433321 1112466788887 44
Q ss_pred EE-EEECCCcEEEEECCCcceEEEeecc------cccEEEEEEecCCe-EEEEeCC------------CeEEEecCCCCc
Q 013717 225 IY-SVSWDKSLKIWRASDLRCLESIKAH------EDAVNAVAVSAGGT-VYTGSAD------------RKIRVWAKPFNE 284 (437)
Q Consensus 225 l~-~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~-l~~~~~d------------g~v~iwd~~~~~ 284 (437)
++ +...++.|.+||+.+++.+..+... ...+..++|+|+|+ +++++.+ +.|.+||+.+..
T Consensus 57 ~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 57 AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred EEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 54 5557899999999999888777632 23378899999998 7777755 899999987532
Q ss_pred ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc-----------------------
Q 013717 285 KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG----------------------- 341 (437)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------------------- 341 (437)
. ...+..+. +...+.+++|+|+|+ +++++ +.|++||+.+++....+.....+
T Consensus 137 ~-~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 137 E-AKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp G-BCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred c-cceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence 1 22233333 334688999999999 55554 34999999876533222110000
Q ss_pred -----------------------------------------cccceEEEE--e-eCCEEEEEeCCCcEEEeeCCCCCCee
Q 013717 342 -----------------------------------------HGKAILCLI--N-VAGLLMSGSADRTVRIWQRGSDGRFG 377 (437)
Q Consensus 342 -----------------------------------------~~~~i~~~~--~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 377 (437)
+...+..+. + ++++++++ ++.|++||+.+++
T Consensus 212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~--- 286 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK--- 286 (349)
T ss_dssp EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE---
T ss_pred eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe---
Confidence 000122233 3 44577777 8899999999865
Q ss_pred eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 378 CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 378 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.+..+.. ...+.+++|+|++. +|++++.++.|++||+++++.
T Consensus 287 ~~~~~~~-~~~~~~~~~s~dg~-----~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 287 LIKAANL-DHTYYCVAFDKKGD-----KLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp EEEEEEC-SSCCCEEEECSSSS-----CEEEESBSSEEEEEETTTTEE
T ss_pred EEEEEcC-CCCccceEECCCCC-----EEEEecCCCeEEEEeccccce
Confidence 4444443 34578999999985 466678889999999987653
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=5.7e-17 Score=146.62 Aligned_cols=274 Identities=9% Similarity=0.062 Sum_probs=167.9
Q ss_pred EEEEEec--C-eEEEEeC--CCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC-CCccccccccc
Q 013717 110 FLYAASS--H-EINVYDR--TGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT-PTKHHKLKTTL 181 (437)
Q Consensus 110 ~l~s~~~--d-~v~vwd~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~-~~~~~~~~~~~ 181 (437)
+|+.|+. + .|.+|++ .+++...+.... .+....+..++|++++ |++++.+ .|.+|++. +++...... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~--~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-~ 79 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTE--IPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-H 79 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEE--CCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE-E
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEc--cCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE-e
Confidence 3455553 2 5777654 555444443321 1233467889999765 7777777 99999987 554322111 0
Q ss_pred CccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--C--eEEEEE-------------CCCcEEEEECC-Ccc
Q 013717 182 PTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--G--LIYSVS-------------WDKSLKIWRAS-DLR 243 (437)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--~l~~~~-------------~dg~i~iwd~~-~~~ 243 (437)
..+ +....++++| + +++++. .+|.+.+|++. +++
T Consensus 80 ---------------------------~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~ 131 (365)
T 1jof_A 80 ---------------------------PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK 131 (365)
T ss_dssp ---------------------------ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC
T ss_pred ---------------------------ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc
Confidence 001 1123466666 3 233442 68999999997 466
Q ss_pred eEEEee----cccccEEEEEEecCCe-EEEEe-CCCeEEEecCC-CCcccceeeEEee--CccccEEEEEEccCCCEEEE
Q 013717 244 CLESIK----AHEDAVNAVAVSAGGT-VYTGS-ADRKIRVWAKP-FNEKRHALIATLE--KHKSAVNALALSDDGTVLFS 314 (437)
Q Consensus 244 ~~~~~~----~~~~~v~~~~~~~~~~-l~~~~-~dg~v~iwd~~-~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~ 314 (437)
....+. .+...+.+++|+|+|+ ++++. .++.|.+||+. .+. ...+..+. .+...+..++|+|||++|++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~--~~~~~~~~~~~~g~~p~~~~~spdg~~l~v 209 (365)
T 1jof_A 132 LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE--VELVGSVDAPDPGDHPRWVAMHPTGNYLYA 209 (365)
T ss_dssp EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC--EEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC--EEEeeeEecCCCCCCCCEeEECCCCCEEEE
Confidence 554443 2456799999999998 66655 46899999986 332 12223333 23567899999999999888
Q ss_pred EeC-CCcEEEEECCC--Cccce--EEeeeec----cccc------ceEEEE-ee--CCEEEEEeCC-C-----cEEEeeC
Q 013717 315 GAC-DRSILVWDRED--SANHM--VVTGALR----GHGK------AILCLI-NV--AGLLMSGSAD-R-----TVRIWQR 370 (437)
Q Consensus 315 ~~~-dg~i~i~d~~~--~~~~~--~~~~~~~----~~~~------~i~~~~-~~--~~~l~~~~~d-g-----~i~iwd~ 370 (437)
++. ++.|.+|++.. ++... .....+. +|.. .+..+. ++ +++|+++..+ + .|.+|++
T Consensus 210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 775 78999998753 33211 1111111 2221 355666 55 4577666543 2 8999999
Q ss_pred C-CCCCeeeee-eecCCCCCeeEEEEEc---cCCCCceEEEEEecC-CCcEEEEeeccC
Q 013717 371 G-SDGRFGCLA-VLEGHTKPVKSLTAVT---EEGQNGVVSVFSGSL-DGEIRAWQVSVS 423 (437)
Q Consensus 371 ~-~~~~~~~~~-~~~~h~~~v~~l~~~~---~~~~~~~~~l~s~~~-dg~i~iw~~~~~ 423 (437)
. +++ ...+. ....+...+..++|+| ++. +|++++. ++.|++|+++..
T Consensus 290 ~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~-----~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 290 RDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDE-----WMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTT-----EEEEECSSSCEEEEEEEETT
T ss_pred CCCCC-EEEeeeeeecCCCCcccceecCCCcCCC-----EEEEEEcCCCeEEEEEEchh
Confidence 6 333 22211 2334555678899999 564 6777765 589999998765
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=1e-16 Score=146.25 Aligned_cols=284 Identities=8% Similarity=0.024 Sum_probs=180.5
Q ss_pred ceeeeec-CccCCeEE-----EEee--CCEEEEEec-C---eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--
Q 013717 89 CINSVQL-GHKLPIGC-----IAVH--HNFLYAASS-H---EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-- 154 (437)
Q Consensus 89 ~~~~~~~-~h~~~V~~-----l~~~--~~~l~s~~~-d---~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 154 (437)
......+ .|...... .+|+ |++|+.++. + .|.+||+.+++...+. .++...+..+.|+|+.
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-----~~~~~~~~~~~~spdg~~ 94 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-----EGRGDNTFGGFLSPDDDA 94 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-----CSSCBCSSSCEECTTSSE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-----eCCCCCccceEEcCCCCE
Confidence 3444455 66666665 7788 888888886 4 4888999886544333 2355555567899776
Q ss_pred EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE--eCC--CeEEE---
Q 013717 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA--VNN--GLIYS--- 227 (437)
Q Consensus 155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~--~~l~~--- 227 (437)
|+.++.++.|++||+.+++...... .+...+.... +++ ..++.
T Consensus 95 l~~~~~~~~l~~~d~~~g~~~~~~~------------------------------~~~~~~~~~~~~~~~dg~~l~~~~~ 144 (388)
T 3pe7_A 95 LFYVKDGRNLMRVDLATLEENVVYQ------------------------------VPAEWVGYGTWVANSDCTKLVGIEI 144 (388)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEEE------------------------------CCTTEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcceeeee------------------------------chhhcccccceeECCCCCeeccccc
Confidence 8888889999999999876433222 1222222222 233 33332
Q ss_pred -------------------EECCCcEEEEECCCcceEEEeecccccEEEEEEec-CCe-EEEEeCC------CeEEEecC
Q 013717 228 -------------------VSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGT-VYTGSAD------RKIRVWAK 280 (437)
Q Consensus 228 -------------------~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~d------g~v~iwd~ 280 (437)
...++.|.+||+.+++... +..+...+..++|+| +|+ |+....+ ..|.++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 145 RREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp EGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred cCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence 2244789999999886544 444667799999999 998 7666653 36777776
Q ss_pred CCCcccceeeEEeeCcc--ccEEEEEEccCCCEEEEEeC-CC----cEEEEECCCCccceEEeeeecccc-----cceEE
Q 013717 281 PFNEKRHALIATLEKHK--SAVNALALSDDGTVLFSGAC-DR----SILVWDREDSANHMVVTGALRGHG-----KAILC 348 (437)
Q Consensus 281 ~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~-----~~i~~ 348 (437)
.... ...+..+. ..+..++|+|||+.|+..+. ++ .|++||+.+++.... ....++. ..-..
T Consensus 224 ~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 224 DGTN-----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL--TSMPACSHLMSNYDGSL 296 (388)
T ss_dssp TSCC-----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE--EEECCEEEEEECTTSSE
T ss_pred CCCc-----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE--EcCCCceeeeecCCCCe
Confidence 5332 22233333 35778999999997765443 22 399999988754322 1222211 01125
Q ss_pred EEeeCCEEEEE---------eCCCcEEEeeCCCCCCeeeeeeecCCCC-----------CeeEEEEEccCCCCceEEEEE
Q 013717 349 LINVAGLLMSG---------SADRTVRIWQRGSDGRFGCLAVLEGHTK-----------PVKSLTAVTEEGQNGVVSVFS 408 (437)
Q Consensus 349 ~~~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~~~~~~l~s 408 (437)
+++++..|+.. ..+..|++||+.+++ +..+..|.. .+..++|+|++.. ++++
T Consensus 297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~----l~~~ 368 (388)
T 3pe7_A 297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ----ILFT 368 (388)
T ss_dssp EEEEECCC------------CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSE----EEEE
T ss_pred EccCCCcceeEeeeccccccCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccCCCCCCE----EEEE
Confidence 67777755543 456689999998754 344444554 5788999999863 5666
Q ss_pred ecCCCcEEEEeeccC
Q 013717 409 GSLDGEIRAWQVSVS 423 (437)
Q Consensus 409 ~~~dg~i~iw~~~~~ 423 (437)
+..+|...||.++-.
T Consensus 369 s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 369 SDVHGKPALYLATLP 383 (388)
T ss_dssp ECTTSSCEEEEEECC
T ss_pred ecCCCceeEEEEECC
Confidence 667888888887654
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=1.5e-16 Score=142.82 Aligned_cols=273 Identities=9% Similarity=0.011 Sum_probs=169.5
Q ss_pred eeccccccccccCCCceeEEecCCCcceeeeec--CccCCeEEEEee--CCEEE-EEecC-eEEEEeCCCCceeeeeccc
Q 013717 63 QTLPSVPSLQKLSPDETINFSSASHLCINSVQL--GHKLPIGCIAVH--HNFLY-AASSH-EINVYDRTGTTWTSINTFN 136 (437)
Q Consensus 63 ~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~--~h~~~V~~l~~~--~~~l~-s~~~d-~v~vwd~~~~~~~~~~~~~ 136 (437)
.+.+....+++.+.++.|.+|+..... ....+ +....+..++|+ +++++ ++..+ .|.+||+.+++.......
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~- 83 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDT-VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL- 83 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTE-EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES-
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCc-EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc-
Confidence 445566778888899999999987643 44444 333367889998 66655 44456 999999998643322222
Q ss_pred cCCCC-----cccEEEEEEeCCe--EEEEecC------------CeEEEEeCCCCcccccccccCccccceeeecCCCCe
Q 013717 137 DNDSS-----SGSVKSVTFCDGK--IFTAHQD------------CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSY 197 (437)
Q Consensus 137 ~~~~h-----~~~v~~l~~~~~~--l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (437)
.+ ...+..++|++++ +++++.+ +.|.+||+.+++........
T Consensus 84 ---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------- 144 (349)
T 1jmx_B 84 ---SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF---------------- 144 (349)
T ss_dssp ---CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE----------------
T ss_pred ---ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec----------------
Confidence 12 3447889999765 7777654 89999999876533322211
Q ss_pred eEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccc-----------------------
Q 013717 198 VTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHED----------------------- 253 (437)
Q Consensus 198 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------- 253 (437)
.+...+.+++|++ ..+++++ +.|.+||+.+++.+..+.....
T Consensus 145 ------------~~~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (349)
T 1jmx_B 145 ------------PMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 210 (349)
T ss_dssp ------------ECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred ------------cCCCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE
Confidence 1334578888988 3366654 4499999999988877653210
Q ss_pred -cEEEEEEecCCe-E-EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCC
Q 013717 254 -AVNAVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDS 329 (437)
Q Consensus 254 -~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~ 329 (437)
....+++++++. . ........+..+|...+.. ....+..+...+..++|+| +|++++++ ++.|++||+.++
T Consensus 211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~ 285 (349)
T 1jmx_B 211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT---HTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR 285 (349)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCE---EEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT
T ss_pred EeeeeeeecCCCcCCccccccceeEEEEeccCCcE---EecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC
Confidence 234566665442 0 0000011112233332211 1112223556788999999 99999988 889999999876
Q ss_pred ccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeec
Q 013717 330 ANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLE 383 (437)
Q Consensus 330 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 383 (437)
+....+. .++ .+.+++++ +++|++++.++.|++||..+++ .+..+.
T Consensus 286 ~~~~~~~---~~~--~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~---~~~~~~ 333 (349)
T 1jmx_B 286 KLIKAAN---LDH--TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE---KVKNIK 333 (349)
T ss_dssp EEEEEEE---CSS--CCCEEEECSSSSCEEEESBSSEEEEEETTTTE---EEEEEE
T ss_pred eEEEEEc---CCC--CccceEECCCCCEEEEecCCCeEEEEeccccc---eeeeee
Confidence 5332221 122 23455554 5577778889999999998865 455444
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=1e-17 Score=161.36 Aligned_cols=227 Identities=10% Similarity=0.058 Sum_probs=159.4
Q ss_pred CcccEEEEEEeCCe--EEEEec-CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717 141 SSGSVKSVTFCDGK--IFTAHQ-DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG 217 (437)
Q Consensus 141 h~~~v~~l~~~~~~--l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (437)
+..+|.+++|++|+ |++++. ||+++||++++++...... .+...+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~------------------------------~~~~~~~~ 69 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR------------------------------EPINSVLD 69 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS------------------------------SCCSEECE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec------------------------------cccccccc
Confidence 45689999999764 887776 9999999986654322211 13357889
Q ss_pred EEeCC-CeEEEEEC---CCcEEEEECCC---cceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccce
Q 013717 218 LAVNN-GLIYSVSW---DKSLKIWRASD---LRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 218 ~~~~~-~~l~~~~~---dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~ 288 (437)
+.|+| +.+++++. +...++|.+.. +... .+.. ...+...+|+|+++ +++...++.+.+||+.++.
T Consensus 70 ~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~---- 143 (582)
T 3o4h_A 70 PHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG---- 143 (582)
T ss_dssp ECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE----
T ss_pred ccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc----
Confidence 99998 55565654 45556655432 2222 3332 22344668888875 4444455556699886542
Q ss_pred eeEEeeCccccEEEEEEccCCCEEEEEeCC----CcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCC
Q 013717 289 LIATLEKHKSAVNALALSDDGTVLFSGACD----RSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSAD 362 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~d 362 (437)
... +..+.. .+++|+|||++|++++.+ +.|++||+.+++.. .+..|...+..+.|+++ +|+++..+
T Consensus 144 ~~~-l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~~~~~~~~~~~SpDG~~l~~~~~~ 215 (582)
T 3o4h_A 144 LRE-LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDSGEGSFSSASISPGMKVTAGLETA 215 (582)
T ss_dssp EEE-EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-----EECCSSCEEEEEEECTTSCEEEEEECS
T ss_pred EEE-eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-----EeecCCCccccceECCCCCEEEEccCC
Confidence 222 222222 789999999999988877 78999999877532 23556677777777655 88888888
Q ss_pred C--cEEEeeCCCCCCeeeeeeecCCCCCeeEEE--------EEccCCCCceEEEEEecCCCcEEEEee
Q 013717 363 R--TVRIWQRGSDGRFGCLAVLEGHTKPVKSLT--------AVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 363 g--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~--------~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
+ .|++||+.+++ .. .+.+|...+..++ |+|++ . ++++++.||.+++|++
T Consensus 216 ~~~~i~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~----~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 216 REARLVTVDPRDGS---VE-DLELPSKDFSSYRPTAITWLGYLPDG-R----LAVVARREGRSAVFID 274 (582)
T ss_dssp SCEEEEEECTTTCC---EE-ECCCSCSHHHHHCCSEEEEEEECTTS-C----EEEEEEETTEEEEEET
T ss_pred CeeEEEEEcCCCCc---EE-EccCCCcChhhhhhccccceeEcCCC-c----EEEEEEcCCcEEEEEE
Confidence 8 89999999876 34 6777888888778 99998 3 8999999999999999
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=2.2e-17 Score=163.17 Aligned_cols=273 Identities=8% Similarity=0.046 Sum_probs=174.5
Q ss_pred EEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcc---cEEEEEEeCCe--EEEEec---------CCeEE
Q 013717 103 CIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSG---SVKSVTFCDGK--IFTAHQ---------DCKIR 165 (437)
Q Consensus 103 ~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~--l~s~~~---------dg~i~ 165 (437)
+++|+ +++++++ .+ .|++||+.+++...+.. .|.. .+.+++|+|++ |++++. ++.|+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILS-----NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEEC-----HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEc-----cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 56777 6555544 56 99999999975544332 2333 48999999876 776665 78999
Q ss_pred EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc
Q 013717 166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR 243 (437)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 243 (437)
+||+.+++...... ....+..++|+| +.|+.+. ++.|++||+.+++
T Consensus 94 ~~d~~~g~~~~~~~-------------------------------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~ 141 (719)
T 1z68_A 94 IYDLSNGEFVRGNE-------------------------------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP 141 (719)
T ss_dssp EEETTTTEECCSSC-------------------------------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred EEECCCCcccccee-------------------------------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCC
Confidence 99999886421011 123577889999 6777775 7899999999887
Q ss_pred eEEEee-cccccE-----------------EEEEEecCCe-EEEEeCCC-------------------------------
Q 013717 244 CLESIK-AHEDAV-----------------NAVAVSAGGT-VYTGSADR------------------------------- 273 (437)
Q Consensus 244 ~~~~~~-~~~~~v-----------------~~~~~~~~~~-l~~~~~dg------------------------------- 273 (437)
...... ++...| .+++|+|||+ |++++.|.
T Consensus 142 ~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~ 221 (719)
T 1z68_A 142 PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKN 221 (719)
T ss_dssp CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCC
T ss_pred cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCC
Confidence 654332 222222 4899999998 88877552
Q ss_pred ---eEEEecCCCCccc--ceee--EEeeCccccEEEEEEccCCCEEEEEeCC----CcEEEEE----CCCCccceEEeee
Q 013717 274 ---KIRVWAKPFNEKR--HALI--ATLEKHKSAVNALALSDDGTVLFSGACD----RSILVWD----REDSANHMVVTGA 338 (437)
Q Consensus 274 ---~v~iwd~~~~~~~--~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~~~ 338 (437)
.|++||+...... .... ..+..+...+..++|+||++++++.... ..|.+|| +.+++........
T Consensus 222 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~ 301 (719)
T 1z68_A 222 PVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI 301 (719)
T ss_dssp CEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE
T ss_pred CeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecc
Confidence 7889988754321 0000 1233577789999999998777764432 3488899 7665433221100
Q ss_pred ecccccceE-----E--EEeeCCEEE--EEeCCC--cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717 339 LRGHGKAIL-----C--LINVAGLLM--SGSADR--TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF 407 (437)
Q Consensus 339 ~~~~~~~i~-----~--~~~~~~~l~--~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~ 407 (437)
..+|...+. . ++++++.|+ +...+| .|.+||+.+++ ...+..+...+..+.+. ++. .+++
T Consensus 302 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~----~i~~ 372 (719)
T 1z68_A 302 EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQD----SLFY 372 (719)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSS----EEEE
T ss_pred cccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCC----EEEE
Confidence 023444433 3 444555333 454555 56777776644 34555666678888887 554 3555
Q ss_pred EecC----CCcEEEEeecc
Q 013717 408 SGSL----DGEIRAWQVSV 422 (437)
Q Consensus 408 s~~~----dg~i~iw~~~~ 422 (437)
++.. ++.+++|.+..
T Consensus 373 ~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 373 SSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EESCGGGCTTCBEEEEEEC
T ss_pred EEecCCCCCceEEEEEEeC
Confidence 5554 58899999875
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=4e-15 Score=134.42 Aligned_cols=247 Identities=11% Similarity=0.089 Sum_probs=156.0
Q ss_pred CccCCeEEEEee--CCEEEEEecCeEEEEeCC-CCceeeeeccccCCCCcccEEEEEEeCCe----EEEEe---------
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSHEINVYDRT-GTTWTSINTFNDNDSSSGSVKSVTFCDGK----IFTAH--------- 159 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~s~~--------- 159 (437)
++...+..++|+ +++|++++.+.|.+|++. +++....... ..+ +.+.+++|++++ ++++.
T Consensus 37 ~~~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~---~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 37 PQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASH---PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEE---ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred CCCCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEe---ecC-CCCccEEECCCCCEEEEEEecCCcceeccc
Confidence 344578899998 888988887899999997 6544332221 111 224457888654 23442
Q ss_pred ----cCCeEEEEeCCC-CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC-C
Q 013717 160 ----QDCKIRVWQLTP-TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW-D 231 (437)
Q Consensus 160 ----~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-d 231 (437)
.+|.+.+|++.. ++....+.... ..+...+.+++|+| ++++++.. +
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~--------------------------~~~~~~~~~~~~spdG~~l~~~~~~~ 166 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLEKNVQNYE--------------------------YQENTGIHGMVFDPTETYLYSADLTA 166 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEEEEEEE--------------------------CCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred eeecCCceEEEEccCCCCcCcceEeeEE--------------------------eCCCCcceEEEECCCCCEEEEEcCCC
Confidence 689999999974 43221111000 02456789999998 56777654 6
Q ss_pred CcEEEEECC-CcceE--EEee--cccccEEEEEEecCCe-EEEEe-CCCeEEEecCCCCcccce----eeEEee----Cc
Q 013717 232 KSLKIWRAS-DLRCL--ESIK--AHEDAVNAVAVSAGGT-VYTGS-ADRKIRVWAKPFNEKRHA----LIATLE----KH 296 (437)
Q Consensus 232 g~i~iwd~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~----~~~~~~----~~ 296 (437)
+.|++||+. +++.. ..+. .+...+..++|+|+|+ ++++. .++.|.+|+++....... .+..+. ++
T Consensus 167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~ 246 (365)
T 1jof_A 167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR 246 (365)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB
T ss_pred CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCc
Confidence 899999998 67653 2333 2356799999999998 66665 478999998753221111 111121 11
Q ss_pred cc------cEEEEE-EccCCCEEEEEeCCC------cEEEEECC-CCccceEEeeeecccc--cceEEEEe---eCCEEE
Q 013717 297 KS------AVNALA-LSDDGTVLFSGACDR------SILVWDRE-DSANHMVVTGALRGHG--KAILCLIN---VAGLLM 357 (437)
Q Consensus 297 ~~------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~~~~~~~~~~--~~i~~~~~---~~~~l~ 357 (437)
.. .+..++ |+|||++|+++..+. .|.+|++. +++ ..........+. ..-.++++ ++++|+
T Consensus 247 ~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~ 325 (365)
T 1jof_A 247 DPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMA 325 (365)
T ss_dssp CTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEE
T ss_pred ccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEE
Confidence 22 588999 999999988776533 89999996 333 221111121122 22345566 577888
Q ss_pred EEeCC-CcEEEeeCCCC
Q 013717 358 SGSAD-RTVRIWQRGSD 373 (437)
Q Consensus 358 ~~~~d-g~i~iwd~~~~ 373 (437)
+++.+ +.|++|++...
T Consensus 326 v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 326 ITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EECSSSCEEEEEEEETT
T ss_pred EEEcCCCeEEEEEEchh
Confidence 88764 89999998764
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=4.8e-14 Score=122.81 Aligned_cols=244 Identities=11% Similarity=0.137 Sum_probs=163.1
Q ss_pred CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.++-..+.+++++++. +++...++.|.+||.+ ++....+..... -.++...+.
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~------------------------~~~~~~~p~ 80 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK------------------------RDSQLLYPN 80 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS------------------------STTCBSSEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC------------------------CcccccCce
Confidence 3566789999999655 5565788999999987 332222110000 012445688
Q ss_pred EEEe-CC-CeEEEEEC--CCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717 217 GLAV-NN-GLIYSVSW--DKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI 290 (437)
Q Consensus 217 ~~~~-~~-~~l~~~~~--dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~ 290 (437)
++++ .+ ..++++.. ++.|.+|| .+++.+..+. .+...+..+++++++. +++...++.|.+||... ..+
T Consensus 81 ~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----~~~ 154 (286)
T 1q7f_A 81 RVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-----NVL 154 (286)
T ss_dssp EEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-----CEE
T ss_pred EEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-----CEE
Confidence 9999 34 56666653 89999999 5677776664 2345789999999999 55556789999998642 233
Q ss_pred EEee--CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCC-cE
Q 013717 291 ATLE--KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADR-TV 365 (437)
Q Consensus 291 ~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg-~i 365 (437)
..+. .+...+..++++++|+++++...++.|++||... +....+ ...++...+..+++++ +++++...++ .|
T Consensus 155 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~--~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i 231 (286)
T 1q7f_A 155 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQI--GGEGITNYPIGVGINSNGEILIADNHNNFNL 231 (286)
T ss_dssp EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEE--SCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEE--ccCCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence 3333 3445689999999999888877899999999753 211111 1122234566676654 4667666675 99
Q ss_pred EEeeCCCCCCeeeeeeecCCC--CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717 366 RIWQRGSDGRFGCLAVLEGHT--KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 366 ~iwd~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 426 (437)
++||.. ++ .+..+..+. ..+.++++.|++ +++++ +.|++|++|++....|.
T Consensus 232 ~~~~~~-g~---~~~~~~~~~~~~~~~~i~~~~~g-----~l~vs-~~~~~v~v~~~~~~~pv 284 (286)
T 1q7f_A 232 TIFTQD-GQ---LISALESKVKHAQCFDVALMDDG-----SVVLA-SKDYRLYIYRYVQLAPV 284 (286)
T ss_dssp EEECTT-SC---EEEEEEESSCCSCEEEEEEETTT-----EEEEE-ETTTEEEEEECSCCCCT
T ss_pred EEECCC-CC---EEEEEcccCCCCcceeEEECCCC-----cEEEE-CCCCeEEEEEccccccc
Confidence 999965 33 344444333 347899999987 35666 57999999998766554
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.72 E-value=3.2e-15 Score=147.87 Aligned_cols=338 Identities=9% Similarity=-0.003 Sum_probs=188.2
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCe-----EEEEee--CCEEEEEecC----------eEEE
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPI-----GCIAVH--HNFLYAASSH----------EINV 121 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V-----~~l~~~--~~~l~s~~~d----------~v~v 121 (437)
.++.+.|....+++. |++|.+|+...... ...+ +|.... ..++|+ |++|+.++.+ .+.+
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNS-SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCE-EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCce-EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 356788888777764 99999999976544 3445 665432 336677 8999998874 4569
Q ss_pred EeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCcccc-------------
Q 013717 122 YDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVND------------- 186 (437)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------- 186 (437)
||+.+++... + ..|...+...+|+|++ |+.+ .|+.|.+|++.+++..+... .+...
T Consensus 97 ~d~~~~~~~~---l---~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~--~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 97 YDLNKRQLIT---E---ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITW--TGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EETTTTEECC---S---SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCS--CCBTTTEEESBCCHHHHH
T ss_pred EECCCCcEEE---c---ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcC--CCCccceecCcccccccc
Confidence 9999975433 2 3467789999999876 6665 57899999998876433221 11000
Q ss_pred ------ceeeecCCCCeeEEeecc---ceeee--------cCCCcEEEEEeCCCeEEEEE--CCCcEEEEECCC---cc-
Q 013717 187 ------RLLRFMLPNSYVTVRRHK---KKLWI--------EHGDAVTGLAVNNGLIYSVS--WDKSLKIWRASD---LR- 243 (437)
Q Consensus 187 ------~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~v~~~~~~~~~l~~~~--~dg~i~iwd~~~---~~- 243 (437)
....+......+...... ...+. .+...+..+.+.. .|. ....|++||+.+ ++
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~----~G~~~~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK----AGAVNPTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB----TTSCCCEEEEEEEETTSCCSSSC
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC----CcCcCCeeEEEEEECCCCCCCCc
Confidence 001122222223222110 00000 0112222222221 001 112688999998 73
Q ss_pred -eEEEee------cccccEEEEEEecCCe-EEEEeC----CCeEEEecCCCCcccc--eeeEEe--eCccccEE-----E
Q 013717 244 -CLESIK------AHEDAVNAVAVSAGGT-VYTGSA----DRKIRVWAKPFNEKRH--ALIATL--EKHKSAVN-----A 302 (437)
Q Consensus 244 -~~~~~~------~~~~~v~~~~~~~~~~-l~~~~~----dg~v~iwd~~~~~~~~--~~~~~~--~~~~~~i~-----~ 302 (437)
....+. ++...+..++|+|||+ ++.... +..|.+||+.++.... .....+ ..+...+. .
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~ 323 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE 323 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence 223333 2677899999999999 554432 3479999987654100 001111 33444433 6
Q ss_pred EEEccCCCEEE-EEeC-C--CcEEEEECCCCccceEEeeeecccccceEE-EEeeCCEEE-EEeC----CCcEEEeeCCC
Q 013717 303 LALSDDGTVLF-SGAC-D--RSILVWDREDSANHMVVTGALRGHGKAILC-LINVAGLLM-SGSA----DRTVRIWQRGS 372 (437)
Q Consensus 303 ~~~~~~~~~l~-~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~-~~~~----dg~i~iwd~~~ 372 (437)
..|+|||+.|+ ..+. + ..|++||+.++.... +......+.. +.++++.|+ ++.. .+...||.+..
T Consensus 324 p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-----lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-----ITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp CEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-----SCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred ceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-----cccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence 88999999876 5553 3 468888887654221 1222333333 336666444 4443 24455554432
Q ss_pred CCCeeeeeeec----CCCCCeeEEEEEccCCCCceEEEEEecCC--CcEEEEeeccC
Q 013717 373 DGRFGCLAVLE----GHTKPVKSLTAVTEEGQNGVVSVFSGSLD--GEIRAWQVSVS 423 (437)
Q Consensus 373 ~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~~~~~l~s~~~d--g~i~iw~~~~~ 423 (437)
... .....+. +....+....|+|++.. ++++.+.. ..+.+++...+
T Consensus 399 ~g~-~~~~~lt~~~~~~~~~~~~~~~S~dg~~----~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 399 IDY-TKVTCLSCELNPERCQYYSVSFSKEAKY----YQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp TEE-EEEEESSTTTSTTTBCBEEEEECTTSSE----EEEEECSBSSCEEEEEETTTT
T ss_pred CCC-CcceeeccccCCCCCceEEEEECCCCCE----EEEEeCCCCCCEEEEEECCCC
Confidence 221 1111232 23467889999999863 55555443 35667766544
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=1.2e-14 Score=142.17 Aligned_cols=311 Identities=11% Similarity=0.056 Sum_probs=186.0
Q ss_pred ceeecccccccccc--CCCceeEEecCCCcceeeeecCccCCeE---------EEEee----CCE-EEEEec-C-eEEEE
Q 013717 61 SLQTLPSVPSLQKL--SPDETINFSSASHLCINSVQLGHKLPIG---------CIAVH----HNF-LYAASS-H-EINVY 122 (437)
Q Consensus 61 ~~~~~~~~~~~~s~--s~dg~i~~~~~~~~~~~~~~~~h~~~V~---------~l~~~----~~~-l~s~~~-d-~v~vw 122 (437)
.+.+.+..-.+++. +.++...+|.............|...+. ...|+ |++ |+.++. + .|.+|
T Consensus 28 ~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~ 107 (662)
T 3azo_A 28 CVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAF 107 (662)
T ss_dssp EEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEE
T ss_pred eeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEE
Confidence 34455555455555 5578888888643343333336666665 55454 777 776654 4 78888
Q ss_pred eCC--C-CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC----------CeEEEEeCCC------Cccccccccc
Q 013717 123 DRT--G-TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD----------CKIRVWQLTP------TKHHKLKTTL 181 (437)
Q Consensus 123 d~~--~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d----------g~i~iwd~~~------~~~~~~~~~~ 181 (437)
++. + +....+.... ...|...+..++|+|++ |++++.+ ..|.+||+.+ ++......
T Consensus 108 ~~~~~g~~~~~~l~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~-- 184 (662)
T 3azo_A 108 EPDAPGGAVPRPLTPVS-AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD-- 184 (662)
T ss_dssp CTTSTTCCCCEECSCCC-CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC--
T ss_pred cCCCCCCCCCEeccCCc-cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe--
Confidence 876 3 4333332210 01167789999999775 7777766 5899999987 43221110
Q ss_pred CccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECC--------CcEEEEECC-Cc---ceEEE
Q 013717 182 PTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD--------KSLKIWRAS-DL---RCLES 247 (437)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d--------g~i~iwd~~-~~---~~~~~ 247 (437)
.+...+..++|+| ++|+.++.+ ..|++||+. ++ +....
T Consensus 185 ----------------------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l 236 (662)
T 3azo_A 185 ----------------------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL 236 (662)
T ss_dssp ----------------------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE
T ss_pred ----------------------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe
Confidence 1345667788988 778877754 379999998 56 44444
Q ss_pred eecccccEEEEEEecCCe-EEEEeCCC--eEEEecCCCCcccceeeEEeeCcccc--------EEEEEEccCCCEEEEEe
Q 013717 248 IKAHEDAVNAVAVSAGGT-VYTGSADR--KIRVWAKPFNEKRHALIATLEKHKSA--------VNALALSDDGTVLFSGA 316 (437)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~-l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~ 316 (437)
...+...+..++|+|||+ ++++..++ .|.+||+.... .......+... +..++|+|++++++++.
T Consensus 237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~----~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~ 312 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA----ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG 312 (662)
T ss_dssp EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC----EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc----eeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence 444578899999999999 67777778 56666553322 22111222111 56789999999999999
Q ss_pred CCCcEEEE--ECCCCccceEEeeeecccccceEEE-EeeCC--EEEEEeCCC--cEEEeeCCCCCCeeeeeeecCCCCCe
Q 013717 317 CDRSILVW--DREDSANHMVVTGALRGHGKAILCL-INVAG--LLMSGSADR--TVRIWQRGSDGRFGCLAVLEGHTKPV 389 (437)
Q Consensus 317 ~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~--~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v 389 (437)
. +.++|| |+.+++ ...+..+...+..+ +++++ ++++++.+. .|.++|+.+++ .......|...+
T Consensus 313 ~-~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~---~~~l~~~~~~~~ 383 (662)
T 3azo_A 313 K-GAAVLGILDPESGE-----LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR---ARTIGARHTDPV 383 (662)
T ss_dssp S-SSCEEEEEETTTTE-----EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC---EEEEESCCCCSS
T ss_pred c-CccEEEEEECCCCc-----EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc---eEEeecCCcccC
Confidence 8 999999 554432 22345566667777 78877 334445554 45555666654 222223443333
Q ss_pred eEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717 390 KSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 390 ~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
....+.+.. .+.+.+..+..|..|-+
T Consensus 384 ~~~~~~~~~-----~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 384 DPAYYPEPQ-----IRTFTAPDGREIHAHIY 409 (662)
T ss_dssp CGGGSCCCE-----EEEEECTTSCEEEEEEE
T ss_pred CccccCcce-----EEEEEcCCCCEEEEEEE
Confidence 332232222 23444444446666654
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=1.6e-13 Score=119.42 Aligned_cols=238 Identities=12% Similarity=0.176 Sum_probs=157.6
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CC-eEEEEec--CCeEEEEe
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DG-KIFTAHQ--DCKIRVWQ 168 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~--dg~i~iwd 168 (437)
+|-..+.+++++ ++++++...+ .|.+||.+..............++...+..+++. ++ .++.+.. ++.|.+||
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 566778999998 7777777777 9999998853222222111112455678999994 44 4555553 88999999
Q ss_pred CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEE
Q 013717 169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLE 246 (437)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~ 246 (437)
. +++....+. ..+...+.++++++ +++++...++.|.+||. .++.+.
T Consensus 107 ~-~g~~~~~~~-----------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~ 155 (286)
T 1q7f_A 107 Q-YGQFVRKFG-----------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLH 155 (286)
T ss_dssp T-TSCEEEEEC-----------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEE
T ss_pred C-CCcEEEEec-----------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEE
Confidence 4 444322211 01345678999987 55555566889999996 456666
Q ss_pred Eee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCc--cccEEEEEEccCCCEEEEEeCCC-c
Q 013717 247 SIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH--KSAVNALALSDDGTVLFSGACDR-S 320 (437)
Q Consensus 247 ~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg-~ 320 (437)
.+. .+...+..+++++++. +++...++.|++||... ..+..+... ...+..++++++|+++++...++ .
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~ 230 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN 230 (286)
T ss_dssp EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE
Confidence 654 3445689999999999 56666789999998643 234444332 35789999999999888887776 9
Q ss_pred EEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717 321 ILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSD 373 (437)
Q Consensus 321 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~ 373 (437)
|.+||.. ++....+.. ......+.+++++++ ++++ +.|+.|++|++...
T Consensus 231 i~~~~~~-g~~~~~~~~--~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 231 LTIFTQD-GQLISALES--KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECTT-SCEEEEEEE--SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEECCC-CCEEEEEcc--cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 9999964 332222211 112223556666644 5444 67999999998653
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=1.8e-14 Score=128.05 Aligned_cols=199 Identities=11% Similarity=0.100 Sum_probs=140.3
Q ss_pred CCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc-eEEEee---------cccccEEEEEEec-CCe-EEEEe-CCCeE
Q 013717 211 HGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR-CLESIK---------AHEDAVNAVAVSA-GGT-VYTGS-ADRKI 275 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~-l~~~~-~dg~v 275 (437)
+-.....+++++ +++++...++.|++||..... .+..+. .+......++++| ++. +++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 445788999987 666666778999999986542 445442 2334689999999 777 55554 58999
Q ss_pred EEecCCCCcccceeeEEeeC----------ccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717 276 RVWAKPFNEKRHALIATLEK----------HKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
++||... ..+..+.. +-..+..++++|+ ++++++...++.|++||..+++....+. ...+..
T Consensus 169 ~~~~~~g-----~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~--~~~~~~ 241 (329)
T 3fvz_A 169 VQFSPSG-----KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK--HASFGR 241 (329)
T ss_dssp EEECTTS-----CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC--CTTTTT
T ss_pred EEEcCCC-----CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe--ccccCC
Confidence 9998432 23333321 2234899999998 7777777789999999998665332221 133455
Q ss_pred ceEEEEeeCCEEEEE--------eCCCcEEEeeCCCCCCeeeeeee---cCCCCCeeEEEEEccCCCCceEEEEEecCCC
Q 013717 345 AILCLINVAGLLMSG--------SADRTVRIWQRGSDGRFGCLAVL---EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG 413 (437)
Q Consensus 345 ~i~~~~~~~~~l~~~--------~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg 413 (437)
.+..+.+.+..++.. ..+..|++|+..+++ .+..+ .++.....+|+++|++ .++++...++
T Consensus 242 ~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~---~~~~~~~~~~~~~~p~~ia~~~dG-----~lyvad~~~~ 313 (329)
T 3fvz_A 242 NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE---IIDVFKPVRKHFDMPHDIVASEDG-----TVYIGDAHTN 313 (329)
T ss_dssp CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC---EEEEECCSSSCCSSEEEEEECTTS-----EEEEEESSSC
T ss_pred CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe---EEEEEcCCCCccCCeeEEEECCCC-----CEEEEECCCC
Confidence 666776666533332 234589999998877 55555 4677789999999988 3888888999
Q ss_pred cEEEEeeccCC
Q 013717 414 EIRAWQVSVSC 424 (437)
Q Consensus 414 ~i~iw~~~~~~ 424 (437)
.|++|+++...
T Consensus 314 ~I~~~~~~~~~ 324 (329)
T 3fvz_A 314 TVWKFTLTEKM 324 (329)
T ss_dssp CEEEEEEEECS
T ss_pred EEEEEeCCccc
Confidence 99999998653
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=9.1e-15 Score=144.66 Aligned_cols=277 Identities=10% Similarity=0.073 Sum_probs=170.6
Q ss_pred cCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC---------Ce
Q 013717 98 KLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD---------CK 163 (437)
Q Consensus 98 ~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---------g~ 163 (437)
.....+++|+ +++++++ + .|++||+.+++...+........+......+.|+|++ |+.++.+ +.
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3446688998 7788876 6 9999999997654443321111222233458889876 7777665 56
Q ss_pred EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717 164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD 241 (437)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 241 (437)
+.+||+.+++..... .|...+...+|+| +.|+.+ .++.|++||+.+
T Consensus 94 ~~~~d~~~~~~~~l~-------------------------------~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~ 141 (740)
T 4a5s_A 94 YDIYDLNKRQLITEE-------------------------------RIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN 141 (740)
T ss_dssp EEEEETTTTEECCSS-------------------------------CCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT
T ss_pred EEEEECCCCcEEEcc-------------------------------cCCCcceeeEECCCCCEEEEE-ECCeEEEEECCC
Confidence 779999988744321 3667899999999 677776 578999999988
Q ss_pred cceEEEee-cccccE-----------------EEEEEecCCe-EEEEeCCC-----------------------------
Q 013717 242 LRCLESIK-AHEDAV-----------------NAVAVSAGGT-VYTGSADR----------------------------- 273 (437)
Q Consensus 242 ~~~~~~~~-~~~~~v-----------------~~~~~~~~~~-l~~~~~dg----------------------------- 273 (437)
++..+... ++...+ ..+.|+|||+ |+.++.|.
T Consensus 142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 87554221 222222 3589999999 77765321
Q ss_pred -------eEEEecCCC---CcccceeeEEee------CccccEEEEEEccCCCEEEEEeC----CCcEEEEECCCCcc--
Q 013717 274 -------KIRVWAKPF---NEKRHALIATLE------KHKSAVNALALSDDGTVLFSGAC----DRSILVWDREDSAN-- 331 (437)
Q Consensus 274 -------~v~iwd~~~---~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-- 331 (437)
.|.+||+.. +... . ...+. ++...+..++|+|||+.++.... +..|++||+.+++.
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~ 299 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNA-T-SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRW 299 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCC-C-EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEE
T ss_pred cCcCCeeEEEEEECCCCCCCCcc-e-EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccc
Confidence 477788765 3210 1 11222 36677999999999996665432 34799999988761
Q ss_pred ----ceEEeeeecccccce-------EEEEeeCCEEE-EEe-CCC--cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717 332 ----HMVVTGALRGHGKAI-------LCLINVAGLLM-SGS-ADR--TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396 (437)
Q Consensus 332 ----~~~~~~~~~~~~~~i-------~~~~~~~~~l~-~~~-~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 396 (437)
...+. ..+|...+ ..++++++.|+ ..+ .+| .|++||+.++. ...+......|..+.. +
T Consensus 300 ~~~~~~~l~--~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~----~~~lT~g~~~v~~~~~-~ 372 (740)
T 4a5s_A 300 NCLVARQHI--EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD----CTFITKGTWEVIGIEA-L 372 (740)
T ss_dssp EECGGGCEE--EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS----CEESCCSSSCEEEEEE-E
T ss_pred ceeEEEEee--eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc----eEecccCCEEEEEEEE-E
Confidence 11111 12233322 23444555555 554 344 58888888654 3344444556666543 4
Q ss_pred cCCCCceEEEEEecC----CCcEEEEeec
Q 013717 397 EEGQNGVVSVFSGSL----DGEIRAWQVS 421 (437)
Q Consensus 397 ~~~~~~~~~l~s~~~----dg~i~iw~~~ 421 (437)
+++ .+++++.. .+...||.++
T Consensus 373 d~~----~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 373 TSD----YLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp CSS----EEEEEESCGGGCTTCBEEEEEE
T ss_pred eCC----EEEEEEecCCCCCceeEEEEEE
Confidence 443 35666654 3455666554
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.68 E-value=3.7e-14 Score=127.58 Aligned_cols=276 Identities=9% Similarity=0.028 Sum_probs=176.2
Q ss_pred CCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEec----------C-eEEEEeCCCCceeeeeccccCCC-
Q 013717 76 PDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASS----------H-EINVYDRTGTTWTSINTFNDNDS- 140 (437)
Q Consensus 76 ~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~----------d-~v~vwd~~~~~~~~~~~~~~~~~- 140 (437)
.|+.+.+|+..... .+..+ .+..+ .++|+ +++|+++.. + .|.+||..+. +.+..+.....
T Consensus 29 ~d~~v~v~D~~t~~-~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~ 103 (361)
T 2oiz_A 29 TESRVHVYDYTNGK-FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKR 103 (361)
T ss_dssp GGCEEEEEETTTCC-EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTB
T ss_pred ccCeEEEEECCCCe-EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccc
Confidence 47899999976544 34455 55555 88998 888888862 4 8999999874 33333321111
Q ss_pred --CcccEEEEEEeCCe--EEEEec--CCeEEEEeCCCCccccc-ccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717 141 --SSGSVKSVTFCDGK--IFTAHQ--DCKIRVWQLTPTKHHKL-KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD 213 (437)
Q Consensus 141 --h~~~v~~l~~~~~~--l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
+......+++++++ |+++.. +++|.+||+.+++.... +. ...
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-------------------------------~~~ 152 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-------------------------------AAG 152 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-------------------------------GTT
T ss_pred cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-------------------------------CCC
Confidence 23456789999765 666653 68999999998865433 22 111
Q ss_pred cEEEEEeCC---CeEEEEECCCcEEEEECCC-cceEEEe------ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCC
Q 013717 214 AVTGLAVNN---GLIYSVSWDKSLKIWRASD-LRCLESI------KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282 (437)
Q Consensus 214 ~v~~~~~~~---~~l~~~~~dg~i~iwd~~~-~~~~~~~------~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~ 282 (437)
...+.+.| ..+++.+.||.+.+|+... ++..... .....++ .+.+.+++. ++..+.++.|.++|+..
T Consensus 153 -~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~ 230 (361)
T 2oiz_A 153 -CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSG 230 (361)
T ss_dssp -EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSS
T ss_pred -cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecC
Confidence 12233444 5778888999999999865 5544221 1112222 233456665 77777899999999864
Q ss_pred CcccceeeEEeeCc----------cccEEEEEEccCCCEEEEEeC-----------CCcEEEEECCCCccceEEeeeecc
Q 013717 283 NEKRHALIATLEKH----------KSAVNALALSDDGTVLFSGAC-----------DRSILVWDREDSANHMVVTGALRG 341 (437)
Q Consensus 283 ~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~ 341 (437)
+.. .....+... ......++|+|+++.++++.. .+.|.+||+.+.+ ....+..
T Consensus 231 ~~~--~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~----~v~~i~~ 304 (361)
T 2oiz_A 231 DEV--KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ----RVARIPG 304 (361)
T ss_dssp SSC--EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE----EEEEEEC
T ss_pred CCc--eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc----EEEEEec
Confidence 431 122221110 011123789999888877653 3489999998875 3333444
Q ss_pred cccceEEEEe--eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717 342 HGKAILCLIN--VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG 399 (437)
Q Consensus 342 ~~~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 399 (437)
+. ..++.+ ++++|++++. +.|.+||..++. .+.+..+..+......++++|++.
T Consensus 305 ~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~-l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 305 RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE-PKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSS-CEEEEEETTSCSSEEEEEECCCSC
T ss_pred CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc-ceeeEEeccCCCCcEEEEecCCCC
Confidence 44 555555 4568888876 999999999871 126777766777888999999873
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=1.9e-14 Score=140.83 Aligned_cols=283 Identities=8% Similarity=0.044 Sum_probs=170.3
Q ss_pred CccCCeEEEEeeCCEEEEEe----cC-eEEEEeCCCCceeeeeccccCCCCcccEE---------EEEEe--CCe---EE
Q 013717 96 GHKLPIGCIAVHHNFLYAAS----SH-EINVYDRTGTTWTSINTFNDNDSSSGSVK---------SVTFC--DGK---IF 156 (437)
Q Consensus 96 ~h~~~V~~l~~~~~~l~s~~----~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~---------~l~~~--~~~---l~ 156 (437)
+|...|..++++++.++-.. .+ ...||....+. ....+ ..|...+. ...|+ |++ |+
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~l---~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG--AEESA---LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS--CEEES---SCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC--Cccee---CCCCccccccccccCCccceeeeecCCCeEEE
Confidence 88999999999955444333 35 88999854321 12222 23444444 55565 543 44
Q ss_pred EEec-CCeEEEEeCC--C-CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC
Q 013717 157 TAHQ-DCKIRVWQLT--P-TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW 230 (437)
Q Consensus 157 s~~~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 230 (437)
.++. +..|.+|++. . ++ ...+...+. ..|...+..++|+| +.|++++.
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~-------------------------~~~~~~~~~~~~spDg~~l~~~~~ 149 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA-------------------------VGGGLRWADPVLLPERGEVWCMAE 149 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCC-CEECSCCCC-------------------------STTCEEEEEEEEETTTTEEEEEEE
T ss_pred EEECCCCeEEEEcCCCCCCCC-CEeccCCcc-------------------------CCCCccccCcEECCCCCEEEEEEe
Confidence 4332 4556666655 2 32 121211000 01456788999998 78888877
Q ss_pred C----------CcEEEEECCC------cceEEEee-cccccEEEEEEecCCe-EEEEeCC--------CeEEEecCCCCc
Q 013717 231 D----------KSLKIWRASD------LRCLESIK-AHEDAVNAVAVSAGGT-VYTGSAD--------RKIRVWAKPFNE 284 (437)
Q Consensus 231 d----------g~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~d--------g~v~iwd~~~~~ 284 (437)
+ ..|++||+.+ ++. ..+. .+...+..++|+|||+ |+.++.+ ..|.+||+....
T Consensus 150 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 150 EFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp EECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred cccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 6 5899999988 554 3444 4556788899999998 7777654 379999986211
Q ss_pred ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC--cEEEEECCCCccceEEeeeecccccc--------eEEEEee--
Q 013717 285 KRHALIATLEKHKSAVNALALSDDGTVLFSGACDR--SILVWDREDSANHMVVTGALRGHGKA--------ILCLINV-- 352 (437)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~--------i~~~~~~-- 352 (437)
...........+...+..+.|+|||+++++++.++ .|++||+.+++.. .+ ...+... +..+.+.
T Consensus 229 ~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l---~~~~~~~~~p~w~~~~~~~~~~~~ 304 (662)
T 3azo_A 229 RFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QL---CRREEEFAGPLWTPGMRWFAPLAN 304 (662)
T ss_dssp CEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ES---SCCSSBSSCCCCSTTCCSEEECTT
T ss_pred cccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ec---ccccccccCccccccCceEeEeCC
Confidence 11122233334567899999999999888888888 6666676554321 11 1112111 2345544
Q ss_pred CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 353 AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 353 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
+.+++++.. +.++||.+.... ..+..+..|...+..+. +++++. .++++++.+....+|.++
T Consensus 305 ~~~~~~~~~-~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~-s~~~~~---~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 305 GLIAVVHGK-GAAVLGILDPES--GELVDAAGPWTEWAATL-TVSGTR---AVGVAASPRTAYEVVELD 366 (662)
T ss_dssp SCEEEEEBS-SSCEEEEEETTT--TEEEECCSSCCEEEEEE-EEETTE---EEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEEc-CccEEEEEECCC--CcEEEecCCCCeEEEEE-ecCCCE---EEEEEcCCCCCCEEEEEE
Confidence 558888888 999999443221 13567777877787761 444432 355555666555555443
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=3.9e-15 Score=136.10 Aligned_cols=285 Identities=8% Similarity=-0.005 Sum_probs=166.9
Q ss_pred eEEEEee--CCEEEEEec---C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCC
Q 013717 101 IGCIAVH--HNFLYAASS---H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPT 172 (437)
Q Consensus 101 V~~l~~~--~~~l~s~~~---d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~ 172 (437)
+.+++|+ |++|+.... + .|.+||+.+++...+.. ++......+.|+|+. |+.++.++.|.+||+.++
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-----GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-----SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-----CCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 6778888 888776643 3 78999998865433321 222223347789765 888888899999999877
Q ss_pred cccccccccCcc--ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-----ECCCcEEEEECCCcc
Q 013717 173 KHHKLKTTLPTV--NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-----SWDKSLKIWRASDLR 243 (437)
Q Consensus 173 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-----~~dg~i~iwd~~~~~ 243 (437)
+........... ......+........ . ....+.++| +.++.+ ..+..|.+||+.+++
T Consensus 113 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-------~------~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (396)
T 3c5m_A 113 EEQVIYTVDEEWKGYGTWVANSDCTKLVG-------I------EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE 179 (396)
T ss_dssp CEEEEEECCTTEEEEEEEEECTTSSEEEE-------E------EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred CcEEEEecccccCCCCCEEEeccCCcccc-------c------cccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence 543322211000 000000000000000 0 000122333 333332 356789999999887
Q ss_pred eEEEeecccccEEEEEEec-CCe-EEEEeCC------CeEEEecCCCCcccceeeEEeeCc--cccEEEEEEccCCCEEE
Q 013717 244 CLESIKAHEDAVNAVAVSA-GGT-VYTGSAD------RKIRVWAKPFNEKRHALIATLEKH--KSAVNALALSDDGTVLF 313 (437)
Q Consensus 244 ~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~ 313 (437)
..... .+...+..+.|+| ++. |+..+.+ ..|.+||+.... ...+..+ ...+..++|+|||++|+
T Consensus 180 ~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~ 253 (396)
T 3c5m_A 180 LEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-----VRKIKEHAEGESCTHEFWIPDGSAMA 253 (396)
T ss_dssp EEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-----CEESSCCCTTEEEEEEEECTTSSCEE
T ss_pred EEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-----eeEeeccCCCccccceEECCCCCEEE
Confidence 65544 4667799999999 777 6666543 358888875332 1222222 33588899999999887
Q ss_pred EEeCC-----CcEEEEECCCCccceEEeeeecccccceEEEEe-eCCEEEEEe----------------CCCcEEEeeCC
Q 013717 314 SGACD-----RSILVWDREDSANHMVVTGALRGHGKAILCLIN-VAGLLMSGS----------------ADRTVRIWQRG 371 (437)
Q Consensus 314 ~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~----------------~dg~i~iwd~~ 371 (437)
.++.+ +.|++||+.+++... .....++. ..+.. ++.+++.++ .++.|++||+.
T Consensus 254 ~~~~~~~~~~~~l~~~d~~~g~~~~--l~~~~~~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 254 YVSYFKGQTDRVIYKANPETLENEE--VMVMPPCS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp EEEEETTTCCEEEEEECTTTCCEEE--EEECCSEE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred EEecCCCCccceEEEEECCCCCeEE--eeeCCCCC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 77554 459999998765322 11222221 44455 666777654 34789999998
Q ss_pred CCCCeeeeeeecCCCC-----------CeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 372 SDGRFGCLAVLEGHTK-----------PVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 372 ~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
+++. ..+..+.. .+..++|+|++.. ++++...++...+|.++.
T Consensus 329 ~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 329 AKSA----QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDG----VLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp TTBC----CEEEECCCCCCCBTTBSSTTCCCCEECTTSSE----EEEEECTTSSCEEEEEEC
T ss_pred cCce----EEccCCCCccccccccccCCCCCceEccCCCe----EEEEecCCCCceEEEEEE
Confidence 7652 23333433 2567789998752 455555567777777653
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.67 E-value=4e-14 Score=127.35 Aligned_cols=261 Identities=13% Similarity=0.089 Sum_probs=167.4
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe----------cCCeEEEEeCCCCcccccccccCccc
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH----------QDCKIRVWQLTPTKHHKLKTTLPTVN 185 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~ 185 (437)
.|.+||..+++. +..+ ..+..+ .++|++++ ++++. .++.|.+||..+.+....+...+..
T Consensus 32 ~v~v~D~~t~~~--~~~i---~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~- 103 (361)
T 2oiz_A 32 RVHVYDYTNGKF--LGMV---PTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR- 103 (361)
T ss_dssp EEEEEETTTCCE--EEEE---ECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-
T ss_pred eEEEEECCCCeE--EEEe---cCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-
Confidence 899999988643 3344 234444 89999776 66554 3678999999877654433211100
Q ss_pred cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC--CCcEEEEECCCcceEEE-eecccccEEEEEE
Q 013717 186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW--DKSLKIWRASDLRCLES-IKAHEDAVNAVAV 260 (437)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~ 260 (437)
..+......++++| ++|+++.. ++.|.+||+.+++.+.. +.. . ....+.+
T Consensus 104 -----------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~ 158 (361)
T 2oiz_A 104 -----------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIP 158 (361)
T ss_dssp -----------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEE
T ss_pred -----------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEE
Confidence 01223456788887 78887764 68999999999988877 542 2 2333567
Q ss_pred ecCCe--EEEEeCCCeEEEecCCCCcccceee---EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEE
Q 013717 261 SAGGT--VYTGSADRKIRVWAKPFNEKRHALI---ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVV 335 (437)
Q Consensus 261 ~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (437)
.|++. +++.+.||.+.+|++.......... ..+.....+ ..+.+++++..++..+.++.|.++|+.........
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG 237 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence 78763 8888999999999875422111011 111112222 23445677877777888999999999754322111
Q ss_pred eeeec----------ccccceEEEEeeCCEEEEEeC-----------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEE
Q 013717 336 TGALR----------GHGKAILCLINVAGLLMSGSA-----------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTA 394 (437)
Q Consensus 336 ~~~~~----------~~~~~i~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~ 394 (437)
..... ........+..+++.++++.. .+.|.+||+.+.+ .+..+..+. +.+|+|
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~---~v~~i~~~~--p~~ia~ 312 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ---RVARIPGRD--ALSMTI 312 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE---EEEEEECTT--CCEEEE
T ss_pred cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc---EEEEEecCC--eeEEEE
Confidence 10000 011122455555565555432 3479999999876 777887776 999999
Q ss_pred EccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 395 VTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 395 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
+|++. +|++++. +.|.+||..++
T Consensus 313 spdg~-----~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 313 DQQRN-----LMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ETTTT-----EEEEECS-SCEEEEECSSS
T ss_pred CCCCC-----EEEEeCC-CeEEEEECCCC
Confidence 99985 6777766 99999999988
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=1.8e-13 Score=122.74 Aligned_cols=252 Identities=9% Similarity=0.064 Sum_probs=160.3
Q ss_pred CeEEEEeeCCEEEEEe---------cC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC---C--
Q 013717 100 PIGCIAVHHNFLYAAS---------SH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD---C-- 162 (437)
Q Consensus 100 ~V~~l~~~~~~l~s~~---------~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g-- 162 (437)
.+...+++|++++... .+ .|.+||+.+++...+ ..+..+.|+|++ |+.++.+ +
T Consensus 16 ~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----------~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----------ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----------ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred EcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----------ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 3455555776666542 24 899999998643332 457889999775 6666543 3
Q ss_pred eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC----------
Q 013717 163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW---------- 230 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~---------- 230 (437)
.|.+|++.+++...... +.. +..+.|+| +.|+.++.
T Consensus 86 ~l~~~~~~~g~~~~l~~-------------------------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 86 EIWVADLETLSSKKILE-------------------------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp EEEEEETTTTEEEEEEE-------------------------------ESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred eEEEEECCCCceEEEEc-------------------------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 37777887665322211 223 78889987 66776653
Q ss_pred -----------------CCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCC------C-eEEEecCCCCccc
Q 013717 231 -----------------DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSAD------R-KIRVWAKPFNEKR 286 (437)
Q Consensus 231 -----------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------g-~v~iwd~~~~~~~ 286 (437)
...|.+||+.+++.+..+.. . .+..++|+|+|.++++..+ . ...+|.+. ..
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~-- 208 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DG-- 208 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TT--
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC-CC--
Confidence 25799999998877455554 3 7889999999943344333 1 34555443 21
Q ss_pred ceeeEEeeCccccEEEEEEccCCCEEEEEeCC--------CcEEEEECCCCccceEEeeeecccccceEE-EEeeCCEEE
Q 013717 287 HALIATLEKHKSAVNALALSDDGTVLFSGACD--------RSILVWDREDSANHMVVTGALRGHGKAILC-LINVAGLLM 357 (437)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~ 357 (437)
+ ...+..+ ..+..+ +|||++|+.++.+ ..|++|| +++ .......+...+.. +.|+..+++
T Consensus 209 -~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~----~~~l~~~~~~~~~~~~~~sdg~~~ 277 (347)
T 2gop_A 209 -K-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE----VMGILDEVDRGVGQAKIKDGKVYF 277 (347)
T ss_dssp -E-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC----EEESSTTCCSEEEEEEEETTEEEE
T ss_pred -c-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc----eEeccccCCcccCCccEEcCcEEE
Confidence 1 2222223 445444 9999988877654 3688888 332 12223344555654 666522888
Q ss_pred EEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcE-EEEeec
Q 013717 358 SGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI-RAWQVS 421 (437)
Q Consensus 358 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i-~iw~~~ 421 (437)
+++.++.++|| +.+++ . ..+..+...|.+++|++ . ++++++.++.. .+|.++
T Consensus 278 ~~~~~~~~~l~-~~~g~---~-~~~~~~~~~v~~~~~s~-~------~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGE---I-KPIAKGRHWIMGFDVDE-I------VVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEETTEEEEE-EESSS---E-EEEECSSSEEEEEEESS-S------EEEEEECSSSCCEEEEES
T ss_pred EEecCCcEEEE-EcCCc---e-EEEecCCCeEEeeeeeC-c------EEEEEcCCCChHHheEeC
Confidence 89999999999 87433 3 33444577899999998 4 67777777765 888876
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=6.2e-13 Score=118.45 Aligned_cols=263 Identities=10% Similarity=0.053 Sum_probs=166.5
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
.++.+.+....+.+++.++.+..|. ......+ ++...+.+++|+ +++++++..+ .|.+||.++++......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~- 83 (333)
T 2dg1_A 9 PTLFYSGKSNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV- 83 (333)
T ss_dssp CBCCSCGGGGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-
T ss_pred ceeeecCCccceeEEeecccCcccc----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee-
Confidence 3566777777778778888888882 3344455 777788999998 7777778777 99999998865443321
Q ss_pred ccCCCCcccEEEEEEeCCe-EEEEe-cC----CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717 136 NDNDSSSGSVKSVTFCDGK-IFTAH-QD----CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~~~-l~s~~-~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (437)
.+...+.+++++++. ++.+. .+ +.|.+||.+++.........
T Consensus 84 ----~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------------------- 131 (333)
T 2dg1_A 84 ----SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL---------------------------- 131 (333)
T ss_dssp ----CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS----------------------------
T ss_pred ----CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC----------------------------
Confidence 255789999999665 55444 44 58999998876532111100
Q ss_pred cCCCcEEEEEeCC-CeEEEEEC-------CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCCeEEEec
Q 013717 210 EHGDAVTGLAVNN-GLIYSVSW-------DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADRKIRVWA 279 (437)
Q Consensus 210 ~~~~~v~~~~~~~-~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~v~iwd 279 (437)
.+...+.++++++ ..++.+.. .+.|..+|..+++... +......+..++|+|++. ++ +...++.|.+||
T Consensus 132 ~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d 210 (333)
T 2dg1_A 132 STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIA 210 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 1345788999988 44444444 3567777766554433 323344688999999997 54 445678999999
Q ss_pred CCCCccccee-----eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee--cccccceEEEEee
Q 013717 280 KPFNEKRHAL-----IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL--RGHGKAILCLINV 352 (437)
Q Consensus 280 ~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~ 352 (437)
+......... ...+.++ ..+..++++++|+++++...++.|.+||.. ++....+.... .+|...+.+++++
T Consensus 211 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 211 LEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFI 288 (333)
T ss_dssp ECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred ecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEEC
Confidence 8532211111 1111222 467889999999988887778999999984 33222221100 0111245666665
Q ss_pred C--CEEEEEeCC
Q 013717 353 A--GLLMSGSAD 362 (437)
Q Consensus 353 ~--~~l~~~~~d 362 (437)
+ ..|+.++.+
T Consensus 289 ~dg~~L~v~~~~ 300 (333)
T 2dg1_A 289 PGTNQLIICSND 300 (333)
T ss_dssp TTSCEEEEEEEC
T ss_pred CCCCEEEEEeCc
Confidence 3 466555554
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=5e-13 Score=119.06 Aligned_cols=273 Identities=10% Similarity=0.048 Sum_probs=167.3
Q ss_pred CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-E-EEEecCCeEEEEeCCCCc
Q 013717 99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-I-FTAHQDCKIRVWQLTPTK 173 (437)
Q Consensus 99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l-~s~~~dg~i~iwd~~~~~ 173 (437)
..|.+++|+ +..++..+.+ .++.|.- .....+ ..+...+.+++|+++. | +++..++.|.+||.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA-----EPWLEI---SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC-----EEEEEE---ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecCCccceeEEeecccCccccc-----ceeEEE---eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc
Confidence 346677777 4455555556 8888832 222222 2355677999999665 4 467788999999998765
Q ss_pred ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECC----CcEEEEECCCcceEEE
Q 013717 174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD----KSLKIWRASDLRCLES 247 (437)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d----g~i~iwd~~~~~~~~~ 247 (437)
..... ..+...+.++++++ +++++...+ +.|.+||..+++....
T Consensus 78 ~~~~~------------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~ 127 (333)
T 2dg1_A 78 IKRPF------------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI 127 (333)
T ss_dssp EEEEE------------------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred EEEEe------------------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE
Confidence 32211 12456799999987 445544444 5899999988766533
Q ss_pred ee--cccccEEEEEEecCCeEEEEeC-------CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEE-EeC
Q 013717 248 IK--AHEDAVNAVAVSAGGTVYTGSA-------DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFS-GAC 317 (437)
Q Consensus 248 ~~--~~~~~v~~~~~~~~~~l~~~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~ 317 (437)
+. .....+.+++++|+|.++.+.. .+.|..+|..... . ..+......+..++|+|+|+.|+. .+.
T Consensus 128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~----~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 202 (333)
T 2dg1_A 128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT----V-TPIIQNISVANGIALSTDEKVLWVTETT 202 (333)
T ss_dssp ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC----E-EEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE----E-EEeecCCCcccceEECCCCCEEEEEeCC
Confidence 32 2345789999999999555554 2556666543221 1 122223345789999999986654 456
Q ss_pred CCcEEEEECCC-CccceEE----eeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC----
Q 013717 318 DRSILVWDRED-SANHMVV----TGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT---- 386 (437)
Q Consensus 318 dg~i~i~d~~~-~~~~~~~----~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~---- 386 (437)
++.|.+||+.. +.....+ .....++ ..+..+.++ ++++++...++.|.+||.. ++ .+..+..+.
T Consensus 203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~---~~~~~~~~~~~~g 277 (333)
T 2dg1_A 203 ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GY---PIGQILIPGRDEG 277 (333)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SC---EEEEEECTTGGGT
T ss_pred CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CC---EEEEEEcCCCccc
Confidence 78999999964 2222111 1111222 244556665 4466666678899999984 43 344444332
Q ss_pred --CCeeEEEEEccCCCCceEEEEEecCC---CcEEEEeeccC
Q 013717 387 --KPVKSLTAVTEEGQNGVVSVFSGSLD---GEIRAWQVSVS 423 (437)
Q Consensus 387 --~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~ 423 (437)
..+.+++|++++. .++++...+ ..-.||.++..
T Consensus 278 ~~~~~~~~~~~~dg~----~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 278 HMLRSTHPQFIPGTN----QLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp CSCBCCEEEECTTSC----EEEEEEECGGGTCCEEEEEEECS
T ss_pred cccCcceEEECCCCC----EEEEEeCccCCCCCceEEEEecc
Confidence 2689999998754 234444431 23566666544
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.63 E-value=1.1e-12 Score=116.31 Aligned_cols=260 Identities=12% Similarity=0.065 Sum_probs=172.4
Q ss_pred C-eEEEEeCCCCceeeeecc-ccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecC
Q 013717 117 H-EINVYDRTGTTWTSINTF-NDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFML 193 (437)
Q Consensus 117 d-~v~vwd~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (437)
+ .|.+||.++++....... ............+.+.++. +++...++.|.+||..+++....+.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-------------- 81 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-------------- 81 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE--------------
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC--------------
Confidence 6 999999998644321110 0011233557888888887 5555667999999999887544332
Q ss_pred CCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEE-CCCcEEEEECCCcceEEEeeccc-----ccEEEEEEecCCeE
Q 013717 194 PNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVS-WDKSLKIWRASDLRCLESIKAHE-----DAVNAVAVSAGGTV 266 (437)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l 266 (437)
.......+++++ ..++++. .++.|.+||..+++....+.... .....+++ .++++
T Consensus 82 -----------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~l 143 (328)
T 3dsm_A 82 -----------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYV 143 (328)
T ss_dssp -----------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEE
T ss_pred -----------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEE
Confidence 334577888854 6666666 79999999999998887776332 14556777 56665
Q ss_pred EEEe--CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC----------CcEEEEECCCCccceE
Q 013717 267 YTGS--ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD----------RSILVWDREDSANHMV 334 (437)
Q Consensus 267 ~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~ 334 (437)
+++. .++.|.++|+.+.. .+..+.. ......++++|+|++++++..+ +.|.++|..+++....
T Consensus 144 yv~~~~~~~~v~viD~~t~~----~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~ 218 (328)
T 3dsm_A 144 YVNCWSYQNRILKIDTETDK----VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ 218 (328)
T ss_dssp EEEECTTCCEEEEEETTTTE----EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE
T ss_pred EEEcCCCCCEEEEEECCCCe----EEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE
Confidence 5554 48999999987543 3444443 3345788999999877776655 7899999987653222
Q ss_pred EeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEe---
Q 013717 335 VTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSG--- 409 (437)
Q Consensus 335 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~--- 409 (437)
+. .. .......++++ ++.|+++.. .|.+||..+++.. ....+..+.....+++++|+++. ++++.
T Consensus 219 ~~--~~-~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~-~~~~~~~~~~~p~gi~vdp~~g~----lyva~~~~ 288 (328)
T 3dsm_A 219 FK--FK-LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP-VRPFLEFRDTKYYGLTVNPNNGE----VYVADAID 288 (328)
T ss_dssp EE--CC-TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC-SSCSBCCCSSCEEEEEECTTTCC----EEEEECTT
T ss_pred Ee--cC-CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee-eeeeecCCCCceEEEEEcCCCCe----EEEEcccc
Confidence 11 11 12245667776 457766654 8999999876621 11112222467889999996553 66666
Q ss_pred -cCCCcEEEEeeccCC
Q 013717 410 -SLDGEIRAWQVSVSC 424 (437)
Q Consensus 410 -~~dg~i~iw~~~~~~ 424 (437)
..++.|.+||.+ ++
T Consensus 289 y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 289 YQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp SSSEEEEEEECTT-CC
T ss_pred cccCCEEEEECCC-CC
Confidence 678999999988 54
No 178
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=4.9e-13 Score=118.68 Aligned_cols=259 Identities=7% Similarity=0.029 Sum_probs=167.4
Q ss_pred CCCceeEEecCCCcceeeeec-C-----ccCCeEEEEeeCCEE-EEEecC-eEEEEeCCCCceeeeeccccCCCCcccEE
Q 013717 75 SPDETINFSSASHLCINSVQL-G-----HKLPIGCIAVHHNFL-YAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVK 146 (437)
Q Consensus 75 s~dg~i~~~~~~~~~~~~~~~-~-----h~~~V~~l~~~~~~l-~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~ 146 (437)
+.++.|.+++..........+ . .......+++.++.+ ++...+ .|.+||..+++ .+.++. ......
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~--~~~~i~----~~~~p~ 87 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFK--EVGRIT----GFTSPR 87 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCC--EEEEEE----CCSSEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccE--EEEEcC----CCCCCc
Confidence 347899999987644332221 1 224467788885444 444445 99999999853 344441 346788
Q ss_pred EEEEe-CCeEEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCe
Q 013717 147 SVTFC-DGKIFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGL 224 (437)
Q Consensus 147 ~l~~~-~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 224 (437)
.++++ ++.++.+. .++.|.+||..+++....+..-.. .+.......+++..+.
T Consensus 88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-------------------------~~~~~~p~~i~~~~~~ 142 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM-------------------------DMESGSTEQMVQYGKY 142 (328)
T ss_dssp EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC-------------------------CTTTCBCCCEEEETTE
T ss_pred EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc-------------------------cccCCCcceEEEECCE
Confidence 99996 44555555 789999999998764433221000 0011133455555566
Q ss_pred EEEEE--CCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeC-C----------CeEEEecCCCCcccceeeE
Q 013717 225 IYSVS--WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSA-D----------RKIRVWAKPFNEKRHALIA 291 (437)
Q Consensus 225 l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~-d----------g~v~iwd~~~~~~~~~~~~ 291 (437)
++++. .++.|.++|..+++.+..+.. ......++++|+|+++.++. + +.|.++|..+.. ...
