Query 013718
Match_columns 437
No_of_seqs 144 out of 1315
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:41:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 8.3E-54 1.8E-58 409.8 28.2 352 37-403 44-409 (449)
2 KOG1303 Amino acid transporter 100.0 2.7E-53 5.9E-58 413.7 27.5 380 24-414 22-409 (437)
3 PTZ00206 amino acid transporte 100.0 5.1E-53 1.1E-57 423.6 23.8 357 39-404 59-425 (467)
4 PF01490 Aa_trans: Transmembra 100.0 1.2E-51 2.5E-56 411.4 3.9 359 38-403 1-369 (409)
5 PLN03074 auxin influx permease 100.0 6.5E-45 1.4E-49 363.3 23.3 344 37-403 43-398 (473)
6 KOG1305 Amino acid transporter 100.0 1.6E-42 3.5E-47 336.6 23.7 355 37-403 3-370 (411)
7 KOG4303 Vesicular inhibitory a 100.0 6.2E-41 1.4E-45 302.7 12.0 352 34-403 111-477 (524)
8 COG0814 SdaC Amino acid permea 100.0 8.3E-33 1.8E-37 272.5 28.1 358 35-403 4-378 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.9 1.4E-25 3E-30 219.7 22.6 347 38-404 1-361 (394)
10 PRK10483 tryptophan permease; 99.9 1.6E-25 3.5E-30 217.2 22.7 350 35-404 6-369 (414)
11 PRK09664 tryptophan permease T 99.9 3.7E-25 8E-30 214.4 23.2 352 37-406 6-372 (415)
12 TIGR00837 araaP aromatic amino 99.9 1E-24 2.2E-29 215.2 18.4 339 46-404 3-355 (381)
13 PRK15132 tyrosine transporter 99.9 7.8E-24 1.7E-28 206.4 22.6 339 41-403 4-357 (403)
14 PRK13629 threonine/serine tran 99.9 7.9E-22 1.7E-26 191.3 21.9 356 43-403 22-410 (443)
15 TIGR00814 stp serine transport 99.9 1.5E-20 3.3E-25 183.9 20.6 353 43-403 6-374 (397)
16 PRK10655 potE putrescine trans 99.6 1.1E-12 2.3E-17 132.1 25.5 241 36-292 4-245 (438)
17 KOG1287 Amino acid transporter 99.6 2E-13 4.3E-18 133.2 18.5 351 35-404 9-382 (479)
18 PRK10435 cadB lysine/cadaverin 99.6 4.9E-13 1.1E-17 134.2 21.7 245 35-295 2-246 (435)
19 TIGR00909 2A0306 amino acid tr 99.5 1.7E-12 3.7E-17 130.3 25.2 294 37-344 2-309 (429)
20 PRK10644 arginine:agmatin anti 99.5 1E-12 2.2E-17 132.4 23.2 244 35-295 5-250 (445)
21 PRK11021 putative transporter; 99.5 3.1E-12 6.6E-17 127.6 25.5 230 41-290 2-231 (410)
22 TIGR00905 2A0302 transporter, 99.5 2.4E-12 5.2E-17 130.7 25.0 246 36-294 5-256 (473)
23 PRK10249 phenylalanine transpo 99.5 1.8E-12 3.8E-17 131.0 23.0 241 35-292 18-265 (458)
24 TIGR00906 2A0303 cationic amin 99.5 3.9E-12 8.4E-17 131.0 25.4 356 35-403 25-406 (557)
25 TIGR00912 2A0309 spore germina 99.5 6.8E-13 1.5E-17 130.0 18.2 331 39-403 2-349 (359)
26 PRK15049 L-asparagine permease 99.5 2.3E-12 4.9E-17 131.3 22.0 349 36-403 26-401 (499)
27 TIGR01773 GABAperm gamma-amino 99.5 5.5E-12 1.2E-16 127.4 22.1 242 35-294 9-259 (452)
28 TIGR00930 2a30 K-Cl cotranspor 99.5 6E-12 1.3E-16 135.6 23.4 247 35-291 73-335 (953)
29 TIGR00911 2A0308 L-type amino 99.5 2.4E-11 5.3E-16 124.3 26.3 249 34-295 38-294 (501)
30 PRK11049 D-alanine/D-serine/gl 99.5 1.1E-11 2.5E-16 125.5 22.3 240 35-292 17-267 (469)
31 PRK11357 frlA putative fructos 99.4 1.7E-11 3.6E-16 123.6 23.1 240 35-291 5-250 (445)
32 PRK10238 aromatic amino acid t 99.4 2.3E-11 4.9E-16 122.9 22.3 236 35-287 9-251 (456)
33 PRK11387 S-methylmethionine tr 99.4 3E-11 6.6E-16 122.5 23.0 244 36-296 12-266 (471)
34 PRK10746 putative transport pr 99.4 7.1E-11 1.5E-15 119.3 23.8 349 36-403 8-383 (461)
35 TIGR00908 2A0305 ethanolamine 99.4 1.3E-10 2.9E-15 117.0 24.2 237 36-289 5-244 (442)
36 PRK10580 proY putative proline 99.4 1E-10 2.3E-15 118.2 23.3 240 35-291 6-254 (457)
37 COG1113 AnsP Gamma-aminobutyra 99.4 2.1E-11 4.5E-16 117.4 16.5 332 35-386 10-369 (462)
38 TIGR03810 arg_ornith_anti argi 99.4 1.8E-10 3.8E-15 116.9 24.1 292 38-343 1-308 (468)
39 PRK10836 lysine transporter; P 99.3 2E-10 4.3E-15 117.1 23.1 244 35-295 12-264 (489)
40 TIGR00913 2A0310 amino acid pe 99.3 2.3E-10 5.1E-15 116.5 22.9 237 37-290 1-251 (478)
41 PF13520 AA_permease_2: Amino 99.3 1.8E-10 3.8E-15 115.6 19.7 291 40-347 1-306 (426)
42 PF03845 Spore_permease: Spore 99.3 4.2E-10 9E-15 108.4 19.3 284 39-347 1-295 (320)
43 PRK10197 gamma-aminobutyrate t 99.2 6.3E-10 1.4E-14 112.1 20.4 334 49-403 3-363 (446)
44 COG0531 PotE Amino acid transp 99.2 2.4E-09 5.2E-14 108.7 22.9 295 35-343 9-316 (466)
45 COG0833 LysP Amino acid transp 99.2 1.8E-08 3.9E-13 99.4 25.4 350 35-403 41-423 (541)
46 KOG1286 Amino acid transporter 99.2 1.1E-09 2.4E-14 111.1 17.0 359 35-403 27-418 (554)
47 TIGR03428 ureacarb_perm permea 99.1 3.5E-08 7.6E-13 100.3 26.1 252 36-296 11-273 (475)
48 TIGR00907 2A0304 amino acid pe 99.0 1.1E-07 2.5E-12 96.8 24.5 253 36-296 10-277 (482)
49 PRK15238 inner membrane transp 98.8 1.3E-06 2.7E-11 89.5 25.0 238 36-291 5-266 (496)
50 TIGR03813 put_Glu_GABA_T putat 98.8 8.2E-07 1.8E-11 90.4 22.1 243 39-296 2-254 (474)
51 KOG3832 Predicted amino acid t 98.8 6.7E-08 1.5E-12 82.7 11.4 211 41-257 13-299 (319)
52 PF00324 AA_permease: Amino ac 98.8 1.5E-08 3.3E-13 103.2 8.9 238 49-297 6-261 (478)
53 TIGR00910 2A0307_GadC glutamat 98.7 9.9E-07 2.2E-11 90.3 20.1 234 37-289 3-247 (507)
54 KOG1289 Amino acid transporter 98.6 1.1E-05 2.4E-10 79.9 21.4 253 37-297 47-313 (550)
55 TIGR00800 ncs1 NCS1 nucleoside 98.5 0.0001 2.2E-09 74.2 25.4 343 37-399 11-380 (442)
56 COG3949 Uncharacterized membra 98.4 9.3E-05 2E-09 68.9 20.1 135 43-193 6-145 (349)
57 TIGR02119 panF sodium/pantothe 98.2 0.00056 1.2E-08 69.6 23.2 152 35-199 37-193 (471)
58 PRK11375 allantoin permease; P 98.2 0.0029 6.2E-08 64.4 28.1 280 104-399 89-394 (484)
59 TIGR02358 thia_cytX probable h 98.1 0.0025 5.5E-08 62.9 24.8 282 105-417 59-344 (386)
60 PRK09442 panF sodium/panthothe 98.0 0.0023 5E-08 65.3 24.9 153 35-199 38-194 (483)
61 COG0591 PutP Na+/proline sympo 97.9 0.003 6.4E-08 64.5 23.3 151 35-197 35-189 (493)
62 PRK12488 acetate permease; Pro 97.9 0.0054 1.2E-07 63.5 25.1 151 35-199 64-216 (549)
63 TIGR00813 sss transporter, SSS 97.9 0.0033 7.2E-08 62.7 21.6 150 37-199 2-152 (407)
64 TIGR02711 symport_actP cation/ 97.8 0.015 3.3E-07 60.2 25.9 151 35-199 64-216 (549)
65 PF02554 CstA: Carbon starvati 97.6 0.0015 3.3E-08 62.2 13.5 147 39-198 51-198 (376)
66 TIGR02121 Na_Pro_sym sodium/pr 97.5 0.023 5E-07 58.0 22.2 154 35-199 33-192 (487)
67 PRK09395 actP acetate permease 97.5 0.081 1.8E-06 55.0 26.4 151 35-199 66-218 (551)
68 COG1457 CodB Purine-cytosine p 97.5 0.019 4E-07 56.9 20.2 262 105-397 82-351 (442)
69 PRK11017 codB cytosine permeas 97.5 0.069 1.5E-06 53.1 24.4 174 104-298 71-245 (404)
70 PRK15419 proline:sodium sympor 97.5 0.057 1.2E-06 55.4 24.2 154 35-199 37-196 (502)
71 COG1953 FUI1 Cytosine/uracil/t 97.4 0.16 3.5E-06 50.7 25.7 282 103-396 102-405 (497)
72 TIGR03648 Na_symport_lg probab 97.4 0.095 2.1E-06 54.5 24.8 151 35-198 29-180 (552)
73 PF00474 SSF: Sodium:solute sy 97.4 0.0029 6.2E-08 63.1 13.0 150 37-199 5-156 (406)
74 PRK10484 putative transporter; 97.2 0.038 8.2E-07 57.0 20.1 157 35-199 35-197 (523)
75 COG1914 MntH Mn2+ and Fe2+ tra 97.1 0.045 9.8E-07 54.0 18.1 353 39-421 16-396 (416)
76 TIGR00796 livcs branched-chain 97.1 0.091 2E-06 51.5 19.7 65 47-119 2-69 (378)
77 PRK15015 carbon starvation pro 96.7 0.014 3.1E-07 59.6 11.2 103 41-146 84-186 (701)
78 TIGR00835 agcS amino acid carr 96.7 0.025 5.5E-07 55.9 12.7 147 38-197 45-199 (425)
79 KOG1288 Amino acid transporter 96.7 0.09 1.9E-06 53.9 15.9 221 59-292 88-350 (945)
80 PF02133 Transp_cyt_pur: Perme 96.6 0.0096 2.1E-07 60.0 9.1 244 36-294 5-259 (440)
81 KOG2083 Na+/K+ symporter [Inor 96.4 0.0052 1.1E-07 61.7 5.5 228 40-288 30-275 (643)
82 COG4147 DhlC Predicted symport 96.3 1.3 2.8E-05 44.0 23.1 218 56-294 60-294 (529)
83 COG1966 CstA Carbon starvation 96.1 0.047 1E-06 54.7 10.2 102 40-145 52-154 (575)
84 PF05525 Branch_AA_trans: Bran 96.0 0.7 1.5E-05 45.9 17.9 72 40-119 3-77 (427)
85 PRK00701 manganese transport p 95.9 1.5 3.3E-05 44.0 20.5 40 105-145 95-134 (439)
86 PF01235 Na_Ala_symp: Sodium:a 95.6 1.3 2.8E-05 43.9 18.1 51 36-87 15-66 (416)
87 PF01566 Nramp: Natural resist 95.6 0.97 2.1E-05 44.2 17.4 81 105-195 43-125 (358)
88 KOG2466 Uridine permease/thiam 93.8 6.2 0.00013 39.4 17.2 302 27-346 42-377 (572)
89 PF05525 Branch_AA_trans: Bran 93.4 0.55 1.2E-05 46.7 9.6 77 105-191 262-338 (427)
90 TIGR00796 livcs branched-chain 93.3 0.51 1.1E-05 46.3 9.2 80 103-192 254-333 (378)
91 KOG2082 K+/Cl- cotransporter K 92.0 2.7 5.9E-05 44.0 12.5 149 49-201 124-287 (1075)
92 PRK15433 branched-chain amino 91.1 7.7 0.00017 38.8 14.4 71 41-119 9-82 (439)
93 PF00209 SNF: Sodium:neurotran 90.9 8.4 0.00018 39.8 15.4 36 40-75 5-41 (523)
94 COG1114 BrnQ Branched-chain am 88.8 3.3 7.1E-05 40.6 9.5 79 105-193 264-342 (431)
95 COG4145 PanF Na+/panthothenate 87.6 29 0.00062 33.8 18.2 140 37-187 38-180 (473)
96 KOG2349 Na+:iodide/myo-inosito 85.3 22 0.00048 36.8 13.7 92 35-132 42-135 (585)
97 COG0733 Na+-dependent transpor 83.3 52 0.0011 32.9 18.4 108 39-152 8-118 (439)
98 PRK15433 branched-chain amino 79.4 8.5 0.00018 38.5 8.0 76 105-191 266-341 (439)
99 PHA02764 hypothetical protein; 77.1 8.5 0.00018 36.4 6.7 88 37-129 11-101 (399)
100 COG0814 SdaC Amino acid permea 72.5 62 0.0013 32.3 12.2 152 248-403 206-371 (415)
101 COG1115 AlsT Na+/alanine sympo 71.4 1.2E+02 0.0025 30.5 19.7 332 35-386 58-418 (452)
102 KOG3660 Sodium-neurotransmitte 67.9 1.7E+02 0.0037 31.0 17.6 44 40-83 38-82 (629)
103 TIGR01197 nramp NRAMP (natural 65.7 1.5E+02 0.0032 29.4 21.5 38 353-390 331-370 (390)
104 PF02028 BCCT: BCCT family tra 65.0 1.7E+02 0.0037 29.9 13.9 161 36-199 71-255 (485)
105 KOG1289 Amino acid transporter 54.1 2.1E+02 0.0046 29.5 11.7 47 105-152 326-372 (550)
106 COG1292 BetT Choline-glycine b 53.0 1.8E+02 0.0039 29.9 11.1 117 37-155 85-224 (537)
107 PF05915 DUF872: Eukaryotic pr 50.8 44 0.00095 26.7 5.3 65 41-109 40-112 (115)
108 COG1114 BrnQ Branched-chain am 47.4 3E+02 0.0065 27.4 14.6 72 40-119 5-79 (431)
109 TIGR00842 bcct choline/carniti 41.5 1.9E+02 0.004 29.3 9.3 118 37-155 34-174 (453)
110 PF02468 PsbN: Photosystem II 37.8 40 0.00087 21.6 2.5 28 272-299 4-31 (43)
111 PRK03356 L-carnitine/gamma-but 36.8 2.7E+02 0.0059 28.6 9.7 161 37-199 83-268 (504)
112 CHL00020 psbN photosystem II p 36.6 34 0.00073 21.9 2.0 28 272-299 4-31 (43)
113 PRK13183 psbN photosystem II r 35.5 41 0.0009 21.8 2.3 29 271-299 6-34 (46)
114 TIGR00909 2A0306 amino acid tr 34.7 3.9E+02 0.0084 26.5 10.7 47 105-152 265-311 (429)
115 KOG2466 Uridine permease/thiam 34.3 1.2E+02 0.0027 30.7 6.5 168 115-289 339-514 (572)
116 PHA02680 ORF090 IMV phosphoryl 34.1 36 0.00079 25.3 2.2 65 237-307 17-81 (91)
117 PRK09950 putative transporter; 32.6 5.7E+02 0.012 26.3 20.4 161 37-199 81-265 (506)
118 PRK10745 trkD potassium transp 26.9 7.8E+02 0.017 26.1 13.5 25 71-95 49-73 (622)
119 PF05767 Pox_A14: Poxvirus vir 26.9 42 0.00092 25.2 1.5 58 235-299 15-72 (92)
120 COG1292 BetT Choline-glycine b 26.3 3.9E+02 0.0085 27.5 8.7 65 131-195 411-478 (537)
121 TIGR00906 2A0303 cationic amin 25.1 7.9E+02 0.017 25.6 15.2 86 114-199 308-399 (557)
122 PRK09928 choline transport pro 23.0 5E+02 0.011 27.8 9.0 161 37-199 90-272 (679)
123 KOG1291 Mn2+ and Fe2+ transpor 21.8 8.6E+02 0.019 24.8 14.4 52 352-403 354-407 (503)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-54 Score=409.81 Aligned_cols=352 Identities=20% Similarity=0.306 Sum_probs=311.6
Q ss_pred cCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchh---CCCccccCHHHHHHHH
Q 013718 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM---VPGKRFDRYHELGQHA 113 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~---~~~~~~~~y~~l~~~~ 113 (437)
++..|..++..|+.|.++|+|+|++|+||+++|++.|.+..+++++++.|+++.+++|.+. ..+....+|+|.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999652 2223346788888766
Q ss_pred h----------CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCc
Q 013718 114 F----------GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 183 (437)
Q Consensus 114 ~----------G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l 183 (437)
+ |+ ++|.++++.+.++++|.|++|+++++++++++.+... ...++.+.++.+..++.+|++++|++
T Consensus 124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~---~~~~s~~~~i~~~~~~~lll~~Ir~L 199 (449)
T KOG1304|consen 124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS---PGVLSVRLYILIQLPPLLLLNLIRNL 199 (449)
T ss_pred HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC---CCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 4 43 5579999999999999999999999999999998422 24577899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCC
Q 013718 184 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 263 (437)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~ 263 (437)
+.|+.+|+++.++.++...++.++.+.... +.++.....++.+++..+|+.+|||+|+.++.|++++| |+
T Consensus 200 k~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~ 269 (449)
T KOG1304|consen 200 KILSPFSLFANVFILVGLAIIMYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KK 269 (449)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccC------CccccccccchhhhHHHHHHHHHHhccceEEEehhhcc----cC
Confidence 999999999999888877777666554322 11122234458899999999999999999999999999 89
Q ss_pred CCCcccc-hhhhhHHHHHHHHHHHHHhhhhhcccccchhhhhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHH
Q 013718 264 PSKGPMW-RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIET 342 (437)
Q Consensus 264 p~~~~~~-~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~ 342 (437)
|+++.-+ ++...+|.+++++|+.+|++||++|||++++.+++|+|+ +++.+.+++++++.++++||++++|..+++|+
T Consensus 270 P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~ 348 (449)
T KOG1304|consen 270 PQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEP 348 (449)
T ss_pred hhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHH
Confidence 9865422 788899999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeee
Q 013718 343 LLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l 403 (437)
.++++.+.+++++..+..|..++++++.+|..+||++.+++++|+++++.+++++|+++++
T Consensus 349 ~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel 409 (449)
T KOG1304|consen 349 GIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIEL 409 (449)
T ss_pred hHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHH
Confidence 9888777666778889999999999999999999999999999999999999999999999
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-53 Score=413.68 Aligned_cols=380 Identities=45% Similarity=0.815 Sum_probs=333.0
Q ss_pred hhccccccccccccCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhC---CC
Q 013718 24 KQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMV---PG 100 (437)
Q Consensus 24 ~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~---~~ 100 (437)
++.++|++++..++|+.|++++.++.++.++|.|+|+||+++++.||..|+++++..++++.||..+|.+|.+.+ ++
T Consensus 22 ~~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~ 101 (437)
T KOG1303|consen 22 RKSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG 101 (437)
T ss_pred cccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 566677777778899999999999999999999999999999999999999999999999999999999987643 45
Q ss_pred ccccCHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCC
Q 013718 101 KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 180 (437)
Q Consensus 101 ~~~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~ 180 (437)
+|+++|.|+++++||++. ++++...+.+.+||.++.|.+..+|.+..+.+....+.. ....+.|+++++++.+|++++
T Consensus 102 ~r~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-~l~~~~f~iif~~i~~~~s~l 179 (437)
T KOG1303|consen 102 KRRYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-SLDKQYFIIIFGLIVLPLSQL 179 (437)
T ss_pred ccCCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cccceehhhhHHHHHHHHHHC
Confidence 566789999999999875 799999999999999999999999999999998774332 233678999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhhhheeccCCCCcc-ccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCc
Q 013718 181 PNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVA-YGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS 259 (437)
Q Consensus 181 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~ 259 (437)
|+++.+++.|..+.+.++.+..+.+..+..++...+.. .+..+..... ..++++|++.|+|.+|.++|+|+++|
T Consensus 180 p~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~---~~f~a~g~iaFaf~gH~v~peIq~tM-- 254 (437)
T KOG1303|consen 180 PNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIP---TVFTALGIIAFAYGGHAVLPEIQHTM-- 254 (437)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCc---chhhhhhheeeeecCCeeeeehHhhc--
Confidence 99999999999999999888888888878777544221 2222211111 11899999999999999999999999
Q ss_pred CCCCCCCcccchhhhhHHHHHHHHHHHHHhhhhhcccccchhhhhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHH
Q 013718 260 TPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDM 339 (437)
Q Consensus 260 ~~k~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~ 339 (437)
|+|.+ ++|++..++.+++.+|+..++.||++|||+++|+++.|++++.|+...+++++.+|++.+|.....|+.+.
T Consensus 255 --k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~ 330 (437)
T KOG1303|consen 255 --KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDV 330 (437)
T ss_pred --CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHH
Confidence 78886 55999999999999999999999999999999999999976688999999999999999999999999999
Q ss_pred HHHHHhhhcC-C-CccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeee--ccCCcccchhh
Q 013718 340 IETLLVKKLN-F-SPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPL--QSSKTFSFLSF 414 (437)
Q Consensus 340 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l--~~~~~~~~~w~ 414 (437)
+|++...+++ . ++....|.+.|+.+++.++++|+.+|.|+++++++|++....+.+++|+++|+ +|.+|+.++|.
T Consensus 331 ~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~ 409 (437)
T KOG1303|consen 331 VEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWL 409 (437)
T ss_pred HHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 9999876644 1 13556899999999999999999999999999999999999999999999999 66677777776
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=5.1e-53 Score=423.56 Aligned_cols=357 Identities=17% Similarity=0.230 Sum_probs=291.7
Q ss_pred CCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCccc
Q 013718 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (437)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 118 (437)
..+..++.+|++|+++|+|+|++|++|++.||+.|++++++++.++.|+.+++.+++++ .+ ..+|+|++++++|+ +
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~--~~sY~~la~~~~G~-~ 134 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TN--IRTYEGVARVLLGP-W 134 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCHHHHHHHHhCH-H
Confidence 46779999999999999999999999999999999999999999999999999998774 33 34999999999996 5
Q ss_pred cchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCC---CCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 013718 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP---CKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (437)
Q Consensus 119 g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~---~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~ 195 (437)
+++++++.+.+.++|.|++|+++.+|.+..+++.....+ ....++..+.++...+++|++++|+++.|+++|.++++
T Consensus 135 g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~ 214 (467)
T PTZ00206 135 GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVS 214 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHH
Confidence 679999999999999999999999999998876421100 00112334455667788999999999999999999998
Q ss_pred HHHHHHHHHhhhheeccCCCCccc---ccc---ccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCccc
Q 013718 196 MSLSYSTIAWSASVRKGVQPDVAY---GYK---AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (437)
Q Consensus 196 ~~~~~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~ 269 (437)
+.+..++.+++....++.+++.+. +.. +........+.+.++|+++|||.||.+++++++|| |||+++++
T Consensus 215 ~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~~ 290 (467)
T PTZ00206 215 FMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGKF 290 (467)
T ss_pred HHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhHH
Confidence 666555444444444433222111 000 00011122468899999999999999999999999 78887788
Q ss_pred chhhhhHHHHHHHHHHHHHhhhhhcccccchhhhhhCCC-CchHHHHHHHHHHHHHHHhhcceeccchHHHHHHHHhhhc
Q 013718 270 WRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLE-KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL 348 (437)
Q Consensus 270 ~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~-~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~ 348 (437)
.++...++.++.++|..+|++||+.||++++++++.|++ .++....++++++.+.++++||++.+|+|+.+++.+..+.
T Consensus 291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~ 370 (467)
T PTZ00206 291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDA 370 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCc
Confidence 899999999999999999999999999999999999994 5577788899999999999999999999999999874432
Q ss_pred CCCccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeeec
Q 013718 349 NFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPLQ 404 (437)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l~ 404 (437)
+ +.+++++...+..+.+.++++|+.+||++.+++++||++++.++|++|+++|++
T Consensus 371 ~-~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~ 425 (467)
T PTZ00206 371 R-KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMY 425 (467)
T ss_pred c-cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 2 223445556666677788999999999999999999999999999999999984
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.2e-51 Score=411.39 Aligned_cols=359 Identities=28% Similarity=0.494 Sum_probs=310.2
Q ss_pred CCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCC-CccccCHHHHHHHHhCc
Q 013718 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP-GKRFDRYHELGQHAFGE 116 (437)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~~~~y~~l~~~~~G~ 116 (437)
+|.|+++++++++|+++|+|+|++|++|+++|++.|++++++++.++.||.+++.++++..+ +++..+|+|++++.+|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999987543 34466999999999998
Q ss_pred cccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q 013718 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVM 196 (437)
Q Consensus 117 ~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~ 196 (437)
++ ++++++++.+.++|.+++|++..+|.+..+.+...+. ...++..+.++..++++|++++|+++.+++.|.+++++
T Consensus 81 ~~-~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~--~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~ 157 (409)
T PF01490_consen 81 KG-KWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD--LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFS 157 (409)
T ss_pred cc-cccccchheeccccccceeEEEeeeeeeccccccccc--ccccccccccccccccccccccchhhHHHHHhhhhhhc
Confidence 65 5999999999999999999999999999998875422 23567788888899999999999999999999999996
Q ss_pred HHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCC-cccchhhhh
Q 013718 197 SLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK-GPMWRGVVV 275 (437)
Q Consensus 197 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~-~~~~~~~~~ 275 (437)
.+..+.+...........++.+...++.....++.+++.++|+++|+|.+|.++|++++|| |+|++ +|++++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~~~~ 233 (409)
T PF01490_consen 158 IFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKVLSI 233 (409)
T ss_pred cceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccceeeee
Confidence 6553222222222222222222222222345667899999999999999999999999999 78887 667899999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchhhhhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHHHHhhh--------
Q 013718 276 AYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK-------- 347 (437)
Q Consensus 276 ~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~-------- 347 (437)
++.+++++|..+|+.||++||+++++|++.|++++++...++++++.++++.+||++.+|.++.+++.+.++
T Consensus 234 s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~ 313 (409)
T PF01490_consen 234 SMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSP 313 (409)
T ss_pred hhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheecccccccccc
Confidence 999999999999999999999999999999999877889999999999999999999999999999998753
Q ss_pred cCCCccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeee
Q 013718 348 LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l 403 (437)
.+.+..+++|+..|+.+++.++++|..+||++++++++|++++..++|++|+++|+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~ 369 (409)
T PF01490_consen 314 KNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYL 369 (409)
T ss_pred ccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHH
Confidence 12344567899999999999999999999999999999999999999999999999
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=6.5e-45 Score=363.25 Aligned_cols=344 Identities=17% Similarity=0.269 Sum_probs=285.7
Q ss_pred cCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchh----CCC--c--c--ccCH
Q 013718 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM----VPG--K--R--FDRY 106 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~----~~~--~--~--~~~y 106 (437)
..+.|..++.+++++..+|.|+|+||++|+++||++|++.+++.++++.||.+++.+++.+ ++. . + ..+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 3468889999999999999999999999999999999999999999999999999986432 221 1 1 1368
Q ss_pred HHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhh
Q 013718 107 HELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAI 186 (437)
Q Consensus 107 ~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l 186 (437)
.|+++..+||+++ .+..+...+++++.++.|++..++.+..+. ...+.+.|++++.++.+|++++|+++.+
T Consensus 123 ~e~~~~~~G~~~~-~~~~~~~~v~l~~~~v~~li~~~~~~~~l~--------~~~~~~~~~~i~~~v~~~~~~i~sl~~l 193 (473)
T PLN03074 123 FEVLDGLLGPYWK-NVGLAFNCTFLLFGSVIQLIACASNIYYIN--------DNLDKRTWTYIFGACCATTVFIPSFHNY 193 (473)
T ss_pred HHHHHHhcChhHH-HHHHHHHhhhhHHHHHHHHHHHhhhhhhhC--------CCcCCCeEEeehHHHHHHHHHccCHHHH
Confidence 9999999998665 788888889999999999998777655441 2356788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCC
Q 013718 187 AGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (437)
Q Consensus 187 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~ 266 (437)
+++|.+++..++.....++.....++..++.++ ..+.++..++.++++++|+|++|.++|++++|| |||++
T Consensus 194 ~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~-----~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P~~ 264 (473)
T PLN03074 194 RIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKH-----SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKPQK 264 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-----CCchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cChhc
Confidence 999999988655433333333333332222211 123466788888999999999999999999999 89998
Q ss_pred cccchhhhhHHHHHHHHHHHHHhhhhhcccccchh--hhhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHHHH
Q 013718 267 GPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLL 344 (437)
Q Consensus 267 ~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~ 344 (437)
++ +....+...+..+|+.+++.||+.|||++++ +.+.|+|++. ...++++++.++++.+||+++.|+.+.+|+..
T Consensus 265 F~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~ 341 (473)
T PLN03074 265 FK--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAI 341 (473)
T ss_pred cc--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 77 8888999999999999999999999998764 5677788644 46789999999999999999999999998886
Q ss_pred hhhcCCCccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeee
Q 013718 345 VKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l 403 (437)
..+ ..+....|+.+|+.++++++++|+.+|+|+.+++++||++++.+++++|+++|+
T Consensus 342 ~~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l 398 (473)
T PLN03074 342 GVH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHM 398 (473)
T ss_pred ccc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 234456789999999999999999999999999999999999999999999998
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-42 Score=336.60 Aligned_cols=355 Identities=21% Similarity=0.342 Sum_probs=297.5
Q ss_pred cCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCc
Q 013718 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 116 (437)
+++.|...+++|+.|+++|+|++++|++|++.|++.|++++.++|+++.++.+++.++..+.+ .+ +|+++++..+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~-~~--ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG-ER--TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC-CC--CHHHHHHHHcCC
Confidence 456788999999999999999999999999999999999999999999999999999987443 33 999999999995
Q ss_pred cccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCC--c-cchh-hhHHHHHHHHHHhCCCCchhhHHHHHH
Q 013718 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKE--I-KLSY-FIMIFASVHFVLSHLPNFNAIAGVSLA 192 (437)
Q Consensus 117 ~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~--~-~~~~-~~~i~~~~i~pl~~~~~l~~l~~~s~~ 192 (437)
.|+....+.......| +++|++.++|.+..+.......+... + .+.. +++....++.|+++.|+++++++.|.+
T Consensus 80 -~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~ 157 (411)
T KOG1305|consen 80 -LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSAL 157 (411)
T ss_pred -CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 5656555555555555 69999999999996666544222211 2 2333 577788899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhheeccC-CCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccch
Q 013718 193 AAVMSLSYSTIAWSASVRKGV-QPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWR 271 (437)
Q Consensus 193 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~ 271 (437)
++...+..+.++++..+.... .+...+. ......+.+++.++++++|+|.||++..++++|| |||+++++++
T Consensus 158 s~~~~~~fv~~vv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i~~ 230 (411)
T KOG1305|consen 158 SLASVVYFVVLVVYKYFQGPCALGRLSYL---VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKIQR 230 (411)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCcccc---cCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHHHH
Confidence 999777766666665554332 1111111 1112233689999999999999999999999999 9999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcccccchhhhhhCCCCchHH------HHHHHHHHHHHHHhhcceeccchHHHHHHHHh
Q 013718 272 GVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWL------IVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 345 (437)
Q Consensus 272 ~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~------~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 345 (437)
+...+...+.++|..+|..||+.|||++.+|++.++++.+.. ...+|..+.++++.++|+..+|+|..+++...
T Consensus 231 v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~ 310 (411)
T KOG1305|consen 231 VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLF 310 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 999999999999999999999999999999999999865433 46899999999999999999999999988876
Q ss_pred hhcC--CCccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeee
Q 013718 346 KKLN--FSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 346 ~~~~--~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l 403 (437)
+... .+.++.++.+.+..++....+.|+.+||++++++++|++++..++|++|+++|+
T Consensus 311 ~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl 370 (411)
T KOG1305|consen 311 PYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYL 370 (411)
T ss_pred ccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhh
Confidence 6543 235677888999999999999999999999999999999999999999999999
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-41 Score=302.70 Aligned_cols=352 Identities=18% Similarity=0.279 Sum_probs=303.8
Q ss_pred ccccCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCc-----cccCHHH
Q 013718 34 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGK-----RFDRYHE 108 (437)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~-----~~~~y~~ 108 (437)
++.+.+.+-+++..|+.|++-|.=+++||+|....|+. ++..++.+|.++.||..+|++|..+..+. .+++|.+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 34557899999999999999999999999999998875 99999999999999999999997533211 1479999
Q ss_pred HHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHH
Q 013718 109 LGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (437)
Q Consensus 109 l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~ 188 (437)
++..+++|+.|...+.+.+++....+|+.|.++.+|.+.+.+|.. ..+++.|+++..+.++|..++|+++-.+.
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~------svd~~sWm~i~~a~LLpc~FLk~Lk~VS~ 263 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL------SVDKASWMMITSASLLPCSFLKDLKIVSR 263 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC------CccccchhhhhhHHHhhhHHHHHHHHHHH
Confidence 999999999998889999999999999999999999988876643 35678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcc
Q 013718 189 VSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (437)
Q Consensus 189 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~ 268 (437)
+|.++.+.-+.+=.+++.+++... .++.+.......+..+++.++|+++|+|..|.-.|+++.+| +||++++
T Consensus 264 lSf~ct~sH~viN~i~v~YCLs~~----~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn 335 (524)
T KOG4303|consen 264 LSFFCTISHLVINLIMVLYCLSFV----SDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN 335 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----hhccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc----CChhHhe
Confidence 999988866555555556666432 34455445556677889999999999999999999999999 9999887
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhhcccccchhhhhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHHHHhhhc
Q 013718 269 MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL 348 (437)
Q Consensus 269 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~ 348 (437)
..+.++=+.+.++-..+|..||++|++.++..+++|+++.+ +..++++++.+..++|||+-++...+.+|+.+....