T Consensus 143 lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~----v~~ 217 (328)
T 3dsm_A 143 VYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT----VEK 217 (328)
T ss_dssp EEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE----EEE
T ss_pred EEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe----EEE
Confidence 66665 489999999999998887764 33457889999999554443 3 789999876543 343
Q ss_pred EeeCc-cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--C-EEEEE----eCCC
Q 013717 292 TLEKH-KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--G-LLMSG----SADR 363 (437)
Q Consensus 292 ~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~----~~dg 363 (437)
.+... ...+..++++|++++|+++.. .|.+||..+++.... ............+++++ . ++++. ..++
T Consensus 218 ~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~--~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~ 293 (328)
T 3dsm_A 218 QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR--PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG 293 (328)
T ss_dssp EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS--CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee--eeecCCCCceEEEEEcCCCCeEEEEcccccccCC
Confidence 44322 346899999999999988765 899999987653211 11111134556677754 3 55555 5688
Q ss_pred cEEEeeCCCCC
Q 013717 364 TVRIWQRGSDG 374 (437)
Q Consensus 364 ~i~iwd~~~~~ 374 (437)
.|.+||.. ++
T Consensus 294 ~V~v~d~~-g~ 303 (328)
T 3dsm_A 294 IVYRYSPQ-GK 303 (328)
T ss_dssp EEEEECTT-CC
T ss_pred EEEEECCC-CC
Confidence 99999998 55
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.62 E-value=1.2e-12 Score=116.27 Aligned_cols=244 Identities=9% Similarity=0.034 Sum_probs=160.1
Q ss_pred cCCeEEEEee--CCEEEEEecC-------------------------eEEEEeCCCCceeeeeccccCCCCcccEEEEEE
Q 013717 98 KLPIGCIAVH--HNFLYAASSH-------------------------EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTF 150 (437)
Q Consensus 98 ~~~V~~l~~~--~~~l~s~~~d-------------------------~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~ 150 (437)
-+.+.+++++ |+++++...+ .|.+||..+++.. ..+. .++-..+..|++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~--~~~~~~p~gia~ 98 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--QSSG--KNLFYLPHGLSI 98 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--EEEC--TTTCSSEEEEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--eccC--CCccCCceEEEE
Confidence 3568888888 7777777665 4999999876443 2221 245567899999
Q ss_pred eCCe--EEEEecCCeEEEEeCCCCc-ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---Ce
Q 013717 151 CDGK--IFTAHQDCKIRVWQLTPTK-HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GL 224 (437)
Q Consensus 151 ~~~~--l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~ 224 (437)
+++. +++...++.|++|+.+... ....+....... .-.++......+++++ .+
T Consensus 99 d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g---------------------~~~~~~~~P~~ia~~~~~g~l 157 (329)
T 3fvz_A 99 DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG---------------------SDQNHFCQPTDVAVEPSTGAV 157 (329)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC---------------------CSTTCCSSEEEEEECTTTCCE
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC---------------------CCccccCCCcEEEEeCCCCeE
Confidence 9665 6666678999999986542 111111000000 0012445688999986 44
Q ss_pred EEEEE-CCCcEEEEECCCcceEEEeecc----------cccEEEEEEecC-Ce-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717 225 IYSVS-WDKSLKIWRASDLRCLESIKAH----------EDAVNAVAVSAG-GT-VYTGSADRKIRVWAKPFNEKRHALIA 291 (437)
Q Consensus 225 l~~~~-~dg~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~~~~~~~~~~~~ 291 (437)
+++.+ .++.|++|| .+++.+..+... -.....++++|+ +. +++...++.|++||..++ +.+.
T Consensus 158 yv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G----~~~~ 232 (329)
T 3fvz_A 158 FVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK----EFVR 232 (329)
T ss_dssp EEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC----CEEE
T ss_pred EEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC----cEEE
Confidence 44444 589999999 567777766422 234889999998 77 677778899999987633 3444
Q ss_pred Eee--CccccEEEEEEcc------CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeC
Q 013717 292 TLE--KHKSAVNALALSD------DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSA 361 (437)
Q Consensus 292 ~~~--~~~~~i~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~ 361 (437)
.+. .+...+..++|+| +|+..++...+..|++||..+++....+ ....++......++++++ ++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~-~~~~~~~~~p~~ia~~~dG~lyvad~~ 311 (329)
T 3fvz_A 233 EIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF-KPVRKHFDMPHDIVASEDGTVYIGDAH 311 (329)
T ss_dssp EECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE-CCSSSCCSSEEEEEECTTSEEEEEESS
T ss_pred EEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE-cCCCCccCCeeEEEECCCCCEEEEECC
Confidence 442 3556788999999 3333333344568999999887633322 111345566777777655 7777888
Q ss_pred CCcEEEeeCCC
Q 013717 362 DRTVRIWQRGS 372 (437)
Q Consensus 362 dg~i~iwd~~~ 372 (437)
++.|++|++..
T Consensus 312 ~~~I~~~~~~~ 322 (329)
T 3fvz_A 312 TNTVWKFTLTE 322 (329)
T ss_dssp SCCEEEEEEEE
T ss_pred CCEEEEEeCCc
Confidence 99999999864
No 180
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.62 E-value=8.4e-14 Score=126.91 Aligned_cols=265 Identities=8% Similarity=-0.001 Sum_probs=161.9
Q ss_pred eeeccccccccccCC-Cce--eEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717 62 LQTLPSVPSLQKLSP-DET--INFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT 134 (437)
Q Consensus 62 ~~~~~~~~~~~s~s~-dg~--i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~ 134 (437)
..++|....++..+. ++. |.+|+.... ...... +|...+..++|+ |+.|+.++.+ .|++||+.+++...+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC-EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC-ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence 467788887777776 674 666666553 333444 777777677888 8999999988 99999999976555544
Q ss_pred cccCCCCcccEEEEEE--eCCe-EEEE-----------------------ecCCeEEEEeCCCCcccccccccCccccce
Q 013717 135 FNDNDSSSGSVKSVTF--CDGK-IFTA-----------------------HQDCKIRVWQLTPTKHHKLKTTLPTVNDRL 188 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~--~~~~-l~s~-----------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 188 (437)
. +...+....| +++. ++.+ ..+..|.+||+.+++....
T Consensus 120 ~-----~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l----------- 183 (388)
T 3pe7_A 120 V-----PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI----------- 183 (388)
T ss_dssp C-----CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-----------
T ss_pred c-----hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe-----------
Confidence 3 4444444443 5554 3331 2346788888887753222
Q ss_pred eeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECC------CcEEEEECCCcceEEEeeccc--ccEEE
Q 013717 189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWD------KSLKIWRASDLRCLESIKAHE--DAVNA 257 (437)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~--~~v~~ 257 (437)
..+...+..+.|+| +.|+.+..+ ..|.++|...++.. .+..+. ..+..
T Consensus 184 --------------------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 184 --------------------LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTH 242 (388)
T ss_dssp --------------------EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEE
T ss_pred --------------------ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCccccc
Confidence 13556688888987 556666553 37888888765543 333333 35788
Q ss_pred EEEecCCe-EEEEeC-CC----eEEEecCCCCcccceeeEEeeCcccc---EEEEEEccCCCEEEEE---------eCCC
Q 013717 258 VAVSAGGT-VYTGSA-DR----KIRVWAKPFNEKRHALIATLEKHKSA---VNALALSDDGTVLFSG---------ACDR 319 (437)
Q Consensus 258 ~~~~~~~~-l~~~~~-dg----~v~iwd~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~---------~~dg 319 (437)
++|+|||+ |+..+. ++ .|.+||+.++.. ..+..+..+... ...+.|+|||+.|+.. ..+.
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 320 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP 320 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCce--EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence 99999998 655443 22 399999876542 223233321111 1123799999988754 4567
Q ss_pred cEEEEECCCCccceEEeeeeccccc-----------ceEEEE--eeCCEEEE-EeCCCcEEEeeCC
Q 013717 320 SILVWDREDSANHMVVTGALRGHGK-----------AILCLI--NVAGLLMS-GSADRTVRIWQRG 371 (437)
Q Consensus 320 ~i~i~d~~~~~~~~~~~~~~~~~~~-----------~i~~~~--~~~~~l~~-~~~dg~i~iwd~~ 371 (437)
.|++||+.+++.. .+ ..+.. .+..+. ++++.|+. +..+|...||.+.
T Consensus 321 ~i~~~d~~~~~~~-~l----~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 321 FLYVFNMKNGTQH-RV----ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEEEETTTTEEE-EE----EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEEEEeccCCceE-Ee----ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 8999999876432 12 22222 234344 44555554 4457777777554
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=1.7e-12 Score=111.87 Aligned_cols=237 Identities=10% Similarity=0.040 Sum_probs=155.0
Q ss_pred cEEEEEEeCCe-EEE-E-ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717 144 SVKSVTFCDGK-IFT-A-HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV 220 (437)
Q Consensus 144 ~v~~l~~~~~~-l~s-~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (437)
...+++++++. ++. + ..++.|.+|+..+....... ..+...+.++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~------------------------------~~~~~~p~~i~~ 74 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP------------------------------FNGLYQPQGLAV 74 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC------------------------------CCSCCSCCCEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe------------------------------eCCcCCcceeEE
Confidence 78899998665 554 5 67889999987654321110 012345677888
Q ss_pred CC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccc
Q 013717 221 NN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKS 298 (437)
Q Consensus 221 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (437)
++ ..++.+..++.|.+||................+..+++.++|. +++...++.|.+|+..... ..........
T Consensus 75 ~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~----~~~~~~~~~~ 150 (270)
T 1rwi_B 75 DGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT----QTVLPFTGLN 150 (270)
T ss_dssp CTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS----CEECCCCSCC
T ss_pred CCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce----eEeeccccCC
Confidence 87 4455555588999999876544322212335789999999998 5555667899999754322 1111122234
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCe
Q 013717 299 AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRF 376 (437)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~ 376 (437)
.+..++++++|+++++...++.|.+||........ ....+...+..+.++++ ++++...++.|.+|+.....
T Consensus 151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~----~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~-- 224 (270)
T 1rwi_B 151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV----LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-- 224 (270)
T ss_dssp SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE----CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC--
T ss_pred CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe----ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc--
Confidence 67889999999977777778899999987653211 11122245667777654 55555668899999987643
Q ss_pred eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717 377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 426 (437)
.......+...+.++++.+++. ++++...++.|+++++..++..
T Consensus 225 -~~~~~~~~~~~p~~i~~~~~g~-----l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 225 -STVLPFTGLNTPLAVAVDSDRT-----VYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp -CEECCCCSCSCEEEEEECTTCC-----EEEEEGGGTEEEEECCCGGGSC
T ss_pred -ceeeccCCCCCceeEEECCCCC-----EEEEECCCCEEEEEcCCCcccc
Confidence 2222223346789999999873 7888889999999999887654
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.58 E-value=1.1e-10 Score=101.87 Aligned_cols=273 Identities=10% Similarity=0.038 Sum_probs=173.4
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEE-ecCCeEEEEeCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTA-HQDCKIRVWQLT 170 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~-~~dg~i~iwd~~ 170 (437)
.+...+.+++++ |+++++...+ .|.+||.. +....... ..+...+.++++.++. ++.+ ..++.|..|+..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPL----PTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEC----SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecC----CcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 556789999998 6666655556 99999988 54433221 1245778999998665 5544 447889999876
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE-
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES- 247 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~- 247 (437)
++. .... + ......+.++++++ .++++...++.|..||. +++....
T Consensus 87 -g~~-~~~~-~---------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~ 135 (299)
T 2z2n_A 87 -GII-KEYT-L---------------------------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE 135 (299)
T ss_dssp -SCE-EEEE-C---------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred -CcE-EEEe-C---------------------------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEec
Confidence 321 1110 0 01345678899987 44444456789999998 5554332
Q ss_pred eecccccEEEEEEecCCeEEE-EeCCCeEEEecCCCCcccceeeE-EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717 248 IKAHEDAVNAVAVSAGGTVYT-GSADRKIRVWAKPFNEKRHALIA-TLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325 (437)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (437)
.......+..+++.+++.+.. ...++.|..||. ... ... ........+..++++++|+++++...++.|.+||
T Consensus 136 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 136 LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD----ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT 210 (299)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC----EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc----EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence 223445789999999999544 445789999987 222 111 1233445688999999998777776788999999
Q ss_pred CCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCce
Q 013717 326 REDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV 403 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 403 (437)
. +++.. .. ....+...+.++.++++ ++++...++.|.+||.. +. .. ...+..+...+.++++ +++.
T Consensus 211 ~-~g~~~-~~--~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~-~~~~~~~~~~~~~i~~-~~g~---- 278 (299)
T 2z2n_A 211 T-SGEIT-EF--KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IE-EYPIQIKSAEPHGICF-DGET---- 278 (299)
T ss_dssp T-TCCEE-EE--ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EE-EEECSSSSCCEEEEEE-CSSC----
T ss_pred C-CCcEE-EE--ECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eE-EEeCCCCCCccceEEe-cCCC----
Confidence 8 54421 11 12334456777777644 44544467889999984 32 11 1223345567999999 6653
Q ss_pred EEEEEecCCCcEEEEeeccC
Q 013717 404 VSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 404 ~~l~s~~~dg~i~iw~~~~~ 423 (437)
++++.. .+.|..++.+..
T Consensus 279 -l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 279 -IWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp -EEEEET-TTEEEEEEEC--
T ss_pred -EEEEec-CCcEEEEEcCcc
Confidence 444444 567777777654
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.58 E-value=1.1e-11 Score=117.13 Aligned_cols=271 Identities=11% Similarity=0.108 Sum_probs=177.7
Q ss_pred CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC--CCcccccccccC
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT--PTKHHKLKTTLP 182 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~--~~~~~~~~~~~~ 182 (437)
+.++++...+ .|.++|..++ +.+..+. ....+..+.|++++ +++++.|+.|.+||+. +.+....+.
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~--~v~~~i~----~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~--- 237 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTY--EIKTVLD----TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK--- 237 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTC--CEEEEEE----CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE---
T ss_pred ceEEEEeCCCCeEEEEECCCC--eEEEEEe----CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe---
Confidence 3455555566 9999999985 3344442 23456789999775 7888899999999995 444332221
Q ss_pred ccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC----C--CeEEEEE-CCCcEEEEECCCcceEEEeecc----
Q 013717 183 TVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN----N--GLIYSVS-WDKSLKIWRASDLRCLESIKAH---- 251 (437)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~---- 251 (437)
.......++++ | ++++++. .+++|.++|..+.+.+..+...
T Consensus 238 ----------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~ 289 (567)
T 1qks_A 238 ----------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 289 (567)
T ss_dssp ----------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred ----------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc
Confidence 22345688888 4 5666655 5699999999999998877521
Q ss_pred -------cccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcE
Q 013717 252 -------EDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSI 321 (437)
Q Consensus 252 -------~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i 321 (437)
...+..+..++++. ++....+|.|.++|...... ..+..+. .......+.|+|+|++++++. .++.|
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~--~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V 366 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN--LKTTEIS-AERFLHDGGLDGSHRYFITAANARNKL 366 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE--EEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEE
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc--ceeeeee-ccccccCceECCCCCEEEEEeCCCCeE
Confidence 22678888888766 55666779999998764321 1122222 344577899999999887765 57899
Q ss_pred EEEECCCCccceEEee-eecccccceEEE-EeeCC-EEEEEe-CCCcEEEeeCCCCC----CeeeeeeecCCCCCeeEEE
Q 013717 322 LVWDREDSANHMVVTG-ALRGHGKAILCL-INVAG-LLMSGS-ADRTVRIWQRGSDG----RFGCLAVLEGHTKPVKSLT 393 (437)
Q Consensus 322 ~i~d~~~~~~~~~~~~-~~~~~~~~i~~~-~~~~~-~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~ 393 (437)
.++|+.+++....... ....|.+.-..+ ...+. +++++. .++.|.++|....+ .++.+.++......-..|.
T Consensus 367 ~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~ 446 (567)
T 1qks_A 367 VVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIK 446 (567)
T ss_dssp EEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred EEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEE
Confidence 9999998764333221 122344323233 33323 444543 46899999998733 1556777765544434567
Q ss_pred EEccCCCCceEEEEEecC-------CCcEEEEeeccC
Q 013717 394 AVTEEGQNGVVSVFSGSL-------DGEIRAWQVSVS 423 (437)
Q Consensus 394 ~~~~~~~~~~~~l~s~~~-------dg~i~iw~~~~~ 423 (437)
.+|++. +|..... .+.|.++|+.+.
T Consensus 447 ~~p~~~-----~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 447 THPNSQ-----YLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CCTTCS-----EEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred eCCCCC-----eEEEecCCCCCcccCceEEEEECCcc
Confidence 888875 4444331 459999999876
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=4.4e-12 Score=124.93 Aligned_cols=240 Identities=10% Similarity=0.067 Sum_probs=157.9
Q ss_pred CCcccEEEEEEeCCe--EEEEecC-C----eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717 140 SSSGSVKSVTFCDGK--IFTAHQD-C----KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG 212 (437)
Q Consensus 140 ~h~~~v~~l~~~~~~--l~s~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (437)
+|...+..++|+|++ |+.+..+ | .|++||+.+++...... ..
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-------------------------------~~ 170 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-------------------------------ER 170 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-------------------------------EE
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-------------------------------cC
Confidence 455678999999876 5554433 3 89999999886433211 11
Q ss_pred CcEEEEEeCC--CeEEEEECCCc----------------EEEEECCCcce--EEEee--cccccEEEEEEecCCe-EEEE
Q 013717 213 DAVTGLAVNN--GLIYSVSWDKS----------------LKIWRASDLRC--LESIK--AHEDAVNAVAVSAGGT-VYTG 269 (437)
Q Consensus 213 ~~v~~~~~~~--~~l~~~~~dg~----------------i~iwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~-l~~~ 269 (437)
..+..++|+| +.|+.+..++. |++|++.+++. ...+. .+...+..+.|+|||+ |+.+
T Consensus 171 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 250 (710)
T 2xdw_A 171 VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (710)
T ss_dssp ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEE
Confidence 1255788987 78888887765 99999988762 22222 2455688999999998 6665
Q ss_pred eC-----CCeEEEecCCC------CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC----CcEEEEECCCCcc-ce
Q 013717 270 SA-----DRKIRVWAKPF------NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD----RSILVWDREDSAN-HM 333 (437)
Q Consensus 270 ~~-----dg~v~iwd~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~-~~ 333 (437)
+. +..|.+||+.. ... ....+..+...+.. .|+|+|+.|+..+.+ +.|.+||+.++.. ..
T Consensus 251 ~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 251 IREGCDPVNRLWYCDLQQESNGITGIL---KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW 326 (710)
T ss_dssp EECSSSSCCEEEEEEGGGSSSSSCSSC---CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred EEccCCCccEEEEEECcccccccCCcc---ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence 54 57899999864 211 23334445555544 488899887766553 3699999987642 11
Q ss_pred EEeeeecccc--cceEEEEee-CC-EEEEEeCCCc--EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717 334 VVTGALRGHG--KAILCLINV-AG-LLMSGSADRT--VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF 407 (437)
Q Consensus 334 ~~~~~~~~~~--~~i~~~~~~-~~-~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~ 407 (437)
.. +..|. ..+..+.+. ++ ++++...|+. |++|++.+++ .+..+..+.+.|..+.++|+++. +++
T Consensus 327 ~~---l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~---~~~~l~~~~~~v~~~~~s~d~~~----l~~ 396 (710)
T 2xdw_A 327 KV---LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA---LLKIFPLEVGSVVGYSGQKKDTE----IFY 396 (710)
T ss_dssp EE---EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC---EEEEECCCSSEEEEEECCTTCSE----EEE
T ss_pred ee---ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC---EEEecCCCCceEEEEecCCCCCE----EEE
Confidence 11 12232 256667776 44 7777777874 5667775555 55667777778889999987653 454
Q ss_pred Eec---CCCcEEEEeeccCC
Q 013717 408 SGS---LDGEIRAWQVSVSC 424 (437)
Q Consensus 408 s~~---~dg~i~iw~~~~~~ 424 (437)
+.+ ..+.|++||+.+++
T Consensus 397 ~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 397 QFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECSSCCCEEEEEETTSSS
T ss_pred EEeCCCCCCEEEEEECCCCc
Confidence 443 35789999998776
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.58 E-value=9.9e-13 Score=129.16 Aligned_cols=274 Identities=9% Similarity=0.029 Sum_probs=168.5
Q ss_pred EeeCCEEEEEecC------eEEEEeCCCCceeeeecccc-CCCCcccEEEEEEeCCe--EE-----EEecCCeEEEEeCC
Q 013717 105 AVHHNFLYAASSH------EINVYDRTGTTWTSINTFND-NDSSSGSVKSVTFCDGK--IF-----TAHQDCKIRVWQLT 170 (437)
Q Consensus 105 ~~~~~~l~s~~~d------~v~vwd~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~--l~-----s~~~dg~i~iwd~~ 170 (437)
...|++++....+ .|.+.+...+..+.+..... ..+|...+..++|+|++ |+ .|+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 3457777665542 24444544544444433221 13566789999999876 54 23345689999999
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCc-------------EE
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKS-------------LK 235 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~-------------i~ 235 (437)
+++.... ..+ .......++|+| +.|+.++.|.. |+
T Consensus 156 tg~~~~~-~~~-----------------------------~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 156 SGEWSKV-DVI-----------------------------EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp TCCBCSS-CCB-----------------------------SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred CCCCcCC-ccc-----------------------------CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence 8874310 000 111115678888 68888888776 99
Q ss_pred EEECCCcc----eEEEeecccccEEEEEEecCCe-EEEEeCCC----eEEEecCCCCcccceeeEEeeCccccEEEEEEc
Q 013717 236 IWRASDLR----CLESIKAHEDAVNAVAVSAGGT-VYTGSADR----KIRVWAKPFNEKRHALIATLEKHKSAVNALALS 306 (437)
Q Consensus 236 iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (437)
+|++.+++ .+.....+...+..+.|+|||+ |+.++.++ .|.+||.... . ...+..+...+....+
T Consensus 206 ~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~--~---~~~l~~~~~~~~~~~~- 279 (695)
T 2bkl_A 206 YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK--D---FRLLVKGVGAKYEVHA- 279 (695)
T ss_dssp EEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS--S---CEEEEECSSCCEEEEE-
T ss_pred EEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC--c---eEEeecCCCceEEEEe-
Confidence 99998876 3333334556789999999999 77766655 6666654322 1 2233334445555556
Q ss_pred cCCCEEEEEe---CCCcEEEEECCCCcc--ceEEeeeeccc-ccceEEEEeeCC-EEEEEeCCCcEEEeeCCC-CCCeee
Q 013717 307 DDGTVLFSGA---CDRSILVWDREDSAN--HMVVTGALRGH-GKAILCLINVAG-LLMSGSADRTVRIWQRGS-DGRFGC 378 (437)
Q Consensus 307 ~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~-~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~ 378 (437)
++|.+++... .++.|.+||+.++.. ...+ ...+ ...+..+.+.++ ++++...|+..+||.+.. ++ .
T Consensus 280 ~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l---~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~---~ 353 (695)
T 2bkl_A 280 WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEI---VPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGK---P 353 (695)
T ss_dssp ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEE---ECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCC---E
T ss_pred cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEE---ecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC---e
Confidence 5666444443 258899999977642 1222 1222 345666777665 777888899888886652 33 4
Q ss_pred eeeecCC-CCCeeEEEEEccCCCCceEEEEEec---CCCcEEEEeeccCC
Q 013717 379 LAVLEGH-TKPVKSLTAVTEEGQNGVVSVFSGS---LDGEIRAWQVSVSC 424 (437)
Q Consensus 379 ~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~---~dg~i~iw~~~~~~ 424 (437)
...+..+ .+.|..+++++++.. ++++.+ ..++|++||+.+++
T Consensus 354 ~~~l~~~~~~~v~~~~~s~d~~~----l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 354 VRTVQLPGVGAASNLMGLEDLDD----AYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEECCCSSSSEECCCBSCTTCSE----EEEEEEETTEEEEEEEEETTTCC
T ss_pred eEEecCCCCeEEEEeecCCCCCE----EEEEEcCCCCCCEEEEEECCCCc
Confidence 4555544 567888888887642 444443 35789999998765
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.56 E-value=2.4e-11 Score=114.95 Aligned_cols=326 Identities=11% Similarity=0.049 Sum_probs=198.6
Q ss_pred cccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCc
Q 013717 66 PSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSS 142 (437)
Q Consensus 66 ~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~ 142 (437)
|....+++...++.+.++|..... .+..+.....+..++|+ |+++++++.+ .|.+||+.....+.+..+. ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~-v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~----~G 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYE-IKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK----IG 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCC-EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----CC
T ss_pred CCceEEEEeCCCCeEEEEECCCCe-EEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----cC
Confidence 334456667788999999987643 44444333356788998 8999999988 9999999621134444442 23
Q ss_pred ccEEEEEEe----CCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC-CCc
Q 013717 143 GSVKSVTFC----DGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH-GDA 214 (437)
Q Consensus 143 ~~v~~l~~~----~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 214 (437)
.....++|+ +++ +++.-.+++|.++|..+.+....+........ ....| ...
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~--------------------~~~~~p~~r 299 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD--------------------EQEYHPEPR 299 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTT--------------------TCCEESCCC
T ss_pred CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccc--------------------cccccCCCc
Confidence 356799999 354 44555679999999888765544331100000 00002 225
Q ss_pred EEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EE-EEeCCCeEEEecCCCCcccce
Q 013717 215 VTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VY-TGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 215 v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~-~~~~dg~v~iwd~~~~~~~~~ 288 (437)
+..+..++ .+++....+|.|.++|....+.+.... ........+.|+|+++ ++ +...++.|.++|+.+..
T Consensus 300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k---- 375 (567)
T 1qks_A 300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK---- 375 (567)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE----
T ss_pred eEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc----
Confidence 66666655 456666778999999998764332221 2345677889999998 44 45568999999987553
Q ss_pred eeEEeeC-----ccccEEEEEEccCCCEEE-EEe-CCCcEEEEECCCCccc---eEEeeeecccccce--EEEEeeCCEE
Q 013717 289 LIATLEK-----HKSAVNALALSDDGTVLF-SGA-CDRSILVWDREDSANH---MVVTGALRGHGKAI--LCLINVAGLL 356 (437)
Q Consensus 289 ~~~~~~~-----~~~~i~~~~~~~~~~~l~-~~~-~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~i--~~~~~~~~~l 356 (437)
.+..+.- |.+.-..+ ++|++..++ ++. .++.|.++|....+.. +.....+......- ....+++.++
T Consensus 376 l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l 454 (567)
T 1qks_A 376 LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYL 454 (567)
T ss_dssp EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEE
T ss_pred EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeE
Confidence 3333322 32212122 578755444 443 4689999999863211 22333333322222 3334455577
Q ss_pred EEEeC-------CCcEEEeeCCCCCC---eeeeeeec--------CCCCCeeEEEEEccCCCCceEEEEEec----CCCc
Q 013717 357 MSGSA-------DRTVRIWQRGSDGR---FGCLAVLE--------GHTKPVKSLTAVTEEGQNGVVSVFSGS----LDGE 414 (437)
Q Consensus 357 ~~~~~-------dg~i~iwd~~~~~~---~~~~~~~~--------~h~~~v~~l~~~~~~~~~~~~~l~s~~----~dg~ 414 (437)
.+... .+.|.+||+.+.+. ...+..+. .-...+..+.|++++.. ++++.. .++.
T Consensus 455 ~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~s~~~~~~~~~~ 530 (567)
T 1qks_A 455 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTE----VWFSVWNGKDQESA 530 (567)
T ss_dssp EEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSE----EEEEEECCTTSCCE
T ss_pred EEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCE----EEEEeecCCCCCCc
Confidence 76653 35899999987510 11222221 12357889999999874 566643 4799
Q ss_pred EEEEeeccCCC
Q 013717 415 IRAWQVSVSCP 425 (437)
Q Consensus 415 i~iw~~~~~~~ 425 (437)
|.++|.++.+.
T Consensus 531 i~v~D~~t~~~ 541 (567)
T 1qks_A 531 LVVVDDKTLEL 541 (567)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCceE
Confidence 99999888764
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=4.4e-12 Score=109.21 Aligned_cols=203 Identities=11% Similarity=0.061 Sum_probs=140.7
Q ss_pred CCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC-CcEEEEEeCC--CeEEE
Q 013717 152 DGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG-DAVTGLAVNN--GLIYS 227 (437)
Q Consensus 152 ~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~~ 227 (437)
|+. |++++.|+.|.+||.++++....+. .+. ..+.++.+.+ ++++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~------------------------------~~~~~~~~~~~~~pdG~ilv- 52 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP------------------------------LEKGWECNSVAATKAGEILF- 52 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE------------------------------CCTTCCCCEEEECTTSCEEE-
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC------------------------------CCccCCCcCeEECCCCCEEE-
Confidence 555 8888999999999998887654443 122 3567778877 5555
Q ss_pred EECCCcEEEEECCCcceEEEeecc-cccEEEEEEecCCe-EEEEeC-CCeEEEecCCCCcccceeeEEee------Cccc
Q 013717 228 VSWDKSLKIWRASDLRCLESIKAH-EDAVNAVAVSAGGT-VYTGSA-DRKIRVWAKPFNEKRHALIATLE------KHKS 298 (437)
Q Consensus 228 ~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~-l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~------~~~~ 298 (437)
+.++.|..||. +++.+..+... ...+.++.+.++|. +++.+. ++.|..+|.. + +.+..+. .+..
T Consensus 53 -s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-G----k~l~~~~~~~~~~~~~~ 125 (276)
T 3no2_A 53 -SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-G----EVLSKTEFETGIERPHA 125 (276)
T ss_dssp -ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-S----CEEEEEEECCSCSSGGG
T ss_pred -eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-C----CEEEEEeccCCCCcccc
Confidence 56788999998 89999998854 35788999999999 666666 7778777653 2 2333322 2223
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeee
Q 013717 299 AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGC 378 (437)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 378 (437)
....+++.++|+++++...++.|.+||.+ ++....+... ... .-.....++++++++..++.|..+|..+++ .
T Consensus 126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~--~~~-~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~---~ 198 (276)
T 3no2_A 126 QFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS--GTP-FSSAFLDNGDCLVACGDAHCFVQLNLESNR---I 198 (276)
T ss_dssp SCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS--SCC-CEEEECTTSCEEEECBTTSEEEEECTTTCC---E
T ss_pred cccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC--CCc-cceeEcCCCCEEEEeCCCCeEEEEeCcCCc---E
Confidence 45567789999999999999999999987 7655544321 111 112233456688888888899999999877 4
Q ss_pred eeeecCCC------CCeeEEEEEccCC
Q 013717 379 LAVLEGHT------KPVKSLTAVTEEG 399 (437)
Q Consensus 379 ~~~~~~h~------~~v~~l~~~~~~~ 399 (437)
+.++..+. ..+..++..+++.
T Consensus 199 ~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 199 VRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp EEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred EEEecCCCCCCccccccccceEcCCCC
Confidence 55543221 2367777777764
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=8.8e-12 Score=108.98 Aligned_cols=231 Identities=13% Similarity=0.106 Sum_probs=147.7
Q ss_pred CcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717 141 SSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG 217 (437)
Q Consensus 141 h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (437)
+.....+++|+++. ++++..++.|..|+..++ ...+ ..+...+.+
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~------------------------------~~~~~~~~~ 73 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE------------------------------MHPSHHQNG 73 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE------------------------------ESSCSSEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE------------------------------ECCCCCcce
Confidence 45667899999553 677788999999998865 2111 125567889
Q ss_pred EEeCC--CeEEEEECCCcEEEEECCCcceEEEeecc----cccEEEEEEecCCeEEE-----Ee-------------CCC
Q 013717 218 LAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAH----EDAVNAVAVSAGGTVYT-----GS-------------ADR 273 (437)
Q Consensus 218 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~-----~~-------------~dg 273 (437)
+++++ +++++...++.|.+||..+++........ ...+..++++|+|.++. |+ ..+
T Consensus 74 l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~ 153 (296)
T 3e5z_A 74 HCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR 153 (296)
T ss_dssp EEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred eeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCc
Confidence 99988 44444445689999999888765443221 23467899999999444 33 134
Q ss_pred eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC-CCccceEEeeeecccccceEEEEee
Q 013717 274 KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE-DSANHMVVTGALRGHGKAILCLINV 352 (437)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~i~~~~~~ 352 (437)
.|..++.. + . ...+..+...+..++|+|+|+.+++.+.++.|++|++. +++... ....+..+...+..+.++
T Consensus 154 ~l~~~~~~-g----~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~-~~~~~~~~~~~p~~i~~d 226 (296)
T 3e5z_A 154 WVFRLAPD-G----T-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEY-QGVHFTVEPGKTDGLRVD 226 (296)
T ss_dssp EEEEECTT-S----C-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEE-EEEEECCSSSCCCSEEEB
T ss_pred EEEEECCC-C----C-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcC-CCeEeeCCCCCCCeEEEC
Confidence 56666543 1 1 23334456678899999999988777778999999997 332200 011112233334445555
Q ss_pred --CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE-ccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 353 --AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 353 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
++++++. ++.|.+||.. ++ .+..+..+.. +++++|. +++. .|+.++.+ .+.-++.++.
T Consensus 227 ~~G~l~v~~--~~~v~~~~~~-g~---~~~~~~~~~~-~~~~~f~~~d~~-----~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 227 AGGLIWASA--GDGVHVLTPD-GD---ELGRVLTPQT-TSNLCFGGPEGR-----TLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp TTSCEEEEE--TTEEEEECTT-SC---EEEEEECSSC-CCEEEEESTTSC-----EEEEEETT-EEEEEECSCC
T ss_pred CCCCEEEEc--CCeEEEECCC-CC---EEEEEECCCC-ceeEEEECCCCC-----EEEEEcCC-eEEEEEcccc
Confidence 4444444 7889999986 44 5666776766 9999996 5553 56666665 3333344443
No 189
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.53 E-value=4e-11 Score=108.68 Aligned_cols=301 Identities=8% Similarity=0.044 Sum_probs=182.1
Q ss_pred ccccccCCCceeEEecCCCcceeeeec-Cc--------cCCe-EEEEeeCCEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717 69 PSLQKLSPDETINFSSASHLCINSVQL-GH--------KLPI-GCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFND 137 (437)
Q Consensus 69 ~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h--------~~~V-~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~ 137 (437)
..+...+.++.+..++.......-..- +. ...+ ......+..++.++.+ .|..+|.++++..-....
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-- 131 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV-- 131 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC--
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC--
Confidence 344555667888888876544332222 21 2233 3344458888888888 999999998754322222
Q ss_pred CCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717 138 NDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG 217 (437)
Q Consensus 138 ~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (437)
...........++.++.++.++.|..+|..+++........... ........
T Consensus 132 ---~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~---------------------~~~~~~~~---- 183 (376)
T 3q7m_A 132 ---AGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS---------------------LSLRGESA---- 183 (376)
T ss_dssp ---SSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC--------------------------CCCCC----
T ss_pred ---CCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc---------------------eeecCCCC----
Confidence 11111122344677888999999999999988755433211000 00000111
Q ss_pred EEeCCCeEEEEECCCcEEEEECCCcceEEEeeccccc----------EEEEEEecCCeEEEEeCCCeEEEecCCCCcccc
Q 013717 218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDA----------VNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
.......++.+..++.|..+|..+++.+......... +.......++.+++++.++.+..+|..++..
T Consensus 184 ~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~-- 261 (376)
T 3q7m_A 184 PTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI-- 261 (376)
T ss_dssp CEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE--
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE--
Confidence 1222477888888999999999999988776522110 1111111256688888999999999876542
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEE
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRI 367 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~i 367 (437)
+.... ......+.. ++..++.++.++.|..+|..+++....... ............++.|+.++.+|.|++
T Consensus 262 --~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~l~v~~~~g~l~~ 332 (376)
T 3q7m_A 262 --MWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD---LLHRLLTSPVLYNGNLVVGDSEGYLHW 332 (376)
T ss_dssp --EEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT---TTTSCCCCCEEETTEEEEECTTSEEEE
T ss_pred --Eeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc---cCCCcccCCEEECCEEEEEeCCCeEEE
Confidence 22222 122334443 366788888999999999998875443320 111222333445778999999999999
Q ss_pred eeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 368 WQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 368 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
+|..+++ .+.........+.......++ .|+.++.||.|..|+
T Consensus 333 ~d~~tG~---~~~~~~~~~~~~~~~~~~~~~------~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 333 INVEDGR---FVAQQKVDSSGFQTEPVAADG------KLLIQAKDGTVYSIT 375 (376)
T ss_dssp EETTTCC---EEEEEECCTTCBCSCCEEETT------EEEEEBTTSCEEEEE
T ss_pred EECCCCc---EEEEEecCCCcceeCCEEECC------EEEEEeCCCEEEEEe
Confidence 9999887 444444433333322222233 588889999999986
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.50 E-value=4.7e-10 Score=97.88 Aligned_cols=269 Identities=7% Similarity=0.001 Sum_probs=169.1
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
..+.+.+.....++...++.|..++.. .......+ .+...+.+++++ ++++++...+ .|..||.+. ...... +
T Consensus 18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~-~ 94 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIKEYT-L 94 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEE-C
T ss_pred cceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEEEEe-C
Confidence 355666777766666667889999887 33322233 456789999997 6766666656 899999873 232221 1
Q ss_pred ccCCCCcccEEEEEEeCCe-EEE-EecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717 136 NDNDSSSGSVKSVTFCDGK-IFT-AHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD 213 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~~~-l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
......+..+++.++. ++. ...++.|..||. +++...... .....
T Consensus 95 ---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-----------------------------~~~~~ 141 (299)
T 2z2n_A 95 ---PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL-----------------------------PNKGS 141 (299)
T ss_dssp ---SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-----------------------------SSTTC
T ss_pred ---CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC-----------------------------CCCCC
Confidence 1245678999998654 444 445789999998 443221100 11345
Q ss_pred cEEEEEeCC-CeEEE-EECCCcEEEEECCCcceEEE-eecccccEEEEEEecCCeEEEE-eCCCeEEEecCCCCccccee
Q 013717 214 AVTGLAVNN-GLIYS-VSWDKSLKIWRASDLRCLES-IKAHEDAVNAVAVSAGGTVYTG-SADRKIRVWAKPFNEKRHAL 289 (437)
Q Consensus 214 ~v~~~~~~~-~~l~~-~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~ 289 (437)
.+.++++++ ..++. ...++.|..||. +++.... +......+..+++.+++.+..+ ..++.|.+||. .+.. .
T Consensus 142 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~---~ 216 (299)
T 2z2n_A 142 YPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI---T 216 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE---E
T ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE---E
Confidence 678899987 44444 445689999998 6665432 2234456889999999985544 45789999987 3321 1
Q ss_pred eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEee
Q 013717 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQ 369 (437)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd 369 (437)
..........+.+++++++|+++++...++.|.+||.. ++ ...+ ....+...+.++.+....|..+...+.|..++
T Consensus 217 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~--~~~~~~~~~~~i~~~~g~l~v~~~~~~l~~~~ 292 (299)
T 2z2n_A 217 EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IEEY--PIQIKSAEPHGICFDGETIWFAMECDKIGKLT 292 (299)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EEEE--ECSSSSCCEEEEEECSSCEEEEETTTEEEEEE
T ss_pred EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eEEE--eCCCCCCccceEEecCCCEEEEecCCcEEEEE
Confidence 11223345678999999999877766678899999983 32 1111 12233455666666333455454466787787
Q ss_pred CCCC
Q 013717 370 RGSD 373 (437)
Q Consensus 370 ~~~~ 373 (437)
..+.
T Consensus 293 ~~~~ 296 (299)
T 2z2n_A 293 LIKD 296 (299)
T ss_dssp EC--
T ss_pred cCcc
Confidence 7653
No 191
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.50 E-value=1.7e-12 Score=115.73 Aligned_cols=172 Identities=12% Similarity=0.049 Sum_probs=126.6
Q ss_pred CeEEEEee--CCEEEEEecCeEEEEeCCCCc---------eeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEe
Q 013717 100 PIGCIAVH--HNFLYAASSHEINVYDRTGTT---------WTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQ 168 (437)
Q Consensus 100 ~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd 168 (437)
+++.|+++ ..++++|+.+.+++|+++..+ .+.... ..+.. |..|+|.++.|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~----~~lp~-V~~l~fd~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWE----KEIPD-VIFVCFHGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEE----EECTT-EEEEEEETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEE----eeCCC-eeEEEECCCEEEEE-cCCcEEEEE
Confidence 68899998 888999999988889976532 111111 13556 99999933336666 889999999
Q ss_pred CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEe
Q 013717 169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI 248 (437)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (437)
+.+....... ..|...+.++.+.+..++++..||.|.+||+.+++...
T Consensus 113 v~sl~~~~~~------------------------------~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-- 160 (388)
T 1xip_A 113 LEELSEFRTV------------------------------TSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-- 160 (388)
T ss_dssp SSSTTCEEEE------------------------------EECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE--
T ss_pred chhhhccCcc------------------------------ceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc--
Confidence 9876422211 23566788887777569999999999999999887643
Q ss_pred ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEe------e---CccccEEEEEEccCCCEEEE
Q 013717 249 KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATL------E---KHKSAVNALALSDDGTVLFS 314 (437)
Q Consensus 249 ~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~---~~~~~i~~~~~~~~~~~l~~ 314 (437)
+...|+|++|+|+| ++.|..||.+++|+....... ....+ . +|...|.+|.|.+++.++++
T Consensus 161 --~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~--~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 161 --LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEME--KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp --EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEE--EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred --ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCcccc--ccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 44689999999999 788999999999976543210 02233 2 36788999999999988886
No 192
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.50 E-value=2e-12 Score=118.06 Aligned_cols=226 Identities=8% Similarity=-0.045 Sum_probs=135.8
Q ss_pred eeeccccccccccCC---CceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717 62 LQTLPSVPSLQKLSP---DETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT 134 (437)
Q Consensus 62 ~~~~~~~~~~~s~s~---dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~ 134 (437)
+.++|....++.... +..|.+|+..... ..... ++......+.|+ |++|+.++.+ .|.+||+.+++...+..
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~ 119 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT 119 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTE-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCc-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe
Confidence 456666666554432 3467777775533 23333 443334446777 8899999888 99999999875554443
Q ss_pred cccCCCCcccEEE---E----------------EEeCCe--EEEE-----ecCCeEEEEeCCCCcccccccccCccccce
Q 013717 135 FNDNDSSSGSVKS---V----------------TFCDGK--IFTA-----HQDCKIRVWQLTPTKHHKLKTTLPTVNDRL 188 (437)
Q Consensus 135 ~~~~~~h~~~v~~---l----------------~~~~~~--l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 188 (437)
. +...... | .++|+. ++.+ ..+..|.+||+.+++....
T Consensus 120 ~-----~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~----------- 183 (396)
T 3c5m_A 120 V-----DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI----------- 183 (396)
T ss_dssp C-----CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE-----------
T ss_pred c-----ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee-----------
Confidence 2 2221111 2 223332 2221 3455777788776543221
Q ss_pred eeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECC------CcEEEEECCCcceEEEeecc-cccEEEE
Q 013717 189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWD------KSLKIWRASDLRCLESIKAH-EDAVNAV 258 (437)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~~ 258 (437)
..+...+..+.|+| ..|+..+.+ ..|.+||+..++........ ...+..+
T Consensus 184 --------------------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 184 --------------------HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp --------------------EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred --------------------ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 12556678888877 345555543 46889998766543332211 2358889
Q ss_pred EEecCCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEe---------------
Q 013717 259 AVSAGGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGA--------------- 316 (437)
Q Consensus 259 ~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--------------- 316 (437)
+|+|+|+ |+.++.+ +.|.+||+..+.. ..+..+. . .. +.|+| ||++++.++
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~---~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMP---P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECC---S-EE-EEEECSSSSEEEEEECCC----------CC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCe--EEeeeCC---C-CC-CCccCCCCceEEEecCCcceeecccccccc
Confidence 9999998 7776544 4599999865431 1222222 1 23 88999 999888754
Q ss_pred -CCCcEEEEECCCCcc
Q 013717 317 -CDRSILVWDREDSAN 331 (437)
Q Consensus 317 -~dg~i~i~d~~~~~~ 331 (437)
.++.|++||+.+++.
T Consensus 317 ~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKSA 332 (396)
T ss_dssp CCCCEEEEEETTTTBC
T ss_pred CCCCcEEEEecccCce
Confidence 347899999987653
No 193
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.50 E-value=4.4e-11 Score=107.05 Aligned_cols=246 Identities=10% Similarity=0.065 Sum_probs=152.5
Q ss_pred CCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEec----C--eEEEEeCCCCceeeeeccccCCCCcccEEE
Q 013717 76 PDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASS----H--EINVYDRTGTTWTSINTFNDNDSSSGSVKS 147 (437)
Q Consensus 76 ~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~----d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~ 147 (437)
.++.|.+|+....... .+ ..+.+++|+ |++|+.++. + .|.+||+.+++...+.. +.. +..
T Consensus 41 ~~~~l~~~d~~~~~~~--~l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~------~~~-~~~ 108 (347)
T 2gop_A 41 YENTIVIENLKNNARR--FI---ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE------AKN-IRS 108 (347)
T ss_dssp EEEEEEEEETTTCCEE--EE---ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE------ESE-EEE
T ss_pred ccceEEEEeCCCCceE--Ec---ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc------CCC-ccc
Confidence 4667888887654322 22 568889999 888887763 2 68899998865544433 223 999
Q ss_pred EEEeCCe--EEEEecC---------------------------CeEEEEeCCCCcccccccccCccccceeeecCCCCee
Q 013717 148 VTFCDGK--IFTAHQD---------------------------CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYV 198 (437)
Q Consensus 148 l~~~~~~--l~s~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (437)
+.|+|+. |+.++.+ ..|.+||+.+++....+.
T Consensus 109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~------------------- 169 (347)
T 2gop_A 109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE------------------- 169 (347)
T ss_dssp EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE-------------------
T ss_pred eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec-------------------
Confidence 9999765 6666532 467888887665311111
Q ss_pred EEeeccceeeecCCCcEEEEEeCC-CeEEEEECCC-------cEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEE
Q 013717 199 TVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDK-------SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTG 269 (437)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~ 269 (437)
. . .+..+.|+| .+++++..++ ...||.+.+++. ..+..+ ..+..+ +|+|+ |+.+
T Consensus 170 -----------~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~ 232 (347)
T 2gop_A 170 -----------K-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLY 232 (347)
T ss_dssp -----------E-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEE
T ss_pred -----------C-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEE
Confidence 1 1 456777877 4444454432 334444435443 344334 555554 99998 7776
Q ss_pred eCC--------CeEEEecCCCCcccceeeEEeeCccccEEE-EEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec
Q 013717 270 SAD--------RKIRVWAKPFNEKRHALIATLEKHKSAVNA-LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR 340 (437)
Q Consensus 270 ~~d--------g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 340 (437)
+.+ ..|.+|| .+ +.......+...+.. +.|+ |+ ++++++.++.+++| +.+++ ... +.
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~----~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-~~~----~~ 298 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GK----EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-IKP----IA 298 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SS----CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-EEE----EE
T ss_pred EccccCCccccceEEEEC--CC----ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-eEE----Ee
Confidence 644 4678887 22 222333445667876 8999 88 88999999999999 87432 211 22
Q ss_pred ccccceEEEEeeCCEEEEEeCCCcE-EEeeCCCCCCeeeeeeecCCCCC
Q 013717 341 GHGKAILCLINVAGLLMSGSADRTV-RIWQRGSDGRFGCLAVLEGHTKP 388 (437)
Q Consensus 341 ~~~~~i~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~~h~~~ 388 (437)
.+...+.++++++.++++++.++.. .||.+. ++ ...+..|...
T Consensus 299 ~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~-g~----~~~lt~~n~~ 342 (347)
T 2gop_A 299 KGRHWIMGFDVDEIVVYLKETATRLRELFTWD-GE----EKQLTDYNDP 342 (347)
T ss_dssp CSSSEEEEEEESSSEEEEEECSSSCCEEEEES-SS----EEECCCTTST
T ss_pred cCCCeEEeeeeeCcEEEEEcCCCChHHheEeC-Cc----EEEeccccHh
Confidence 3466777888777666677777664 777766 32 3445555543
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.50 E-value=1.7e-11 Score=105.57 Aligned_cols=232 Identities=10% Similarity=0.036 Sum_probs=149.5
Q ss_pred CeEEEEee--CCEEE-EEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcc
Q 013717 100 PIGCIAVH--HNFLY-AASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKH 174 (437)
Q Consensus 100 ~V~~l~~~--~~~l~-s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~ 174 (437)
...+++++ +++++ +...+ .|.+||..+....... ..+...+.+|+++++. ++.+..++.|.+||......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-----FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-----CCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-----eCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE
Confidence 66788887 66665 43556 9999998764322211 1234567889998654 65555588999999876532
Q ss_pred cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeeccc
Q 013717 175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHE 252 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 252 (437)
.... ......+.++++++ .++++...++.|.+|+..+...........
T Consensus 100 ~~~~------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~ 149 (270)
T 1rwi_B 100 TVLP------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL 149 (270)
T ss_dssp EECC------------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSC
T ss_pred eeee------------------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccC
Confidence 1110 01234678899987 445554567899999876654433222333
Q ss_pred ccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717 253 DAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN 331 (437)
Q Consensus 253 ~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (437)
..+..+++++++. +++...++.|.+||..... ...........+..++++++|+++++...++.|.+||......
T Consensus 150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~----~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN----QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC----EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred CCceeEEEeCCCCEEEEECCCCEEEEEecCCCc----eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 4678899999999 5555567899999876432 1111122336788999999998777777788999999865432
Q ss_pred ceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCC
Q 013717 332 HMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
.. ....+...+.++.++ ++++++...++.|++|++...+
T Consensus 226 ~~----~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 226 TV----LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EE----CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ee----eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 11 111223456667665 4577888889999999988644
No 195
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.49 E-value=1.7e-11 Score=107.09 Aligned_cols=233 Identities=7% Similarity=-0.003 Sum_probs=148.2
Q ss_pred CccCCeEEEEee--CC-EEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEe-cCCeEEEEeC
Q 013717 96 GHKLPIGCIAVH--HN-FLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAH-QDCKIRVWQL 169 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~-~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~-~dg~i~iwd~ 169 (437)
.+.....+++|+ ++ +++++..+ .|..||..++ ... + ..+...+.++++++++ ++.+. .++.|.+||.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~---~---~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSP---E---MHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEE---E---ESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEE---E---ECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 566678899998 66 77788777 9999999985 322 2 2356779999999765 55554 4689999999
Q ss_pred CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEE----EE-------------C
Q 013717 170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYS----VS-------------W 230 (437)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~----~~-------------~ 230 (437)
.+++......... ......+.++++++ +++++ |. .
T Consensus 98 ~~g~~~~~~~~~~--------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~ 151 (296)
T 3e5z_A 98 PGGEWESIADSFE--------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP 151 (296)
T ss_dssp TTCCEEEEECEET--------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred CCCcEEEEeeccC--------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence 7775332211100 01123456788887 44554 22 1
Q ss_pred CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC
Q 013717 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG 309 (437)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (437)
.+.|..++.. ++ +..+..+......++|+|+++ +++.+.++.|.+||+............+..+...+..++++++|
T Consensus 152 ~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G 229 (296)
T 3e5z_A 152 GRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG 229 (296)
T ss_dssp SCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS
T ss_pred CcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC
Confidence 3456666654 44 344445566789999999998 76667789999999862211101122223345567789999999
Q ss_pred CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee---CCEEEEEeCCCcEEEeeCCC
Q 013717 310 TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV---AGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~iwd~~~ 372 (437)
+++++. ++.|.+||.. ++ ....+..+.. +.++.+. ++.|++++.++ +.-++.++
T Consensus 230 ~l~v~~--~~~v~~~~~~-g~----~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 230 LIWASA--GDGVHVLTPD-GD----ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp CEEEEE--TTEEEEECTT-SC----EEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred CEEEEc--CCeEEEECCC-CC----EEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 866665 7889999986 33 2222333444 6667663 23788777764 44555554
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.46 E-value=3.2e-11 Score=119.33 Aligned_cols=276 Identities=12% Similarity=0.044 Sum_probs=163.0
Q ss_pred eeCCEEEEEecC----eEEEEeC--C---CCceeeeecccc-CCCCcccEEEEEEeCCe--EEEEecC-----CeEEEEe
Q 013717 106 VHHNFLYAASSH----EINVYDR--T---GTTWTSINTFND-NDSSSGSVKSVTFCDGK--IFTAHQD-----CKIRVWQ 168 (437)
Q Consensus 106 ~~~~~l~s~~~d----~v~vwd~--~---~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~--l~s~~~d-----g~i~iwd 168 (437)
..|++++....+ .-.+|-. . .+..+.+..... ..+|...+..+.|+|++ |+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 447777766533 2455544 3 333333322111 12344578899999876 5554432 3699999
Q ss_pred CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCc--------------
Q 013717 169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKS-------------- 233 (437)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~-------------- 233 (437)
+.+++...... +...+..++|+| +.|+.+..++.
T Consensus 196 l~tg~~~~~~~-------------------------------~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (741)
T 1yr2_A 196 VADGKPLADEL-------------------------------KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQT 244 (741)
T ss_dssp TTTCCEEEEEE-------------------------------EEEESCCCEESTTSEEEEEECCCC--------CCCCCE
T ss_pred CCCCCCCCccC-------------------------------CCceeccEEEECCCEEEEEEecCcccccccccCCCCCE
Confidence 99886432100 111123566776 56776665543
Q ss_pred EEEEECCCcce--EEEee--cccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEE
Q 013717 234 LKIWRASDLRC--LESIK--AHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNAL 303 (437)
Q Consensus 234 i~iwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 303 (437)
|++|++.+++. ...+. .+...+..+.|+|||+ |+..+.+ ..|.+||+...... ....+..+...+...
T Consensus 245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~~~~~~ 322 (741)
T 1yr2_A 245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG--PVTALIPDLKAQWDF 322 (741)
T ss_dssp EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC--CCEEEECSSSSCEEE
T ss_pred EEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc--ccEEecCCCCceEEE
Confidence 89999977652 22222 2333588999999998 6666644 38999988643211 023333444444444
Q ss_pred EEccCCCEEEEEeC----CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCC-CCCCee
Q 013717 304 ALSDDGTVLFSGAC----DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRG-SDGRFG 377 (437)
Q Consensus 304 ~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~-~~~~~~ 377 (437)
. +|+|+.|+..+. ++.|.+||+.++. ......+..+...+..+.+.++ ++++...|+..+||.+. .++
T Consensus 323 ~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~--- 396 (741)
T 1yr2_A 323 V-DGVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGK--- 396 (741)
T ss_dssp E-EEETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSC---
T ss_pred E-eccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC---
Confidence 3 488988887765 3459999987642 1122222334445666777666 77788889887777654 233
Q ss_pred eeeeecC-CCCCeeEEEEEccCCCCceEEEEEec---CCCcEEEEeeccCC
Q 013717 378 CLAVLEG-HTKPVKSLTAVTEEGQNGVVSVFSGS---LDGEIRAWQVSVSC 424 (437)
Q Consensus 378 ~~~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~~---~dg~i~iw~~~~~~ 424 (437)
....+.. +.+.|..+.++++++. ++++.+ ..++|++||+.+++
T Consensus 397 ~~~~l~~~~~~~v~~~~~s~d~~~----l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 397 PAGAVSLPGIGSASGLSGRPGDRH----AYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEECBCSSSCEEEEEECCBTCSC----EEEEEEETTEEEEEEEEETTTTE
T ss_pred ceeeccCCCCeEEEEeecCCCCCE----EEEEEcCCCCCCEEEEEECCCCc
Confidence 4445544 3567889999997753 444433 35789999987764
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.45 E-value=2.8e-09 Score=93.00 Aligned_cols=271 Identities=8% Similarity=0.029 Sum_probs=169.9
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEe-cCCeEEEEeCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAH-QDCKIRVWQLT 170 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~-~dg~i~iwd~~ 170 (437)
.....+.+++++ |++.++...+ .|.+||.. ++..... + ..+...+.++++.++. ++.+. .++.|..||..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~-~---~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFE-V---PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE-C---SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEE-C---CCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 445678899998 6666666566 99999988 5444322 1 2344678999998655 55444 47889999987
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE-
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES- 247 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~- 247 (437)
++... .. . ......+.++++++ .++++...++.|..+|.. ++....
T Consensus 92 -g~~~~-~~-~---------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~ 140 (300)
T 2qc5_A 92 -GGFTE-YP-L---------------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD 140 (300)
T ss_dssp -SCEEE-EE-C---------------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred -CCeEE-ec-C---------------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc
Confidence 43211 11 0 01235678888887 444444447899999987 554422
Q ss_pred eecccccEEEEEEecCCeEEEE-eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717 248 IKAHEDAVNAVAVSAGGTVYTG-SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDR 326 (437)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (437)
+......+..+++.+++.+..+ ..++.|..||.. ... ...........+..++++++|++.++....+.|.+||.
T Consensus 141 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~---~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 141 LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GKL---EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCE---EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-CcE---EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 2224567899999999995544 447889999873 221 11122234457899999999987777666778999998
Q ss_pred CCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceE
Q 013717 327 EDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV 404 (437)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 404 (437)
+++... . ....+...+.++..+++ ++++...++.|..||.. +. .. ...+......+.++++.+++.
T Consensus 217 -~g~~~~-~--~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~-~~~~~~~~~~~~~i~~~~~g~----- 284 (300)
T 2qc5_A 217 -TGEISE-Y--DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT-IQ-EYQLQTENAEPHGITFGKDGS----- 284 (300)
T ss_dssp -TCCEEE-E--ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EE-EEECCSTTCCCCCEEECTTSC-----
T ss_pred -CCcEEE-E--ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc-EE-EEECCccCCccceeEeCCCCC-----
Confidence 332211 1 12233455667776643 55555557899999984 33 11 222333456688999988773
Q ss_pred EEEEecCCCcEEEEee
Q 013717 405 SVFSGSLDGEIRAWQV 420 (437)
Q Consensus 405 ~l~s~~~dg~i~iw~~ 420 (437)
++++ +.. .|..++.
T Consensus 285 l~v~-~~~-~i~~~~p 298 (300)
T 2qc5_A 285 VWFA-LKC-KIGKLNL 298 (300)
T ss_dssp EEEE-CSS-EEEEEEE
T ss_pred EEEE-ccC-ceEEeCC
Confidence 4444 434 6666654
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=2.5e-11 Score=104.46 Aligned_cols=186 Identities=10% Similarity=-0.012 Sum_probs=136.0
Q ss_pred CeEEEEECCCcEEEEECCCcceEEEeeccc-ccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCc-cccE
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCLESIKAHE-DAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH-KSAV 300 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~i 300 (437)
+.|++++.++.|.+||.++++.+..+..+. ..+.++.+.|+|+++. +.++.|..||. .+ +.+..+..+ ...+
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G----~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DG----RELWNIAAPAGCEM 79 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TS----CEEEEEECCTTCEE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CC----CEEEEEcCCCCccc
Confidence 678889999999999999999999998665 4789999999999555 56788999986 33 355555544 3578
Q ss_pred EEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeee--cccccce--EEEEeeCCEEEEEeCCCcEEEeeCCCCCC
Q 013717 301 NALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGAL--RGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGR 375 (437)
Q Consensus 301 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~--~~~~~~i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 375 (437)
.++.+.++|+++++.+. ++.|..+|. +++....+.... ..+.... ..+..+++++++...++.|..||.. ++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~- 156 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ- 156 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC-
Confidence 89999999999999887 788888886 444433332110 1111111 2345567799999999999999988 66
Q ss_pred eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 376 FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 376 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.+.++..+ ..+.++...+++. ++++++.+++|..+|.++++.
T Consensus 157 --~~w~~~~~-~~~~~~~~~~~g~-----~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 157 --LLNSVKLS-GTPFSSAFLDNGD-----CLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp --EEEEEECS-SCCCEEEECTTSC-----EEEECBTTSEEEEECTTTCCE
T ss_pred --EEEEEECC-CCccceeEcCCCC-----EEEEeCCCCeEEEEeCcCCcE
Confidence 56666544 3556677777764 788888888898888776654
No 199
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.43 E-value=4.8e-10 Score=101.49 Aligned_cols=269 Identities=11% Similarity=0.077 Sum_probs=168.1
Q ss_pred eeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCC-----CcccEEEEEEeCCeEEEEecCCeEEEEeCCCCccccccc
Q 013717 106 VHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS-----SSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKT 179 (437)
Q Consensus 106 ~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 179 (437)
..+..++.++.+ .|..+|.++++..-......... .......+...++.++.++.++.|..+|..+++......
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 357788888877 99999998864432222210000 112234455567779999999999999999887543332
Q ss_pred ccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccE----
Q 013717 180 TLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAV---- 255 (437)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v---- 255 (437)
.. ...........+.++.++.++.|..+|..+++.+..........
T Consensus 131 ~~------------------------------~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~ 180 (376)
T 3q7m_A 131 VA------------------------------GEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG 180 (376)
T ss_dssp CS------------------------------SCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred CC------------------------------CceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence 10 00001112234788889999999999999999888776332211
Q ss_pred -EEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccc-------cEEEEEEcc--CCCEEEEEeCCCcEEEEE
Q 013717 256 -NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKS-------AVNALALSD--DGTVLFSGACDRSILVWD 325 (437)
Q Consensus 256 -~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~~~~~dg~i~i~d 325 (437)
...... ++.+++++.++.|..+|..++...+. ...... .+..+...| .+..++.++.++.+..+|
T Consensus 181 ~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 181 ESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQ----QRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEE----EECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred CCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEE----EecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 122222 56688889999999999876553222 211100 000011111 245778888899999999
Q ss_pred CCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeec-CCCCCeeEEEEEccCCCCceE
Q 013717 326 REDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLE-GHTKPVKSLTAVTEEGQNGVV 404 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~ 404 (437)
.++++...... ......+...++.++.++.++.|..+|..+++ .+.... .....+....... +
T Consensus 256 ~~tG~~~w~~~------~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~---~~w~~~~~~~~~~~~~~~~~-~------ 319 (376)
T 3q7m_A 256 LRSGQIMWKRE------LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGV---TLWTQSDLLHRLLTSPVLYN-G------ 319 (376)
T ss_dssp TTTCCEEEEEC------CCCEEEEEEETTEEEEEETTCCEEEEETTTCC---EEEEECTTTTSCCCCCEEET-T------
T ss_pred CCCCcEEeecc------CCCCCCceEECCEEEEEcCCCeEEEEECCCCc---EEEeecccCCCcccCCEEEC-C------
Confidence 99887544322 12244566678889999999999999999887 333333 1222233333332 2
Q ss_pred EEEEecCCCcEEEEeeccCCC
Q 013717 405 SVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 405 ~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.|+.++.+|.|.++|..+++.
T Consensus 320 ~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 320 NLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCeEEEEECCCCcE
Confidence 588888999999999888764
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.41 E-value=5e-10 Score=98.57 Aligned_cols=244 Identities=11% Similarity=0.074 Sum_probs=152.3
Q ss_pred CccCCeEEEEee--CCEEEE-------EecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC-e-EEEEecCCe
Q 013717 96 GHKLPIGCIAVH--HNFLYA-------ASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-K-IFTAHQDCK 163 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s-------~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-l~s~~~dg~ 163 (437)
..-....+++|+ ++++++ +..+ .|.+||..+++...... ....++...+.+++++++ . ++.++..+.
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence 334456788887 666666 4566 99999988765443321 011235567899999876 4 676666668
Q ss_pred EEEEeCCCCccccc-ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECC---------
Q 013717 164 IRVWQLTPTKHHKL-KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD--------- 231 (437)
Q Consensus 164 i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d--------- 231 (437)
|.+||.+ ++.... ..... ......+.++++++ +++++...+
T Consensus 94 l~~~d~~-g~~~~~~~~~~~--------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSE--------------------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EEEEETT-SCEEECCSBCTT--------------------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred EEEEeCC-CCEEEEEeccCC--------------------------CccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 9999988 543222 11000 01224577888887 444444333
Q ss_pred ------CcEEEEECCCcceEEEeecccccEEEEEEe----cCCe-EEEE-eCCCeEEEecCCC-Ccc-cceeeEEeeCcc
Q 013717 232 ------KSLKIWRASDLRCLESIKAHEDAVNAVAVS----AGGT-VYTG-SADRKIRVWAKPF-NEK-RHALIATLEKHK 297 (437)
Q Consensus 232 ------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~-l~~~-~~dg~v~iwd~~~-~~~-~~~~~~~~~~~~ 297 (437)
+.|..||.. ++..... .+......++++ |++. ++++ ..++.|.+||+.. +.. .......+..+.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred cccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence 567777765 5543332 334457889999 9996 5444 5689999998752 110 111222333333
Q ss_pred -ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEE-EEeCCCcEEEeeCCCC
Q 013717 298 -SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLM-SGSADRTVRIWQRGSD 373 (437)
Q Consensus 298 -~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~-~~~~dg~i~iwd~~~~ 373 (437)
..+..++++++|+++++...++.|.+||.++++.... +..+...+.++.++ ++.|+ +...++.|..|++...
T Consensus 225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~----~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR----IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEE----EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEE----EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 5688999999999888887888999999875543322 22344567777765 44454 4455688999998753
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.39 E-value=7.4e-10 Score=97.48 Aligned_cols=242 Identities=11% Similarity=0.101 Sum_probs=153.6
Q ss_pred cccEEEEEEeCCe-EEEE--------ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717 142 SGSVKSVTFCDGK-IFTA--------HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG 212 (437)
Q Consensus 142 ~~~v~~l~~~~~~-l~s~--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (437)
-....+++|+++. ++.+ ..++.|.+||..+++...... +. ..++.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--~~------------------------~~~~~ 70 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK--PE------------------------VNGYG 70 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC--CE------------------------ETTEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe--cc------------------------cCCCC
Confidence 3456789998654 5444 678999999987765321110 00 00133
Q ss_pred CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE-eec----ccccEEEEEEecCCeEEEEe-CC------------
Q 013717 213 DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES-IKA----HEDAVNAVAVSAGGTVYTGS-AD------------ 272 (437)
Q Consensus 213 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~l~~~~-~d------------ 272 (437)
..+.++++++ ..++.++..+.|.+||.. ++.... ... ....+.+++++++|.++.+. .+
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~ 149 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred CCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence 5678898877 467777766689999988 665433 221 12358899999999955444 33
Q ss_pred ---CeEEEecCCCCcccceeeEEeeCccccEEEEEEc----cCCCEEEEE-eCCCcEEEEECC-CCccc-eEEeeeeccc
Q 013717 273 ---RKIRVWAKPFNEKRHALIATLEKHKSAVNALALS----DDGTVLFSG-ACDRSILVWDRE-DSANH-MVVTGALRGH 342 (437)
Q Consensus 273 ---g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~-~~~~~~~~~~ 342 (437)
+.|..||.. .. .. .+..+......++++ |+|+.|+.+ ..++.|.+||+. .++.. ......+..+
T Consensus 150 ~~~~~l~~~~~~-g~----~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 150 EKFGSIYCFTTD-GQ----MI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp SSCEEEEEECTT-SC----EE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred CCCCeEEEECCC-CC----EE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence 567777653 21 21 122233456889999 999766555 567899999986 33211 1111222333
Q ss_pred c-cceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 343 G-KAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 343 ~-~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
. .....+.++ +.++++...++.|.+||..+++ .+..+..+...+.++++++++. .++++...++.|..|+
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~i~~~~dg~----~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ---PKMRIRCPFEKPSNLHFKPQTK----TIFVTEHENNAVWKFE 296 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS---CSEEEECSSSCEEEEEECTTSS----EEEEEETTTTEEEEEE
T ss_pred CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc---EeEEEeCCCCCceeEEECCCCC----EEEEEeCCCCeEEEEe
Confidence 2 445566665 4466666678899999988655 4445555667899999988874 2566666778999999
Q ss_pred eccC
Q 013717 420 VSVS 423 (437)
Q Consensus 420 ~~~~ 423 (437)
+...
T Consensus 297 ~~~~ 300 (314)
T 1pjx_A 297 WQRN 300 (314)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8753
No 202
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.39 E-value=9.7e-11 Score=115.35 Aligned_cols=204 Identities=11% Similarity=0.064 Sum_probs=134.6
Q ss_pred CCCcEEEEEeCC--CeEEEEECCC-----cEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCe--------
Q 013717 211 HGDAVTGLAVNN--GLIYSVSWDK-----SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRK-------- 274 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~-------- 274 (437)
|...+..++|+| ++|+.+..++ .|++||+.+++.+..... ...+..++|+|||+ |+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444678899999 6777665443 899999999987664322 22367899999998 888887765
Q ss_pred --------EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-----CCcEEEEECCC------CccceEE
Q 013717 275 --------IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-----DRSILVWDRED------SANHMVV 335 (437)
Q Consensus 275 --------v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~~~~~~ 335 (437)
|.+|++.+.......+.....+...+..+.|+|||++|+.++. +..|++||+.+ +......
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 9999987654332333333334556889999999999988765 56899999976 3211111
Q ss_pred eeeecccccc-eEEEEeeCCEEEEEeCC----CcEEEeeCCCCCCeeeeeeecCCCC--CeeEEEEEccCCCCceEEEEE
Q 013717 336 TGALRGHGKA-ILCLINVAGLLMSGSAD----RTVRIWQRGSDGRFGCLAVLEGHTK--PVKSLTAVTEEGQNGVVSVFS 408 (437)
Q Consensus 336 ~~~~~~~~~~-i~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~l~s 408 (437)
+..+... ...+..+++.|+..+.. +.|.+||+.++.. .....+..|.. .+..++|++++ .++++
T Consensus 282 ---l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-----~lv~~ 352 (710)
T 2xdw_A 282 ---LIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSN-----FLVLC 352 (710)
T ss_dssp ---EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCEEEEEEEETTT-----EEEEE
T ss_pred ---eeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-ccceeccCCCCCCeEEEEEEEcCC-----EEEEE
Confidence 1222222 23466677866655543 3699999987541 12244444544 68889998544 48888
Q ss_pred ecCCCcEE--EEeeccCC
Q 013717 409 GSLDGEIR--AWQVSVSC 424 (437)
Q Consensus 409 ~~~dg~i~--iw~~~~~~ 424 (437)
...|+..+ +|++..++
T Consensus 353 ~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp EEETTEEEEEEEETTTCC
T ss_pred EEECCEEEEEEEECCCCC
Confidence 88898654 45553443
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.39 E-value=1.3e-09 Score=95.03 Aligned_cols=227 Identities=10% Similarity=0.044 Sum_probs=142.5
Q ss_pred CcccEEEEEEeCC--e-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717 141 SSGSVKSVTFCDG--K-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG 217 (437)
Q Consensus 141 h~~~v~~l~~~~~--~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (437)
+..-..+..|+++ . +++...++.|..||..+++... . .....+.+
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-------------------------------~~~~~~~~ 58 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-------------------------------TMDAPVSS 58 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E-------------------------------ECSSCEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E-------------------------------eCCCceEE
Confidence 3345568888863 3 5566678999999998764311 1 13457889
Q ss_pred EEeCC-CeEEEEECCCcEEEEECCCcceEEEeec----ccccEEEEEEecCCeEEEEeCC----------CeEEEecCCC
Q 013717 218 LAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKA----HEDAVNAVAVSAGGTVYTGSAD----------RKIRVWAKPF 282 (437)
Q Consensus 218 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~d----------g~v~iwd~~~ 282 (437)
+++++ ..++.+. ++.|.+||..+++....... ....++.++++|+|++..++.. ..-.+|.+..
T Consensus 59 i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~ 137 (297)
T 3g4e_A 59 VALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP 137 (297)
T ss_dssp EEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred EEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence 99988 4455555 56899999988765433321 1245889999999995555421 2234444432
Q ss_pred CcccceeeEEeeCccccEEEEEEccCCCEEE-EEeCCCcEEEEECC--CCccc-eEEeeeecccccceEEEEee--CCEE
Q 013717 283 NEKRHALIATLEKHKSAVNALALSDDGTVLF-SGACDRSILVWDRE--DSANH-MVVTGALRGHGKAILCLINV--AGLL 356 (437)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~--~~~~~-~~~~~~~~~~~~~i~~~~~~--~~~l 356 (437)
.. ... .+.......+.++|+||++.|+ +.+.++.|.+|++. ++... ......+..+......+..+ +++.
T Consensus 138 ~g---~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 138 DH---HVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLW 213 (297)
T ss_dssp TS---CEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEE
T ss_pred CC---CEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEE
Confidence 22 111 1222345578999999998765 45557889999974 44311 11122222233445556655 4466
Q ss_pred EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE-ccCCCCceEEEEEecC
Q 013717 357 MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSL 411 (437)
Q Consensus 357 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~~~~~l~s~~~ 411 (437)
++....+.|.+||..+++ .+..+..+...+++++|. |++.. ++++...
T Consensus 214 va~~~~~~v~~~d~~tG~---~~~~i~~p~~~~t~~~f~g~d~~~----L~vt~~~ 262 (297)
T 3g4e_A 214 VACYNGGRVIRLDPVTGK---RLQTVKLPVDKTTSCCFGGKNYSE----MYVTCAR 262 (297)
T ss_dssp EEEETTTEEEEECTTTCC---EEEEEECSSSBEEEEEEESGGGCE----EEEEEBC
T ss_pred EEEcCCCEEEEEcCCCce---EEEEEECCCCCceEEEEeCCCCCE----EEEEcCC
Confidence 666667889999998766 666777677789999998 76653 5555543
No 204
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.37 E-value=7.3e-11 Score=104.77 Aligned_cols=291 Identities=14% Similarity=0.097 Sum_probs=178.7
Q ss_pred ccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEE
Q 013717 71 LQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSV 148 (437)
Q Consensus 71 ~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l 148 (437)
+...+.++.+..++ .. ....... .+...+.++... +..|+.++.+ |..+|. ++ +....+ ..........
T Consensus 33 l~v~t~~~~l~~~d-~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~-l~~~d~-~g--~~~~~~---~~~~~~~~~~ 103 (330)
T 3hxj_A 33 IYLGSSNKNLYAIN-TD-GSVKWFFKSGEIIECRPSIGKDGTIYFGSDK-VYAINP-DG--TEKWRF---DTKKAIVSDF 103 (330)
T ss_dssp EECSSTTTTTEEEC-TT-SCEEESSCGGGEEEECCEETTTTEECCSSCE-EEEECC-CG--GGGGGS---CC-----CCE
T ss_pred EEEEcCCCEEEEEC-CC-CcEEEEEecCCCcccceEEecCCcEEEecCc-EEEECC-CC--cEEEEE---ECCCCcccCc
Confidence 44455677788887 33 3333334 344556777776 6677777777 888886 32 222222 1122222333
Q ss_pred EEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEE
Q 013717 149 TFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYS 227 (437)
Q Consensus 149 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~ 227 (437)
.+.++.++.++.++.|..+|.. ++...... .....+.++...+ ..++.
T Consensus 104 ~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~------------------------------~~~~~~~~~~~~~~g~l~v 152 (330)
T 3hxj_A 104 TIFEDILYVTSMDGHLYAINTD-GTEKWRFK------------------------------TKKAIYATPIVSEDGTIYV 152 (330)
T ss_dssp EEETTEEEEECTTSEEEEECTT-SCEEEEEE------------------------------CSSCCCSCCEECTTSCEEE
T ss_pred eEECCEEEEEecCCEEEEEcCC-CCEEEEEc------------------------------CCCceeeeeEEcCCCEEEE
Confidence 3446678889889999999987 54322211 1222334445554 67888
Q ss_pred EECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc
Q 013717 228 VSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD 307 (437)
Q Consensus 228 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (437)
++.++.|..+|.. ++.+..+......+.++...+++.+..++ +.|..+| .... ...........+.++...+
T Consensus 153 gt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~----~~~~~~~~~~~~~~~~~~~ 224 (330)
T 3hxj_A 153 GSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGT----EKWNFYAGYWTVTRPAISE 224 (330)
T ss_dssp ECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSC----EEEEECCSSCCCSCCEECT
T ss_pred EcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCc----EEEEEccCCcceeceEECC
Confidence 8888999999998 88777776556667778887888877777 8889998 3332 3333444445677888888
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee-CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC
Q 013717 308 DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV-AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT 386 (437)
Q Consensus 308 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 386 (437)
+|. |..++.++.|..+|. +++..... ......+..+..+ +..|..++.+|.|..+|. +++ .+..+....