T Consensus 336 --~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qs-fk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~ 412 (524)
T KOG4303|consen 336 --VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQS-FKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGY 412 (524)
T ss_pred --eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccc-hhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCC
Confidence 77789999999999999999999999999999999999644 688899999999999999999999999998765443
Q ss_pred CC----------CccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeee
Q 013718 349 NF----------SPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 349 ~~----------~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l 403 (437)
.. ..-+.+.+..|+++++.+.+.|+.+|+|..+++++|+++++.++|+.|++|++
T Consensus 413 p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl 477 (524)
T KOG4303|consen 413 PQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHL 477 (524)
T ss_pred CCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHH
Confidence 21 11133446789999999999999999999999999999999999999999999
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-33 Score=272.45 Aligned_cols=358 Identities=18% Similarity=0.216 Sum_probs=283.5
Q ss_pred cccCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHh
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (437)
..+++.+..++++++.++++|+|+|++|++++..|++++++++++.+.+++++.+++.|+..+.++. +.++.+++++.+
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~-~~~~~~~~~~~~ 82 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG-KASITSLVEDYL 82 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cccHHHHHHHHh
Confidence 3566788899999999999999999999999999999999999999999999999999998866543 259999999999
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~ 194 (437)
||+++ ++.++++.+.+|+.+.+|.+..++.+++.++...+.+. .++..+.+++..++.++++.++...++..+.+..
T Consensus 83 G~~~~-~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~--~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~ 159 (415)
T COG0814 83 GKKGG-ILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP--LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVF 159 (415)
T ss_pred CcchH-HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC--cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 98766 99999999999999999999999999999998553321 5678888899999999999999999999999998
Q ss_pred HHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhh
Q 013718 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (437)
Q Consensus 195 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~ 274 (437)
......++...+..... ++......+... ...+.++..++|+++|||+||+++|++.+|| |++++++.+|+..
T Consensus 160 ~~v~~~~~l~~~~~~~~--~~~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~~~~~~~~k~~~ 232 (415)
T COG0814 160 GKVIYLVLLVVYLIPHW--NPANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAIL 232 (415)
T ss_pred HHHHHHHHHHHHHhccc--CHHHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHh----ccchhHHHHHHHH
Confidence 86655554444332221 111111111111 4677899999999999999999999999999 5555545779999
Q ss_pred hHHHHHHHHHHHHHhhhhhcccccchhhhhhCCCCchH-------------HHHHHHHHHHHHHHhhcceeccchHHHHH
Q 013718 275 VAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTW-------------LIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (437)
Q Consensus 275 ~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~-------------~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 341 (437)
.+..+..++|..+++.+|..+|++++++++++.++++. .....+++..+.+..|+--.....++.++
T Consensus 233 ~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~ 312 (415)
T COG0814 233 IGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLA 312 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhh
Confidence 99999999999999999999999999999999976432 23334455555555665555556667777
Q ss_pred HHHhhhcCCC----ccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeee
Q 013718 342 TLLVKKLNFS----PTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 342 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l 403 (437)
+.++.+++.+ .............+..+...+...|..+.+.+.+|+.....+.++.|...+.
T Consensus 313 ~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~ 378 (415)
T COG0814 313 DLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIY 378 (415)
T ss_pred HHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7766521111 1122333445566677778888889999999999999999999999988886
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=1.4e-25 Score=219.74 Aligned_cols=347 Identities=16% Similarity=0.251 Sum_probs=255.0
Q ss_pred CCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCcc
Q 013718 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (437)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 117 (437)
++.+.+++.+.+.++.+|+|+|+||.+.+..|..++++.+++++.+++++..++.|...+.++. .++.+++++.+|++
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~--~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEG--SSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHhChH
Confidence 3568899999999999999999999999999999999999999999999999999998766554 49999999999986
Q ss_pred ccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q 013718 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMS 197 (437)
Q Consensus 118 ~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~ 197 (437)
++ ++..+...+..|+.+++|....++.+++.++...+. +.++.....++.++...+... .-+...+.+.+-+...
T Consensus 79 g~-~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~---~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~ 153 (394)
T PF03222_consen 79 GG-IVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT---DLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGM 153 (394)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 55 999999999999999999999999999999886532 233333334444443333332 2223344433333322
Q ss_pred HHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhhhHH
Q 013718 198 LSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAY 277 (437)
Q Consensus 198 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~~~~ 277 (437)
+..........+-+...+. -........++...+.++|++++||..|..+|++.+.++ +|++ +.+|++..+.
T Consensus 154 i~~~~~l~~~~~p~~~~~~---L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~~--k~~~ai~~Gs 225 (394)
T PF03222_consen 154 IISFIILVVYLIPHWNPSN---LLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDPK--KIRKAIIIGS 225 (394)
T ss_pred HHHHHHHHHHHhhhcCHHH---hhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccHH--HHHHHHHHHH
Confidence 2221111111111111111 111122356788899999999999999999999999984 3444 4559999999
Q ss_pred HHHHHHHHHHHhhhhh-----------cccccchh--hhhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHHHH
Q 013718 278 IVVALCYFPVALIGYW-----------MFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLL 344 (437)
Q Consensus 278 ~~~~~~y~~~g~~gy~-----------~fg~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~ 344 (437)
.+..++|+..-...-. ..+++..+ ..+.+..++.+...+..++..+++.+||--....++|.+.+.+
T Consensus 226 ~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 305 (394)
T PF03222_consen 226 LIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLF 305 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988899876443322 22222221 3344444557778889999999999999999999999999998
Q ss_pred hhhcCCCccchhhhhhhHHHHHHHHHHHhhccc-hhhhhhhhhcchhhhhHhhhcceeeec
Q 013718 345 VKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPTTYFVSQILPLQ 404 (437)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~~~G~~~~~~l~~ilP~l~~l~ 404 (437)
+.++ +...|........++++++|...|+ |..++++.| ...+.+..++|+++.++
T Consensus 306 k~~~----~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~ 361 (394)
T PF03222_consen 306 KLKN----NSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWK 361 (394)
T ss_pred cCCc----cccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHH
Confidence 6632 2234555667778899999999998 899999999 99999999999999883
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.94 E-value=1.6e-25 Score=217.17 Aligned_cols=350 Identities=16% Similarity=0.144 Sum_probs=255.8
Q ss_pred cccCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHh
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (437)
+++++.+.+.+.+.+.++.||+|+|++|.+.++.|+.+++++++++++++.||..++.|++.+.+++ .++.+++|+.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g--~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIG--SSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHc
Confidence 4567789999999999999999999999999999999999999999999999999999998765543 49999999999
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~ 194 (437)
|++ |+++..++..+..|+.+++|+.-.++.+++.++.. +. +.++..-.+++.++.-.+.+.. .+...+.+.+-+
T Consensus 84 G~~-g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~~---~i~~~~~~llF~~~~~~iv~~g-t~~vd~~n~~l~ 157 (414)
T PRK10483 84 GKG-WNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-SL---NVPARAAGFGFALLVAFVVWLS-TKAVSRMTAIVL 157 (414)
T ss_pred ChH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-CC---CCcHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHH
Confidence 975 55999999999999999999999999999998762 11 2334455566666665555542 244444443333
Q ss_pred HHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhh
Q 013718 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (437)
Q Consensus 195 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~ 274 (437)
...++..++.+.. +....+.+...+.. ......+...+.++|++++||+.|+++|++.+.++ +|++ +.+|++.
T Consensus 158 ~~~i~~f~~~~~~-l~~~i~~~~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--kir~~I~ 230 (414)
T PRK10483 158 GAKVITFFLTFGS-LLGHVQPATLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TIVKCLV 230 (414)
T ss_pred HHHHHHHHHHHHH-HHhhcCHHHHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HHHHHHH
Confidence 3222111111111 11111111111111 11123355688999999999999999999999984 3444 5669999
Q ss_pred hHHHHHHHHHHHHHhhhhhc-----------ccccchh--hhhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHH
Q 013718 275 VAYIVVALCYFPVALIGYWM-----------FGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (437)
Q Consensus 275 ~~~~~~~~~y~~~g~~gy~~-----------fg~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 341 (437)
.+..+..++|+..-...... -+++.+. ..+.+..++.....+..++..+++.+||--.....+|.+.
T Consensus 231 iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~ 310 (414)
T PRK10483 231 YGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLA 310 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998854433332 2333321 1222222345666788899999999999999999999999
Q ss_pred HHHhhhcCCCccchhhhhhhHHHHHHHHHHHhhccc-hhhhhhhhhcchhhhhHhhhcceeeec
Q 013718 342 TLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPTTYFVSQILPLQ 404 (437)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~~~G~~~~~~l~~ilP~l~~l~ 404 (437)
+.++.+++ ...|........+++.++|...|+ |-..+++.|.. .+.+..++|+++.++
T Consensus 311 D~~k~~~~----~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~ 369 (414)
T PRK10483 311 DLFGFDDS----AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARA 369 (414)
T ss_pred HHhCCCCc----cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99876532 234555666789999999999998 99999999966 678888999999994
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.94 E-value=3.7e-25 Score=214.41 Aligned_cols=352 Identities=14% Similarity=0.142 Sum_probs=250.8
Q ss_pred cCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCc
Q 013718 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 116 (437)
++|.+.+.+.+.+.+++||+|+|+||.+-++.|+.+++++++++++++.||..++.|++.+.+++ .++..++|+.+|+
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g--~~l~tma~~~LG~ 83 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVG--SSFNTITKDLIGN 83 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHcCh
Confidence 34458888999999999999999999999999999999999999999999999999998766543 4999999999997
Q ss_pred cccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q 013718 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVM 196 (437)
Q Consensus 117 ~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~ 196 (437)
+ |+++..++..+..|+.+++|+.-.++.+++.++...+. +.++....++++++.-++.+... +...+.+.+=+..
T Consensus 84 ~-g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~---~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~l~~~ 158 (415)
T PRK09664 84 T-WNIISGITVAFVLYILTYAYISANGAIISETISMNLGY---HANPRIVGICTAIFVASVLWISS-LAASRITSLFLGL 158 (415)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccC---CCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHH
Confidence 5 66999999999999999999999999999998763211 22334344566666655555432 3444443333322
Q ss_pred HHHHHHHHhhhheeccCCCCccccccccC-ccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhhh
Q 013718 197 SLSYSTIAWSASVRKGVQPDVAYGYKAKT-AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVV 275 (437)
Q Consensus 197 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~~ 275 (437)
.++..++.+.. .......+...+.+... ....+..++.++|++++||+.|+++|++.+.++ +|++| .+|++..
T Consensus 159 ~ii~f~~~~~~-l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~--~~kaIl~ 232 (415)
T PRK09664 159 KIISFVIVFGS-FFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDK--LIKSVVF 232 (415)
T ss_pred HHHHHHHHHHH-HhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHH--HHHHHHH
Confidence 22211111111 11111111000100000 011134578899999999999999999999984 44444 4488888
Q ss_pred HHHHHHHHHHHH--Hhhh---------hhcccccchhhhh--hCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHH
Q 013718 276 AYIVVALCYFPV--ALIG---------YWMFGNKVEDNIL--LSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIET 342 (437)
Q Consensus 276 ~~~~~~~~y~~~--g~~g---------y~~fg~~~~~~il--~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~ 342 (437)
+..+..++|+.. ++.| ....|+++.+.+. ..-.+..+...+..++..+++.+||--+....+|.+.+
T Consensus 233 Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D 312 (415)
T PRK09664 233 GSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLAD 312 (415)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888554 2223 2223444433111 11123467788889999999999999999999999999
Q ss_pred HHhhhcCCCccchhhhhhhHHHHHHHHHHHhhccc-hhhhhhhhhcchhhhhHhhhcceeeeccC
Q 013718 343 LLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPTTYFVSQILPLQSS 406 (437)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~~~G~~~~~~l~~ilP~l~~l~~~ 406 (437)
.++.+++ +..|.....+..+++.++|...|+ |-..+++.|.. .+.+..++|+++.++.|
T Consensus 313 ~~~~~~~----~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~R 372 (415)
T PRK09664 313 LFKIDNS----HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKAR 372 (415)
T ss_pred HhCCCCc----cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 9866532 234556667789999999999999 99999999985 66888899999999433
No 12
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.93 E-value=1e-24 Score=215.16 Aligned_cols=339 Identities=15% Similarity=0.141 Sum_probs=252.2
Q ss_pred HHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCccccchhhHH
Q 013718 46 AFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVP 125 (437)
Q Consensus 46 ~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~ 125 (437)
.+.++++++|+|+|++|..+++.|...+++.+++.++++.++..++.|...+.|+.. ++.+++++.+||+.+ +++.+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~--~~~~~~~~~~G~~~g-~~~~~ 79 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGA--SFNTIAKDLLGKTGN-IIAGL 79 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhCHHHH-HHHHH
Confidence 456789999999999999999999999999999999999999999999987777544 999999999997655 99999
Q ss_pred HHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHh
Q 013718 126 QQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAW 205 (437)
Q Consensus 126 ~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~ 205 (437)
...+.++..+.+|.+..++.+..+++...+. ..+.....+++.+++.++.. +..+...+++.+.+...+......+
T Consensus 80 ~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 80 SLLFVLYILTYAYISGGGSILSRLIGEYFGF---PWSARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764321 12233333444444444444 4567777777777765554333332
Q ss_pred hhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhhhHHHHHHHHHH
Q 013718 206 SASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYF 285 (437)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~~~~~~~~~~y~ 285 (437)
.....+...++..+. ...+..+.++..+++...++|.+|.+++.+.+|+ +++ +++++|++..+..+++++|+
T Consensus 156 i~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~~lY~ 227 (381)
T TIGR00837 156 SGLLPHVKGDLLLDV---ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIALVLYI 227 (381)
T ss_pred HHHHhhccHHHHhcC---ccccccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHHHHHH
Confidence 222222111111110 1112356688899999999999999999999998 555 45788999999999999999
Q ss_pred HHHhhhhhcccccchh----------h---hhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHHHHhhhcCCCc
Q 013718 286 PVALIGYWMFGNKVED----------N---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSP 352 (437)
Q Consensus 286 ~~g~~gy~~fg~~~~~----------~---il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~ 352 (437)
.+........+.+.-. + ...+.-.+.+...+...+..+.+.+|+.....+.+|.+.+.++.+++
T Consensus 228 l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~--- 304 (381)
T TIGR00837 228 LWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS--- 304 (381)
T ss_pred HHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---
Confidence 8877666555432111 1 12221123456777888889999999999999999998888876432
Q ss_pred cchhhhhhhHHHHHHHHHHHhhccchh-hhhhhhhcchhhhhHhhhcceeeec
Q 013718 353 TRLLRFVVRNLYVASTMFIGITFPFFG-GLLGFFGGFAFAPTTYFVSQILPLQ 404 (437)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~ia~~~p~~~-~i~~~~G~~~~~~l~~ilP~l~~l~ 404 (437)
+.+|.....+..+++.++|...|+.. ..++.+| +..+.+.+++|++++++
T Consensus 305 -~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~ 355 (381)
T TIGR00837 305 -KKGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWK 355 (381)
T ss_pred -cCCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 22356677788899999999999855 9999999 88889999999999984
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.92 E-value=7.8e-24 Score=206.42 Aligned_cols=339 Identities=15% Similarity=0.170 Sum_probs=245.6
Q ss_pred chhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCccccc
Q 013718 41 KWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGL 120 (437)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~ 120 (437)
+.+.+.+.+.+|.+|+|+|+||.+.+..|.+++++++++++.++.|+.+++.|+..+.++ ..++.+++++.+|++++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~--~~~~~~~a~~~LG~~g~- 80 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA--DTGLGTLAKRYLGRYGQ- 80 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHhChHHH-
Confidence 678999999999999999999999999999999999999999999999999998665443 34899999999998655
Q ss_pred hhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHH
Q 013718 121 YIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSY 200 (437)
Q Consensus 121 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~~~~ 200 (437)
++..++..+..|..+.+|....++.+.+.+..+.+.+ .+.....+++.++.....+.. .+...+.+.+=+...++.