T Consensus 225 ~g~-l~v~t~~~gl~~~~~-~g~~~~~~----~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~---~~~~~~~~~ 294 (330)
T 3hxj_A 225 DGT-IYVTSLDGHLYAINP-DGTEKWRF----KTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGT---EKWNFETGS 294 (330)
T ss_dssp TSC-EEEEETTTEEEEECT-TSCEEEEE----ECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSC---EEEEEECSS
T ss_pred CCe-EEEEcCCCeEEEECC-CCCEeEEe----eCCCCccccceEcCCCeEEEecCCCCEEEECC-CCc---EEEEEEcCC
Confidence 875 555667788888874 33322222 1112222223334 457888899989999995 444 344444445
Q ss_pred CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 387 KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 387 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
..+.++...+++ .|..++.+|.+++...+..++
T Consensus 295 ~~~~~~~~d~~g------~l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 295 WIIATPVIDENG------TIYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp CCCSCCEECTTC------CEEEECTTSCEEEEEC-----
T ss_pred ccccceEEcCCC------EEEEEcCCCeEEEEecccccc
Confidence 567777766665 477899999999988776544
No 205
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.37 E-value=2.5e-11 Score=119.23 Aligned_cols=199 Identities=9% Similarity=-0.018 Sum_probs=130.5
Q ss_pred cCCCcEEEEEeCC--CeEEE-----EECCCcEEEEECCCcceEEEeecccccE--EEEEEecCCe-EEEEeCCCe-----
Q 013717 210 EHGDAVTGLAVNN--GLIYS-----VSWDKSLKIWRASDLRCLESIKAHEDAV--NAVAVSAGGT-VYTGSADRK----- 274 (437)
Q Consensus 210 ~~~~~v~~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~-l~~~~~dg~----- 274 (437)
+|...+..++|+| ++|+. |+.+..|++||+.+++.+.. .+...+ ..++|+|||+ |+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 3555788999999 66663 33446899999999886411 111222 6789999998 888888765
Q ss_pred --------EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC----cEEEEECCCCccceEEeeeeccc
Q 013717 275 --------IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR----SILVWDREDSANHMVVTGALRGH 342 (437)
Q Consensus 275 --------v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~ 342 (437)
|++|++.+......++.....+...+..+.|+|||++|+.++.++ .|++++..+++ ...+.. +
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~----~ 270 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVK----G 270 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEE----C
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeec----C
Confidence 999999765543345544445556789999999999998887666 67777665443 222221 2
Q ss_pred ccceEE-EEeeCCEEEEEe---CCCcEEEeeCCCCCCeeeeeeecCC-CCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717 343 GKAILC-LINVAGLLMSGS---ADRTVRIWQRGSDGRFGCLAVLEGH-TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA 417 (437)
Q Consensus 343 ~~~i~~-~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i 417 (437)
...+.. +..++++++... .++.|.+||+.+++.......+..+ ...|..++|+ ++ .++++...|+..++
T Consensus 271 ~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-----~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 271 VGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-----HLSLEYLKDATSEV 344 (695)
T ss_dssp SSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-----EEEEEEEETTEEEE
T ss_pred CCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-----EEEEEEEECCEEEE
Confidence 222222 234455333333 2578999999875421112223333 4568888887 33 48999999999999
Q ss_pred Eeec
Q 013717 418 WQVS 421 (437)
Q Consensus 418 w~~~ 421 (437)
|.++
T Consensus 345 ~~~~ 348 (695)
T 2bkl_A 345 RVAT 348 (695)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9776
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.33 E-value=1.8e-08 Score=87.79 Aligned_cols=264 Identities=9% Similarity=0.042 Sum_probs=162.2
Q ss_pred ceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFN 136 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~ 136 (437)
.+...+.....++...++.|..++.. .......+ .+...+.+++++ ++++++...+ .|..||.. ++..... .
T Consensus 24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~-~- 99 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYP-L- 99 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE-C-
T ss_pred eeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEec-C-
Confidence 45566666666666677889988877 33222233 445788999998 6666665556 89999988 4333221 1
Q ss_pred cCCCCcccEEEEEEeCCe-EEEE-ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717 137 DNDSSSGSVKSVTFCDGK-IFTA-HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA 214 (437)
Q Consensus 137 ~~~~h~~~v~~l~~~~~~-l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (437)
......+.++++.++. ++.+ ..++.|..|+.. ++..... + ......
T Consensus 100 --~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~--~---------------------------~~~~~~ 147 (300)
T 2qc5_A 100 --PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD--L---------------------------PNKGSY 147 (300)
T ss_dssp --SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE--C---------------------------SSTTCC
T ss_pred --CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc--C---------------------------CCCCCC
Confidence 1234678999998554 5444 447889999876 4322110 0 013346
Q ss_pred EEEEEeCC-CeEEEEE-CCCcEEEEECCCcceEEE-eecccccEEEEEEecCCeEEEEe-CCCeEEEecCCCCcccceee
Q 013717 215 VTGLAVNN-GLIYSVS-WDKSLKIWRASDLRCLES-IKAHEDAVNAVAVSAGGTVYTGS-ADRKIRVWAKPFNEKRHALI 290 (437)
Q Consensus 215 v~~~~~~~-~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~ 290 (437)
+.++++++ ..++.+. .++.|..+|. +++.... .......+..+++.+++.+..+. ..+.|.+||.. +. ...
T Consensus 148 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~---~~~ 222 (300)
T 2qc5_A 148 PAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GE---ISE 222 (300)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC---EEE
T ss_pred ceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-Cc---EEE
Confidence 78888887 4344444 4788999998 5554432 12334568899999999855554 46789999873 22 111
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEee
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQ 369 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd 369 (437)
.........+.+++++++|++.++...++.|..||.. ++. ... ........+.++..+++ .|..++.. .|..+|
T Consensus 223 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~-~~~--~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~ 297 (300)
T 2qc5_A 223 YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTI-QEY--QLQTENAEPHGITFGKDGSVWFALKC-KIGKLN 297 (300)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-EEE--ECCSTTCCCCCEEECTTSCEEEECSS-EEEEEE
T ss_pred EECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcE-EEE--ECCccCCccceeEeCCCCCEEEEccC-ceEEeC
Confidence 1222345678999999999877766667899999983 321 111 12222344555665533 34444444 666666
Q ss_pred C
Q 013717 370 R 370 (437)
Q Consensus 370 ~ 370 (437)
.
T Consensus 298 p 298 (300)
T 2qc5_A 298 L 298 (300)
T ss_dssp E
T ss_pred C
Confidence 4
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.32 E-value=6e-09 Score=93.68 Aligned_cols=264 Identities=9% Similarity=0.017 Sum_probs=159.1
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe----------cCCeEEEEeCCCCcccccccccCccc
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH----------QDCKIRVWQLTPTKHHKLKTTLPTVN 185 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~ 185 (437)
.|.+||..+++ .+..+. ....+ .++++|++ ++.+. .++.|.+||..+.+....+.....
T Consensus 48 ~v~v~D~~t~~--~~~~i~---~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~-- 118 (373)
T 2mad_H 48 QQWVLDAGSGS--ILGHVN---GGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA-- 118 (373)
T ss_pred EEEEEECCCCe--EEEEec---CCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc--
Confidence 67899998853 444442 12223 89999776 55553 367899999987654433321000
Q ss_pred cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC--CCcEEEEECCCcceEEE-eecccccEEEEEE
Q 013717 186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW--DKSLKIWRASDLRCLES-IKAHEDAVNAVAV 260 (437)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~ 260 (437)
.+. .+......+.++| ++|+++.. ++.|.++| .+++.+.. +.. .. ++.+
T Consensus 119 -------------------~~~--~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~ 172 (373)
T 2mad_H 119 -------------------PRF--DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHI 172 (373)
T ss_pred -------------------ccc--ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEE
Confidence 000 0112344788887 78887764 57899999 99998877 642 22 2445
Q ss_pred ecCCe--EEEEeCCCeEEEecCCCCcccceee--EEeeCcccc-EEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEE
Q 013717 261 SAGGT--VYTGSADRKIRVWAKPFNEKRHALI--ATLEKHKSA-VNALALSDDGTVLFSGACDRSILVWDREDSANHMVV 335 (437)
Q Consensus 261 ~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (437)
.|++. +++.+.||.+.++|. ......... ..+ ....+ .....+.+++..++..+..+.+.+.|+.......
T Consensus 173 ~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v-- 248 (373)
T 2mad_H 173 HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN-- 248 (373)
T ss_pred EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE--
Confidence 56654 777888999999988 443211100 001 11122 2334566766555555578899999997543221
Q ss_pred eeeec------------ccccceEEEEeeCCEEEEEeC----------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717 336 TGALR------------GHGKAILCLINVAGLLMSGSA----------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT 393 (437)
Q Consensus 336 ~~~~~------------~~~~~i~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 393 (437)
...+. ........+..+++.++++.. ++.|.++|..+.+ .+..+.. .....+++
T Consensus 249 ~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~---vv~~i~~-g~~p~~i~ 324 (373)
T 2mad_H 249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---TSSQISL-GHDVDAIS 324 (373)
T ss_pred eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE---EEEEEEC-CCCcCeEE
Confidence 11111 111122344555565555432 3579999999866 5555542 33688999
Q ss_pred EEccCCCCceEEEEEec-CCCcEEEEeeccCCCCCC
Q 013717 394 AVTEEGQNGVVSVFSGS-LDGEIRAWQVSVSCPNSS 428 (437)
Q Consensus 394 ~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~ 428 (437)
|+|++.. +++++. .++.|.+||+.+.+....
T Consensus 325 ~s~Dg~~----~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 325 VAQDGGP----DLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ECCCCCe----EEEEEcCCCCeEEEEECCCCCEEee
Confidence 9999852 566666 589999999998875443
No 208
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.32 E-value=6.4e-11 Score=105.64 Aligned_cols=164 Identities=13% Similarity=0.050 Sum_probs=119.9
Q ss_pred cEEEEEeCC--CeEEEEECCCcEEEEECCCcc-----------eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEec
Q 013717 214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLR-----------CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWA 279 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd 279 (437)
+++.+++++ +++++|+.+ .+.+|+++..+ ..... .+.. |+.++| ++. |+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 578888887 888888887 56669876443 11222 3555 999999 666 7777 889999999
Q ss_pred CCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEE
Q 013717 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSG 359 (437)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 359 (437)
++... . ......+...+.++.+.+. .+++++.||.|.+||+.++... . +...|.|++|+++-++.|
T Consensus 113 v~sl~-~---~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~----~----~~~~Vs~v~WSpkG~~vg 178 (388)
T 1xip_A 113 LEELS-E---FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK----Q----LAQNVTSFDVTNSQLAVL 178 (388)
T ss_dssp SSSTT-C---EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE----E----EEESEEEEEECSSEEEEE
T ss_pred chhhh-c---cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc----c----ccCCceEEEEcCCceEEE
Confidence 87544 2 2233445667888877754 3888899999999999876532 1 346789999998878899
Q ss_pred eCCCcEEEeeCCCCCCeeeeeee------c---CCCCCeeEEEEEccC
Q 013717 360 SADRTVRIWQRGSDGRFGCLAVL------E---GHTKPVKSLTAVTEE 398 (437)
Q Consensus 360 ~~dg~i~iwd~~~~~~~~~~~~~------~---~h~~~v~~l~~~~~~ 398 (437)
..||.+++|+...... ....++ . +|...|.+|.|.+++
T Consensus 179 ~~dg~i~~~~~~~~~~-~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEM-EKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp ETTSCEEEEEEETTEE-EEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred EcCCcEEEEcCCCccc-cccceecCCcccccccCCCeeEEEEEEecCC
Confidence 9999999998876441 003334 3 478899999999876
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.30 E-value=1.6e-08 Score=88.11 Aligned_cols=218 Identities=9% Similarity=0.044 Sum_probs=136.3
Q ss_pred ccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCC
Q 013717 97 HKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTP 171 (437)
Q Consensus 97 h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~ 171 (437)
+..---+..|+ +.++++...+ .|..||..++.... + .....+.+++++++. ++.+. ++.|.+||.++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---~----~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---V----TMDAPVSSVALRQSGGYVATI-GTKFCALNWKE 82 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---E----ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---E----eCCCceEEEEECCCCCEEEEE-CCeEEEEECCC
Confidence 33445677787 4556666666 99999998864322 2 134678999999765 66665 56899999987
Q ss_pred CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEEC----------CCcEEEEECC
Q 013717 172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSW----------DKSLKIWRAS 240 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~----------dg~i~iwd~~ 240 (437)
++......... ......++++++++ ..++.+.. ...-.+|.+.
T Consensus 83 g~~~~~~~~~~--------------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d 136 (297)
T 3g4e_A 83 QSAVVLATVDN--------------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLF 136 (297)
T ss_dssp TEEEEEEECCT--------------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEEC
T ss_pred CcEEEEEecCC--------------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEE
Confidence 65322211000 00223578888888 44444431 1233455443
Q ss_pred C-cceEEEeecccccEEEEEEecCCe-E-EEEeCCCeEEEecCC--CCccc-ceeeEEeeCccccEEEEEEccCCCEEEE
Q 013717 241 D-LRCLESIKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKP--FNEKR-HALIATLEKHKSAVNALALSDDGTVLFS 314 (437)
Q Consensus 241 ~-~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~--~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (437)
. ++.. .+.......+.++|+|+++ + ++.+.++.|.+||+. .+... .+....+......+..++++++|++.++
T Consensus 137 ~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva 215 (297)
T 3g4e_A 137 PDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA 215 (297)
T ss_dssp TTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE
T ss_pred CCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE
Confidence 2 3332 2333445578999999997 4 556668999999874 22111 1222333334567889999999988888
Q ss_pred EeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC
Q 013717 315 GACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA 353 (437)
Q Consensus 315 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 353 (437)
...++.|.+||..+++. ...+..+...+.+++|.+
T Consensus 216 ~~~~~~v~~~d~~tG~~----~~~i~~p~~~~t~~~f~g 250 (297)
T 3g4e_A 216 CYNGGRVIRLDPVTGKR----LQTVKLPVDKTTSCCFGG 250 (297)
T ss_dssp EETTTEEEEECTTTCCE----EEEEECSSSBEEEEEEES
T ss_pred EcCCCEEEEEcCCCceE----EEEEECCCCCceEEEEeC
Confidence 77788899999987763 333344456678888874
No 210
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=9.5e-09 Score=90.87 Aligned_cols=220 Identities=12% Similarity=0.032 Sum_probs=135.8
Q ss_pred EEEEEEeCC--e-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 145 VKSVTFCDG--K-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 145 v~~l~~~~~--~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
..+..|+++ . +++...++.|..||..+++... . .....+.++.+.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-------------------------------~~~~~v~~i~~~ 98 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H-------------------------------ALPFMGSALAKI 98 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-------------------------------ECSSCEEEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E-------------------------------ECCCcceEEEEe
Confidence 456778864 3 5666678899999988764211 1 123468888887
Q ss_pred C-CeEEEEECCCcEEEEECCCcceEEEeec----ccccEEEEEEecCCeEEEEeC-------CCeEEEecCCCCccccee
Q 013717 222 N-GLIYSVSWDKSLKIWRASDLRCLESIKA----HEDAVNAVAVSAGGTVYTGSA-------DRKIRVWAKPFNEKRHAL 289 (437)
Q Consensus 222 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~-------dg~v~iwd~~~~~~~~~~ 289 (437)
+ ..++.++.+ .|.+||..+++....... ....+..++++|+|.++.++. .+.|..++ . . +.
T Consensus 99 ~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~-g----~~ 171 (326)
T 2ghs_A 99 SDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K-G----KV 171 (326)
T ss_dssp ETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T-T----EE
T ss_pred CCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C-C----cE
Confidence 7 555556654 499999988875433221 123588999999999555543 24555554 1 1 11
Q ss_pred eEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECC--CC-ccce-EEeeeecccccceEEEEee--CCEEEEEeCC
Q 013717 290 IATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDRE--DS-ANHM-VVTGALRGHGKAILCLINV--AGLLMSGSAD 362 (437)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~-~~~~-~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d 362 (437)
..+.........++|+|||+.|+.+ +.++.|.+||+. ++ .... .....+.........+..+ +.+.++...+
T Consensus 172 -~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~ 250 (326)
T 2ghs_A 172 -TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE 250 (326)
T ss_dssp -EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred -EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC
Confidence 1222233456789999999877555 457899999986 44 2111 1111222223344556665 4455555566
Q ss_pred CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE-ccCCCCceEEEEEecCC
Q 013717 363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLD 412 (437)
Q Consensus 363 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~~~~~l~s~~~d 412 (437)
+.|.+||.. ++ .+..+..+...+++++|. +++. .++++...+
T Consensus 251 ~~v~~~d~~-g~---~~~~i~~~~~~~~~~af~g~d~~----~L~vt~~~~ 293 (326)
T 2ghs_A 251 GAVDRYDTD-GN---HIARYEVPGKQTTCPAFIGPDAS----RLLVTSARE 293 (326)
T ss_dssp TEEEEECTT-CC---EEEEEECSCSBEEEEEEESTTSC----EEEEEEBCT
T ss_pred CEEEEECCC-CC---EEEEEECCCCCcEEEEEecCCCC----EEEEEecCC
Confidence 889999984 44 455666666679999998 6654 245555544
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.29 E-value=1.9e-09 Score=95.73 Aligned_cols=275 Identities=10% Similarity=0.015 Sum_probs=163.7
Q ss_pred CCEEEEEec-----C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe----------cCCeEEEEeC
Q 013717 108 HNFLYAASS-----H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH----------QDCKIRVWQL 169 (437)
Q Consensus 108 ~~~l~s~~~-----d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~dg~i~iwd~ 169 (437)
++.++.... + .|.+.|..++ +.+..+.. ...+ .++++|++ ++.+. .++.|.+||.
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~~t~--~v~~~I~v---G~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDGEAG--RVIGMIDG---GFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTT--EEEEEEEE---CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCEEEEEcCcccCCCCEEEEEECCCC--eEEEEEEC---CCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 444444442 5 8999999984 44455422 1223 39999776 55544 3678999999
Q ss_pred CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC--CCcEEEEECCCcceE
Q 013717 170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW--DKSLKIWRASDLRCL 245 (437)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~ 245 (437)
.+.+....+..-.... .........+.+++ ++++++.. ++.|.++|+.+++.+
T Consensus 117 ~t~~v~~~I~v~~g~r-----------------------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 117 VTLLPTADIELPDAPR-----------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp TTCCEEEEEEETTCCC-----------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CCCeEEEEEECCCccc-----------------------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 9887554432110000 00112334577777 77777764 689999999999999
Q ss_pred EEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee-EEeeCccccEE-EEEEc-cCCCEEEEEeCCCcE
Q 013717 246 ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI-ATLEKHKSAVN-ALALS-DDGTVLFSGACDRSI 321 (437)
Q Consensus 246 ~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~i~-~~~~~-~~~~~l~~~~~dg~i 321 (437)
.++.... . ...+....+ +++.+.||.+.+.++.......... ..+.....++. ...|. ++|++++ .+.+|.|
T Consensus 174 ~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V 249 (386)
T 3sjl_D 174 RMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKI 249 (386)
T ss_dssp EEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEE
T ss_pred EEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEE
Confidence 9886322 1 222322333 7788889999999886522211100 01111112221 23554 6776555 4558999
Q ss_pred EEEECCCCccceEEeeee------------cccccceEEEEeeCCEEEEEeC----------CCcEEEeeCCCCCCeeee
Q 013717 322 LVWDREDSANHMVVTGAL------------RGHGKAILCLINVAGLLMSGSA----------DRTVRIWQRGSDGRFGCL 379 (437)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 379 (437)
++.|+.+.... +...+ .........+...++.++.... .+.|.++|+.+.+ .+
T Consensus 250 ~v~d~~~~~~~--v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k---v~ 324 (386)
T 3sjl_D 250 HQIDLSSGDAK--FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---RL 324 (386)
T ss_dssp EEEECTTSSCE--ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---EE
T ss_pred EEEECCCCcce--eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe---EE
Confidence 99999765422 11111 1112234555555565555432 2479999999977 44
Q ss_pred eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
..+.- ...+..|++++++.. +++++...++.|.++|..+++.
T Consensus 325 ~~i~v-g~~~~~lavs~D~~~---~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 325 AKFEM-GHEIDSINVSQDEKP---LLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp EEEEE-EEEECEEEECSSSSC---EEEEEETTTTEEEEEETTTCCE
T ss_pred EEEEC-CCCcceEEECCCCCe---EEEEEcCCCCeEEEEECCCCcE
Confidence 44432 237889999999853 2455566799999999998864
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=1.8e-09 Score=98.45 Aligned_cols=234 Identities=12% Similarity=0.087 Sum_probs=148.6
Q ss_pred ccEEEEEEeCCe-E-EEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717 143 GSVKSVTFCDGK-I-FTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV 220 (437)
Q Consensus 143 ~~v~~l~~~~~~-l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (437)
.....|+++++. | ++...++.|++||..++....... ...... +++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~-------------------------------~~~~~~-ia~ 178 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP-------------------------------GFKGGK-PAV 178 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE-------------------------------TCCBCB-CEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec-------------------------------cCCCCc-eeE
Confidence 468899998655 4 444556899999998765432221 111222 777
Q ss_pred CC--CeEEEEECCC--cEEEEECCCcceEEEe----ecccccEEEEEEec-CCeEEEEeCCCeEEEecCCCCcccceeeE
Q 013717 221 NN--GLIYSVSWDK--SLKIWRASDLRCLESI----KAHEDAVNAVAVSA-GGTVYTGSADRKIRVWAKPFNEKRHALIA 291 (437)
Q Consensus 221 ~~--~~l~~~~~dg--~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 291 (437)
++ +.|+++..++ .|.+++...+.....+ ......+.+++++| ++.|+++..++.|..||..... ...+.
T Consensus 179 ~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~ 256 (409)
T 3hrp_A 179 TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE--VTLIK 256 (409)
T ss_dssp CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC--EEEEE
T ss_pred ecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC--EEEEe
Confidence 77 6788887766 7999998766544443 21446678899999 6677777788999999986443 11111
Q ss_pred E--eeCccccE-E-EEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeee--cc---------cccceEEEEee--C
Q 013717 292 T--LEKHKSAV-N-ALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGAL--RG---------HGKAILCLINV--A 353 (437)
Q Consensus 292 ~--~~~~~~~i-~-~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~---------~~~~i~~~~~~--~ 353 (437)
. ..+....- . .++|+|+ +.++++-..++.|+.|+.... ...+.... .+ .-.....++++ +
T Consensus 257 ~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG 334 (409)
T 3hrp_A 257 QLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG 334 (409)
T ss_dssp ECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred cccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence 1 11111111 3 8999995 656666667889999997643 22221110 00 01234556665 4
Q ss_pred CEEEEEe-CCCcEEEeeCCCCCCeeeeeeecCC---------------CCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717 354 GLLMSGS-ADRTVRIWQRGSDGRFGCLAVLEGH---------------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA 417 (437)
Q Consensus 354 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~h---------------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i 417 (437)
+++++-. .++.|+.|++.++. +.++.++ -.....|++.+++ .++++-..+++|+.
T Consensus 335 ~lyvad~~~~~~I~~~~~~~G~----v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-----~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 335 NFYIVDGFKGYCLRKLDILDGY----VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-----GYWIAEAWGKAIRK 405 (409)
T ss_dssp CEEEEETTTTCEEEEEETTTTE----EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-----EEEEEESTTCEEEE
T ss_pred CEEEEeCCCCCEEEEEECCCCE----EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-----CEEEEECCCCeEEE
Confidence 5666666 78899999976543 3333333 2468899999986 47788888889998
Q ss_pred Eeec
Q 013717 418 WQVS 421 (437)
Q Consensus 418 w~~~ 421 (437)
++++
T Consensus 406 i~~e 409 (409)
T 3hrp_A 406 YAVE 409 (409)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8764
No 213
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.27 E-value=2.2e-08 Score=97.32 Aligned_cols=336 Identities=9% Similarity=0.046 Sum_probs=188.0
Q ss_pred ccccCCCceeEEecCCCcceeeeecCccC-----------CeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccC
Q 013717 71 LQKLSPDETINFSSASHLCINSVQLGHKL-----------PIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDN 138 (437)
Q Consensus 71 ~~s~s~dg~i~~~~~~~~~~~~~~~~h~~-----------~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~ 138 (437)
+...+.++.+..+|.......-..-.... .-..+++.+..++.++.+ .|..+|..+++..-.......
T Consensus 80 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~ 159 (677)
T 1kb0_A 80 MYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEG 159 (677)
T ss_dssp EEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTT
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcC
Confidence 34445567777777755333322221110 112455568888888888 999999998744322222100
Q ss_pred CCCcccEE-EEEEeCCeEEEEec------CCeEEEEeCCCCcccccccccCccccceeeecCCC--CeeEEeeccceeee
Q 013717 139 DSSSGSVK-SVTFCDGKIFTAHQ------DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPN--SYVTVRRHKKKLWI 209 (437)
Q Consensus 139 ~~h~~~v~-~l~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 209 (437)
......+. .....++.++.++. +|.|+.+|..+++................ ..+. ............+.
T Consensus 160 ~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~--~~~~~~~g~~~w~~~g~~~~ 237 (677)
T 1kb0_A 160 QKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF--EDESMKRAARTWDPSGKWWE 237 (677)
T ss_dssp CCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC--SSHHHHHHHTTSCGGGCHHH
T ss_pred cCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc--cccccccccccccccCceeE
Confidence 00001111 12234566666654 79999999999987655443221100000 0000 00000000000000
Q ss_pred --cCCCcEEEEEeCC--CeEEEEECCC-------------------cEEEEECCCcceEEEeec--cc-------ccEEE
Q 013717 210 --EHGDAVTGLAVNN--GLIYSVSWDK-------------------SLKIWRASDLRCLESIKA--HE-------DAVNA 257 (437)
Q Consensus 210 --~~~~~v~~~~~~~--~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--~~-------~~v~~ 257 (437)
+.......+++++ +.++.+..++ .|..+|..+++.+..++. |. .....
T Consensus 238 ~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l 317 (677)
T 1kb0_A 238 AGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMIL 317 (677)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEE
T ss_pred eCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEE
Confidence 1111222455655 6777776553 599999999999888763 21 12222
Q ss_pred EEEecCC---e-EEEEeCCCeEEEecCCCCcccceeeEEeeCc-----------cccE----------------------
Q 013717 258 VAVSAGG---T-VYTGSADRKIRVWAKPFNEKRHALIATLEKH-----------KSAV---------------------- 300 (437)
Q Consensus 258 ~~~~~~~---~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----------~~~i---------------------- 300 (437)
+....+| . ++.++.+|.|.++|..+++. +...... ..++
T Consensus 318 ~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~----l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 318 ADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF----ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCE----EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred EecccCCcEeeEEEEECCCCEEEEEECCCCCE----eccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 3333466 4 88899999999999876653 2222110 0111
Q ss_pred --EEEEEccCCCEEEEEeC-------------------------------------------CCcEEEEECCCCccceEE
Q 013717 301 --NALALSDDGTVLFSGAC-------------------------------------------DRSILVWDREDSANHMVV 335 (437)
Q Consensus 301 --~~~~~~~~~~~l~~~~~-------------------------------------------dg~i~i~d~~~~~~~~~~ 335 (437)
..++++|++.++++... .|.|..||+.+++.....
T Consensus 394 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~ 473 (677)
T 1kb0_A 394 NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV 473 (677)
T ss_dssp CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec
Confidence 15788998888877543 278999999998766554
Q ss_pred eeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC-CCCCeeEEEEEccCCCCceEEEEEecC---
Q 013717 336 TGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG-HTKPVKSLTAVTEEGQNGVVSVFSGSL--- 411 (437)
Q Consensus 336 ~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~~~--- 411 (437)
........ ..+...+.+++.++.||.+++||.++++ .+..+.. +...-.-+.+..++. ++++..+.
T Consensus 474 ~~~~~~~~---g~~~~~g~~v~~g~~dg~l~a~D~~tG~---~lw~~~~~~~~~~~p~~y~~~G~----~~v~~~~G~~~ 543 (677)
T 1kb0_A 474 EHVSPWNG---GTLTTAGNVVFQGTADGRLVAYHAATGE---KLWEAPTGTGVVAAPSTYMVDGR----QYVSVAVGWGG 543 (677)
T ss_dssp EESSSCCC---CEEEETTTEEEEECTTSEEEEEETTTCC---EEEEEECSSCCCSCCEEEEETTE----EEEEEEECCCH
T ss_pred CCCCCCcC---cceEeCCCEEEEECCCCcEEEEECCCCc---eeeeeeCCCCcccCCEEEEeCCE----EEEEEeccCCc
Confidence 32211111 2345567788889999999999999988 5555543 322334455666664 35655333
Q ss_pred -------------CCcEEEEeecc
Q 013717 412 -------------DGEIRAWQVSV 422 (437)
Q Consensus 412 -------------dg~i~iw~~~~ 422 (437)
.+.+..|.+..
T Consensus 544 ~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 544 VYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp HHHHHCCSCSCCCCCEEEEEEETC
T ss_pred cccccccccccCCCCeEEEEeccc
Confidence 47889999874
No 214
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.27 E-value=1.5e-08 Score=98.77 Aligned_cols=327 Identities=12% Similarity=0.058 Sum_probs=179.4
Q ss_pred cccccCCCceeEEecCCCcceeeeecCccC----------Ce-EEEEeeCCEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717 70 SLQKLSPDETINFSSASHLCINSVQLGHKL----------PI-GCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFND 137 (437)
Q Consensus 70 ~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~----------~V-~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~ 137 (437)
.+...+.++.+..+|.......-..-.+.. .+ ..+++.+..++.++.+ .|..+|.++++..-......
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~ 151 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA 151 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecCcC
Confidence 344456677788888765443332221111 11 2244567888889888 99999999874332222110
Q ss_pred CCCCcccEE-EEEEeCCeEEEEe------cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEe--eccceee
Q 013717 138 NDSSSGSVK-SVTFCDGKIFTAH------QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVR--RHKKKLW 208 (437)
Q Consensus 138 ~~~h~~~v~-~l~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 208 (437)
.......+. +-...++.++.++ .+|.|..||..+++........+....... .. ..+... ......+
T Consensus 152 ~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~---~~-~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 152 DHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP---EG-KGMEIAAKTWFGDAY 227 (689)
T ss_dssp CTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC---CS-HHHHHHHTTCCSSTH
T ss_pred CCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc---cc-ccccccccccCCcee
Confidence 000001111 1122356666554 378999999999987655543221100000 00 000000 0000000
Q ss_pred ---ecCCCcEEEEEeCC--CeEEEEECCCc-------------------EEEEECCCcceEEEeec--cc-------ccE
Q 013717 209 ---IEHGDAVTGLAVNN--GLIYSVSWDKS-------------------LKIWRASDLRCLESIKA--HE-------DAV 255 (437)
Q Consensus 209 ---~~~~~~v~~~~~~~--~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~--~~-------~~v 255 (437)
.++......+++++ +.++.+..++. |..+|.++++.+..++. |. ...
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 01111122456665 77888877753 99999999999988763 21 122
Q ss_pred EEEEEecCCe----EEEEeCCCeEEEecCCCCcccceee-------EEee-----------------Cccc---------
Q 013717 256 NAVAVSAGGT----VYTGSADRKIRVWAKPFNEKRHALI-------ATLE-----------------KHKS--------- 298 (437)
Q Consensus 256 ~~~~~~~~~~----l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~-----------------~~~~--------- 298 (437)
.......+|+ ++.++.+|.++++|..+++...... ..+. ....
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~G 387 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWG 387 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccc
Confidence 2222233553 7888999999999987665321100 0000 0000
Q ss_pred --cEEEEEEccCCCEEEEEeC---------------------------------------------CCcEEEEECCCCcc
Q 013717 299 --AVNALALSDDGTVLFSGAC---------------------------------------------DRSILVWDREDSAN 331 (437)
Q Consensus 299 --~i~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~i~d~~~~~~ 331 (437)
.-..++|+|+..++++... +|.|+.||+.+++.
T Consensus 388 g~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~ 467 (689)
T 1yiq_A 388 AHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA 467 (689)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE
T ss_pred ccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe
Confidence 0113788888887776532 47899999999886
Q ss_pred ceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCC-CeeEEEEEccCCCCceEEEEEec
Q 013717 332 HMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK-PVKSLTAVTEEGQNGVVSVFSGS 410 (437)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~l~s~~ 410 (437)
............ -.+...+.+++.|+.||.|+.||.++++ .+..++...+ .-.-+.|..++. +|++..+
T Consensus 468 ~W~~~~~~~~~~---g~~~tagglvf~gt~dg~l~a~D~~tG~---~lw~~~~~~~~~~~p~ty~~~G~----qyv~~~~ 537 (689)
T 1yiq_A 468 AWEVPYVTIFNG---GTLSTAGNLVFEGSADGRVIAYAADTGE---KLWEQPAASGVMAAPVTYSVDGE----QYVTFMA 537 (689)
T ss_dssp EEEEEESSSCCC---CEEEETTTEEEEECTTSEEEEEETTTCC---EEEEEECSSCCCSCCEEEEETTE----EEEEEEE
T ss_pred EeEccCCCCccC---ccceECCCEEEEECCCCcEEEEECCCCc---cceeeeCCCCcccCceEEEECCE----EEEEEEe
Confidence 655432211111 2445567799999999999999999988 5655554322 224466777765 3666553
No 215
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.24 E-value=1.2e-09 Score=108.04 Aligned_cols=199 Identities=10% Similarity=0.001 Sum_probs=128.9
Q ss_pred CCCcEEEEEeCC--CeEEEEECC-----CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCe--------
Q 013717 211 HGDAVTGLAVNN--GLIYSVSWD-----KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRK-------- 274 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~-------- 274 (437)
|...+..++|+| ++|+.+..+ ..|++||+.+++.+... .+...+..++|+|| + |+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 334678899998 677766543 35999999999876542 12222357899999 7 877776553
Q ss_pred ------EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC-----cEEEEECCCCcc--ceEEeeeecc
Q 013717 275 ------IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR-----SILVWDREDSAN--HMVVTGALRG 341 (437)
Q Consensus 275 ------v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~--~~~~~~~~~~ 341 (437)
|.+|++.+.......+.....+...+..+.|+|||++|+..+.++ .|++||+.++.. ...+.. .
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~---~ 315 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP---D 315 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC---S
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC---C
Confidence 889988655433333333333334588999999999988877544 899999977521 222221 1
Q ss_pred cccceEEEEeeCCEEEEEeCC----CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717 342 HGKAILCLINVAGLLMSGSAD----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA 417 (437)
Q Consensus 342 ~~~~i~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i 417 (437)
.......+..+++.|+..+.+ +.|.+||+.++. ......+..+...+..+++.. + .++++...||..+|
T Consensus 316 ~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~~-~-----~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 316 LKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIAG-N-----RLFASYIHDAKSQV 388 (741)
T ss_dssp SSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEEB-T-----EEEEEEEETTEEEE
T ss_pred CCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEEC-C-----EEEEEEEECCEEEE
Confidence 122233345677877766653 459999988742 122333444555677777773 2 48899999999888
Q ss_pred Eeec
Q 013717 418 WQVS 421 (437)
Q Consensus 418 w~~~ 421 (437)
|.++
T Consensus 389 ~~~~ 392 (741)
T 1yr2_A 389 LAFD 392 (741)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8776
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=1.4e-08 Score=92.62 Aligned_cols=232 Identities=9% Similarity=0.027 Sum_probs=142.7
Q ss_pred CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC--eEEEEeCCC
Q 013717 99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC--KIRVWQLTP 171 (437)
Q Consensus 99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg--~i~iwd~~~ 171 (437)
.....|+++ ++++++...+ .|++||.+++....+... ..... ++|+++. |+.+..++ .|.+|+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~------~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG------FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET------CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc------CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence 467789998 6666666666 999999998644433321 12223 8888654 77777655 788888765
Q ss_pred CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE--
Q 013717 172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES-- 247 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~-- 247 (437)
+.....+.... ......+.++++++ ..|+.+..++.|+.||..++.....
T Consensus 204 ~~~~~~~g~~~--------------------------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~ 257 (409)
T 3hrp_A 204 GWAPTRIGQLG--------------------------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQ 257 (409)
T ss_dssp TTCEEEEEECC--------------------------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEE
T ss_pred CceeEEeeecc--------------------------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEec
Confidence 43211110000 01334567788887 6777777889999999987754322
Q ss_pred --eecccccE--EEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCc---------------cccEEEEEEc
Q 013717 248 --IKAHEDAV--NAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH---------------KSAVNALALS 306 (437)
Q Consensus 248 --~~~~~~~v--~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~ 306 (437)
..+....- ..++|+| ++. +++-..++.|+.|+.... ...+.++ -.....++++
T Consensus 258 ~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d 331 (409)
T 3hrp_A 258 LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE------CEWFCGSATQKTVQDGLREEALFAQPNGMTVD 331 (409)
T ss_dssp CCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC
T ss_pred ccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe
Confidence 11222222 3899999 466 566667889999987532 1122111 2347899999
Q ss_pred cCCCEEEEEe-CCCcEEEEECCCCccceEEeee--ecc---------cccceEEEEeeCC--EEEEEeCCCcEEEeeC
Q 013717 307 DDGTVLFSGA-CDRSILVWDREDSANHMVVTGA--LRG---------HGKAILCLINVAG--LLMSGSADRTVRIWQR 370 (437)
Q Consensus 307 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~~~---------~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~ 370 (437)
++|+++++-. .++.|+.|++.++.. ..+... ..+ .-.....++++++ ++++-..++.|+.+++
T Consensus 332 ~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 332 EDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 9999777777 789999999766542 222211 000 0123456666543 5555666677777664
No 217
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.21 E-value=2.9e-08 Score=88.24 Aligned_cols=262 Identities=13% Similarity=0.062 Sum_probs=158.9
Q ss_pred CceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEe----------cC-eEEEEeCCCCceeeeeccccCCC--
Q 013717 77 DETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAAS----------SH-EINVYDRTGTTWTSINTFNDNDS-- 140 (437)
Q Consensus 77 dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~----------~d-~v~vwd~~~~~~~~~~~~~~~~~-- 140 (437)
++.+.+.|.......-..- |.. + . ++++ |++|+.+. .+ .|.+||..+. +.+..+....+
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--~v~~~I~v~~g~r 132 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPR 132 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCC
T ss_pred CCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--eEEEEEECCCccc
Confidence 5788898887654443333 443 3 3 8888 88777765 24 8999999995 33443321110
Q ss_pred --CcccEEEEEEeCCe--EEEEec--CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717 141 --SSGSVKSVTFCDGK--IFTAHQ--DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA 214 (437)
Q Consensus 141 --h~~~v~~l~~~~~~--l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (437)
.......+.+++++ ++.+.. ++.|.++|+.+++....+.. .+
T Consensus 133 ~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-------------------------------~g- 180 (386)
T 3sjl_D 133 FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-------------------------------PD- 180 (386)
T ss_dssp CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-------------------------------CS-
T ss_pred cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-------------------------------CC-
Confidence 12245678999765 555543 68999999999875554421 01
Q ss_pred EEEE-EeCCCeEEEEECCCcEEEEECCC-cceEEEeecc----cccEE-EEEEe-cCCeEEEEeCCCeEEEecCCCCccc
Q 013717 215 VTGL-AVNNGLIYSVSWDKSLKIWRASD-LRCLESIKAH----EDAVN-AVAVS-AGGTVYTGSADRKIRVWAKPFNEKR 286 (437)
Q Consensus 215 v~~~-~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~-~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~ 286 (437)
...+ ....+.+++.+.||.+.+.++.+ ++........ ...+. ...|. ++|+++..+.+|.|.++|+.....
T Consensus 181 ~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~- 259 (386)
T 3sjl_D 181 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA- 259 (386)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-
T ss_pred cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-
Confidence 1111 11226777888999999999976 5553322111 12221 23553 688866678899999999865432
Q ss_pred ceeeEEee---------C-ccccEEEEEEccCCCEEEEEeC----------CCcEEEEECCCCccceEEeeeecccccce
Q 013717 287 HALIATLE---------K-HKSAVNALALSDDGTVLFSGAC----------DRSILVWDREDSANHMVVTGALRGHGKAI 346 (437)
Q Consensus 287 ~~~~~~~~---------~-~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 346 (437)
+....+. + .......++++++++.++.... .+.|.++|+.+.+....+. .++...-
T Consensus 260 -~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~---vg~~~~~ 335 (386)
T 3sjl_D 260 -KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---MGHEIDS 335 (386)
T ss_dssp -EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---EEEEECE
T ss_pred -eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE---CCCCcce
Confidence 1222221 0 1123335777999998888653 2579999999877443332 2222223
Q ss_pred EEEEeeCC-EEEEE-eCCCcEEEeeCCCCCCeeeeeeec
Q 013717 347 LCLINVAG-LLMSG-SADRTVRIWQRGSDGRFGCLAVLE 383 (437)
Q Consensus 347 ~~~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~ 383 (437)
..++.++. +|++. ..++.|.++|..+++ .+.++.
T Consensus 336 lavs~D~~~~ly~tn~~~~~VsViD~~t~k---~~~~i~ 371 (386)
T 3sjl_D 336 INVSQDEKPLLYALSTGDKTLYIHDAESGE---ELRSVN 371 (386)
T ss_dssp EEECSSSSCEEEEEETTTTEEEEEETTTCC---EEEEEC
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECCCCc---EEEEec
Confidence 44555554 56654 458999999999877 555554
No 218
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.21 E-value=4e-07 Score=81.78 Aligned_cols=253 Identities=9% Similarity=-0.031 Sum_probs=151.6
Q ss_pred eeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEe----------cC-eEEEEeCCCCceeeeeccccC-CC---
Q 013717 79 TINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAAS----------SH-EINVYDRTGTTWTSINTFNDN-DS--- 140 (437)
Q Consensus 79 ~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~----------~d-~v~vwd~~~~~~~~~~~~~~~-~~--- 140 (437)
.+.++|..... .+..+ .-..+ .++++ |++|+.+. .+ .|.+||..+. +.+..+... ..
T Consensus 48 ~v~v~D~~t~~-~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--~~~~~i~~~~~~~~~ 122 (373)
T 2mad_H 48 QQWVLDAGSGS-ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFD 122 (373)
T ss_pred EEEEEECCCCe-EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--cEEEEEECCCccccc
Confidence 77888886644 34445 22233 88888 88888875 24 8999999874 333333211 00
Q ss_pred CcccEEEEEEeCCe--EEEEec--CCeEEEEeCCCCccccc-ccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717 141 SSGSVKSVTFCDGK--IFTAHQ--DCKIRVWQLTPTKHHKL-KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV 215 (437)
Q Consensus 141 h~~~v~~l~~~~~~--l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (437)
+......+.++|++ |+.+.. ++.|.++| .+++.... +. ....+
T Consensus 123 ~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-------------------------------~~~~~ 170 (373)
T 2mad_H 123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-------------------------------SPTCY 170 (373)
T ss_pred cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-------------------------------CCceE
Confidence 11345688999765 666653 57899999 88765433 21 11112
Q ss_pred EEEEeCCCeEEEEECCCcEEEEECCCcceEEEee-----cccccE-EEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717 216 TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK-----AHEDAV-NAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v-~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~ 288 (437)
......+..+++.+.||.+.++|. +++...... ....++ ....+.+++. ++..+.++.+.+.|+..... .
T Consensus 171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~--~ 247 (373)
T 2mad_H 171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA--T 247 (373)
T ss_pred EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc--e
Confidence 112222356677788999999999 887664322 111121 2344556554 55555788999998864321 1
Q ss_pred eeEEeeC----------ccccEEEEEEccCCCEEEEEeC----------CCcEEEEECCCCccceEEeeeecccccceEE
Q 013717 289 LIATLEK----------HKSAVNALALSDDGTVLFSGAC----------DRSILVWDREDSANHMVVTGALRGHGKAILC 348 (437)
Q Consensus 289 ~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 348 (437)
.+..+.. .......+.++|+++.++++.. ++.|.++|+.+.+....+ ..++...-..
T Consensus 248 v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i---~~g~~p~~i~ 324 (373)
T 2mad_H 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI---SLGHDVDAIS 324 (373)
T ss_pred EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE---ECCCCcCeEE
Confidence 1222211 1223445789999998887653 357999999877643322 1222233344
Q ss_pred EEeeCC-EEEEEe-CCCcEEEeeCCCCC
Q 013717 349 LINVAG-LLMSGS-ADRTVRIWQRGSDG 374 (437)
Q Consensus 349 ~~~~~~-~l~~~~-~dg~i~iwd~~~~~ 374 (437)
++.+++ +++++. .++.|.+||..+.+
T Consensus 325 ~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 325 VAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred ECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 455566 677776 58999999999877
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=2.4e-09 Score=104.08 Aligned_cols=284 Identities=14% Similarity=0.130 Sum_probs=167.3
Q ss_pred eCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCC------cccEEEEEEeCCeEEEEecCCeEEEEeCCCCccccccc
Q 013717 107 HHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSS------SGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKT 179 (437)
Q Consensus 107 ~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 179 (437)
.+..|+.++.+ .|..+|..+++..=.......... ......+++.++.++.++.|+.|..+|..+++......
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 46777777777 899999988643222221100000 00112455667789999999999999999998655443
Q ss_pred ccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEEC------CCcEEEEECCCcceEEEeecccc
Q 013717 180 TLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSW------DKSLKIWRASDLRCLESIKAHED 253 (437)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~ 253 (437)
........ ......++ +..+.+++++. +|.|+.||..+++.+..+.....
T Consensus 156 ~~~~~~~~--------------------~~~~~~p~----v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~ 211 (677)
T 1kb0_A 156 TFEGQKGS--------------------LTITGAPR----VFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPG 211 (677)
T ss_dssp TTTTCCSS--------------------CBCCSCCE----EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred CCcCcCcC--------------------cccccCcE----EECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCC
Confidence 21000000 00011111 22355565553 79999999999999887763211
Q ss_pred c--------------------------------EEEEEEecCCe-EEEEeCCC-------------------eEEEecCC
Q 013717 254 A--------------------------------VNAVAVSAGGT-VYTGSADR-------------------KIRVWAKP 281 (437)
Q Consensus 254 ~--------------------------------v~~~~~~~~~~-l~~~~~dg-------------------~v~iwd~~ 281 (437)
. ...++++|++. ++.+..++ .|..+|.+
T Consensus 212 ~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~ 291 (677)
T 1kb0_A 212 DPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD 291 (677)
T ss_dssp CTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred CccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC
Confidence 1 12467788766 77776654 48888887
Q ss_pred CCcccceeeEEeeCc-------cccEEEEEEccCC---CEEEEEeCCCcEEEEECCCCccceEEeeeecc-------ccc
Q 013717 282 FNEKRHALIATLEKH-------KSAVNALALSDDG---TVLFSGACDRSILVWDREDSANHMVVTGALRG-------HGK 344 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~ 344 (437)
++...+... ...| ......+....+| ..++.++.+|.++++|.++++........... ...
T Consensus 292 TG~~~W~~~--~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~ 369 (677)
T 1kb0_A 292 TGKYKWHYQ--ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGK 369 (677)
T ss_dssp TCCEEEEEE--SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSC
T ss_pred CCCEEEEEe--cCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCc
Confidence 665333221 1112 1223333444577 68999999999999999998765443211000 000
Q ss_pred ce------------------------EEEEee--CCEEEEEeC-------------------------------------
Q 013717 345 AI------------------------LCLINV--AGLLMSGSA------------------------------------- 361 (437)
Q Consensus 345 ~i------------------------~~~~~~--~~~l~~~~~------------------------------------- 361 (437)
.+ ..++++ ..++++...
T Consensus 370 ~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~ 449 (677)
T 1kb0_A 370 PIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAE 449 (677)
T ss_dssp EEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSS
T ss_pred eeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccc
Confidence 00 023344 345555432
Q ss_pred ------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 362 ------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 362 ------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.|.|..||+.+++ .+.... +..++....+...++ +++.++.||.+++||.++++.
T Consensus 450 ~~~~~~~g~l~A~D~~tG~---~~W~~~-~~~~~~~g~~~~~g~-----~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 450 PPKSKPFGRLLAWDPVAQK---AAWSVE-HVSPWNGGTLTTAGN-----VVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp CCCSCCEEEEEEEETTTTE---EEEEEE-ESSSCCCCEEEETTT-----EEEEECTTSEEEEEETTTCCE
T ss_pred cCCCCCccEEEEEeCCCCc---EEeecC-CCCCCcCcceEeCCC-----EEEEECCCCcEEEEECCCCce
Confidence 2779999999877 343433 333455555666554 678889999999999998875
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.20 E-value=6e-09 Score=101.49 Aligned_cols=284 Identities=14% Similarity=0.093 Sum_probs=163.8
Q ss_pred eCCEEEEEecC-eEEEEeCCCCceeeeeccccCCC----Cc-cc-EEEEEEeCCeEEEEecCCeEEEEeCCCCccccccc
Q 013717 107 HHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS----SS-GS-VKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKT 179 (437)
Q Consensus 107 ~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~----h~-~~-v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 179 (437)
.+..|+.++.+ .|..+|..+++..=......... .. .. -..+.+.++.++.++.|+.|..+|..+++......
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 47777778777 99999998864322222110000 00 00 12345567789999999999999999998655443
Q ss_pred ccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEE------CCCcEEEEECCCcceEEEeeccc-
Q 013717 180 TLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVS------WDKSLKIWRASDLRCLESIKAHE- 252 (437)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~- 252 (437)
....... .......++ +..+.++++. .+|.|..||.++++.+..+....
T Consensus 149 ~~~~~~~--------------------~~~~~~sP~----v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~ 204 (689)
T 1yiq_A 149 TRADHKR--------------------SYTITGAPR----VVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPG 204 (689)
T ss_dssp CCSCTTS--------------------CCBCCSCCE----EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred CcCCCCC--------------------CccccCCcE----EECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCC
Confidence 2100000 000011111 1234555554 37899999999999988775210
Q ss_pred ------------------------------ccEEEEEEecCCe-EEEEeCCCe-------------------EEEecCCC
Q 013717 253 ------------------------------DAVNAVAVSAGGT-VYTGSADRK-------------------IRVWAKPF 282 (437)
Q Consensus 253 ------------------------------~~v~~~~~~~~~~-l~~~~~dg~-------------------v~iwd~~~ 282 (437)
.....++++|++. ++.++.++. |..+|.++
T Consensus 205 ~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T 284 (689)
T 1yiq_A 205 DPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT 284 (689)
T ss_dssp CTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT
T ss_pred CcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC
Confidence 0012567888665 778877764 99999887
Q ss_pred CcccceeeEEeeCc-------cccEEEEEEccCCC---EEEEEeCCCcEEEEECCCCccceEEeeee-------------
Q 013717 283 NEKRHALIATLEKH-------KSAVNALALSDDGT---VLFSGACDRSILVWDREDSANHMVVTGAL------------- 339 (437)
Q Consensus 283 ~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------- 339 (437)
+...+... ...| ..++.......+|+ .++.++.+|.++++|.++++.........
T Consensus 285 G~~~W~~~--~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~ 362 (689)
T 1yiq_A 285 GEYVWHYQ--TTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGR 362 (689)
T ss_dssp CCEEEEEE--SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTE
T ss_pred CceeEeee--cCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCC
Confidence 65433221 1112 12222223333665 78899999999999999987543211000
Q ss_pred -----------cccccce-----------EEEEeeC--CEEEEEeC----------------------------------
Q 013717 340 -----------RGHGKAI-----------LCLINVA--GLLMSGSA---------------------------------- 361 (437)
Q Consensus 340 -----------~~~~~~i-----------~~~~~~~--~~l~~~~~---------------------------------- 361 (437)
......+ ..+++++ .++++...
T Consensus 363 pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 442 (689)
T 1yiq_A 363 PILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEG 442 (689)
T ss_dssp EEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSS
T ss_pred cccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcc
Confidence 0000000 0133333 35554421
Q ss_pred -----------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 362 -----------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 362 -----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
+|.|+.||+.+++ .+.....+. ++..-.+...++ +++.++.||.|+.||.++++.
T Consensus 443 ~~~~~~~~~~~~g~l~A~D~~tG~---~~W~~~~~~-~~~~g~~~tagg-----lvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 443 AEGLLEMAKSWSGKLIAWDPVKQQ---AAWEVPYVT-IFNGGTLSTAGN-----LVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTTE---EEEEEEESS-SCCCCEEEETTT-----EEEEECTTSEEEEEETTTCCE
T ss_pred cccCCCCCCCcceeEEEEECCCCC---eEeEccCCC-CccCccceECCC-----EEEEECCCCcEEEEECCCCcc
Confidence 3779999999887 444444332 333334555543 788899999999999999875
No 221
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.19 E-value=5.1e-09 Score=94.72 Aligned_cols=268 Identities=8% Similarity=-0.017 Sum_probs=161.1
Q ss_pred CeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe----------cCCeEEEEeCCCCcccccccccCcc
Q 013717 117 HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH----------QDCKIRVWQLTPTKHHKLKTTLPTV 184 (437)
Q Consensus 117 d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (437)
+.|.++|..+. +.+..+.. -..+ .+.+++++ ++.+. .++.|.++|..+.+....+..-...
T Consensus 99 ~~VsVID~~t~--~vv~~I~v---G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGSTG--RILGMTDG---GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP 171 (426)
T ss_dssp EEEEEEETTTT--EEEEEEEE---CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECCCC--EEEEEEEC---CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence 48999999995 44555432 1233 89999776 55554 4678999999988755443210000
Q ss_pred ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC--CCcEEEEECCCcceEEEeecccccEEEEEE
Q 013717 185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW--DKSLKIWRASDLRCLESIKAHEDAVNAVAV 260 (437)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 260 (437)
. .........+.+++ ++++++.. ++.|.+.|+.+++.+..+.... . ...
T Consensus 172 ---------------------r--~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~ 224 (426)
T 3c75_H 172 ---------------------R--FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHI 224 (426)
T ss_dssp ---------------------C--CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEE
T ss_pred ---------------------c--cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eee
Confidence 0 00011233567777 77887764 5889999999999988886322 1 233
Q ss_pred ecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccE-EEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee
Q 013717 261 SAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAV-NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG 337 (437)
Q Consensus 261 ~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (437)
.|++. +++.+.||.+.+.+...+.........+.....++ ..+.|.+++..++.....+.|.+.|+...........
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~ 304 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPI 304 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCE
T ss_pred ccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeee
Confidence 44443 67777888888887733321100000111111111 2356789988887778889999999865432110000
Q ss_pred ee----------cccccceEEEEeeCCEEEEEeC----------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717 338 AL----------RGHGKAILCLINVAGLLMSGSA----------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 338 ~~----------~~~~~~i~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
.. .........+..+++.+++... ++.|.++|..+.+ .+.++... ....+|+|+|+
T Consensus 305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---vv~~I~vg-~~P~gia~spD 380 (426)
T 3c75_H 305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---RINKIELG-HEIDSINVSQD 380 (426)
T ss_dssp ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---EEEEEEEE-EEECEEEECCS
T ss_pred eeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe---EEEEEECC-CCcCeEEEccC
Confidence 00 0111122466666665555432 3579999999977 44444321 25789999999
Q ss_pred CCCCceEEEEEec-CCCcEEEEeeccCCCC
Q 013717 398 EGQNGVVSVFSGS-LDGEIRAWQVSVSCPN 426 (437)
Q Consensus 398 ~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~ 426 (437)
+.. +++++. .++.|.++|+.+.+..
T Consensus 381 g~~----~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 381 AEP----LLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp SSC----EEEEEETTTTEEEEEETTTCCEE
T ss_pred CCE----EEEEEcCCCCeEEEEECCCCCEE
Confidence 853 455555 6999999999988754
No 222
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.18 E-value=9.6e-10 Score=97.50 Aligned_cols=256 Identities=14% Similarity=0.126 Sum_probs=159.6
Q ss_pred EEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC-eEEEEecCCeEEEEeCCCCcccccc
Q 013717 102 GCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-KIFTAHQDCKIRVWQLTPTKHHKLK 178 (437)
Q Consensus 102 ~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~ 178 (437)
.+.... +..|+.++.+ .|..|| .+++. .... ......+.++...++ .++.++.+ |..+|. +++.....
T Consensus 23 ~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~--~~~~---~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 23 SSPILAKNGTIYLGSSNKNLYAIN-TDGSV--KWFF---KSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCCEECTTSCEECSSTTTTTEEEC-TTSCE--EESS---CGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGS
T ss_pred cCceEccCCeEEEEcCCCEEEEEC-CCCcE--EEEE---ecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEE
Confidence 344454 6667777777 899999 66533 2222 123445677777644 46666655 888886 44433222
Q ss_pred cccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEE
Q 013717 179 TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAV 258 (437)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 258 (437)
.. .........+..+.++.++.++.|..+|.. ++...........+.++
T Consensus 94 ~~------------------------------~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 142 (330)
T 3hxj_A 94 DT------------------------------KKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATP 142 (330)
T ss_dssp CC-----------------------------------CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred EC------------------------------CCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeee
Confidence 11 011111122236778888889999999988 77777666555566777
Q ss_pred EEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeee
Q 013717 259 AVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA 338 (437)
Q Consensus 259 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 338 (437)
...+++.++.++.++.|..||.. +. ....+......+.++...++|.+.+ ++ +.|..+| .+++.....
T Consensus 143 ~~~~~g~l~vgt~~~~l~~~d~~-g~----~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~--- 210 (330)
T 3hxj_A 143 IVSEDGTIYVGSNDNYLYAINPD-GT----EKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF--- 210 (330)
T ss_dssp EECTTSCEEEECTTSEEEEECTT-SC----EEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE---
T ss_pred EEcCCCEEEEEcCCCEEEEECCC-CC----EeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE---
Confidence 77778889899999999999875 32 3334444455666777777887554 44 7799999 555433222
Q ss_pred ecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717 339 LRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA 417 (437)
Q Consensus 339 ~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i 417 (437)
......+.++..+++ .|..++.++.|..+|.. ++ .+..+......+..+...+++ .|..++.+|.|..
T Consensus 211 -~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~-g~---~~~~~~~~~~~~~~~~~~~~g------~l~v~t~~ggl~~ 279 (330)
T 3hxj_A 211 -YAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD-GT---EKWRFKTGKRIESSPVIGNTD------TIYFGSYDGHLYA 279 (330)
T ss_dssp -CCSSCCCSCCEECTTSCEEEEETTTEEEEECTT-SC---EEEEEECSSCCCSCCEECTTS------CEEEECTTCEEEE
T ss_pred -ccCCcceeceEECCCCeEEEEcCCCeEEEECCC-CC---EeEEeeCCCCccccceEcCCC------eEEEecCCCCEEE
Confidence 223344556666655 77788888889988743 33 334444334444455554444 4777888888888
Q ss_pred Eee
Q 013717 418 WQV 420 (437)
Q Consensus 418 w~~ 420 (437)
+|.
T Consensus 280 ~d~ 282 (330)
T 3hxj_A 280 INP 282 (330)
T ss_dssp ECT
T ss_pred ECC
Confidence 885
No 223
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.16 E-value=7.7e-07 Score=88.77 Aligned_cols=291 Identities=8% Similarity=0.119 Sum_probs=180.4
Q ss_pred ccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccc--cCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCC
Q 013717 97 HKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFN--DNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTP 171 (437)
Q Consensus 97 h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~ 171 (437)
+...|.++... ...|..|+.+ -+.+||..+++......-. ...-....|.++...+++ |..|+.+ -|.+|+..+
T Consensus 213 ~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~ 291 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGT 291 (795)
T ss_dssp -CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTT
T ss_pred CCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCC
Confidence 45678888887 5666667765 8999999876444332210 001124679999988555 7777766 588899876
Q ss_pred CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEee-
Q 013717 172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIK- 249 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~- 249 (437)
++......... ... .-....|.++..++ +.|..|+.++-|..|+..+.+......
T Consensus 292 ~~~~~~~~~~~-~~~----------------------~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~ 348 (795)
T 4a2l_A 292 DSFASYSSNPV-ENG----------------------SLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNI 348 (795)
T ss_dssp TEEEEECCCTT-STT----------------------SCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCC
T ss_pred CeEEEEecCCC-CCC----------------------CCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCC
Confidence 64322111000 000 01346799999988 888899988889999876654332211
Q ss_pred -----cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEe------eCccccEEEEEEccCCCEEEEEeCC
Q 013717 250 -----AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATL------EKHKSAVNALALSDDGTVLFSGACD 318 (437)
Q Consensus 250 -----~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~d 318 (437)
.....|.++...++|.|..|+.++-|..||.....- ...... ......|.++...++|+.|..|+.+
T Consensus 349 ~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~ 426 (795)
T 4a2l_A 349 PYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF--TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA 426 (795)
T ss_dssp TTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE--EEECCC------CCSCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE--EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc
Confidence 124569999999999999999998899998654321 111000 0123578999998888857777777
Q ss_pred CcEEEEECCCCccceEEee-eecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeee----cCCCCCeeEE
Q 013717 319 RSILVWDREDSANHMVVTG-ALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVL----EGHTKPVKSL 392 (437)
Q Consensus 319 g~i~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l 392 (437)
+-|.+||..+++... +.. ........|.++..+.+ .|..|+.+ -|.+||..+++ +..+... .-....|.++
T Consensus 427 ~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i 503 (795)
T 4a2l_A 427 GGLSILHRNSGQVEN-FNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQRS-FTTIEKEKDGTPVVSKQITTL 503 (795)
T ss_dssp TEEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTTE-EEECCBCTTCCBCCCCCEEEE
T ss_pred CceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCCe-EEEccccccccccCCceEEEE
Confidence 779999987754211 110 00012456788877644 55556664 48899987643 2111111 1123578888
Q ss_pred EEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
...+++. |..|+. +-|..|+...+
T Consensus 504 ~~d~~g~------lWigt~-~Gl~~~~~~~~ 527 (795)
T 4a2l_A 504 FRDSHKR------LWIGGE-EGLSVFKQEGL 527 (795)
T ss_dssp EECTTCC------EEEEES-SCEEEEEEETT
T ss_pred EECCCCC------EEEEeC-CceEEEeCCCC
Confidence 8777663 444444 45888887654
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.15 E-value=2.5e-08 Score=87.25 Aligned_cols=220 Identities=12% Similarity=0.097 Sum_probs=130.6
Q ss_pred cccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 142 SGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 142 ~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
........|+++. +++...++.|..|+.. ++. .. +..+...+..+
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~------------------------------~~~~~~~~~gl 91 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DV------------------------------LLDATAFTNGN 91 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EE------------------------------EEESCSCEEEE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EE------------------------------EeCCCCcccee
Confidence 3456678888543 6677778999999874 331 11 12255678899
Q ss_pred EeCC-CeEEEEE-CCCcEEEEECCCcceEEEeec----ccccEEEEEEecCCeEEE-----EeC-------------CCe
Q 013717 219 AVNN-GLIYSVS-WDKSLKIWRASDLRCLESIKA----HEDAVNAVAVSAGGTVYT-----GSA-------------DRK 274 (437)
Q Consensus 219 ~~~~-~~l~~~~-~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~-----~~~-------------dg~ 274 (437)
++++ ..++++. .++.|.+||.. ++....... ....+..+++.++|.+.. |.. .+.
T Consensus 92 ~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~ 170 (305)
T 3dr2_A 92 AVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHS 170 (305)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEE
T ss_pred eECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCe
Confidence 9988 4455555 45789999985 553322211 123467899999999555 332 256
Q ss_pred EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC------CcEEEEECCCCccceEEeeeecccccce--
Q 013717 275 IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD------RSILVWDREDSANHMVVTGALRGHGKAI-- 346 (437)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~i-- 346 (437)
|..||...+.. .. +. .......++|+||++.|+.+... +.|++|++.... ...............
T Consensus 171 v~~~d~~~g~~--~~---~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdg 243 (305)
T 3dr2_A 171 VYRLPPDGSPL--QR---MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDG 243 (305)
T ss_dssp EEEECSSSCCC--EE---EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCS
T ss_pred EEEEcCCCCcE--EE---Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCe
Confidence 77776543321 11 11 33457889999999988877665 689999987543 111110011111222
Q ss_pred EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC
Q 013717 347 LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG 413 (437)
Q Consensus 347 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg 413 (437)
..+..+++ |.++..+| |.+|+.. ++ .+..+..+. .+.+++|.++++ .|+.++.++
T Consensus 244 i~~d~~G~-lwv~~~~g-v~~~~~~-g~---~~~~~~~~~-~~~~~~f~~d~~-----~L~it~~~~ 298 (305)
T 3dr2_A 244 FCVDRGGW-LWSSSGTG-VCVFDSD-GQ---LLGHIPTPG-TASNCTFDQAQQ-----RLFITGGPC 298 (305)
T ss_dssp EEECTTSC-EEECCSSE-EEEECTT-SC---EEEEEECSS-CCCEEEECTTSC-----EEEEEETTE
T ss_pred EEECCCCC-EEEecCCc-EEEECCC-CC---EEEEEECCC-ceeEEEEeCCCC-----EEEEEcCCe
Confidence 33334455 44455554 9999985 33 455555444 588999997664 455555553
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.14 E-value=1e-07 Score=84.15 Aligned_cols=210 Identities=9% Similarity=0.023 Sum_probs=128.3
Q ss_pred eEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCccc
Q 013717 101 IGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHH 175 (437)
Q Consensus 101 V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~ 175 (437)
..+.+|+ +.++++...+ .|.+||.+++..... . ....+.+++++++. ++.++.+ .|.+||..+++..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~------~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-A------LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLT 122 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-E------CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-E------CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEE
Confidence 4566777 3455666566 999999988643322 1 23578999998554 6666644 4999998876532
Q ss_pred ccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEEC-------CCcEEEEECCCcceEEE
Q 013717 176 KLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSW-------DKSLKIWRASDLRCLES 247 (437)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~-------dg~i~iwd~~~~~~~~~ 247 (437)
.... ... ......+.++++++ ..++.++. .+.|..++ +++.. .
T Consensus 123 ~~~~-~~~-------------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~ 173 (326)
T 2ghs_A 123 LHAE-LES-------------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-K 173 (326)
T ss_dssp EEEC-SST-------------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-E
T ss_pred EEee-CCC-------------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-E
Confidence 2111 000 00124578899988 33444442 24566666 45433 3
Q ss_pred eecccccEEEEEEecCCe-E-EEEeCCCeEEEecCC--CC-ccc-ceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcE
Q 013717 248 IKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKP--FN-EKR-HALIATLEKHKSAVNALALSDDGTVLFSGACDRSI 321 (437)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~--~~-~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (437)
+.........++|+|+++ + ++.+.++.|.+||+. .+ ... ...+..+......+..++++++|++.++...++.|
T Consensus 174 ~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v 253 (326)
T 2ghs_A 174 LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV 253 (326)
T ss_dssp EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEE
T ss_pred eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEE
Confidence 333344578999999997 5 444567899999975 22 111 12222333334567889999999887777677889
Q ss_pred EEEECCCCccceEEeeeecccccceEEEEee
Q 013717 322 LVWDREDSANHMVVTGALRGHGKAILCLINV 352 (437)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 352 (437)
.+||.. ++. ...+..+...+.++++.
T Consensus 254 ~~~d~~-g~~----~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 254 DRYDTD-GNH----IARYEVPGKQTTCPAFI 279 (326)
T ss_dssp EEECTT-CCE----EEEEECSCSBEEEEEEE
T ss_pred EEECCC-CCE----EEEEECCCCCcEEEEEe
Confidence 999983 432 22233344567888876
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.07 E-value=1.7e-08 Score=98.94 Aligned_cols=239 Identities=11% Similarity=0.149 Sum_probs=140.3
Q ss_pred CCcccEEEEEEeCCe--EEE-----EecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717 140 SSSGSVKSVTFCDGK--IFT-----AHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG 212 (437)
Q Consensus 140 ~h~~~v~~l~~~~~~--l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (437)
+|...+..++|+|++ |+. |+....|++||+.+++..... +. +.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~--~~---------------------------~~- 175 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP--LK---------------------------DV- 175 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE--EE---------------------------EE-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc--cC---------------------------Cc-
Confidence 466688999999876 442 223357999999988643210 00 00
Q ss_pred CcEEEEEe-CCCeEEEEECCC-------------cEEEEECCCcce----EEEeec-ccccEEEEEEecCCe-EE-EEeC
Q 013717 213 DAVTGLAV-NNGLIYSVSWDK-------------SLKIWRASDLRC----LESIKA-HEDAVNAVAVSAGGT-VY-TGSA 271 (437)
Q Consensus 213 ~~v~~~~~-~~~~l~~~~~dg-------------~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~-l~-~~~~ 271 (437)
....++| +.+.|+.+..+. .|++|++.+... +..... +...+..+.++|||+ |+ +...
T Consensus 176 -k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 254 (693)
T 3iuj_A 176 -KFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAAN 254 (693)
T ss_dssp -ESCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEES
T ss_pred -eeccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEcc
Confidence 0112233 346666666653 499999877642 222223 344578899999998 43 3332
Q ss_pred ---CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CC---CcEEEEECCCCccc-eEEeeeecccc
Q 013717 272 ---DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CD---RSILVWDREDSANH-MVVTGALRGHG 343 (437)
Q Consensus 272 ---dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d---g~i~i~d~~~~~~~-~~~~~~~~~~~ 343 (437)
...|.++|+...... ...+..+....... ++++|..|+..+ .+ +.|..+|+.++... ... +..|.
T Consensus 255 ~~~~~~i~~~d~~~~~~~---~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~ 327 (693)
T 3iuj_A 255 STSGNRLYVKDLSQENAP---LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD---LIPER 327 (693)
T ss_dssp SSSCCEEEEEETTSTTCC---CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---EECCC
T ss_pred CCCCcEEEEEECCCCCCc---eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE---EecCC
Confidence 358999998654322 23344444444444 566666555443 33 67999999876431 111 22233
Q ss_pred cceEEEEeeCCEEEEEeC-CC--cEEEeeCCCCCCeeeeeeec-CCCCCeeEEEEEccCCCCceEEEEEecCC---CcEE
Q 013717 344 KAILCLINVAGLLMSGSA-DR--TVRIWQRGSDGRFGCLAVLE-GHTKPVKSLTAVTEEGQNGVVSVFSGSLD---GEIR 416 (437)
Q Consensus 344 ~~i~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~ 416 (437)
..+..+++.++.|+.... ++ .|++|++..+. ...+. .+.+.+..+.++++++. ++++.+.. +.|+
T Consensus 328 ~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~----~~~l~~p~~~~~~~~~~~~d~~~----l~~~~ss~~tP~~l~ 399 (693)
T 3iuj_A 328 QQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKR----VREVALPGLGSVSGFNGKHDDPA----LYFGFENYAQPPTLY 399 (693)
T ss_dssp SSCEEEEEETTEEEEEEEETTEEEEEEECTTSCE----EEEECCSSSSEEEECCCCTTCSC----EEEEEECSSSCCEEE
T ss_pred CCEEEEEEECCEEEEEEEECCeeEEEEEECCCCe----eEEeecCCCceEEeeecCCCCCE----EEEEecCCCCCCEEE
Confidence 333378888886665554 44 68899987432 23332 24456777777777653 44444332 7899
Q ss_pred EEeeccCC
Q 013717 417 AWQVSVSC 424 (437)
Q Consensus 417 iw~~~~~~ 424 (437)
.||+.+++
T Consensus 400 ~~d~~~g~ 407 (693)
T 3iuj_A 400 RFEPKSGA 407 (693)
T ss_dssp EECTTTCC
T ss_pred EEECCCCe
Confidence 99987664
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.07 E-value=2.3e-08 Score=89.05 Aligned_cols=266 Identities=11% Similarity=0.089 Sum_probs=153.8
Q ss_pred CCeEEEEee--CCEEEEEec--C-eEEEEeCCCCceeeeecc-ccCCCCcccEEEEEEeCCe-EEEEec------CCeEE
Q 013717 99 LPIGCIAVH--HNFLYAASS--H-EINVYDRTGTTWTSINTF-NDNDSSSGSVKSVTFCDGK-IFTAHQ------DCKIR 165 (437)
Q Consensus 99 ~~V~~l~~~--~~~l~s~~~--d-~v~vwd~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~-l~s~~~------dg~i~ 165 (437)
.....++++ |+++++... + .++||.+.++........ .....|...+..++++++. |+.+.. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 678899998 777777542 2 355665544432211111 1113466789999999754 655543 57899
Q ss_pred EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE----CCCcEEEEEC
Q 013717 166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS----WDKSLKIWRA 239 (437)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~----~dg~i~iwd~ 239 (437)
+||+.+++....+..-... ..+...+..+++++ ..++.+. .++.|.+||+
T Consensus 97 ~~d~~tg~~~~~~~~~~~~------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~ 152 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPI------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDL 152 (343)
T ss_dssp EEETTTTEEEEEEECCTTT------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEET
T ss_pred EEECCCCeEEEEEECChhh------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEEC
Confidence 9999887643332210000 01334567888875 4554443 5789999999
Q ss_pred CCcceEEEeecccccEE-EEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC
Q 013717 240 SDLRCLESIKAHEDAVN-AVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC 317 (437)
Q Consensus 240 ~~~~~~~~~~~~~~~v~-~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (437)
.+++....+..|..... ...+.++|. +.+...+|.++.|. ..+..|+|+|||+.|+.+..
T Consensus 153 ~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~------------------~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 153 QTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH------------------LGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp TTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC------------------CCEEEEEECTTSCEEEEEES
T ss_pred CCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee------------------cccceeEeccCCCEEEEEeC
Confidence 98887666644321110 134555776 66677777776662 13567999999998888877
Q ss_pred CC-cEEEEECC---CCccc-eEEee--eecccccce--EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCC
Q 013717 318 DR-SILVWDRE---DSANH-MVVTG--ALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKP 388 (437)
Q Consensus 318 dg-~i~i~d~~---~~~~~-~~~~~--~~~~~~~~i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 388 (437)
++ .++.++.. .+... ..... ...++.... .++..++.++++...++.|.+||..+++ ...+... .+...