T Consensus 81 ~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~---i~~~~~~l~F~~~~~~iv~~g-~~~v~~~n~~L~~~~ii~ 156 (403)
T PRK15132 81 WLTGFSMMFLMYALTAAYISGAGELLASSISDWTGIS---MSPTAGVLLFTLVAGGVVCVG-TSSVDLFNRFLFSAKIIF 156 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCC---CChHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887754221 233344445544443333332 233333333322211111
Q ss_pred HHHHhhhheeccCCCCcccc-ccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhhhHHHH
Q 013718 201 STIAWSASVRKGVQPDVAYG-YKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIV 279 (437)
Q Consensus 201 ~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~~~~~~ 279 (437)
.+..... +. ++.+.+ ..+. +.+...++.++|++++||+.|+++|++.+.++ +|++ +.+|++..+..+
T Consensus 157 ~~~~~~~-l~----p~~~~~~L~~~--~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~---~~~~--~~~k~i~~Gs~i 224 (403)
T PRK15132 157 LVVMLAL-MM----PHIHKVNLLTL--PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMG---GNIR--KLRWVFIIGSAI 224 (403)
T ss_pred HHHHHHH-HH----HhcCHHHHhcC--CccccHHHHHHHHHHHHhhCCcccHHHHHHhC---cCHH--HHHHHHHHHHHH
Confidence 1111111 11 111111 0000 11112488999999999999999999999983 3333 556999999999
Q ss_pred HHHHHHHHHhhhhhcccccc----------hhhhhhCC---CCchHHHHHHHHHHHHHHHhhcceeccchHHHHHHHHhh
Q 013718 280 VALCYFPVALIGYWMFGNKV----------EDNILLSL---EKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK 346 (437)
Q Consensus 280 ~~~~y~~~g~~gy~~fg~~~----------~~~il~~~---~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~ 346 (437)
..++|+..-......-+.+. -++.+..+ .+..+...+..++..+++.+||--.....+|.+.+.++.
T Consensus 225 ~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~ 304 (403)
T PRK15132 225 PLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQR 304 (403)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999887666555444221 01222222 234677788899999999999999999999999999865
Q ss_pred hcCCCccchhhhhhhHHHHHHHHHHHhhccc-hhhhhhhhhcchhhhhHhhhcceeee
Q 013718 347 KLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~~~G~~~~~~l~~ilP~l~~l 403 (437)
+++ ...|.....+..++++++|...|+ |..++++.|. ..+.+.+++|+++.+
T Consensus 305 ~~~----~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~ 357 (403)
T PRK15132 305 RNT----VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVW 357 (403)
T ss_pred Ccc----ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 422 223666777889999999999998 8899999886 578999999999988
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.89 E-value=7.9e-22 Score=191.32 Aligned_cols=356 Identities=12% Similarity=0.082 Sum_probs=246.5
Q ss_pred hhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCccccchh
Q 013718 43 WYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYI 122 (437)
Q Consensus 43 ~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~ 122 (437)
..-.+.+.++.+|+|+|+||-.....|..+.++.+++++.+++++.+.+.|.....++ +..++.|++++.+|++++ .+
T Consensus 22 ~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-~~~~i~~v~~~~lG~~g~-~i 99 (443)
T PRK13629 22 TTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-PSGNITETVEEHFGKTGG-VV 99 (443)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHcChhHH-HH
Confidence 3445999999999999999999999999999999999999999999999998664422 234999999999998777 99
Q ss_pred hHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q 013718 123 VVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYST 202 (437)
Q Consensus 123 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 202 (437)
..++.++..|..+.+|...+.+.+++.+.++.+.+ +.++....+++..++.......+ +..-+++.+-+...+...+
T Consensus 100 ~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~--~~~r~l~slifv~~l~~iv~~G~-~~v~kv~~~Lv~~~i~~l~ 176 (443)
T PRK13629 100 ITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFA--PLNRGFVALFLLLLMAFVIWFGK-DLMVKVMSYLVWPFIASLV 176 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcC--CccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888766654221 22344444555555544444332 3333333333221111111
Q ss_pred HHhhhheeccCCCCcc-ccc---cccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCC---CCC--Ccccchhh
Q 013718 203 IAWSASVRKGVQPDVA-YGY---KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE---KPS--KGPMWRGV 273 (437)
Q Consensus 203 i~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k---~p~--~~~~~~~~ 273 (437)
....+.+-+...+... .+. +..........+..++|++++||+.|+.+|++...+|+..+ +++ ++|.+|++
T Consensus 177 ~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii 256 (443)
T PRK13629 177 LISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQII 256 (443)
T ss_pred HHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHH
Confidence 1111111111111000 000 00000111245889999999999999999999999654322 234 56777999
Q ss_pred hhHHHHHHHHHHHHHhhhhhcccccch-----h--hhh---hC-CCC---c-----hHHHHHHHHHHHHHHHhhcceecc
Q 013718 274 VVAYIVVALCYFPVALIGYWMFGNKVE-----D--NIL---LS-LEK---P-----TWLIVMANFFVVVHVIGSYQIYAM 334 (437)
Q Consensus 274 ~~~~~~~~~~y~~~g~~gy~~fg~~~~-----~--~il---~~-~~~---~-----~~~~~~~~~~~~i~~~~s~pl~~~ 334 (437)
..+..+..++|+.+-+.+...-+++.- + +++ .| +++ . .....+..++..+++.+||--...
T Consensus 257 ~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~L 336 (443)
T PRK13629 257 SRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYL 336 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887777666653221 1 211 11 222 1 446777788888899999999999
Q ss_pred chHHHHHHHHhh----hcC-CCccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeee
Q 013718 335 PVFDMIETLLVK----KLN-FSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 335 ~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l 403 (437)
..+|.+..+..+ .++ +...+..+......+.+.++..+..=|++-.+++-.|+-..+.+.|++|...-.
T Consensus 337 Gl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~ 410 (443)
T PRK13629 337 GTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIR 410 (443)
T ss_pred HHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 999999998843 111 122344455666778889999999999999999988888889999999988776
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.86 E-value=1.5e-20 Score=183.87 Aligned_cols=353 Identities=10% Similarity=0.074 Sum_probs=249.7
Q ss_pred hhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCccccchh
Q 013718 43 WYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYI 122 (437)
Q Consensus 43 ~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~ 122 (437)
..-.+.+.++++|+|+|.+|...++.||...++..++...+++++.+++.|.....+. ...++.|++++.||+++| .+
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G-~i 83 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWG-IL 83 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHH-HH
Confidence 5668899999999999999999999999999999999999999999999998543322 134999999999998777 89
Q ss_pred hHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q 013718 123 VVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYST 202 (437)
Q Consensus 123 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 202 (437)
..+...+..+..+.+|....++.+.+.+......+.+ .+....+..++++-.......+.+.+++.+-+...+....
T Consensus 84 i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p---~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~ 160 (397)
T TIGR00814 84 ITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPP---LRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILV 160 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988775422111 1222222222222333334677777777766653333222
Q ss_pred HHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCC--CcccchhhhhHHHHH
Q 013718 203 IAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS--KGPMWRGVVVAYIVV 280 (437)
Q Consensus 203 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~--~~~~~~~~~~~~~~~ 280 (437)
......+-+...+... .. ......+.++..++++.++||.+|+.+|+...+.|+..+||+ ++|.+|.+..+..+.
T Consensus 161 ~l~~~lip~~~~~~L~-~~--p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~ 237 (397)
T TIGR00814 161 LLSLYLIPHWNGANLT-TF--PSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLIL 237 (397)
T ss_pred HHHHHHHHHcCHHHHh-cC--CcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Confidence 2222222111111110 01 111234678999999999999999999999843321114343 456679999999999
Q ss_pred HHHHHHHHhhhhhcccccchh-------hhhh---CCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHHHHhhhc--
Q 013718 281 ALCYFPVALIGYWMFGNKVED-------NILL---SLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-- 348 (437)
Q Consensus 281 ~~~y~~~g~~gy~~fg~~~~~-------~il~---~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~-- 348 (437)
.++|+..-+.+....+++.-. +.+. |..+......+..++..+++.+|+--+...++|.+.+++.+..
T Consensus 238 ~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~ 317 (397)
T TIGR00814 238 VATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKM 317 (397)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 999998888777777643311 1122 1113356677788888889999999999999999999884221
Q ss_pred --CCCccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeee
Q 013718 349 --NFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 349 --~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l 403 (437)
+..+++.........+.+.++..|..=|++-.+++-.|+-..+.+.|++|...-.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~ 374 (397)
T TIGR00814 318 KGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIY 374 (397)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 1122334455666777889999999999999999988888888999999988776
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.57 E-value=1.1e-12 Score=132.07 Aligned_cols=241 Identities=9% Similarity=0.020 Sum_probs=152.2
Q ss_pred ccCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhC
Q 013718 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (437)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (437)
++|+.+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.......+.|...+.|+.. ...+..++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G--G~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG--GMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--chHHHHHHHcC
Confidence 46789999999999999999999999999988775 5777788888888888888888776666654 77888999999
Q ss_pred ccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHH-HHHHHhCCCCchhhHHHHHHHH
Q 013718 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS-VHFVLSHLPNFNAIAGVSLAAA 194 (437)
Q Consensus 116 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-~i~pl~~~~~l~~l~~~s~~~~ 194 (437)
|++| ++......+.......++.....+++..+++. ... ....+.....+ .++-..-.+..+....++.+..
T Consensus 81 ~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~----~~~--~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~ 153 (438)
T PRK10655 81 KSGN-FMANYTYGVSLLIANVAIAISAVGYGTELFGA----TLS--PVQICLATIGVLWLCTVANFGGARITGQISSVTV 153 (438)
T ss_pred cchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----ccc--hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9888 77777665554444444433334444433321 001 11112111111 1111122234555555554444
Q ss_pred HHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhh
Q 013718 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (437)
Q Consensus 195 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~ 274 (437)
...+....++..........+...+.+.+. ....+.++..++....|+|.|.+.+....+|+ |||+| +++|++.
T Consensus 154 ~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi~ 227 (438)
T PRK10655 154 WGVIIPVVGLSIIGWFWFSPSLYVAAWNPH-HLPFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVPIAVL 227 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCcCcc-CCchHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-cccHHHH
Confidence 332221111111111111111111111111 11224567788889999999999999999999 89987 7889999
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 013718 275 VAYIVVALCYFPVALIGY 292 (437)
Q Consensus 275 ~~~~~~~~~y~~~g~~gy 292 (437)
.+..++.++|++......
T Consensus 228 ~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 228 GGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988765544
No 17
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.56 E-value=2e-13 Score=133.21 Aligned_cols=351 Identities=15% Similarity=0.151 Sum_probs=207.4
Q ss_pred cccCCCchhhHHHHhhhcccccccchHHHHHHhcC--chhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLG--WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~ 112 (437)
..+|+.+.+.++..++++++|+|++..|....+.+ ...+++..+++++++...+....|.....|+.+ .......+
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksG--gd~ayi~~ 86 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSG--GDYAYISE 86 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC--cchhhHHH
Confidence 46789999999999999999999999998876555 344556678999999999999999866544433 44456667
Q ss_pred HhCccccchhhHHHHHHHHhHH-hhhhHhhhccc-hHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCC--CchhhHH
Q 013718 113 AFGEKLGLYIVVPQQLIVEVGV-CIVYMVTGGKS-LHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLP--NFNAIAG 188 (437)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~-~~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~--~l~~l~~ 188 (437)
+||+.++ ++....-.+..... +..+.+..+++ +++..+ . |. ..+...-.+.+.++..+.++. +++.-++
T Consensus 87 afg~~~a-F~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~----c~-~p~~~~~lla~~~l~~lt~~n~~~V~~a~~ 159 (479)
T KOG1287|consen 87 AFGPFPA-FLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L----CD-VPRVASKLLAAALLVLLTLINSFSVKWATR 159 (479)
T ss_pred Hhccchh-HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C----CC-CchHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 7898777 44333333333333 35566666666 444433 1 21 222222233333333333332 3333333
Q ss_pred HHHHHHHHHHHHHHHHhh---hheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCC
Q 013718 189 VSLAAAVMSLSYSTIAWS---ASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (437)
Q Consensus 189 ~s~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~ 265 (437)
+..+..+.-+..+.++.. +...++..++.+.+. -.....+..++..++-...|+|.|...+-.+.+|+ |||+
T Consensus 160 vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEi----knP~ 234 (479)
T KOG1287|consen 160 VQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI----KNPR 234 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhchheeEecccccccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchHhh----cCcc
Confidence 333333322222222222 222333333222221 12224455678899999999999999999999999 9998
Q ss_pred CcccchhhhhHHHHHHHHHHHHHhhhhhcccccchhhhhhC------CCC---chHHHHHHHHHHHHHHHhhcceeccch
Q 013718 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLS------LEK---PTWLIVMANFFVVVHVIGSYQIYAMPV 336 (437)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~------~~~---~~~~~~~~~~~~~i~~~~s~pl~~~~~ 336 (437)
| ++++++..++.+++++|+++-+..+.+-. ++.++.+ +.+ .++. ..+-++..++.+.+.-..++..
T Consensus 235 k-tLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~ 309 (479)
T KOG1287|consen 235 R-TLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSS 309 (479)
T ss_pred c-cchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHH
Confidence 7 89999999999999999999887665543 2222211 111 1222 4455566666666655555555
Q ss_pred HHHHHHHHhhhcCC---Cccchhhh--hhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeeec
Q 013718 337 FDMIETLLVKKLNF---SPTRLLRF--VVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPLQ 404 (437)
Q Consensus 337 ~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l~ 404 (437)
.+.+....++.+-. .....++. ....+......++....+|++.+++.++=.-.....+.+=+++++|
T Consensus 310 SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR 382 (479)
T KOG1287|consen 310 SRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLR 382 (479)
T ss_pred HHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544433200 00001111 1222333344444445678888888887666666666677788883
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.55 E-value=4.9e-13 Score=134.20 Aligned_cols=245 Identities=11% Similarity=0.069 Sum_probs=154.9
Q ss_pred cccCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHh
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (437)
+++|+.+.++.+...+++++|+|++.+|...++.|- ..+...++.++........+.|...+.|+.. ...+.+++ +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~-~~i~~wli~~~~~l~~al~~aEL~s~~P~~G--G~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGS-IAIWGWIISIIGAMSLAYVYARLATKNPQQG--GPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHH-H
Confidence 457889999999999999999999999999998774 3566677778888888888888877777655 67777788 7
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~ 194 (437)
||++| +.+.............++.+...+++..+.+... .......+.++ .+.++-+...+..+....++.+..
T Consensus 78 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~----~~~~~~~~~~~-i~~~~~~ln~~gvk~~~~i~~i~~ 151 (435)
T PRK10435 78 SPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN----DPIPAGIACIA-IVWVFTFVNMLGGTWVSRLTTIGL 151 (435)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC----ChHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99888 7777665544444444454555555554443211 01111111111 111111222334455555554444
Q ss_pred HHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhh
Q 013718 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (437)
Q Consensus 195 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~ 274 (437)
+..++.+.........+...+....++++ ..+.++.++..++....|+|.|.+.+....+|+ |||+| +.+|++.
T Consensus 152 ~~~li~~~~~~i~g~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~iPrAi~ 225 (435)
T PRK10435 152 VLVLIPVVGTAIVGWHWFDAATYAANWNT-SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR-TVPLATM 225 (435)
T ss_pred HHHHHHHHHHHHHHHHHcCHHhhcccccC-CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-cccHHHH
Confidence 33222111111111111111111111111 113456789999999999999999999999999 89976 7889999
Q ss_pred hHHHHHHHHHHHHHhhhhhcc
Q 013718 275 VAYIVVALCYFPVALIGYWMF 295 (437)
Q Consensus 275 ~~~~~~~~~y~~~g~~gy~~f 295 (437)
.+..++.++|++..+......
T Consensus 226 ~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 226 LGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998877654443
No 19
>TIGR00909 2A0306 amino acid transporter.
Probab=99.55 E-value=1.7e-12 Score=130.28 Aligned_cols=294 Identities=13% Similarity=0.064 Sum_probs=185.6
Q ss_pred cCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCc
Q 013718 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 116 (437)
+|+.+.++.+...+++++|+|++.+|......+....++..++.+++.......+.|...+.|+.. +..+..++.+||
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G~ 79 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAG--SPYTYAYEAMGE 79 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--cceeeHHHHhCc
Confidence 578999999999999999999999997765444344666677788888888888889877677644 677888899999
Q ss_pred cccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCc-----cchh--hhHHHHHHHHHHhCCCCchhhHHH
Q 013718 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEI-----KLSY--FIMIFASVHFVLSHLPNFNAIAGV 189 (437)
Q Consensus 117 ~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~-----~~~~--~~~i~~~~i~pl~~~~~l~~l~~~ 189 (437)
+.| ++......+........+....++++..+++.......... +... +..+...+++-....+..+...++
T Consensus 80 ~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 80 LTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV 158 (429)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 888 77787777777667777777778887777653210000000 0001 111222222223333467777777
Q ss_pred HHHHHHHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCccc
Q 013718 190 SLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (437)
Q Consensus 190 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~ 269 (437)
+.+.....+...++.+.....+...+ ++.+. .+.++.++..++....|+|.|.+.+....+|+ |||+| +.
T Consensus 159 ~~v~~~~~i~~l~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r-~i 228 (429)
T TIGR00909 159 NDILVVLKVAALLLFAALGAIHFASN----NYTPF-MPMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPER-DI 228 (429)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhCcHH----hcCCC-CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc-cc
Confidence 77766644443322222222221111 11111 13356678899999999999999999999999 88875 67
Q ss_pred chhhhhHHHHHHHHHHHHHhhhhhccccc----chh---hhhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHH
Q 013718 270 WRGVVVAYIVVALCYFPVALIGYWMFGNK----VED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIET 342 (437)
Q Consensus 270 ~~~~~~~~~~~~~~y~~~g~~gy~~fg~~----~~~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~ 342 (437)
+|++..+..++.++|+..........+.+ .++ .+..+.. .++...+..+...+..+.+.........+.+..
T Consensus 229 p~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~ 307 (429)
T TIGR00909 229 PKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFA 307 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998876554332211 001 1222222 234444555666666666555555555555554
Q ss_pred HH
Q 013718 343 LL 344 (437)
Q Consensus 343 ~~ 344 (437)
+-
T Consensus 308 ~a 309 (429)
T TIGR00909 308 MS 309 (429)
T ss_pred HH
Confidence 43
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.55 E-value=1e-12 Score=132.42 Aligned_cols=244 Identities=15% Similarity=0.121 Sum_probs=151.1
Q ss_pred cccCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHh
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (437)
+.+|+.+.++.+...+++++|+|++.+|...++.|. ..+...++.++........+.|.....|+.. ...+.+++.+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aG--G~y~~~~~~~ 81 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPG--GSYAYARRCF 81 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHHHc
Confidence 356889999999999999999999999999888764 3455566777777777888888877677654 6777799999
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHh--CCCCchhhHHHHHH
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLS--HLPNFNAIAGVSLA 192 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~--~~~~l~~l~~~s~~ 192 (437)
||++| +++.....+.......+......++...+.+... . .....++...+++.+. -....|...+++.+
T Consensus 82 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i 153 (445)
T PRK10644 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----D---PLVLTITCVVVLWIFVLLNIVGPKMITRVQAV 153 (445)
T ss_pred CchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----C---cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 99888 7776665554433333333333344333322110 0 1111111122211222 22345555555555
Q ss_pred HHHHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchh
Q 013718 193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRG 272 (437)
Q Consensus 193 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~ 272 (437)
.....++.+.+.....+.....+.....++ ......+..+..++....|+|.|.+.+....+|+ |||+| +.+|+
T Consensus 154 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iPra 227 (445)
T PRK10644 154 ATVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIA 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhccCCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCccc-chhHH
Confidence 544333221111111111111111111111 0112344567778889999999999999999999 89987 78899
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcc
Q 013718 273 VVVAYIVVALCYFPVALIGYWMF 295 (437)
Q Consensus 273 ~~~~~~~~~~~y~~~g~~gy~~f 295 (437)
+..+..++.++|.+..+......
T Consensus 228 i~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 228 TIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998877644333
No 21
>PRK11021 putative transporter; Provisional
Probab=99.54 E-value=3.1e-12 Score=127.59 Aligned_cols=230 Identities=14% Similarity=0.168 Sum_probs=145.9
Q ss_pred chhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCccccc
Q 013718 41 KWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGL 120 (437)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~ 120 (437)
+.+++....+++++|+|++.+|....+.+-...++..++.+++.......+.|...+.|+.. +.....++.+|+++|
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG--G~y~y~~~~~G~~~g- 78 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAG--GPAHFVGMAFGPRLG- 78 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHhHHHHhCchhH-
Confidence 67899999999999999999998766554356777788889998899999999887788765 788899999999888
Q ss_pred hhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHH
Q 013718 121 YIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSY 200 (437)
Q Consensus 121 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~~~~ 200 (437)
++......+.......+.......++...++. ..+.. ....+...+++-+.-.+..+...+++.+..+..+..
T Consensus 79 f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i 151 (410)
T PRK11021 79 RVTGWLFLSVIPVGLPAALQIAAGFGQALFGW------SSWQL-LLAELLTLALLWLLNLRGASSSANLQTVIALLIVAL 151 (410)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC------CCchH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 77766655432222222223333333332211 11111 111111111122222344555555544433222211
Q ss_pred HHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhhhHHHHH
Q 013718 201 STIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVV 280 (437)
Q Consensus 201 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~~~~~~~ 280 (437)
+. ... ..+.....+..+++ ..+.++.++..++....|+|.|.+.+....+|+ |||+| +++|++..+..++
T Consensus 152 ~~--~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~~~~~~ 221 (410)
T PRK11021 152 VV--AIW--WAGDIKPADIPFPA-PGSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRALMIGLLLA 221 (410)
T ss_pred HH--HHH--HHcCCchhcCCCCC-CCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHHHHHHH
Confidence 11 111 11111111111111 123467788999999999999999999999999 89986 7889999999999
Q ss_pred HHHHHHHHhh
Q 013718 281 ALCYFPVALI 290 (437)
Q Consensus 281 ~~~y~~~g~~ 290 (437)
.++|++..+.
T Consensus 222 ~~lYil~~~~ 231 (410)
T PRK11021 222 GLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 22
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.54 E-value=2.4e-12 Score=130.67 Aligned_cols=246 Identities=11% Similarity=0.065 Sum_probs=157.6
Q ss_pred ccCCCchhhHHHHhhhcccccccchHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHHcchhCCC-ccccCHHHHHHHH
Q 013718 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGP-GVAILILSWIITLYTLWQMVEMHEMVPG-KRFDRYHELGQHA 113 (437)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~-g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~~~~y~~l~~~~ 113 (437)
++|+.+.++..+..+++++|+|++.+|...++.|-.. .++..++.++........+.|...+.|+ .. ...+..++.
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG--G~y~y~~~~ 82 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG--GIYAYAREG 82 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhH
Confidence 3678999999999999999999999999987766433 3556778888888888888998777776 44 677888999
Q ss_pred hCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhH-HHHHHHHHHhCCCCchhhHHHHHH
Q 013718 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIM-IFASVHFVLSHLPNFNAIAGVSLA 192 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~i~pl~~~~~l~~l~~~s~~ 192 (437)
+||++| ++......+.......++.....+++..+.+..... . ....+.. +...+++-..-.+..+...+++.+
T Consensus 83 ~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~--~--~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~ 157 (473)
T TIGR00905 83 FGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG--N--PVPSILGASVLLWVFTFLVLRGVRQAAFINTI 157 (473)
T ss_pred cccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--C--cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999888 777777665554445555555555555555422100 0 1111111 111112222334466666666666
Q ss_pred HHHHHHHHHHHHhhhheeccCCCCccccc-cc--cCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCccc
Q 013718 193 AAVMSLSYSTIAWSASVRKGVQPDVAYGY-KA--KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (437)
Q Consensus 193 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~ 269 (437)
.....+...++.+...+.....++...++ +. ......+..+..++....|+|.|.+......+|+ || +++.
T Consensus 158 ~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~--~r~i 231 (473)
T TIGR00905 158 TTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRA----KN--KSDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hc--cccc
Confidence 55433322211111111111011100011 00 0112345678888999999999999999999999 77 4478
Q ss_pred chhhhhHHHHHHHHHHHHHhhhhhc
Q 013718 270 WRGVVVAYIVVALCYFPVALIGYWM 294 (437)
Q Consensus 270 ~~~~~~~~~~~~~~y~~~g~~gy~~ 294 (437)
+|++..+..++.++|++........
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~~ 256 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLGV 256 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999998887654433
No 23
>PRK10249 phenylalanine transporter; Provisional
Probab=99.53 E-value=1.8e-12 Score=130.97 Aligned_cols=241 Identities=13% Similarity=0.077 Sum_probs=151.9
Q ss_pred cccCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHh
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (437)
+.+|+.+.++..+..++.++|+|++..|....+.+-...++..++.+++....+..+.|...+.|... +..+.+++.+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G--g~~~y~~~~~ 95 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG--SFAHFAYKYW 95 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHh
Confidence 45688999999999999999999999997655443345777788899999999999999887777765 8889999999
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~ 194 (437)
|+.+| +++.....+.......+.....+.+++.+.+ ......+..++..++..+. .+..+..+++..+..
T Consensus 96 g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~l~~~lN-~~gv~~~~~i~~~~~ 165 (458)
T PRK10249 96 GPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQYWFP--------DVPTWIWAAAFFIIINAVN-LVNVRLYGETEFWFA 165 (458)
T ss_pred ChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------cCcHHHHHHHHHHHHHHHH-HhcchhhhhHHHHHH
Confidence 99888 8887776665544444444444443332211 1111222222222222222 234444444333222
Q ss_pred HH---HHHHHHHHhhhheeccCC-C--Ccccccc-ccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCc
Q 013718 195 VM---SLSYSTIAWSASVRKGVQ-P--DVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 267 (437)
Q Consensus 195 ~~---~~~~~~i~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~ 267 (437)
+. .++.+++........+.. + +.+..++ +...+.++.++..++....|+|.|.+.+....+|+ |||+|
T Consensus 166 ~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~k- 240 (458)
T PRK10249 166 LIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPEK- 240 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHhh-
Confidence 11 111111111111111111 1 1111111 11124567788999999999999999999999999 89987
Q ss_pred ccchhhhhHHHHHHHHHHHHHhhhh
Q 013718 268 PMWRGVVVAYIVVALCYFPVALIGY 292 (437)
Q Consensus 268 ~~~~~~~~~~~~~~~~y~~~g~~gy 292 (437)
+++|++..+.....++|........
T Consensus 241 ~iPrai~~~~~~~~~~y~~~~~~~~ 265 (458)
T PRK10249 241 SIPKAVNQVVYRILLFYIGSLVVLL 265 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999977554433
No 24
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.52 E-value=3.9e-12 Score=130.98 Aligned_cols=356 Identities=12% Similarity=0.052 Sum_probs=206.0
Q ss_pred cccCCCchhhHHHHhhhcccccccchHHHHHH--hcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMA--QLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~--~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~ 112 (437)
+.+|+.+.++.++..++.++|+|++.+|.... .+|- ..++..++.++.+......+.|...+.|... +.....++
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp-~~~ls~liagv~~l~~al~yaElas~~P~sG--g~Y~y~~~ 101 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGP-AIVLSFLISGLAAVLSGFCYAEFGARVPKAG--SAYLYSYV 101 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cceeeHHH
Confidence 45788999999999999999999999997543 4563 3566678888888888999999877777654 66677788
Q ss_pred HhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcC---C----C-CCcc-chhhhHHHHHHHHHHhCCCCc
Q 013718 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE---P----C-KEIK-LSYFIMIFASVHFVLSHLPNF 183 (437)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~---~----~-~~~~-~~~~~~i~~~~i~pl~~~~~l 183 (437)
.+|+.++ +++.....+.......+.....++++..++....+. + . +... ......+..++++-....+..
T Consensus 102 ~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gi 180 (557)
T TIGR00906 102 TVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGV 180 (557)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhch
Confidence 8998888 888877776655555555556666666665431110 0 0 0000 111111111222222334567
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhheeccCCCCccccc---cccCccchHhHHHHhhhhhhhhcccceeeccccccCCcC
Q 013718 184 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGY---KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPST 260 (437)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~ 260 (437)
+..++++.+..+..+..+.+++...+.+....+..... .+...+.++.+++.+.....|+|.|.+.+....+|+
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~--- 257 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV--- 257 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc---
Confidence 77777766665544433222222222222111111000 011123456788999999999999999999999999
Q ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHHhhhhhccccc---chh---hhhhCCCCchHHHHHHHHHHHHHHHhhcceecc
Q 013718 261 PEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK---VED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAM 334 (437)
Q Consensus 261 ~k~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~---~~~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~ 334 (437)
|||+| ++++++..++.+++++|.++.+.-....+.+ .++ ....... .++...+..+......+.+......
T Consensus 258 -knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~ 334 (557)
T TIGR00906 258 -KNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG-WGPAKYIVAVGALCGMSTSLLGGMF 334 (557)
T ss_pred -cCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89987 7889999999999999998876543333211 111 1222222 2344444445555555554444455
Q ss_pred chHHHHHHHHhhhc------CCCccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeee
Q 013718 335 PVFDMIETLLVKKL------NFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 335 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l 403 (437)
...+.+..+-+++. +.++++...+.......+++.+++.. .+++.+.++.. .+..+.|.+++...+
T Consensus 335 ~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~-~~~~~l~~l~s--ig~ll~y~lv~~~~l 406 (557)
T TIGR00906 335 PLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFL-FDLKALVDLLS--IGTLLAYSLVAACVL 406 (557)
T ss_pred HHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHH-cCHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 55555555543321 00111111112222222333333433 35666666542 234688888866555
No 25
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.51 E-value=6.8e-13 Score=129.95 Aligned_cols=331 Identities=15% Similarity=0.187 Sum_probs=202.5
Q ss_pred CCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCccc
Q 013718 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (437)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 118 (437)
+.|.+|..+.++++++|+|++.+|...++.+--.+++..++.+++......++.+...++|++ +..|..++.+||+.
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~---~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK---NFSEILSKYLGKIL 78 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhhHHH
Confidence 578899999999999999999999998876666788888999999999999999988877753 79999999999888
Q ss_pred cchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhh-HHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q 013718 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFI-MIFASVHFVLSHLPNFNAIAGVSLAAAVMS 197 (437)
Q Consensus 119 g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~ 197 (437)
| .+.......+............++.+.... . + +.+.+. .+..+++.-....+.++...+++.+-....
T Consensus 79 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l----~--~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~ 148 (359)
T TIGR00912 79 G-RLLSILFILYFFLIAAYLIRIFADFIKTYL---L----P--RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIF 148 (359)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c----C--CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 8 666666666555554444444444443221 1 0 112232 222223333334467888888888777654
Q ss_pred HHH-HHHHhhhheeccCCCCccccccccCccchHhHHHHhhh-hhhhhcccceeeccccccCCcCCCCCCCcccchhhhh
Q 013718 198 LSY-STIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALG-DVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVV 275 (437)
Q Consensus 198 ~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~~ 275 (437)
+.. ..+.......+....+..|. .+.++.+...+.- ...++|.+...+....+++ |||++ .+|+...
T Consensus 149 i~~~~~il~~~~~~~~~~~~l~P~-----~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~--~~k~~~~ 217 (359)
T TIGR00912 149 LILFILVLILLAPKLGNIKNLLPV-----LENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKK--IKKSIIK 217 (359)
T ss_pred HHHHHHHHHHHhcccccHHHccCc-----cccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhh--hHHHHHH
Confidence 443 12222222211111111111 1334556555554 7889999988888888888 67654 5599999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchh----h---hhhCCCCch---HHHHHHHHHHHHHHHhhcceeccchHHHHHHHHh
Q 013718 276 AYIVVALCYFPVALIGYWMFGNKVED----N---ILLSLEKPT---WLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 345 (437)
Q Consensus 276 ~~~~~~~~y~~~g~~gy~~fg~~~~~----~---il~~~~~~~---~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 345 (437)
+..++.++|....+.....+|.+..+ + .....+-.+ ....+.........+.+.-+..+.....+.+.++
T Consensus 218 ~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~ 297 (359)
T TIGR00912 218 AIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFK 297 (359)
T ss_pred HHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999988888888853322 1 111111111 1223334445566666666677777777777775
Q ss_pred hhcCCCccchhhhhhhHHHHHHHHHHHhhccc-hhhh---hhhhhcchhhhhHhhhcceeee
Q 013718 346 KKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGL---LGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i---~~~~G~~~~~~l~~ilP~l~~l 403 (437)
.+++ +....-... ..+.++. .|| .... ....+ ..+....+++|.++.+
T Consensus 298 ~~~~------~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~ 349 (359)
T TIGR00912 298 KRKY------SILILPVLM--VIFSISF-FPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFI 349 (359)
T ss_pred CCCc------chhHHHHHH--HHHHHHH-ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5421 111221111 2333332 454 3321 12222 2334566778988777
No 26
>PRK15049 L-asparagine permease; Provisional
Probab=99.51 E-value=2.3e-12 Score=131.31 Aligned_cols=349 Identities=11% Similarity=0.109 Sum_probs=189.2
Q ss_pred ccCCCchhhHHHHhhhcccccccchHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHh
Q 013718 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (437)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (437)
.+|+.+.++..+..++.+||+|++..|.. ++.+| ..+++..++.+++....+..+.|.....|... +..+.+++.+
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aG-p~~il~~li~~i~~~~v~~slaELas~~P~aG--g~y~y~~~~~ 102 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAG-PALALVYLICGLFSFFILRALGELVLHRPSSG--SFVSYAREFL 102 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHh
Confidence 56889999999999999999999999974 55656 46777788889998888999999887777655 8899999999
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~ 194 (437)
|+++| +++.....+.............+.+... .+.+ .......+..++.+++..+. ....+....+..+..