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~-~~~~~ 292 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTD-EKLSW 292 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEEC-GGGSC
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEEC-Cceec
Confidence 66 55555432 11000 00000 001122222 4444556688888888999999984443 2222221 13456
Q ss_pred eeEEEEEccCCCCceEEEEEecCCC
Q 013717 389 VKSLTAVTEEGQNGVVSVFSGSLDG 413 (437)
Q Consensus 389 v~~l~~~~~~~~~~~~~l~s~~~dg 413 (437)
..++++.+++. ++++.+..+
T Consensus 293 p~~va~~~~g~-----l~v~~~~~~ 312 (343)
T 2qe8_A 293 TDSFNFGSDGY-----LYFDCNQLH 312 (343)
T ss_dssp EEEEEECTTSC-----EEEEECCGG
T ss_pred CCeeEECCCCc-----EEEEeCccc
Confidence 88999998753 566655433
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.07 E-value=5.9e-11 Score=106.89 Aligned_cols=179 Identities=16% Similarity=0.097 Sum_probs=100.5
Q ss_pred EeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-CC-CeEEE
Q 013717 150 FCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-NN-GLIYS 227 (437)
Q Consensus 150 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~-~~l~~ 227 (437)
..++.+++++.||.|+.||..+++....... ..+.+..+ .. ..+++
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--------------------------------~~~~s~p~~~~g~~~v~ 54 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--------------------------------DPVLQVPTHVEEPAFLP 54 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------CCSCCCC-----CCEEE
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------CCceecceEcCCCEEEE
Confidence 3456699999999999999999876544331 11111111 12 46666
Q ss_pred EECCCcEEEEECCCcceEEEeecccc-cEE-EEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEE
Q 013717 228 VSWDKSLKIWRASDLRCLESIKAHED-AVN-AVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305 (437)
Q Consensus 228 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~-~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (437)
++.||.|+.||.++++.+..+..+.. .+. +..+..++.+++++.++.|+.||..++...+ .+..+. ...+
T Consensus 55 ~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w----~~~~~~----~~~~ 126 (369)
T 2hz6_A 55 DPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQ----TLSSAF----ADSL 126 (369)
T ss_dssp CTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------------
T ss_pred eCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEE----EecCCC----cccc
Confidence 78999999999999988766643211 111 1111234558888899999999987665332 232222 2345
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC-----CEEEEEeCCCcEEEeeCCCCC
Q 013717 306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA-----GLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~ 374 (437)
+|++..+++++.|+.|+.||.++++..+..... .. ......+ +.+++++.||.|+.||..+++
T Consensus 127 ~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~--~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 127 SPSTSLLYLGRTEYTITMYDTKTRELRWNATYF--DY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp ------EEEEEEEEEEECCCSSSSSCCCEEEEE--EE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred cccCCEEEEEecCCEEEEEECCCCCEEEeEecc--cc----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 678889999999999999999998866654321 11 1122222 567788999999999999877
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.06 E-value=1.6e-08 Score=99.00 Aligned_cols=201 Identities=13% Similarity=0.116 Sum_probs=127.4
Q ss_pred CCCcEEEEEeCC--CeEEEEE-----CCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCC---------
Q 013717 211 HGDAVTGLAVNN--GLIYSVS-----WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADR--------- 273 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg--------- 273 (437)
+...+..++|+| ++|+.+. ....|++||+.+++.+.... .......++|+ |++ |+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 555788889998 5666432 23579999999998655321 11113567899 998 88887774
Q ss_pred ----eEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEEeC----CCcEEEEECCCCccceEEeeeeccccc
Q 013717 274 ----KIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSGAC----DRSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 274 ----~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
.|.+|++.+.......+..... +......+.|+|||++|+.... ++.|+++|+.++....... ..+..
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l---~~~~~ 281 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV---QGDLD 281 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE---ECSSS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE---eCCCC
Confidence 3999998765544444444443 4456788999999998865433 3589999998764222222 12222
Q ss_pred ceE-EEEeeCCEEE-EEeCC---CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC--cEEE
Q 013717 345 AIL-CLINVAGLLM-SGSAD---RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG--EIRA 417 (437)
Q Consensus 345 ~i~-~~~~~~~~l~-~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~i 417 (437)
... .+...++.|+ ....+ +.|..+|+.++.. .....+..|...+. .|+++++. ++++...|| .|++
T Consensus 282 ~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~g~~----lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 282 ADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSGSGY----LFAEYMVDATARVEQ 354 (693)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEETTE----EEEEEEETTEEEEEE
T ss_pred ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEECCE----EEEEEEECCeeEEEE
Confidence 222 2556677444 44333 5789999987652 12345556666665 78888763 555555665 6888
Q ss_pred EeeccC
Q 013717 418 WQVSVS 423 (437)
Q Consensus 418 w~~~~~ 423 (437)
|+++.+
T Consensus 355 ~d~~g~ 360 (693)
T 3iuj_A 355 FDYEGK 360 (693)
T ss_dssp ECTTSC
T ss_pred EECCCC
Confidence 887644
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.06 E-value=1.2e-07 Score=83.03 Aligned_cols=222 Identities=10% Similarity=0.035 Sum_probs=131.0
Q ss_pred CccCCeEEEEee--CC-EEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEec-CCeEEEEeC
Q 013717 96 GHKLPIGCIAVH--HN-FLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ-DCKIRVWQL 169 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~-~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~-dg~i~iwd~ 169 (437)
.........+|+ ++ +++++..+ .|..|+... ...... .+...+..+++++++ ++.+.. ++.|.+|+.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~~~~~~------~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-TVDVLL------DATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-CEEEEE------ESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-CEEEEe------CCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 455567788888 66 66676667 999999843 332222 245678999999665 666654 478999997
Q ss_pred CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEE----EEC-------------
Q 013717 170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYS----VSW------------- 230 (437)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~----~~~------------- 230 (437)
+ ++......... ......++++++++ +++++ |..
T Consensus 115 ~-g~~~~~~~~~~--------------------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 115 D-GQAHLLVGRYA--------------------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp T-SCEEEEECEET--------------------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred C-CCEEEEEeccC--------------------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence 6 43221111000 00123456677877 44443 221
Q ss_pred CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCC------CeEEEecCCCCcccceeeEEe-eCccccEEE
Q 013717 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD------RKIRVWAKPFNEKRHALIATL-EKHKSAVNA 302 (437)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d------g~v~iwd~~~~~~~~~~~~~~-~~~~~~i~~ 302 (437)
.+.|..+|..+++..... .......++|+|+++ |+++... +.|.+|++.... ......+ ......+..
T Consensus 168 ~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdg 243 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDG 243 (305)
T ss_dssp CEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCS
T ss_pred CCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCe
Confidence 256788887666654433 344578899999998 7666654 789999876432 1111111 112344567
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEe--eCCEEEEEeCCC
Q 013717 303 LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGSADR 363 (437)
Q Consensus 303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~dg 363 (437)
++++++|++ .++..+| |.+|+.. ++... .+.... .+..+.+ +++.|+.++.++
T Consensus 244 i~~d~~G~l-wv~~~~g-v~~~~~~-g~~~~----~~~~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 244 FCVDRGGWL-WSSSGTG-VCVFDSD-GQLLG----HIPTPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEECTTSCE-EECCSSE-EEEECTT-SCEEE----EEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred EEECCCCCE-EEecCCc-EEEECCC-CCEEE----EEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 899999984 4444555 9999984 33222 222222 3555555 344677776654
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.03 E-value=4.5e-11 Score=107.65 Aligned_cols=186 Identities=15% Similarity=0.078 Sum_probs=100.0
Q ss_pred eCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc-
Q 013717 220 VNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK- 297 (437)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~- 297 (437)
+..+.+++++.||.|+.||..+++.+..+.. +.+.+..+..++. +++++.||.|+.||..++...+ .+..+.
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w----~~~~~~~ 80 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT----KLPFTIP 80 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE----ECSCCHH
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee----eeeccCc
Confidence 3458899999999999999999999988875 4555555566776 7777899999999986554322 222111
Q ss_pred ccEE-EEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCe
Q 013717 298 SAVN-ALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRF 376 (437)
Q Consensus 298 ~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 376 (437)
..+. +..+. ++..+++++.|+.|+.||.++++....+.. +. ...+.+.++.+++++.|+.|+.||.++++.
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~----~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~- 152 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS----AF--ADSLSPSTSLLYLGRTEYTITMYDTKTREL- 152 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSC-
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC----CC--cccccccCCEEEEEecCCEEEEEECCCCCE-
Confidence 1110 00111 345778888899999999999876554322 21 112233667888999999999999998772
Q ss_pred eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
+..+..+. ....++.++... ...++.++.||.|+.||..+++.
T Consensus 153 --~W~~~~~~--~~~~~~~~~~~~--~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 153 --RWNATYFD--YAASLPEDDVDY--KMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp --CCEEEEEE--ECCBCCCCCTTC--CCCEEEEETSCEEEEECTTTCCE
T ss_pred --EEeEeccc--ccCccccCCccc--cceEEEECCCCEEEEEECCCCcE
Confidence 22222110 111222222100 01467788899999999987764
No 232
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.99 E-value=4e-06 Score=83.57 Aligned_cols=280 Identities=11% Similarity=0.145 Sum_probs=176.0
Q ss_pred eEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC-CeEEEEecCCeEEEEeCCCCccccc
Q 013717 101 IGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD-GKIFTAHQDCKIRVWQLTPTKHHKL 177 (437)
Q Consensus 101 V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~ 177 (437)
|.++... ...|..|..+ .|..||..+++...... ......|.++...+ +.+..++.++-|..||..+++....
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~----~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIP----ILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC--------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecC----CCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEe
Confidence 8888887 5666667776 89999988764443321 12356788888874 4577777665688999876543221
Q ss_pred ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEee-------
Q 013717 178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIK------- 249 (437)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~------- 249 (437)
..... ... .-....|.++..++ +.+..|+.+ -|.+||..+++......
T Consensus 251 ~~~~~-~~~----------------------~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~ 306 (795)
T 4a2l_A 251 LHSPS-NPK----------------------SISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGS 306 (795)
T ss_dssp CCCTT-CTT----------------------SCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTS
T ss_pred ecCCC-Ccc----------------------ccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCC
Confidence 11000 000 01345799998887 778888876 58999987765443321
Q ss_pred cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEee----CccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717 250 AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLE----KHKSAVNALALSDDGTVLFSGACDRSILVWD 325 (437)
Q Consensus 250 ~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (437)
.....|.++...++|.+..|+.++-|..|+..... ........ .....|.++...++|+ |..|+.++-|..||
T Consensus 307 l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~ 383 (795)
T 4a2l_A 307 LSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYN 383 (795)
T ss_dssp CSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEEC
T ss_pred CCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEc
Confidence 12357999999999999999998889999754321 11111100 1245699999998886 55577777799999
Q ss_pred CCCCccceEEeeee-----cccccceEEEEeeCC-E-EEEEeCCCcEEEeeCCCCCCeeeeeeec-----CCCCCeeEEE
Q 013717 326 REDSANHMVVTGAL-----RGHGKAILCLINVAG-L-LMSGSADRTVRIWQRGSDGRFGCLAVLE-----GHTKPVKSLT 393 (437)
Q Consensus 326 ~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~l~ 393 (437)
..++.... +.... .-....|.++..+.+ . |..|+.++-|.+||..+++ +..+. .....|.++.
T Consensus 384 ~~~~~~~~-~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~----~~~~~~~~~~l~~~~v~~i~ 458 (795)
T 4a2l_A 384 PITQRFTS-YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ----VENFNQRNSQLVNENVYAIL 458 (795)
T ss_dssp TTTCCEEE-ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC----EEEECTTTSCCSCSCEEEEE
T ss_pred CCCCcEEE-EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc----EEEeecCCCCcCCCeeEEEE
Confidence 87653211 11100 012356788877643 4 8889887889999988755 22221 2345788888
Q ss_pred EEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 394 AVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 394 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
..+++. |..|+.+ -|.+|+..++
T Consensus 459 ~d~~g~------lwigt~~-Gl~~~~~~~~ 481 (795)
T 4a2l_A 459 PDGEGN------LWLGTLS-ALVRFNPEQR 481 (795)
T ss_dssp ECSSSC------EEEEESS-CEEEEETTTT
T ss_pred ECCCCC------EEEEecC-ceeEEeCCCC
Confidence 776652 4444444 5788886654
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.98 E-value=2e-06 Score=73.43 Aligned_cols=249 Identities=10% Similarity=0.029 Sum_probs=145.5
Q ss_pred CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC--eE-EEEecCCeEEEEeCCCCcccccccccCcc
Q 013717 108 HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG--KI-FTAHQDCKIRVWQLTPTKHHKLKTTLPTV 184 (437)
Q Consensus 108 ~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (437)
|.+|+.+..+.|+.++++...................+..++++++ .| ++-..++.|..++.+........
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~------ 74 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII------ 74 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE------
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE------
Confidence 3456666655889999887432211000000112346789999853 34 44456789999998754321111
Q ss_pred ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeecccccEEEEEEe
Q 013717 185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKAHEDAVNAVAVS 261 (437)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 261 (437)
.........+++++ +.++.+. ..+.|.++++..................++++
T Consensus 75 ------------------------~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd 130 (267)
T 1npe_A 75 ------------------------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTD 130 (267)
T ss_dssp ------------------------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred ------------------------ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEe
Confidence 01123567888876 5555554 46789999986543222222222467899999
Q ss_pred cC-CeEEEEeC---CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEEe
Q 013717 262 AG-GTVYTGSA---DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVVT 336 (437)
Q Consensus 262 ~~-~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 336 (437)
|+ +.+..+.. .+.|..+++.... ...+ ..........+++++++..|+.+. ..+.|.++|+..... ..+.
T Consensus 131 ~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~ 205 (267)
T 1npe_A 131 PVRGNLYWTDWNRDNPKIETSHMDGTN--RRIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVL 205 (267)
T ss_dssp TTTTEEEEEECCSSSCEEEEEETTSCC--CEEE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEE
T ss_pred eCCCEEEEEECCCCCcEEEEEecCCCC--cEEE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-EEEe
Confidence 95 55555443 4688888775322 1111 112335678999999877665554 567899999875321 1111
Q ss_pred eeecccccceEEEEeeCCEEEEEe-CCCcEEEeeCCCCCCeeeeeeecCCC-CCeeEEEEEccC
Q 013717 337 GALRGHGKAILCLINVAGLLMSGS-ADRTVRIWQRGSDGRFGCLAVLEGHT-KPVKSLTAVTEE 398 (437)
Q Consensus 337 ~~~~~~~~~i~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~ 398 (437)
.+ ......++.+++.|+.+. ..+.|.++|..+++ .+..+.... .....|++.|++
T Consensus 206 ---~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~---~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 206 ---EG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISK---EMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp ---EC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTE---EEEEECCSSCCCCCCEEEECSC
T ss_pred ---cC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCC---ceEEEccccccccceeeecCcc
Confidence 11 122345666667555555 56899999998766 455554332 246778888875
No 234
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.95 E-value=6.2e-07 Score=81.18 Aligned_cols=260 Identities=15% Similarity=0.090 Sum_probs=157.7
Q ss_pred ceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEe----------cC-eEEEEeCCCCceeeeeccccC-CC--
Q 013717 78 ETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAAS----------SH-EINVYDRTGTTWTSINTFNDN-DS-- 140 (437)
Q Consensus 78 g~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~----------~d-~v~vwd~~~~~~~~~~~~~~~-~~-- 140 (437)
+.|.+.|..........- |. .+ .++++ +++|+.+. .+ .|.++|..+.+ .+..+... ..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~~r~ 173 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PIADIELPDAPRF 173 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCC
T ss_pred CeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EEEEEECCCcccc
Confidence 789999987755444443 54 34 78888 77777775 34 89999999953 33333210 00
Q ss_pred -CcccEEEEEEeCCe--EEEEec--CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717 141 -SSGSVKSVTFCDGK--IFTAHQ--DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV 215 (437)
Q Consensus 141 -h~~~v~~l~~~~~~--l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (437)
.......+.+++++ ++.+.. ++.|.+.|+.+.+....+.. .. .
T Consensus 174 ~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v-------------------------------~g-~ 221 (426)
T 3c75_H 174 LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV-------------------------------PD-C 221 (426)
T ss_dssp CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-------------------------------CS-E
T ss_pred ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc-------------------------------CC-c
Confidence 12334578898765 665553 68899999998875544321 01 1
Q ss_pred EEEEe-CCCeEEEEECCCcEEEEECCCcceEEE----eecccccE-EEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717 216 TGLAV-NNGLIYSVSWDKSLKIWRASDLRCLES----IKAHEDAV-NAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 216 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v-~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~ 288 (437)
..+.. ....+++.+.||.+.+.+..+++.... +.....++ ..+.+.+++. ++.....+.|.+.|+......
T Consensus 222 ~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~-- 299 (426)
T 3c75_H 222 YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT-- 299 (426)
T ss_dssp EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE--
T ss_pred eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE--
Confidence 11111 125667778899988888866655532 11111111 2346788877 777778899999988543211
Q ss_pred eeEEeeC----------ccccEEEEEEccCCCEEEEEeC----------CCcEEEEECCCCccceEEeeeecccccceEE
Q 013717 289 LIATLEK----------HKSAVNALALSDDGTVLFSGAC----------DRSILVWDREDSANHMVVTGALRGHGKAILC 348 (437)
Q Consensus 289 ~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 348 (437)
.+..+.. .......++++|+++++++... ++.|.++|..+.+....+. .+....-..
T Consensus 300 v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~---vg~~P~gia 376 (426)
T 3c75_H 300 FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE---LGHEIDSIN 376 (426)
T ss_dssp ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---EEEEECEEE
T ss_pred EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE---CCCCcCeEE
Confidence 1111110 0111223689999988777643 4579999998876443332 122222344
Q ss_pred EEeeCC-EEEEEe-CCCcEEEeeCCCCCCeeeeeee
Q 013717 349 LINVAG-LLMSGS-ADRTVRIWQRGSDGRFGCLAVL 382 (437)
Q Consensus 349 ~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 382 (437)
+..+++ ++++.. .++.|.++|..+.+ .+.++
T Consensus 377 ~spDg~~~lyv~n~~s~~VsVID~~t~k---vv~tI 409 (426)
T 3c75_H 377 VSQDAEPLLYALSAGTQTLHIYDAATGE---ELRSV 409 (426)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTTCC---EEEEE
T ss_pred EccCCCEEEEEEcCCCCeEEEEECCCCC---EEEEe
Confidence 555566 777777 58999999999977 56564
No 235
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=4.9e-06 Score=82.78 Aligned_cols=295 Identities=11% Similarity=0.102 Sum_probs=171.5
Q ss_pred CCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeecccc--CCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcc
Q 013717 99 LPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFND--NDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKH 174 (437)
Q Consensus 99 ~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~ 174 (437)
..|.++... ...|..|+.+-+.+||..++.......... .......|.+|....++ |..|+..+-|.++|..+.+.
T Consensus 211 ~~i~~i~~d~~g~lwigt~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~ 290 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQF 290 (781)
T ss_dssp SSEEEEEECTTCCEEEEETTEEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC--
T ss_pred CceeEEEEcCCCCEEEEeCCcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCee
Confidence 568898887 444555555588899988754443321100 01134679999987554 88888756788899876543
Q ss_pred cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEee----
Q 013717 175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIK---- 249 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---- 249 (437)
....... +..+... .....-....|.++..+. +.|..|+.++-|..++..+........
T Consensus 291 ~~~~~~~------f~~~~~~----------~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~ 354 (781)
T 3v9f_A 291 LLPEQIR------FEFIREG----------DNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQ 354 (781)
T ss_dssp -------------CEEECBC----------SSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----C
T ss_pred eeeeccc------cccccCC----------CCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccc
Confidence 2211100 0000000 000001456789998887 788889988889999987654332211
Q ss_pred -----cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeE-EeeCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 013717 250 -----AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIA-TLEKHKSAVNALALSDDGTVLFSGACDRSILV 323 (437)
Q Consensus 250 -----~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (437)
.....|.++...++|.|..|+.++-|..||...... .... ........|.++...++|++. .|+.++-|..
T Consensus 355 ~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~ 431 (781)
T 3v9f_A 355 MNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA--IYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISY 431 (781)
T ss_dssp CCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE--ECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEE
T ss_pred cccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE--EEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEE
Confidence 123569999998888899999877888997643211 1110 001234678999988888654 4666667999
Q ss_pred EECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeec---CCCCCeeEEEEEccCC
Q 013717 324 WDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLE---GHTKPVKSLTAVTEEG 399 (437)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~ 399 (437)
+|..+++.. ...........|.++..+.+ .|..|+. +-|..||..+++ +....... .....|.++...+++
T Consensus 432 ~~~~~~~~~--~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g- 506 (781)
T 3v9f_A 432 YNTRLKKFQ--IIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKK-VIHHYDTSNSQLLENFVRSIAQDSEG- 506 (781)
T ss_dssp ECSSSCEEE--ECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSS-CCEEECTTTSSCSCSCEEEEEECTTC-
T ss_pred EcCCCCcEE--EeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCe-EEecccCcccccccceeEEEEEcCCC-
Confidence 998665311 11000113456788887754 6666777 458899987654 11221111 113578888877766
Q ss_pred CCceEEEEEecCCCcEEEEeecc
Q 013717 400 QNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 400 ~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
.|..|+.++-|..|+.+.
T Consensus 507 -----~lWigt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 507 -----RFWIGTFGGGVGIYTPDM 524 (781)
T ss_dssp -----CEEEEESSSCEEEECTTC
T ss_pred -----CEEEEEcCCCEEEEeCCC
Confidence 355555544466677554
No 236
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=4e-06 Score=81.45 Aligned_cols=303 Identities=11% Similarity=0.075 Sum_probs=163.8
Q ss_pred ccccCCCceeEEecCCCcceeeeecCccC----------Ce-EEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccC
Q 013717 71 LQKLSPDETINFSSASHLCINSVQLGHKL----------PI-GCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDN 138 (437)
Q Consensus 71 ~~s~s~dg~i~~~~~~~~~~~~~~~~h~~----------~V-~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~ 138 (437)
+...+.++.+..+|......+-..-.... .+ ..+++.+..++.++.+ .|..+|..+++..-.......
T Consensus 69 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~ 148 (668)
T 1kv9_A 69 IYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP 148 (668)
T ss_dssp EEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCT
T ss_pred EEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCC
Confidence 33345567777777654333322211110 11 2344567788888888 999999998743322222100
Q ss_pred CCCcccEE-EEEEeCCeEEEEec------CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEee--c-cceee
Q 013717 139 DSSSGSVK-SVTFCDGKIFTAHQ------DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRR--H-KKKLW 208 (437)
Q Consensus 139 ~~h~~~v~-~l~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~ 208 (437)
.....+. .-.+.++.++.+.. +|.|..+|..+++........+....... ....+.... . ....+
T Consensus 149 -~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~----~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 149 -AKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPY----EHPELREAAKTWQGDQYW 223 (668)
T ss_dssp -TSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC----SSHHHHHHHTTCCSSCHH
T ss_pred -CCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccc----cccccccccccCCcccee
Confidence 0001111 11223566666543 58999999999987665543221100000 000000000 0 00000
Q ss_pred --ecCCCcEEEEEeCC--CeEEEEECCC-------------------cEEEEECCCcceEEEeec--cc-------ccEE
Q 013717 209 --IEHGDAVTGLAVNN--GLIYSVSWDK-------------------SLKIWRASDLRCLESIKA--HE-------DAVN 256 (437)
Q Consensus 209 --~~~~~~v~~~~~~~--~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--~~-------~~v~ 256 (437)
.+.......+++++ +.++.+..++ .|..+|.++++.+..++. |. .+..
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 01112222456665 7777777665 499999999999888763 21 2233
Q ss_pred EEEEecCCe----EEEEeCCCeEEEecCCCCcccceee-------EEeeC-ccccE------------------------
Q 013717 257 AVAVSAGGT----VYTGSADRKIRVWAKPFNEKRHALI-------ATLEK-HKSAV------------------------ 300 (437)
Q Consensus 257 ~~~~~~~~~----l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~~-~~~~i------------------------ 300 (437)
...+..+|+ ++.++.+|.+.++|..+++...... ..+.. ...++
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w 383 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW 383 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCC
Confidence 333334664 8888999999999887654221100 00000 00000
Q ss_pred EEEEEccCCCEEEEE------------------------------------eCCCcEEEEECCCCccceEEeeeeccccc
Q 013717 301 NALALSDDGTVLFSG------------------------------------ACDRSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 301 ~~~~~~~~~~~l~~~------------------------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
..++++|+..+++.. ..+|.|+.||+.+++......... ..
T Consensus 384 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~---~~ 460 (668)
T 1kv9_A 384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT---HW 460 (668)
T ss_dssp SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS---SC
T ss_pred CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC---CC
Confidence 126777776665542 134889999999988665543211 11
Q ss_pred ceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC
Q 013717 345 AILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG 384 (437)
Q Consensus 345 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 384 (437)
.-..+...+.++++++.||.++.||.++++ .+..+..
T Consensus 461 ~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~---~l~~~~~ 497 (668)
T 1kv9_A 461 NGGTLSTAGNLVFQGTAAGQMHAYSADKGE---ALWQFEA 497 (668)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCC---EEEEEEC
T ss_pred cCceeEeCCCEEEEECCcccchhhhhhcCh---hheEecC
Confidence 113455567899999999999999999988 4555443
No 237
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=1.9e-06 Score=85.78 Aligned_cols=288 Identities=11% Similarity=0.089 Sum_probs=174.1
Q ss_pred cCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeec-------c--ccCCCCcccEEEEEEeCCe-EEEEecCCeEE
Q 013717 98 KLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINT-------F--NDNDSSSGSVKSVTFCDGK-IFTAHQDCKIR 165 (437)
Q Consensus 98 ~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~-------~--~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~ 165 (437)
...|.++... ...|..|+.. -|.++|..++....... . ....-....|.+|....++ |..|+.++-|.
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~ 336 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGIN 336 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEE
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEE
Confidence 3568999887 6677778875 88999988754332221 0 0011245679999988655 88898888899
Q ss_pred EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcce
Q 013717 166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRC 244 (437)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 244 (437)
.++............ +... . . ..-....|.++..++ ..|..|+.++-|..||..+++.
T Consensus 337 ~~~~~~~~~~~~~~~-~~~~--------~----------~--~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~ 395 (781)
T 3v9f_A 337 FISNAPPTFHTWSYS-PTQM--------N----------E--SSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA 395 (781)
T ss_dssp EECSSCCSCEEEC-----CC--------C----------S--SCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE
T ss_pred EeCCCCCcceeeccC-cccc--------c----------c--CCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE
Confidence 998875532211100 0000 0 0 001345689999887 7888888777899999876533
Q ss_pred EEEe---ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEee---CccccEEEEEEccCCCEEEEEeCC
Q 013717 245 LESI---KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLE---KHKSAVNALALSDDGTVLFSGACD 318 (437)
Q Consensus 245 ~~~~---~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d 318 (437)
.... ......|.++...+++.|.+|+.++-|..+|..+.. ...+. .....|.++...++|+ |..|+.
T Consensus 396 ~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~- 468 (781)
T 3v9f_A 396 IYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-----FQIIELEKNELLDVRVFYEDKNKK-IWIGTH- 468 (781)
T ss_dssp ECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE-----EEECCSTTTCCCCEEEEEECTTSE-EEEEET-
T ss_pred EEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc-----EEEeccCCCCCCeEEEEEECCCCC-EEEEEC-
Confidence 2211 123467999998888888889988889999765332 22222 1346789999888886 444555
Q ss_pred CcEEEEECCCCccceEEeee-ecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecC----CCCCeeEE
Q 013717 319 RSILVWDREDSANHMVVTGA-LRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEG----HTKPVKSL 392 (437)
Q Consensus 319 g~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~l 392 (437)
+-|..||..+++........ .......|.++..+.+ .|..|+.++-|..||..+++ +..+.. ....|.++
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~----~~~~~~~~~l~~~~i~~i 544 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL----VRKFNQYEGFCSNTINQI 544 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE----EEEECTTTTCSCSCEEEE
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe----EEEccCCCCCCCCeeEEE
Confidence 45899998765432211100 0011356778877654 66667765558888876543 222221 23468888
Q ss_pred EEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
...+++. |..++.+|.|..||..++
T Consensus 545 ~~d~~g~------lWi~T~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 545 YRSSKGQ------MWLATGEGLVCFPSARNF 569 (781)
T ss_dssp EECTTSC------EEEEETTEEEEESCTTTC
T ss_pred EECCCCC------EEEEECCCceEEECCCCC
Confidence 7777663 444555665577776544
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.91 E-value=1.6e-06 Score=72.89 Aligned_cols=197 Identities=9% Similarity=0.017 Sum_probs=131.7
Q ss_pred cEEEEEeCC-CeEEEEEC---CCcEEEEECCCcceEEEeecc-cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717 214 AVTGLAVNN-GLIYSVSW---DKSLKIWRASDLRCLESIKAH-EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 214 ~v~~~~~~~-~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
....+.+++ +.|+.++. ++.|+++|+.+++.+..+... ......+++.. ++ .++.-.++.+.++|..+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~---- 96 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTL---- 96 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTT----
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCC----
Confidence 467899998 77776653 589999999999999887622 22334566653 35 555567899999987644
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccc-cceEEEEeeCCEEEEEe-CCCcE
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHG-KAILCLINVAGLLMSGS-ADRTV 365 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~l~~~~-~dg~i 365 (437)
+.+.++...... ...+++||+.++++..++.|.++|..+.+....+.-...+.. .....+.+.+..+++.. .++.|
T Consensus 97 ~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 97 SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEE
T ss_pred cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeE
Confidence 345555422111 234566888888877889999999988664433322111111 12445555555454444 57899
Q ss_pred EEeeCCCCCCeeeeeeecCC-------------CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 366 RIWQRGSDGRFGCLAVLEGH-------------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 366 ~iwd~~~~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
.+.|..+++ .+..+.-. ....+.|++.|+++ ++++++...+.|.+-++....
T Consensus 175 ~vID~~tg~---V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~----~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 175 ARISAKDGT---LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK----RIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTTCC---EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT----EEEEEETTCSEEEEEEEEECC
T ss_pred EEEECCCCc---EEEEEECCCcccccccccccccCceEEEEEcCCCC----EEEEECCCCCeEEEEEEeccc
Confidence 999999987 44443321 13568999999886 489999999999999998754
No 239
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.90 E-value=1.8e-07 Score=83.21 Aligned_cols=224 Identities=9% Similarity=-0.007 Sum_probs=134.0
Q ss_pred EEEEecCC----eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE
Q 013717 155 IFTAHQDC----KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV 228 (437)
Q Consensus 155 l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~ 228 (437)
+++...++ +|.++|..+++....+. .+. .+ .+.++| ++++++
T Consensus 35 yV~~~~~~~~~d~vsvID~~t~~v~~~i~-----------------------------vG~-~P--~i~~spDg~~lyVa 82 (368)
T 1mda_H 35 HITLPAYFAGTTENWVSCAGCGVTLGHSL-----------------------------GAF-LS--LAVAGHSGSDFALA 82 (368)
T ss_dssp EEEECTTTCSSEEEEEEETTTTEEEEEEE-----------------------------ECT-TC--EEEECTTSSCEEEE
T ss_pred EEECCccCCccceEEEEECCCCeEEEEEe-----------------------------CCC-CC--ceEECCCCCEEEEE
Confidence 44544455 88899999887654443 122 24 688888 677776
Q ss_pred E----------CCCcEEEEECCCcceEEEeecc-------cccEEEEEEecCCe-EEEEeC--CCeEEE--ecCCCCccc
Q 013717 229 S----------WDKSLKIWRASDLRCLESIKAH-------EDAVNAVAVSAGGT-VYTGSA--DRKIRV--WAKPFNEKR 286 (437)
Q Consensus 229 ~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~-l~~~~~--dg~v~i--wd~~~~~~~ 286 (437)
. .++.|.+||+.+++.+.++... ......++++|||+ ++++.. +..|.+ +|..+ .
T Consensus 83 n~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v-- 159 (368)
T 1mda_H 83 STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-D-- 159 (368)
T ss_dssp EEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-E--
T ss_pred cccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-c--
Confidence 5 3788999999999999998643 12356789999998 776654 467888 98754 1
Q ss_pred ceeeEE------eeC---------ccccEEEEEE--------------------------ccCCCEEEEEeCCCcEEEEE
Q 013717 287 HALIAT------LEK---------HKSAVNALAL--------------------------SDDGTVLFSGACDRSILVWD 325 (437)
Q Consensus 287 ~~~~~~------~~~---------~~~~i~~~~~--------------------------~~~~~~l~~~~~dg~i~i~d 325 (437)
..+.. ... ..+.+..+.. .+++..++..+. +.|.+.|
T Consensus 160 -~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD 237 (368)
T 1mda_H 160 -QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGD 237 (368)
T ss_dssp -EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEE
T ss_pred -eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEE
Confidence 01100 000 0000000000 233333333344 6677777
Q ss_pred CCCCccceEEeeee------------cccccceEEEEeeCCEEEEEeC---------CCcEEEeeCCCCCCeeeeeeecC
Q 013717 326 REDSANHMVVTGAL------------RGHGKAILCLINVAGLLMSGSA---------DRTVRIWQRGSDGRFGCLAVLEG 384 (437)
Q Consensus 326 ~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~ 384 (437)
+...... +...+ .........+..+++.++++.. ++.+.++|+.+.+ .+..+..
T Consensus 238 ~~~~~~~--v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~---vv~~i~v 312 (368)
T 1mda_H 238 IPAAGAT--MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---TSGPISN 312 (368)
T ss_dssp CCSSCCE--EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---EEECCEE
T ss_pred CCCCcce--EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe---EEEEEEC
Confidence 7543211 11111 0111122456666666655432 2356699999877 4555443
Q ss_pred CCCCeeEEEEEccCCCCceEEEEEec-CCCcEEEEeeccCCC
Q 013717 385 HTKPVKSLTAVTEEGQNGVVSVFSGS-LDGEIRAWQVSVSCP 425 (437)
Q Consensus 385 h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~ 425 (437)
.. ...+|+|++++.. ++++.. .++.|.++|+.+.+.
T Consensus 313 g~-~p~gi~~s~Dg~~----l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 313 GH-DSDAIIAAQDGAS----DNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EE-EECEEEECCSSSC----EEEEEETTTTEEEEEESSSCEE
T ss_pred CC-CcceEEECCCCCE----EEEEccCCCCeEEEEECCCCcE
Confidence 22 5889999999864 677777 699999999998764
No 240
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.89 E-value=8.8e-06 Score=77.37 Aligned_cols=268 Identities=10% Similarity=0.019 Sum_probs=144.4
Q ss_pred EEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEE-EEEEeCCeEEEEec------CCeEEEEeCCCCccc
Q 013717 104 IAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVK-SVTFCDGKIFTAHQ------DCKIRVWQLTPTKHH 175 (437)
Q Consensus 104 l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~~~------dg~i~iwd~~~~~~~ 175 (437)
+++.+..++.++.+ .|..+|..+++..-........ ....+. .-...++.++.++. ++.|..+|..+++..
T Consensus 111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPK-VGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCC-ccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence 45567888888888 9999999987543322221100 000111 11223566666665 799999999999876
Q ss_pred ccccccCccccceeeec--CCCCeeEEeeccceee-----ecCCCcE-EEEEeCC--CeEEEEECC--------------
Q 013717 176 KLKTTLPTVNDRLLRFM--LPNSYVTVRRHKKKLW-----IEHGDAV-TGLAVNN--GLIYSVSWD-------------- 231 (437)
Q Consensus 176 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~v-~~~~~~~--~~l~~~~~d-------------- 231 (437)
................. ....+.-........| ..-...+ ..+++++ +.++.+..+
T Consensus 190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence 55443221100000000 0000000000000000 0000001 1233443 455555432
Q ss_pred --CcEEEEECCCcceEEEeeccc----------ccEEEEEEecCC---e-EEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717 232 --KSLKIWRASDLRCLESIKAHE----------DAVNAVAVSAGG---T-VYTGSADRKIRVWAKPFNEKRHALIATLEK 295 (437)
Q Consensus 232 --g~i~iwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~---~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 295 (437)
+.|..+|.++++.+..++... .++ -+....+| + ++.++.+|.+.++|..+++..+ ....
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w----~~~~ 344 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV----AEKV 344 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE----EEES
T ss_pred eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe----eecc
Confidence 359999999999988876321 122 12223467 3 6778889999999987654322 2111
Q ss_pred cc-------------ccE--------------------------EEEEEccCCCEEEEEe--------------------
Q 013717 296 HK-------------SAV--------------------------NALALSDDGTVLFSGA-------------------- 316 (437)
Q Consensus 296 ~~-------------~~i--------------------------~~~~~~~~~~~l~~~~-------------------- 316 (437)
.. .++ ..++++|+..++++..
T Consensus 345 ~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 424 (571)
T 2ad6_A 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF 424 (571)
T ss_dssp STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcc
Confidence 00 111 2467888777776653
Q ss_pred -----------------CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeee
Q 013717 317 -----------------CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCL 379 (437)
Q Consensus 317 -----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 379 (437)
.+|.|..||+.+++............. ..+...+..++.++.||.|+.||.++++ .+
T Consensus 425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~---~~~~t~gg~v~~g~~dg~l~a~D~~tG~---~l 498 (571)
T 2ad6_A 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG---GTLYTKGGLVWYATLDGYLKALDNKDGK---EL 498 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS---BCEEETTTEEEEECTTSEEEEEETTTCC---EE
T ss_pred ccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc---eeEEECCCEEEEEcCCCeEEEEECCCCC---EE
Confidence 357899999998876655432211111 1233446788889999999999999988 45
Q ss_pred eeec
Q 013717 380 AVLE 383 (437)
Q Consensus 380 ~~~~ 383 (437)
..+.
T Consensus 499 w~~~ 502 (571)
T 2ad6_A 499 WNFK 502 (571)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4444
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.89 E-value=3e-07 Score=89.32 Aligned_cols=199 Identities=13% Similarity=0.103 Sum_probs=117.1
Q ss_pred eCCEEEEEecC-eEEEEeCCCCceeeeeccccCCC----Cc-cc-EEEEEEeCCeEEEEecCCeEEEEeCCCCccccccc
Q 013717 107 HHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS----SS-GS-VKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKT 179 (437)
Q Consensus 107 ~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~----h~-~~-v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 179 (437)
.+..|+.++.+ .|..+|..+++..=......... .. .. -..+++.++.++.++.|+.|..+|..+++......
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 46777777777 89999998864322221110000 00 00 12344567778899999999999999998665443
Q ss_pred ccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEEC------CCcEEEEECCCcceEEEeeccc-
Q 013717 180 TLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSW------DKSLKIWRASDLRCLESIKAHE- 252 (437)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~- 252 (437)
....... +.....++ +..+.++++.. +|.|..+|.++++.+..+....
T Consensus 145 ~~~~~~~---------------------~~~~~~P~----v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~ 199 (668)
T 1kv9_A 145 TTDPAKP---------------------YSITGAPR----VVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPG 199 (668)
T ss_dssp CSCTTSS---------------------CBCCSCCE----EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred cCCCCCc---------------------ceecCCCE----EECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCC
Confidence 2110000 00011111 12345555543 5899999999999988875210
Q ss_pred --c----------------------------cEEEEEEecCCe-EEEEeCCC-------------------eEEEecCCC
Q 013717 253 --D----------------------------AVNAVAVSAGGT-VYTGSADR-------------------KIRVWAKPF 282 (437)
Q Consensus 253 --~----------------------------~v~~~~~~~~~~-l~~~~~dg-------------------~v~iwd~~~ 282 (437)
. ....+++.|+.. ++.++.++ .|..+|.++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t 279 (668)
T 1kv9_A 200 DPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT 279 (668)
T ss_dssp CTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT
T ss_pred CCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC
Confidence 0 012367777655 77777666 388898876
Q ss_pred CcccceeeEEeeCcc-------ccEEEEEEccCCC---EEEEEeCCCcEEEEECCCCccc
Q 013717 283 NEKRHALIATLEKHK-------SAVNALALSDDGT---VLFSGACDRSILVWDREDSANH 332 (437)
Q Consensus 283 ~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~ 332 (437)
+...+... ...|. .++....+..+|+ .++.++.+|.++++|.++++..
T Consensus 280 G~~~W~~~--~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 280 GKLAWHYQ--VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp CCEEEEEE--SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CceeeEee--cCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 65333221 11121 2333333334675 6889999999999999998754
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.84 E-value=4.3e-06 Score=74.98 Aligned_cols=223 Identities=11% Similarity=0.077 Sum_probs=132.6
Q ss_pred CCEEEEEecC--eEEEEeCCCC--ceeeeecccc--C--CCCcccEEEEEEeCCe-EEEEecC------CeEEEEeCCCC
Q 013717 108 HNFLYAASSH--EINVYDRTGT--TWTSINTFND--N--DSSSGSVKSVTFCDGK-IFTAHQD------CKIRVWQLTPT 172 (437)
Q Consensus 108 ~~~l~s~~~d--~v~vwd~~~~--~~~~~~~~~~--~--~~h~~~v~~l~~~~~~-l~s~~~d------g~i~iwd~~~~ 172 (437)
+++|+..+.. .|.|+|+.+. +.+..+.+.. . .........+...+++ ++++..+ |.|.+.|.++.
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTC
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCC
Confidence 6677766654 9999999753 2334443310 0 0011244566677776 4555444 78999999988
Q ss_pred cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-------------------CC
Q 013717 173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-------------------WD 231 (437)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-------------------~d 231 (437)
+.......-. +....-..+.|+| +.+++.. .+
T Consensus 175 ~v~~~~~~~~---------------------------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~ 227 (462)
T 2ece_A 175 EPLGKWEIDR---------------------------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYG 227 (462)
T ss_dssp CEEEECCSBC---------------------------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSC
T ss_pred eEEEEEccCC---------------------------CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccC
Confidence 7555443110 0111123466666 5555553 37
Q ss_pred CcEEEEECCCcceEEEeecc--cccEEEEEE--ecCCe--EEEEe-----CCCeEEEecCCCCcccceeeEEe--eCc--
Q 013717 232 KSLKIWRASDLRCLESIKAH--EDAVNAVAV--SAGGT--VYTGS-----ADRKIRVWAKPFNEKRHALIATL--EKH-- 296 (437)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~~--l~~~~-----~dg~v~iwd~~~~~~~~~~~~~~--~~~-- 296 (437)
.+|.+||+.+++.+.++... ......+.| +|+++ ++++- .+++|.+|..+. ..+...+.+ ...
T Consensus 228 d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v 305 (462)
T 2ece_A 228 NRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAEPL 305 (462)
T ss_dssp CEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCEEC
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCccc
Confidence 89999999999888887642 133445555 99998 44444 677888876542 222222221 110
Q ss_pred --------------cccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeee-cc-c--------------ccc
Q 013717 297 --------------KSAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGAL-RG-H--------------GKA 345 (437)
Q Consensus 297 --------------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~-~--------------~~~ 345 (437)
...+..|.+++||++|.++.. .+.|.+||+....... +.... .+ . ...
T Consensus 306 ~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~-lv~~I~tGG~~~~~~~~~G~~~~ggPr 384 (462)
T 2ece_A 306 EGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPV-LTGKVKLGGIFHRADHPAGHKLTGAPQ 384 (462)
T ss_dssp CSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCE-EEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred cccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE-EEEEEEeCCeeccccccccccCCCCCC
Confidence 245788999999999988766 6899999997443222 22222 11 1 123
Q ss_pred eEEEEeeCCEEEEEe
Q 013717 346 ILCLINVAGLLMSGS 360 (437)
Q Consensus 346 i~~~~~~~~~l~~~~ 360 (437)
-..++.++++|+++.
T Consensus 385 ~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 385 MLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSSEEEEEC
T ss_pred EEEEcCCCCEEEEEc
Confidence 466667777777776
No 243
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.84 E-value=3.1e-05 Score=73.63 Aligned_cols=287 Identities=9% Similarity=0.017 Sum_probs=147.8
Q ss_pred EEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEE-EEEEeCCeEEEEe------cCCeEEEEeCCCCcccccccccC
Q 013717 111 LYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVK-SVTFCDGKIFTAH------QDCKIRVWQLTPTKHHKLKTTLP 182 (437)
Q Consensus 111 l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~ 182 (437)
++.++.+ .|..+|..+++..-........ ....+. .-.+.++.++.++ .+|.|+.+|.++++.........
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~-~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~ 202 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIK-VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCC-ccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence 7788888 9999999987543222221100 000111 1122356666665 38999999999998765544322
Q ss_pred ccccceeee--cCCCCe-----eEEeeccceeeecCCCcEE-EEEeCC--CeEEEEECC----------------CcEEE
Q 013717 183 TVNDRLLRF--MLPNSY-----VTVRRHKKKLWIEHGDAVT-GLAVNN--GLIYSVSWD----------------KSLKI 236 (437)
Q Consensus 183 ~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~v~-~~~~~~--~~l~~~~~d----------------g~i~i 236 (437)
......... ...... ..........+..-...+. .+++++ +.++.+..+ +.|..
T Consensus 203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A 282 (599)
T 1w6s_A 203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (599)
T ss_dssp CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence 110000000 000000 0000000000000001111 223333 566666554 47999
Q ss_pred EECCCcceEEEeecccc----------cEEEEEEe-cCC---e-EEEEeCCCeEEEecCCCCcccceeeEE--------e
Q 013717 237 WRASDLRCLESIKAHED----------AVNAVAVS-AGG---T-VYTGSADRKIRVWAKPFNEKRHALIAT--------L 293 (437)
Q Consensus 237 wd~~~~~~~~~~~~~~~----------~v~~~~~~-~~~---~-l~~~~~dg~v~iwd~~~~~~~~~~~~~--------~ 293 (437)
+|.++++.+..++.... ++. +... .+| . ++.++.+|.+.++|.++++..+..... .
T Consensus 283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~ 361 (599)
T 1w6s_A 283 RDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV 361 (599)
T ss_dssp EETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred EeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccc
Confidence 99999999888763221 121 2222 466 4 677889999999998765532211100 0
Q ss_pred e-CccccE--------------------------EEEEEccCCCEEEEEe------------------------------
Q 013717 294 E-KHKSAV--------------------------NALALSDDGTVLFSGA------------------------------ 316 (437)
Q Consensus 294 ~-~~~~~i--------------------------~~~~~~~~~~~l~~~~------------------------------ 316 (437)
. ....++ ..++++|+..++++..
T Consensus 362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 441 (599)
T 1w6s_A 362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG 441 (599)
T ss_dssp CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccC
Confidence 0 000111 2456677666554421
Q ss_pred ---------CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCC
Q 013717 317 ---------CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK 387 (437)
Q Consensus 317 ---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 387 (437)
.+|.|..||+.+++............. -.+...+.+++.++.||.|+.||.++++ .+..++-...
T Consensus 442 p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~---g~~~tagg~vf~gt~dg~l~A~D~~tG~---~lW~~~l~~g 515 (599)
T 1w6s_A 442 PKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWG---GTMATAGDLVFYGTLDGYLKARDSDTGD---LLWKFKIPSG 515 (599)
T ss_dssp TTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCS---BCEEETTTEEEEECTTSEEEEEETTTCC---EEEEEECSSC
T ss_pred CcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccC---cceEecCCEEEEECCCCeEEEEECCCCC---EEEEeeCCCC
Confidence 347899999998876655432211111 1244557788889999999999999988 4444433222
Q ss_pred C-eeEEEEEccCCCCceEEEEEe
Q 013717 388 P-VKSLTAVTEEGQNGVVSVFSG 409 (437)
Q Consensus 388 ~-v~~l~~~~~~~~~~~~~l~s~ 409 (437)
. ..-+.+..++. +|+++.
T Consensus 516 ~~~~P~~y~~~G~----qyv~~~ 534 (599)
T 1w6s_A 516 AIGYPMTYTHKGT----QYVAIY 534 (599)
T ss_dssp CCSCCEEEEETTE----EEEEEE
T ss_pred cEeccEEEEeCCE----EEEEEE
Confidence 1 12244555553 355544
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.83 E-value=8e-06 Score=68.62 Aligned_cols=200 Identities=11% Similarity=0.024 Sum_probs=131.7
Q ss_pred eeeeecCccC--CeEEEEeeC-CEEEEEe-c--C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeE-EEEecC
Q 013717 90 INSVQLGHKL--PIGCIAVHH-NFLYAAS-S--H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKI-FTAHQD 161 (437)
Q Consensus 90 ~~~~~~~h~~--~V~~l~~~~-~~l~s~~-~--d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l-~s~~~d 161 (437)
+.+..+.|.. ....++|++ ..|+.++ . + .|+++|+.+++......+ . .......+++.++.| ++.-.+
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l---~-~~~fgeGi~~~g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM---D-DSYFGEGLTLLNEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC---C-TTCCEEEEEEETTEEEEEETTC
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec---C-CCcceEEEEEeCCEEEEEEecC
Confidence 3445555543 357899983 4555543 2 4 999999999754443333 1 122334677777774 445568
Q ss_pred CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCC
Q 013717 162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASD 241 (437)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~ 241 (437)
+.+.++|..+.+....+.. + ...=..++.+.+.++++..++.|.++|..+
T Consensus 86 ~~v~viD~~t~~v~~~i~~-----------------------------g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t 135 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTH-----------------------------Q-MKDGWGLATDGKILYGSDGTSILYEIDPHT 135 (266)
T ss_dssp SEEEEEETTTTEEEEEEEC-----------------------------C-SSSCCEEEECSSSEEEECSSSEEEEECTTT
T ss_pred CEEEEEECCCCcEEEEEEC-----------------------------C-CCCeEEEEECCCEEEEECCCCeEEEEECCC
Confidence 8999999998875544321 1 011134666676666666789999999999
Q ss_pred cceEEEeeccc-----ccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCc-------------cccEEE
Q 013717 242 LRCLESIKAHE-----DAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH-------------KSAVNA 302 (437)
Q Consensus 242 ~~~~~~~~~~~-----~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------------~~~i~~ 302 (437)
.+.+..+.-.. ..++.+.+. +++ ++....++.|.+.|..+.. .+..+... ....+.
T Consensus 136 ~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~----V~~~I~~~g~~~~~~~~~~~~~~v~nG 210 (266)
T 2iwa_A 136 FKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGT----LLGWILLPNLRKKLIDEGFRDIDVLNG 210 (266)
T ss_dssp CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC----EEEEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred CcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCc----EEEEEECCCcccccccccccccCceEE
Confidence 99888876321 246788888 778 4455568999999887654 44444321 135689
Q ss_pred EEEccCCCE-EEEEeCCCcEEEEECCC
Q 013717 303 LALSDDGTV-LFSGACDRSILVWDRED 328 (437)
Q Consensus 303 ~~~~~~~~~-l~~~~~dg~i~i~d~~~ 328 (437)
|+|+|+++. ++++...+.|.+.++..
T Consensus 211 Ia~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 211 IAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 999999875 45555788898888754
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.80 E-value=7.1e-06 Score=68.08 Aligned_cols=188 Identities=12% Similarity=0.057 Sum_probs=123.1
Q ss_pred eeeeecCccCC--eEEEEee-CCEEEEEec-C--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEE-ecCC
Q 013717 90 INSVQLGHKLP--IGCIAVH-HNFLYAASS-H--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTA-HQDC 162 (437)
Q Consensus 90 ~~~~~~~h~~~--V~~l~~~-~~~l~s~~~-d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-~~dg 162 (437)
+.+..+.|... ...|.|+ +.++.+.+. + .|+++|+++++......+ +....-..++..++.|+.. -.++
T Consensus 32 ~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----~~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIEL----GKRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEEC----CTTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEec----CCccceeEEEEeCCEEEEEEeeCC
Confidence 44555656544 4888898 554555554 2 899999999755444433 1122234567777775444 4688
Q ss_pred eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc
Q 013717 163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL 242 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~ 242 (437)
.+.+||.++.+....+.. ...=..++...+.|+....++.|.++|..+.
T Consensus 108 ~v~v~D~~t~~~~~ti~~-------------------------------~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~ 156 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNY-------------------------------DGEGWGLTHNDQYLIMSDGTPVLRFLDPESL 156 (262)
T ss_dssp EEEEEETTTCCEEEEEEC-------------------------------SSCCCCEEECSSCEEECCSSSEEEEECTTTC
T ss_pred EEEEEECccCcEEEEEEC-------------------------------CCCceEEecCCCEEEEECCCCeEEEEcCCCC
Confidence 999999998876555431 1111355666666666666788999999999
Q ss_pred ceEEEeecc--c---ccEEEEEEecCCeE-EEEeCCCeEEEecCCCCcccceeeEEeeC------------ccccEEEEE
Q 013717 243 RCLESIKAH--E---DAVNAVAVSAGGTV-YTGSADRKIRVWAKPFNEKRHALIATLEK------------HKSAVNALA 304 (437)
Q Consensus 243 ~~~~~~~~~--~---~~v~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------------~~~~i~~~~ 304 (437)
+.+..+... . ..++.+.+. +|++ +..-.++.|.+.|..++. .+..+.. ...-.+.|+
T Consensus 157 ~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~----V~~~Id~~~L~~~~~~~~~~~~vlNGIA 231 (262)
T 3nol_A 157 TPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGK----VTGIIDLNGILAEAGPLPSPIDVLNGIA 231 (262)
T ss_dssp SEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB----EEEEEECTTGGGGSCSCCSSCCCEEEEE
T ss_pred eEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCc----EEEEEECCcCccccccccCcCCceEEEE
Confidence 998887632 1 345667776 7884 444468899999877654 3333332 123568999
Q ss_pred EccCCCEEEEEeC
Q 013717 305 LSDDGTVLFSGAC 317 (437)
Q Consensus 305 ~~~~~~~l~~~~~ 317 (437)
|+|+++.|++.+.
T Consensus 232 ~dp~~~~lfVTGK 244 (262)
T 3nol_A 232 WDKEHHRLFVTGK 244 (262)
T ss_dssp EETTTTEEEEEET
T ss_pred EcCCCCEEEEECC
Confidence 9998887777654
No 246
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.79 E-value=3e-06 Score=70.33 Aligned_cols=186 Identities=9% Similarity=0.118 Sum_probs=122.3
Q ss_pred eeeeecCccC--CeEEEEeeC-CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeE
Q 013717 90 INSVQLGHKL--PIGCIAVHH-NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKI 164 (437)
Q Consensus 90 ~~~~~~~h~~--~V~~l~~~~-~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i 164 (437)
+.+..+.|.. -...|.|++ .++++.+.+ .|+++|+++++..... + .. ...-..+++.++. ++..-.++.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l---~~-~~FgeGit~~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R---LG-NIFAEGLASDGERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E---CT-TCCEEEEEECSSCEEEEESSSCEE
T ss_pred EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C---CC-CcceeEEEEeCCEEEEEEccCCEE
Confidence 3445555543 347899994 455555555 9999999997554433 3 21 2222446777777 4445568999
Q ss_pred EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcce
Q 013717 165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRC 244 (437)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 244 (437)
.+||.++.+....+.. ...=..++...+.|+.+..++.|.++|.++.+.
T Consensus 119 ~V~D~~Tl~~~~ti~~-------------------------------~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v 167 (268)
T 3nok_A 119 FTWSGMPPQRERTTRY-------------------------------SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFAL 167 (268)
T ss_dssp EEEETTTTEEEEEEEC-------------------------------SSCCCCEEEETTEEEEECSSSEEEEECTTTCCE
T ss_pred EEEECCcCcEEEEEeC-------------------------------CCceeEEecCCCEEEEECCCCEEEEEcCCCCeE
Confidence 9999998876655442 112245666677777777799999999999999
Q ss_pred EEEeeccc-----ccEEEEEEecCCeEE-EEeCCCeEEEecCCCCcccceeeEEeeC-------------ccccEEEEEE
Q 013717 245 LESIKAHE-----DAVNAVAVSAGGTVY-TGSADRKIRVWAKPFNEKRHALIATLEK-------------HKSAVNALAL 305 (437)
Q Consensus 245 ~~~~~~~~-----~~v~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~-------------~~~~i~~~~~ 305 (437)
+..+.... ..++.+.|. +|++. ....++.|.+.|..++. .+..+.. ...-.+.|++
T Consensus 168 ~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~----V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~ 242 (268)
T 3nok_A 168 VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT----VVGVIDASALTRAVAGQVTNPEAVLNGIAV 242 (268)
T ss_dssp EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB----EEEEEECHHHHHHHTTTCCCTTCCEEEEEE
T ss_pred EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc----EEEEEECCCCcccccccccCcCCceEEEEE
Confidence 88876322 245677777 77844 44468899999887654 3333331 1235789999
Q ss_pred ccCCCEEEEEe
Q 013717 306 SDDGTVLFSGA 316 (437)
Q Consensus 306 ~~~~~~l~~~~ 316 (437)
+|+++.|+..+
T Consensus 243 dp~~~rlfVTG 253 (268)
T 3nok_A 243 EPGSGRIFMTG 253 (268)
T ss_dssp CTTTCCEEEEE
T ss_pred cCCCCEEEEeC
Confidence 99776555544
No 247
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.78 E-value=1.7e-05 Score=71.15 Aligned_cols=185 Identities=10% Similarity=-0.004 Sum_probs=112.1
Q ss_pred EEEeCC-CeEEEEECC------CcEEEEECCCcceEEEeecccc---cEEEEEEecCCe-EEEEe---------------
Q 013717 217 GLAVNN-GLIYSVSWD------KSLKIWRASDLRCLESIKAHED---AVNAVAVSAGGT-VYTGS--------------- 270 (437)
Q Consensus 217 ~~~~~~-~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~-l~~~~--------------- 270 (437)
.+...| ..++++..+ |.|.++|.++++.+..+..... --..+-|+|+++ +++..
T Consensus 142 ~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~ 221 (462)
T 2ece_A 142 TVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH 221 (462)
T ss_dssp EEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred ceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence 444555 444544444 7899999999999999873222 234577899998 44442
Q ss_pred ----CCCeEEEecCCCCcccceeeEEeeCc--cccEEEEEE--ccCCCEEEEEe------CCCcEEEEECCCCccceEEe
Q 013717 271 ----ADRKIRVWAKPFNEKRHALIATLEKH--KSAVNALAL--SDDGTVLFSGA------CDRSILVWDREDSANHMVVT 336 (437)
Q Consensus 271 ----~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~ 336 (437)
.+..|.+||+... +.+.++... ......+.| +|+++++++++ .+++|.+|....+.......
T Consensus 222 ~~~~~~d~V~v~D~~~~----k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 222 LKDRYGNRIHFWDLRKR----KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp HHHHSCCEEEEEETTTT----EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred hhhccCCEEEEEECCCC----cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence 3789999998753 345555532 234556656 99999888777 46788887765432111111
Q ss_pred eeecc------------------cccceEEEEeeCCEEEEEeC-CCcEEEeeCCCCCCeeeeeeecCCC-----------
Q 013717 337 GALRG------------------HGKAILCLINVAGLLMSGSA-DRTVRIWQRGSDGRFGCLAVLEGHT----------- 386 (437)
Q Consensus 337 ~~~~~------------------~~~~i~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~h~----------- 386 (437)
..+.. ....-..++.++++|+++.. .+.|.+||+......+.+..+.-..
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~ 377 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH 377 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence 00000 11122345556666666555 6899999997544344554443210
Q ss_pred ---CCeeEEEEEccCCCCceEEEEEec
Q 013717 387 ---KPVKSLTAVTEEGQNGVVSVFSGS 410 (437)
Q Consensus 387 ---~~v~~l~~~~~~~~~~~~~l~s~~ 410 (437)
+.-..++++|++. +|+.+.
T Consensus 378 ~~~ggPr~~~lSpDGk-----~LyVaN 399 (462)
T 2ece_A 378 KLTGAPQMLEISRDGR-----RVYVTN 399 (462)
T ss_dssp CCCSCCCCEEECTTSS-----EEEEEC
T ss_pred cCCCCCCEEEEcCCCC-----EEEEEc
Confidence 1357899999985 455554
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.75 E-value=3.8e-06 Score=69.74 Aligned_cols=181 Identities=12% Similarity=0.079 Sum_probs=114.5
Q ss_pred EEEEEeCC-CeEEEEECCC--cEEEEECCCcceEEEeecccccE--EEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717 215 VTGLAVNN-GLIYSVSWDK--SLKIWRASDLRCLESIKAHEDAV--NAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 215 v~~~~~~~-~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~ 288 (437)
...+.|+. .++.+.+.+| .|+++|+++++.+..+.... .. ..+++. .++ .+..-.++.+.+||..+..
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~---- 118 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLR---- 118 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE-TTEEEEEESSSSEEEEEETTTCC----
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe-CCEEEEEEeeCCEEEEEECccCc----
Confidence 46788877 4455556655 89999999999998886432 33 234444 234 4555568999999876543
Q ss_pred eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccc-cceEEEEeeCCEEEEEe-CCCcEE
Q 013717 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHG-KAILCLINVAGLLMSGS-ADRTVR 366 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~l~~~~-~dg~i~ 366 (437)
.+.++.... ....+++|++.|+.+..++.|.++|..+.+....+.-...+.. ..+..+.+.+..|.+.. .++.|.
T Consensus 119 ~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 119 QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIV 195 (262)
T ss_dssp EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEE
T ss_pred EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEE
Confidence 555555322 2233446788888777788899999988764443332221222 22344555555455554 578999
Q ss_pred EeeCCCCCCeeeeeeecC------------CCCCeeEEEEEccCCCCceEEEEEecC
Q 013717 367 IWQRGSDGRFGCLAVLEG------------HTKPVKSLTAVTEEGQNGVVSVFSGSL 411 (437)
Q Consensus 367 iwd~~~~~~~~~~~~~~~------------h~~~v~~l~~~~~~~~~~~~~l~s~~~ 411 (437)
+.|..+++ .+..+.. -....+.|++.|+.+ +++++|-.
T Consensus 196 vIDp~tG~---V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~----~lfVTGK~ 245 (262)
T 3nol_A 196 RIDPETGK---VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH----RLFVTGKL 245 (262)
T ss_dssp EECTTTCB---EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT----EEEEEETT
T ss_pred EEECCCCc---EEEEEECCcCccccccccCcCCceEEEEEcCCCC----EEEEECCC
Confidence 99999887 3333321 123568999999876 36777644
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.72 E-value=3e-05 Score=63.81 Aligned_cols=188 Identities=11% Similarity=0.059 Sum_probs=123.1
Q ss_pred eeeeecCcc--CCeEEEEeeCC-EEEEEec--C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCC
Q 013717 90 INSVQLGHK--LPIGCIAVHHN-FLYAASS--H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDC 162 (437)
Q Consensus 90 ~~~~~~~h~--~~V~~l~~~~~-~l~s~~~--d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg 162 (437)
+.+..+.|. .-...|.|+++ ++.+.+. . .|+++|+++++......+. ....-..+++.++. ++..-.++
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----~~~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVP----PPYFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECC----TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCC----CCcceeEEEEeCCEEEEEEeeCC
Confidence 445555554 44669999944 4445444 2 8999999997555444431 11222456667777 44455789
Q ss_pred eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc
Q 013717 163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL 242 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~ 242 (437)
.+.+||.++.+....+.. ...=..++...+.|+.+..++.|.++|..+.
T Consensus 86 ~v~v~D~~tl~~~~ti~~-------------------------------~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~ 134 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRY-------------------------------PGEGWALTSDDSHLYMSDGTAVIRKLDPDTL 134 (243)
T ss_dssp EEEEEETTTTEEEEEEEC-------------------------------SSCCCEEEECSSCEEEECSSSEEEEECTTTC
T ss_pred EEEEEECCcCcEEEEEeC-------------------------------CCCceEEeeCCCEEEEECCCCeEEEEeCCCC
Confidence 999999998876555431 1122466666766666677899999999999
Q ss_pred ceEEEeeccc-----ccEEEEEEecCCeE-EEEeCCCeEEEecCCCCcccceeeEEeeC-------------ccccEEEE
Q 013717 243 RCLESIKAHE-----DAVNAVAVSAGGTV-YTGSADRKIRVWAKPFNEKRHALIATLEK-------------HKSAVNAL 303 (437)
Q Consensus 243 ~~~~~~~~~~-----~~v~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-------------~~~~i~~~ 303 (437)
+.+..+.... ..++.+.+. +|++ +..-.+..|.+.|..++. .+..+.. ...-.+.|
T Consensus 135 ~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~----V~~~idl~~l~~~~~~~~~~~~~vlNGI 209 (243)
T 3mbr_X 135 QQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGK----VVAWIDLQALVPDADALTDSTNDVLNGI 209 (243)
T ss_dssp CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB----EEEEEECGGGSTTTTSCCCTTSSCEEEE
T ss_pred eEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC----EEEEEECCcCccccccccCCcCCceEEE
Confidence 9988876322 346677766 7784 444468899999887654 3333321 22357899
Q ss_pred EEccCCCEEEEEeC
Q 013717 304 ALSDDGTVLFSGAC 317 (437)
Q Consensus 304 ~~~~~~~~l~~~~~ 317 (437)
+++|+++.|++.+.
T Consensus 210 A~d~~~~~lfVTGK 223 (243)
T 3mbr_X 210 AFDAEHDRLFVTGK 223 (243)
T ss_dssp EEETTTTEEEEEET
T ss_pred EEcCCCCEEEEECC
Confidence 99998776666653
No 250
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.71 E-value=0.00012 Score=64.45 Aligned_cols=280 Identities=10% Similarity=0.057 Sum_probs=149.7
Q ss_pred CccCCeEEEEee--CCEEEEEecCeEEEEeCCCC-ceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGT-TWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPT 172 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~ 172 (437)
.....+.+|.|. +..+++|..+.| +...+.+ .++.+..- .......+.+|.+.++.++.++.++.|.. ..+.+
T Consensus 33 ~~~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~--~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 33 PTTATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLV--LDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGG 108 (327)
T ss_dssp SCSSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCC--CSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTT
T ss_pred CCCCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCC--CCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCC
Confidence 334579999996 555664443355 3333332 35544321 01234578999998877666667775543 33334
Q ss_pred cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC-CCeEEEEECCCcEEEEECCCcceEEEe-ec
Q 013717 173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN-NGLIYSVSWDKSLKIWRASDLRCLESI-KA 250 (437)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~ 250 (437)
+......... .+...+..+.+. +..++.++.+|.|..- ...++.-... ..
T Consensus 109 ~tW~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~ 160 (327)
T 2xbg_A 109 QSWSQIPLDP---------------------------KLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQE 160 (327)
T ss_dssp SSCEECCCCT---------------------------TCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECS
T ss_pred CCceECcccc---------------------------CCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecC
Confidence 4333222110 012234555553 3555556666654332 1223322222 23
Q ss_pred ccccEEEEEEecCCeEEEEeCCCeEEE-ecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717 251 HEDAVNAVAVSAGGTVYTGSADRKIRV-WAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS 329 (437)
Q Consensus 251 ~~~~v~~~~~~~~~~l~~~~~dg~v~i-wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (437)
....+..+++.+++.++..+.+|.+.. .|- +...++.+. ......+..+.+.++++.++ ++.+|.+++.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS 235 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCC
Confidence 456789999999888555555555544 331 123333332 23456788999999887654 456787777643222
Q ss_pred ccceEEeeee-cccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717 330 ANHMVVTGAL-RGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF 407 (437)
Q Consensus 330 ~~~~~~~~~~-~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~ 407 (437)
+. ....... ......+..+.+.++ .++.++.+|.| ++....++.+..+.........+.++.|.+++ .++
T Consensus 236 ~t-W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~------~~~ 307 (327)
T 2xbg_A 236 EN-WGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD------QGF 307 (327)
T ss_dssp EE-ECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT------EEE
T ss_pred Ce-eEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC------ceE
Confidence 21 1111100 012234667766533 44445557777 45555566555443332344678889887554 477
Q ss_pred EecCCCcEEEEee
Q 013717 408 SGSLDGEIRAWQV 420 (437)
Q Consensus 408 s~~~dg~i~iw~~ 420 (437)
.++.+|.|.-++-
T Consensus 308 ~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 308 ILGQKGILLRYVT 320 (327)
T ss_dssp EECSTTEEEEECC
T ss_pred EEcCCceEEEEcC
Confidence 7888997766653
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.71 E-value=1.3e-05 Score=76.24 Aligned_cols=200 Identities=10% Similarity=-0.004 Sum_probs=112.9
Q ss_pred eCCEEEEEec-C-eEEEEeC-CCCceeeeeccccCCC-Cc-----ccEEEEEEeCCeEEEEecCCeEEEEeCCCCccccc
Q 013717 107 HHNFLYAASS-H-EINVYDR-TGTTWTSINTFNDNDS-SS-----GSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKL 177 (437)
Q Consensus 107 ~~~~l~s~~~-d-~v~vwd~-~~~~~~~~~~~~~~~~-h~-----~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 177 (437)
.+..++.++. + .|.-+|. .+++..=......... +. ..-..+++.++.++.++.|+.|..+|..+++....
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 3666666666 6 8888998 7764322222110000 00 00123455677888999999999999999876544
Q ss_pred ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEEC------CCcEEEEECCCcceEEEeecc
Q 013717 178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSW------DKSLKIWRASDLRCLESIKAH 251 (437)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 251 (437)
......... +.....++ +....+++++. ++.|..+|.++++.+..+...
T Consensus 141 ~~~~~~~~~---------------------~~~~~~P~----v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 141 VEVCDPKVG---------------------STLTQAPF----VAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EECCCGGGT---------------------CBCCSCCE----EETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred ecCCCCCcc---------------------ceeccCCE----EECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 321100000 00011111 12356666655 799999999999998877632
Q ss_pred ccc-------------------------------------E-EEEEEecCC-eEEEEeCC----------------CeEE
Q 013717 252 EDA-------------------------------------V-NAVAVSAGG-TVYTGSAD----------------RKIR 276 (437)
Q Consensus 252 ~~~-------------------------------------v-~~~~~~~~~-~l~~~~~d----------------g~v~ 276 (437)
... + ..+++.++. .++.+..+ +.|.
T Consensus 196 ~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~ 275 (571)
T 2ad6_A 196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW 275 (571)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred CCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEE
Confidence 110 0 124556644 45555532 3588
Q ss_pred EecCCCCcccceeeEEeeCc--------cccEEEEEEccCCC---EEEEEeCCCcEEEEECCCCccceE
Q 013717 277 VWAKPFNEKRHALIATLEKH--------KSAVNALALSDDGT---VLFSGACDRSILVWDREDSANHMV 334 (437)
Q Consensus 277 iwd~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~ 334 (437)
.+|.+++...+... ...| ..++. +....+|+ .++.++.+|.++++|..+++....
T Consensus 276 Ald~~tG~~~W~~~--~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~ 341 (571)
T 2ad6_A 276 GRDLDTGMAKWGYQ--KTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp EEETTTCCEEEEEE--SSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEecCCCcEEEEec--CCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEee
Confidence 88887665332221 1111 12222 33334774 677888999999999998876544
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.71 E-value=5.5e-06 Score=68.73 Aligned_cols=183 Identities=12% Similarity=0.066 Sum_probs=117.8
Q ss_pred CcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccE--EEEEEecCCeEEEEeCCCeEEEecCCCCccccee
Q 013717 213 DAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAV--NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHAL 289 (437)
Q Consensus 213 ~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 289 (437)
.....+.|+. .++.+.+.+|.|+++|+++++.+..+ . .... ..+++..+...+..-.++.+.+||..+. +.
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl----~~ 128 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP----QR 128 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT----EE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC----cE
Confidence 3457888888 55666677889999999999988887 2 2333 3355543322555667899999987654 35
Q ss_pred eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc-ccceEEEEeeCCEEEEEe-CCCcEEE
Q 013717 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH-GKAILCLINVAGLLMSGS-ADRTVRI 367 (437)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~l~~~~-~dg~i~i 367 (437)
+.++..... -..++ +|++.|+.+..++.|+++|..+.+....+.-...+. -..+..+.+.+..|.+.. .+..|.+
T Consensus 129 ~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 129 ERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLE 205 (268)
T ss_dssp EEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred EEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEE
Confidence 555553222 23333 578888888889999999998876443332221111 113355666555555554 5778999
Q ss_pred eeCCCCCCeeeeeeecC-------------CCCCeeEEEEEccCCCCceEEEEEecC
Q 013717 368 WQRGSDGRFGCLAVLEG-------------HTKPVKSLTAVTEEGQNGVVSVFSGSL 411 (437)
Q Consensus 368 wd~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~~~~~~~~l~s~~~ 411 (437)
.|..+++ .+..+.. -..-.+.||+.|+.+. +++||-.
T Consensus 206 IDp~TG~---V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r----lfVTGK~ 255 (268)
T 3nok_A 206 IDPATGT---VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR----IFMTGKL 255 (268)
T ss_dssp ECTTTCB---EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC----EEEEETT
T ss_pred EeCCCCc---EEEEEECCCCcccccccccCcCCceEEEEEcCCCCE----EEEeCCC
Confidence 9999887 3333221 1246799999998764 7777744
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.69 E-value=3.5e-05 Score=63.42 Aligned_cols=192 Identities=13% Similarity=0.058 Sum_probs=120.4
Q ss_pred CcEEEEEeCCCeEE-EEECC--CcEEEEECCCcceEEEeecccc-cEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717 213 DAVTGLAVNNGLIY-SVSWD--KSLKIWRASDLRCLESIKAHED-AVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 213 ~~v~~~~~~~~~l~-~~~~d--g~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
.....+.|+++.|+ +.+.+ ..|+.+|+.+++.+..+..... .-..+++. .++ ++..-.++.+.+||..+.