T Consensus 103 G~~~g-f~~GW~~~l~~~~~~~~~~~a~~~~~~~-~~~~-----~~~~~~~~~~~~~~l~~~iN-~~gvk~~~~i~~~~~ 174 (499)
T PRK15049 103 GEKAA-YVAGWMYFINWAMTGIVDITAVALYMHY-WGAF-----GGVPQWVFALAALTIVGTMN-MIGVKWFAEMEFWFA 174 (499)
T ss_pred CcHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccC-----CCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99888 7777776654333322222222222211 1100 01111111122222222221 123344444333322
Q ss_pred HHHH---HHHHHHhhhheeccCCCC-ccccc-----cccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCC
Q 013718 195 VMSL---SYSTIAWSASVRKGVQPD-VAYGY-----KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (437)
Q Consensus 195 ~~~~---~~~~i~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~ 265 (437)
+..+ +..++........+...+ ....+ +....+.++..++.++....|+|.|.+.+....+|+ |||+
T Consensus 175 ~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----knP~ 250 (499)
T PRK15049 175 LIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC----KDPQ 250 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cChh
Confidence 2111 111111111111111110 00011 011123445566777788999999999999999999 8998
Q ss_pred CcccchhhhhHHHHHHHHHHHHHhhhhhccccc-c---hhhh---hhCCCCchHHHHHHHHHHHHHHHhhcceeccchHH
Q 013718 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-V---EDNI---LLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFD 338 (437)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~-~---~~~i---l~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~ 338 (437)
| +++|++..++....++|+..........+.+ . .++. ..... .++...+..+...+..+.+..-..+...+
T Consensus 251 r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR 328 (499)
T PRK15049 251 T-MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGR 328 (499)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 7889999888888888887665544333311 1 1121 12221 23334445555555555555444455555
Q ss_pred HHHHHHhhhc------CC-Cccchhhhh-hhHHHHHHHHHHHhhccc--hhhhhhhhhcchhhhhHhhhcceeee
Q 013718 339 MIETLLVKKL------NF-SPTRLLRFV-VRNLYVASTMFIGITFPF--FGGLLGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 339 ~~~~~~~~~~------~~-~~~~~~~~~-~~~~~~~~~~~ia~~~p~--~~~i~~~~G~~~~~~l~~ilP~l~~l 403 (437)
.+..+-+++. +. +.....+-+ ...++.++..++....|+ ++.++++.+ .+..+.|++|++.++
T Consensus 329 ~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l 401 (499)
T PRK15049 329 ILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQM 401 (499)
T ss_pred HHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 5554433221 00 111111111 111212222222222332 555566544 445788888888877
No 27
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.48 E-value=5.5e-12 Score=127.40 Aligned_cols=242 Identities=14% Similarity=0.115 Sum_probs=153.3
Q ss_pred cccCCCchhhHHHHhhhcccccccchHH-HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLP-YAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (437)
+.+|+.+.++..+..+++++|+|++.+| .+.+.+|- .+++..++.+++.......+.|...+.|+.. +..+.+++.
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G--g~~~~~~~~ 85 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG--SFSTYADDA 85 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 4678999999999999999999999999 55667774 5778888889998888999999877677655 788999999
Q ss_pred hCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHH
Q 013718 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~ 193 (437)
+||.+| +++.....+.....+.+.....+..++.+.+. .....+.++...+...+. ....+...++....
T Consensus 86 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~n-~~gv~~~~~~~~~~ 155 (452)
T TIGR01773 86 IGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD--------IPLWLFSLILTIVLTLTN-LYSVKSYGEFEFWF 155 (452)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------CcHHHHHHHHHHHHHHHH-HHhcchhhHHHHHH
Confidence 999888 88777777666555555555555555443221 111111111211111111 12333333333332
Q ss_pred HHHHH---HHHHHHhhhheeccCCCCc----ccccc-ccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCC
Q 013718 194 AVMSL---SYSTIAWSASVRKGVQPDV----AYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (437)
Q Consensus 194 ~~~~~---~~~~i~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~ 265 (437)
.+..+ ...++.............. +...+ +...+.++.++..++....|+|.|.+.+....+|+ |||+
T Consensus 156 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~----k~P~ 231 (452)
T TIGR01773 156 ALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES----SNPI 231 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh----cChh
Confidence 22111 1111111110111111100 10001 11123455679999999999999999999999999 8998
Q ss_pred CcccchhhhhHHHHHHHHHHHHHhhhhhc
Q 013718 266 KGPMWRGVVVAYIVVALCYFPVALIGYWM 294 (437)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~~ 294 (437)
| +.+|++..+......+|+.........
T Consensus 232 r-~iPrAi~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 232 K-SITRATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHeeE
Confidence 6 778998888888888888765544433
No 28
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.47 E-value=6e-12 Score=135.61 Aligned_cols=247 Identities=14% Similarity=0.152 Sum_probs=161.9
Q ss_pred cccCCCchhhHHHHh-hhcccccccch-HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchh-CCCccccCHHHHHH
Q 013718 35 TSSRNAKWWYSAFHN-VTAMVGAGVLS-LPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM-VPGKRFDRYHELGQ 111 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l-~~~~iG~GiL~-LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~~~~~y~~l~~ 111 (437)
.+.++.++++.++.- +.+++|+|++- +++...++|...+++.++++++++..+...+.+.... .++.. .-..+.+
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG--G~Y~yis 150 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG--GAYYLIS 150 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHH
Confidence 345688999999998 99999999955 5566779998878888999999999999999997654 44333 5667788
Q ss_pred HHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcC--CCCCccchhhhHHHHHHHHHHhCCCCchhhHHH
Q 013718 112 HAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE--PCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (437)
Q Consensus 112 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~ 189 (437)
+.+|+.+| ..+.+...+.+...+..|.+..++++..+++..... .......+.+..+..+++..+. ....+..+++
T Consensus 151 ralGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak~ 228 (953)
T TIGR00930 151 RSLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAGMEWENKA 228 (953)
T ss_pred HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 89999888 888888888777788889888999888877542100 0000011222222222222233 2345555555
Q ss_pred HHHHHHHHHHHHHHHhhhheeccCCCCcc---cc-----ccc--c-CccchHhHHHHhhhhhhhhcccceeeccccccCC
Q 013718 190 SLAAAVMSLSYSTIAWSASVRKGVQPDVA---YG-----YKA--K-TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIP 258 (437)
Q Consensus 190 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~-----~~~--~-~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~ 258 (437)
+.+..+..++.++.+++..+... .+... .. +.+ . ..+....+++..++++.+||.|......+..|+
T Consensus 229 q~vl~vi~ll~ll~~iig~~~~~-~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl- 306 (953)
T TIGR00930 229 QVLFLVIVLLSILNIFVGTIIPA-FDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL- 306 (953)
T ss_pred HHHHHHHHHHHHHHHHheeeecC-CCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 55544433332222222222111 00000 00 000 0 001112237788899999999999999999999
Q ss_pred cCCCCCCCcccchhhhhHHHHHHHHHHHHHhhh
Q 013718 259 STPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 291 (437)
Q Consensus 259 ~~~k~p~~~~~~~~~~~~~~~~~~~y~~~g~~g 291 (437)
|||+| .+++++..+..+++++|+++.+..
T Consensus 307 ---KnP~r-~IPratl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 307 ---KDPQK-AIPKGTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred ---cChhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 789999999999999999987643
No 29
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.47 E-value=2.4e-11 Score=124.26 Aligned_cols=249 Identities=12% Similarity=0.149 Sum_probs=147.3
Q ss_pred ccccCCCchhhHHHHhhhcccccccchHHHHHH-hcCchhHH--HHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHH
Q 013718 34 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMA-QLGWGPGV--AILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELG 110 (437)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~-~~G~~~g~--i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~ 110 (437)
.+.+|+.+.++.+...+++++|+|++..|.... .+| ..|. +..++.+++.......+.|.....|+.. ...+..
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G-~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sG--G~y~~~ 114 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAG-SVGLALIMWAVCGIFSIVGALVYAELGTTIPKSG--GEYNYI 114 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhH
Confidence 346788999999999999999999999997654 455 3343 4556777778888888888877677654 677888
Q ss_pred HHHhCccccchhhHHHHHHH-HhHHhhhhHhhhccchHH-HHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHH
Q 013718 111 QHAFGEKLGLYIVVPQQLIV-EVGVCIVYMVTGGKSLHK-VHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (437)
Q Consensus 111 ~~~~G~~~g~~~~~~~~~~~-~~g~~~~y~i~~~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~ 188 (437)
++.+|++++ ++........ ..+.+..+....++++.. +.+. ...+.+... .+.+..+.++-..-.+..+...+
T Consensus 115 ~~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~---~~~~~~~~~-~i~~~~i~~~~~ln~~Gvk~~~~ 189 (501)
T TIGR00911 115 LEVFGPLLA-FLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD---CEVPEWAIR-LVAVLCVLLLTLVNCLSVKWATR 189 (501)
T ss_pred HhHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCchHHHH-HHHHHHHHHHHHHHHhhhHHHHH
Confidence 889999877 6555443321 122233333334443311 1111 000111111 11111111122222335566666
Q ss_pred HHHHHHHHHHHHHHHHhhhh---eeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCC
Q 013718 189 VSLAAAVMSLSYSTIAWSAS---VRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (437)
Q Consensus 189 ~s~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~ 265 (437)
++.+.....+..+++.+... ..++...+.++...-.....+..++..++....|+|.|.+.+....+|+ |||+
T Consensus 190 ~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~ 265 (501)
T TIGR00911 190 VQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPY 265 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCch
Confidence 65555543333222111111 1111111111110000112345678889999999999999999999999 8997
Q ss_pred CcccchhhhhHHHHHHHHHHHHHhhhhhcc
Q 013718 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMF 295 (437)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~~f 295 (437)
| +.+|++..+..++.++|++..+......
T Consensus 266 r-~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 266 R-TLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6 7889999999999999999866544333
No 30
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.45 E-value=1.1e-11 Score=125.53 Aligned_cols=240 Identities=13% Similarity=0.107 Sum_probs=145.6
Q ss_pred cccCCCchhhHHHHhhhcccccccchHHH-HHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~-~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (437)
+.+|+.+.++.....++.+||+|++..|. +++++|- ..+...++++++.......+.|.....+.. .++.+.+++.
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~--~~~~~ya~~~ 93 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEY--KSFSDFASDL 93 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHH
Confidence 46789999999999999999999999876 5667775 456667777887777777777765433332 2677899999
Q ss_pred hCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHH
Q 013718 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~ 193 (437)
+|+..| +++.....+.......+.....+.++..+.+. .....+..++..++..+. ....+....++.+.
T Consensus 94 ~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~--------~~~~~~~~~~~~~~~~iN-~~g~~~~~~i~~~~ 163 (469)
T PRK11049 94 LGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWFPD--------LSDWVASLAVVLLLLSLN-LATVKMFGEMEFWF 163 (469)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 999888 88888777655444444444444444332221 111222222222222222 22445555554443
Q ss_pred HHHHHHHHHH--Hhhhh-eeccC-CCC-----ccccccc-cCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCC
Q 013718 194 AVMSLSYSTI--AWSAS-VRKGV-QPD-----VAYGYKA-KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 263 (437)
Q Consensus 194 ~~~~~~~~~i--~~~~~-~~~~~-~~~-----~~~~~~~-~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~ 263 (437)
.+..+...++ +.... ...+. .+. .++.+++ ...+.++.++..++....|+|.|.+.+....+|+ ||
T Consensus 164 ~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----kn 239 (469)
T PRK11049 164 AMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET----KD 239 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----cC
Confidence 3322211111 11111 11110 110 0000111 1123456678999999999999999999999999 89
Q ss_pred CCCcccchhhhhHHHHHHHHHHHHHhhhh
Q 013718 264 PSKGPMWRGVVVAYIVVALCYFPVALIGY 292 (437)
Q Consensus 264 p~~~~~~~~~~~~~~~~~~~y~~~g~~gy 292 (437)
|+| +++|++..+.....++|.+......
T Consensus 240 P~r-~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 240 PEK-SLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred Hhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 976 7789998777777778876665443
No 31
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.45 E-value=1.7e-11 Score=123.64 Aligned_cols=240 Identities=16% Similarity=0.176 Sum_probs=143.5
Q ss_pred cccCCCchhhHHHHhhhcccccccchHHHHH-HhcCch-hHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAM-AQLGWG-PGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f-~~~G~~-~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~ 112 (437)
+.+|+.+.++.+...++.++|+|++..|... +..|-. ..++..++.+++.......+.|.....|+.. ......++
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~G--G~y~y~~~ 82 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENG--ADYVYLKN 82 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CceeeHHH
Confidence 3578899999999999999999999999874 455643 3455677888888888888999877666544 45556778
Q ss_pred HhCccccchhhHHHHHH-HHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHH
Q 013718 113 AFGEKLGLYIVVPQQLI-VEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSL 191 (437)
Q Consensus 113 ~~G~~~g~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~ 191 (437)
.+||.++ +++...... ........+....++++....+ ..... .....+.....+-..-.+..+...+++.
T Consensus 83 ~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~------~~~~~-~~~~~~~~~~~~~~ln~~gv~~~~~v~~ 154 (445)
T PRK11357 83 AGSRPLA-FLSGWASFWANDAPSLSIMALAIVSNLGFLTP------IDPLL-GKFIAAGLIIAFMLLHLRSVEGGAAFQT 154 (445)
T ss_pred hcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CchHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8998877 666654332 2222233344444444432211 01000 0111111111111222234555555554
Q ss_pred HHHHHHHHHHHHHhh--hheeccCCCCcccccc-ccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcc
Q 013718 192 AAAVMSLSYSTIAWS--ASVRKGVQPDVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (437)
Q Consensus 192 ~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~ 268 (437)
+..+..+...++++. ....++.+ .+...+ ......++.++..++....|+|.|.+.+....+|+ |||+| +
T Consensus 155 ~~~~~~~~~l~~~ii~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~ 227 (445)
T PRK11357 155 LITIAKIIPFTIVIGLGIFWFKAEN--FAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEI----KNPGK-T 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcc--ccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc-c
Confidence 444333221111111 11111111 110000 01111235678888999999999999999999999 89986 7
Q ss_pred cchhhhhHHHHHHHHHHHHHhhh
Q 013718 269 MWRGVVVAYIVVALCYFPVALIG 291 (437)
Q Consensus 269 ~~~~~~~~~~~~~~~y~~~g~~g 291 (437)
++|++..+..++.++|++.....
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998876643
No 32
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.43 E-value=2.3e-11 Score=122.85 Aligned_cols=236 Identities=13% Similarity=0.089 Sum_probs=149.9
Q ss_pred cccCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHh
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (437)
+.+|+.+.++..+..++.+||+|++..|....+.+-...++..++.+++.......+.|...+.|... ++.+.+++.+
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG--g~y~~~~~~~ 86 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAG--SFSHFAYKYW 86 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHc
Confidence 35788999999999999999999999997755544445566678888888888888889877777655 8888899999
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~ 194 (437)
||..| +++.....+.......+.....+++++...+. .....+..++..+...+.. ...+....++.+..
T Consensus 87 g~~~g-f~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~--------~~~~~~~~i~~~~~~~lN~-~gv~~~~~~~~~~~ 156 (456)
T PRK10238 87 GSFAG-FASGWNYWVLYVLVAMAELTAVGKYIQFWYPE--------IPTWVSAAVFFVVINAINL-TNVKVFGEMEFWFA 156 (456)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------CcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 98888 88888887777766666666666655433221 1122222222222222222 23444444444333
Q ss_pred HHHHHH---HHH-HhhhheeccCCCC--cccccccc-CccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCc
Q 013718 195 VMSLSY---STI-AWSASVRKGVQPD--VAYGYKAK-TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 267 (437)
Q Consensus 195 ~~~~~~---~~i-~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~ 267 (437)
+..+.. +++ .+.........+. ....+++. ..+..+.++..+++...|+|.|.+.+....+|+ |||+|
T Consensus 157 ~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r- 231 (456)
T PRK10238 157 IIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ- 231 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh-
Confidence 322211 111 1111111101111 11111111 113445677788889999999999999999999 89976
Q ss_pred ccchhhhhHHHHHHHHHHHH
Q 013718 268 PMWRGVVVAYIVVALCYFPV 287 (437)
Q Consensus 268 ~~~~~~~~~~~~~~~~y~~~ 287 (437)
+++|++..+.....+.|...
T Consensus 232 ~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 232 SIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78899887777777777654
No 33
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.42 E-value=3e-11 Score=122.55 Aligned_cols=244 Identities=12% Similarity=0.131 Sum_probs=146.3
Q ss_pred ccCCCchhhHHHHhhhcccccccchHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHh
Q 013718 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAM-AQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (437)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f-~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (437)
.+|+.+.++.....++.++|+|++..|... +.+|-...++..++.+++.......+.|...+.|+.. .+.+..++.+
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG--G~y~y~~~~~ 89 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG--AFHVYAARYL 89 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHhc
Confidence 568899999999999999999999888775 5556433566678888888888999999877777655 7889999999
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~ 194 (437)
|+++| +++.....+.............+..+..+.+ ......+.+++.+++..+. .+..+.....+....
T Consensus 90 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~~~~~~~~~~~~~~~in-~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 90 GPATG-YTVAWLYWLTWTVALGSSLTAAGFCMQYWFP--------QVPVWPWCLLFCALIFGLN-VVSTRFFAEGEFWFS 159 (471)
T ss_pred ChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------cCcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 99888 7777766655444433333333222221111 1111122222222222222 233444443332222
Q ss_pred HHHHHH--HHHHh--hhhe--eccCCCCcccc---ccc-cCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCC
Q 013718 195 VMSLSY--STIAW--SASV--RKGVQPDVAYG---YKA-KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (437)
Q Consensus 195 ~~~~~~--~~i~~--~~~~--~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p 264 (437)
...+.. .++++ .... ......+..+. +.. ...+.+..++..++....|+|.|.+.+....+|+ |||
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP 235 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET----ENP 235 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCh
Confidence 111111 11111 1100 00000000011 111 1112334567888888999999999999999999 899
Q ss_pred CCcccchhhhhHHHHHHHHHHHHHhhhhhccc
Q 013718 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 296 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg 296 (437)
+| +++|++..+..+..++|+...+......+
T Consensus 236 ~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 236 AK-VIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 86 78899999999999999888765444333
No 34
>PRK10746 putative transport protein YifK; Provisional
Probab=99.40 E-value=7.1e-11 Score=119.30 Aligned_cols=349 Identities=12% Similarity=0.079 Sum_probs=192.9
Q ss_pred ccCCCchhhHHHHhhhcccccccchHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHh
Q 013718 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (437)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (437)
.+|+.+.++..+..++++||+|++..|.. .+.+|- ..++..++.+++.+..+..+.|.....|... ++.+.+++.+
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG--g~~~y~~~~~ 84 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG--SFAVYAHRYM 84 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHh
Confidence 56889999999999999999999998866 445554 4556678888888888888999877677655 8999999999
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHH--
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA-- 192 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~-- 192 (437)
||++| +++.....+.......+.....+.+++.+.+. .....+..++..++.-+.+ ...+....+...