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl---- 95 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATL---- 95 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTT----
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcC----
Confidence 45678999885544 44444 4899999999999988863322 12334444 344 555667899999987654
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccc-cceEEEEeeCCEEEEEe-CCCcE
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHG-KAILCLINVAGLLMSGS-ADRTV 365 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~l~~~~-~dg~i 365 (437)
+.+.++..... -..+ .++++.|+.+..++.|.++|..+.+....+.-...+.. ..+..+.+.+..|.+.. .+..|
T Consensus 96 ~~~~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I 172 (243)
T 3mbr_X 96 TPRARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRI 172 (243)
T ss_dssp EEEEEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEE
T ss_pred cEEEEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeE
Confidence 45666653322 2333 45777777777899999999988764433322211111 23455666666455544 57789
Q ss_pred EEeeCCCCCCeeeeeeec-------------CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 366 RIWQRGSDGRFGCLAVLE-------------GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 366 ~iwd~~~~~~~~~~~~~~-------------~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
.+.|..+++ .+..+. .-..-.+.|++.|+.+ ++++||-.= =++|.++
T Consensus 173 ~vIDp~tG~---V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~----~lfVTGK~w--p~~~~v~ 232 (243)
T 3mbr_X 173 ARIDPASGK---VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD----RLFVTGKRW--PMLYEIR 232 (243)
T ss_dssp EEECTTTCB---EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT----EEEEEETTC--SEEEEEE
T ss_pred EEEECCCCC---EEEEEECCcCccccccccCCcCCceEEEEEcCCCC----EEEEECCCC--CcEEEEE
Confidence 999999987 333322 1123568999999876 477777543 3444444
No 254
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.66 E-value=5.9e-06 Score=73.44 Aligned_cols=225 Identities=9% Similarity=0.054 Sum_probs=124.5
Q ss_pred CccCCeEEEEee--CCEEEEEec-----C-eEEEEeCCCCceeeeeccc-cCCCCcccEEEEEEeCC--e-EEEEe---c
Q 013717 96 GHKLPIGCIAVH--HNFLYAASS-----H-EINVYDRTGTTWTSINTFN-DNDSSSGSVKSVTFCDG--K-IFTAH---Q 160 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~-----d-~v~vwd~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~--~-l~s~~---~ 160 (437)
+|...+..++++ ++++++-.. + .|.+||+.+++......+. ....+...+..++++++ . +++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 466789999998 555554433 5 9999999986533322221 11123456789999843 3 45544 6
Q ss_pred CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCC-cEEEE
Q 013717 161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDK-SLKIW 237 (437)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg-~i~iw 237 (437)
++.|.+||+.+++....+...+........+......+......... ......+..+++++ +.|+.+..++ .|..+
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~-~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~ 222 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTV-IRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI 222 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCE-ECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCce-eceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence 78999999987765443321000000000000000000000000000 00123468899998 5788777665 44444
Q ss_pred ECC---Ccc-----eEE--EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEE
Q 013717 238 RAS---DLR-----CLE--SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALAL 305 (437)
Q Consensus 238 d~~---~~~-----~~~--~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~ 305 (437)
+.. .+. ... ...++......++++++|. +++...++.|.+||...+. ....... ....+..++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~----~~~~~~~~~~~~p~~va~ 298 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA----YKLLVTDEKLSWTDSFNF 298 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE----EEEEEECGGGSCEEEEEE
T ss_pred EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC----EEEEEECCceecCCeeEE
Confidence 431 110 000 1112334566789999999 6667778999999873221 2112221 2456899999
Q ss_pred ccCCCEEEEEeCCCcEEEEE
Q 013717 306 SDDGTVLFSGACDRSILVWD 325 (437)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d 325 (437)
.++|+++++.+..+.+.+|.
T Consensus 299 ~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 299 GSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CTTSCEEEEECCGGGSGGGB
T ss_pred CCCCcEEEEeCccccccccc
Confidence 99998888877666554444
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.65 E-value=0.00015 Score=69.05 Aligned_cols=165 Identities=12% Similarity=0.007 Sum_probs=99.5
Q ss_pred CcEEEEECCCcceEEEeec--cc--------ccEEEEEEe-cCC---e-EEEEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717 232 KSLKIWRASDLRCLESIKA--HE--------DAVNAVAVS-AGG---T-VYTGSADRKIRVWAKPFNEKRHALIATLEKH 296 (437)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~---~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (437)
+.|..+|..+++.+..++. |. .++. +... .+| . ++.++.+|.+.++|..+++.. ..+...
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l----w~~~~~ 365 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ----NAFPFV 365 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE----EEEESS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEe----cccccc
Confidence 6899999999999988763 21 1221 2221 356 3 778899999999998765432 111111
Q ss_pred c-------------cc--------------------------------EEEEEEccCCCEEEEEe---------------
Q 013717 297 K-------------SA--------------------------------VNALALSDDGTVLFSGA--------------- 316 (437)
Q Consensus 297 ~-------------~~--------------------------------i~~~~~~~~~~~l~~~~--------------- 316 (437)
. .+ -..++++|+..++++..
T Consensus 366 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~ 445 (582)
T 1flg_A 366 DNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYT 445 (582)
T ss_dssp SCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCC
T ss_pred cCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccccccc
Confidence 0 00 01356677655555432
Q ss_pred ------------------CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeee
Q 013717 317 ------------------CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGC 378 (437)
Q Consensus 317 ------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 378 (437)
.+|.|..||+.+++............. ..+...+.+++.|+.||.++.||.++++ .
T Consensus 446 ~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~---g~~~tagglvf~g~~dg~l~A~D~~tG~---~ 519 (582)
T 1flg_A 446 KGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWA---GVLATAGNLVFTGTGDGYFKAFDAKSGK---E 519 (582)
T ss_dssp TTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCS---CCEEETTTEEEEECTTSEEEEEETTTCC---E
T ss_pred CCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcc---cceEeCCCEEEEECCCCcEEEEECCCCC---E
Confidence 368899999999886665543221111 1233457788889999999999999988 5
Q ss_pred eeeecCCCCCe-eEEEEEccCCCCceEEEEEecC
Q 013717 379 LAVLEGHTKPV-KSLTAVTEEGQNGVVSVFSGSL 411 (437)
Q Consensus 379 ~~~~~~h~~~v-~~l~~~~~~~~~~~~~l~s~~~ 411 (437)
+..++...+.+ .-+.+..++. +|++..+.
T Consensus 520 lW~~~~~~g~~a~P~~y~~~G~----qYv~~~~G 549 (582)
T 1flg_A 520 LWKFQTGSGIVSPPITWEQDGE----QYLGVTVG 549 (582)
T ss_dssp EEEEECSSCCCSCCEEEEETTE----EEEEEEEC
T ss_pred EEEecCCCCcccCceEEEECCE----EEEEEEcc
Confidence 55554432221 2255656654 36655443
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.65 E-value=2.3e-05 Score=74.51 Aligned_cols=201 Identities=13% Similarity=0.040 Sum_probs=112.8
Q ss_pred eCCEEEEEec-C-eEEEEeC-CCCceeeeeccccCCCCc------ccEEEEEE--eCCe----EEEEecCCeEEEEeCCC
Q 013717 107 HHNFLYAASS-H-EINVYDR-TGTTWTSINTFNDNDSSS------GSVKSVTF--CDGK----IFTAHQDCKIRVWQLTP 171 (437)
Q Consensus 107 ~~~~l~s~~~-d-~v~vwd~-~~~~~~~~~~~~~~~~h~------~~v~~l~~--~~~~----l~s~~~dg~i~iwd~~~ 171 (437)
.+..|+.++. + .|.-+|. .+++..=........... .....+++ .++. ++.++.|+.|..+|..+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 3666777776 6 8888888 776432222111000000 01123455 4555 88999999999999999
Q ss_pred CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEE------CCCcEEEEECCCcceE
Q 013717 172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVS------WDKSLKIWRASDLRCL 245 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~ 245 (437)
++............. +.-...++ +....+++++ .+|.|+.+|.++++.+
T Consensus 141 G~~~W~~~~~~~~~~---------------------~~~~ssP~----v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 141 GETVWKVENSDIKVG---------------------STLTIAPY----VVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp CCEEEEEECCCGGGT---------------------CBCCSCCE----EETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred CCEEEeecCCCCCcc---------------------ceeecCCE----EECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 976544321100000 00011111 1234555555 3899999999999998
Q ss_pred EEeeccccc-------------------------------------E-EEEEEecCCe-EEEEeCC--------------
Q 013717 246 ESIKAHEDA-------------------------------------V-NAVAVSAGGT-VYTGSAD-------------- 272 (437)
Q Consensus 246 ~~~~~~~~~-------------------------------------v-~~~~~~~~~~-l~~~~~d-------------- 272 (437)
..+...... + ..+++.++.. ++.+..+
T Consensus 196 W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~ 275 (599)
T 1w6s_A 196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNK 275 (599)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcc
Confidence 877632111 0 1234555444 6666655
Q ss_pred --CeEEEecCCCCcccceeeEEeeCcc--------ccEEEEEEc-cCC---CEEEEEeCCCcEEEEECCCCccceEE
Q 013717 273 --RKIRVWAKPFNEKRHALIATLEKHK--------SAVNALALS-DDG---TVLFSGACDRSILVWDREDSANHMVV 335 (437)
Q Consensus 273 --g~v~iwd~~~~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (437)
+.|..+|.+++...+.. ....|. .++. +... .+| ..++.++.+|.++++|.++++.....
T Consensus 276 y~~sv~Ald~~TG~~~W~~--q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 276 WTMTIFGRDADTGEAKFGY--QKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp TSSEEEEEETTTCCEEEEE--ESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccceEEEEeCCCCceeeEe--ecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 37888888766533321 111121 2222 2322 467 46778899999999999998765543
No 257
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.64 E-value=1.5e-06 Score=77.30 Aligned_cols=261 Identities=11% Similarity=0.002 Sum_probs=147.7
Q ss_pred eeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEe----------cC-eEEEEeCCCCceeeeeccccCCCC---
Q 013717 79 TINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAAS----------SH-EINVYDRTGTTWTSINTFNDNDSS--- 141 (437)
Q Consensus 79 ~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~----------~d-~v~vwd~~~~~~~~~~~~~~~~~h--- 141 (437)
++.+.|.......-..- |.. + .++++ +++++.+. .+ .|.+||..++ +.+.++....+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--CEEEEEECCCccccc
Confidence 77788887755444443 654 4 68888 77777775 24 9999999995 444444211000
Q ss_pred -cccEEEEEEeCCe--EEEEec--CCeEEE--EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717 142 -SGSVKSVTFCDGK--IFTAHQ--DCKIRV--WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA 214 (437)
Q Consensus 142 -~~~v~~l~~~~~~--l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (437)
......+++++++ ++.+.. +..+.+ +|..+ ...+. .+ . .
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~-v~----------------------------~--~ 167 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTK-SA----------------------------S--C 167 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEE-CS----------------------------S--C
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEE-CC----------------------------C--c
Confidence 1345688999775 666653 467888 88865 11111 00 0 0
Q ss_pred EEEEEeCC-CeEEEEECCCcEEEEECCC-----cceEE----EeecccccEEEEEEecCC-eEEEEeCCCeEEEecCCCC
Q 013717 215 VTGLAVNN-GLIYSVSWDKSLKIWRASD-----LRCLE----SIKAHEDAVNAVAVSAGG-TVYTGSADRKIRVWAKPFN 283 (437)
Q Consensus 215 v~~~~~~~-~~l~~~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 283 (437)
+ .+...+ ..+++.+.||.+.+.|+.+ ++... .+.....+. + .+++ .++..+. +.|.+.|+...
T Consensus 168 ~-~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~ 241 (368)
T 1mda_H 168 F-HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAA 241 (368)
T ss_dssp C-CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSS
T ss_pred e-EEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCC
Confidence 0 011112 4555667788888888876 43321 111122333 3 4444 4666666 99999988543
Q ss_pred cccceeeEEeeC-------c---cccEEEEEEccCCCEEEEEeC---------CCcEEEEECCCCccceEEeeeeccccc
Q 013717 284 EKRHALIATLEK-------H---KSAVNALALSDDGTVLFSGAC---------DRSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 284 ~~~~~~~~~~~~-------~---~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
.. +.+..+.. + ......++++||+++++++.. ++.+.++|+.+.+.... +....
T Consensus 242 ~~--~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~----i~vg~- 314 (368)
T 1mda_H 242 GA--TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----ISNGH- 314 (368)
T ss_dssp CC--EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC----CEEEE-
T ss_pred cc--eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE----EECCC-
Confidence 21 11221110 0 011112689999998887643 23567999988763322 22111
Q ss_pred ceEEEEe--eCC-EEEEEe-CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE
Q 013717 345 AILCLIN--VAG-LLMSGS-ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV 395 (437)
Q Consensus 345 ~i~~~~~--~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 395 (437)
....+.+ ++. ++++.. .++.|.++|+.+.+ .+.++..... -..+++.
T Consensus 315 ~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k---vv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ---DQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE---EEEECCCCSC-CCEEECC
T ss_pred CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc---EEEEEECCCC-CCEEEee
Confidence 2444444 455 566666 59999999999876 6666664433 3345443
No 258
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.60 E-value=5.8e-06 Score=76.85 Aligned_cols=200 Identities=12% Similarity=0.109 Sum_probs=119.7
Q ss_pred EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-C-C--CeEEEEE-
Q 013717 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-N-N--GLIYSVS- 229 (437)
Q Consensus 155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~--~~l~~~~- 229 (437)
+++...++.|.+.|+.+.+....+. ++ .......+++ . | +++++++
T Consensus 105 fVnd~~~~rVavIdl~t~~~~~ii~-ip----------------------------~g~~phg~~~~~~p~~~~v~~~~~ 155 (595)
T 1fwx_A 105 FMNDKANTRVARVRCDVMKCDAILE-IP----------------------------NAKGIHGLRPQKWPRSNYVFCNGE 155 (595)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE-CS----------------------------SCCSEEEEEECCSSBCSEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCceEeeEEe-CC----------------------------CCCCCcceeeeecCCCcEEEEecc
Confidence 5555667789999999988666442 32 2234556665 2 4 6666664
Q ss_pred -----------------CCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCC------------------
Q 013717 230 -----------------WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADR------------------ 273 (437)
Q Consensus 230 -----------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg------------------ 273 (437)
.++.+.++|..+.+...++.-.. .-..++++|+|+ +++.+.+.
T Consensus 156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~ 234 (595)
T 1fwx_A 156 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 234 (595)
T ss_dssp SCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred cccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEE
Confidence 24678999999998888876322 346677899988 55554332
Q ss_pred --------------------eEEEecCCCCccccee-eEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCcc
Q 013717 274 --------------------KIRVWAKPFNEKRHAL-IATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSAN 331 (437)
Q Consensus 274 --------------------~v~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~ 331 (437)
.|.+.|.+... ... +..+. -.....++.++|||+++++++ .+.+|.++|+.+.+.
T Consensus 235 V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~--~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~ 311 (595)
T 1fwx_A 235 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEA--SSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA 311 (595)
T ss_dssp EEEHHHHHHHHHHTCSEEETTEEEEECSGGG--CCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred EeeccceeEeccCCCeeEECcEEEEeCcccC--CceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccc
Confidence 24555544311 111 22222 223457899999999877765 588999999985321
Q ss_pred c--------eEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCC-------CCeeeeeeecCCCCC
Q 013717 332 H--------MVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSD-------GRFGCLAVLEGHTKP 388 (437)
Q Consensus 332 ~--------~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~ 388 (437)
. ........ -......++|+++ ..++.-.|++|.+||+... +....+.++..|-.+
T Consensus 312 ~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 312 VFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp HHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred ccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 0 00111111 1223455555544 4455667999999998761 112466666666543
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.60 E-value=2.5e-05 Score=74.36 Aligned_cols=202 Identities=12% Similarity=0.036 Sum_probs=110.8
Q ss_pred eCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCc----ccEEEEEEeCCeEEEEecCCeEEEEeCCCCccccccccc
Q 013717 107 HHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSS----GSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTL 181 (437)
Q Consensus 107 ~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 181 (437)
.+..++.++.+ .|.-+|..+++..=........... ..-..+++.++.++.++.|+.|..+|..+++........
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 46666666664 7888898886432222211000000 001233456778889999999999999999865443321
Q ss_pred CccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC---CC-eEEEEE------CCCcEEEEECCCcceEEEeecc
Q 013717 182 PTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN---NG-LIYSVS------WDKSLKIWRASDLRCLESIKAH 251 (437)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 251 (437)
..... +.....++. .-. .+ .++++. .+|.|..+|..+++.+......
T Consensus 147 ~~~~~---------------------~~~~~sP~v--~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~ 203 (582)
T 1flg_A 147 DHGAG---------------------YTMTGAPTI--VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFV 203 (582)
T ss_dssp CGGGT---------------------CBCCSCCEE--EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESS
T ss_pred CCCcC---------------------cccccCCEE--eCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCC
Confidence 10000 000111111 111 01 555554 3789999999999988765421
Q ss_pred cccE-----------------------------------------EEEEEecCCe-EEEEeC------------------
Q 013717 252 EDAV-----------------------------------------NAVAVSAGGT-VYTGSA------------------ 271 (437)
Q Consensus 252 ~~~v-----------------------------------------~~~~~~~~~~-l~~~~~------------------ 271 (437)
...+ ..+++.|+.. ++.+..
T Consensus 204 ~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~ 283 (582)
T 1flg_A 204 EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPH 283 (582)
T ss_dssp TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCST
T ss_pred ccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCccc
Confidence 1000 1234555544 555552
Q ss_pred --C----CeEEEecCCCCcccceeeEEeeCcc--------ccEEEEEEc-cCCC---EEEEEeCCCcEEEEECCCCccce
Q 013717 272 --D----RKIRVWAKPFNEKRHALIATLEKHK--------SAVNALALS-DDGT---VLFSGACDRSILVWDREDSANHM 333 (437)
Q Consensus 272 --d----g~v~iwd~~~~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~ 333 (437)
| +.|..+|..+++..+.. ....|. .++. +... .+|+ .++.++.+|.++++|.++++...
T Consensus 284 ~~d~~~~~~v~AlD~~TG~~~W~~--q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 360 (582)
T 1flg_A 284 DYDSLYTSGQVGVDPSSGEVKWFY--QHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQN 360 (582)
T ss_dssp TCCCTTCSEEEEECTTTCCEEEEE--ESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccCCcccceEEEEeCCCCCEEEEE--eCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEec
Confidence 2 57999988776543322 111121 2222 2222 4674 78889999999999999887654
Q ss_pred E
Q 013717 334 V 334 (437)
Q Consensus 334 ~ 334 (437)
.
T Consensus 361 ~ 361 (582)
T 1flg_A 361 A 361 (582)
T ss_dssp E
T ss_pred c
Confidence 3
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.59 E-value=6.2e-05 Score=66.11 Aligned_cols=249 Identities=14% Similarity=0.092 Sum_probs=135.2
Q ss_pred cEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 144 SVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 144 ~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
...++++.++. ++++..++.|..|+..+++.............. ...... ..........+.++++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~-------~~~~~~~~~~p~gi~~~ 88 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKA----FCENST-------DAEKRPLCGRTYDISYN 88 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHH----HHTTCC-------CGGGHHHHCCEEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEeccccccccc----cccccc-------chhccccCCCCceEEEc
Confidence 45667787543 888888899999988764322110000000000 000000 00000012346788887
Q ss_pred C--CeEEEEECCCcEEEEECCCcceEEEeec-----ccccEEEEEEec-CCeEEEEeC------------------CCeE
Q 013717 222 N--GLIYSVSWDKSLKIWRASDLRCLESIKA-----HEDAVNAVAVSA-GGTVYTGSA------------------DRKI 275 (437)
Q Consensus 222 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~l~~~~~------------------dg~v 275 (437)
+ ..|+.+...+.|..+|..+++. ..+.. .......+++.+ +|.+..+.. ++.|
T Consensus 89 ~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 89 LQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp TTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred CCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 4 6788787767788998776543 22211 123478899999 898555543 3678
Q ss_pred EEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCcc-ceEEeeeecccccceEEEEee-
Q 013717 276 RVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSAN-HMVVTGALRGHGKAILCLINV- 352 (437)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~- 352 (437)
..||..... . ..+.........++++|+|+.|+.+ ..++.|.+|++..... .........+ ...+..+
T Consensus 168 ~~~d~~~~~----~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g----P~gi~~d~ 238 (322)
T 2fp8_A 168 IKYDPSTKE----T-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN----PGNIKRNA 238 (322)
T ss_dssp EEEETTTTE----E-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS----EEEEEECT
T ss_pred EEEeCCCCE----E-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC----CCCeEECC
Confidence 888764332 1 1111122345679999999866655 5568999999875321 1111111222 3445554
Q ss_pred -CCEEEEEeC----------CCcEEEeeCCCCCCeeeeeeecCC----CCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717 353 -AGLLMSGSA----------DRTVRIWQRGSDGRFGCLAVLEGH----TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA 417 (437)
Q Consensus 353 -~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i 417 (437)
+++.++... .+.|..+|.. ++ .+..+... ...++.+++. ++ +++++...++.|..
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~---~~~~~~~~~g~~~~~~~~~~~~-~g-----~L~v~~~~~~~i~~ 308 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GN---ILEVIPLPPPFAGEHFEQIQEH-DG-----LLYIGTLFHGSVGI 308 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SC---EEEEEECCTTTTTSCCCEEEEE-TT-----EEEEECSSCSEEEE
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCC-CC---EEEEEECCCCCccccceEEEEe-CC-----EEEEeecCCCceEE
Confidence 444444333 4568888764 33 34444322 2456777663 33 36777777889999
Q ss_pred EeeccC
Q 013717 418 WQVSVS 423 (437)
Q Consensus 418 w~~~~~ 423 (437)
+++...
T Consensus 309 ~~~~~~ 314 (322)
T 2fp8_A 309 LVYDKK 314 (322)
T ss_dssp EEC---
T ss_pred Eecccc
Confidence 998654
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.56 E-value=7.5e-05 Score=65.57 Aligned_cols=241 Identities=12% Similarity=0.115 Sum_probs=134.9
Q ss_pred CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccC--------------CCCcccEEEEEEeC-C-eEEEEe
Q 013717 99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDN--------------DSSSGSVKSVTFCD-G-KIFTAH 159 (437)
Q Consensus 99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~--------------~~h~~~v~~l~~~~-~-~l~s~~ 159 (437)
....+++++ +++++++..+ .|..||..++........... ......+..|++.+ + .|+.+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 344667776 6767888777 999999887544332210000 00123578999985 4 477776
Q ss_pred cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC-------
Q 013717 160 QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW------- 230 (437)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~------- 230 (437)
..+.|..+|..+++.......... ........+++.+ ..++.+..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~--------------------------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~ 152 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDG--------------------------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDR 152 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETT--------------------------EECSCEEEEEECTTTCCEEEEESCSSCCTT
T ss_pred CCCCEEEEeCCCCEEEEecccCCC--------------------------CcccccceEEEecCCCEEEEECCccccccc
Confidence 666688888765432111110000 0112356677765 34444432
Q ss_pred -----------CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEE-eCCCeEEEecCCCCcc-cceeeEEeeCc
Q 013717 231 -----------DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTG-SADRKIRVWAKPFNEK-RHALIATLEKH 296 (437)
Q Consensus 231 -----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~-~~dg~v~iwd~~~~~~-~~~~~~~~~~~ 296 (437)
++.|..||..+++...... .......++++|++. ++++ ...+.|.+|++..... ....... .
T Consensus 153 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~ 228 (322)
T 2fp8_A 153 GVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---I 228 (322)
T ss_dssp CHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---C
T ss_pred ccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---C
Confidence 3678888887665433222 223456799999987 5554 5668999998864221 1112221 2
Q ss_pred cccEEEEEEccCCCEEEEEeC----------CCcEEEEECCCCccceEEeeeeccc-ccceEEEEeeCC-EEEEEeCCCc
Q 013717 297 KSAVNALALSDDGTVLFSGAC----------DRSILVWDREDSANHMVVTGALRGH-GKAILCLINVAG-LLMSGSADRT 364 (437)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-~l~~~~~dg~ 364 (437)
.+ ...+++.++|++.++... .+.|..+|.. ++....+. ...+. ...+..+...+. ++++....+.
T Consensus 229 ~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~-~~~g~~~~~~~~~~~~~g~L~v~~~~~~~ 305 (322)
T 2fp8_A 229 PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIP-LPPPFAGEHFEQIQEHDGLLYIGTLFHGS 305 (322)
T ss_dssp SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEE-CCTTTTTSCCCEEEEETTEEEEECSSCSE
T ss_pred CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEE-CCCCCccccceEEEEeCCEEEEeecCCCc
Confidence 23 788999999987666544 4678888864 33222221 11111 123444555555 4444446778
Q ss_pred EEEeeCCC
Q 013717 365 VRIWQRGS 372 (437)
Q Consensus 365 i~iwd~~~ 372 (437)
|.++++..
T Consensus 306 i~~~~~~~ 313 (322)
T 2fp8_A 306 VGILVYDK 313 (322)
T ss_dssp EEEEEC--
T ss_pred eEEEeccc
Confidence 99988764
No 262
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.51 E-value=0.00035 Score=59.35 Aligned_cols=193 Identities=13% Similarity=0.084 Sum_probs=116.6
Q ss_pred cEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeecccccEEEEEEecCC-e-EEEEeCCCeEEEecCCCCcccce
Q 013717 214 AVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-T-VYTGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~~~~~ 288 (437)
.+.++++++ +.|+.+. .++.|..++.........+.........+++++++ . +++-...+.|.++++..... .
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--~ 114 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--R 114 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--E
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--E
Confidence 467888876 5555554 56899999987665433333233568899999864 5 45555678999998763221 1
Q ss_pred eeEEeeCccccEEEEEEccCCCEEEEEeC---CCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEE-EEEeCC
Q 013717 289 LIATLEKHKSAVNALALSDDGTVLFSGAC---DRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLL-MSGSAD 362 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~d 362 (437)
. ...........++++|++..|+.+.. .+.|..+++.... ...+. .........+++++ +.| ++-...
T Consensus 115 ~--~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~---~~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 115 V--LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA---QDNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp E--EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE---CTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred E--EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE---ECCCCCCcEEEEcCCCCEEEEEECCC
Confidence 1 12222256789999997666655554 3688888886432 22221 11123345666653 444 455556
Q ss_pred CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 363 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
+.|.++|..... ....+.+ ......|+.. ++ .++++....+.|..++..+++
T Consensus 189 ~~I~~~~~~g~~---~~~~~~~-~~~P~gi~~d--~~----~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 189 HRAECLNPAQPG---RRKVLEG-LQYPFAVTSY--GK----NLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TEEEEEETTEEE---EEEEEEC-CCSEEEEEEE--TT----EEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEecCCCc---eEEEecC-CCCceEEEEe--CC----EEEEEECCCCeEEEEeCCCCC
Confidence 889999987533 2222222 2234566654 32 366666667899999987664
No 263
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.47 E-value=1.1e-05 Score=74.95 Aligned_cols=210 Identities=10% Similarity=0.041 Sum_probs=121.1
Q ss_pred eCCEEEEEecC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe--CCe--EEEEe------------------cCC
Q 013717 107 HHNFLYAASSH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DGK--IFTAH------------------QDC 162 (437)
Q Consensus 107 ~~~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~--l~s~~------------------~dg 162 (437)
.|++|+....+ .|.+.|+.+.+...+..+ .....+..+++. |+. +++++ .++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i----p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEI----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEEC----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeC----CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 37888887765 899999999654443344 233467788873 444 55553 346
Q ss_pred eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc---eeeecC-CCcEEEEEe-----------CCCeEEE
Q 013717 163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK---KLWIEH-GDAVTGLAV-----------NNGLIYS 227 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~v~~~~~-----------~~~~l~~ 227 (437)
.+.++|.++.+....+..- . ...............+..... ..+..- ......+.+ ..++...
T Consensus 176 ~vtvID~~t~~v~~qI~Vg-g-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVS-G-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEEETTTTEEEEEEEES-S-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred eEEEEECCCCeEEEEEEeC-C-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 7999999887654443321 1 112222222222222222111 000000 011111111 1122222
Q ss_pred EECCCcEEEEECCC--cce-EEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcc--------cceeeEEee
Q 013717 228 VSWDKSLKIWRASD--LRC-LESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEK--------RHALIATLE 294 (437)
Q Consensus 228 ~~~dg~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~ 294 (437)
+.|.+.|.++ ++. +..+.. .....++.++|||+ ++++..+.+|.++|+..... .........
T Consensus 254 ----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 254 ----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp ----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred ----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 5599999998 555 555543 34567899999999 55566789999999874310 111233332
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 013717 295 KHKSAVNALALSDDGTVLFSGACDRSILVWDRED 328 (437)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (437)
-......++|+|+|...++.-.|++|.+||+..
T Consensus 329 -vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 329 -LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp -CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred -CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 345688999999995455666799999999976
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.45 E-value=0.00066 Score=61.12 Aligned_cols=231 Identities=12% Similarity=0.059 Sum_probs=133.8
Q ss_pred CeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--CeE-EEEecCCeEEEEeCCCCccc
Q 013717 100 PIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GKI-FTAHQDCKIRVWQLTPTKHH 175 (437)
Q Consensus 100 ~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~~~dg~i~iwd~~~~~~~ 175 (437)
.-.|.+.. ..+|+.+..+.|+..++.......+.. ....+..++|.+ +.| ++-...+.|..++++.....
T Consensus 78 ~~~C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~------~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 78 RRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN------NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SSCEEECSSCCEEEEECBSCEEEECTTSCCCEEEEC------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred CCeECCccccceeEeecCccceeeccCCCcEEEEec------CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE
Confidence 34455555 456665655588889988754333322 234578999984 334 44456788999988765322
Q ss_pred ccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCcEEEEECCCcceEEEeeccc
Q 013717 176 KLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKSLKIWRASDLRCLESIKAHE 252 (437)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~ 252 (437)
.... ........+++++ +.|+ +-...+.|.+.++........+....
T Consensus 152 ~~~~------------------------------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l 201 (386)
T 3v65_B 152 EVVS------------------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL 201 (386)
T ss_dssp EEEC------------------------------SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSC
T ss_pred EEEe------------------------------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC
Confidence 1111 0112234566654 4444 44456788888876544333333334
Q ss_pred ccEEEEEEecCCe-E-EEEeCC-CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCC
Q 013717 253 DAVNAVAVSAGGT-V-YTGSAD-RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDRED 328 (437)
Q Consensus 253 ~~v~~~~~~~~~~-l-~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~ 328 (437)
.....+++.|.+. | ++-... +.|..+++.... ........-.....|+++|++..|+.+. ..+.|..+|+..
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG----RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC----cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 5678999998554 4 444444 788888775322 1111222344578999998766665554 467899999875
Q ss_pred CccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCC
Q 013717 329 SANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 329 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 374 (437)
.. ...+.. ........++..++ ++++-...+.|..++..+++
T Consensus 278 ~~-~~~~~~---~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 278 SH-RKAVIS---QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp CS-CEEEEC---SSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred Ce-eEEEEE---CCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence 43 222221 11223455555555 55555567789888866655
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.44 E-value=0.00075 Score=59.84 Aligned_cols=232 Identities=13% Similarity=0.074 Sum_probs=134.2
Q ss_pred CCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--CeEE-EEecCCeEEEEeCCCCcc
Q 013717 99 LPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GKIF-TAHQDCKIRVWQLTPTKH 174 (437)
Q Consensus 99 ~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~~~dg~i~iwd~~~~~~ 174 (437)
+..+|.+.. ..+|+.+....|+..++.......+.. ....+..++|++ +.|+ +-...+.|..++++....
T Consensus 34 d~~~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~------~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN------NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TSSCEEESSSCCEEEEECBSCEEEECTTSCCEEEEEC------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcccccccCceeEeecccceEEEeCCCCeeEEeec------CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence 344566555 455555555578888887753333221 234578999984 3344 445678898898876532
Q ss_pred cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCcEEEEECCCcceEEEeecc
Q 013717 175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKSLKIWRASDLRCLESIKAH 251 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (437)
..... ........+++++ +.|+ +-...+.|.+.++........+...
T Consensus 108 ~~~~~------------------------------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~ 157 (349)
T 3v64_C 108 EEVVS------------------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS 157 (349)
T ss_dssp EEEEC------------------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT
T ss_pred eEEEe------------------------------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC
Confidence 21111 1112335666664 4444 4445678999998655433333333
Q ss_pred cccEEEEEEecC-Ce-EEEEeCC-CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECC
Q 013717 252 EDAVNAVAVSAG-GT-VYTGSAD-RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDRE 327 (437)
Q Consensus 252 ~~~v~~~~~~~~-~~-l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 327 (437)
-.....++++|. +. +++-... +.|..++++.... .......-.....|+++|++..|+.+. ..+.|..+|+.
T Consensus 158 l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~----~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 158 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc----EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 456789999985 44 4444445 7888888764221 111122334678999998766665554 46789999987
Q ss_pred CCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCC
Q 013717 328 DSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 374 (437)
.... ..+.. ........++..++ ++++-...+.|..++..+++
T Consensus 234 G~~~-~~~~~---~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 234 GSHR-KAVIS---QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp SCSC-EEEEC---SSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCce-EEEEe---CCCCCceEEEEECCEEEEecCCCCeEEEEEccCCC
Confidence 5432 22221 11223345555555 45555567788888865555
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.39 E-value=0.0011 Score=59.65 Aligned_cols=194 Identities=11% Similarity=0.013 Sum_probs=116.4
Q ss_pred CcEEEEEeCC--CeEEEE-ECCCcEEEEECCCcceEEEeecccccEEEEEEecC-Ce-EEEEeCCCeEEEecCCCCcccc
Q 013717 213 DAVTGLAVNN--GLIYSV-SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG-GT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 213 ~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
..+..++|++ +.|+.. ...+.|..+++........+.........+++.+. +. +++-...+.|.++++....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--- 192 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 192 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---
Confidence 4577889885 555554 45688999998766544433333344567888874 45 4555667889998876432
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEEEEeC-C-CcEEEEECCCCccceEEeeeecccccceEEEEee--CC-EEEEEeCC
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLFSGAC-D-RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AG-LLMSGSAD 362 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d 362 (437)
....+.........++++|.+..|+.+.. . +.|..+++...... .+. .........++++ +. ++++-...
T Consensus 193 -~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~---~~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 193 -RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIA---DTHLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp -CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEE---CSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred -eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EEE---ECCCCCeeeEEEeCCCCEEEEEECCC
Confidence 11122233456789999997666655543 4 68888888654322 221 1112234556665 44 44444556
Q ss_pred CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 363 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
+.|..+|+..... ...+........+|++..+ .++++-...+.|..++..++
T Consensus 268 ~~I~~~d~dG~~~---~~~~~~~~~~P~giav~~~------~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 268 HVIERANLDGSHR---KAVISQGLPHPFAITVFED------SLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TEEEEECTTSCSC---EEEECSSCSSEEEEEEETT------EEEEEETTTTEEEEEETTTC
T ss_pred CEEEEEeCCCCee---EEEEECCCCCceEEEEECC------EEEEeeCCCCeEEEEECCCC
Confidence 7899999875431 2222333445678887332 36777777788888874444
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.33 E-value=8.2e-05 Score=72.31 Aligned_cols=267 Identities=10% Similarity=0.023 Sum_probs=135.1
Q ss_pred CCEEEEEecC------------eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CCe-EEEEe-cCCeEEEEeCCCC
Q 013717 108 HNFLYAASSH------------EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DGK-IFTAH-QDCKIRVWQLTPT 172 (437)
Q Consensus 108 ~~~l~s~~~d------------~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~-l~s~~-~dg~i~iwd~~~~ 172 (437)
++.++.|+.+ .+.+||..++++..+..+.. .+.....++++. ++. ++.|+ .+..+.+||..+.
T Consensus 198 g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~--~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~ 275 (656)
T 1k3i_A 198 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT--KHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD 275 (656)
T ss_dssp TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC--SCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC--CCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC
Confidence 6677776531 58899999987776655421 223333345555 344 66666 4568999998866
Q ss_pred cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-CCCeEEEEE-CC-----CcEEEEECCCcceE
Q 013717 173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-NNGLIYSVS-WD-----KSLKIWRASDLRCL 245 (437)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~-~d-----g~i~iwd~~~~~~~ 245 (437)
+.... ..++ ..........+ +.+.++.|+ .+ ..+.+||..+.+-.
T Consensus 276 ~W~~~-~~~~---------------------------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 276 SWIPG-PDMQ---------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEEEC-CCCS---------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ceeEC-CCCC---------------------------ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 43222 1111 01112233344 347777777 34 56999999876533
Q ss_pred EEe----ecccccEEEEEEecCCe-EEEEeCCC---------eEEEecCCCCcccceeeEEeeC------ccccEEEEEE
Q 013717 246 ESI----KAHEDAVNAVAVSAGGT-VYTGSADR---------KIRVWAKPFNEKRHALIATLEK------HKSAVNALAL 305 (437)
Q Consensus 246 ~~~----~~~~~~v~~~~~~~~~~-l~~~~~dg---------~v~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~ 305 (437)
..- ......-....+..++. ++.|+.+| .+..||...+... ........ ....-.++.|
T Consensus 328 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~-~~~~~~~~~~~~~~~~~~~~av~~ 406 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV-KSAGKRQSNRGVAPDAMCGNAVMY 406 (656)
T ss_dssp EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE-EEEEECEETTEECCCCBTCEEEEE
T ss_pred eCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee-ecCCccccccccCCCCCCCceEec
Confidence 320 00000000011223444 45555444 5677777644311 11111110 0112244444
Q ss_pred cc-CCCEEEEEeCCC-----------cEEEEECCCCccceEEeeeecccccceEEEE-eeCCEEEEEeCC----------
Q 013717 306 SD-DGTVLFSGACDR-----------SILVWDREDSANHMVVTGALRGHGKAILCLI-NVAGLLMSGSAD---------- 362 (437)
Q Consensus 306 ~~-~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~l~~~~~d---------- 362 (437)
.. ++++++.|+.++ .|.+||..+...................++. .++.+++.|+.+
T Consensus 407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence 43 677888887543 6778887764322111001111111223333 367788888754
Q ss_pred -CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717 363 -RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL 411 (437)
Q Consensus 363 -g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~ 411 (437)
..+.+||..+.+ +..+..+...........+.+++ ++++.||.
T Consensus 487 ~~~v~~ydp~t~~-W~~~~~~~~~R~~hs~a~ll~dg-----~v~v~GG~ 530 (656)
T 1k3i_A 487 VFTPEIYVPEQDT-FYKQNPNSIVRVYHSISLLLPDG-----RVFNGGGG 530 (656)
T ss_dssp CCCCEEEEGGGTE-EEECCCCSSCCCTTEEEEECTTS-----CEEEEECC
T ss_pred ccceEEEcCCCCc-eeecCCCCCccccccHhhcCCCc-----EEEecCCC
Confidence 468999987643 44443333222223334455666 37888875
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.32 E-value=0.0013 Score=57.41 Aligned_cols=223 Identities=15% Similarity=0.090 Sum_probs=129.3
Q ss_pred EEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--CeE-EEEecCCeEEEEeCCCC---cccccccccCc
Q 013717 110 FLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GKI-FTAHQDCKIRVWQLTPT---KHHKLKTTLPT 183 (437)
Q Consensus 110 ~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~~~dg~i~iwd~~~~---~~~~~~~~~~~ 183 (437)
+|+.+..+.|+..|+.+.....+ + .....+..++|++ +.| ++-...+.|..++++.. .....+
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~--~----~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~----- 71 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSL--I----PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV----- 71 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEE--E----CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-----
T ss_pred EEEEECCCeEEEEECCCcceEeh--h----cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-----
Confidence 45566666889999988543332 2 1345678999984 344 44455688999988752 110000
Q ss_pred cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-ECCCcEEEEECCCcceEEEeecccccEEEEEE
Q 013717 184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-SWDKSLKIWRASDLRCLESIKAHEDAVNAVAV 260 (437)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 260 (437)
+...-.....+++++ +.|+.+ ...+.|.++|+........+.........+++
T Consensus 72 ------------------------~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iav 127 (316)
T 1ijq_A 72 ------------------------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 127 (316)
T ss_dssp ------------------------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEE
T ss_pred ------------------------EeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEe
Confidence 001112345677763 445444 56788999998754433333333456789999
Q ss_pred ecC-CeEEEEeC-C-CeEEEecCCCCcccceeeEEe-eCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEE
Q 013717 261 SAG-GTVYTGSA-D-RKIRVWAKPFNEKRHALIATL-EKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVV 335 (437)
Q Consensus 261 ~~~-~~l~~~~~-d-g~v~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~ 335 (437)
.|. +.++.+.. . +.|..+++.... ...+ ...-.....+++++++..|+.+. ..+.|..+|+.... ...+
T Consensus 128 dp~~g~ly~~d~~~~~~I~~~~~dG~~-----~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~ 201 (316)
T 1ijq_A 128 DPVHGFMYWTDWGTPAKIKKGGLNGVD-----IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTI 201 (316)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCC-----EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE
T ss_pred CCCCCEEEEEccCCCCeEEEEcCCCCC-----eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEE
Confidence 985 45444443 3 788888775322 1112 22345678999999777666555 46789999987532 2222
Q ss_pred eeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCC
Q 013717 336 TGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 336 ~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 374 (437)
.. ..........++..++ ++++-...+.|..++..+++
T Consensus 202 ~~-~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 202 LE-DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EE-CTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred ee-cCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 22 1111223355555656 45555567789999876665
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.30 E-value=0.00012 Score=71.19 Aligned_cols=255 Identities=13% Similarity=0.139 Sum_probs=126.8
Q ss_pred eeEEecCCCc-ceeeeec--CccCCeEEEEee--CCEEEEEecC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe
Q 013717 79 TINFSSASHL-CINSVQL--GHKLPIGCIAVH--HNFLYAASSH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC 151 (437)
Q Consensus 79 ~i~~~~~~~~-~~~~~~~--~h~~~V~~l~~~--~~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 151 (437)
.+.+|+.... ...+..+ .+.....++++. +.+++.|+.+ .+.+||..+..|..+..+. ..... .+++..
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~---~~R~~-~s~~~~ 295 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ---VARGY-QSSATM 295 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS---SCCSS-CEEEEC
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCC---ccccc-cceEEe
Confidence 4566766432 2333333 233333345543 8888888854 8999999998888776542 11222 233444
Q ss_pred -CCe-EEEEe-cC-----CeEEEEeCCCCcccccc----cccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717 152 -DGK-IFTAH-QD-----CKIRVWQLTPTKHHKLK----TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA 219 (437)
Q Consensus 152 -~~~-l~s~~-~d-----g~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (437)
++. ++.|+ .+ ..+.+||..+.+..... ..+...... ... .+...+..+.
T Consensus 296 ~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~--~~~-----------------~~~~~iyv~G 356 (656)
T 1k3i_A 296 SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ--GLY-----------------RSDNHAWLFG 356 (656)
T ss_dssp TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT--GGG-----------------TTTCSCCEEE
T ss_pred cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc--cee-----------------ecCCceEEEE
Confidence 455 66666 34 56899999876532221 000000000 000 0111111111
Q ss_pred eCCCeEEEEECCCcEEEEECCCcceEEEeeccc---------ccEEEEEEec-CCe-EEEEeCCC-----------eEEE
Q 013717 220 VNNGLIYSVSWDKSLKIWRASDLRCLESIKAHE---------DAVNAVAVSA-GGT-VYTGSADR-----------KIRV 277 (437)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~-~~~-l~~~~~dg-----------~v~i 277 (437)
.....++..+....+..||..+........... ..-.++.+.. +++ ++.|+.++ .|.+
T Consensus 357 g~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~ 436 (656)
T 1k3i_A 357 WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITL 436 (656)
T ss_dssp CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEEC
T ss_pred CCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEc
Confidence 111111112233467888988766443332111 1234444443 667 77777532 6778
Q ss_pred ecCCCCcccceeeE--EeeCccccEEEEEEccCCCEEEEEeCC-----------CcEEEEECCCCccceEEeeeeccccc
Q 013717 278 WAKPFNEKRHALIA--TLEKHKSAVNALALSDDGTVLFSGACD-----------RSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 278 wd~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
||...+. +..+. .+. ....-.+++..|+|++++.|+.+ ..+.+||..+.+ +...........
T Consensus 437 yd~~~~~--W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~--W~~~~~~~~~R~ 511 (656)
T 1k3i_A 437 GEPGTSP--NTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT--FYKQNPNSIVRV 511 (656)
T ss_dssp CSTTSCC--EEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE--EEECCCCSSCCC
T ss_pred CCCCCCC--eeEEccCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc--eeecCCCCCccc
Confidence 8775432 22221 111 11122345667899999998864 468999987643 222221111111
Q ss_pred c--eEEEEeeCCEEEEEeC
Q 013717 345 A--ILCLINVAGLLMSGSA 361 (437)
Q Consensus 345 ~--i~~~~~~~~~l~~~~~ 361 (437)
. ...+..++.+++.|+.
T Consensus 512 ~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 512 YHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TTEEEEECTTSCEEEEECC
T ss_pred cccHhhcCCCcEEEecCCC
Confidence 1 1222346778888875
No 270
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.29 E-value=0.00082 Score=58.36 Aligned_cols=234 Identities=9% Similarity=0.112 Sum_probs=122.1
Q ss_pred EEEEEec--C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC----CeEEEEeCCCCccccccccc
Q 013717 110 FLYAASS--H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD----CKIRVWQLTPTKHHKLKTTL 181 (437)
Q Consensus 110 ~l~s~~~--d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d----g~i~iwd~~~~~~~~~~~~~ 181 (437)
+++.|+. . .+.+||..++++..+..+... ... .+++..++. ++.|+.+ ..+.+||..+.+-... ..+
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~-~~~ 88 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK---RRD-AACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSK-LGP 88 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCC---CBS-CEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEE-ECC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcc---cce-eEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEEC-CCC
Confidence 4444543 2 899999999888877665321 112 222334555 6666654 5688888877653222 111
Q ss_pred CccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC------CcEEEEECCCcceEEE--eecccc
Q 013717 182 PTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD------KSLKIWRASDLRCLES--IKAHED 253 (437)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~ 253 (437)
+. .......+.+...+++.|+.+ ..+.+||..+.+-... +.....
T Consensus 89 p~---------------------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 141 (306)
T 3ii7_A 89 PT---------------------------PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC 141 (306)
T ss_dssp SS---------------------------CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred Cc---------------------------cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc
Confidence 10 111122333444666677654 4588999887653322 111111
Q ss_pred cEEEEEEecCCe-EEEEeC---------CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----
Q 013717 254 AVNAVAVSAGGT-VYTGSA---------DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD----- 318 (437)
Q Consensus 254 ~v~~~~~~~~~~-l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----- 318 (437)
...++ . -+++ ++.|+. -..+.+||+.++ .+..+..+......-..+.+ ++++++.|+.+
T Consensus 142 ~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~ 215 (306)
T 3ii7_A 142 SHGMV-E-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGL 215 (306)
T ss_dssp SCEEE-E-ETTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEB
T ss_pred eeEEE-E-ECCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCC
Confidence 11222 2 2566 555553 345788887654 33333222211111222222 56677777654
Q ss_pred CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCC-----CcEEEeeCCCCCCeeeeeeecC
Q 013717 319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSAD-----RTVRIWQRGSDGRFGCLAVLEG 384 (437)
Q Consensus 319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~ 384 (437)
..+.+||+.+.+ +..............++...+.+++.|+.+ ..+.+||..+.+ +..+..+..
T Consensus 216 ~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~ 283 (306)
T 3ii7_A 216 DNVEYYDIKLNE--WKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK-WVANSKVRA 283 (306)
T ss_dssp CCEEEEETTTTE--EEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE-EEEEEEEEC
T ss_pred ceEEEeeCCCCc--EEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe-EEeCCCccc
Confidence 468899987653 222222222222233444455577777754 468889988654 555554443
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.27 E-value=0.0019 Score=57.19 Aligned_cols=194 Identities=11% Similarity=0.007 Sum_probs=115.7
Q ss_pred CcEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeecccccEEEEEEecC-Ce-EEEEeCCCeEEEecCCCCcccc
Q 013717 213 DAVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG-GT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 213 ~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
..+..++|++ +.|+... ..+.|..+++........+.........+++.+. +. +++-...+.|.++++....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 149 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 149 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence 3577888885 5555554 5688999998766544433333345678888874 45 4555667899999876432
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEEEEe-CC-CcEEEEECCCCccceEEeeeecccccceEEEEee--CCEE-EEEeCC
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLFSGA-CD-RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLL-MSGSAD 362 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d 362 (437)
....+.........++++|.+..|+... .+ +.|..+++..... ..+. .........++++ +..| ++-...
T Consensus 150 -~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~---~~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 150 -RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIA---DTHLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp -CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESC---CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred -eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEE---ECCCCCcceEEEeCCCCEEEEEECCC
Confidence 1112223345678999999665555444 44 7898888865322 1111 1122334566665 3444 444556
Q ss_pred CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 363 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
+.|..+|+..... ...+........+|++.. + .++++-...+.|...+-.++
T Consensus 225 ~~I~~~~~dG~~~---~~~~~~~~~~P~giav~~-~-----~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 225 HVIERANLDGSHR---KAVISQGLPHPFAITVFE-D-----SLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp TEEEEEETTSCSC---EEEECSSCSSEEEEEEET-T-----EEEEEETTTTEEEEEETTTC
T ss_pred CEEEEEeCCCCce---EEEEeCCCCCceEEEEEC-C-----EEEEecCCCCeEEEEEccCC
Confidence 7899999875432 222223344567788733 2 26666667778887774333
No 272
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.24 E-value=0.0021 Score=56.34 Aligned_cols=231 Identities=9% Similarity=0.028 Sum_probs=121.9
Q ss_pred cccEEEEEEeCC-eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717 142 SGSVKSVTFCDG-KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV 220 (437)
Q Consensus 142 ~~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (437)
...+.+|.|.++ .++.++.+|.| +...+.++......... ......+.++.+
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~--------------------------~~~~~~~~~i~~ 87 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVL--------------------------DHSDYRFNSVSF 87 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCC--------------------------SCCCCEEEEEEE
T ss_pred CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCC--------------------------CCCCccEEEEEe
Confidence 457999999744 44446677765 33344444322221100 012346778888
Q ss_pred CCCeEEEEECCCcEEEEECCCcceEEEee---cccccEEEEEEecCCeEEEEeCCCeE-EEecCCCCcccceeeEEeeCc
Q 013717 221 NNGLIYSVSWDKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGGTVYTGSADRKI-RVWAKPFNEKRHALIATLEKH 296 (437)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~dg~v-~iwd~~~~~~~~~~~~~~~~~ 296 (437)
.++.++.++.+|.|.. ....++.-.... .....+..+.+.+++.++.++.+|.| +-.| ....++.+. ...
T Consensus 88 ~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~D---gG~tW~~~~--~~~ 161 (327)
T 2xbg_A 88 QGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKD---SGKNWQALV--QEA 161 (327)
T ss_dssp ETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESS---TTSSEEEEE--CSC
T ss_pred cCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcC---CCCCCEEee--cCC
Confidence 7755556666775544 223333322222 12345778888777885555556654 3333 333444332 234
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCC
Q 013717 297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGR 375 (437)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 375 (437)
...+..+++.+++.+++++. +|.++.-+-..+. ...... ......+..+.+.++ .++.++.+|.+++.+...++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~-tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQT-AWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp CCCEEEEEECTTSCEEEEET-TSSEEEEECTTCS-SCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEE
T ss_pred CcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCC-ceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCe
Confidence 56788999999988877664 4555443211122 222221 223445566666543 455666788887764332332
Q ss_pred eeeeeee-cCCCCCeeEEEEEccCCCCceEEEEEecCCCcE
Q 013717 376 FGCLAVL-EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI 415 (437)
Q Consensus 376 ~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i 415 (437)
+..+..- ..+...+.++++.+++. ++.++.+|.|
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~------~~~~g~~g~i 272 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNE------VWLAGGAGAL 272 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSC------EEEEESTTCE
T ss_pred eEeccCCcccCCcceEEEEecCCCE------EEEEeCCCeE
Confidence 3222211 11234588898887542 4444557776
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.23 E-value=0.0027 Score=57.35 Aligned_cols=247 Identities=13% Similarity=0.075 Sum_probs=142.2
Q ss_pred CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--CeEE-EEecCCeEEEEeCCCCcccccccccCcc
Q 013717 108 HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GKIF-TAHQDCKIRVWQLTPTKHHKLKTTLPTV 184 (437)
Q Consensus 108 ~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (437)
..+|+.+....|+..++.......+. .....+..|+|++ +.|+ +-...+.|+.++++.........
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~------~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~----- 151 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLI------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD----- 151 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEE------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCE-----
T ss_pred cceeEEeccceeEEEccCCcceeEec------cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcce-----
Confidence 45666666668999999875433332 2456788999984 3444 44456888888886532100000
Q ss_pred ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-ECCCcEEEEECCCcceEEEeecccccEEEEEEe
Q 013717 185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS 261 (437)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 261 (437)
.+..........++++. +.|+.+ ...+.|.+.++........+.........|++.
T Consensus 152 ---------------------~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavd 210 (400)
T 3p5b_L 152 ---------------------TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVD 210 (400)
T ss_dssp ---------------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEE
T ss_pred ---------------------EEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEe
Confidence 00111234566777765 444444 457889999987655444444344567899999
Q ss_pred cC-CeEEEEe-C-CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEEee
Q 013717 262 AG-GTVYTGS-A-DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVVTG 337 (437)
Q Consensus 262 ~~-~~l~~~~-~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 337 (437)
|. +.|+... . .+.|...++..... .......-.....|++++++..|+.+. ..+.|..+|+..... ..+..
T Consensus 211 p~~g~ly~td~~~~~~I~~~~~dG~~~----~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~ 285 (400)
T 3p5b_L 211 PVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILE 285 (400)
T ss_dssp TTTTEEEEEECSSSCCEEEEETTSCSC----EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEE
T ss_pred cccCeEEEEeCCCCCEEEEEeCCCCcc----EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEe
Confidence 85 4554443 2 47888888764321 111222335688999998777776664 467899999875432 22222
Q ss_pred eecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE
Q 013717 338 ALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV 395 (437)
Q Consensus 338 ~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 395 (437)
..........++..++ ++++-...+.|..+|..+++. +..+........+|...
T Consensus 286 -~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~---~~~i~~~~~~p~~i~v~ 340 (400)
T 3p5b_L 286 -DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD---VNLLAENLLSPEDMVLF 340 (400)
T ss_dssp -CSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCC---CEEEECSCSCEEEEEEE
T ss_pred -CCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCc---eEEEecCCCCCceEEEE
Confidence 1112233456666666 555666678899999766662 33333333334455443
No 274
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.22 E-value=0.0022 Score=55.84 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=129.8
Q ss_pred EEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--Ce-EEEEecCCeEEEEeCCCCcccccccccCcccc
Q 013717 110 FLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVND 186 (437)
Q Consensus 110 ~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 186 (437)
+|+.+....|+..+++.........+ .....+.++.|.+ +. +++-...+.|..++.+.........
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~----~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~------- 74 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVV----GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV------- 74 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEE----EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE-------
T ss_pred EEEEEccCeEEEEECCCCceEEEEEe----cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE-------
Confidence 44444444889999987531111111 1234567888884 34 4455567888888887653111000
Q ss_pred ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCcEEEEECCCcceEEEeecccccEEEEEEecC
Q 013717 187 RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG 263 (437)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (437)
...-.....+++++ +.|+ +-...+.|.++++........+.........+++.|.
T Consensus 75 ----------------------~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~ 132 (318)
T 3sov_A 75 ----------------------VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS 132 (318)
T ss_dssp ----------------------EECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG
T ss_pred ----------------------cCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC
Confidence 01122345666664 4444 4445678999998654333333334456789999985
Q ss_pred -CeEEEEe--CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEEeeee
Q 013717 264 -GTVYTGS--ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVVTGAL 339 (437)
Q Consensus 264 -~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~ 339 (437)
+.|+... ..+.|..++++.... . ......-.....|++++++..|+.+. ..+.|..+|+.... ...+..
T Consensus 133 ~g~ly~td~~~~~~I~r~~~dG~~~--~--~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~-- 205 (318)
T 3sov_A 133 SGFMYWTDWGEVPKIERAGMDGSSR--F--IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVK-- 205 (318)
T ss_dssp GTEEEEEECSSSCEEEEEETTSCSC--E--EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC--
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCe--E--EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEec--
Confidence 5555444 357888887753221 1 11122334678999999766666554 46789999987533 222221
Q ss_pred cccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCC
Q 013717 340 RGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 340 ~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 374 (437)
+.......++..++ ++++-...+.|..++..+++
T Consensus 206 -~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 206 -GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp -SCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred -CCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence 12333455666666 55555567889999987766
No 275
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.21 E-value=0.0078 Score=61.89 Aligned_cols=73 Identities=10% Similarity=0.044 Sum_probs=50.5
Q ss_pred ccCCeEEEEeeCCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--------CeEEEEec-CCeEEEE
Q 013717 97 HKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--------GKIFTAHQ-DCKIRVW 167 (437)
Q Consensus 97 h~~~V~~l~~~~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------~~l~s~~~-dg~i~iw 167 (437)
....|.+.+.++.+++.++.+.+.+++++.+........ .-...|.|+++.+ +.++.|.. |++|+|+
T Consensus 512 ~~~~I~~As~n~~~vvva~g~~l~~fel~~~~L~~~~~~----~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~ 587 (1158)
T 3ei3_A 512 QAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHT----EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 587 (1158)
T ss_dssp TCCCCCEEEECSSEEEEEETTEEEEEEEETTEEEEEEEE----ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEeCCCEEEEEECCEEEEEEeeCCceeeeccc----CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEE
Confidence 345677777777777777644888888876544443332 2356799999873 23777886 9999999
Q ss_pred eCCCCc
Q 013717 168 QLTPTK 173 (437)
Q Consensus 168 d~~~~~ 173 (437)
++.+.+
T Consensus 588 sL~~l~ 593 (1158)
T 3ei3_A 588 KLPSFE 593 (1158)
T ss_dssp ETTTCC
T ss_pred ECCCCC
Confidence 998644
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.21 E-value=0.0024 Score=55.68 Aligned_cols=197 Identities=11% Similarity=0.001 Sum_probs=114.4
Q ss_pred CcEEEEEeCC--CeEEEEE-CCCcEEEEECCC----cceEEEeecccccEEEEEEec-CCeE-EEEeCCCeEEEecCCCC
Q 013717 213 DAVTGLAVNN--GLIYSVS-WDKSLKIWRASD----LRCLESIKAHEDAVNAVAVSA-GGTV-YTGSADRKIRVWAKPFN 283 (437)
Q Consensus 213 ~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~~l-~~~~~dg~v~iwd~~~~ 283 (437)
....+++|++ +.|+.+. .++.|..+++.. ......+...-.....+++.+ .+.| ++-...+.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4567888876 5555554 568899999875 222222222224567889886 4454 55567889999987632
Q ss_pred cccceeeEEeeCccccEEEEEEccCCCEEEEEeCC--CcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEE-E
Q 013717 284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACD--RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLM-S 358 (437)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~-~ 358 (437)
. ..............++++|.+..|+.+... +.|..+++.... ...+. ...-.....++++ +..|+ +
T Consensus 110 ~----~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~---~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 110 K----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV---TENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp S----EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEE---CSSCSCEEEEEEETTTTEEEEE
T ss_pred c----eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEE---ECCCCCceEEEEeccCCEEEEE
Confidence 2 111222234567899999966666555443 688888886432 22221 1122344566666 44444 4
Q ss_pred EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 359 GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 359 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
-...+.|..+|+..... ..+...........+|++.. + .++++-...+.|..++..+++
T Consensus 182 D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~~-~-----~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-D-----KVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp ETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET-T-----EEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEEC-C-----EEEEEECCCCeEEEEeCCCCc
Confidence 45567899999975332 22222222233456777753 2 367777777888888865554
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=0.0014 Score=59.94 Aligned_cols=234 Identities=10% Similarity=0.088 Sum_probs=128.2
Q ss_pred ccEEEEEEeC--Ce-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717 143 GSVKSVTFCD--GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA 219 (437)
Q Consensus 143 ~~v~~l~~~~--~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (437)
.....|++++ +. |+.+...+.|+.+|++.+...... ........++
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-------------------------------~~~~~P~~ia 185 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-------------------------------SGLSKVRTIC 185 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-------------------------------CCCSCEEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-------------------------------cCCCCcceEE
Confidence 3567888886 23 666666588888888765432211 1334577888
Q ss_pred eCC--CeEEEEECC-C----cEEEEECCCcceE--EEeecccccEEEEEEec-CCeEE-EEeCCCeEEEecCCCCcccce
Q 013717 220 VNN--GLIYSVSWD-K----SLKIWRASDLRCL--ESIKAHEDAVNAVAVSA-GGTVY-TGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 220 ~~~--~~l~~~~~d-g----~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~l~-~~~~dg~v~iwd~~~~~~~~~ 288 (437)
+++ +.|+.+... + .+..++. .+... ..+. .......++++| ++.|+ +-..++.|..++...... .
T Consensus 186 ~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~--~ 261 (430)
T 3tc9_A 186 WTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET--T 261 (430)
T ss_dssp ECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE--E
T ss_pred EeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE--E
Confidence 887 546665542 2 2333443 33222 2232 233456788999 67754 445678999998764321 1
Q ss_pred eeEEeeCccccEEEEEEccCCCEEEE-EeCCCcEEEEECCCCcc----ceEEeeee--ccc---------ccceE-EEEe
Q 013717 289 LIATLEKHKSAVNALALSDDGTVLFS-GACDRSILVWDREDSAN----HMVVTGAL--RGH---------GKAIL-CLIN 351 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~----~~~~~~~~--~~~---------~~~i~-~~~~ 351 (437)
.+... ........++|+|+|++|+. -...+.|..++...... ...+.... .+. -.... .+..
T Consensus 262 ~~~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v 340 (430)
T 3tc9_A 262 PLFTI-QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFV 340 (430)
T ss_dssp EEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEE
T ss_pred EEEEc-CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEE
Confidence 11111 12245789999999995544 45678899988753211 11121110 000 00111 2332
Q ss_pred e----------CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC------------------CCCeeEEEEEccCCCCce
Q 013717 352 V----------AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH------------------TKPVKSLTAVTEEGQNGV 403 (437)
Q Consensus 352 ~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h------------------~~~v~~l~~~~~~~~~~~ 403 (437)
. +.++++=...+.|+.++.. +. +.++.+. -..-..|++.++++
T Consensus 341 ~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G~----v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g---- 411 (430)
T 3tc9_A 341 KNPAYKGSSDEYDFYFCDRENHCIRILTPQ-GR----VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERE---- 411 (430)
T ss_dssp ECGGGTTSSCCEEEEEEEGGGTEEEEECTT-SE----EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTT----
T ss_pred ccccccccCCCCeEEEEECCCcEEEEECCC-Cc----EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCC----
Confidence 1 2344444556778888733 22 2222111 12578999998533
Q ss_pred EEEEEecCCCcEEEEeec
Q 013717 404 VSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 404 ~~l~s~~~dg~i~iw~~~ 421 (437)
.++++-..+..|+.++++
T Consensus 412 ~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 412 CFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEEEGGGTEEEEEEEC
T ss_pred EEEEEECCCCeEEEEccC
Confidence 366666667888888765
No 278
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.16 E-value=0.01 Score=61.01 Aligned_cols=176 Identities=12% Similarity=0.147 Sum_probs=109.1
Q ss_pred cEEEEECCCcceEEEee-cccccEEEEEE---ecCC-e-EEEEe----------CCCeEEEecCCCCcccceeeEEeeCc
Q 013717 233 SLKIWRASDLRCLESIK-AHEDAVNAVAV---SAGG-T-VYTGS----------ADRKIRVWAKPFNEKRHALIATLEKH 296 (437)
Q Consensus 233 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~---~~~~-~-l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (437)
.|++.|..+.+.+..+. .....+.+++. ..+. . +++|+ ..|.|.+|++.. ...+.+.... .
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~--~kL~lv~~~~-v 884 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD--GKLQTVAEKE-V 884 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET--TEEEEEEEEE-E
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC--CEEEEEEEEE-c
Confidence 46777777777666554 23344555553 2222 2 77776 358899998862 2333333332 4
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCe
Q 013717 297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRF 376 (437)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 376 (437)
++++++++-. +| +|++|- ..+|++|++...+... .......+ ..+..+...+++++.|..-..|.++..+...
T Consensus 885 ~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~-~~~~~~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~-- 957 (1158)
T 3ei3_A 885 KGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELR-TECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAYKPME-- 957 (1158)
T ss_dssp SSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEE-EEEEECCC-SCEEEEEEETTEEEEEESSBCEEEEEEETTT--
T ss_pred CCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEE-EEeecccc-EEEEEEeccCCEEEEEEhhheEEEEEEEcCC--
Confidence 6788888855 45 455443 4789999997654222 21111111 1234666778999999988888876654322
Q ss_pred eeeeee--cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 377 GCLAVL--EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 377 ~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
..+..+ .-+...++++.+..++ .++.+..+|.|.+.+.....
T Consensus 958 ~~L~~~a~D~~~~~vta~~~ld~~------t~l~aD~~gNl~vl~~~~~~ 1001 (1158)
T 3ei3_A 958 GNFEEIARDFNPNWMSAVEILDDD------NFLGAENAFNLFVCQKDSAA 1001 (1158)
T ss_dssp TEEEEEEECCSCBCEEEEEEEETT------EEEEEETTSEEEEEEECTTC
T ss_pred CeEEEEEeecccccEEEEEEEccC------cEEEEcCCCcEEEEecCCCC
Confidence 122222 2345678999998765 68889999999999887643
No 279
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.15 E-value=0.0014 Score=56.64 Aligned_cols=222 Identities=9% Similarity=0.151 Sum_probs=113.7
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC-----CeEEEEeCCCCcc--cccccccCcccccee
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD-----CKIRVWQLTPTKH--HKLKTTLPTVNDRLL 189 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d-----g~i~iwd~~~~~~--~~~~~~~~~~~~~~~ 189 (437)
.+.+||..+.++..+..+.. .... .+++..++. ++.|+.+ ..+.+||..+.+. ...+..++.
T Consensus 32 ~~~~~d~~~~~W~~~~~~p~---~r~~-~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~------ 101 (301)
T 2vpj_A 32 VVEKYDPKTQEWSFLPSITR---KRRY-VASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV------ 101 (301)
T ss_dssp CEEEEETTTTEEEECCCCSS---CCBS-CEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS------
T ss_pred EEEEEcCCCCeEEeCCCCCh---hhcc-ccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC------
Confidence 78999999988877765422 1111 223334555 6666654 4588888877651 111111110
Q ss_pred eecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC-----CcEEEEECCCcceEE--EeecccccEEEEEEec
Q 013717 190 RFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD-----KSLKIWRASDLRCLE--SIKAHEDAVNAVAVSA 262 (437)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~ 262 (437)
.......+.+....++.|+.+ ..+.+||..+.+-.. .+........++. -
T Consensus 102 ---------------------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~ 158 (301)
T 2vpj_A 102 ---------------------RRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--A 158 (301)
T ss_dssp ---------------------CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--E
T ss_pred ---------------------CccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--E
Confidence 111112233344566666543 358899987765332 2221111122222 2
Q ss_pred CCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----CcEEEEECCCCcc
Q 013717 263 GGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-----RSILVWDREDSAN 331 (437)
Q Consensus 263 ~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~ 331 (437)
+++ ++.|+.+ ..+.+||+.++ .+..+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 666 6666654 45888887543 33333222211112222222 56777777664 4689999987542
Q ss_pred ceEEeeeecccccceEEEEeeCCEEEEEeCC-----CcEEEeeCCCCCCeeee
Q 013717 332 HMVVTGALRGHGKAILCLINVAGLLMSGSAD-----RTVRIWQRGSDGRFGCL 379 (437)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~ 379 (437)
..............++...+.+++.|+.+ ..+.+||.++.+ +..+
T Consensus 235 --~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~ 284 (301)
T 2vpj_A 235 --TTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS-WEVV 284 (301)
T ss_dssp --EEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE-EEEE
T ss_pred --EECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe-EEEc
Confidence 22222222222223444455577777765 357788887643 4433
No 280
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.12 E-value=0.00049 Score=67.91 Aligned_cols=193 Identities=13% Similarity=0.121 Sum_probs=109.0
Q ss_pred cEEEEEeC-C--CeEEEEE-CCC----cEEEEECCCc-ceEEE-eecccccEEEEEEecCCe-EEEEeCC-----CeEEE
Q 013717 214 AVTGLAVN-N--GLIYSVS-WDK----SLKIWRASDL-RCLES-IKAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRV 277 (437)
Q Consensus 214 ~v~~~~~~-~--~~l~~~~-~dg----~i~iwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~i 277 (437)
.+....|+ | ++|+.+. .+| .|+++|+.++ +.+.. +. .....++|+||++ |+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57788999 7 5566443 333 4999999998 63211 11 1234688999997 6666654 35777
Q ss_pred ecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC---CCcEEEEECCCCccce--EEeeeecccccceEEEE-e
Q 013717 278 WAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC---DRSILVWDREDSANHM--VVTGALRGHGKAILCLI-N 351 (437)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~--~~~~~~~~~~~~i~~~~-~ 351 (437)
+++.+.......+... ........+.|+|||++|+.... ...|+++|+.++.... ... ..........+. .
T Consensus 252 ~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l--~~~~~~~~~s~~~~ 328 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV--RPREKGVRYDVQMH 328 (751)
T ss_dssp EETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES--SCCCTTCCEEEEEE
T ss_pred EECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe--ecCCCCceEEEeee
Confidence 8776543222222221 22334668899999998887653 4568889998753222 111 122334445555 3
Q ss_pred eCCEEE-EEeCC--C--cEEEeeCCCCCCeeeeee-ecCCCC--CeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 352 VAGLLM-SGSAD--R--TVRIWQRGSDGRFGCLAV-LEGHTK--PVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 352 ~~~~l~-~~~~d--g--~i~iwd~~~~~~~~~~~~-~~~h~~--~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
.++.|+ ....+ + .|..+++.+... ... +..|.. .+..+.+. ++ .++++...||..++|-++
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~---~~~~li~~~~~~~l~~~~~~--~~----~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQPSD---WSHVLVDHSEDVFMESIAVR--SN----YLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTSTTC---CCCEEECCCSSEEEEEEEEC--SS----EEEEEEEETTEEEEEEEE
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCCccc---ceeeEECCCCCcEEEEEEEE--CC----EEEEEEEeCCEEEEEEEe
Confidence 355444 44333 2 566667654221 122 223333 34455443 33 478888888876665443
No 281
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.07 E-value=0.0035 Score=52.28 Aligned_cols=200 Identities=11% Similarity=0.079 Sum_probs=123.0
Q ss_pred ecCCCcEEEEEeCC--C-eEEEEECCCcEEEEECCCcceEEEeec-ccccEEEEEEecCCeE-EEEeCCCeEEEecCCCC
Q 013717 209 IEHGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGTV-YTGSADRKIRVWAKPFN 283 (437)
Q Consensus 209 ~~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~l-~~~~~dg~v~iwd~~~~ 283 (437)
.+-...+..+++++ + ++++...++.|...|.. ++.+..+.- .......|++.+++.+ ++.-.++.+.++++...
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 34556799999997 4 55557788999999997 888887752 2356888999888885 44446788999987654
Q ss_pred cccceeeEEee------CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCC--ccceEEeee--e--cccccceEEEEe
Q 013717 284 EKRHALIATLE------KHKSAVNALALSDDGTVLFSGACDRSILVWDREDS--ANHMVVTGA--L--RGHGKAILCLIN 351 (437)
Q Consensus 284 ~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~--~--~~~~~~i~~~~~ 351 (437)
.. ...+.... ..+.....++++|+++.|+++.+.....+|.+... ......... + ..+.....++++
T Consensus 102 ~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 102 SE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp CC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred Ce-eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 42 11112221 23445689999999987777776655566655410 011111110 0 012234566777
Q ss_pred eCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeec-CC------CCCeeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717 352 VAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLE-GH------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418 (437)
Q Consensus 352 ~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~h------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw 418 (437)
++. +++.......+.++|... + ......+. +. ...-..|+|.+++. |+..++-+.++.+
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~g-~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~------lyIvsE~n~~y~f 249 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLVG-E-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN------IYIVSEPNRFYRF 249 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTC-C-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC------EEEEETTTEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEEcCCC-C-EEEEEEcCCccCCcccccCCCCeeEECCCCC------EEEEcCCceEEEE
Confidence 755 677777788899999774 3 22333333 21 12568999999884 3334555544444
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.03 E-value=0.007 Score=54.66 Aligned_cols=199 Identities=11% Similarity=-0.029 Sum_probs=118.0
Q ss_pred CCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCCc----ceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCC
Q 013717 211 HGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASDL----RCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKP 281 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~ 281 (437)
....+..++|++ +.|+... ..+.|+.+++... .....+.........+++.+ .+. +++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 345678899986 5565554 5678888888652 22233333445678899987 455 5555667899999876
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC--CCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEE
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC--DRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLM 357 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~ 357 (437)
... ....+.........|++.|.+.+|+.... .+.|...++...... .+. ...-.....++++ +..|+
T Consensus 190 g~~----~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~-~~~---~~~l~~P~glavd~~~~~lY 261 (400)
T 3p5b_L 190 GVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLV---TENIQWPNGITLDLLSGRLY 261 (400)
T ss_dssp TCS----EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE-EEE---CSSCSCEEEEEEETTTTEEE
T ss_pred CCc----eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE-EEE---ECCCCceEEEEEEeCCCEEE
Confidence 432 12222333456889999997666665543 478999998754322 221 1122344566666 44444
Q ss_pred EE-eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 358 SG-SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 358 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
.+ ...+.|..+|+...... .+....+......+|+...+ .++++-...+.|..++..+++
T Consensus 262 ~aD~~~~~I~~~d~dG~~~~-~~~~~~~~l~~P~gl~v~~~------~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 262 WVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFED------KVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEETTTTEEEEEETTSCCCE-EEEECSSTTSSEEEEEEETT------EEEEEESSSCSEEEEESSSCC
T ss_pred EEECCCCEEEEEeCCCCccE-EEEeCCCCCCCCEEEEEeCC------EEEEecCCCCeEEEEEcCCCC
Confidence 44 45678999998764422 22222222334557776433 267777777888888855553
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.02 E-value=0.014 Score=57.44 Aligned_cols=235 Identities=14% Similarity=0.090 Sum_probs=133.0
Q ss_pred EEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--Ce-EEEEecCCeEEEEeCCCCccccc
Q 013717 102 GCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GK-IFTAHQDCKIRVWQLTPTKHHKL 177 (437)
Q Consensus 102 ~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~-l~s~~~dg~i~iwd~~~~~~~~~ 177 (437)
.|.+.. ..+|+.+....|+..++.......+. .....+..|+|.. +. +++-...+.|+.+++........
T Consensus 388 ~C~~~~~~p~Ll~an~~~Ir~i~l~~~~~~~l~------~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~ 461 (791)
T 3m0c_C 388 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLI------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 461 (791)
T ss_dssp CCEETTSCCEEEEECBSSEEEECTTSCCCEEEE------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred eeeecccccccccccccceeEeeccCCcceeee------cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc
Confidence 344444 34555555558888888765333332 2345678899984 34 44555567888888864321000
Q ss_pred ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCcEEEEECCCcceEEEeeccccc
Q 013717 178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKSLKIWRASDLRCLESIKAHEDA 254 (437)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (437)
.. .++.........|+++. +.|+ +-...+.|.+.++........+......
T Consensus 462 ~~--------------------------~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~ 515 (791)
T 3m0c_C 462 YD--------------------------TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 515 (791)
T ss_dssp CE--------------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC
T ss_pred ee--------------------------EEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCC
Confidence 00 00111223445677764 4444 4456788999998755443333334456
Q ss_pred EEEEEEecC-CeEEEEe-CC-CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCc
Q 013717 255 VNAVAVSAG-GTVYTGS-AD-RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSA 330 (437)
Q Consensus 255 v~~~~~~~~-~~l~~~~-~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~ 330 (437)
...|++.|. +.|+... .. +.|...++.... ....+...-.....|++++.+..|+.+. ..+.|..+++....
T Consensus 516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~----~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cceEEEecCCCCEEEecCCCCCeEEEEecCCCc----eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 889999986 5554443 33 778888876332 1122223335788999998766666654 45689999986543
Q ss_pred cceEEeeeecccccceEEEEeeCCEEEEE-eCCCcEEEeeCCCCC
Q 013717 331 NHMVVTGALRGHGKAILCLINVAGLLMSG-SADRTVRIWQRGSDG 374 (437)
Q Consensus 331 ~~~~~~~~~~~~~~~i~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 374 (437)
.. .+... .+......+++..++.|+.. ...+.|...+..+++
T Consensus 592 ~~-~v~~~-~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 592 RK-TILED-EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp CE-EEEEC-TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred eE-EEecC-CCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCc
Confidence 32 22211 11223345677677755444 456778888876665
No 284
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.01 E-value=0.0025 Score=55.36 Aligned_cols=234 Identities=10% Similarity=0.154 Sum_probs=118.8
Q ss_pred eCCEEEEEec-----CeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEec----C-----CeEEEEeCCC
Q 013717 107 HHNFLYAASS-----HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ----D-----CKIRVWQLTP 171 (437)
Q Consensus 107 ~~~~l~s~~~-----d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~----d-----g~i~iwd~~~ 171 (437)
.+.+++.|+. +.+.+||..+.++..+..+.... .. .+++..++. ++.|+. + ..+.+||..+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR---SG-LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC---BS-CEEEEETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccc---cc-ceEEEECCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3556666652 28999999998888776543211 11 123334555 556654 2 4577888876
Q ss_pred CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC-----CcEEEEECCCcceEE
Q 013717 172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD-----KSLKIWRASDLRCLE 246 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 246 (437)
.+-... ..++. .......+.+....++.|+.+ ..+.+||..+.+-..
T Consensus 100 ~~W~~~-~~~p~---------------------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 151 (308)
T 1zgk_A 100 NQWSPC-APMSV---------------------------PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL 151 (308)
T ss_dssp TEEEEC-CCCSS---------------------------CCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEE
T ss_pred CeEeEC-CCCCc---------------------------CccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeE
Confidence 643222 11111 111122233444555555533 458889987764332
Q ss_pred E--eecccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC
Q 013717 247 S--IKAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD 318 (437)
Q Consensus 247 ~--~~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (437)
. +......-.++.+ +++ ++.|+.+ ..+.+||+..+ .+..+..+.........+.+ ++++++.|+.+
T Consensus 152 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 225 (308)
T 1zgk_A 152 VAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYD 225 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred CCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEE--CCEEEEEeCCC
Confidence 2 1111111222222 566 6666654 45888887543 23332222211122222233 56777777664
Q ss_pred -----CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCC-----CcEEEeeCCCCCCeeeeee
Q 013717 319 -----RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSAD-----RTVRIWQRGSDGRFGCLAV 381 (437)
Q Consensus 319 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~ 381 (437)
..+.+||+.+.+ +...............+...+.+++.|+.+ ..+.+||..+.+ +..+..
T Consensus 226 ~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~ 295 (308)
T 1zgk_A 226 GQDQLNSVERYDVETET--WTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT-WSEVTR 295 (308)
T ss_dssp SSSBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE-EEEEEE
T ss_pred CCCccceEEEEeCCCCc--EEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE-EeecCC
Confidence 568999998653 222222222122223334455577777654 357788887643 444433
No 285
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.01 E-value=0.0021 Score=57.16 Aligned_cols=235 Identities=13% Similarity=0.087 Sum_probs=115.4
Q ss_pred eCCEEEEEecC--eEEEEeCCC--CceeeeeccccCCCCcccEEEEEEeCCe-EEEEec-C---------CeEEEEeCCC
Q 013717 107 HHNFLYAASSH--EINVYDRTG--TTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ-D---------CKIRVWQLTP 171 (437)
Q Consensus 107 ~~~~l~s~~~d--~v~vwd~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~-d---------g~i~iwd~~~ 171 (437)
.+.+++.|+.+ .+.+||... ..|..+..+.. ....-.+++..++. ++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~---~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPG---GPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTT---CCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCC---CcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 45666666644 899999974 66777766531 11111223334555 556655 2 4588888877
Q ss_pred CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC--------------------
Q 013717 172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD-------------------- 231 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-------------------- 231 (437)
.+-..... .+. .......++.....+++.|+.+
T Consensus 96 ~~W~~~~~-~~p--------------------------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 148 (357)
T 2uvk_A 96 NSWVKLMS-HAP--------------------------MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTA 148 (357)
T ss_dssp TEEEECSC-CCS--------------------------SCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHH
T ss_pred CcEEECCC-CCC--------------------------cccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccc
Confidence 65322211 110 0112223344555677777754
Q ss_pred -------------------CcEEEEECCCcceEEE--eecccccEEEEEEecCCe-EEEEeC------CCeEEEecCCCC
Q 013717 232 -------------------KSLKIWRASDLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSA------DRKIRVWAKPFN 283 (437)
Q Consensus 232 -------------------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~------dg~v~iwd~~~~ 283 (437)
..+.+||..+.+-... +......-.+++.. +++ ++.|+. ...+.+||++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~ 227 (357)
T 2uvk_A 149 IDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGN 227 (357)
T ss_dssp HHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC--
T ss_pred hhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCC
Confidence 5789999887643322 22111111233333 556 566653 345677776333
Q ss_pred cccceeeEEeeCccccEEEEEEccCCCEEEEEeCC----------------------CcEEEEECCCCccceEEeeeecc
Q 013717 284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACD----------------------RSILVWDREDSANHMVVTGALRG 341 (437)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~ 341 (437)
...+..+..+..........+...++++++.|+.+ ..+.+||+.+.+-. ....+..
T Consensus 228 ~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~--~~~~~p~ 305 (357)
T 2uvk_A 228 NLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD--KSGELSQ 305 (357)
T ss_dssp -CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE--EEEECSS
T ss_pred CCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee--eCCCCCC
Confidence 33444333321111111111222356677777632 25789999865432 2333322
Q ss_pred cccceEEEEeeCCEEEEEeCCC------cEEEeeCCCCC
Q 013717 342 HGKAILCLINVAGLLMSGSADR------TVRIWQRGSDG 374 (437)
Q Consensus 342 ~~~~i~~~~~~~~~l~~~~~dg------~i~iwd~~~~~ 374 (437)
......++...+.+++.|+.++ .|.++++++++
T Consensus 306 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 306 GRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp CCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 2222344556666777787653 35666888766
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.99 E-value=0.0093 Score=54.45 Aligned_cols=236 Identities=11% Similarity=0.059 Sum_probs=126.9
Q ss_pred ccEEEEEEeC----CeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 143 GSVKSVTFCD----GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 143 ~~v~~l~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
.....|++++ +.|+.+...+.|+.++..+++...... .......+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-------------------------------~~~~P~gi 187 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-------------------------------NIGQCADV 187 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-------------------------------CCSCEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-------------------------------CCCCccEE
Confidence 3467888986 347666655889899887665332221 23457788
Q ss_pred EeCC-CeEEEEECCC-----cEEEEECCCcce-EEEeecccccEEEEEEec-CCeEEEEe-CCCeEEEecCCCCccccee
Q 013717 219 AVNN-GLIYSVSWDK-----SLKIWRASDLRC-LESIKAHEDAVNAVAVSA-GGTVYTGS-ADRKIRVWAKPFNEKRHAL 289 (437)
Q Consensus 219 ~~~~-~~l~~~~~dg-----~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~l~~~~-~dg~v~iwd~~~~~~~~~~ 289 (437)
++++ ..|+.+...+ .+...+...+.. ...+. .......++++| ++.|..+. .++.|+.+|........ .
T Consensus 188 avd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~ 265 (433)
T 4hw6_A 188 NFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-E 265 (433)
T ss_dssp EECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-E
T ss_pred EECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-E
Confidence 8887 3355555422 133333221111 11121 223456688898 67755444 56789999875332101 1
Q ss_pred eEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCcc----ceEEeeeec--c---------cccceEEEEe--
Q 013717 290 IATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSAN----HMVVTGALR--G---------HGKAILCLIN-- 351 (437)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~----~~~~~~~~~--~---------~~~~i~~~~~-- 351 (437)
+... +.......++|+|+|++|+.+ ...+.|+.+++..... ...+..... + .-.....+++
T Consensus 266 ~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~ 344 (433)
T 4hw6_A 266 EVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK 344 (433)
T ss_dssp EEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred Eecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence 1111 112233479999999955554 4568899988753211 111222100 0 0112344555
Q ss_pred -------eCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCC------------------CCCeeEEEEEccCCCCceE
Q 013717 352 -------VAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH------------------TKPVKSLTAVTEEGQNGVV 404 (437)
Q Consensus 352 -------~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h------------------~~~v~~l~~~~~~~~~~~~ 404 (437)
+.+ ++++-...+.|+.++.. +. +.++.+. -..-..|++.|..+ .
T Consensus 345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~----v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g----~ 415 (433)
T 4hw6_A 345 NEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GR----VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK----C 415 (433)
T ss_dssp CGGGTTSSCCEEEEEEETTTTEEEEECTT-SE----EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT----E
T ss_pred cccccccCCCCcEEEEECCCCEEEEECCC-CC----EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC----E
Confidence 333 55555556788888753 22 2222211 12367899994333 3
Q ss_pred EEEEecCCCcEEEEeec
Q 013717 405 SVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 405 ~l~s~~~dg~i~iw~~~ 421 (437)
++++=..+++|+..+++
T Consensus 416 lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 416 FYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCEEEEEecC
Confidence 66666667888888775
No 287
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.99 E-value=0.0028 Score=54.85 Aligned_cols=217 Identities=14% Similarity=0.236 Sum_probs=111.0
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC-----CeEEEEeCCCCcccccccccCccccceeee
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD-----CKIRVWQLTPTKHHKLKTTLPTVNDRLLRF 191 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 191 (437)
.+.+||..+..+..+..+.... .. .+++..++. ++.|+.+ ..+.+||..+.+-... ..++.
T Consensus 31 ~~~~~d~~~~~W~~~~~~p~~r---~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~-------- 97 (302)
T 2xn4_A 31 SVECYDFKEERWHQVAELPSRR---CR-AGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV-ANMRD-------- 97 (302)
T ss_dssp CEEEEETTTTEEEEECCCSSCC---BS-CEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEE-CCCSS--------
T ss_pred cEEEEcCcCCcEeEcccCCccc---cc-ceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeC-CCCCc--------
Confidence 6889999998887775543211 11 122333555 6666654 3577888876643222 11110
Q ss_pred cCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCC-----cEEEEECCCcceEEE--eecccccEEEEEEecCC
Q 013717 192 MLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDK-----SLKIWRASDLRCLES--IKAHEDAVNAVAVSAGG 264 (437)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~ 264 (437)
.......+.+....++.|+.++ .+.+||+.+.+-... +....... +++.. ++
T Consensus 98 -------------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~ 156 (302)
T 2xn4_A 98 -------------------RRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGVV-GG 156 (302)
T ss_dssp -------------------CCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TT
T ss_pred -------------------cccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEEE-CC
Confidence 1111223334456666676553 477888877653322 11111111 22222 56
Q ss_pred e-EEEEeCC-------CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----CcEEEEECCCCcc
Q 013717 265 T-VYTGSAD-------RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-----RSILVWDREDSAN 331 (437)
Q Consensus 265 ~-l~~~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~ 331 (437)
+ ++.|+.+ ..+.+||+.++ .+..+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~- 231 (302)
T 2xn4_A 157 LLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA- 231 (302)
T ss_dssp EEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE-
T ss_pred EEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC-
Confidence 6 5666542 45788887543 23333222221122222222 56777777664 368899997653
Q ss_pred ceEEeeeecccccceEEEEeeCCEEEEEeCCC-----cEEEeeCCCCC
Q 013717 332 HMVVTGALRGHGKAILCLINVAGLLMSGSADR-----TVRIWQRGSDG 374 (437)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~ 374 (437)
+...............+...+.+++.|+.++ .+.+||..+..
T Consensus 232 -W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 232 -WRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp -EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred -EeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 2222222211122233444555777777654 48899988654
No 288
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.93 E-value=0.0066 Score=52.38 Aligned_cols=189 Identities=10% Similarity=0.176 Sum_probs=97.4
Q ss_pred EeCCCeEEEEECC-----CcEEEEECCCcc---eEE--EeecccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCC
Q 013717 219 AVNNGLIYSVSWD-----KSLKIWRASDLR---CLE--SIKAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPF 282 (437)
Q Consensus 219 ~~~~~~l~~~~~d-----g~i~iwd~~~~~---~~~--~~~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~ 282 (437)
......++.|+.+ ..+.+||..+.+ -.. .+........++.+ +++ ++.|+.+ ..+.+||+.+
T Consensus 60 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCC
Confidence 3444666666654 468999988765 222 22211112222222 566 6666643 3678888754
Q ss_pred CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEE
Q 013717 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-----RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLM 357 (437)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 357 (437)
+ .+..+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+- ..............++...+.+++
T Consensus 138 ~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~~~~i~v 211 (301)
T 2vpj_A 138 D--QWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW--TNVTPMATKRSGAGVALLNDHIYV 211 (301)
T ss_dssp T--EEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEETTEEEE
T ss_pred C--eEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE--EeCCCCCcccccceEEEECCEEEE
Confidence 3 33333333222222222222 67777777654 4588999877532 222222222222234444555777
Q ss_pred EEeCC-----CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-----CcEEEEeeccC
Q 013717 358 SGSAD-----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-----GEIRAWQVSVS 423 (437)
Q Consensus 358 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~ 423 (437)
.|+.+ ..+.+||..+.. +..+..+......-..+ .. ++ ++++.|+.+ ..|.+||+++.
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~-~~-~~-----~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPRCYVGAT-VL-RG-----RLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEE-EE-TT-----EEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EeCCCCCcccceEEEEeCCCCc-EEECCCCCCcccceeEE-EE-CC-----EEEEEcCcCCCcccccEEEEcCCCC
Confidence 77764 468999998754 44443332222222222 22 33 377777765 35677777654
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.91 E-value=0.0082 Score=51.67 Aligned_cols=205 Identities=10% Similarity=0.103 Sum_probs=119.4
Q ss_pred cccEEEEEEeC--CeEEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 142 SGSVKSVTFCD--GKIFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 142 ~~~v~~l~~~~--~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
.....+++|.+ +.++.++ ..++|..|+...+..... .++.... + ......+..|
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~--~~~~~s~-------~--------------g~~~~~~sGl 68 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV--VIDGASS-------N--------------GDGEQQMSGL 68 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE--CCTTTCC-------S--------------SCCSEEEEEE
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE--ecCCccc-------c--------------CCCcceeeEE
Confidence 34456788885 4466665 789999999875532222 1111000 0 0011235788
Q ss_pred Ee---CC-CeEEEEEC--------------CCcEEEEECC---CcceEEEee--cc-----------cccEEEEEEecCC
Q 013717 219 AV---NN-GLIYSVSW--------------DKSLKIWRAS---DLRCLESIK--AH-----------EDAVNAVAVSAGG 264 (437)
Q Consensus 219 ~~---~~-~~l~~~~~--------------dg~i~iwd~~---~~~~~~~~~--~~-----------~~~v~~~~~~~~~ 264 (437)
.+ ++ +.|++... +..|..||+. +++.+.... .. ......++..++|
T Consensus 69 ~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G 148 (334)
T 2p9w_A 69 SLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG 148 (334)
T ss_dssp EESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS
T ss_pred EEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC
Confidence 88 45 44444322 6789999998 777766554 11 1248899999999
Q ss_pred e-EEEEeCC-CeEEEecCCCCcccceeeE-Ee--eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee--
Q 013717 265 T-VYTGSAD-RKIRVWAKPFNEKRHALIA-TL--EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG-- 337 (437)
Q Consensus 265 ~-l~~~~~d-g~v~iwd~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 337 (437)
. .++++.. +.|..++..... ..... .. .......+.|++.|+|+.|++....|.+..+|+...........
T Consensus 149 naYVt~s~~~~~I~rV~pdG~~--~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~ 226 (334)
T 2p9w_A 149 NSYVAFALGMPAIARVSADGKT--VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKIN 226 (334)
T ss_dssp CEEEEEEESSCEEEEECTTSCC--EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEES
T ss_pred CEEEeCCCCCCeEEEEeCCCCE--EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeeccccc
Confidence 9 7778888 887777664321 11111 11 11122367899999999998887799999999984322101111
Q ss_pred ----eecccccceEEEEeeCCE-EEEEeCCCcEEEeeCCC
Q 013717 338 ----ALRGHGKAILCLINVAGL-LMSGSADRTVRIWQRGS 372 (437)
Q Consensus 338 ----~~~~~~~~i~~~~~~~~~-l~~~~~dg~i~iwd~~~ 372 (437)
.+. ....+.....+++. +++....+.+.+.+...
T Consensus 227 G~~~~~~-~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 227 GDFGTLS-GTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp SCCCCCT-TEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred CCccccc-CcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 111 11222333455665 56666677666666554
No 290
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.85 E-value=0.011 Score=51.06 Aligned_cols=198 Identities=13% Similarity=0.062 Sum_probs=110.7
Q ss_pred CcEEEEEeCC-CeEEEE-ECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEe--CCC-eEEEecCCCCcccc
Q 013717 213 DAVTGLAVNN-GLIYSV-SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGS--ADR-KIRVWAKPFNEKRH 287 (437)
Q Consensus 213 ~~v~~~~~~~-~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~--~dg-~v~iwd~~~~~~~~ 287 (437)
.....+++++ ..|+.+ ..++.|..||... +....+. .......+++.++++++++. .++ .|..+|..... .
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~--~ 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--V 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC--E
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe--E
Confidence 4567889987 344444 4788999999765 3333333 34568899999999955544 222 46666654332 1
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee------eecccccceEEEEeeCCEE-EEEe
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG------ALRGHGKAILCLINVAGLL-MSGS 360 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~l-~~~~ 360 (437)
..+... ........++..+++..+++-..++.|+++|...+........ ...........++.++..| ++-.
T Consensus 108 ~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~ 186 (306)
T 2p4o_A 108 ETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT 186 (306)
T ss_dssp EEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET
T ss_pred EEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC
Confidence 112222 1222345555555555455544688999999865321111000 0001112334557777754 4455
Q ss_pred CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 361 ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 361 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
..+.|..|++...........+.. ......|++.+++. ++++....+.|.+++.+
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-----l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-----LYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-----EEEECBTTCCEEEECTT
T ss_pred CCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-----EEEEeCCCCeEEEECCC
Confidence 578899999875221111111111 13456788888773 56666667889988864
No 291
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.84 E-value=0.012 Score=50.92 Aligned_cols=217 Identities=12% Similarity=0.007 Sum_probs=118.9
Q ss_pred ccEEEEEEeCCe-EEEE-ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717 143 GSVKSVTFCDGK-IFTA-HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV 220 (437)
Q Consensus 143 ~~v~~l~~~~~~-l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (437)
.....++|+++. |+.+ ..++.|..||.+... .... ........+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~-------------------------------~~~~~p~gia~ 79 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHA-------------------------------TVEGKVSGLAF 79 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEE-------------------------------ECSSEEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEE-------------------------------eCCCCceeEEE
Confidence 567788998654 5544 467889888876432 1110 12235778888
Q ss_pred CC-CeEEEEE-C-CC-cEEEEECCCcceEEEeec-ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE---
Q 013717 221 NN-GLIYSVS-W-DK-SLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA--- 291 (437)
Q Consensus 221 ~~-~~l~~~~-~-dg-~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~--- 291 (437)
.+ ..++.+. . ++ .|..+|..+++....... .......++..+++. +++-..++.|.++|...... ....
T Consensus 80 ~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~--~v~~~~~ 157 (306)
T 2p4o_A 80 TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG--SIWLEHP 157 (306)
T ss_dssp CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE--EEEEECG
T ss_pred cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE--eEEEECC
Confidence 87 3345444 2 22 477778777765433221 122344555566666 44444688888888653210 1110
Q ss_pred -----EeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCC-Cccc-eEEeeeecccccceEEEEeeCCEEEEEeCCC
Q 013717 292 -----TLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDRED-SANH-MVVTGALRGHGKAILCLINVAGLLMSGSADR 363 (437)
Q Consensus 292 -----~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~-~~~~-~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg 363 (437)
.....-.....+ +++++.|+.+ ...+.|..|++.. ++.. ....... ....-.++..+++++++....+
T Consensus 158 ~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~ 233 (306)
T 2p4o_A 158 MLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYN 233 (306)
T ss_dssp GGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTC
T ss_pred ccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCC
Confidence 000111234555 7888766555 4578899999875 2210 1111111 1112245555666766666678
Q ss_pred cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE---ccCC
Q 013717 364 TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV---TEEG 399 (437)
Q Consensus 364 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~ 399 (437)
.|.++|.. ++ ...+..+.......++++|. ++++
T Consensus 234 ~V~~~~~~-G~-~~~~~~~~~~~~~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 234 SVVRIAPD-RS-TTIIAQAEQGVIGSTAVAFGQTEGDCT 270 (306)
T ss_dssp CEEEECTT-CC-EEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred eEEEECCC-CC-EEEEeecccccCCceEEEEecccCCCC
Confidence 89999875 33 11222333333568899998 6654
No 292
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.84 E-value=0.0089 Score=51.72 Aligned_cols=190 Identities=10% Similarity=0.120 Sum_probs=97.5
Q ss_pred EEeCCCeEEEEECC----CcEEEEECCCcceEEE--eecccccEEEEEEecCCe-EEEEeCC------CeEEEecCCCCc
Q 013717 218 LAVNNGLIYSVSWD----KSLKIWRASDLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSAD------RKIRVWAKPFNE 284 (437)
Q Consensus 218 ~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~d------g~v~iwd~~~~~ 284 (437)
+.+....++.|+.+ ..+.+||..+.+-... +.........+.+ +++ ++.|+.+ ..+.+||...+.
T Consensus 52 ~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 52 VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 33455666677654 6788999887653322 2111111222222 566 6677654 458888876432
Q ss_pred ccceeeEEeeCccccEEEEEEccCCCEEEEEeC---------CCcEEEEECCCCccceEEeeeecccccceEEEEeeCCE
Q 013717 285 KRHALIATLEKHKSAVNALALSDDGTVLFSGAC---------DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGL 355 (437)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 355 (437)
+..+..+.........+.+ ++++++.|+. -..+.+||+.+.+ +...............+...+.+
T Consensus 130 --W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i 203 (306)
T 3ii7_A 130 --WHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFVKDKI 203 (306)
T ss_dssp --EEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEE
T ss_pred --eEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEECCEE
Confidence 3333222211111122222 5666676654 3458899998753 22222222222222333445556
Q ss_pred EEEEeCC-----CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-----CcEEEEeeccC
Q 013717 356 LMSGSAD-----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-----GEIRAWQVSVS 423 (437)
Q Consensus 356 l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~ 423 (437)
++.|+.+ ..+.+||..+.+ +..+..+.........+.+ ++ ++++.|+.+ ..+.+||+++.
T Consensus 204 ~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~-----~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 204 FAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAAV--GS-----IVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEEE--TT-----EEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEEE--CC-----EEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 6666654 358899988754 4444433322222223322 22 477777754 45788887664
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.83 E-value=0.03 Score=55.15 Aligned_cols=198 Identities=12% Similarity=-0.036 Sum_probs=113.4
Q ss_pred CCCcEEEEEeCC--CeEEEE-ECCCcEEEEECCCc----ceEEEeecccccEEEEEEecCC-e-EEEEeCCCeEEEecCC
Q 013717 211 HGDAVTGLAVNN--GLIYSV-SWDKSLKIWRASDL----RCLESIKAHEDAVNAVAVSAGG-T-VYTGSADRKIRVWAKP 281 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~dg~v~iwd~~ 281 (437)
....+.+|+++. +.|+.. ...+.|+.+++... .....+.........|++.+.+ . +++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 344567888876 555544 45577888888653 2223333234556788998766 4 5566667899999886
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-C-CcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEE
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-D-RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLM 357 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~ 357 (437)
... ....+.........|++.|.+.+|+.+.. + +.|.+.++..... ..+. .........|+.+ ...|+
T Consensus 502 G~~----~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv---~~~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 502 GVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLV---TENIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp SSS----EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEE---CSSCSCEEEEEEETTTTEEE
T ss_pred CCe----EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEE---eCCCCCceEEEEecCCCeEE
Confidence 432 11122234456889999997666665543 2 6788888875432 2221 1222345566665 44444
Q ss_pred EE-eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 358 SG-SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 358 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
.+ ...+.|..+++........+ .-.+.-....+|++..+ +++++-...+.|...+..++
T Consensus 574 waD~~~~~I~~~d~dG~~~~~v~-~~~~~l~~P~glav~~~------~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 574 WVDSKLHSISSIDVNGGNRKTIL-EDEKRLAHPFSLAVFED------KVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEETTTTEEEEEETTSCSCEEEE-ECTTTTSSEEEEEEETT------EEEEEETTTTEEEEEETTTC
T ss_pred EEeCCCCcEEEEecCCCceEEEe-cCCCccCCCCEEEEeCC------EEEEEECCCCEEEEEeCCCC
Confidence 44 45668999998764422221 11122233456666443 26666666777877775554
No 294
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.82 E-value=0.01 Score=51.22 Aligned_cols=190 Identities=11% Similarity=0.182 Sum_probs=95.8
Q ss_pred EeCCCeEEEEECC-----CcEEEEECCCcceEEE--eecccccEEEEEEecCCe-EEEEeCCC-----eEEEecCCCCcc
Q 013717 219 AVNNGLIYSVSWD-----KSLKIWRASDLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSADR-----KIRVWAKPFNEK 285 (437)
Q Consensus 219 ~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~~~ 285 (437)
.+....++.|+.+ ..+.+||..+.+-... +........++. . +++ ++.|+.++ .+.+||+.++
T Consensus 59 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~-- 134 (302)
T 2xn4_A 59 YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-L-NGLLYAVGGFDGSTGLSSVEAYNIKSN-- 134 (302)
T ss_dssp EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEEEEECSSCEEEEEEEEETTTT--
T ss_pred EECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-E-CCEEEEEcCCCCCccCceEEEEeCCCC--
Confidence 3444666666644 3588899877653322 111111122222 2 566 66776553 5777877543
Q ss_pred cceeeEEeeCccccEEEEEEccCCCEEEEEeCC-------CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEE
Q 013717 286 RHALIATLEKHKSAVNALALSDDGTVLFSGACD-------RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMS 358 (437)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 358 (437)
.+..+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+ +..............+....+.+++.
T Consensus 135 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~ 210 (302)
T 2xn4_A 135 EWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVLNNLLYAV 210 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred eEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEECCEEEEE
Confidence 23333222221122222222 56677776543 358899987653 22222222222222334445557777
Q ss_pred EeCC-----CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC-----cEEEEeeccCC
Q 013717 359 GSAD-----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG-----EIRAWQVSVSC 424 (437)
Q Consensus 359 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~ 424 (437)
|+.+ ..+.+||..+.+ +..+..+......- +++.. ++ ++++.|+.++ .+.+||+++.+
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~-~~~~~-~~-----~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNA-WRQVADMNMCRRNA-GVCAV-NG-----LLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTE-EEEECCCSSCCBSC-EEEEE-TT-----EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCCcccceEEEEeCCCCC-EeeCCCCCCccccC-eEEEE-CC-----EEEEECCcCCCcccccEEEEcCCCCe
Confidence 7764 368899988754 44443332211111 22222 22 3777777654 48888887653
No 295
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.81 E-value=0.033 Score=55.10 Aligned_cols=266 Identities=12% Similarity=0.199 Sum_probs=152.9
Q ss_pred cCCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCccc
Q 013717 98 KLPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHH 175 (437)
Q Consensus 98 ~~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~ 175 (437)
...|.||.-+ ..+|..|..+-+..||-.. .+...... ......|.++....++ |..|+.+| +..||..+.+..
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~GL~ryDG~~--~~~~~~~~--~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~ 95 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKGLFSYDGYS--TQQHFTYG--ENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYE 95 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSCEEEECSSC--EEECSCTT--STTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEEC
T ss_pred cceEEEEEECCCCCEEEEECCCccccCCCc--eEEEEccC--CCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEE
Confidence 4679999988 6677778777777788544 22221110 1234578888877554 77777665 788998765422
Q ss_pred ccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEee-----c
Q 013717 176 KLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK-----A 250 (437)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~ 250 (437)
.... .....|.++....+.|..++.+ -|..+|..+++.. .+. .
T Consensus 96 ~~~~------------------------------~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l 143 (758)
T 3ott_A 96 QPET------------------------------DFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGL 143 (758)
T ss_dssp CCSC------------------------------CCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EECHHHHCC
T ss_pred Cccc------------------------------CCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEE-EeccCCCCc
Confidence 1000 0123466665555777777776 6888998776543 231 1
Q ss_pred ccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeC----ccccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717 251 HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEK----HKSAVNALALSDDGTVLFSGACDRSILVWDR 326 (437)
Q Consensus 251 ~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (437)
....|.++....++.+..|+.+| |..+|..... .... .... ....|.++...+++..|..|+. +-+..+|.
T Consensus 144 ~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~--~~~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~ 218 (758)
T 3ott_A 144 PNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGK--FEGI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFP 218 (758)
T ss_dssp SCSCEEEEEECTTCCEEEEETTE-EEEEETTTTE--EEEE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEET
T ss_pred CCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCc--eEEe-cCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcC
Confidence 23568888888888877787654 6777654322 1111 0111 1234888888877776666664 45888998
Q ss_pred CCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeec-----CCCCCeeEEEEEccCCC
Q 013717 327 EDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLE-----GHTKPVKSLTAVTEEGQ 400 (437)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~ 400 (437)
.+.+.. ....+ ....|.++..+.+ .|..|+.+ -+.+++..+.. +..+.... -....|.++....++.
T Consensus 219 ~~~~~~--~~~~l--~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~- 291 (758)
T 3ott_A 219 STGQIK--QTEAF--HNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTP-LQHIIHDSRNIQSLTNNIIWNIFADQEHN- 291 (758)
T ss_dssp TTTEEE--EEEEE--EEEEEEEEEECTTCCEEEEETT-EEEEECCTTSC-CEEECCCTTCTTSCSCSCEEEEEECTTCC-
T ss_pred CCCeEE--eccCC--CCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCc-EEEEEcCCCCcCcCCcCeEEEEEEcCCCC-
Confidence 764321 11111 2345677776644 56666655 48888876543 11111100 1234588886655552
Q ss_pred CceEEEEEecCCCcEEEE
Q 013717 401 NGVVSVFSGSLDGEIRAW 418 (437)
Q Consensus 401 ~~~~~l~s~~~dg~i~iw 418 (437)
|..|...| +.++
T Consensus 292 -----lWiGT~~G-l~~~ 303 (758)
T 3ott_A 292 -----IWLGTDYG-ISLS 303 (758)
T ss_dssp -----EEEEESSS-EEEE
T ss_pred -----EEEEeCCc-cccc
Confidence 55555556 4433
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.81 E-value=0.014 Score=50.71 Aligned_cols=191 Identities=13% Similarity=0.154 Sum_probs=116.9
Q ss_pred CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC----Ce---EEEEe--C--CCeEEEecCCCCcccceeeE
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG----GT---VYTGS--A--DRKIRVWAKPFNEKRHALIA 291 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---l~~~~--~--dg~v~iwd~~~~~~~~~~~~ 291 (437)
..++.....+-+.+||+ +++.++.+.. +.++.+.+-|+ |+ ++.++ . +++|.+|++...... +.
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---l~ 114 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---LQ 114 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---EE
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---ee
Confidence 56676777889999999 8888888753 56777776653 22 33333 3 579999977432222 22
Q ss_pred EeeC------cc-ccEEEEEE--ccC-CC-EEEEEeCCCcEEEEECC---CCccceEEeeeecccccceEEEEeeC--CE
Q 013717 292 TLEK------HK-SAVNALAL--SDD-GT-VLFSGACDRSILVWDRE---DSANHMVVTGALRGHGKAILCLINVA--GL 355 (437)
Q Consensus 292 ~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~i~~~~~~~--~~ 355 (437)
.+.. .. ..+..+++ +|. ++ ++++...+|.+..|++. .+.....+...+.- ...+-.+..++ ..
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence 2211 11 45667777 774 44 68888899999999984 33233334444432 33455555654 49
Q ss_pred EEEEeCCCcEEEeeCCCCC--Ceeeeeeec-CCC-CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 356 LMSGSADRTVRIWQRGSDG--RFGCLAVLE-GHT-KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 356 l~~~~~dg~i~iwd~~~~~--~~~~~~~~~-~h~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
|+.+-++.-|..|+.+... ....+.... ++- ..+..|+..+..+. .+.+|+++=.+.+..+||.+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g-~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADG-KGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGG-CEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCC-CEEEEEEcCCCCEEEEEECC
Confidence 9999998666666644221 223444442 332 36889988643211 11355555467899999986
No 297
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.77 E-value=0.016 Score=50.33 Aligned_cols=194 Identities=13% Similarity=0.045 Sum_probs=115.9
Q ss_pred cEEEEEeCC--CeEEEE-ECCCcEEEEECCCcceE-EEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccc
Q 013717 214 AVTGLAVNN--GLIYSV-SWDKSLKIWRASDLRCL-ESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
...++.|++ +.|+.. ...+.|..+++...... ..+...-.....+++.+ .+. +++-...+.|.++++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-- 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-- 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--
Confidence 456788876 555544 45678999998765321 22222234566788886 455 45556678999998764321
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEEEEeC--CCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEE-EEEeCC
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLFSGAC--DRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLL-MSGSAD 362 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d 362 (437)
.............+++.|.+..|+.+.. .+.|..+++..... ..+.. ..-.....++++ +..| ++=+..
T Consensus 114 --~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~---~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 114 --KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIIN---SEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp --EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEEC---SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred --EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEEE---CCCCCccEEEEeccCCEEEEEECCC
Confidence 1112234456789999997666666553 57888888864322 22211 112234566666 3444 444557
Q ss_pred CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 363 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
+.|..+|+...... . ...+......++++..+ .++++-...+.|..++..+++
T Consensus 188 ~~I~~~d~dG~~~~-~--~~~~~~~~P~glav~~~------~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 188 NFIHKSNLDGTNRQ-A--VVKGSLPHPFALTLFED------ILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp TEEEEEETTSCSCE-E--EECSCCSCEEEEEEETT------EEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceE-E--EecCCCCCceEEEEeCC------EEEEEecCCCeEEEEECCCCC
Confidence 78999998754321 1 12223445677777543 267777777889888886654
No 298
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.73 E-value=0.016 Score=50.28 Aligned_cols=225 Identities=12% Similarity=0.086 Sum_probs=110.6
Q ss_pred EEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEec----C-------CeEEEEeCCCCcccccc
Q 013717 111 LYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ----D-------CKIRVWQLTPTKHHKLK 178 (437)
Q Consensus 111 l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~----d-------g~i~iwd~~~~~~~~~~ 178 (437)
|+.-+.+.+.+||..++++.. ..+.. .....-.+++..++. ++.|+. + ..+..||..+.+-.. +
T Consensus 7 l~~~GG~~~~~yd~~~~~W~~-~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~ 82 (315)
T 4asc_A 7 IFMISEEGAVAYDPAANECYC-ASLSS--QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-M 82 (315)
T ss_dssp EEEEETTEEEEEETTTTEEEE-EECCC--CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-C
T ss_pred EEEEcCCceEEECCCCCeEec-CCCCC--CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-C
Confidence 333333688899999988875 33211 112222333444555 666663 1 126778887665322 1
Q ss_pred cccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC--------CcEEEEECCCcceEEE--e
Q 013717 179 TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD--------KSLKIWRASDLRCLES--I 248 (437)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~--~ 248 (437)
..++. .......+.+....++.|+.+ ..+.+||..+.+-... +
T Consensus 83 ~~~p~---------------------------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 135 (315)
T 4asc_A 83 PPLPS---------------------------PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL 135 (315)
T ss_dssp CCBSS---------------------------CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC
T ss_pred CCCCc---------------------------chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC
Confidence 11110 000112233344566666632 4588999887643221 1
Q ss_pred ecccccEEEEEEecCCe-EEEEeC------CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC--
Q 013717 249 KAHEDAVNAVAVSAGGT-VYTGSA------DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR-- 319 (437)
Q Consensus 249 ~~~~~~v~~~~~~~~~~-l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-- 319 (437)
....... +++. -+++ ++.|+. -..+.+||..++ .+..+..+.........+.+ ++++++.|+.++
T Consensus 136 p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 209 (315)
T 4asc_A 136 PYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTG 209 (315)
T ss_dssp SSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSS
T ss_pred CCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCC
Confidence 1111111 2222 3566 666665 246888887643 23333222211111222222 567777777654
Q ss_pred ---cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCC--------------cEEEeeCCCCC
Q 013717 320 ---SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADR--------------TVRIWQRGSDG 374 (437)
Q Consensus 320 ---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~ 374 (437)
.+.+||+.+.+ +..............++...+.+++.|+.++ .+.+||..+.+
T Consensus 210 ~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 210 LTSSAEVYSITDNK--WAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEEEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred ccceEEEEECCCCe--EEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 58889987653 2222222222222234445555666776532 36788887654
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.70 E-value=0.04 Score=52.86 Aligned_cols=222 Identities=13% Similarity=0.052 Sum_probs=132.6
Q ss_pred CEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--Ce-EEEEecCCeEEEEeCCCCcccccccccCccc
Q 013717 109 NFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVN 185 (437)
Q Consensus 109 ~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 185 (437)
.+|+-+....|+..++++........+ ..-..+..|+|++ +. +++-..++.|..++++.........
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~----~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~------ 76 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPL----TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE------ 76 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCC----CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEc----CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe------
Confidence 455555555899999987543333222 2335688999985 33 4455567889888887543211111
Q ss_pred cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeE-EEEECCCcEEEEECCCcceEEEeecccccEEEEEEec
Q 013717 186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLI-YSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA 262 (437)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 262 (437)
........++++. +.| ++-...+.|.+.++........+...-.....|++.|
T Consensus 77 ------------------------~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp 132 (628)
T 4a0p_A 77 ------------------------FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDP 132 (628)
T ss_dssp ------------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEET
T ss_pred ------------------------CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEcc
Confidence 0112345677754 444 4444567899999865443332323445678999998
Q ss_pred -CCeEEEEe--CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEEeee
Q 013717 263 -GGTVYTGS--ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVVTGA 338 (437)
Q Consensus 263 -~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~ 338 (437)
.|.|+... ..+.|...+++... ...+...-.....|+++++++.|+.+. ..+.|..+|+..... ..+. .
T Consensus 133 ~~G~lY~tD~g~~~~I~r~~~dG~~-----~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-~ 205 (628)
T 4a0p_A 133 AEGFMYWTEWGGKPKIDRAAMDGSE-----RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-D 205 (628)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCS-----CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-E
T ss_pred CCCeEEEeCCCCCCEEEEEeCCCCc-----eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-c
Confidence 55655444 25678877775332 111222445788999999877666654 467899999976543 2222 1
Q ss_pred ecccccceEEEEeeCCEEEEEe-CCCcEEEeeCCCCC
Q 013717 339 LRGHGKAILCLINVAGLLMSGS-ADRTVRIWQRGSDG 374 (437)
Q Consensus 339 ~~~~~~~i~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 374 (437)
.......++..++.|+... ..+.|...|..+++
T Consensus 206 ---~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 206 ---DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp ---CCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred ---cCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence 2223456666667555444 47788888876665
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.68 E-value=0.00022 Score=69.54 Aligned_cols=223 Identities=13% Similarity=0.075 Sum_probs=119.1
Q ss_pred EEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--CeEEEE-ecCCeEEEEeCCCC----cccccccccC
Q 013717 110 FLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GKIFTA-HQDCKIRVWQLTPT----KHHKLKTTLP 182 (437)
Q Consensus 110 ~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-~~dg~i~iwd~~~~----~~~~~~~~~~ 182 (437)
+|+.+....|++.++.+.....+ + .....+..|+|.+ +.|+.+ ...+.|+.+++... .....+.
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~--~----~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~--- 449 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSL--I----PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--- 449 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECC--S----CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC---
T ss_pred eEEecCccceEEEeCCCCcceee--e----ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe---
Confidence 33333334788888877433222 1 1234566788874 335444 45578888888751 1111000
Q ss_pred ccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--Ce-EEEEECCCcEEEEECCCcceEEEeecccccEEEEE
Q 013717 183 TVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GL-IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVA 259 (437)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 259 (437)
........|+++. +. +++-...+.|.++++........+.........|+
T Consensus 450 ---------------------------~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~gia 502 (699)
T 1n7d_A 450 ---------------------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIV 502 (699)
T ss_dssp ---------------------------SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEE
T ss_pred ---------------------------CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEE
Confidence 0111234566653 33 44444567899999875544333332334567889
Q ss_pred EecCCe-EEEEe-CC-CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEE-EEeCCCcEEEEECCCCccceEE
Q 013717 260 VSAGGT-VYTGS-AD-RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF-SGACDRSILVWDREDSANHMVV 335 (437)
Q Consensus 260 ~~~~~~-l~~~~-~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~ 335 (437)
+.|.+. |+... .. +.|.++++..... .. .....-.....|+++|++..|+ +-...+.|.++++.... ...+
T Consensus 503 vDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~--l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~ 577 (699)
T 1n7d_A 503 VDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YS--LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTI 577 (699)
T ss_dssp CCSSSSCCEECCCSSSCCEEBCCSSSCCC--CE--ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEE
T ss_pred EccCCCcEEEcccCCCCeEEEEeCCCCCe--eE--EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEE
Confidence 998654 44433 22 6788887653221 11 1112234567899999765554 44456789999987532 2222
Q ss_pred eeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCC
Q 013717 336 TGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 336 ~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 374 (437)
.. ..........+++.++ ++++....+.|..++..+++
T Consensus 578 ~~-~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 578 LE-DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CC-CSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEE
T ss_pred Ee-cCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCC
Confidence 21 1111122334455556 55555567889999977655
No 301
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.61 E-value=0.026 Score=48.26 Aligned_cols=254 Identities=8% Similarity=0.098 Sum_probs=154.8
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCC
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS 196 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (437)
.|.|-|+..+.....+.+ .- .+...+|.. +++--...++.++|+++.+.++...
T Consensus 50 ~VvIiDl~n~~~~~Rrpi----~A----dsAIMnP~~~ViALrag~~LQiFnletK~klks~~----------------- 104 (365)
T 2xzh_A 50 QVVIIDMNDPSNPIRRPI----SA----DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT----------------- 104 (365)
T ss_dssp EEEEEETTSTTSCEEEEC----CC----SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEE-----------------
T ss_pred EEEEEECCCCCCcccccc----cc----ceeeeCCCccEEEEecCCeEEEechHHhhhhccee-----------------
Confidence 888899988533222222 11 122335554 4444447899999999887655443
Q ss_pred eeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCC-cceEEEeecc----cccEEEEEEecCCe--EEE
Q 013717 197 YVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASD-LRCLESIKAH----EDAVNAVAVSAGGT--VYT 268 (437)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~--l~~ 268 (437)
....|.--.|-. +.|+..+. ..|+.|++.. ..+.+.+..| ...|..-..+++.+ +++
T Consensus 105 --------------~~e~VvfWkWis~~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~ 169 (365)
T 2xzh_A 105 --------------MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLT 169 (365)
T ss_dssp --------------CSSCEEEEEECSSSEEEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEE
T ss_pred --------------cCCccEEEEecCCCeEEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEE
Confidence 345777777755 67766664 5799999974 3455555433 35677777788887 444
Q ss_pred Ee------CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC---CCEEEEEeC---CCcEEEEECCCC---ccce
Q 013717 269 GS------ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD---GTVLFSGAC---DRSILVWDREDS---ANHM 333 (437)
Q Consensus 269 ~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~---dg~i~i~d~~~~---~~~~ 333 (437)
|- -.|.+.+|..+.+ .-+.+++|......+.+.-+ .++|+.+.. .+.++|.++... ....
T Consensus 170 GI~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f 244 (365)
T 2xzh_A 170 GISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 244 (365)
T ss_dssp EEEEETTEEEEEEEEEETTTT-----EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCC
T ss_pred eEeccCCccceeEEEEeeccc-----ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCc
Confidence 43 2478889977543 45567777665544443321 123443333 268999998543 1111
Q ss_pred E--Eee---eecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEE
Q 013717 334 V--VTG---ALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSV 406 (437)
Q Consensus 334 ~--~~~---~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l 406 (437)
. ... .......-..++..+.. .++.-+.-|.|++||++++. ++..-+-...+|-.-+-....+. +
T Consensus 245 ~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt---~i~~nrIS~d~iF~ta~~~~~~G-----i 316 (365)
T 2xzh_A 245 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT---CIYMNRISGETIFVTAPHEATAG-----I 316 (365)
T ss_dssp CCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEEEGGGTE-----E
T ss_pred ccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCc---EEEEeccCCCceEEecccCCCCc-----E
Confidence 0 000 11112333355555554 88888899999999999988 77776666777766555544432 6
Q ss_pred EEecCCCcEEEEeeccCC
Q 013717 407 FSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 407 ~s~~~dg~i~iw~~~~~~ 424 (437)
+.....|.|.--.++...
T Consensus 317 ~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 317 IGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEETTCEEEEEEECTTT
T ss_pred EEEcCCCEEEEEEECccc
Confidence 666688888877776654
No 302
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.57 E-value=0.026 Score=55.70 Aligned_cols=197 Identities=8% Similarity=0.047 Sum_probs=103.5
Q ss_pred CCcc-cEEEEEEe-CCe--EEEE-ecCC----eEEEEeCCCC-cccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717 140 SSSG-SVKSVTFC-DGK--IFTA-HQDC----KIRVWQLTPT-KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209 (437)
Q Consensus 140 ~h~~-~v~~l~~~-~~~--l~s~-~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (437)
+|.. .+....|+ |++ |+.+ ..+| +|+++|+.++ +.... .+.
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~--------------------------- 220 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS--------------------------- 220 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---------------------------
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---------------------------
Confidence 3443 78889999 876 4433 3232 5999999987 52110 000
Q ss_pred cCCCcEEEEEeCC--CeEEEEECC-----CcEEEEECCCcce--EEEee-cccccEEEEEEecCCe-EEEEe---CCCeE
Q 013717 210 EHGDAVTGLAVNN--GLIYSVSWD-----KSLKIWRASDLRC--LESIK-AHEDAVNAVAVSAGGT-VYTGS---ADRKI 275 (437)
Q Consensus 210 ~~~~~v~~~~~~~--~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~~-l~~~~---~dg~v 275 (437)
.....+.|++ +.|+....| ..|.++++.+++. ...+. ........+.|+|||+ |+... ....|
T Consensus 221 ---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l 297 (751)
T 2xe4_A 221 ---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEV 297 (751)
T ss_dssp ---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred ---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceE
Confidence 0123456776 455555544 3688888877642 22222 2234467889999998 55444 23467
Q ss_pred EEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC----CcEEEEECCCCccceE-EeeeecccccceEEEE
Q 013717 276 RVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD----RSILVWDREDSANHMV-VTGALRGHGKAILCLI 350 (437)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~ 350 (437)
.++|+......................+.|..++.+++....+ ..|..+|+.++..... +.. ......+..+.
T Consensus 298 ~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~--~~~~~~l~~~~ 375 (751)
T 2xe4_A 298 HLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD--HSEDVFMESIA 375 (751)
T ss_dssp EEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC--CCSSEEEEEEE
T ss_pred EEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC--CCCCcEEEEEE
Confidence 7888765321110011122233445555554444344444443 3677777764311111 111 11122455667
Q ss_pred eeCC-EEEEEeCCCc--EEEeeC
Q 013717 351 NVAG-LLMSGSADRT--VRIWQR 370 (437)
Q Consensus 351 ~~~~-~l~~~~~dg~--i~iwd~ 370 (437)
+.++ ++++...++. |.++++
T Consensus 376 ~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 376 VRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp ECSSEEEEEEEETTEEEEEEEEC
T ss_pred EECCEEEEEEEeCCEEEEEEEec
Confidence 7766 5566666775 555564
No 303
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.53 E-value=0.037 Score=48.07 Aligned_cols=219 Identities=11% Similarity=0.103 Sum_probs=106.9
Q ss_pred CeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEec----CC-------eEEEEeCCCCcccccccccCcc
Q 013717 117 HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ----DC-------KIRVWQLTPTKHHKLKTTLPTV 184 (437)
Q Consensus 117 d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~ 184 (437)
..+.+||..++++... .+.. .....-.+++..++. ++.|+. ++ .+..||..+.+-... ..++.
T Consensus 24 ~~~~~yd~~~~~W~~~-~~~~--~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~- 98 (318)
T 2woz_A 24 TAAVAYDPMENECYLT-ALAE--QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL-PPLPS- 98 (318)
T ss_dssp SEEEEEETTTTEEEEE-EECT--TSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC-SCBSS-
T ss_pred cceEEECCCCCceecc-cCCc--cCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC-CCCCc-
Confidence 4678999999887663 2211 111222344444555 666662 12 166778776543222 11110
Q ss_pred ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC-------CcEEEEECCCcceEEE--eecccccE
Q 013717 185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD-------KSLKIWRASDLRCLES--IKAHEDAV 255 (437)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~--~~~~~~~v 255 (437)
.......+.+....++.|+.+ ..+.+||..+.+-... +......-
T Consensus 99 --------------------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 152 (318)
T 2woz_A 99 --------------------------ARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH 152 (318)
T ss_dssp --------------------------CBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC
T ss_pred --------------------------cccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc
Confidence 011112233445666667653 3478889877643322 11111111
Q ss_pred EEEEEecCCe-EEEEeC------CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----CcEEE
Q 013717 256 NAVAVSAGGT-VYTGSA------DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-----RSILV 323 (437)
Q Consensus 256 ~~~~~~~~~~-l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i 323 (437)
+++. .+++ ++.|+. -..+.+||+.++ .+..+..+.........+.+ ++++++.|+.+ ..+.+
T Consensus 153 -~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 226 (318)
T 2woz_A 153 -NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEA 226 (318)
T ss_dssp -EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEE
T ss_pred -EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEE
Confidence 1222 3666 566653 245888888643 23333222211111222222 56777777653 35778
Q ss_pred EECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCC--------------CcEEEeeCCCCC
Q 013717 324 WDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSAD--------------RTVRIWQRGSDG 374 (437)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~ 374 (437)
||+.+.+ +...............+...+.+++.|+.+ ..+.+||..+.+
T Consensus 227 yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 227 FDLKTNK--WEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp EETTTCC--EEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred EECCCCe--EEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 9987653 222222222222223344555566777654 357788887644
No 304
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.51 E-value=0.023 Score=51.85 Aligned_cols=151 Identities=7% Similarity=0.026 Sum_probs=88.5
Q ss_pred cEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCC-----eEEEecCCCCc
Q 013717 214 AVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADR-----KIRVWAKPFNE 284 (437)
Q Consensus 214 ~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~ 284 (437)
....+++++ ..|+.+...+.|+.+|..+++..... ........+++++++.|+++...+ .+..++.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 345788885 67777766689999999877655443 345568999999999955555422 23333322111
Q ss_pred ccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce--EEEEeeCCEE-EEEe
Q 013717 285 KRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGLL-MSGS 360 (437)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~l-~~~~ 360 (437)
.. ...+. .......++++| +|.+.++-..++.|+.+|..++.....+.. . +..... .++..++++| ++-.
T Consensus 219 ~~---~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~-~-~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 219 TE---RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM-M-DTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp CC---EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE-C-SCCSSCEEEEECTTSSEEEEEET
T ss_pred ec---ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec-c-CCCCCcccEEEeCCCCEEEEEeC
Confidence 10 01111 234456788999 676666666778899999876543122211 1 111222 3444445544 4445
Q ss_pred CCCcEEEeeCC
Q 013717 361 ADRTVRIWQRG 371 (437)
Q Consensus 361 ~dg~i~iwd~~ 371 (437)
..+.|+.++..
T Consensus 293 ~~~~I~~~~~d 303 (433)
T 4hw6_A 293 GKHCIYRVDYN 303 (433)
T ss_dssp TTTEEEEEEBC
T ss_pred CCCEEEEEeCC
Confidence 56789998865
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.49 E-value=0.05 Score=48.49 Aligned_cols=254 Identities=8% Similarity=0.111 Sum_probs=152.7
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCC
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS 196 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (437)
.|.|-|+..+.....+.+ .-.+...+|.. +++--...++.++|+++.+..+...
T Consensus 49 ~vvIiDl~~~~~~~rrpi--------~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~----------------- 103 (494)
T 1bpo_A 49 QVVIIDMNDPSNPIRRPI--------SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT----------------- 103 (494)
T ss_dssp EEEEEETTSTTSCEEEEC--------CCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEE-----------------
T ss_pred eEEEEECCCCCcceeccc--------ccceeeeCCCCcEEEEecCCeEEEEchHHhhhhccee-----------------
Confidence 788889887532222222 11123344444 4433347899999999887555433
Q ss_pred eeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCc-ceEEEeecc----cccEEEEEEecCCe--EEE
Q 013717 197 YVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDL-RCLESIKAH----EDAVNAVAVSAGGT--VYT 268 (437)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~--l~~ 268 (437)
....|.--.|-. +.|+..+ +..|+.|++... .+...+..| ...|..-..+++.+ +++
T Consensus 104 --------------~~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~ 168 (494)
T 1bpo_A 104 --------------MTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLT 168 (494)
T ss_dssp --------------CSSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEE
T ss_pred --------------cCCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEE
Confidence 234555666643 6666665 467999999643 455555433 35677777788887 444
Q ss_pred Ee------CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC---CEEEEEeC---CCcEEEEECCCC---ccce
Q 013717 269 GS------ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG---TVLFSGAC---DRSILVWDREDS---ANHM 333 (437)
Q Consensus 269 ~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~---dg~i~i~d~~~~---~~~~ 333 (437)
|- -.|.+.+|..+.+ .-+.+++|......+.+..+. ++++.+.. .+.++|.++... ....
T Consensus 169 GI~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 169 GISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp EEEEETTEEEEEEEEEESTTC-----CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred eecccCCcccceEEEeecccc-----ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 43 2478889977643 455677777666555443221 24444443 278999998643 1111
Q ss_pred --EEee-ee--cccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEE
Q 013717 334 --VVTG-AL--RGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSV 406 (437)
Q Consensus 334 --~~~~-~~--~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l 406 (437)
.... .+ .....-..++..+.. .++.-+.-|.|++||++++. ++..-+-...+|-.-+-....+. +
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt---~i~~nrIs~~~iF~t~~~~~~~G-----i 315 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT---CIYMNRISGETIFVTAPHEATAG-----I 315 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEEETTTTE-----E
T ss_pred cceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce---eeeeecccCCceEEecccCCCCc-----E
Confidence 0000 01 112233355555554 88888999999999999988 77666666677766555544433 6
Q ss_pred EEecCCCcEEEEeeccCC
Q 013717 407 FSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 407 ~s~~~dg~i~iw~~~~~~ 424 (437)
+.....|.|.--.++...
T Consensus 316 ~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 316 IGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEETTCEEEEEEECTTT
T ss_pred EEEccCceEEEEEEcccc
Confidence 666688888777776553
No 306
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.42 E-value=0.075 Score=48.90 Aligned_cols=244 Identities=10% Similarity=0.045 Sum_probs=134.1
Q ss_pred cEEEEEEeCC---eEEEEec-CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717 144 SVKSVTFCDG---KIFTAHQ-DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA 219 (437)
Q Consensus 144 ~v~~l~~~~~---~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (437)
....|+|+|. .|+.+.. .+.|++.|++++........-. ........++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~---------------------------~~~~~p~~ia 192 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT---------------------------IPTNRIRSIA 192 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT---------------------------SSCSBEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc---------------------------cccCCCcEEE
Confidence 5678999973 2555544 4678888888765433222100 0223578888
Q ss_pred e-------CC--CeEEEEECCC-------cEEEEECCC-cceE-----EEeecccccEEEEEEecC-Ce-EEEEeCCCeE
Q 013717 220 V-------NN--GLIYSVSWDK-------SLKIWRASD-LRCL-----ESIKAHEDAVNAVAVSAG-GT-VYTGSADRKI 275 (437)
Q Consensus 220 ~-------~~--~~l~~~~~dg-------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v 275 (437)
| ++ +.|+++...+ .|.+++... ++.. ..+.. -.....++++|+ +. +++-..++.|
T Consensus 193 ~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V 271 (496)
T 3kya_A 193 FNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQV 271 (496)
T ss_dssp ECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEE
T ss_pred EeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEE
Confidence 8 66 5566665554 266665333 2221 22222 224457888995 45 5556678889
Q ss_pred EEecCC-------CCcc------c----ceeeEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCccc----e
Q 013717 276 RVWAKP-------FNEK------R----HALIATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSANH----M 333 (437)
Q Consensus 276 ~iwd~~-------~~~~------~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~----~ 333 (437)
..+|+. .... . ...+... +.......|+|+|+|++|+.+ .....|+.++....... .
T Consensus 272 ~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~ 350 (496)
T 3kya_A 272 FRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPY 350 (496)
T ss_dssp EEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred EEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccE
Confidence 999886 2221 0 0112112 223456899999999965554 45678888665432111 1
Q ss_pred EEeeee--cccc---------cceE-EEEe---------eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC--------
Q 013717 334 VVTGAL--RGHG---------KAIL-CLIN---------VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG-------- 384 (437)
Q Consensus 334 ~~~~~~--~~~~---------~~i~-~~~~---------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------- 384 (437)
.+.... .+.. .... .+.. .++++++=...+.|+.++. .+. +.++.+
T Consensus 351 ~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~----v~TiaG~g~~~~~~ 425 (496)
T 3kya_A 351 NFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI----VSTYAGRGASTSLA 425 (496)
T ss_dssp EEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB----EEEEEESCTTHHHH
T ss_pred EecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC----EEEEeccccccccc
Confidence 222210 1110 0112 2222 2345555566788999984 332 222221
Q ss_pred ----------------CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 385 ----------------HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 385 ----------------h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.-..-..|++.++.+ .++++=..+.+||.++++....
T Consensus 426 ~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g----~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 426 DGNQWGTDDGDLREVARFRDVSGLVYDDVKE----MFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp HSCSCCCCCEETTTTCCCSSEEEEEEETTTT----EEEEEETTTTEEEEEEECCCC-
T ss_pred CccccccCCCCchhhhhcCCCcEEEEECCCC----EEEEEeCCCCEEEEEECCCCcc
Confidence 112467899998622 3666666778999999987654
No 307
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.42 E-value=0.041 Score=45.82 Aligned_cols=203 Identities=12% Similarity=0.144 Sum_probs=119.8
Q ss_pred ec-CccCCeEEEEee--CCEEEE-EecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-E-EEEecCCeEEE
Q 013717 94 QL-GHKLPIGCIAVH--HNFLYA-ASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-I-FTAHQDCKIRV 166 (437)
Q Consensus 94 ~~-~h~~~V~~l~~~--~~~l~s-~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l-~s~~~dg~i~i 166 (437)
.+ |-.+.+..++++ ++.|++ ...+ .|...|.. ++......+ . -......|++.+++ + ++.-.++.+.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l---~-g~~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL---D-FVKDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC---S-SCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec---C-CCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence 44 666789999999 555555 5555 89999998 433222222 1 22567788887554 4 44446778989
Q ss_pred EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC---
Q 013717 167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD--- 241 (437)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~--- 241 (437)
+++.............. . ............+++++ +.|+++.+.....+|.+..
T Consensus 96 ~~v~~~~~i~~~~~~~~--------------------~-~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~ 154 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKI--------------------P-LQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS 154 (255)
T ss_dssp EEECTTCCEEEEEEEEC--------------------C-CSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC
T ss_pred EEcCCCCeeeeeeeecc--------------------c-cccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc
Confidence 88875542111110000 0 00012455678999988 5777777666656665531
Q ss_pred cceEEEee-------cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeC-c------cccEEEEEE
Q 013717 242 LRCLESIK-------AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEK-H------KSAVNALAL 305 (437)
Q Consensus 242 ~~~~~~~~-------~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~------~~~i~~~~~ 305 (437)
...+..+. .+...+.+++++|... ++....++.|.++|..... .....+.. . -.....|+|
T Consensus 155 ~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~---~~~~~L~~g~~~l~~~~~qpEGia~ 231 (255)
T 3qqz_A 155 SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV---IGEMSLTKGSRGLSHNIKQAEGVAM 231 (255)
T ss_dssp SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE---EEEEECSTTGGGCSSCCCSEEEEEE
T ss_pred CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE---EEEEEcCCccCCcccccCCCCeeEE
Confidence 11122221 1234578999998654 6666778889999875321 12222221 1 136789999
Q ss_pred ccCCCEEEEEeCCCcEEEEEC
Q 013717 306 SDDGTVLFSGACDRSILVWDR 326 (437)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~ 326 (437)
.++|++.++ ++.+.+++|.-
T Consensus 232 d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 232 DASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CTTCCEEEE-ETTTEEEEEEC
T ss_pred CCCCCEEEE-cCCceEEEEEe
Confidence 999985555 67676776654
No 308
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.37 E-value=0.035 Score=47.96 Aligned_cols=188 Identities=12% Similarity=0.171 Sum_probs=93.4
Q ss_pred eCCCeEEEEEC----C-----CcEEEEECCCcceEEE--eecccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCC
Q 013717 220 VNNGLIYSVSW----D-----KSLKIWRASDLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPF 282 (437)
Q Consensus 220 ~~~~~l~~~~~----d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~ 282 (437)
+...+++.|+. + ..+.+||..+.+-... +.........+.+ +++ ++.|+.+ ..+.+||..+
T Consensus 69 ~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 69 VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence 34455555554 2 4688899877643222 1111112222222 566 5666543 4577888754
Q ss_pred CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEE
Q 013717 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-----RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLM 357 (437)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 357 (437)
+. +..+..+......-..+.+ ++++++.|+.+ ..+.+||+.+.+ +..............++...+.+++
T Consensus 147 ~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv 220 (308)
T 1zgk_A 147 DE--WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVLHNCIYA 220 (308)
T ss_dssp TE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEE
T ss_pred Ce--EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEECCEEEE
Confidence 32 2222222211122222222 56677777654 458899987653 2222222222222233444555777
Q ss_pred EEeCC-----CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-----CcEEEEeeccC
Q 013717 358 SGSAD-----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-----GEIRAWQVSVS 423 (437)
Q Consensus 358 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~ 423 (437)
.|+.+ ..+.+||+.+.+ +..+..+......- +++.. ++ ++++.|+.+ ..+.+||+++.
T Consensus 221 ~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~-~~~~~-~~-----~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 221 AGGYDGQDQLNSVERYDVETET-WTFVAPMKHRRSAL-GITVH-QG-----RIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp ECCBCSSSBCCCEEEEETTTTE-EEECCCCSSCCBSC-EEEEE-TT-----EEEEECCBCSSCBCCEEEEEETTTT
T ss_pred EeCCCCCCccceEEEEeCCCCc-EEECCCCCCCccce-EEEEE-CC-----EEEEEcCcCCCcccceEEEEcCCCC
Confidence 77664 468999998754 44443332222122 22222 22 377777754 34777877654
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.34 E-value=0.00093 Score=65.11 Aligned_cols=195 Identities=11% Similarity=-0.015 Sum_probs=105.6
Q ss_pred cEEEEEeCC--CeEEEEE-CCCcEEEEECCC----cceEEEeecccccEEEEEEecC-Ce-EEEEeCCCeEEEecCCCCc
Q 013717 214 AVTGLAVNN--GLIYSVS-WDKSLKIWRASD----LRCLESIKAHEDAVNAVAVSAG-GT-VYTGSADRKIRVWAKPFNE 284 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~~~~~ 284 (437)
.+.+++|++ +.|+.+. ..+.|+.+++.. ......+.........|++.+. +. +++-...+.|.++++....
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 445677765 5555554 457888888865 2222222111223456788754 45 4554567889999876432
Q ss_pred ccceeeEEeeCccccEEEEEEccCCCEEEEEeC-C-CcEEEEECCCCccceEEeeeecccccceEEEEee--CC-EEEEE
Q 013717 285 KRHALIATLEKHKSAVNALALSDDGTVLFSGAC-D-RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AG-LLMSG 359 (437)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~ 359 (437)
....+.........|+++|.+.+|+.+.. . +.|.++++...... .+.. ........++++ +. ++++-
T Consensus 487 ----~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~~---~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 487 ----RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVT---ENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp ----EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EESC---SSCSSCCCEEECTTTCCEEEEE
T ss_pred ----eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EEEe---CCCCCccEEEEeccCCEEEEEe
Confidence 11122222345678899996655555443 2 67888887643222 1211 111223445554 34 55555
Q ss_pred eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 360 SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 360 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
...+.|..+++..... ..+...........+|++..+ .++++....+.|..++..++
T Consensus 559 ~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~------~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 559 SKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED------KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp TTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT------EEEEECSTTTCEEEEETTTE
T ss_pred cCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC------EEEEEeCCCCeEEEEEccCC
Confidence 5677899999875432 122111112223445566543 26777777889999886544
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.32 E-value=0.063 Score=45.90 Aligned_cols=190 Identities=14% Similarity=0.157 Sum_probs=123.0
Q ss_pred eCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCc-
Q 013717 220 VNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH- 296 (437)
Q Consensus 220 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~- 296 (437)
.+| +.++.- ....+.|+|+++.+.+..+.- ...|.-=.|-.+..|+..+ +..|.-|++..+. .+.+.+..|
T Consensus 74 MnP~~~ViALr-ag~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s---~P~kvFdR~~ 147 (365)
T 2xzh_A 74 MNPASKVIALK-AGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGES---QPVKMFDRHS 147 (365)
T ss_dssp ECSSSSEEEEE-ETTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEEE-SSEEEEEESSTTC---CCEEEEECCG
T ss_pred eCCCccEEEEe-cCCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEEc-CCcEEEEcccCCC---CCceeeecch
Confidence 355 333333 378899999999998888874 4567777787666655544 4589999987533 344555544
Q ss_pred ---cccEEEEEEccCCCEEEEEeC-------CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-----EEEEEeC
Q 013717 297 ---KSAVNALALSDDGTVLFSGAC-------DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-----LLMSGSA 361 (437)
Q Consensus 297 ---~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~~~ 361 (437)
...|..-..+++.++++..+- .|.+.+|..+.. ..+.+.||...-..+...++ +++.+..
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-----EEEEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-----ccceeeeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 357888888999998775442 478899998754 44456778776666655554 3333332
Q ss_pred ---CCcEEEeeCCCC---C-Ce--eeeeee---cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 362 ---DRTVRIWQRGSD---G-RF--GCLAVL---EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 362 ---dg~i~iwd~~~~---~-~~--~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.+.++|-++... . .+ +.+..+ .+-.+--.++..++..+ ++.--..-|.|.+||++++..
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg-----viyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-----VVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT-----EEEEEETTSEEEEEETTTCCE
T ss_pred cCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC-----EEEEEeCCcEEEEEEcccCcE
Confidence 258999998543 1 11 111111 11233445677776654 677777889999999999864
No 311
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.29 E-value=0.025 Score=51.52 Aligned_cols=154 Identities=8% Similarity=-0.019 Sum_probs=90.9
Q ss_pred cEEEEEEecC--CeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC----cEEEEEC
Q 013717 254 AVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR----SILVWDR 326 (437)
Q Consensus 254 ~v~~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~ 326 (437)
....|+++|+ +.|+++...+.|+.+|+.... +..+.........++|+++|++|+++.. ++ .+.+++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-----v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-----VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-----EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-----EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 4567899973 456666666889999876432 2233334567889999999996666654 22 3444453
Q ss_pred CCCccceEEeeeecccccceEEEEee---CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCce
Q 013717 327 EDSANHMVVTGALRGHGKAILCLINV---AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV 403 (437)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 403 (437)
............ ......++.+ +.++++-..++.|+.|+...+.. ..+.... ....-..|+|+|++..
T Consensus 213 ~g~~~~~~~l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-~~~~~~~-~~~~P~gia~~pdG~~--- 283 (430)
T 3tc9_A 213 ESGFKVITELTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-TPLFTIQ-DSGWEFHIQFHPSGNY--- 283 (430)
T ss_dssp GGTSCSEEEEEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-EEEEECS-SSSCCEEEEECTTSSE---
T ss_pred CCceeeeeeecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEEEcC-CCCcceeEEEcCCCCE---
Confidence 322111111111 1112333344 33555555678899999886431 1122222 2245678999999852
Q ss_pred EEEEEecCCCcEEEEeecc
Q 013717 404 VSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 404 ~~l~s~~~dg~i~iw~~~~ 422 (437)
++++-...+.|..++.+.
T Consensus 284 -lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 284 -AYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp -EEEEETTTTEEEEEEEET
T ss_pred -EEEEECCCCEEEEEeCCc
Confidence 566667788999988764
No 312
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.21 E-value=0.2 Score=49.45 Aligned_cols=273 Identities=13% Similarity=0.204 Sum_probs=152.0
Q ss_pred cCCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccc
Q 013717 98 KLPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHK 176 (437)
Q Consensus 98 ~~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 176 (437)
...|.++... ...|..|+.+-+..||..+..... .. ......|.++...++.|..++.+ -|..+|..+++...
T Consensus 62 ~~~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~--~~---~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~ 135 (758)
T 3ott_A 62 NTRIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQ--PE---TDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTS 135 (758)
T ss_dssp SSCEEEEEEETTTEEEEEETTEEEEEETTTTEECC--CS---CCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEE
T ss_pred CceEEEEEEcCCCcEEEEeCCCeEEEeCCCCEEEC--cc---cCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEE
Confidence 4568998877 677888876678899998754332 11 11234577776666667777766 57788877654221
Q ss_pred cccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeec-----
Q 013717 177 LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKA----- 250 (437)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~----- 250 (437)
...... ......|.++..+. +.+..|..+ -|..+|..+++.......
T Consensus 136 ~~~~~~--------------------------~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~ 188 (758)
T 3ott_A 136 FDTRRN--------------------------GLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQ 188 (758)
T ss_dssp ECHHHH--------------------------CCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTC
T ss_pred eccCCC--------------------------CcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCcccc
Confidence 100000 00234688888775 667777765 477888776653321111
Q ss_pred ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717 251 HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS 329 (437)
Q Consensus 251 ~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (437)
....|.++...+++. |..|+. +-|..+|..... ......+ ....|.++....+|.+.+ |+.+ -+.+++..+.
T Consensus 189 ~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~--~~~~~~l--~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~ 261 (758)
T 3ott_A 189 SNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ--IKQTEAF--HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTT 261 (758)
T ss_dssp SSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE--EEEEEEE--EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTS
T ss_pred ccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe--EEeccCC--CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCC
Confidence 123488888877654 677774 467788765332 1111112 234688888888886554 4444 4888887654
Q ss_pred ccceEEeeee----cccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeee--e--cCCCCCeeEEEEEccCCC
Q 013717 330 ANHMVVTGAL----RGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV--L--EGHTKPVKSLTAVTEEGQ 400 (437)
Q Consensus 330 ~~~~~~~~~~----~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~--~--~~h~~~v~~l~~~~~~~~ 400 (437)
... .+.... .-....|.++..+.+ .|..|+..| +.++.... .+..... . ......|.++....++
T Consensus 262 ~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g-- 335 (758)
T 3ott_A 262 PLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKG-- 335 (758)
T ss_dssp CCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTC--
T ss_pred cEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCC--
Confidence 321 111110 012235778777654 566677667 55553322 1111111 0 0123467787665555
Q ss_pred CceEEEEEecCCCcEEEEeec
Q 013717 401 NGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 401 ~~~~~l~s~~~dg~i~iw~~~ 421 (437)
.|..|+.+| +..++..
T Consensus 336 ----~lWiGt~~G-l~~~~~~ 351 (758)
T 3ott_A 336 ----FYWFGGANG-LIRFTDP 351 (758)
T ss_dssp ----CEEEEETTE-EEEESCT
T ss_pred ----CEEEeeCCc-ceeeccc
Confidence 255555554 5555443
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.20 E-value=0.11 Score=46.33 Aligned_cols=181 Identities=13% Similarity=0.161 Sum_probs=120.8
Q ss_pred CCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCc----cccEEEEEE
Q 013717 230 WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH----KSAVNALAL 305 (437)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~i~~~~~ 305 (437)
...++.|+|+++.+.+..+.-. ..|.-=.|-.+..|+..+ +..|.-|++..+. .+.+.+..| ...|..-..
T Consensus 84 ag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s---~P~kvFdR~~~L~~~QIInY~~ 158 (494)
T 1bpo_A 84 AGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGES---QPVKMFDRHSSLAGCQIINYRT 158 (494)
T ss_dssp ETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTEEEEEC-SSEEEEEESSSSC---CCEEEEECCGGGTTCEEEEEEE
T ss_pred cCCeEEEEchHHhhhhcceecC-CCceEEEecCCCeEEEEc-CCeeEEecccCCC---CchhheecchhcccceEEEEEE
Confidence 3789999999999888888744 456666776666655544 4689999987533 345555544 357888888
Q ss_pred ccCCCEEEEEe-------CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-----EEEEEeCC---CcEEEeeC
Q 013717 306 SDDGTVLFSGA-------CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-----LLMSGSAD---RTVRIWQR 370 (437)
Q Consensus 306 ~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~~~d---g~i~iwd~ 370 (437)
+++.++++..+ -.|.+.+|..+.. ..+.+.||...-..+...++ +++.+... +.++|-++
T Consensus 159 d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei 233 (494)
T 1bpo_A 159 DAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEV 233 (494)
T ss_dssp CTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEEC
T ss_pred CCCCCeEEEEeecccCCcccceEEEeecccc-----ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEc
Confidence 99999877543 2578899998754 34456788777777766654 44444442 78999998
Q ss_pred CCC---C-Ce--eeeeee---cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 371 GSD---G-RF--GCLAVL---EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 371 ~~~---~-~~--~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
... . .+ +.+..+ ..-.+--.++..++..+ +++-...-|.|.+||++++..