T Consensus 85 g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~--------~~~~~~~~~~~~~~~~lN~-~gv~~~~~~e~~~~ 154 (461)
T PRK10746 85 SPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWFPE--------MAQWIPALIAVALVALANL-AAVRLYGEIEFWFA 154 (461)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------CchHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 99888 88888777665555555555555544333221 1222232232222222222 223333332221
Q ss_pred --HHHHHHHHHHHHhhhh-eeccCCCC-cc-cccc--ccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCC
Q 013718 193 --AAVMSLSYSTIAWSAS-VRKGVQPD-VA-YGYK--AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (437)
Q Consensus 193 --~~~~~~~~~~i~~~~~-~~~~~~~~-~~-~~~~--~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~ 265 (437)
.+...+..+++.+... ...+...+ .. .++. +...+.++.++..++....|+|.|.+.+....+|+ |||+
T Consensus 155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP~ 230 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA----KNPQ 230 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cChh
Confidence 1111111111111111 11111100 00 0111 11124457788999999999999999999999999 8998
Q ss_pred CcccchhhhhHHHHHHHHHHHHHhhhhhcccccch----hh---hhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHH
Q 013718 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE----DN---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFD 338 (437)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~----~~---il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~ 338 (437)
| +++|++..+.....++|+............+.. ++ ...+.. .+....+.++...+..+.+..-..+...+
T Consensus 231 k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g-~~~~~~i~~~~il~a~~s~~n~~~~~~sR 308 (461)
T PRK10746 231 V-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIG-ITAAAGIINFVVLTAALSGCNSGMYSCGR 308 (461)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 788999888888888888765444333332111 11 112221 12223344455555555554444555555
Q ss_pred HHHHHHhhhc------CC-Cccchhhhh-hhHHHHHHHHHHHhhccchhhhhhhhhcch--hhhhHhhhcceeee
Q 013718 339 MIETLLVKKL------NF-SPTRLLRFV-VRNLYVASTMFIGITFPFFGGLLGFFGGFA--FAPTTYFVSQILPL 403 (437)
Q Consensus 339 ~~~~~~~~~~------~~-~~~~~~~~~-~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~--~~~l~~ilP~l~~l 403 (437)
.+..+-+++. +. +.....+-+ ......+....+....|+-+.+++..-+++ +..+.++++++.++
T Consensus 309 ~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i 383 (461)
T PRK10746 309 MLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQL 383 (461)
T ss_pred HHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543321 00 111111111 111112222333334565455444433322 24677777777766
No 35
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.38 E-value=1.3e-10 Score=116.99 Aligned_cols=237 Identities=14% Similarity=0.117 Sum_probs=151.3
Q ss_pred ccCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhC
Q 013718 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (437)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (437)
.+|+.+.++.....++.++|......+.++++.|...-++..++.+++....+..+.|...+.|+.. ......++.+|
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G--g~y~~~~~~~G 82 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG--GGYGFARRAFG 82 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHhC
Confidence 5688999999999999999855566688888888864455566677777777788889877777655 78889999999
Q ss_pred ccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 013718 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (437)
Q Consensus 116 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~ 195 (437)
+++| +++.....+.......++....++++..+++.. ....+.+++..+.. ..-.+..+...+++.+..+
T Consensus 83 ~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~--------~~~~~~~~~~~~~~-~ln~~g~~~~~~i~~~~~~ 152 (442)
T TIGR00908 83 PWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPVG--------PGWLAALVFYIVFI-GINILGVGEAAKLEFVVTA 152 (442)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------chhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHH
Confidence 9888 888887777666666677777777776654321 11111221111111 1122244444444443333
Q ss_pred HHHHHHHHHhhhheeccCCCCc-ccccc--ccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchh
Q 013718 196 MSLSYSTIAWSASVRKGVQPDV-AYGYK--AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRG 272 (437)
Q Consensus 196 ~~~~~~~i~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~ 272 (437)
..++.+.+.......+....+. ..... +...+..+.++..++....|+|.|.+.+....+|+ |||+| +.+|+
T Consensus 153 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~ipra 227 (442)
T TIGR00908 153 VAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKR-DIPRG 227 (442)
T ss_pred HHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-ccCHH
Confidence 2222111111111111000000 00000 11123345678888999999999999999999999 89986 77899
Q ss_pred hhhHHHHHHHHHHHHHh
Q 013718 273 VVVAYIVVALCYFPVAL 289 (437)
Q Consensus 273 ~~~~~~~~~~~y~~~g~ 289 (437)
+..+..++.++|+..-.
T Consensus 228 i~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 228 LIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988888876644
No 36
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.37 E-value=1e-10 Score=118.23 Aligned_cols=240 Identities=13% Similarity=0.137 Sum_probs=148.1
Q ss_pred cccCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHh
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (437)
+.+|+.+.++..+..+++++|+|++.+|....+.+....++..++.+++.......+.|...+.|... +..+.+++.+
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G--g~y~y~~~~~ 83 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAAS--SFSRYAQENL 83 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHc
Confidence 35688999999999999999999999997744443345677788888898999999999887777654 7888999999
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~ 194 (437)
||.+| +++.....+.............+.++..+.+ ......+.+...++...+ -.+..+....+..+..
T Consensus 84 G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~l-n~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 84 GPLAG-YITGWTYCFEILIVAIADVTAFGIYMGVWFP--------TVPHWIWVLSVVLIICAV-NLMSVKVFGELEFWFS 153 (457)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCChHHHHHHHHHHHHHH-HHccchhHHHHHHHHH
Confidence 99888 7777776655444343333333333332221 111222322222222222 2234455544443332
Q ss_pred HHHHH---HHHHH---h-hhheeccCC-CCcccccc-ccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCC
Q 013718 195 VMSLS---YSTIA---W-SASVRKGVQ-PDVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (437)
Q Consensus 195 ~~~~~---~~~i~---~-~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~ 265 (437)
+..+. ..++. + .....+... .+....++ +...+.++.++..++....|+|.|.+.+....+|+ |||+
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~ 229 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----KDPE 229 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChh
Confidence 21111 11110 0 111111101 11111111 11224456688889999999999999999999999 8998
Q ss_pred CcccchhhhhHHHHHHHHHHHHHhhh
Q 013718 266 KGPMWRGVVVAYIVVALCYFPVALIG 291 (437)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~y~~~g~~g 291 (437)
| +.+|++..+.....++|.......
T Consensus 230 k-~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 230 K-SIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 677888888777777887765443
No 37
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.37 E-value=2.1e-11 Score=117.35 Aligned_cols=332 Identities=15% Similarity=0.170 Sum_probs=213.0
Q ss_pred cccCCCchhhHHHHhhhccccccc-chHHHHHHhcCchhHHHH-HHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAI-LILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~f~~~G~~~g~i~-l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~ 112 (437)
+.+|+.+.++--+.-++..||+|. ++-..+.+.+| +++++ ..+++++.+.-++.+.|...+.|..+ |+.+.+++
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~g--SF~~~a~~ 85 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVANPVSG--SFSDYARK 85 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cHHHHHHH
Confidence 356888899999999999999998 77888899999 56655 68889999999999999877666655 99999999
Q ss_pred HhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHH--HHHhCCCCchhhH-HH
Q 013718 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH--FVLSHLPNFNAIA-GV 189 (437)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i--~pl~~~~~l~~l~-~~ 189 (437)
.+|+++| ++......+....++.+-+..++.+++..++.. .+..+.++..+++ .-+...|....+- |+
T Consensus 86 ~lG~~Ag-f~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v--------P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWf 156 (462)
T COG1113 86 YLGPWAG-FLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV--------PQWVFALAAVVLLLAVNLISVKVFGELEFWF 156 (462)
T ss_pred HhcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 999999999999999999999999988887642 2233334433333 3344455555554 45
Q ss_pred HHHHHHHHHHHHHHHhhhheeccCCC-----Cccccc-cccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCC
Q 013718 190 SLAAAVMSLSYSTIAWSASVRKGVQP-----DVAYGY-KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 263 (437)
Q Consensus 190 s~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~ 263 (437)
+++-+...+...++.. ..+..+... +.+.-+ +....|+++.+++.++-+.+|||.+.+.+-....|- ||
T Consensus 157 AlIKV~aIi~~Iv~G~-~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~d 231 (462)
T COG1113 157 ALIKVAAIIAFIVVGI-VLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA----KD 231 (462)
T ss_pred HHHHHHHHHHHHHHHH-HHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----cC
Confidence 5555443332222211 112211111 111111 224568889999999999999999999999999998 89
Q ss_pred CCCcccchhhhhHHHHHHHHHH-----HHHhhhhhcccccchh--hhhhCCCCchHHHHHHHHHHHHHHHhhcceeccch
Q 013718 264 PSKGPMWRGVVVAYIVVALCYF-----PVALIGYWMFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 336 (437)
Q Consensus 264 p~~~~~~~~~~~~~~~~~~~y~-----~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~ 336 (437)
|+| .++|++..-..-..++|+ +..+.-+-.++++..+ .++..+. -++...+.++.+..+...+.---.+..
T Consensus 232 P~k-~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iG-i~~Aa~i~N~VVLtAa~S~~NSglyst 309 (462)
T COG1113 232 PEK-AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIG-IPFAAGIMNFVVLTAALSALNSGLYST 309 (462)
T ss_pred hhh-HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcC-CcccccceeEEEeechhhccccccccc
Confidence 987 667777655555555553 3344444444443322 2222222 123344445545555555555556666
Q ss_pred HHHHHHHHhhhcC------CCccc--hhhhhhhHHHHHHHHHHHhhccc--hhhhhhhhh
Q 013718 337 FDMIETLLVKKLN------FSPTR--LLRFVVRNLYVASTMFIGITFPF--FGGLLGFFG 386 (437)
Q Consensus 337 ~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~ia~~~p~--~~~i~~~~G 386 (437)
.+.+..+-.+++. .+++. ..-+....+..++..++.+..|. |+.+.+..+
T Consensus 310 sRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~ 369 (462)
T COG1113 310 SRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSG 369 (462)
T ss_pred chHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 6666665433221 01111 22345566777788888888883 444444433
No 38
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.36 E-value=1.8e-10 Score=116.87 Aligned_cols=292 Identities=14% Similarity=0.140 Sum_probs=168.3
Q ss_pred CCCchhhHHHHhhhcccccccchHHHHHHh-cCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCc-cccCHHHHHHHHhC
Q 013718 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQ-LGWGPGVAILILSWIITLYTLWQMVEMHEMVPGK-RFDRYHELGQHAFG 115 (437)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~-~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~-~~~~y~~l~~~~~G 115 (437)
|+.+.++.+...+++++|+|++.+|....+ +|-...++..++.++........+.|...+.|+. . ...+.+++.+|
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gG--G~y~y~~~~fG 78 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDG--GVYSYAKAGFG 78 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhHcC
Confidence 568899999999999999999999988664 4433345557888888888888888887767652 2 56777999999
Q ss_pred ccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHH-HHHHHHHhCCCCchhhHHHHHHHH
Q 013718 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIF-ASVHFVLSHLPNFNAIAGVSLAAA 194 (437)
Q Consensus 116 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~-~~~i~pl~~~~~l~~l~~~s~~~~ 194 (437)
|..| +++.....+.......+|.....+.+....+.... ..+...+.... .+..+-....+..+..++++.+..
T Consensus 79 ~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~ 153 (468)
T TIGR03810 79 PFMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG----GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITT 153 (468)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC----CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9888 77777766655444455555544444443332210 00111111111 111122222355666666665554
Q ss_pred HHHHHHHHHHhh--hheeccCCCCcc-cc-cc-ccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCccc
Q 013718 195 VMSLSYSTIAWS--ASVRKGVQPDVA-YG-YK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (437)
Q Consensus 195 ~~~~~~~~i~~~--~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~ 269 (437)
+..+....+.+. ....++.....+ +. .+ .......+.++..++....|+|.|.+......+|. || ++++
T Consensus 154 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~--~k~i 227 (468)
T TIGR03810 154 IAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARA----EK--RSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhc----cC--cccc
Confidence 433221111111 111111110000 00 00 00112234567788899999999999999999998 65 3477
Q ss_pred chhhhhHHHHHHHHHHHHHhhhhhccccc----chh----hhhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHH
Q 013718 270 WRGVVVAYIVVALCYFPVALIGYWMFGNK----VED----NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (437)
Q Consensus 270 ~~~~~~~~~~~~~~y~~~g~~gy~~fg~~----~~~----~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 341 (437)
+|++..+...+.++|....+..+...+++ .++ .+..+.- .++...+..+...++.+.+.--......|.+.
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~ 306 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPL 306 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999887655444321 111 1222221 23444555565666665555444444444444
Q ss_pred HH
Q 013718 342 TL 343 (437)
Q Consensus 342 ~~ 343 (437)
.+
T Consensus 307 a~ 308 (468)
T TIGR03810 307 LM 308 (468)
T ss_pred HH
Confidence 33
No 39
>PRK10836 lysine transporter; Provisional
Probab=99.34 E-value=2e-10 Score=117.09 Aligned_cols=244 Identities=16% Similarity=0.196 Sum_probs=143.2
Q ss_pred cccCCCchhhHHHHhhhcccccccchHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (437)
+.+|+.+.++..+..++++||+|++.+|.. .+++|-...++..++.+++....+..+.|...+.|... +..+.+++.
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG--g~y~y~~~~ 89 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG--SFATYGQNY 89 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Confidence 356889999999999999999999999975 55666433577788999999999999999888788765 888889999
Q ss_pred hCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHH---
Q 013718 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVS--- 190 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s--- 190 (437)
+|+.+| +++.....+. +....+.....+.. ++..... ......+..++..++..+.+ ...+....+.
T Consensus 90 ~g~~~g-f~~Gw~~~~~-~~~~~a~~~~a~~~---~~~~~~~----~~~~~~~~~~~~~~~~~lN~-~gv~~~~~~~~~~ 159 (489)
T PRK10836 90 VEEGFG-FALGWNYWYN-WAVTIAVDLVAAQL---VMSWWFP----DTPGWIWSALFLGVIFLLNY-ISVRGFGEAEYWF 159 (489)
T ss_pred cChHHH-HHHHHHHHHH-HHHHHHHHHHHHHH---HhhhcCC----CCchHHHHHHHHHHHHHHHH-HcchhhhhhHHHH
Confidence 998888 7666665543 22222221111211 1111110 11111122222222211111 2233222222
Q ss_pred HHHHHHHHH-HHH--HHhhhheeccCCCCcccccc--ccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCC
Q 013718 191 LAAAVMSLS-YST--IAWSASVRKGVQPDVAYGYK--AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (437)
Q Consensus 191 ~~~~~~~~~-~~~--i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~ 265 (437)
.+..+..+. +++ +.......++.......++. ....+..+..+..+.....|+|.|.+.+....+|+ |||+
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~ 235 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES----EDPA 235 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHH
Confidence 111111111 111 11111111111100000111 01112345566666667789999999999999999 8998
Q ss_pred CcccchhhhhHHHHHHHHHHHHHhhhhhcc
Q 013718 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMF 295 (437)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~~f 295 (437)
| +++|++..++..+.++|+..........
T Consensus 236 r-~iPrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 236 K-NIPRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 6 7889999999999999998866544443
No 40
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.33 E-value=2.3e-10 Score=116.45 Aligned_cols=237 Identities=14% Similarity=0.118 Sum_probs=148.6
Q ss_pred cCCCchhhHHHHhhhcccccccchHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCC-CccccCHHHHHHHHh
Q 013718 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP-GKRFDRYHELGQHAF 114 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~-f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~~~~y~~l~~~~~ 114 (437)
+|+.+.++.....++.++|+|++..|.. .+.+|-...++..++.+++.......+.|...+.| ... .|.+.+++.+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG--~~~~~~~~~~ 78 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG--SFATYASRFV 78 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHc
Confidence 4678999999999999999999988855 45555322355678888888888888999877777 333 6889999999
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~ 194 (437)
|+++| +++.....+.......+.....+..+..+.+ ......|..+..++.. +.-.+..+...+++.+..
T Consensus 79 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~in~~gv~~~~~~~~~~~ 148 (478)
T TIGR00913 79 DPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWTD--------KVNPAVWIAIFYVFIV-IINLFGVKGYGEAEFWFS 148 (478)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHH
Confidence 99888 8887777666655555555555554432211 1122233322222222 222334555555554333
Q ss_pred HHHH---HHHHHHhhhheeccCCCCc--c-------ccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCC
Q 013718 195 VMSL---SYSTIAWSASVRKGVQPDV--A-------YGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE 262 (437)
Q Consensus 195 ~~~~---~~~~i~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k 262 (437)
...+ ...++........+...+. . ..+.+......+.++..++....|+|.|.+.+....+|+ |
T Consensus 149 ~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k 224 (478)
T TIGR00913 149 SIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA----A 224 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh----c
Confidence 2111 1111111111111110000 0 001000001136678889999999999999999999999 8
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHHHhh
Q 013718 263 KPSKGPMWRGVVVAYIVVALCYFPVALI 290 (437)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~~~y~~~g~~ 290 (437)
||+| +++|++..+..++.++|++..+.