T Consensus 234 ~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-----viyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 234 GTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-----VVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp SCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-----EEEEEETTSEEEEEETTTCCE
T ss_pred CCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-----EEEEEecCceEEEEeccccee
Confidence 653 1 11 111111 11233445777777664 677778889999999999864
No 314
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.11 E-value=0.11 Score=44.69 Aligned_cols=156 Identities=9% Similarity=0.117 Sum_probs=96.8
Q ss_pred cEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeecc-------cccEEEEEE---ecCCeEEEEeC---------
Q 013717 214 AVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKAH-------EDAVNAVAV---SAGGTVYTGSA--------- 271 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~l~~~~~--------- 271 (437)
.-.++.|++ ..++.++ ..++|..||...+......... ...+..|.+ .|+++|++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 344678876 6667666 7899999998765443332111 114688999 68888443322
Q ss_pred -----CCeEEEecCC---CCcccceeeEEeeC-----------ccccEEEEEEccCCCEEEEEeCC-CcEEEEECCCCcc
Q 013717 272 -----DRKIRVWAKP---FNEKRHALIATLEK-----------HKSAVNALALSDDGTVLFSGACD-RSILVWDREDSAN 331 (437)
Q Consensus 272 -----dg~v~iwd~~---~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~ 331 (437)
+..|..||+. ++...+ ...+.. .......++..++|+..++++.. +.|..++.... .
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~--~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~ 170 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVW--SVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T 170 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSE--EEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred cccCCCCEEEEEcCCcCCCCCEEE--EecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence 6789999987 333211 112211 11358899999999999988888 88888877643 2
Q ss_pred ceEEeeee--cccccceEEEEee--CCEEEEEeCCCcEEEeeCCC
Q 013717 332 HMVVTGAL--RGHGKAILCLINV--AGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 332 ~~~~~~~~--~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~ 372 (437)
...+.... .........+.++ ++.|++....|.|..+|+..
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 22121111 1111223455555 55666666699999999885
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.07 E-value=0.048 Score=48.54 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=89.8
Q ss_pred CeEEEEECCCcEEEEECCCcceEEEeecc----cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccc--------eee
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCLESIKAH----EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRH--------ALI 290 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--------~~~ 290 (437)
..++.+ .++.||.-++.....-+.++.. -..|..+..+|+|.+++-..+..|.|..+....... ...
T Consensus 33 t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~ 111 (452)
T 3pbp_A 33 TRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQI 111 (452)
T ss_dssp TEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEE
T ss_pred CEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccce
Confidence 344433 3477888787644444444422 235788999999996666677899999887322110 112
Q ss_pred EEeeC------ccccEEEEEEccC---CCEEEEEeCCCcEEEEECCCCccceE-Eeee-----ecccccceEEEEeeCC-
Q 013717 291 ATLEK------HKSAVNALALSDD---GTVLFSGACDRSILVWDREDSANHMV-VTGA-----LRGHGKAILCLINVAG- 354 (437)
Q Consensus 291 ~~~~~------~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~-----~~~~~~~i~~~~~~~~- 354 (437)
+.+.- ...+|..+.|+|- +..|++-..|+.|++||+........ +... .......+.+++|.++
T Consensus 112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~ 191 (452)
T 3pbp_A 112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDG 191 (452)
T ss_dssp EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTS
T ss_pred eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCC
Confidence 22322 2467999999994 56899999999999999986322211 2111 1122356778888766
Q ss_pred ---EEEEEeCCCcEEE
Q 013717 355 ---LLMSGSADRTVRI 367 (437)
Q Consensus 355 ---~l~~~~~dg~i~i 367 (437)
|+++.+..|-|+-
T Consensus 192 lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 192 LTLYCLNTTEGGDIFA 207 (452)
T ss_dssp SCEEEEECTTSCEEEE
T ss_pred cEEEEEecCCCCCEEE
Confidence 4555557787764
No 316
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.05 E-value=0.065 Score=47.07 Aligned_cols=158 Identities=10% Similarity=0.106 Sum_probs=89.3
Q ss_pred cEEEEEEecCCeEEEEe-------------CCCeEEEecCCCCcccceeeEEeeC-----ccccEEEEEEcc--CCC-EE
Q 013717 254 AVNAVAVSAGGTVYTGS-------------ADRKIRVWAKPFNEKRHALIATLEK-----HKSAVNALALSD--DGT-VL 312 (437)
Q Consensus 254 ~v~~~~~~~~~~l~~~~-------------~dg~v~iwd~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~--~~~-~l 312 (437)
....+++.|+|.+++++ .+|.|.++|........+.+. +.+ ..-....+.+.+ +|. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 45566677888755554 689999999864322222222 222 234677788766 454 34
Q ss_pred EEE-eC--CCcEEEEECCCCccceEEeeeecccc-cceEEEEeeC--CEEEEEe-----------------CCCcEEEee
Q 013717 313 FSG-AC--DRSILVWDREDSANHMVVTGALRGHG-KAILCLINVA--GLLMSGS-----------------ADRTVRIWQ 369 (437)
Q Consensus 313 ~~~-~~--dg~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~l~~~~-----------------~dg~i~iwd 369 (437)
+++ .. +.+|.+|++........+...+.+.. .....+..++ .+.++.. ..|.|..+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444 33 46788888766544444554444322 2335555443 3555433 123444444
Q ss_pred CCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 370 RGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 370 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
. ++ +..+...-..-+.|+|+|++.. ++++-+..+.|..|+++.
T Consensus 210 ~--~~----~~~~~~~l~~pNGia~spDg~~----lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 210 P--ND----VRVVAEGFDFANGINISPDGKY----VYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp T--TC----CEEEEEEESSEEEEEECTTSSE----EEEEEGGGTEEEEEEECT
T ss_pred C--Ce----EEEeecCCcccCcceECCCCCE----EEEEeCCCCeEEEEEECC
Confidence 3 22 1222222345789999999863 666666788999999874
No 317
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.05 E-value=0.13 Score=44.48 Aligned_cols=174 Identities=6% Similarity=0.119 Sum_probs=84.1
Q ss_pred EEEEECCCcceEEE--eecccccEEEEEEecCCe-EEEEeCC-------CeEEEecCCCCcccceeeEEeeCccccEEEE
Q 013717 234 LKIWRASDLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSAD-------RKIRVWAKPFNEKRHALIATLEKHKSAVNAL 303 (437)
Q Consensus 234 i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 303 (437)
+..||..+.+-... +....... +++.. +++ ++.|+.+ ..+.+||..++ .+..+..+......- ++
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~-~~ 154 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAA--KWSEVKNLPIKVYGH-NV 154 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTT--EEEEECCCSSCEESC-EE
T ss_pred EEEEeCCCCcEEECCCCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCC--CEeECCCCCCccccc-EE
Confidence 77888877643322 11111111 22222 566 6666653 34777877543 233322221111111 12
Q ss_pred EEccCCCEEEEEeC------CCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCC-----CcEEEeeCCC
Q 013717 304 ALSDDGTVLFSGAC------DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSAD-----RTVRIWQRGS 372 (437)
Q Consensus 304 ~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 372 (437)
+. .++++++.|+. -..+.+||+.+.+ +..............+....+.+++.|+.+ ..+.+||..+
T Consensus 155 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 155 IS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp EE-ETTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred EE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCC
Confidence 22 36667777764 2358999998753 222222221122223344455566666653 2477899887
Q ss_pred CCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC--------------CcEEEEeeccC
Q 013717 373 DGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD--------------GEIRAWQVSVS 423 (437)
Q Consensus 373 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d--------------g~i~iw~~~~~ 423 (437)
.+ +..+..+......- +++.. ++ ++++.||.+ ..+.+||+++.
T Consensus 232 ~~-W~~~~~~p~~r~~~-~~~~~-~~-----~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 232 NK-WEVMTEFPQERSSI-SLVSL-AG-----SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp CC-EEECCCCSSCCBSC-EEEEE-TT-----EEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred Ce-EEECCCCCCcccce-EEEEE-CC-----EEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 54 44444333222222 22222 22 367777754 34677776653
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.04 E-value=0.13 Score=44.40 Aligned_cols=185 Identities=12% Similarity=0.158 Sum_probs=96.0
Q ss_pred CCEEEEEec--------C----eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC--------CeEEE
Q 013717 108 HNFLYAASS--------H----EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD--------CKIRV 166 (437)
Q Consensus 108 ~~~l~s~~~--------d----~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d--------g~i~i 166 (437)
+..++.|+. . .+.+||..++++..+..+.. ...-.+++..++. ++.|+.+ ..+.+
T Consensus 46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~----~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS----PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS----CEESCEEEEETTEEEEECCEESSTTCCBCCCEEE
T ss_pred CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc----chhceeEEEECCEEEEEeCCcCCCCCcccceEEE
Confidence 777777773 1 28889999988877765521 1111233334555 5566532 45888
Q ss_pred EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEEC------CCcEEEEECC
Q 013717 167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSW------DKSLKIWRAS 240 (437)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iwd~~ 240 (437)
||..+.+-.. ...++. .......+.+....++.|+. -..+.+||..
T Consensus 122 ~d~~~~~W~~-~~~~p~---------------------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 173 (315)
T 4asc_A 122 YDRLSFKWGE-SDPLPY---------------------------VVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPK 173 (315)
T ss_dssp EETTTTEEEE-CCCCSS---------------------------CCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred ECCCCCcEeE-CCCCCC---------------------------cccceeEEEECCEEEEEeCCCCCCcccceEEEEeCC
Confidence 8887764322 111111 11112233344466666665 2468899988
Q ss_pred CcceEEE--eecccccEEEEEEecCCe-EEEEeCCC-----eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE
Q 013717 241 DLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSADR-----KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL 312 (437)
Q Consensus 241 ~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (437)
+.+-... +........++ .. +++ ++.|+.++ .+.+||+.++ .+..+..+.........+.+ +++++
T Consensus 174 ~~~W~~~~~~p~~r~~~~~~-~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~l~ 247 (315)
T 4asc_A 174 KFEWKELAPMQTARSLFGAT-VH-DGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPFEAFPQERSSLSLVSL--VGTLY 247 (315)
T ss_dssp TTEEEECCCCSSCCBSCEEE-EE-TTEEEEEEEECSSSEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred CCeEEECCCCCCchhceEEE-EE-CCEEEEEeccCCCCccceEEEEECCCC--eEEECCCCCCcccceeEEEE--CCEEE
Confidence 7643221 11111112222 22 566 67776654 5778887543 33333322211222222222 56777
Q ss_pred EEEeCCC--------------cEEEEECCCCc
Q 013717 313 FSGACDR--------------SILVWDREDSA 330 (437)
Q Consensus 313 ~~~~~dg--------------~i~i~d~~~~~ 330 (437)
+.|+.++ .+.+||+++.+
T Consensus 248 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 248 AIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EECCccccCcCCccccccccCcEEEecCCCCh
Confidence 7776542 47788887653
No 319
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.04 E-value=0.15 Score=44.97 Aligned_cols=142 Identities=9% Similarity=-0.015 Sum_probs=66.7
Q ss_pred CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC------CCcEEEEECCCCccceEEeeeecccc--c
Q 013717 273 RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC------DRSILVWDREDSANHMVVTGALRGHG--K 344 (437)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~--~ 344 (437)
..+.+||..++ .+..+..+......-.+++.. ++++++.|+. ...+.+||+......+.......... .
T Consensus 168 ~~v~~yd~~~~--~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQ--QWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTT--EEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred ccEEEEeCCCC--cEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 57888887543 344443332111110222222 5666666654 24577788733333333332221111 1
Q ss_pred ceEEEEeeCCEEEEEeCC----------------------CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCc
Q 013717 345 AILCLINVAGLLMSGSAD----------------------RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNG 402 (437)
Q Consensus 345 ~i~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 402 (437)
...+....+.+++.|+.+ ..+.+||..+.+ +..+..+......-.++ ..++
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~--~~~~---- 317 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAYGVSL--PWNN---- 317 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSEEE--EETT----
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCcccceeE--EeCC----
Confidence 122444555566667632 257889988654 55555544333222222 2233
Q ss_pred eEEEEEecCCC------cEEEEeeccCCC
Q 013717 403 VVSVFSGSLDG------EIRAWQVSVSCP 425 (437)
Q Consensus 403 ~~~l~s~~~dg------~i~iw~~~~~~~ 425 (437)
++++.||.++ .|.+++++.++-
T Consensus 318 -~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 318 -SLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp -EEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred -EEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 3777787653 355557776653
No 320
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.03 E-value=0.15 Score=44.93 Aligned_cols=236 Identities=13% Similarity=0.076 Sum_probs=117.7
Q ss_pred ccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 143 GSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 143 ~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
.....|+|.++. ++.+..+|.|.+++ +++. ..+..++ ++.........|+++
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~-~~~~~~~------------------------v~~~g~~~p~gia~~ 83 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRL-STYAELS------------------------VYHRGESGLLGLALH 83 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEE-EEEEECC------------------------CCCSTTCSEEEEEEC
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCc-cEeecce------------------------EeecCCCCceeEEEC
Confidence 356789999776 77778889999998 3331 1111110 011123467888998
Q ss_pred CC-----eEEEEECC------CcEEEEECCCcc-----eE-EEee---cccccEEEEEEecCCeEEEEeC----------
Q 013717 222 NG-----LIYSVSWD------KSLKIWRASDLR-----CL-ESIK---AHEDAVNAVAVSAGGTVYTGSA---------- 271 (437)
Q Consensus 222 ~~-----~l~~~~~d------g~i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~l~~~~~---------- 271 (437)
|+ .|+.+... +.|..++....+ .+ ..+. ........++|.|+|.|..+..
T Consensus 84 pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d 163 (352)
T 2ism_A 84 PRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQD 163 (352)
T ss_dssp TTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGC
T ss_pred CCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccC
Confidence 74 66665542 568888876432 11 1122 1112346899999999555432
Q ss_pred ----CCeEEEecCCCCc-----------ccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcE------EEEECCCC
Q 013717 272 ----DRKIRVWAKPFNE-----------KRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSI------LVWDREDS 329 (437)
Q Consensus 272 ----dg~v~iwd~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i------~i~d~~~~ 329 (437)
.|.|.-++..... ...+.. ..++ .....++|+| +|+++++-...+.+ .|.-+..+
T Consensus 164 ~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~--a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G 240 (352)
T 2ism_A 164 LASLGGKILRLTPEGEPAPGNPFLGRRGARPEVY--SLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPG 240 (352)
T ss_dssp TTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEE--EECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTT
T ss_pred CCCCceEEEEEcCCCCCCCCCcccCCCCCCccEE--EEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccC
Confidence 2566666654210 001111 1122 3467889999 66655543333321 12222222
Q ss_pred ccc--------------eEEeeeecccccceEEEEee-CCEEEEEeCCCcEEEeeCCCCCC---eeeeeeecCCCCCeeE
Q 013717 330 ANH--------------MVVTGALRGHGKAILCLINV-AGLLMSGSADRTVRIWQRGSDGR---FGCLAVLEGHTKPVKS 391 (437)
Q Consensus 330 ~~~--------------~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~ 391 (437)
... ......+..| .....+.+. +.++++.-..+.|...++..... ......+......+.+
T Consensus 241 ~nyGwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~ 319 (352)
T 2ism_A 241 GNYGWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLRE 319 (352)
T ss_dssp CBCCTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEE
T ss_pred CcCCCCcccCCCCCCCCcCCeEecCCC-CCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeE
Confidence 100 0011111112 233445544 34555555566777777764331 0011222122357899
Q ss_pred EEEEccCCCCceEEEEEecCCC
Q 013717 392 LTAVTEEGQNGVVSVFSGSLDG 413 (437)
Q Consensus 392 l~~~~~~~~~~~~~l~s~~~dg 413 (437)
+++.|++. .|+++-..+|
T Consensus 320 v~~~pdG~----lyv~~~~~~g 337 (352)
T 2ism_A 320 VQVGPDGA----LYVTTSNRDG 337 (352)
T ss_dssp EEECTTSC----EEEEECSTTT
T ss_pred EEECCCCc----EEEEEeCCCC
Confidence 99999875 3444444444
No 321
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.91 E-value=0.18 Score=43.80 Aligned_cols=183 Identities=14% Similarity=0.210 Sum_probs=110.5
Q ss_pred EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCC---------eE
Q 013717 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNG---------LI 225 (437)
Q Consensus 155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~l 225 (437)
++.....+-+.+||+ +++.+..+. .+.++.+..-+. ++
T Consensus 43 ii~t~k~~gL~Vydl-~G~~l~~~~--------------------------------~g~~nnVD~r~~~~l~g~~~dla 89 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGKMLHSYN--------------------------------TGKLNNVDIRYDFPLNGKKVDIA 89 (355)
T ss_dssp EEEEETTTEEEEEET-TSCEEEEEC--------------------------------CSCEEEEEEEEEEEETTEEEEEE
T ss_pred EEEEcCCCCEEEEcC-CCcEEEEcc--------------------------------CCCcccEEEecccccCCceEeEE
Confidence 666677789999999 565444332 133444444331 33
Q ss_pred EEEEC---CCcEEEEEC--CCcceEEEeec------cc-ccEEEEEE--ecC-Ce--EEEEeCCCeEEEecCCC---Ccc
Q 013717 226 YSVSW---DKSLKIWRA--SDLRCLESIKA------HE-DAVNAVAV--SAG-GT--VYTGSADRKIRVWAKPF---NEK 285 (437)
Q Consensus 226 ~~~~~---dg~i~iwd~--~~~~~~~~~~~------~~-~~v~~~~~--~~~-~~--l~~~~~dg~v~iwd~~~---~~~ 285 (437)
++... +++|.+|++ .+++ +..+.. .. ..+..+++ +|. +. +++...+|.+..|++.. ...
T Consensus 90 ~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~ 168 (355)
T 3amr_A 90 AASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI 168 (355)
T ss_dssp EEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE
T ss_pred EEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc
Confidence 33333 578999977 3333 444421 11 45666777 663 43 77788889999998842 224
Q ss_pred cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc-cceEEeeee-ccc-ccceEEEEe--e--CC-EEE
Q 013717 286 RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA-NHMVVTGAL-RGH-GKAILCLIN--V--AG-LLM 357 (437)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~-~~~-~~~i~~~~~--~--~~-~l~ 357 (437)
..+.++++.. .+.+..+...+....|+.+-++.-|..|+.+... ......... .++ ...+-.++. . +. +|+
T Consensus 169 ~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi 247 (355)
T 3amr_A 169 SGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM 247 (355)
T ss_dssp EEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred cceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence 5567777764 4678899999988899999998777777754221 111122222 121 123444443 2 33 566
Q ss_pred EEe-CCCcEEEeeCCC
Q 013717 358 SGS-ADRTVRIWQRGS 372 (437)
Q Consensus 358 ~~~-~dg~i~iwd~~~ 372 (437)
+++ .++++.+||...
T Consensus 248 vSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 248 ASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEGGGTEEEEEESST
T ss_pred EEcCCCCEEEEEECCC
Confidence 555 577999999973
No 322
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.78 E-value=0.2 Score=42.48 Aligned_cols=226 Identities=14% Similarity=0.140 Sum_probs=125.5
Q ss_pred ccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC
Q 013717 143 GSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN 222 (437)
Q Consensus 143 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 222 (437)
..|..|+......+.-. ||.|..|-........... .....|..++...
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~------------------------------~~~~~i~~ia~G~ 72 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA------------------------------ATQSGVDAIAAGN 72 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG------------------------------GGGSCCCEEEECS
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc------------------------------cCCCCEEEEEeCC
Confidence 46788887776633335 9999999876543222100 0223567777766
Q ss_pred CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEE
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA 302 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~ 302 (437)
...+... ||.|..|-....-.+..-......|..++...+-.++. . +|.|..|-......... .......|..
T Consensus 73 ~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg~----~~~~~~~i~~ 145 (282)
T 3qhy_B 73 YHSLALK-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTTV----PAEAQSGVTA 145 (282)
T ss_dssp SEEEEEE-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTSC----CGGGGSSEEE
T ss_pred CEEEEEE-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCCC----CccCCCCeEE
Confidence 4444445 99999997654221111111234688887764433444 3 99999995432221111 1112345777
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeee
Q 013717 303 LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVL 382 (437)
Q Consensus 303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 382 (437)
++...+ +.+.-. ||.|+.|-.....+.... ......|..++.-....+.- .||.|+.|-.....+. ...
T Consensus 146 i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gql---g~p 214 (282)
T 3qhy_B 146 LDGGVY--TALAVK-NGGVIAWGDNYFGQTTVP----AEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQT---TVP 214 (282)
T ss_dssp EEECSS--EEEEEE-TTEEEEEECCTTSTTSCC----GGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTT---CCC
T ss_pred EEcccC--EEEEEE-CCEEEEecCCCCCCCCCc----eecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCC---CCC
Confidence 766543 333334 799999987643322211 11234577777666644444 6999999976654321 111
Q ss_pred cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 383 EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 383 ~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
......|..|+.-... .++.. ||.|+.|=-....+
T Consensus 215 ~~~~~~v~~i~~G~~h------~~al~--~g~v~~wG~n~~gq 249 (282)
T 3qhy_B 215 TEALSGVSAIASGEWY------SLALK--NGKVIAWGSSRTAP 249 (282)
T ss_dssp GGGGSSCCEEEECSSC------EEEEE--TTEEEEESTTCCCC
T ss_pred cccCCCceEEEcCCCE------EEEEE--CCEEEEecCCCCcc
Confidence 1112357777765543 33333 99999997655443
No 323
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.73 E-value=0.27 Score=43.32 Aligned_cols=226 Identities=12% Similarity=0.055 Sum_probs=114.2
Q ss_pred ccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 143 GSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 143 ~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
.....|+|.++. |+.+..+|.|++++. +++ ..+..++ ++.........|+++
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~--~~~~~~~------------------------v~~~g~~g~~gia~~ 81 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGK--KLVASFD------------------------VANVGEAGLLGLALH 81 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCE--EEEEECC------------------------CCCSTTCSEEEEEEC
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc--eEeeccc------------------------eeecCCCceeeEEeC
Confidence 456789998655 888888899999873 333 1111111 001123457788888
Q ss_pred CC-----eEEEEEC----C----CcEEEEECCCc-------ceE-EEeec-ccccEEEEEEecCCeEEEEeCC-------
Q 013717 222 NG-----LIYSVSW----D----KSLKIWRASDL-------RCL-ESIKA-HEDAVNAVAVSAGGTVYTGSAD------- 272 (437)
Q Consensus 222 ~~-----~l~~~~~----d----g~i~iwd~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~l~~~~~d------- 272 (437)
|. .|+.+.. + +.|..|+.... +.+ ..+.. .......|+|.|||.|..+..+
T Consensus 82 pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~ 161 (354)
T 3a9g_A 82 PEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLA 161 (354)
T ss_dssp TTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGG
T ss_pred CCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccc
Confidence 73 6665543 2 56777776543 111 11221 1123467999999995444322
Q ss_pred -------CeEEEecCCCCccc-----ceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCC---cEEEEECCCCcc-----
Q 013717 273 -------RKIRVWAKPFNEKR-----HALIATLEKHKSAVNALALSD-DGTVLFSGACDR---SILVWDREDSAN----- 331 (437)
Q Consensus 273 -------g~v~iwd~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~----- 331 (437)
|.|..++....... ...+. ..++ .....++|+| +|+++++-...+ .|.+.. .+..
T Consensus 162 ~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~ 237 (354)
T 3a9g_A 162 QDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPL 237 (354)
T ss_dssp TCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTT
T ss_pred cCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCc
Confidence 45666654321000 00111 1122 3356899999 666555432222 233322 1110
Q ss_pred ---------ceEEeeeecccccceEEEEe---------eCCEEEEEeCCCcEEEeeCCCCCCeeeeee-ecCCCCCeeEE
Q 013717 332 ---------HMVVTGALRGHGKAILCLIN---------VAGLLMSGSADRTVRIWQRGSDGRFGCLAV-LEGHTKPVKSL 392 (437)
Q Consensus 332 ---------~~~~~~~~~~~~~~i~~~~~---------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l 392 (437)
.......+.........+.+ .+.++++.-..+.|...++........... +.+....+..+
T Consensus 238 ~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v 317 (354)
T 3a9g_A 238 ATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDV 317 (354)
T ss_dssp CCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEE
T ss_pred ccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEE
Confidence 00011111011223455554 344666555667888888875321111222 33335678999
Q ss_pred EEEccCC
Q 013717 393 TAVTEEG 399 (437)
Q Consensus 393 ~~~~~~~ 399 (437)
++.|++.
T Consensus 318 ~~~pDG~ 324 (354)
T 3a9g_A 318 VIDDDGG 324 (354)
T ss_dssp EECTTSC
T ss_pred EECCCCc
Confidence 9999874
No 324
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.57 E-value=0.19 Score=51.96 Aligned_cols=191 Identities=13% Similarity=0.165 Sum_probs=114.6
Q ss_pred eCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCc--
Q 013717 220 VNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH-- 296 (437)
Q Consensus 220 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-- 296 (437)
.+| ..+++--...++.|+|+++.+.+....- ...|.-=.|-.+..|+..+ +..|..|++..+. .+.+.+..|
T Consensus 73 MnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s---~P~k~fdR~~~ 147 (1630)
T 1xi4_A 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGES---QPVKMFDRHSS 147 (1630)
T ss_pred cCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEc-CCeEEEeccCCCC---ccHHHHhcchh
Confidence 344 3333333478999999999888877764 3456666776666544443 4579999996432 233333333
Q ss_pred --cccEEEEEEccCCCEEEEEe-------CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-----EEEEEeC-
Q 013717 297 --KSAVNALALSDDGTVLFSGA-------CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-----LLMSGSA- 361 (437)
Q Consensus 297 --~~~i~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~~~- 361 (437)
...|..-..+++.++++..+ -.|.+.+|..+.. ..+.+.||...-..+...++ +++.+..
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 222 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-----cchhhhHhHhhhheeccCCCCCCceEEEEEEec
Confidence 46788888899999877543 3588899988654 33345666665555544433 2222222
Q ss_pred --CCcEEEeeCCCC----CCe--eeeeee---cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 362 --DRTVRIWQRGSD----GRF--GCLAVL---EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 362 --dg~i~iwd~~~~----~~~--~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.+.++|-++... ..+ +.+..+ ..-.+--.++..++..+ ++.....-|.|.++|+.++..
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-----~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-----VVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-----EEEEEecCceEEEEecccchh
Confidence 268999888653 111 000001 11122233555565543 677777889999999999864
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.56 E-value=0.35 Score=42.40 Aligned_cols=177 Identities=10% Similarity=0.087 Sum_probs=99.8
Q ss_pred EEEEEeCC-CeEEEEE-------------CCCcEEEEECCCc-ceEEEee--c-----ccccEEEEEEec--CCe--EEE
Q 013717 215 VTGLAVNN-GLIYSVS-------------WDKSLKIWRASDL-RCLESIK--A-----HEDAVNAVAVSA--GGT--VYT 268 (437)
Q Consensus 215 v~~~~~~~-~~l~~~~-------------~dg~i~iwd~~~~-~~~~~~~--~-----~~~~v~~~~~~~--~~~--l~~ 268 (437)
..++...+ ..+++++ .+|.|.++|..+. .....+. + ..-....+.+.+ ++. |++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34555555 5555555 6899999998742 1122332 2 123567777765 453 444
Q ss_pred E-eC--CCeEEEecCCCCcccceeeEEeeCc-cccEEEEEEccCCCEEEEEeC-----------------CCcEEEEECC
Q 013717 269 G-SA--DRKIRVWAKPFNEKRHALIATLEKH-KSAVNALALSDDGTVLFSGAC-----------------DRSILVWDRE 327 (437)
Q Consensus 269 ~-~~--dg~v~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~ 327 (437)
+ .. +..|.+|++.........+..+.+. -...+.+++.++|.+.++... .|.|+-+|..
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 4 33 5678888876554444555555543 246889999999987776541 2456666542
Q ss_pred CCccceEEeeeecccccceEEEEeeCC--EEE-EEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc-cCC
Q 013717 328 DSANHMVVTGALRGHGKAILCLINVAG--LLM-SGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT-EEG 399 (437)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~ 399 (437)
+ ...+... -.....++++++ .|+ +-+..+.|..|++...........+. ..+..-.+++.+ ++.
T Consensus 212 --~-~~~~~~~----l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 212 --D-VRVVAEG----FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGD 279 (355)
T ss_dssp --C-CEEEEEE----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCC
T ss_pred --e-EEEeecC----CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCc
Confidence 2 2222211 123355666544 444 44567899999987543233333332 245567777777 353
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.55 E-value=0.24 Score=51.23 Aligned_cols=254 Identities=8% Similarity=0.109 Sum_probs=139.1
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCC
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS 196 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (437)
.|.|-|+..+.....+.+ .--+...+|.. +++--...++.|+|+++.+..+...
T Consensus 49 ~vvIidl~~~~~~~rrpi--------~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~----------------- 103 (1630)
T 1xi4_A 49 QVVIIDMNDPSNPIRRPI--------SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT----------------- 103 (1630)
T ss_pred eEEEEECCCCCCcccccc--------cchhhccCCCcceEEEecCCeEEEeehHHhhhhcccc-----------------
Confidence 888889887432211111 11122234444 4444457899999999876555443
Q ss_pred eeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCc-ceEEEeecc----cccEEEEEEecCCe--EEE
Q 013717 197 YVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDL-RCLESIKAH----EDAVNAVAVSAGGT--VYT 268 (437)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~--l~~ 268 (437)
...+|.--.|-. +.|+..+ +..|..|++... .+...+..| ...|..-..+++.+ +++
T Consensus 104 --------------~~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~ 168 (1630)
T 1xi4_A 104 --------------MTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLT 168 (1630)
T ss_pred --------------cCCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEE
Confidence 344666677754 6666555 457999999642 233333222 45677777788887 444
Q ss_pred Ee------CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc---CCCEEEEEeC---CCcEEEEECCCC-ccceEE
Q 013717 269 GS------ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD---DGTVLFSGAC---DRSILVWDREDS-ANHMVV 335 (437)
Q Consensus 269 ~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~---dg~i~i~d~~~~-~~~~~~ 335 (437)
|- -.|.+.+|..+.. ..+.+++|.+....+.... ....++.+.. .+.++|.++... .....+
T Consensus 169 gi~~~~~~v~G~mQLyS~er~-----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f 243 (1630)
T 1xi4_A 169 GISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (1630)
T ss_pred eeccCCCcccceeeeeecccc-----cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC
Confidence 43 3588899976543 2334555555443333321 1223332222 378999998543 110111
Q ss_pred ee-----eec--ccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEE
Q 013717 336 TG-----ALR--GHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSV 406 (437)
Q Consensus 336 ~~-----~~~--~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l 406 (437)
.. .+. ....-..++..++. .+..-+.-|.|.+||+.++. ++..-+-...+|-..+.....+. +
T Consensus 244 ~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~---~i~~~ris~~~iF~~~~~~~~~g-----~ 315 (1630)
T 1xi4_A 244 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT---CIYMNRISGETIFVTAPHEATAG-----I 315 (1630)
T ss_pred ccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccch---hhhhccccCCceEEeccCCCCCc-----e
Confidence 00 011 11222234444443 77888899999999999987 55444444445544443333222 5
Q ss_pred EEecCCCcEEEEeeccCC
Q 013717 407 FSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 407 ~s~~~dg~i~iw~~~~~~ 424 (437)
+.....|.|.--.++...
T Consensus 316 ~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 316 IGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred EEEcCCceEEEEEEccch
Confidence 555567777666665544
No 327
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.48 E-value=0.44 Score=42.53 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=89.7
Q ss_pred cCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc-------
Q 013717 262 AGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH------- 332 (437)
Q Consensus 262 ~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------- 332 (437)
.+|. ++.+ .++.||.-++.... .++.+..-. -.-..|..+..+|+|++||..+ +..|.|..+..+...
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred cCCCEEEEE-ECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 3444 4443 34778877765322 233222110 0123577899999999999886 457999988733211
Q ss_pred ---eEEeeeecc----cccceEEEEeeCC-----EEEEEeCCCcEEEeeCCCCCCeeeeeeec---------CCCCCeeE
Q 013717 333 ---MVVTGALRG----HGKAILCLINVAG-----LLMSGSADRTVRIWQRGSDGRFGCLAVLE---------GHTKPVKS 391 (437)
Q Consensus 333 ---~~~~~~~~~----~~~~i~~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~ 391 (437)
......+.. ....|..+.|++- .|++-..|+.|++||+..... .+. .+. .....|.+
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCE-EESCCCSEEESCSSCCCEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCc-chhccccccCCCcccceEEE
Confidence 111111111 2467889999864 899999999999999986321 112 222 22356888
Q ss_pred EEEEccCCCCceEEEEEecCCCcEEEE
Q 013717 392 LTAVTEEGQNGVVSVFSGSLDGEIRAW 418 (437)
Q Consensus 392 l~~~~~~~~~~~~~l~s~~~dg~i~iw 418 (437)
++|..++=. .|+++...+|.|+-.
T Consensus 185 ~~Fg~~~lT---LYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLT---LYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSC---EEEEECTTSCEEEEE
T ss_pred EEEcCCCcE---EEEEecCCCCCEEEE
Confidence 999885422 455556688888654
No 328
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.47 E-value=0.65 Score=44.43 Aligned_cols=216 Identities=15% Similarity=0.122 Sum_probs=114.8
Q ss_pred CceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEec-C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe
Q 013717 77 DETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASS-H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC 151 (437)
Q Consensus 77 dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~-d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 151 (437)
...|+.-+++........+ ..-.....|+|+ ++.|+.+.. + .|..++++.... ....+ .........|++.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~-~~~v~---~~~~~~P~GlAvD 92 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVV---VSGLLSPDGLACD 92 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEE---CSSCSCEEEEEEE
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc-eEEEE---eCCCCCcCeEEEE
Confidence 3455555554332112222 445567899998 566665554 4 899999886421 11111 1122568888888
Q ss_pred C--Ce-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE
Q 013717 152 D--GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY 226 (437)
Q Consensus 152 ~--~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~ 226 (437)
. +. +++-...+.|.+.+++......... ..-....+|+++| +.|+
T Consensus 93 ~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~------------------------------~~l~~P~~Iavdp~~g~ly 142 (619)
T 3s94_A 93 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFW------------------------------QELDQPRAIALDPSSGFMY 142 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------------------------SSCSCCCCEEEETTTTEEE
T ss_pred ecCCEEEEEeCCCCEEEEEECCCCCEEEEEe------------------------------CCCCCCceEEEecCCCeEE
Confidence 4 44 4455567899999987543211110 1223455778876 5666
Q ss_pred EEEC--CCcEEEEECCCcceEEEeecccccEEEEEEecCC-eE-EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEE
Q 013717 227 SVSW--DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TV-YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA 302 (437)
Q Consensus 227 ~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~ 302 (437)
.... .+.|...++............-...+.|++++++ +| ++-...+.|..+|+..... .... .+.......
T Consensus 143 ~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~~---~~~~~~P~g 218 (619)
T 3s94_A 143 WTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVV---KGSLPHPFA 218 (619)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE-C------------CCC
T ss_pred EeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc-EEEE---eCCCCCceE
Confidence 6553 3567767765433333332334567899999865 44 4445567899998864321 1111 111223356
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717 303 LALSDDGTVLFSGACDRSILVWDREDSAN 331 (437)
Q Consensus 303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (437)
|++..+ ..+++-...+.|...|..+++.
T Consensus 219 i~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 219 LTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 777655 4444445577898888876543
No 329
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.13 E-value=0.82 Score=42.08 Aligned_cols=155 Identities=10% Similarity=0.031 Sum_probs=89.8
Q ss_pred cEEEEEEecC--CeEEEEeC-CCeEEEecCCCCcccceeeEEee-C---ccccEEEEEE-------ccCCCEEEEEeCCC
Q 013717 254 AVNAVAVSAG--GTVYTGSA-DRKIRVWAKPFNEKRHALIATLE-K---HKSAVNALAL-------SDDGTVLFSGACDR 319 (437)
Q Consensus 254 ~v~~~~~~~~--~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~-~---~~~~i~~~~~-------~~~~~~l~~~~~dg 319 (437)
....|+++|. +.|+++.. .+.|++.|+..+. +..+. . ....+..++| +++|++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 4678899984 34544444 4678888876432 22222 1 1235899999 99999666665543
Q ss_pred -------cEEEEECCC-Cccce----EEeeeecccccceEEEEeeC--C-EEEEEeCCCcEEEeeCC-------CCCC--
Q 013717 320 -------SILVWDRED-SANHM----VVTGALRGHGKAILCLINVA--G-LLMSGSADRTVRIWQRG-------SDGR-- 375 (437)
Q Consensus 320 -------~i~i~d~~~-~~~~~----~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~i~iwd~~-------~~~~-- 375 (437)
.|.+++... +.... .....+. | ...++.++ . ++++-..++.|..+|+. ++..
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~---p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-Q---CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-C---CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CCcccCceEEEEecCCCCceeecccceeeccCC-C---ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 266776443 12110 1111211 2 22334443 3 56666678889999987 4442
Q ss_pred ---------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 376 ---------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 376 ---------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
...+... +....-..|+|+|+++. ++++-.....|+.++.+.
T Consensus 291 p~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~----lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKY----AYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp CBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSE----EEEEETTTTEEEEEEEET
T ss_pred ccccccccccceeEec-CCCCCceEEEEcCCCCE----EEEEeCCCCEEEEEecCC
Confidence 1122222 22345689999999852 466666778888877653
No 330
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.00 E-value=0.75 Score=40.49 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=49.4
Q ss_pred cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEe---eCccccEEEEEEccC---CCEEEEEeC----C---
Q 013717 252 EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATL---EKHKSAVNALALSDD---GTVLFSGAC----D--- 318 (437)
Q Consensus 252 ~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~---~~~l~~~~~----d--- 318 (437)
-.....|+|.|+|+|+++..+|.|+++|.. .. ..+..+ .........|+++|+ +..|+++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~---~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISPS-GK---KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECSS-CE---EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeCC-Cc---eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 345789999999998888888999999732 21 222222 122356889999997 555555443 3
Q ss_pred -CcEEEEECCCC
Q 013717 319 -RSILVWDREDS 329 (437)
Q Consensus 319 -g~i~i~d~~~~ 329 (437)
+.|..|+....
T Consensus 104 ~~~v~r~~~~~~ 115 (354)
T 3a9g_A 104 RNRVIRGRLDGS 115 (354)
T ss_dssp EEEEEEEEECSS
T ss_pred ceEEEEEEECCC
Confidence 57888887643
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.97 E-value=0.23 Score=39.93 Aligned_cols=187 Identities=12% Similarity=0.056 Sum_probs=93.4
Q ss_pred CeEEEEECCCcEEEEECCCcc------eEEEeec-ccccEEEEEEecCCeEEEEeCCCeEEEecCCCCccc-ce-eeEEe
Q 013717 223 GLIYSVSWDKSLKIWRASDLR------CLESIKA-HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKR-HA-LIATL 293 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~------~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~-~~~~~ 293 (437)
.+|+....| +++.=....+. ....+-. .=..+..++|+|+|.|... .+|.+.-.+..+.... +. .-..+
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEe
Confidence 355666666 65555444443 1122211 1246779999999996666 7888777665332110 00 00111
Q ss_pred -eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEe-ee-e-cccccceEEEEeeCC-EEEEEeCCCcEEEe
Q 013717 294 -EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT-GA-L-RGHGKAILCLINVAG-LLMSGSADRTVRIW 368 (437)
Q Consensus 294 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~-~-~~~~~~i~~~~~~~~-~l~~~~~dg~i~iw 368 (437)
...-..-.++.|.|+|.+.++ .||.|+-++-.+.....-+. .. + ..--..+..+.++++ .|.+.. |+.++-+
T Consensus 83 G~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~ 159 (236)
T 1tl2_A 83 GNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKA 159 (236)
T ss_dssp ECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred cccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEec
Confidence 001112478999999987777 56989888753322111000 00 0 111134567777766 555555 8875443
Q ss_pred eCCCCC--Ceeeeeee-c-CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 369 QRGSDG--RFGCLAVL-E-GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 369 d~~~~~--~~~~~~~~-~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
...... .+....+. . ..-..-+-+.|.+++ .|..+. +| ++|....+
T Consensus 160 ~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G------~l~~v~-~g--~~Y~~~~p 209 (236)
T 1tl2_A 160 LPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG------TLFGVQ-GG--KFYEDYPP 209 (236)
T ss_dssp CCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS------CEEEEE-TT--EEEEESCC
T ss_pred CCCCCCCcccccccceeccCCcceEEEEEECCCC------cEEEEe-CC--eEEecCCc
Confidence 322111 11111111 1 222234456678877 355555 66 66666443
No 332
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.22 Score=43.30 Aligned_cols=145 Identities=8% Similarity=0.077 Sum_probs=81.6
Q ss_pred CeEEEEECCCcEEEEECCCcceEEEeecc-cccEEEEEEe---cCCeEEEE--eCCCeEEEecCCCCcccceeeEEeeC-
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCLESIKAH-EDAVNAVAVS---AGGTVYTG--SADRKIRVWAKPFNEKRHALIATLEK- 295 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~---~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~- 295 (437)
+.++.++.||.|.-+|..+|+.+..++.. ..++....-. .++.++.+ +.||.|..++...+...+ ......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~--~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL--PLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE--EEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe--eeccccc
Confidence 57899999999999999999999988744 1222221111 13344444 689999999876542211 111110
Q ss_pred -ccccEEE---EEE-----ccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec-ccc--cceEEEE-------eeCCEE
Q 013717 296 -HKSAVNA---LAL-----SDDGTVLFSGACDRSILVWDREDSANHMVVTGALR-GHG--KAILCLI-------NVAGLL 356 (437)
Q Consensus 296 -~~~~i~~---~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~--~~i~~~~-------~~~~~l 356 (437)
..+++.. ... ...+..+++|+.+|.+...|+++++..+.+..... ++- ....|.. ..++.|
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 1112221 000 01355888999999999999999987665532111 000 0011111 123567
Q ss_pred EEEeCCCcEEEee
Q 013717 357 MSGSADRTVRIWQ 369 (437)
Q Consensus 357 ~~~~~dg~i~iwd 369 (437)
+.+..+..+.+.+
T Consensus 169 ~ig~~~y~v~~~~ 181 (339)
T 2be1_A 169 VIGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEEECEECC
T ss_pred EEecceEEEEEEC
Confidence 7777777777776
No 333
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.54 E-value=1.6 Score=42.51 Aligned_cols=193 Identities=9% Similarity=0.061 Sum_probs=97.5
Q ss_pred eCCCeEEEEECC----CcEEEEECCCcceEEEe-e------cccccEEEEEEec-CCe-EEEEeCC------CeEEEecC
Q 013717 220 VNNGLIYSVSWD----KSLKIWRASDLRCLESI-K------AHEDAVNAVAVSA-GGT-VYTGSAD------RKIRVWAK 280 (437)
Q Consensus 220 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~-l~~~~~d------g~v~iwd~ 280 (437)
.....++.|+.+ ..+.+||..+.+-...- . .....-.+++..+ +++ ++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 344677777653 46888998876543322 1 1111112333333 667 6677643 35778877
Q ss_pred CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC--cEEEEECCCCccceEEeee---ecccccceEEEEee---
Q 013717 281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR--SILVWDREDSANHMVVTGA---LRGHGKAILCLINV--- 352 (437)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~---~~~~~~~i~~~~~~--- 352 (437)
.++ .+..+..+...... .+++...++++++.|+.++ .+.+||..+.. +..... .........++.++
T Consensus 476 ~t~--~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 476 KTR--EWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTT--EEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCC--cEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCC
Confidence 543 33333222211111 2233323788888887655 68999998753 222221 11111111223334
Q ss_pred CCEEEEEeC--C-----CcEEEeeCCCCCC-----eeeeeeec-CCCCCeeEEEEEccCCCCceEEEEEecCC-------
Q 013717 353 AGLLMSGSA--D-----RTVRIWQRGSDGR-----FGCLAVLE-GHTKPVKSLTAVTEEGQNGVVSVFSGSLD------- 412 (437)
Q Consensus 353 ~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~d------- 412 (437)
+.+++.|+. + ..+.+||+.+..- +..+.... .....-..+ ...++ ++++.||.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~-----~iyv~GG~~~~~~~~~ 624 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPR-----KLLIVGGTSPSGLFDR 624 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETT-----EEEEECCBCSSCCCCT
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCC-----EEEEECCccCCCCCCC
Confidence 446666765 2 3588999987662 44443321 111112222 33323 367777743
Q ss_pred -CcEEEEeeccC
Q 013717 413 -GEIRAWQVSVS 423 (437)
Q Consensus 413 -g~i~iw~~~~~ 423 (437)
..|.+||+.+.
T Consensus 625 ~~~v~~yd~~t~ 636 (695)
T 2zwa_A 625 TNSIISLDPLSE 636 (695)
T ss_dssp TTSEEEEETTTT
T ss_pred CCeEEEEECCCC
Confidence 45888887754
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.73 Score=40.05 Aligned_cols=185 Identities=10% Similarity=-0.006 Sum_probs=95.9
Q ss_pred eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe----CCCeEEEE-
Q 013717 154 KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV----NNGLIYSV- 228 (437)
Q Consensus 154 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~- 228 (437)
.++.++.||.|.-.|..+++....+..-. ..++....- ....++.+
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-----------------------------~~p~~~~~~~~~~~~~~~~vv~ 62 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPEN-----------------------------FQPLIEIQEPSRLETYETLIIE 62 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGG-----------------------------SCCSEECCCSCTTTSSEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCc-----------------------------cCCcEEecCCccccCCcEEEEE
Confidence 48899999999999999988665554210 000000000 11344444
Q ss_pred -ECCCcEEEEECCCcceEEEeec----ccccEEE---EEE------ecCCeEEEEeCCCeEEEecCCCCcccceeeEEee
Q 013717 229 -SWDKSLKIWRASDLRCLESIKA----HEDAVNA---VAV------SAGGTVYTGSADRKIRVWAKPFNEKRHALIATLE 294 (437)
Q Consensus 229 -~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~---~~~------~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 294 (437)
..||.|..+|..+|.....+.. ...++.. ..+ +.++.+++|+.+|.+...|+.++.. +..+.
T Consensus 63 p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~----~W~~~ 138 (339)
T 2be1_A 63 PFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI----ISAFG 138 (339)
T ss_dssp CSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE----EEEES
T ss_pred ECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE----EEEEe
Confidence 5899999999988865544431 1112221 001 1355689999999999999887653 33333
Q ss_pred Ccc--cc-----EEEEE---Ec--cCCCEEEEEeCCCcEEEEECCCCccceEEe-eeecccccc--e---EEEEeeCCEE
Q 013717 295 KHK--SA-----VNALA---LS--DDGTVLFSGACDRSILVWDREDSANHMVVT-GALRGHGKA--I---LCLINVAGLL 356 (437)
Q Consensus 295 ~~~--~~-----i~~~~---~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~--i---~~~~~~~~~l 356 (437)
... .. ..|.. +. ..+..++.+..+..+.+.+ ++++ .+... ......... + ..+..++.+
T Consensus 139 ~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~- 215 (339)
T 2be1_A 139 PGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC- 215 (339)
T ss_dssp TTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-
T ss_pred cCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-
Confidence 211 00 00111 10 1245677777777777777 4443 22221 111111000 0 000011233
Q ss_pred EEEeCCCcEEEeeCCCCC
Q 013717 357 MSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 357 ~~~~~dg~i~iwd~~~~~ 374 (437)
+.++.||.|.-+|..++.
T Consensus 216 ~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 216 IAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp EEEETTTEEEEECSTTCC
T ss_pred EEECCCCEEEEEECCCCc
Confidence 457778888888877665
No 335
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.51 E-value=0.75 Score=36.96 Aligned_cols=151 Identities=11% Similarity=0.059 Sum_probs=79.8
Q ss_pred ccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 143 GSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 143 ~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
..+..++|+|+. |.+. .+|.+.-.+..+.+...-..... . +.. .+-. .-.++.|+
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t--------------~--IG~------~Gw~-~F~a~~fD 96 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAK--------------K--IGN------GGWN-QFQFLFFD 96 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCE--------------E--EEC------SCGG-GCSEEEEC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCccccccccc--------------E--ecc------cccc-cceEEEEC
Confidence 367799999877 6666 78876666654432111111000 0 000 0001 13577888
Q ss_pred C-CeEEEEECCCcEEEEECCCcceE------EEe-ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCc-ccce-eeE
Q 013717 222 N-GLIYSVSWDKSLKIWRASDLRCL------ESI-KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNE-KRHA-LIA 291 (437)
Q Consensus 222 ~-~~l~~~~~dg~i~iwd~~~~~~~------~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~-~~~ 291 (437)
+ ..|..+ .||.|.-++-.+.... ..+ ...=..+..|.+.|+|.|.+.. |+.+.-....... ..+. ...
T Consensus 97 ~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~ 174 (236)
T 1tl2_A 97 PNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARAT 174 (236)
T ss_dssp TTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCE
T ss_pred CCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccc
Confidence 8 555555 6799988876432111 111 1112468999999999977777 8886443222111 0000 011
Q ss_pred Eee-CccccEEEEEEccCCCEEEEEeCCCcE
Q 013717 292 TLE-KHKSAVNALALSDDGTVLFSGACDRSI 321 (437)
Q Consensus 292 ~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (437)
.+- ..-..-.-+.|.++|.+.++. +|.+
T Consensus 175 ~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 175 KIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred eeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 111 222344557799999777666 6744
No 336
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.48 E-value=1.9 Score=41.30 Aligned_cols=303 Identities=9% Similarity=0.005 Sum_probs=153.8
Q ss_pred CCeEEEEee--CCEEEEEecC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEE-EEecCCeEEEEeCCCCc
Q 013717 99 LPIGCIAVH--HNFLYAASSH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIF-TAHQDCKIRVWQLTPTK 173 (437)
Q Consensus 99 ~~V~~l~~~--~~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-s~~~dg~i~iwd~~~~~ 173 (437)
.....|+++ ++.|+.+... .|...|++....+.+.. +.......|++.++.++ +-...+.|...|..+++
T Consensus 171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-----~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-----GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSSEEEEECTTTCSEEEEESSSCC
T ss_pred CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-----CCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCc
Confidence 455778888 5666666654 89999998743322211 12223456777777744 44567789888987776
Q ss_pred ccccccccCccccceeeecCCCCe----eEEe----e-ccceeeecCCCcEEEEEe--------------CC-CeEEEEE
Q 013717 174 HHKLKTTLPTVNDRLLRFMLPNSY----VTVR----R-HKKKLWIEHGDAVTGLAV--------------NN-GLIYSVS 229 (437)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~-~~~~~~~~~~~~v~~~~~--------------~~-~~l~~~~ 229 (437)
....+..-......+. ++.+... ..+. . ....+.........|.+. .+ .+|+. +
T Consensus 246 ~~~~i~~~~~~p~~i~-v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~-~ 323 (619)
T 3s94_A 246 GLREIHSDIFSPMDIH-AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL-A 323 (619)
T ss_dssp CCEECCSCCCCCSEEE-ECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE-E
T ss_pred ccEEEecCCCCCcEEE-EEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE-E
Confidence 4433321111111111 1110000 0000 0 000000000011112111 12 23443 3
Q ss_pred CCCcEEEEECCCcceEE-Eee-cccccEEEEEEec-CCeE-EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEE
Q 013717 230 WDKSLKIWRASDLRCLE-SIK-AHEDAVNAVAVSA-GGTV-YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305 (437)
Q Consensus 230 ~dg~i~iwd~~~~~~~~-~~~-~~~~~v~~~~~~~-~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (437)
..+.|+..++....... .+. ..-..+.+++|.+ ++.| ++-...+.|..+++..... ...+...-..+..+++
T Consensus 324 ~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~----~~v~~~~~~~p~GlAv 399 (619)
T 3s94_A 324 RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS----QFVVTAQIAHPDGIAV 399 (619)
T ss_dssp ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSCCCEEEE
T ss_pred cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc----EEEEECCCCCcCceEE
Confidence 45678888886654211 111 1234578899998 4554 4445678899888764321 1112222345678899
Q ss_pred ccCCC-EEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeC--CCcEEEeeCCCCCCeeeee
Q 013717 306 SDDGT-VLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSA--DRTVRIWQRGSDGRFGCLA 380 (437)
Q Consensus 306 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~~~ 380 (437)
.+.++ +.++-...+.|.+.++..... ..+. ...-.....++.++ ..|+.... .+.|...++..... ..
T Consensus 400 D~~~~~lY~tD~~~~~I~v~~~~G~~~-~~l~---~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~---~~ 472 (619)
T 3s94_A 400 DWVARNLYWTDTGTDRIEVTRLNGTMR-KILI---SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR---VV 472 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC-EEEE---CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EE
T ss_pred ecccCcEEEEeCCCCcEEEEeCCCCeE-EEEE---ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc---EE
Confidence 87444 555555678899999876432 2222 11233456666664 34444432 35676666664331 11
Q ss_pred eecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 381 VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 381 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
.....-...+.|++.++++ ++.++=+..+.|...+++..
T Consensus 473 l~~~~l~~P~GlalD~~~~----~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 473 LVNTSLGWPNGLALDYDEG----KIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp EECSSCSCEEEEEEETTTT----EEEEEETTTTEEEEEESSSC
T ss_pred EEeCCCCCCeeeEEcccCC----EEEEEECCCCEEEEEecCCC
Confidence 2233345678999998665 25555555677888887654
No 337
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.69 E-value=3.4 Score=40.14 Aligned_cols=197 Identities=8% Similarity=0.072 Sum_probs=100.4
Q ss_pred eeCCEEEEEec----C-eEEEEeCCCCceeeee-ccc--cCCCCcccEEEEEEe-CCe-EEEEecC------CeEEEEeC
Q 013717 106 VHHNFLYAASS----H-EINVYDRTGTTWTSIN-TFN--DNDSSSGSVKSVTFC-DGK-IFTAHQD------CKIRVWQL 169 (437)
Q Consensus 106 ~~~~~l~s~~~----d-~v~vwd~~~~~~~~~~-~~~--~~~~h~~~v~~l~~~-~~~-l~s~~~d------g~i~iwd~ 169 (437)
..+..++.|+. - .+.+||..++.|..+. .+. ........-..+.+. ++. ++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 33566666663 2 7899999998888776 311 001111222233332 555 6666643 34777887
Q ss_pred CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-CCCeEEEEECCC--cEEEEECCCcceEE
Q 013717 170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-NNGLIYSVSWDK--SLKIWRASDLRCLE 246 (437)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg--~i~iwd~~~~~~~~ 246 (437)
.+.+-... ..++. ....-.++.+ ....++.|+.++ .+.+||..+.+-..
T Consensus 476 ~t~~W~~~-~~~p~---------------------------~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 476 KTREWSMI-KSLSH---------------------------TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD 527 (695)
T ss_dssp TTTEEEEC-CCCSB---------------------------CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEE
T ss_pred CCCcEEEC-CCCCC---------------------------CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEE
Confidence 76543222 11110 1111223333 447777777654 68999998765332
Q ss_pred Ee-----ecccccEEEEEEecC-Ce-EEEEeC--C-----CeEEEecCCCCcc----cceeeEEeeCccccEEEEEEccC
Q 013717 247 SI-----KAHEDAVNAVAVSAG-GT-VYTGSA--D-----RKIRVWAKPFNEK----RHALIATLEKHKSAVNALALSDD 308 (437)
Q Consensus 247 ~~-----~~~~~~v~~~~~~~~-~~-l~~~~~--d-----g~v~iwd~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~ 308 (437)
.- ........++.+..+ ++ ++.|+. + +.+.+||+..+.- .+..+.........-.++....+
T Consensus 528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~ 607 (695)
T 2zwa_A 528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP 607 (695)
T ss_dssp CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET
T ss_pred ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC
Confidence 21 111122233555554 66 666765 2 4688898875541 12222221111111112333334
Q ss_pred CCEEEEEeC--------CCcEEEEECCCCc
Q 013717 309 GTVLFSGAC--------DRSILVWDREDSA 330 (437)
Q Consensus 309 ~~~l~~~~~--------dg~i~i~d~~~~~ 330 (437)
+++++.|+. ...|.+||+.+.+
T Consensus 608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 608 RKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp TEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred CEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 677777764 3458899987654
No 338
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.40 E-value=3.7 Score=39.29 Aligned_cols=194 Identities=12% Similarity=0.067 Sum_probs=108.6
Q ss_pred cEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeec------ccccEEEEEEecCCe--EEEEeCCCeEEEecCCC
Q 013717 214 AVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKA------HEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPF 282 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~ 282 (437)
.+.++++++ +.|+.+. ..+.|+.++.........+.. ....+..|++...+. +++-+..+.|.+.+++.
T Consensus 341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G 420 (628)
T 4a0p_A 341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 420 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC
Confidence 355677765 4555444 346677776654332222221 234678999988755 45666788999998753
Q ss_pred CcccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCC--cEEEEECCCCccceEEeeeecccccceEEEEee--CCEEE
Q 013717 283 NEKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDR--SILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLM 357 (437)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~ 357 (437)
.. ....+.........|++.| .|.++++-.... .|...++.... ...+.. ..-.....++.+ .+.|+
T Consensus 421 ~~----~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~-~~~l~~---~~l~~P~gla~D~~~~~LY 492 (628)
T 4a0p_A 421 RS----VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE-REVLFF---SGLSKPIALALDSRLGKLF 492 (628)
T ss_dssp CE----EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS-CEEEEC---SSCSCEEEEEEETTTTEEE
T ss_pred Ce----EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC-cEEEEe---ccCCCccEEEEeCCCCEEE
Confidence 21 1112223446789999999 555555533222 57777776433 222221 122344566666 34555
Q ss_pred EE-eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 358 SG-SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 358 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
.+ +..+.|..+++....+. .+ .........+|+...+ .++++=...+.|...+..+++
T Consensus 493 w~D~~~~~I~~~~~dG~~r~-~~--~~~~~~~P~glav~~~------~ly~tD~~~~~i~~~~k~~G~ 551 (628)
T 4a0p_A 493 WADSDLRRIESSDLSGANRI-VL--EDSNILQPVGLTVFEN------WLYWIDKQQQMIEKIDMTGRE 551 (628)
T ss_dssp EEETTTTEEEEEETTSCSCE-EE--ECSSCSCEEEEEEETT------EEEEEETTTTEEEEEETTSSS
T ss_pred EEeCCCCEEEEEeCCCCceE-EE--EcCCCCCcEEEEEECC------EEEEEECCCCeEEEEECcCCC
Confidence 45 44678999998754421 11 1133344677777653 256666666777777766554
No 339
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.87 E-value=2.6 Score=35.58 Aligned_cols=224 Identities=11% Similarity=0.108 Sum_probs=124.9
Q ss_pred CCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCccccc
Q 013717 99 LPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKL 177 (437)
Q Consensus 99 ~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 177 (437)
..|..++.-....+.-. + .|..|-....-..-+. ......|..|+......+.-. ||.|..|-.........
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p-----~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP-----AATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC-----GGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC-----ccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC
Confidence 46777776644433335 6 9999987652110111 112346788887777633334 99999998765432211
Q ss_pred ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEE
Q 013717 178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNA 257 (437)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 257 (437)
.. .-...|..++......+... ||.|..|-....-.+..-......|..
T Consensus 97 P~------------------------------~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~ 145 (282)
T 3qhy_B 97 PA------------------------------EARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTA 145 (282)
T ss_dssp CG------------------------------GGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEE
T ss_pred Cc------------------------------ccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEE
Confidence 10 01246888888776666666 999999976542211111123445777
Q ss_pred EEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee
Q 013717 258 VAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG 337 (437)
Q Consensus 258 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (437)
++...+..++. . ||.|..|-.........+ ......|..++...+ +.++- .||.|+.|-.....+.....
T Consensus 146 i~~G~~~~~~l-~-~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~- 215 (282)
T 3qhy_B 146 LDGGVYTALAV-K-NGGVIAWGDNYFGQTTVP----AEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPT- 215 (282)
T ss_dssp EEECSSEEEEE-E-TTEEEEEECCTTSTTSCC----GGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCG-
T ss_pred EEcccCEEEEE-E-CCEEEEecCCCCCCCCCc----eecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCc-
Confidence 76654333443 3 799999954322211111 112356777776544 33333 59999999876543322111
Q ss_pred eecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717 338 ALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 338 ~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
.....|..++......++-. ||.|+.|-.....
T Consensus 216 ---~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~g 248 (282)
T 3qhy_B 216 ---EALSGVSAIASGEWYSLALK-NGKVIAWGSSRTA 248 (282)
T ss_dssp ---GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCCC
T ss_pred ---ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCCc
Confidence 11234666666555444444 9999999766544
No 340
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=93.40 E-value=3.8 Score=35.92 Aligned_cols=70 Identities=6% Similarity=0.048 Sum_probs=41.3
Q ss_pred CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC-----eEEEEec-C-----CeE
Q 013717 99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-----KIFTAHQ-D-----CKI 164 (437)
Q Consensus 99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~l~s~~~-d-----g~i 164 (437)
..-..++|. |+++++ ..+ .|.+++ .+....+..+............|+++++ .|+.+.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 345688887 665554 555 899998 3333333332211223467899999986 3444433 2 567
Q ss_pred EEEeCCC
Q 013717 165 RVWQLTP 171 (437)
Q Consensus 165 ~iwd~~~ 171 (437)
..++...
T Consensus 108 ~r~~~~~ 114 (352)
T 2ism_A 108 VRLRHLG 114 (352)
T ss_dssp EEEEECS
T ss_pred EEEEeCC
Confidence 7777664
No 341
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.62 E-value=4.9 Score=35.17 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=35.0
Q ss_pred CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 353 AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 353 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
+.++++.-..+.|...++..++.......+......+..|++.|++. .|+++-..+| +||.+.
T Consensus 289 g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~----lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 289 QKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY----LYVLTDESSG--ELLKVS 351 (353)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC----EEEEECSTTE--EEEEEE
T ss_pred CcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc----EEEEEeCCCC--EEEEEe
Confidence 44666666677788887775331111112223345799999999884 2333332344 566654
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.54 E-value=8 Score=35.25 Aligned_cols=63 Identities=8% Similarity=0.096 Sum_probs=40.1
Q ss_pred cccEEEEEEecCCeEEEEeCCC-eEEEecCCCCcccceeeEEeeC------ccccEEEEEEccC---CCEEEEEe
Q 013717 252 EDAVNAVAVSAGGTVYTGSADR-KIRVWAKPFNEKRHALIATLEK------HKSAVNALALSDD---GTVLFSGA 316 (437)
Q Consensus 252 ~~~v~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~---~~~l~~~~ 316 (437)
-...+.|+|.|+|+|+++...+ .|++++..... ...+..+.. ....+..|+|+|+ +.+|....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~--~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS--VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc--EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 3457799999999977777775 68888653222 122222221 2456789999995 55555544
No 343
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=90.94 E-value=8.2 Score=34.29 Aligned_cols=284 Identities=12% Similarity=0.101 Sum_probs=138.8
Q ss_pred ccccccccCCCceeEEecCCCcceee-----------eec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCC-c----
Q 013717 67 SVPSLQKLSPDETINFSSASHLCINS-----------VQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGT-T---- 128 (437)
Q Consensus 67 ~~~~~~s~s~dg~i~~~~~~~~~~~~-----------~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~-~---- 128 (437)
..+.++.+..||++..|=.+...++- ... -....|..++......+.-..+ .|..|-.... .
T Consensus 9 ~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred CcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 45567778889999998664433211 000 1122455555556666666666 9999975431 0
Q ss_pred ----eeeeeccccCCCCcccEEEEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEee
Q 013717 129 ----WTSINTFNDNDSSSGSVKSVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRR 202 (437)
Q Consensus 129 ----~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (437)
......+.. .....+..+.++ ....+.-..||.|..|-......+-.-.... ..
T Consensus 89 ~~~~~~~p~~v~~--~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~---------------~~--- 148 (389)
T 3kci_A 89 GTESVSTPTLLES--IQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP---------------CD--- 148 (389)
T ss_dssp SSCCEEEEEECGG--GTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC---------------EE---
T ss_pred CcCCccCCEEccc--ccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc---------------Cc---
Confidence 011111110 122334445554 3346667889999999765422111100000 00
Q ss_pred ccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc-c--------e--EEEee-cccccEEEEEEecC-CeEEEE
Q 013717 203 HKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-R--------C--LESIK-AHEDAVNAVAVSAG-GTVYTG 269 (437)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~--------~--~~~~~-~~~~~v~~~~~~~~-~~l~~~ 269 (437)
....+-.-....|..++......+....+|.|..|-.... + . ...+. .....|..++.... ...++-
T Consensus 149 ~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l 228 (389)
T 3kci_A 149 RPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCL 228 (389)
T ss_dssp EEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEE
T ss_pred CCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEE
Confidence 0000000123468888887777788889999999975321 1 0 11111 12345777766542 336666
Q ss_pred eCCCeEEEecCCCCcc------cc-eeeEEeeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc-------eE
Q 013717 270 SADRKIRVWAKPFNEK------RH-ALIATLEK-HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH-------MV 334 (437)
Q Consensus 270 ~~dg~v~iwd~~~~~~------~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~ 334 (437)
..+|.|..|-...... .. .....+.. ....|..++.. ..+.++-..||.|+.|-.....+. ..
T Consensus 229 ~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 306 (389)
T 3kci_A 229 TDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR 306 (389)
T ss_dssp ETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred ccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCcccc
Confidence 7899999994321111 00 11111111 12246666654 335555678999999976431110 01
Q ss_pred Eeeeecc-cccceEEEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717 335 VTGALRG-HGKAILCLINVAGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 335 ~~~~~~~-~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 372 (437)
....... ....|..++......++-..||.|+.|-...
T Consensus 307 ~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 307 RPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred CCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence 1111111 2235677777666777778999999997654
No 344
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.32 E-value=8.6 Score=33.50 Aligned_cols=242 Identities=13% Similarity=0.088 Sum_probs=120.9
Q ss_pred cccEEEEEEeCCe-EEEEec-CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717 142 SGSVKSVTFCDGK-IFTAHQ-DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA 219 (437)
Q Consensus 142 ~~~v~~l~~~~~~-l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (437)
-.....|+|.++. ++.+.. .|.|++++..+++.. .+..++ .++.........|+
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~-----------------------~v~~~g~~GllGia 86 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVP-----------------------GVSPSGEGGLLGIA 86 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECT-----------------------TCCCBTTBSEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccC-----------------------ceeecCCCCceeeE
Confidence 3467899999776 666666 899999986554321 111110 01112455678899
Q ss_pred eCC-----CeEEEEE---CCCcEEEEECCCc----------ceEE-Eee-cccccEEEEEEecCCeEEEE-e--------
Q 013717 220 VNN-----GLIYSVS---WDKSLKIWRASDL----------RCLE-SIK-AHEDAVNAVAVSAGGTVYTG-S-------- 270 (437)
Q Consensus 220 ~~~-----~~l~~~~---~dg~i~iwd~~~~----------~~~~-~~~-~~~~~v~~~~~~~~~~l~~~-~-------- 270 (437)
++| ..|+... .++.|.-|.+..+ +.+. .+. .....-..|+|.|||.|..+ +
T Consensus 87 ~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~ 166 (347)
T 3das_A 87 LSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLS 166 (347)
T ss_dssp ECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGT
T ss_pred eccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccc
Confidence 987 4455432 3455666665441 1111 121 11223456999999994443 2
Q ss_pred -----CCCeEEEecCCCCccc-----ceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccc-------
Q 013717 271 -----ADRKIRVWAKPFNEKR-----HALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANH------- 332 (437)
Q Consensus 271 -----~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~------- 332 (437)
..|.|.-++....... ...+. -.++ .....++|+|+|++.++=. .|+.=.|.-+..+..-
T Consensus 167 qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~-a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g 244 (347)
T 3das_A 167 QDRKSLGGKILRMTPDGEPAPGNPFPGSPVY-SYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEG 244 (347)
T ss_dssp TCTTCSTTCEEEECTTSSBCTTCSSTTCCEE-EBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCS
T ss_pred cCCCCCCCEEEEEeCCCCccCCCCCCCCeEE-eeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccC
Confidence 1355555554422100 00111 1233 3456899999887655432 2322222222222110
Q ss_pred -------eEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCC-eeeeeeecCCCCCeeEEEEEccCCCCce
Q 013717 333 -------MVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGR-FGCLAVLEGHTKPVKSLTAVTEEGQNGV 403 (437)
Q Consensus 333 -------~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 403 (437)
......+..+......+.+... ++...-..+.|....+..... .+....+.+....+.+|+..|++.
T Consensus 245 ~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~---- 320 (347)
T 3das_A 245 KGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK---- 320 (347)
T ss_dssp SCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE----
T ss_pred CCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc----
Confidence 0001111112234456666655 444444455666666654321 112233445567899999999984
Q ss_pred EEEEEecCCC
Q 013717 404 VSVFSGSLDG 413 (437)
Q Consensus 404 ~~l~s~~~dg 413 (437)
.|+++-..||
T Consensus 321 lyv~td~~~g 330 (347)
T 3das_A 321 LWLVTSNTDG 330 (347)
T ss_dssp EEEEECTTSS
T ss_pred EEEEEcCCCC
Confidence 2444444454
No 345
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=89.85 E-value=9.4 Score=33.25 Aligned_cols=170 Identities=13% Similarity=0.083 Sum_probs=87.5
Q ss_pred eecccccEEEEEEecCCeEEEEeC-CCeEEEecCCCCcccceeeEEe----eCccccEEEEEEccC---CCEEEEE---e
Q 013717 248 IKAHEDAVNAVAVSAGGTVYTGSA-DRKIRVWAKPFNEKRHALIATL----EKHKSAVNALALSDD---GTVLFSG---A 316 (437)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~---~~~l~~~---~ 316 (437)
+...-...+.|+|.|+|.++++.. .|.|++++..... ...+..+ .........|+++|+ +.+|+.. .
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~--~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR--KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc--EeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 333445678999999999777776 8999999754322 1222221 223567899999995 3444443 2
Q ss_pred CCCcEEEEECCCCc-------cceEEeeee---cccccceEEEEeeCCEEEEEeC-------------CCcEEEeeCCCC
Q 013717 317 CDRSILVWDREDSA-------NHMVVTGAL---RGHGKAILCLINVAGLLMSGSA-------------DRTVRIWQRGSD 373 (437)
Q Consensus 317 ~dg~i~i~d~~~~~-------~~~~~~~~~---~~~~~~i~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~ 373 (437)
.++.|.-|.+.... ....+...+ ..|...-..+..++.++++.+. .|.|.-.+....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 45567667665421 111222212 2455544555555655454332 244444444321
Q ss_pred ----CCe-eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 374 ----GRF-GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 374 ----~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
..+ .......+|.+ ...++|.|++. .++.--+.|+.=.|-.+..+.
T Consensus 185 ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~----L~~~d~g~~~~deln~i~~G~ 235 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRN-VQGLAWDDKQR----LFASEFGQDTWDELNAIKPGD 235 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSB-CCEEEECTTCC----EEEEECCSSSCEEEEEECTTC
T ss_pred ccCCCCCCCCeEEeeCCCC-cceEEECCCCC----EEEEecCCCCCceeeEEcCCC
Confidence 000 01112235544 45889999653 222233445444555554443
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.07 E-value=14 Score=34.43 Aligned_cols=95 Identities=11% Similarity=0.109 Sum_probs=61.6
Q ss_pred cEEEEECCC----cceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCc---------ccceeeEEeeCcc
Q 013717 233 SLKIWRASD----LRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNE---------KRHALIATLEKHK 297 (437)
Q Consensus 233 ~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~~~ 297 (437)
.+.+.|.+. +..+..+-.-......+.++|||+ ++.|-.+.++.++|++.-. .........+ ..
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CC
Confidence 467777765 322222223344556788999999 5556668999999886311 1111222333 34
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 013717 298 SAVNALALSDDGTVLFSGACDRSILVWDRED 328 (437)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (437)
-.....+|.++|+...+--.|..|..|++..
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 5678899999996566666899999999864
No 347
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=86.97 E-value=17 Score=32.65 Aligned_cols=280 Identities=9% Similarity=0.017 Sum_probs=147.8
Q ss_pred ccccCCCceeEEecCCCcce-----------eeeecCccCCeEEEEeeCCEEEEEecC-eEEEEeCCCC-cee---ee--
Q 013717 71 LQKLSPDETINFSSASHLCI-----------NSVQLGHKLPIGCIAVHHNFLYAASSH-EINVYDRTGT-TWT---SI-- 132 (437)
Q Consensus 71 ~~s~s~dg~i~~~~~~~~~~-----------~~~~~~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~-~~~---~~-- 132 (437)
.+.+..+|.+..|=.+...+ ....+..-..|..++.-+.+.+.-..+ .|..|-.... .+- ..
T Consensus 36 ~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~ 115 (423)
T 3mvd_K 36 PKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDG 115 (423)
T ss_dssp CCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTT
T ss_pred ceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCc
Confidence 34456788888885432111 111113334576776666666666667 9999976541 000 00
Q ss_pred -eccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeC--CCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717 133 -NTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQL--TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209 (437)
Q Consensus 133 -~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (437)
......-.....|..|+......+.-..||.|..|-. .....+-...... . ...+..
T Consensus 116 ~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~--~------------------~~p~~~ 175 (423)
T 3mvd_K 116 SESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGN--K------------------RTPIDL 175 (423)
T ss_dssp SSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBC--E------------------EEEEES
T ss_pred cccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCC--C------------------ceeeEe
Confidence 0000000123467777777777667788999999985 3221111000000 0 000001
Q ss_pred cCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc-----------------------ceEEEeecccccEEEEEEecCCeE
Q 013717 210 EHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-----------------------RCLESIKAHEDAVNAVAVSAGGTV 266 (437)
Q Consensus 210 ~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~l 266 (437)
.....|..++......+....+|.|..|-.... .+..........|..++......+
T Consensus 176 ~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~ 255 (423)
T 3mvd_K 176 MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTF 255 (423)
T ss_dssp STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEE
T ss_pred cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEE
Confidence 234568888887778888889999999964321 111111122335666665533225
Q ss_pred EEEeCCCeEEEecCCCCcc-------cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc--------c
Q 013717 267 YTGSADRKIRVWAKPFNEK-------RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA--------N 331 (437)
Q Consensus 267 ~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~ 331 (437)
+.-..+|.|..|-...... ..............|..|+.. ..+.++-..||.|+.|-..... .
T Consensus 256 ~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~ 333 (423)
T 3mvd_K 256 MRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKD 333 (423)
T ss_dssp EEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCS
T ss_pred EEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccc
Confidence 5556889999995332110 001111111113456666654 3455666789999999754211 1
Q ss_pred ceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717 332 HMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 372 (437)
..........-...|..++.-....++-..||.|+.|-...
T Consensus 334 ~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 334 VVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp CEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCT
T ss_pred cccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCC
Confidence 01111122222236777877777666678999999997654
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=86.73 E-value=18 Score=32.86 Aligned_cols=105 Identities=10% Similarity=0.127 Sum_probs=60.5
Q ss_pred CCcEEEEEeCC-CeEEEEECCC-cEEEEECCCcceEE--Eeec------ccccEEEEEEec----CCeEEEEeC------
Q 013717 212 GDAVTGLAVNN-GLIYSVSWDK-SLKIWRASDLRCLE--SIKA------HEDAVNAVAVSA----GGTVYTGSA------ 271 (437)
Q Consensus 212 ~~~v~~~~~~~-~~l~~~~~dg-~i~iwd~~~~~~~~--~~~~------~~~~v~~~~~~~----~~~l~~~~~------ 271 (437)
-.....|++.+ ..|+++...+ .|++++..+++... .+.. ....+..|+++| ++.|.+...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34567999988 5566666665 69888865554322 2211 245678999999 455444432
Q ss_pred -------CCeEEEecCCCCcc---cce-eeEEeeC-ccccEEEEEEccCCCEEEEEe
Q 013717 272 -------DRKIRVWAKPFNEK---RHA-LIATLEK-HKSAVNALALSDDGTVLFSGA 316 (437)
Q Consensus 272 -------dg~v~iwd~~~~~~---~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 316 (437)
...|.-|++..+.. ..+ ++..+.. .......|+|.|||++.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 23555555432211 111 2222221 123478999999998777644
No 349
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=86.70 E-value=16 Score=32.29 Aligned_cols=253 Identities=15% Similarity=0.126 Sum_probs=129.6
Q ss_pred cEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC--
Q 013717 144 SVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN-- 221 (437)
Q Consensus 144 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 221 (437)
.|..|+......+.-..||.|..|-......+-.-.... ... ...+-......+..+++.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~---------------~~~---p~~v~~~~~~~~~~v~i~~G 115 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTES---------------VST---PTLLESIQHVFIKKVAVNSG 115 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCC---------------EEE---EEECGGGTTSCEEEEEECTT
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCC---------------ccC---CEEcccccCCceeEEEECcC
Confidence 466666666667777889999999765432111100000 000 000000122234444443
Q ss_pred CCeEEEEECCCcEEEEECCCc-----------ceEEEeec-ccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcc----
Q 013717 222 NGLIYSVSWDKSLKIWRASDL-----------RCLESIKA-HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEK---- 285 (437)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---- 285 (437)
....+....||.|..|-.... .....+.. ....|..++.. ....++...+|.|..|-.....+
T Consensus 116 ~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G-~~hs~alt~~G~v~~wG~n~~GqLG~~ 194 (389)
T 3kci_A 116 GKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG-GAHSACVTAAGDLYTWGKGRYGRLGHS 194 (389)
T ss_dssp CSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-SSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC-cCeEEEEeCCCeEEEeCCCCCCCcCCC
Confidence 367777789999999965321 01111111 12256666654 22355567799999995321110
Q ss_pred --cce-eeEEee-CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc-------eEEeeeecc-cccceEEEEeeC
Q 013717 286 --RHA-LIATLE-KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH-------MVVTGALRG-HGKAILCLINVA 353 (437)
Q Consensus 286 --~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~-~~~~i~~~~~~~ 353 (437)
... ....+. .....|..++......+.++-..||.|+.|-.....+. ......... ....|..++.-.
T Consensus 195 ~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~ 274 (389)
T 3kci_A 195 DSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS 274 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET
T ss_pred CCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC
Confidence 000 011111 12235667766543356677778999999975431110 011111111 123467777777
Q ss_pred CEEEEEeCCCcEEEeeCCCCCC---------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 354 GLLMSGSADRTVRIWQRGSDGR---------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 354 ~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
...++-..||.|+.|-.....+ ..+..........|..|+.-.. ..+....||.|+.|=-..
T Consensus 275 ~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~-------h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 275 QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSL-------HCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS-------EEEEEETTCCEEEEECCT
T ss_pred CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccC-------eEEEECCCCCEEEeeCCC
Confidence 7777778999999997543110 0111111112235667665443 355567899999997653
No 350
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=86.59 E-value=16 Score=31.93 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=47.3
Q ss_pred cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE----EeeCccccEEEEEEccC---CCEEEEEeC------
Q 013717 252 EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA----TLEKHKSAVNALALSDD---GTVLFSGAC------ 317 (437)
Q Consensus 252 ~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~------ 317 (437)
-.....|+|.|+|+ ++++...|.|++++..... ...+. ...........|+++|+ +..|+....
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~--~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGL--SAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEE--CCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCce--eeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 34578999999999 9999999999999743211 01111 11122456789999996 445554432
Q ss_pred --CCcEEEEECCC
Q 013717 318 --DRSILVWDRED 328 (437)
Q Consensus 318 --dg~i~i~d~~~ 328 (437)
...|..|++..
T Consensus 95 ~~~~~v~r~~~~~ 107 (353)
T 2g8s_A 95 KAGTAVGYGRLSD 107 (353)
T ss_dssp CEEEEEEEEEECT
T ss_pred CceeEEEEEEECC
Confidence 23566677654
No 351
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=85.88 E-value=19 Score=32.27 Aligned_cols=253 Identities=8% Similarity=0.027 Sum_probs=133.0
Q ss_pred ccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC
Q 013717 143 GSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN 222 (437)
Q Consensus 143 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 222 (437)
..|..|+......+.-..||.|..|-......+-.-.......... ........|..++...
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P------------------~~v~~~~~i~~va~G~ 136 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKP------------------DLIDLPGKALCISAGD 136 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSC------------------EECCCSSCEEEEEECS
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCC------------------eEEcCCCCEEEEEcCc
Confidence 3477777777777777889999999765432211110000000000 0001234677888777
Q ss_pred CeEEEEECCCcEEEEEC--C-Ccce--------EEEee-cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcc-----
Q 013717 223 GLIYSVSWDKSLKIWRA--S-DLRC--------LESIK-AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEK----- 285 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~--~-~~~~--------~~~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----- 285 (437)
...+....||.|..|-. . .+++ ..... .....|..|+.. ....++-..+|.|..|-.....+
T Consensus 137 ~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G-~~hs~alt~~G~v~~wG~n~~GqLG~~~ 215 (423)
T 3mvd_K 137 SHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG-ADHLVILTTAGKVFTVGCAEQGQLGRLS 215 (423)
T ss_dssp SEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC-SSEEEEEETTSCEEEEECCTTSTTSSCC
T ss_pred CeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC-CCeEEEEecCCeEEEeeCCcCCccCCCc
Confidence 77777889999999985 2 2221 01111 123456666653 22355567889999994321110
Q ss_pred --------------cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc-------eEEeeeeccccc
Q 013717 286 --------------RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH-------MVVTGALRGHGK 344 (437)
Q Consensus 286 --------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~~ 344 (437)
...+..........|..++.... ..++.-..+|.|+.|-.....+. ............
T Consensus 216 ~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~ 294 (423)
T 3mvd_K 216 ERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELK 294 (423)
T ss_dssp TTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCC
T ss_pred ccccccccccccccccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCC
Confidence 00111111122334556555422 22333357899999975431110 001111111134
Q ss_pred ceEEEEeeCCEEEEEeCCCcEEEeeCCCCC---------CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcE
Q 013717 345 AILCLINVAGLLMSGSADRTVRIWQRGSDG---------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI 415 (437)
Q Consensus 345 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i 415 (437)
.|..++.-....+.-..||.|+.|-..... .......+..-...|..|+.-.. ..+.-..||.|
T Consensus 295 ~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~-------hs~alt~~G~v 367 (423)
T 3mvd_K 295 DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV-------CSYAVTIDGKL 367 (423)
T ss_dssp SEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT-------EEEEEETTSCE
T ss_pred CeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC-------eEEEEcCCCCE
Confidence 567777666777777889999999653211 01112222222336888876654 34445789999
Q ss_pred EEEeecc
Q 013717 416 RAWQVSV 422 (437)
Q Consensus 416 ~iw~~~~ 422 (437)
+.|=...
T Consensus 368 ~~wG~n~ 374 (423)
T 3mvd_K 368 YSWGSGV 374 (423)
T ss_dssp EEEECCT
T ss_pred EEECCCC
Confidence 9997543
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.88 E-value=3.3 Score=38.42 Aligned_cols=76 Identities=13% Similarity=0.088 Sum_probs=47.8
Q ss_pred ccccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCcc---------ceEEeeeecccccceEEEEeeCC--EEEEEeCCC
Q 013717 296 HKSAVNALALSDDGTVLFSGAC-DRSILVWDREDSAN---------HMVVTGALRGHGKAILCLINVAG--LLMSGSADR 363 (437)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg 363 (437)
-......+.++|||+++++++. +.++.++|++.... ...+..... -....+...|+++ ...+---|.
T Consensus 321 ~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 321 VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTT
T ss_pred CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecc
Confidence 3445677899999999887664 88999999974110 011111111 1223355556554 455556799
Q ss_pred cEEEeeCCC
Q 013717 364 TVRIWQRGS 372 (437)
Q Consensus 364 ~i~iwd~~~ 372 (437)
.|.-|++..
T Consensus 400 qvvkWni~~ 408 (638)
T 3sbq_A 400 QVVKWNMEE 408 (638)
T ss_dssp EEEEEEHHH
T ss_pred eEEEEeccH
Confidence 999999864
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.63 E-value=36 Score=34.46 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=29.6
Q ss_pred cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee
Q 013717 214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK 249 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (437)
.+.+++..+ .++++.+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 455665554 799999999999999999999988764
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.68 E-value=33 Score=31.25 Aligned_cols=55 Identities=7% Similarity=0.078 Sum_probs=36.5
Q ss_pred ccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEee---------CccccEEEEEEccC
Q 013717 253 DAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLE---------KHKSAVNALALSDD 308 (437)
Q Consensus 253 ~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~ 308 (437)
..-+.|+|.|++. ++++...|.|++++...... ...+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4567899999985 88889999999997532211 11111111 11456889999996
No 355
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=78.95 E-value=35 Score=30.37 Aligned_cols=293 Identities=12% Similarity=0.088 Sum_probs=149.5
Q ss_pred CCeEEEEeeCCEEEEEecC-eEEEEeCCCC-c--------eeeeeccccCCCCcccEEEEEEeCCeEEEEecC-CeEEEE
Q 013717 99 LPIGCIAVHHNFLYAASSH-EINVYDRTGT-T--------WTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQD-CKIRVW 167 (437)
Q Consensus 99 ~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~-~--------~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~d-g~i~iw 167 (437)
..|..++.-....+.-..+ .|..|-.... + ......+.. .....|..|+.-.+..+.-..| +.|..|
T Consensus 16 ~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~--l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA--LDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGG--GTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred cceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecc--cCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 4566666655555555556 8888865431 0 011111111 1234677887777774444455 599999
Q ss_pred eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc-c---
Q 013717 168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-R--- 243 (437)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~--- 243 (437)
-......+-.-... .... ...+..-....|..++....+.+....||.|..|-.... +
T Consensus 94 G~n~~GqLG~g~~~---------------~~~~---p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~ 155 (406)
T 4d9s_A 94 GWGDFGRLGHGNSS---------------DLFT---PLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGL 155 (406)
T ss_dssp ECCGGGTTCSSSCC---------------CEEE---EEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred cCCCCcCCCCCCCC---------------cccc---ceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCC
Confidence 75533211100000 0000 000001133468888887777888889999999975421 1
Q ss_pred -----e--EEEeec-ccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcc------cceee-EEee-CccccEEEEEEcc
Q 013717 244 -----C--LESIKA-HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEK------RHALI-ATLE-KHKSAVNALALSD 307 (437)
Q Consensus 244 -----~--~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------~~~~~-~~~~-~~~~~i~~~~~~~ 307 (437)
. ...+.. ....|..++... ...++-..+|.|..|-...... ..... ..+. .....|..++..
T Consensus 156 g~~~~~~~p~~v~~~~~~~i~~va~G~-~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G- 233 (406)
T 4d9s_A 156 GDTEDSLVPQKIQAFEGIRIKMVAAGA-EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG- 233 (406)
T ss_dssp SSCCCEEEEEECGGGTTCCEEEEEECS-SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC-
T ss_pred CCCCCcccceEecccCCCcEEEEecCC-CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC-
Confidence 0 111111 123566666542 2355557889999995321110 00111 1111 122456666654
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccc-------eEEeeeec-ccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCC----
Q 013717 308 DGTVLFSGACDRSILVWDREDSANH-------MVVTGALR-GHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGR---- 375 (437)
Q Consensus 308 ~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~-~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---- 375 (437)
..+.++-..+|.|+.|-.....+. ........ -....|..++.-....++-..||.|+.|-.....+
T Consensus 234 -~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g 312 (406)
T 4d9s_A 234 -WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 312 (406)
T ss_dssp -SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSS
T ss_pred -CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCC
Confidence 335566678999999975432111 01111111 11234666766666777778999999997543221
Q ss_pred -----eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 376 -----FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 376 -----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
..+..........|..|+.-.. ..+.-..||.|+.|=-.
T Consensus 313 ~~~~~~~p~~v~~~~~~~v~~va~G~~-------hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 313 NNLDQCSPVQVRFPDDQKVVQVSCGWR-------HTLAVTERNNVFAWGRG 356 (406)
T ss_dssp SSSCEEEEEEECCGGGCCEEEEEECSS-------EEEEEETTSCEEEEECC
T ss_pred CCCCCccCEEEeccCCCcEEEEEeCCC-------eEEEEeCCCCEEEecCC
Confidence 1111111112235667665443 35555678999999754
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.65 E-value=59 Score=32.87 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=25.7
Q ss_pred CeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 388 PVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 388 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
.+.+++..++.. ++++-+.|+++|+|++.++.
T Consensus 237 ~~~~~~~~~~~~-----~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 237 TIISMIFLSTYN-----VLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp CEEEEEEETTTT-----EEEEEETTCEEEEEETTTTE
T ss_pred eEEEEeecCCCc-----EEEEEECCCEEEEEECCCCC
Confidence 466666666553 89999999999999998875
No 357
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=78.29 E-value=18 Score=34.91 Aligned_cols=38 Identities=11% Similarity=0.285 Sum_probs=32.6
Q ss_pred CcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeec
Q 013717 213 DAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKA 250 (437)
Q Consensus 213 ~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 250 (437)
..|.++.+...++++-+.|.++|+||+.+++++.+..-
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45777777779999999999999999999998887653
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=76.45 E-value=45 Score=30.35 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=23.6
Q ss_pred ccEEEEEEccCCC-EEEEEeCCCcEEEEECC
Q 013717 298 SAVNALALSDDGT-VLFSGACDRSILVWDRE 327 (437)
Q Consensus 298 ~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~ 327 (437)
.....|+|.|||. .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4568999999996 45556788999999754
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=74.15 E-value=42 Score=28.86 Aligned_cols=231 Identities=11% Similarity=0.121 Sum_probs=115.2
Q ss_pred ccccccCCCceeEEecCCCc--------ceeeeecCccCCeEEEEee--CC-EEEEEecC---eEEEEeCCCC----cee
Q 013717 69 PSLQKLSPDETINFSSASHL--------CINSVQLGHKLPIGCIAVH--HN-FLYAASSH---EINVYDRTGT----TWT 130 (437)
Q Consensus 69 ~~~~s~s~dg~i~~~~~~~~--------~~~~~~~~h~~~V~~l~~~--~~-~l~s~~~d---~v~vwd~~~~----~~~ 130 (437)
+.++.++.+|-|.--.+... ...-..+...+.+..+... .+ +|+..+.+ .+.+|++... ...
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 45566677777664432110 1111112334445444433 33 44444444 4555666643 122
Q ss_pred eeeccccCCCCcccEEEEEEeC----C-eEEEEecCCeEEEEeCCCCccccc--ccccCccccceeeecCCCCeeEEeec
Q 013717 131 SINTFNDNDSSSGSVKSVTFCD----G-KIFTAHQDCKIRVWQLTPTKHHKL--KTTLPTVNDRLLRFMLPNSYVTVRRH 203 (437)
Q Consensus 131 ~~~~~~~~~~h~~~v~~l~~~~----~-~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (437)
.+..+..+. ....|.++...+ + .++.++.+|.++.-.+........ ...+
T Consensus 84 ~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i---------------------- 140 (327)
T 3uc1_A 84 HVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAV---------------------- 140 (327)
T ss_dssp EHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESC----------------------
T ss_pred EHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEE----------------------
Confidence 322222223 234555554432 2 399999999999988764322111 0000
Q ss_pred cceeeecCCCcEEEE-EeCC-CeEEEEECCCcEEEEECC--Ccce-------E--EEeecccccEEEEEEecCC-eEEEE
Q 013717 204 KKKLWIEHGDAVTGL-AVNN-GLIYSVSWDKSLKIWRAS--DLRC-------L--ESIKAHEDAVNAVAVSAGG-TVYTG 269 (437)
Q Consensus 204 ~~~~~~~~~~~v~~~-~~~~-~~l~~~~~dg~i~iwd~~--~~~~-------~--~~~~~~~~~v~~~~~~~~~-~l~~~ 269 (437)
.+. ..+.+..+ .... ..++..+..|.+..+... .-.. + ..+. ....|.++...+++ .++..
T Consensus 141 ---~lk-e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~ 215 (327)
T 3uc1_A 141 ---NLR-DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVA 215 (327)
T ss_dssp ---BCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEE
T ss_pred ---EEC-CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEE
Confidence 001 22334333 3333 788889999999888876 3211 1 1122 34557666655544 49999
Q ss_pred eCCCeEEEecCCCCc---c--cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717 270 SADRKIRVWAKPFNE---K--RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327 (437)
Q Consensus 270 ~~dg~v~iwd~~~~~---~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (437)
+..|.++.-.+..-. . .......+......+..+....+...++..+.+|.+.-++..
T Consensus 216 T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 216 TSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp ETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred eCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 999999887543211 1 111111222212334444443344566666777777777654
No 360
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=70.58 E-value=86 Score=30.91 Aligned_cols=145 Identities=8% Similarity=0.074 Sum_probs=71.4
Q ss_pred cccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeC----ccccEEEEEEccC-CCEEEEEeCCCc----
Q 013717 252 EDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEK----HKSAVNALALSDD-GTVLFSGACDRS---- 320 (437)
Q Consensus 252 ~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~~dg~---- 320 (437)
.+.|.+|+++|... +++++..+.|...+= ....++.+..... ....+.+|+++|. .+.++++..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D--gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA--GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET--TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC--CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 46899999998643 777777776655431 3333443221111 1346999999984 344544433211
Q ss_pred EEEEECCCCccceEEeee-ec--c---cccceEEEEee---CCEEEEEeCCCcEEEeeCCCCCCeeeeeeec---CCCCC
Q 013717 321 ILVWDREDSANHMVVTGA-LR--G---HGKAILCLINV---AGLLMSGSADRTVRIWQRGSDGRFGCLAVLE---GHTKP 388 (437)
Q Consensus 321 i~i~d~~~~~~~~~~~~~-~~--~---~~~~i~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~ 388 (437)
-.||-..++...+..... +. + ....+..+..+ ++.++.+...+.|. .....++.+..+..+. .....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCC
Confidence 344444443333333221 11 0 00112234443 34666666444332 2233345555443321 11245
Q ss_pred eeEEEEEccCC
Q 013717 389 VKSLTAVTEEG 399 (437)
Q Consensus 389 v~~l~~~~~~~ 399 (437)
+..|.+.|..+
T Consensus 171 ~~~i~~~p~~~ 181 (789)
T 1sqj_A 171 YTSVIFDPERN 181 (789)
T ss_dssp EEEEEECTTST
T ss_pred eEEEEECCCCC
Confidence 78888888654
No 361
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=70.24 E-value=57 Score=28.70 Aligned_cols=181 Identities=7% Similarity=0.009 Sum_probs=88.1
Q ss_pred CeEEEEECCCcEEEEECCC-cceEEEe--ecccccEEEEEEec--CCeEEEEeCCC----eEEEecCCCCcccceeeEE-
Q 013717 223 GLIYSVSWDKSLKIWRASD-LRCLESI--KAHEDAVNAVAVSA--GGTVYTGSADR----KIRVWAKPFNEKRHALIAT- 292 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~-~~~~~~~--~~~~~~v~~~~~~~--~~~l~~~~~dg----~v~iwd~~~~~~~~~~~~~- 292 (437)
..|++|...| +.+++... ++.-..+ ......|.+|++.| .+.+.+++..| .|...+ .....++.+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~--D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD--DGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES--STTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC--CCCCCceECCcc
Confidence 5788888777 55555432 2222211 12345799999998 55577776665 444432 12333333221
Q ss_pred --eeC--------ccccEEEEEEcc-C-CCEEEEEeCCCcEEEEECCCCccceEEeeeec----------------cccc
Q 013717 293 --LEK--------HKSAVNALALSD-D-GTVLFSGACDRSILVWDREDSANHMVVTGALR----------------GHGK 344 (437)
Q Consensus 293 --~~~--------~~~~i~~~~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------------~~~~ 344 (437)
+.. ....|.++++.| + ...|+++...+.|... .++...+....... ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCC
Confidence 111 113578899987 2 4556666656655444 33223332221110 0123
Q ss_pred ceEEEEeeC---CEEEEEeCCCcEEEeeCCCCCCeeeeee-ecC-C--------CCCeeEEEEEccCCCCceEEEEEecC
Q 013717 345 AILCLINVA---GLLMSGSADRTVRIWQRGSDGRFGCLAV-LEG-H--------TKPVKSLTAVTEEGQNGVVSVFSGSL 411 (437)
Q Consensus 345 ~i~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~-h--------~~~v~~l~~~~~~~~~~~~~l~s~~~ 411 (437)
.+.++.+++ +.|+.+..++.|...+- .++.+..+.. +.. + ...+.+|++.|..+. .|+.+..
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~----~l~vg~~ 252 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPD----ILYQQNH 252 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTT----EEEEEET
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCC----EEEEEcC
Confidence 466777663 45555655554444322 2333333321 111 0 134888998886433 4555554
Q ss_pred CC
Q 013717 412 DG 413 (437)
Q Consensus 412 dg 413 (437)
.|
T Consensus 253 ~g 254 (394)
T 3b7f_A 253 CG 254 (394)
T ss_dssp TE
T ss_pred Ce
Confidence 44
No 362
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=69.34 E-value=60 Score=28.61 Aligned_cols=138 Identities=9% Similarity=0.108 Sum_probs=78.1
Q ss_pred cEEEEECCCc--ceEEEeec------ccccEEEEEEe---cC-----Ce-EEEEeCCCeEEEecCCCCcccceeeE----
Q 013717 233 SLKIWRASDL--RCLESIKA------HEDAVNAVAVS---AG-----GT-VYTGSADRKIRVWAKPFNEKRHALIA---- 291 (437)
Q Consensus 233 ~i~iwd~~~~--~~~~~~~~------~~~~v~~~~~~---~~-----~~-l~~~~~dg~v~iwd~~~~~~~~~~~~---- 291 (437)
+|.+||+.+. +.++.+.- ....+..+++. |+ +. .++=...+.|.++|+..+.. +....
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCCc
Confidence 5788999998 88887752 23468888887 22 23 45555678899999985442 11110
Q ss_pred -------EeeCc----cccEEEEEEccC----CCEEEEEeCCC-cEEEEE---CCCCc--cceEEeeeecccccceEEEE
Q 013717 292 -------TLEKH----KSAVNALALSDD----GTVLFSGACDR-SILVWD---REDSA--NHMVVTGALRGHGKAILCLI 350 (437)
Q Consensus 292 -------~~~~~----~~~i~~~~~~~~----~~~l~~~~~dg-~i~i~d---~~~~~--~~~~~~~~~~~~~~~i~~~~ 350 (437)
...+. ...+..|+++|+ ++.|.-....+ .++-.. ++... ...+..+. ++....-..+.
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEE
Confidence 11111 246889999998 77777665554 333332 12211 11122222 11112223333
Q ss_pred ee---CCEEEEEeCCCcEEEeeCCC
Q 013717 351 NV---AGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 351 ~~---~~~l~~~~~dg~i~iwd~~~ 372 (437)
.+ |.++++--..+.|..|+...
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCC
Confidence 33 44666667778899999875
No 363
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=65.67 E-value=73 Score=28.26 Aligned_cols=279 Identities=11% Similarity=0.055 Sum_probs=144.1
Q ss_pred ccccCCCceeEEecCCCcce-----------eeeec-CccCCeEEEEeeCCE-EEEEecC-eEEEEeCCCC------c--
Q 013717 71 LQKLSPDETINFSSASHLCI-----------NSVQL-GHKLPIGCIAVHHNF-LYAASSH-EINVYDRTGT------T-- 128 (437)
Q Consensus 71 ~~s~s~dg~i~~~~~~~~~~-----------~~~~~-~h~~~V~~l~~~~~~-l~s~~~d-~v~vwd~~~~------~-- 128 (437)
.+.+..+|.+..|-.+...+ +.... -....|..++.-..+ ++....+ .|..|-.... .
T Consensus 28 s~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~ 107 (406)
T 4d9s_A 28 SVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSS 107 (406)
T ss_dssp EEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCC
T ss_pred EEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCC
Confidence 33456678887776533221 11111 123467777766444 4444455 8898965431 0
Q ss_pred -eeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecccee
Q 013717 129 -WTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKL 207 (437)
Q Consensus 129 -~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (437)
......+. ......|..|+.-....+.-..||.|..|-......+-.-.... ... ...+
T Consensus 108 ~~~~p~~v~--~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~---------------~~~---p~~v 167 (406)
T 4d9s_A 108 DLFTPLPIK--ALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED---------------SLV---PQKI 167 (406)
T ss_dssp CEEEEEECG--GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC---------------EEE---EEEC
T ss_pred ccccceEec--ccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCC---------------ccc---ceEe
Confidence 00111111 11234678888777777777889999999765432211110000 000 0000
Q ss_pred eecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc-c---------eE-EEee-cccccEEEEEEecCCeEEEEeCCCeE
Q 013717 208 WIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-R---------CL-ESIK-AHEDAVNAVAVSAGGTVYTGSADRKI 275 (437)
Q Consensus 208 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~---------~~-~~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v 275 (437)
..-....|..++....+.+....+|.|..|-.... + .. ..+. .....|..++... ...++-..+|.|
T Consensus 168 ~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~-~ht~~l~~~G~v 246 (406)
T 4d9s_A 168 QAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW-RHTISVSYSGAL 246 (406)
T ss_dssp GGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS-SEEEEEETTCCE
T ss_pred cccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC-CcEEEEcCCCCE
Confidence 01123468888887777888889999999964321 1 11 1111 1124566665432 224555678999
Q ss_pred EEecCCCCccc------ce-eeEEeeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc--------eEEeeee
Q 013717 276 RVWAKPFNEKR------HA-LIATLEK-HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH--------MVVTGAL 339 (437)
Q Consensus 276 ~iwd~~~~~~~------~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~~~ 339 (437)
..|-.....+. .. ....+.. ....|..|+.. ..+.++-..||.|+.|-.....+. .......
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 324 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 324 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEEC
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEe
Confidence 99953221110 00 1111111 12346666554 345556678999999975432111 1111111
Q ss_pred cccccceEEEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717 340 RGHGKAILCLINVAGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 340 ~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 372 (437)
......|..++.-....++-..+|.|+.|-...
T Consensus 325 ~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 325 FPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp CGGGCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred ccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCC
Confidence 112345677776667777778999999997654
No 364
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=57.40 E-value=87 Score=26.43 Aligned_cols=125 Identities=6% Similarity=0.066 Sum_probs=63.3
Q ss_pred CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEe--CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC
Q 013717 232 KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGS--ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD 308 (437)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 308 (437)
..|+..++...+... +.. ... ..+++++. |+-.. .++.-.||.+..+... ...+..+.. .+++++
T Consensus 88 ~~Iy~i~~dg~~~~~-l~~--~~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~---~~~lt~~~~----~~~~~~ 155 (302)
T 3s25_A 88 NSLCRIKRNGHGSTV-LDP--DPC--IYASLIGNYIYYLHYDTQTATSLYRIRIDGEE---KKKIKNHYL----FTCNTS 155 (302)
T ss_dssp EEEEEEETTSCCCEE-EEC--SCE--EEEEEETTEEEEEEESSSSCEEEEEEETTSCC---CEEEESSCC----CCSEEE
T ss_pred CeEEEEeCCCCcceE-eec--CCc--cEEEEeCCEEEEEeecCCCCceEEEEECCCCC---eEEEeCCCc----eEeeEE
Confidence 467778877665333 221 122 25566666 55554 3444444443323222 222322322 456788
Q ss_pred CCEEEEEeC-CCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCC--CcEEEeeCCCCC
Q 013717 309 GTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSAD--RTVRIWQRGSDG 374 (437)
Q Consensus 309 ~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d--g~i~iwd~~~~~ 374 (437)
++.|+-.+. ...|.+.++....... + ..+.. . ..+.+.+.+|+-...+ ..|..-++....
T Consensus 156 g~~iy~t~~g~~~Iy~~~l~g~~~~~-l---~~~~~-~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 156 DRYFYYNNPKNGQLYRYDTASQSEAL-F---YDCNC-Y-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TTEEEEECTTTCCEEEEETTTTEEEE-E---ECSCE-E-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CCEEEEEeCCCceEEEEECCCCCEEE-E---eCCCc-c-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 888876654 6788888887654322 2 11111 1 2244577766655443 245555555433
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=57.27 E-value=37 Score=32.76 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=29.0
Q ss_pred CCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 99 LPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 99 ~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
..|.|+.+...+|++-+.| ++|+|++.++.......+
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3577777778899999999 999999999754444444
No 366
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=50.26 E-value=1.5e+02 Score=26.94 Aligned_cols=200 Identities=13% Similarity=0.088 Sum_probs=107.4
Q ss_pred CCcEEEEEeCCCeEEEEECCCcEEEEECC---Ccce------------EEEeec-ccccEEEEEEecCCeEEEEeCCCeE
Q 013717 212 GDAVTGLAVNNGLIYSVSWDKSLKIWRAS---DLRC------------LESIKA-HEDAVNAVAVSAGGTVYTGSADRKI 275 (437)
Q Consensus 212 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~------------~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~v 275 (437)
...|..++......+....+|.|..|-.. .+++ ...+.. ....|..|+... ...++-..+|.|
T Consensus 147 ~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~-~hs~alt~~G~v 225 (473)
T 3of7_A 147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK-DHILFLDEEGMV 225 (473)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECS-SEEEEEETTSCE
T ss_pred CCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecC-CeEEEEeCCCeE
Confidence 45788888888777888899999999751 1111 011111 122477776542 235556789999
Q ss_pred EEecCCCCcccc----------eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc-----------eE
Q 013717 276 RVWAKPFNEKRH----------ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH-----------MV 334 (437)
Q Consensus 276 ~iwd~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~ 334 (437)
..|-.....+.. ...... .....|..|+.. ..+.++-..+|.|+.|-.....+. ..
T Consensus 226 ~~wG~n~~GqLG~~~~~~~~~~~~~p~~-~~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~ 302 (473)
T 3of7_A 226 FAWGNGQQNQLGRKVMERFRLKTLDPRP-FGLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVT 302 (473)
T ss_dssp EEEECCTTSTTSSCCCGGGTTTTCSCEE-CSCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEE
T ss_pred EEEeCCCCCCCCCCccccccccccCcee-cCCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceee
Confidence 999543211100 000000 011456666654 345666668999999975432110 00
Q ss_pred Eeeeec-ccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCee---------------------eeeeecCCCCCeeEE
Q 013717 335 VTGALR-GHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFG---------------------CLAVLEGHTKPVKSL 392 (437)
Q Consensus 335 ~~~~~~-~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------~~~~~~~h~~~v~~l 392 (437)
....+. .....|..++.....-++-..||.|+.|-.....+.. ...........|..|
T Consensus 303 ~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~I 382 (473)
T 3of7_A 303 KPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSV 382 (473)
T ss_dssp EEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEE
T ss_pred ccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEE
Confidence 111111 1124567777666666667889999999754322110 011111111256666
Q ss_pred EEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
+.-.. ..+.-..||.|+.|=...
T Consensus 383 a~G~~-------hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 383 AAGSH-------HSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp EECSS-------EEEEEETTSCEEEEECCT
T ss_pred EeCCC-------eEEEEeCCCcEEEeeCCC
Confidence 65443 345557899999997543
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.74 E-value=55 Score=33.96 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=24.8
Q ss_pred CeEEEEECCCcEEEEECCCcceEEEee
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCLESIK 249 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (437)
.++++.+.|+++|+|++.+++++.+..
T Consensus 250 ~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 250 NVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred cEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 889999999999999999999988764
No 368
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=48.63 E-value=1.4e+02 Score=26.34 Aligned_cols=251 Identities=10% Similarity=0.071 Sum_probs=131.7
Q ss_pred ccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC
Q 013717 143 GSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN 222 (437)
Q Consensus 143 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 222 (437)
..|..|+......+.-..||.|..|-......+-.-........ .| ..+ .-...|..++...
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~------~P----------~~v--~l~~~i~~va~G~ 120 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEM------VP----------GKV--ELQEKVVQVSAGD 120 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGG------SC----------EEC--CCCSCEEEEEECS
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCcccc------CC----------eEe--cCCCcEEEEecCC
Confidence 56777777666666677899999997654322111100000000 00 000 1123678888877
Q ss_pred CeEEEEECCCcEEEEEC--C-Ccce-----------EEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCccc--
Q 013717 223 GLIYSVSWDKSLKIWRA--S-DLRC-----------LESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKR-- 286 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~--~-~~~~-----------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-- 286 (437)
...+....||.|..|-. . .+++ ...+ .....|..|+... ...+.-..+|.|..|-.....+.
T Consensus 121 ~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G~-~hs~alt~~G~v~~wG~n~~GqLG~ 198 (413)
T 1a12_A 121 SHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASGN-DHLVMLTADGDLYTLGCGEQGQLGR 198 (413)
T ss_dssp SEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEECS-SEEEEEETTSCEEEEECCTTSTTCS
T ss_pred CeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEecC-ceEEEEcCCCCEEEeeCCCCCccCC
Confidence 77788889999999974 1 1111 0111 1234566666532 23555567899999954321110
Q ss_pred -----------------ceee-EEeeC----ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc--------eEE-
Q 013717 287 -----------------HALI-ATLEK----HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH--------MVV- 335 (437)
Q Consensus 287 -----------------~~~~-~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~- 335 (437)
..+. ..+.. ....|..|+...+ +.++-..||.|+.|-.....+. ...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~--hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~ 276 (413)
T 1a12_A 199 VPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY--FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQ 276 (413)
T ss_dssp CGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETT--EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEE
T ss_pred CccccccccccccccccccCceEeeccccccCCccEEEEEeCCC--EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccE
Confidence 0010 01100 2345666666533 4555568999999976532111 111
Q ss_pred -eeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC--------CeeeeeeecCCCCCeeEEEEEccCCCCceEEE
Q 013717 336 -TGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG--------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSV 406 (437)
Q Consensus 336 -~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l 406 (437)
...+......|..++......++-..||.|+.|-..... ........-.....|..|+.-.. ..
T Consensus 277 ~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~-------hs 349 (413)
T 1a12_A 277 NLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGAS-------VG 349 (413)
T ss_dssp ECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSS-------EE
T ss_pred EchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcc-------eE
Confidence 111111113467777666677777889999999653211 00111111112236777765443 35
Q ss_pred EEecCCCcEEEEeecc
Q 013717 407 FSGSLDGEIRAWQVSV 422 (437)
Q Consensus 407 ~s~~~dg~i~iw~~~~ 422 (437)
+.-..||.|+.|=...
T Consensus 350 ~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 350 YAVTKDGRVFAWGMGT 365 (413)
T ss_dssp EEEETTSCEEEEECCT
T ss_pred EEEeCCCCEEEecCCC
Confidence 5556799999997543
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.31 E-value=46 Score=34.51 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=24.8
Q ss_pred CeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 388 PVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 388 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
.+.+++..++.. ++++-+.|+++|+|++.++.
T Consensus 239 ~~vs~~~~~~~~-----~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 239 TIISMIFLSTYN-----VLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp CBSCCEEETTTT-----EEEEEBTTCEEEEEETTTTE
T ss_pred eeEEeeccCCcc-----EEEEEeCCCEEEEEECCCCC
Confidence 445555555543 89999999999999998875
No 370
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=45.57 E-value=1.4e+02 Score=28.12 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=37.1
Q ss_pred cEEEEEEecCCeEEEEeCC-------------CeEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEEe
Q 013717 254 AVNAVAVSAGGTVYTGSAD-------------RKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSGA 316 (437)
Q Consensus 254 ~v~~~~~~~~~~l~~~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 316 (437)
....|.|.++|.|..+... ..|..++...+ ++...+.. ....++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG----el~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG----EIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC----CEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC----eEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4667899999986664432 14555544322 23333332 346789999999999887653
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=44.68 E-value=1.4e+02 Score=25.18 Aligned_cols=191 Identities=16% Similarity=0.132 Sum_probs=100.7
Q ss_pred CeEEEEECCCcEEEEECCCcceEE---------EeecccccEEEEE-EecCCeEEEEeCCCeEEEe---cCCCCcc--cc
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCLE---------SIKAHEDAVNAVA-VSAGGTVYTGSADRKIRVW---AKPFNEK--RH 287 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~-~~~~~~l~~~~~dg~v~iw---d~~~~~~--~~ 287 (437)
..+++.+.+|.|+--.+...+... .++. .+.+..+. .+....++..+..|.+.-+ ++..... .+
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp EEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence 457788899999887775533211 1222 23343333 3444458888888886554 4432221 12
Q ss_pred eeeE---EeeCccccEEEEEEc---cCCCEEEEEeCCCcEEEEECCCCcc---ceEEeeeecccccceEEEE-eeC-CEE
Q 013717 288 ALIA---TLEKHKSAVNALALS---DDGTVLFSGACDRSILVWDREDSAN---HMVVTGALRGHGKAILCLI-NVA-GLL 356 (437)
Q Consensus 288 ~~~~---~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~-~~~-~~l 356 (437)
..+. .+. ....|..+..- .++.+++..+.+|.++-..+..-.. .......+..+ ..+..+. .++ +.+
T Consensus 83 ~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i 160 (307)
T 1zi0_A 83 RPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEV 160 (307)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEE
T ss_pred eEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEE
Confidence 2111 122 23445555432 3566888999999999987753211 11111122233 3343333 233 478
Q ss_pred EEEeCCCcEEEeeCCCCCC------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 357 MSGSADRTVRIWQRGSDGR------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 357 ~~~~~dg~i~iwd~~~~~~------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
+..+.+|.+..++...-.. ......+. ....|.++....++. .++..+..|.++-.++..
T Consensus 161 ~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~-----~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 161 MLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDG-----AILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSC-----EEEEEETTSEEEEECGGG
T ss_pred EEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCC-----EEEEEEcCCceEEEEHHH
Confidence 8888999888887643210 01112222 234566665443332 588888899999888754
No 372
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=44.55 E-value=1.5e+02 Score=25.21 Aligned_cols=191 Identities=12% Similarity=0.077 Sum_probs=104.5
Q ss_pred CeEEEEECCCcEEEEECCCcceE-------E--EeecccccEEEEEE-ecCCeEEEEeCCCeEEEecCC---CCc--ccc
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCL-------E--SIKAHEDAVNAVAV-SAGGTVYTGSADRKIRVWAKP---FNE--KRH 287 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~-------~--~~~~~~~~v~~~~~-~~~~~l~~~~~dg~v~iwd~~---~~~--~~~ 287 (437)
.++++.+.+|.|+-..+...+.. . .++. .+.+..+.. +....++..+..|.++-+... ... ..+
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 56788899999998876543221 1 1222 233444443 344448888889987766432 110 000
Q ss_pred ee---eEEeeCccccEEEEEEcc---CCCEEEEEeCCCcEEEEECCCCcc---ceEEeeeecccccceEEEEe-e-CCEE
Q 013717 288 AL---IATLEKHKSAVNALALSD---DGTVLFSGACDRSILVWDREDSAN---HMVVTGALRGHGKAILCLIN-V-AGLL 356 (437)
Q Consensus 288 ~~---~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~-~-~~~l 356 (437)
.. ...+.. ...|..+...+ +..+|+..+.+|.++...+..-.. .......+.. ...+..+.. + .+.+
T Consensus 88 ~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 88 QNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEE
T ss_pred cChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEE
Confidence 10 111222 23454443332 456788889999999988753211 1111112232 334444333 3 3478
Q ss_pred EEEeCCCcEEEeeCCCCC------CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 357 MSGSADRTVRIWQRGSDG------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 357 ~~~~~dg~i~iwd~~~~~------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
+..+.+|.+..+....-. .......+.. ...|.++....++. .++..+..|..+..+++.
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~-----~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENP-----YLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCS-----EEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCC-----eEEEEECCCceEEEEHHH
Confidence 889999999888765411 1112222332 44566665554332 577888899999888764
No 373
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=44.13 E-value=61 Score=30.17 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=43.4
Q ss_pred cEEEEEEecCC-e--EEEEeCCCeEEEecCCCCcccceeeEEee--CccccEE-EEEEccCCCEEEEEeCCCcEEE
Q 013717 254 AVNAVAVSAGG-T--VYTGSADRKIRVWAKPFNEKRHALIATLE--KHKSAVN-ALALSDDGTVLFSGACDRSILV 323 (437)
Q Consensus 254 ~v~~~~~~~~~-~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i 323 (437)
..++|+....+ . ++.|+.+|.|.-..+.........+..+. ....+|. .|.+++++.+|++++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 46666665433 2 78899999887654432211101222222 2346775 8999999999999987765544
No 374
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=42.74 E-value=1.7e+02 Score=25.52 Aligned_cols=175 Identities=8% Similarity=0.050 Sum_probs=80.6
Q ss_pred CcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeec-----c--------cccEEEEEEecC--CeEEEEeCCCe
Q 013717 213 DAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKA-----H--------EDAVNAVAVSAG--GTVYTGSADRK 274 (437)
Q Consensus 213 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~--------~~~v~~~~~~~~--~~l~~~~~dg~ 274 (437)
..+.+|.+++ +.++.+..++.|...+ ..++.-..+.. + ...+.+|++.|. +.++++...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 4677888875 5566665555444432 22222222210 0 134889999986 4477776555
Q ss_pred EEEecCCCCcccceeeEE-eeC-ccccEEEEEEcc-CCCEEEEEeC-----------CCcEEEEECCCCccceEEeee-e
Q 013717 275 IRVWAKPFNEKRHALIAT-LEK-HKSAVNALALSD-DGTVLFSGAC-----------DRSILVWDREDSANHMVVTGA-L 339 (437)
Q Consensus 275 v~iwd~~~~~~~~~~~~~-~~~-~~~~i~~~~~~~-~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~-~ 339 (437)
|...+- ....++.+.. +.. ....+..+.++| +...|+++.. ++...+|...++...+..... +
T Consensus 255 l~~s~D--~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~gl 332 (394)
T 3b7f_A 255 IYRMDR--REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGL 332 (394)
T ss_dssp EEEEET--TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTS
T ss_pred EEEeCC--CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCC
Confidence 433321 2222222211 110 003356788876 3344554432 333456665554333332211 1
Q ss_pred ccccc----ceEEEEee---CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE
Q 013717 340 RGHGK----AILCLINV---AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV 395 (437)
Q Consensus 340 ~~~~~----~i~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 395 (437)
..... ....++.+ ++.|+.++.++.|..-+ ..++.+.. +..+-..+.+|+|.
T Consensus 333 p~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~---~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 333 PTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA-DEGEHWQC---IASHLPHIYAVQSA 391 (394)
T ss_dssp CCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES-STTSBCEE---EECSCSCEEEEEEE
T ss_pred CCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC-CCCCCceE---cccCCCCeeEEEEe
Confidence 11000 01223333 34566676666554332 22343333 33344567777775
No 375
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=42.37 E-value=1.5e+02 Score=24.64 Aligned_cols=147 Identities=12% Similarity=0.072 Sum_probs=84.0
Q ss_pred CeEEEEECCCcEEEEECCCcc------eEEEeecccccEEEEEEecCC-eEEEEeCCCeEEEecCCC---Cc--ccceee
Q 013717 223 GLIYSVSWDKSLKIWRASDLR------CLESIKAHEDAVNAVAVSAGG-TVYTGSADRKIRVWAKPF---NE--KRHALI 290 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~iwd~~~---~~--~~~~~~ 290 (437)
.+++..+.+|.++...+.... ....++ ..+.+..+...... .++..+..|.+..++... .. ..+...
T Consensus 81 ~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~ 159 (276)
T 3no0_A 81 NRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQG 159 (276)
T ss_dssp SEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC
T ss_pred CEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEE
Confidence 789999999999999876542 111222 23455555544333 488899999988875431 11 112222
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceE---EeeeecccccceEEEEe-eC-CEEEEEeCCCcE
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMV---VTGALRGHGKAILCLIN-VA-GLLMSGSADRTV 365 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~i~~~~~-~~-~~l~~~~~dg~i 365 (437)
..+.. ...|..+...+++..++..+..|.++...+..-..... -...+ .....+..+.. .+ +.++..+.+|.+
T Consensus 160 i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ 237 (276)
T 3no0_A 160 IKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKA 237 (276)
T ss_dssp CCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCE
T ss_pred EccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeE
Confidence 22332 35566665556667888999999999988753211100 00001 12233443332 32 367777888888
Q ss_pred EE--eeCCC
Q 013717 366 RI--WQRGS 372 (437)
Q Consensus 366 ~i--wd~~~ 372 (437)
.. ++...
T Consensus 238 ir~~~~~~~ 246 (276)
T 3no0_A 238 FYDKINQKD 246 (276)
T ss_dssp EEEEEEGGG
T ss_pred EEeeeCHHH
Confidence 77 87653
No 376
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=41.97 E-value=1.5e+02 Score=24.60 Aligned_cols=196 Identities=10% Similarity=0.102 Sum_probs=101.6
Q ss_pred CCeEEEEee---CCEEEEEecC---eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe--CC-eEEEEecCCeEEEEeC
Q 013717 99 LPIGCIAVH---HNFLYAASSH---EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DG-KIFTAHQDCKIRVWQL 169 (437)
Q Consensus 99 ~~V~~l~~~---~~~l~s~~~d---~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~ 169 (437)
+.+..+... ..+++..+.+ .+.+|++.......+ + . ....|..+... ++ .++..+.+|.++...+
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l--l---~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l 97 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL--K---S-REEKIVGAFIREKFGNRLLLATKKGYVKKIPL 97 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCC--S---S-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccccc--C---C-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEH
Confidence 345444433 3444444444 455566654333221 2 2 34556655433 22 3899999999999987
Q ss_pred CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC-C-CeEEEEECCCcEEEEECCCcc----
Q 013717 170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN-N-GLIYSVSWDKSLKIWRASDLR---- 243 (437)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~~l~~~~~dg~i~iwd~~~~~---- 243 (437)
..-. ... .... .. . ....+.+..+... . ..++..+..|.+..++...-.
T Consensus 98 ~~~~-~~~-~G~~-----~i-----------------~-lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR 152 (276)
T 3no0_A 98 AEFE-YKA-QGMP-----II-----------------K-LTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTP 152 (276)
T ss_dssp GGTT-TCS-TTEE-----CS-----------------C-CCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred HHhh-hhc-CCeE-----EE-----------------e-cCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCC
Confidence 6432 110 0000 00 0 0122344444333 3 788889999998888764321
Q ss_pred -----eEEEeecccccEEEEEEecCC-eEEEEeCCCeEEEecCCCC---cccceeeEEeeCccccEEEEEEccCCCEEEE
Q 013717 244 -----CLESIKAHEDAVNAVAVSAGG-TVYTGSADRKIRVWAKPFN---EKRHALIATLEKHKSAVNALALSDDGTVLFS 314 (437)
Q Consensus 244 -----~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (437)
....+. ....|.++...+++ .++..+..|.++...+..- ....+-+..+ ...+.+..+....+...++.
T Consensus 153 ~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~ 230 (276)
T 3no0_A 153 GARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLI 230 (276)
T ss_dssp TCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEE
T ss_pred CCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEE
Confidence 111222 23556666554444 4889999999888865321 1111112222 22344444433333446666
Q ss_pred EeCCCcEEE--EECC
Q 013717 315 GACDRSILV--WDRE 327 (437)
Q Consensus 315 ~~~dg~i~i--~d~~ 327 (437)
.+.+|.+.. ++..
T Consensus 231 ~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 231 TTKNGKAFYDKINQK 245 (276)
T ss_dssp EETTSCEEEEEEEGG
T ss_pred EcCCCeEEEeeeCHH
Confidence 777787777 7664
No 377
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=41.80 E-value=1.2e+02 Score=27.87 Aligned_cols=70 Identities=14% Similarity=0.283 Sum_probs=43.1
Q ss_pred cEEEEEEec----CCe---EEEEeCCCeEEEecCCCCcc----cceeeEEee--CccccEEEEEEccCCCEEEEEeCCCc
Q 013717 254 AVNAVAVSA----GGT---VYTGSADRKIRVWAKPFNEK----RHALIATLE--KHKSAVNALALSDDGTVLFSGACDRS 320 (437)
Q Consensus 254 ~v~~~~~~~----~~~---l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~ 320 (437)
..++|+... ++. ++.|+.+|.|.-.-+..... ....+..+. ....+|..|.+++++.+|++++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 467777653 243 78899999875443221111 111222333 23578999999999999999988876
Q ss_pred EEE
Q 013717 321 ILV 323 (437)
Q Consensus 321 i~i 323 (437)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 378
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=39.90 E-value=2.4e+02 Score=26.39 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=17.5
Q ss_pred ccccEEEEEEecCCe--EEEEeCCCe
Q 013717 251 HEDAVNAVAVSAGGT--VYTGSADRK 274 (437)
Q Consensus 251 ~~~~v~~~~~~~~~~--l~~~~~dg~ 274 (437)
|-..+....+.-||+ +++...+|+
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt 202 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGT 202 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTC
T ss_pred ccCceeEEEcCCCCcceEEEEccCCc
Confidence 344577777788887 888877776
No 379
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=39.15 E-value=2.2e+02 Score=25.76 Aligned_cols=209 Identities=11% Similarity=0.067 Sum_probs=109.8
Q ss_pred ccEEEEEEeCCeEEEEecCCeEEEEeCC---CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717 143 GSVKSVTFCDGKIFTAHQDCKIRVWQLT---PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA 219 (437)
Q Consensus 143 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (437)
..|..|+......+.-..||.|..|-.. .++.-....... ... ....+-.-....|..++
T Consensus 148 ~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~--------------~~~---~P~~v~~l~~~~i~~va 210 (473)
T 3of7_A 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIK--------------IQK---TPWKVPTFSKYNIVQLA 210 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBS--------------CEE---EEEECCCCCSSCEEEEE
T ss_pred CcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCc--------------ccc---CcEEccccCCCCEEEEE
Confidence 5677787777777777889999999752 122110000000 000 00000001223588888
Q ss_pred eCCCeEEEEECCCcEEEEECCCc-ce------------EEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCccc
Q 013717 220 VNNGLIYSVSWDKSLKIWRASDL-RC------------LESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKR 286 (437)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~-~~------------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 286 (437)
......+....+|.|..|-.... ++ ..........|..|+.. ....++-..+|.|..|-.....+.
T Consensus 211 ~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G-~~hs~alt~~G~v~~wG~n~~Gql 289 (473)
T 3of7_A 211 PGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG-ENHCFALTKDNKLVSWGLNQFGQC 289 (473)
T ss_dssp ECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC-SSEEEEEETTSCEEEEEECTTSTT
T ss_pred ecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC-CCeEEEEecCCCEEEeCCCCCCCc
Confidence 88888888889999999965431 10 00000011356666653 223555567899999943211100
Q ss_pred c--------ee---eEEee-CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccce---------------------
Q 013717 287 H--------AL---IATLE-KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHM--------------------- 333 (437)
Q Consensus 287 ~--------~~---~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------------- 333 (437)
. .. ...+. .....|..|+... .+-++-..||.|+.|-.....+.-
T Consensus 290 G~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~--~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~ 367 (473)
T 3of7_A 290 GVSEDVEDGALVTKPKRLALPDNVVIRSIAAGE--HHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAV 367 (473)
T ss_dssp CCCSCCCTTCEEEEEEECCCCTTCCEEEEEECS--SEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEE
T ss_pred CCCCcccCCceeeccccccccCCccEEEEEeCC--CeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeee
Confidence 0 00 11111 1224566666543 345555678999999754321110
Q ss_pred EEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717 334 VVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 334 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 372 (437)
.....+.+ ...|..++.-....++-..+|.|+.|-...
T Consensus 368 ~~P~~v~~-~~~v~~Ia~G~~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 368 PLPTKLNN-VPKFKSVAAGSHHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp EEEEECCS-SCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred ccCcccCC-CCceEEEEeCCCeEEEEeCCCcEEEeeCCC
Confidence 01111111 115677776667677778999999997654
No 380
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=38.11 E-value=1.5e+02 Score=28.03 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=35.7
Q ss_pred EEEEEEecCCeEEEEeCCC-------------eEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEE
Q 013717 255 VNAVAVSAGGTVYTGSADR-------------KIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSG 315 (437)
Q Consensus 255 v~~~~~~~~~~l~~~~~dg-------------~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~ 315 (437)
.-.|+|+|.|.|+.+...+ .+.+.+...+ ++.+.+.. ....++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g----~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG----EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC----CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC----eEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568899999966665432 3444433222 23333333 45789999999999877765
No 381
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=37.46 E-value=1.7e+02 Score=23.94 Aligned_cols=146 Identities=12% Similarity=0.061 Sum_probs=77.4
Q ss_pred eEEEEECCCcEEEEECCCcce-EEEeecccccEEEEE-EecCCeEEEEeCCCeEEEec---CCCCcccceee---EEeeC
Q 013717 224 LIYSVSWDKSLKIWRASDLRC-LESIKAHEDAVNAVA-VSAGGTVYTGSADRKIRVWA---KPFNEKRHALI---ATLEK 295 (437)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~v~iwd---~~~~~~~~~~~---~~~~~ 295 (437)
.+++.+.+|.|+--....... ...++. .+.+..+. ......++..+..|.+.-+. +.........+ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 355667778877665433211 112232 33344443 33344488888889876654 32221112211 1122
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc---cceEEeeeecccccceEEE-Ee--eCCEEEEEeCCCcEEEee
Q 013717 296 HKSAVNALALSDDGTVLFSGACDRSILVWDREDSA---NHMVVTGALRGHGKAILCL-IN--VAGLLMSGSADRTVRIWQ 369 (437)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~i~~~-~~--~~~~l~~~~~dg~i~iwd 369 (437)
....|.++....++.+|+.++..|.++...+..-. ........+... ..+..+ .. ..+.|+..+.+|.+..|+
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC-CEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 23456666443456678889999999999875321 111111122221 233222 22 244788899999988888
Q ss_pred CCC
Q 013717 370 RGS 372 (437)
Q Consensus 370 ~~~ 372 (437)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 753
No 382
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=34.49 E-value=3.4e+02 Score=26.62 Aligned_cols=165 Identities=10% Similarity=0.173 Sum_probs=82.2
Q ss_pred CCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeec-------ccccEEEEEEecCCe--EEEEeCCCe----
Q 013717 211 HGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKA-------HEDAVNAVAVSAGGT--VYTGSADRK---- 274 (437)
Q Consensus 211 ~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~--l~~~~~dg~---- 274 (437)
-...|.+|+++| ..++++...+.|...+ ..++.-..+.. ....|.+|++.|... ++++..+..
T Consensus 13 ~~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 13 GGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 346899999987 6788888777776655 23333222222 134699999998543 555443211
Q ss_pred EEEecCCCCcccceeeEEeeC------ccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeec---cccc
Q 013717 275 IRVWAKPFNEKRHALIATLEK------HKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALR---GHGK 344 (437)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~ 344 (437)
-.||.-......++.+..-.. ....+..+++.|. ...++++...+. ||-..++...+....... ....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTT
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCC
Confidence 334433334444444322100 0113456788774 346666664443 343333333333322111 1113
Q ss_pred ceEEEEeeC---CEEEEEeCC-CcEEEeeCCCCCCeeee
Q 013717 345 AILCLINVA---GLLMSGSAD-RTVRIWQRGSDGRFGCL 379 (437)
Q Consensus 345 ~i~~~~~~~---~~l~~~~~d-g~i~iwd~~~~~~~~~~ 379 (437)
.+..+.+++ +.++++..+ +.|. .....++.+..+
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~~~~v~-~S~DgG~TW~~~ 207 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATAPQGMY-VTHDGGVSWEPV 207 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESSTTCEE-EESSTTSSCEEC
T ss_pred CeEEEEECCCCCCEEEEEEcCCCeEE-EEcCCCcCcccC
Confidence 456666543 356666654 3333 233444444443
No 383
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=31.29 E-value=2.7e+02 Score=24.49 Aligned_cols=278 Identities=9% Similarity=0.019 Sum_probs=144.0
Q ss_pred cccCCCceeEEecCCCccee----------eee-cCccCCeEEEEeeCCEEEEEecC-eEEEEeCCCC-ce---ee---e
Q 013717 72 QKLSPDETINFSSASHLCIN----------SVQ-LGHKLPIGCIAVHHNFLYAASSH-EINVYDRTGT-TW---TS---I 132 (437)
Q Consensus 72 ~s~s~dg~i~~~~~~~~~~~----------~~~-~~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~-~~---~~---~ 132 (437)
+.+..+|.+..|-.+...++ .-. +.....|..++.-..+.+.-..+ .|..|-.... .+ .. .
T Consensus 21 ~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~ 100 (413)
T 1a12_A 21 SHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGS 100 (413)
T ss_dssp TCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTG
T ss_pred eeecCCCcEEEEECCCCCcCCCCCCccccccceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCcc
Confidence 34566777777765332111 111 12235677777665666666666 9999976541 00 00 0
Q ss_pred eccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeC--CCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717 133 NTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQL--TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE 210 (437)
Q Consensus 133 ~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (437)
......-.-...|..|+.-....+.-..||.|..|-. +............ ... ....+ .
T Consensus 101 ~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~--------------~~~---~P~~v--~ 161 (413)
T 1a12_A 101 EMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK--------------KSM---VPVQV--Q 161 (413)
T ss_dssp GGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTB--------------CEE---EEEEE--C
T ss_pred ccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccc--------------ccc---CCEEe--c
Confidence 0000000112467777777777777788999999975 2211111000000 000 00011 1
Q ss_pred CCCcEEEEEeCCCeEEEEECCCcEEEEECCCc-ce--------------------E-EEeec------ccccEEEEEEec
Q 013717 211 HGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-RC--------------------L-ESIKA------HEDAVNAVAVSA 262 (437)
Q Consensus 211 ~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~--------------------~-~~~~~------~~~~v~~~~~~~ 262 (437)
....|..++......+....||.|..|-.... ++ . ..+.. ....|..++...
T Consensus 162 ~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~ 241 (413)
T 1a12_A 162 LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA 241 (413)
T ss_dssp CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEET
T ss_pred CCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCC
Confidence 34578888887777788889999999975431 10 0 00110 224566666543
Q ss_pred CCeEEEEeCCCeEEEecCCCCccc------ce-eeEEeeCc---cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc--
Q 013717 263 GGTVYTGSADRKIRVWAKPFNEKR------HA-LIATLEKH---KSAVNALALSDDGTVLFSGACDRSILVWDREDSA-- 330 (437)
Q Consensus 263 ~~~l~~~~~dg~v~iwd~~~~~~~------~~-~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 330 (437)
. ..++-..+|.|..|-.....+. .. ....+... ...|..|+.. ..+.++-..||.|+.|-.....
T Consensus 242 ~-hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G--~~hs~al~~~G~v~~wG~n~~GqL 318 (413)
T 1a12_A 242 Y-FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG--QHHTVCMDSEGKAYSLGRAEYGRL 318 (413)
T ss_dssp T-EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTT
T ss_pred C-EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecc--cceEEEEeCCCCEEEeeCCCCCcc
Confidence 3 3344457899999954321110 00 01111111 1336666654 3355556689999999754211
Q ss_pred ------cceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717 331 ------NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 331 ------~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 372 (437)
........+.. ...|..++.-....++-..||.|+.|-...
T Consensus 319 G~g~~~~~~~~P~~v~~-l~~v~~v~~G~~hs~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 319 GLGEGAEEKSIPTLISR-LPAVSSVACGASVGYAVTKDGRVFAWGMGT 365 (413)
T ss_dssp CSCTTCCCEEEEEECCS-SSSEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred CCCCCCccccCCEEecc-cCceeEEEECcceEEEEeCCCCEEEecCCC
Confidence 11111111111 226777777667777778999999997654
No 384
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=29.68 E-value=2e+02 Score=26.65 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=42.7
Q ss_pred cEEEEEEec-CCe--EEEEeCCCeEEEecCCCCcccceeeEEee-CccccE-EEEEEccCCCEEEEEeCCCcEEE
Q 013717 254 AVNAVAVSA-GGT--VYTGSADRKIRVWAKPFNEKRHALIATLE-KHKSAV-NALALSDDGTVLFSGACDRSILV 323 (437)
Q Consensus 254 ~v~~~~~~~-~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i 323 (437)
..+.|+... ++. +..|+.+|.|.-.-+..+... ..+..+. ....+| ..|.++++..+|++++.++.++|
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~-~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDG-HPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCS-CCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCe-eEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 466776653 344 778999999874433211111 1122221 345677 48999999999999988876655
No 385
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=28.10 E-value=3e+02 Score=26.42 Aligned_cols=73 Identities=15% Similarity=0.295 Sum_probs=43.1
Q ss_pred cEEEEEEe----cCCe---EEEEeCCCeEE-EecCCCCcc---cceeeEEee--CccccEEEEEEccCCCEEEEEeCCCc
Q 013717 254 AVNAVAVS----AGGT---VYTGSADRKIR-VWAKPFNEK---RHALIATLE--KHKSAVNALALSDDGTVLFSGACDRS 320 (437)
Q Consensus 254 ~v~~~~~~----~~~~---l~~~~~dg~v~-iwd~~~~~~---~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~ 320 (437)
..+.|+.. +++. ++.|+.+|.|. +.-...... ....+..+. ....+|..|.+++++.+|++++.++.
T Consensus 413 ~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V 492 (667)
T 4gz8_A 413 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 492 (667)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEE
Confidence 34566653 3453 78899999885 322111110 111222222 35668899999999999999988875
Q ss_pred EEEEECC
Q 013717 321 ILVWDRE 327 (437)
Q Consensus 321 i~i~d~~ 327 (437)
++| .+.
T Consensus 493 ~kV-Pl~ 498 (667)
T 4gz8_A 493 AQL-PLH 498 (667)
T ss_dssp EEE-ESC
T ss_pred EEE-Ehh
Confidence 554 443
No 386
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=25.70 E-value=3.1e+02 Score=23.36 Aligned_cols=184 Identities=11% Similarity=0.045 Sum_probs=94.3
Q ss_pred CeEEEEECCCcEEEEECCCcce-----E--EEeecccccEEEEEEe-cCCeEEEEeCCCeEEEecCC--CCc---c--cc
Q 013717 223 GLIYSVSWDKSLKIWRASDLRC-----L--ESIKAHEDAVNAVAVS-AGGTVYTGSADRKIRVWAKP--FNE---K--RH 287 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~-----~--~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~v~iwd~~--~~~---~--~~ 287 (437)
.+++.++.+|.++.-.+...+. + ..++. .+.+..+... .+..++..+..|.+..+... .-. . .+
T Consensus 110 ~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G 188 (327)
T 3uc1_A 110 PYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG 188 (327)
T ss_dssp SEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC
T ss_pred CEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC
Confidence 7899999999999988755322 1 12232 3445555444 34448889999998888654 111 1 11
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc-----ceEEeeeecccccceEEEE-eeC-CEEEEEe
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN-----HMVVTGALRGHGKAILCLI-NVA-GLLMSGS 360 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~i~~~~-~~~-~~l~~~~ 360 (437)
.....+. ....|.++...+++.+++..+..|.++.-.+..-.. .......+......+..+. ..+ +.++..+
T Consensus 189 v~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T 267 (327)
T 3uc1_A 189 VQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVT 267 (327)
T ss_dssp EESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEE
T ss_pred eeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEc
Confidence 1112232 345577776666677899999999999887653211 1111111211122333332 233 3677778
Q ss_pred CCCcEEEeeCCCCCC------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC
Q 013717 361 ADRTVRIWQRGSDGR------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG 413 (437)
Q Consensus 361 ~dg~i~iwd~~~~~~------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg 413 (437)
.+|.+.-++...-.. ......+. ....|.++...+.... .+.+.+.+|
T Consensus 268 ~~G~~ir~~~~~i~~~gR~a~GV~~i~l~-~~d~vv~~~~~~~~~~----~~~~~~~~g 321 (327)
T 3uc1_A 268 SGGGVIRTAARQVRKAGRQTKGVRLMNLG-EGDTLLAIARNAEESG----DDNAVDANG 321 (327)
T ss_dssp GGGCEEEEEGGGSCBCCTTSCCEECTTCC-TTCCEEEEEECC-----------------
T ss_pred CCCeEEEEehhhccccCCCCCCeEeEecC-CCCEEEEEEEcCCCcc----eEEEEecCC
Confidence 888887776543210 01111122 2356777766654332 366666655
No 387
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=24.95 E-value=4.8e+02 Score=25.27 Aligned_cols=165 Identities=10% Similarity=0.012 Sum_probs=0.0
Q ss_pred ccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeC----ccccEEEEEEcc-CCCEEEEEeCCCc-----
Q 013717 253 DAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEK----HKSAVNALALSD-DGTVLFSGACDRS----- 320 (437)
Q Consensus 253 ~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~i~~~~~~~-~~~~l~~~~~dg~----- 320 (437)
+.|..|+++|... ++++...+.|...+- ....++.+..... ....|.+|+++| +.+.++++.....
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D--~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDP--STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEET--TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCC--CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccccccc
Q ss_pred --EEEEECCCCccceEEeeeeccccc------ceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCC----
Q 013717 321 --ILVWDREDSANHMVVTGALRGHGK------AILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH---- 385 (437)
Q Consensus 321 --i~i~d~~~~~~~~~~~~~~~~~~~------~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h---- 385 (437)
..||...++...+........... .+..+.+++. .|+.+...|.-.......++.+..+..+..+
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~~S~DgG~tW~~~~~~~~~~~~~ 180 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLWRSTDYGVTWSKVESFPNPGTYI 180 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEEEESSTTSSCEECTTCCCCCCCB
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCCcEEEeCCCCcceecccCCCCCcccc
Q ss_pred ----------CCCeeEEEEEccC------CCCceEEEEEecCCCcEEEEeeccC
Q 013717 386 ----------TKPVKSLTAVTEE------GQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 386 ----------~~~v~~l~~~~~~------~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
...+..+.+.|.. .. .+..+..|+.-.||.-..+
T Consensus 181 ~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~----~v~~~~~~~~~~v~~S~Dg 230 (737)
T 2cn3_A 181 YDPNFDYTKDIIGVVWVVFDKSSSTPGNPTK----TIYVGVADKNESIYRSTDG 230 (737)
T ss_dssp SCTTSTTTCSBCCEEEEEECGGGSCTTSCCS----CEEEEESCSSCCEEEESST
T ss_pred cCcccccccCCCCEEEEEcCCCCcccCCCCC----EEEEEecCCCccEEEEcCC
No 388
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=23.16 E-value=4.7e+02 Score=24.47 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=42.6
Q ss_pred cEEEEEEec----CC-e--EEEEeCCCeEEEecCCCCc----ccceeeEEeeC-----------ccccEEEEEEccCCCE
Q 013717 254 AVNAVAVSA----GG-T--VYTGSADRKIRVWAKPFNE----KRHALIATLEK-----------HKSAVNALALSDDGTV 311 (437)
Q Consensus 254 ~v~~~~~~~----~~-~--l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~ 311 (437)
..+.|++.. ++ . ++.|+.+|.|+-.-+..+. .....+..+.. ...+|..|.++++...
T Consensus 404 ~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~ 483 (565)
T 3oky_B 404 RLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGS 483 (565)
T ss_dssp CEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTE
T ss_pred ceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCE
Confidence 357777764 22 2 7889999998533221111 11122222221 1457889999999999
Q ss_pred EEEEeCCCcEEE
Q 013717 312 LFSGACDRSILV 323 (437)
Q Consensus 312 l~~~~~dg~i~i 323 (437)
|++++.++.++|
T Consensus 484 LYV~s~~~V~qV 495 (565)
T 3oky_B 484 LYVAFSTCVIKV 495 (565)
T ss_dssp EEEECSSCEEEE
T ss_pred EEEEecCeEEEe
Confidence 999988876665
No 389
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=22.70 E-value=2.2e+02 Score=27.35 Aligned_cols=67 Identities=12% Similarity=0.218 Sum_probs=41.1
Q ss_pred cEEEEEEe----cCC--e--EEEEeCCCeEEEe-cCCCCcccceeeEEee--CccccEEEEEEccCC--CEEEEEeCCCc
Q 013717 254 AVNAVAVS----AGG--T--VYTGSADRKIRVW-AKPFNEKRHALIATLE--KHKSAVNALALSDDG--TVLFSGACDRS 320 (437)
Q Consensus 254 ~v~~~~~~----~~~--~--l~~~~~dg~v~iw-d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~--~~l~~~~~dg~ 320 (437)
..+.|+.. .++ . ++.|+.+|.|.-. ...... ..+..+. ....+|..|.++++. .+|++++.++.
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~---~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V 474 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAV---HIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGV 474 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSE---EEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCc---eEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeE
Confidence 35666653 233 2 7889999987533 322211 1222222 245688899999987 89999887775
Q ss_pred EEE
Q 013717 321 ILV 323 (437)
Q Consensus 321 i~i 323 (437)
++|
T Consensus 475 ~~v 477 (663)
T 1olz_A 475 VQA 477 (663)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 390
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=22.04 E-value=1.7e+02 Score=28.24 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=41.6
Q ss_pred EEEEEEecC-Ce--EEEEeCCCeEEEecCCCCcccceeeEEee--CccccE-EEEEEccCCCEEEEEeCCCcEEE
Q 013717 255 VNAVAVSAG-GT--VYTGSADRKIRVWAKPFNEKRHALIATLE--KHKSAV-NALALSDDGTVLFSGACDRSILV 323 (437)
Q Consensus 255 v~~~~~~~~-~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i 323 (437)
.++|+.... +. ++.|+.+|.|.-.-+.........+..+. ....+| ..|.++++..+|++++.++.++|
T Consensus 401 lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 401 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp BCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 445554432 23 78899999987554432211122333332 234566 68999999889999888776655
No 391
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=21.19 E-value=4.8e+02 Score=24.53 Aligned_cols=57 Identities=11% Similarity=0.182 Sum_probs=36.7
Q ss_pred CcEEEEEeCC-CeEEEEECC-------------CcEEEEECCCcceEEEeec-ccccEEEEEEecCCe-EEEE
Q 013717 213 DAVTGLAVNN-GLIYSVSWD-------------KSLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGT-VYTG 269 (437)
Q Consensus 213 ~~v~~~~~~~-~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-l~~~ 269 (437)
.....|.|++ ..|..+... ..|..++..+++....+.. ....++.++|+||++ |+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3456788887 444443321 2567777777776655543 245789999999998 5444
No 392
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=21.16 E-value=3.7e+02 Score=22.51 Aligned_cols=171 Identities=13% Similarity=0.130 Sum_probs=87.6
Q ss_pred EEEeCCCeEEEEE----CCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeC-CCeEEEecCCCCcccceee
Q 013717 217 GLAVNNGLIYSVS----WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSA-DRKIRVWAKPFNEKRHALI 290 (437)
Q Consensus 217 ~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-dg~v~iwd~~~~~~~~~~~ 290 (437)
.++...+.|+-.. .+..|...++.... ...+..+.. .++++++. |.-.+. ...|.+.++..... +.+
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~--~~l 182 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE--ALF 182 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE--EEE
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE--EEE
Confidence 4555556666655 33456666665433 334433322 45677777 554444 56777777654321 111
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCC--cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEe--CCCcEE
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDR--SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGS--ADRTVR 366 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~--~dg~i~ 366 (437)
+.+ ... ..+.|++.+|+-...++ .|..-++..... ..+. ...+..+++.++.|+-+. ..+.|.
T Consensus 183 --~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt------~~~~~~~~~~g~~Iy~~~~~~~~~i~ 249 (302)
T 3s25_A 183 --YDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT------EANIEHYNVYGSLIFYQRGGDNPALC 249 (302)
T ss_dssp --ECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS------CSCEEEEEEETTEEEEEECSSSCEEE
T ss_pred --eCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe------CCCcceEEECCCEEEEEECCCCcEEE
Confidence 221 222 23568888888766543 566666665432 2221 223456888888766553 245666
Q ss_pred EeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 367 IWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 367 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
.-++....+ ..+ ..+ .+..+. +.++ .+..+--..+.|..-+
T Consensus 250 ~~~~DG~~r-~~l--~~~---~~~~i~--i~~d----~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 250 VVKNDGTGF-KEL--AKG---EFCNIN--VTSQ----YVYFTDFVSNKEYCTS 290 (302)
T ss_dssp EEETTSCCC-EEE--EES---CEEEEE--ECSS----EEEEEETTTCCEEEEE
T ss_pred EEECCCCcc-EEe--eCC---ccceEE--EeCC----EEEEEECCCCeEEEEE
Confidence 666665432 112 122 244443 3443 2555555556644433
No 393
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=20.74 E-value=5.3e+02 Score=24.19 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=47.7
Q ss_pred cEEEEECCCcceEEEee--cc-----------cccEEEEEEecCCe--EEEEe----CCCeEEEecCCCCcccceeeEEe
Q 013717 233 SLKIWRASDLRCLESIK--AH-----------EDAVNAVAVSAGGT--VYTGS----ADRKIRVWAKPFNEKRHALIATL 293 (437)
Q Consensus 233 ~i~iwd~~~~~~~~~~~--~~-----------~~~v~~~~~~~~~~--l~~~~----~dg~v~iwd~~~~~~~~~~~~~~ 293 (437)
.|..||.+.+++...+. .. ...+.-..+.-||+ |+.|+ .||++ +|.. -
T Consensus 293 ~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~-L~st------------~ 359 (591)
T 2zux_A 293 MLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKG-MYST------------G 359 (591)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCE-EEEC------------S
T ss_pred EEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCE-eeeC------------C
Confidence 47788887776544442 11 02344444566666 66654 23433 3422 1
Q ss_pred eCccccEEEEEEccC--CCEEEEEeCCC----cEEEEECCCCccce
Q 013717 294 EKHKSAVNALALSDD--GTVLFSGACDR----SILVWDREDSANHM 333 (437)
Q Consensus 294 ~~~~~~i~~~~~~~~--~~~l~~~~~dg----~i~i~d~~~~~~~~ 333 (437)
.+|...+....|.|+ |..++.+.+++ -..+.|.++++..+
T Consensus 360 ~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw 405 (591)
T 2zux_A 360 LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILW 405 (591)
T ss_dssp CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEE
T ss_pred CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEE
Confidence 257777777777776 44566655541 24456766665443
Done!