T Consensus 225 nP~r-~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 225 NPRK-SIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred Chhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9986 78899999999999999987654
No 41
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.30 E-value=1.8e-10 Score=115.63 Aligned_cols=291 Identities=13% Similarity=0.154 Sum_probs=176.2
Q ss_pred CchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHH-HHHHHHHHHcchhCCCccccCHHHHHHHHhCccc
Q 013718 40 AKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (437)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 118 (437)
.++++.+...++.++|+|++..| ..++.|.. .++..++.+.+. ......+.|...+.|+.+ ...+..++.+||++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G--G~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG--GIYVWVSRAFGPFW 76 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST--THHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC--eeeehhhhcccccc
Confidence 36889999999999999999999 66666654 565556655555 577777788766566655 88899999999988
Q ss_pred cchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhh-hHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q 013718 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYF-IMIFASVHFVLSHLPNFNAIAGVSLAAAVMS 197 (437)
Q Consensus 119 g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~-~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~ 197 (437)
| ++......+.......++.....+.+...+.... ........ +.+..++..-....+..|..++++.+.....
T Consensus 77 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 151 (426)
T PF13520_consen 77 G-FIVGWLYWVAYILSLASVASSFASYLLSLFGPDL----NPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIK 151 (426)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGG----TCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred h-hcccceeEEEeeccccccccchhhhhhhcccccc----ccccchheeeeecccccceEeeechhhhhhhhhhhhhhhh
Confidence 8 7777777777666666666666665544432100 00011111 1122222222333345666666666665544
Q ss_pred H-HHHHHHhhhheeccCCCCccc--cccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhh
Q 013718 198 L-SYSTIAWSASVRKGVQPDVAY--GYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (437)
Q Consensus 198 ~-~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~ 274 (437)
+ ..+.+.+...+.....++... ...+...+..+...+.++....|+|.|.+......+|+ || |+.+|++.
T Consensus 152 i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~---k~ip~ai~ 224 (426)
T PF13520_consen 152 IVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN---KTIPRAII 224 (426)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS---HHHHHHHH
T ss_pred hhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccc----cc---hhheeecc
Confidence 4 222222222222211111110 00011122244457899999999999999999999998 55 36779999
Q ss_pred hHHHHHHHHHHHHHhhhhhcccccchh---h-------hhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHHHH
Q 013718 275 VAYIVVALCYFPVALIGYWMFGNKVED---N-------ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLL 344 (437)
Q Consensus 275 ~~~~~~~~~y~~~g~~gy~~fg~~~~~---~-------il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~ 344 (437)
.+..++.++|.+.........+++..+ + +..... .++...+..+...+..+.+.........+.+..+-
T Consensus 225 ~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 225 ISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc-ccccccccccccccccccccchhhcchhhcccccc
Confidence 999999999999877766665542211 1 111111 13455555666666666666666666677777666
Q ss_pred hhh
Q 013718 345 VKK 347 (437)
Q Consensus 345 ~~~ 347 (437)
+++
T Consensus 304 ~d~ 306 (426)
T PF13520_consen 304 RDG 306 (426)
T ss_dssp HTT
T ss_pred ccc
Confidence 543
No 42
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.26 E-value=4.2e-10 Score=108.39 Aligned_cols=284 Identities=14% Similarity=0.172 Sum_probs=189.8
Q ss_pred CCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCccc
Q 013718 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (437)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 118 (437)
|.|..|....+..+++|+|++.+|...++.+- .|++..++.+........++.+..+++|++ +..|..++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~---~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK---TLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhCcHH
Confidence 46889999999999999999999999876663 677777777777777777777777766654 89999999999988
Q ss_pred cchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhh-HHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q 013718 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFI-MIFASVHFVLSHLPNFNAIAGVSLAAAVMS 197 (437)
Q Consensus 119 g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~ 197 (437)
| .+..+...++.+......+...++.+....-. +.+.+. ....+++.--...+.++.+.+.+.+-....
T Consensus 77 g-~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp---------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~ 146 (320)
T PF03845_consen 77 G-KIINLLYILYFLLISALVLREFSEFIKTYLLP---------ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIF 146 (320)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8 67777777776666666666666655543221 123333 333344444555678999988766666654
Q ss_pred HHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhhhHH
Q 013718 198 LSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAY 277 (437)
Q Consensus 198 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~~~~ 277 (437)
+.....+......+...++.. +..+.++.++..+.....+.|.+.....-+...+ |+|+|. .|....+.
T Consensus 147 ~i~~~~i~~~~~~~~~~~~l~-----P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~~--~k~~~~~~ 215 (320)
T PF03845_consen 147 LILLLLILLLSIPNIDWDNLL-----PVLESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKKL--KKSLLIAI 215 (320)
T ss_pred HHHHHHHHHHhcccCCHHHee-----CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchHH--HHHHHHHH
Confidence 443333333322221111111 1225567788888888888898888888888888 666654 48999999
Q ss_pred HHHHHHHHHHHhhhhhcccccchh----hhh---hCCCCc---hHHHHHHHHHHHHHHHhhcceeccchHHHHHHHHhhh
Q 013718 278 IVVALCYFPVALIGYWMFGNKVED----NIL---LSLEKP---TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK 347 (437)
Q Consensus 278 ~~~~~~y~~~g~~gy~~fg~~~~~----~il---~~~~~~---~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~ 347 (437)
.++..+|...-+.....||.+..+ +.. ...+-+ +....+.........+.+.-+..+...+.+.+.++.+
T Consensus 216 ~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 216 LISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999888888888854322 111 111111 1223334445556666666677778888888887654
No 43
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.25 E-value=6.3e-10 Score=112.07 Aligned_cols=334 Identities=15% Similarity=0.134 Sum_probs=184.1
Q ss_pred hhhcccccccchHHH-HHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCccccchhhHHHH
Q 013718 49 NVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQ 127 (437)
Q Consensus 49 l~~~~iG~GiL~LP~-~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~ 127 (437)
.++++||+|++..|. +.+++|- ..++..++.+++....+..+.|...+.|+.. +..+.+++.+||++| +++....
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G--g~y~y~~~~~G~~~g-f~~gw~~ 78 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG--SFSTYADKAIGRWAG-YTIGWLY 78 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHcChHHH-HHHHHHH
Confidence 467899999999997 6777774 5777888999999999999999887777655 899999999999888 7777777
Q ss_pred HHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHH--HHHh
Q 013718 128 LIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYS--TIAW 205 (437)
Q Consensus 128 ~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~~~~~--~i~~ 205 (437)
.+.............+..+....+ ......+..++..++..+. ....+....+..+.....+... +++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii~ 149 (446)
T PRK10197 79 WWFWVLVIPLEANIAAMILHSWVP--------GIPIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIFL 149 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--------cCcHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 665444444333333332222211 1111122222222222222 2234444444433333221111 1111
Q ss_pred hhheeccCCC-Cc----ccccc-ccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhhhHHHH
Q 013718 206 SASVRKGVQP-DV----AYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIV 279 (437)
Q Consensus 206 ~~~~~~~~~~-~~----~~~~~-~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~~~~~~ 279 (437)
......+..+ .. .+.++ +...++.+.++..++....|+|.|.+.+....+|+ |||+| +++|++..+...
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~ 224 (446)
T PRK10197 150 GAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIWR 224 (446)
T ss_pred HHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHHH
Confidence 1111111111 00 01111 11124556789999999999999999999999999 89986 788999988998
Q ss_pred HHHHHHHHHhhhhhcccccch-----h---hhhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHHHHhhhc---
Q 013718 280 VALCYFPVALIGYWMFGNKVE-----D---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL--- 348 (437)
Q Consensus 280 ~~~~y~~~g~~gy~~fg~~~~-----~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~--- 348 (437)
..++|+...+........+.. + ....... .++...+..+...+..+.+..-..+...+.+..+-+++.
T Consensus 225 i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g-~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~ 303 (446)
T PRK10197 225 ISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLN-IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA 303 (446)
T ss_pred HHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH
Confidence 999998866553333221111 1 1223332 233445555555566555555555556666555543321
Q ss_pred ---CC-CccchhhhhhhH-HHHHHHHHHHhhcc--chhhhhhhhhcchhhhhHhhhcceeee
Q 013718 349 ---NF-SPTRLLRFVVRN-LYVASTMFIGITFP--FFGGLLGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 349 ---~~-~~~~~~~~~~~~-~~~~~~~~ia~~~p--~~~~i~~~~G~~~~~~l~~ilP~l~~l 403 (437)
+. +.....+-+.-. .+.++..+.....| .++.++++.+... .+.|.++++-++
T Consensus 304 ~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i 363 (446)
T PRK10197 304 VMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQL 363 (446)
T ss_pred HHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 00 111111111111 11122222222222 3667777666444 477777766666
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.22 E-value=2.4e-09 Score=108.66 Aligned_cols=295 Identities=15% Similarity=0.218 Sum_probs=178.8
Q ss_pred cccCCCchhh-HHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHH
Q 013718 35 TSSRNAKWWY-SAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (437)
Q Consensus 35 ~~~~~~s~~~-~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (437)
+.+|+.+.++ ......+.++|.|++.+|......+ ....+..++.+++.......+.|...+.|+.. .+.+..++.
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--G~y~~~~~~ 85 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG--GAYAYAKRA 85 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--Ceeeehhhh
Confidence 3456777788 8889999999999999999988776 33333355666666666777788766666655 788999999
Q ss_pred hCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHH--HHHhCCCCchhhHHHHH
Q 013718 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH--FVLSHLPNFNAIAGVSL 191 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i--~pl~~~~~l~~l~~~s~ 191 (437)
+|++.+ +++.....+.......+......+.+..+.+...... .....+..+..+++ +-+.-.+..+...++..
T Consensus 86 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~ 161 (466)
T COG0531 86 LGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLS---IGPLLIILIALALIALLTLLNLRGIKASAKINS 161 (466)
T ss_pred cCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc---CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 998888 8888888877777777777777775555544211000 00012222222222 22222345565555555
Q ss_pred HHHHHHHHHHHHHhhhheeccCCCCccccccccC-ccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccc
Q 013718 192 AAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKT-AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 270 (437)
Q Consensus 192 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~ 270 (437)
+..+..+...++............... ...+.. .......+..++....++|.|.+.+.+..+|+ |||+| +.+
T Consensus 162 ~~~~~~i~~~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r-~ip 235 (466)
T COG0531 162 IITILKIIILLIFIILGLFAFGFSNGN-LFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPKR-TIP 235 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccc-cCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCccc-ccc
Confidence 555544433222222222221111100 110000 22344578899999999999999999999999 88876 578
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhccccc-ch-----hhh---hhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHH
Q 013718 271 RGVVVAYIVVALCYFPVALIGYWMFGNK-VE-----DNI---LLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (437)
Q Consensus 271 ~~~~~~~~~~~~~y~~~g~~gy~~fg~~-~~-----~~i---l~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 341 (437)
|++..++..+.++|+...+......+++ .. .+. ..... ..+...+..+...+..+.+.........+.+.
T Consensus 236 ~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~ 314 (466)
T COG0531 236 RAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGG-GNWGAIIIAILALLSLFGSLLAWILAVSRVLY 314 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888776666542 11 111 11111 13445555555556655555444444444444
Q ss_pred HH
Q 013718 342 TL 343 (437)
Q Consensus 342 ~~ 343 (437)
.+
T Consensus 315 ~~ 316 (466)
T COG0531 315 AM 316 (466)
T ss_pred HH
Confidence 33
No 45
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.17 E-value=1.8e-08 Score=99.42 Aligned_cols=350 Identities=13% Similarity=0.136 Sum_probs=225.3
Q ss_pred cccCCCchhhHHHHhhhccccccc-chHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (437)
+.+|+....+-.+.-++..||+|. ++.-.+.+++|=...++..++++.+.+..+..+.|.+...|... +|.+.+.+.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG--sF~~ya~rf 118 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG--SFSTYATRF 118 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhhhhh
Confidence 357888999999999999999998 68889999999777777789999999999999999887777443 799999999
Q ss_pred hCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhC--CCCchhhH-HHH
Q 013718 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH--LPNFNAIA-GVS 190 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~--~~~l~~l~-~~s 190 (437)
.+|-+| +.+.....+....++..-++..+..++-..+. ..+...|+.++.++++.+.+ .|.....- |+|
T Consensus 119 vdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~-------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s 190 (541)
T COG0833 119 VDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWFPD-------TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFS 190 (541)
T ss_pred cCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC-------CCChHHHHHHHHHHHHHHHHhcccccceehHHHH
Confidence 998888 88888888887777777777777766665432 13456788888777766555 44444333 455
Q ss_pred HHHHHHHHHHHHHHhhhheeccCCCC-cccc---c-cccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCC
Q 013718 191 LAAAVMSLSYSTIAWSASVRKGVQPD-VAYG---Y-KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (437)
Q Consensus 191 ~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~---~-~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~ 265 (437)
.+-++..+.+.++.++. ..|..++ .... + ++....+++.++...+-+..|+|+|.+.+--...|- +||+
T Consensus 191 ~iKV~~ii~Fii~gii~--~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~nP~ 264 (541)
T COG0833 191 SIKVLTIIGFIILGIII--ICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----ENPR 264 (541)
T ss_pred HHHHHHHHHHHHHHHHH--hcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeeccc----CCch
Confidence 55544333322222211 1111121 1111 1 233456778899999999999999999999999998 8998
Q ss_pred CcccchhhhhHHHHHHHHHHHHHhh-hhh-cccc----------cchhhhhhCCCC--chHHHHHHHHHHHHHHHhhcce
Q 013718 266 KGPMWRGVVVAYIVVALCYFPVALI-GYW-MFGN----------KVEDNILLSLEK--PTWLIVMANFFVVVHVIGSYQI 331 (437)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~y~~~g~~-gy~-~fg~----------~~~~~il~~~~~--~~~~~~~~~~~~~i~~~~s~pl 331 (437)
| .++|++.-.+--..++|+..-++ |.+ .|.| ...++....+++ -..+..+.+....++++.+---
T Consensus 265 K-~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS 343 (541)
T COG0833 265 K-SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANS 343 (541)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhc
Confidence 7 78888888777777777654332 222 2322 011222222221 2334556677777777776666
Q ss_pred eccchHHHHHHHHhhhcCC-------Cccchhh-hhhhHHHHHHHHHHHhhcc--chhhhhhhhhcchhhhhHhhhccee
Q 013718 332 YAMPVFDMIETLLVKKLNF-------SPTRLLR-FVVRNLYVASTMFIGITFP--FFGGLLGFFGGFAFAPTTYFVSQIL 401 (437)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~ia~~~p--~~~~i~~~~G~~~~~~l~~ilP~l~ 401 (437)
.++...+.+..+-.++.-. +..+... ++++.+.-+++++-+..-. -++-++++.|-.. .++.+-=++-
T Consensus 344 ~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W~~I~~s 421 (541)
T COG0833 344 GLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG--FIAWGSICLS 421 (541)
T ss_pred cchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 7888888888876654310 1112222 2233333344444443322 2566666666332 3444444555
Q ss_pred ee
Q 013718 402 PL 403 (437)
Q Consensus 402 ~l 403 (437)
|+
T Consensus 422 hi 423 (541)
T COG0833 422 HI 423 (541)
T ss_pred HH
Confidence 65
No 46
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.16 E-value=1.1e-09 Score=111.09 Aligned_cols=359 Identities=12% Similarity=0.059 Sum_probs=215.8
Q ss_pred cccCCCchhhHHHHhhhcccccccchH-HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCc-cccCHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVLSL-PYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGK-RFDRYHELGQH 112 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~L-P~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~-~~~~y~~l~~~ 112 (437)
+.+|+.+.++-.+.-++.++|+|++-. ..+.++.|-..-++..++.+...+.+...+.|...+.|.. . ++...+++
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG--s~~~ya~~ 104 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG--SFYTYAYR 104 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc--cceeeeee
Confidence 567889999999999999999999654 5566666655555557788899999999999988778863 3 78888899
Q ss_pred HhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHH-HHhcCCCCCccchhhhHHHH--HHHHHHhCCCCchhhHHH
Q 013718 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHE-LLCKEPCKEIKLSYFIMIFA--SVHFVLSHLPNFNAIAGV 189 (437)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~--~~i~pl~~~~~l~~l~~~ 189 (437)
..|+-++ +.+.....+.....+.+-+...+.+++.+.. ......-+..+...|..++. ++++.+.-.+-.......
T Consensus 105 ~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~ 183 (554)
T KOG1286|consen 105 FVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFS 183 (554)
T ss_pred eeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeeh
Confidence 9998888 8888888888888888888888888888750 00000001122233333322 222333333332222222
Q ss_pred HHHHHHH---HHHHHHHHhhhheeccCCCCcc--ccc--cccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCC
Q 013718 190 SLAAAVM---SLSYSTIAWSASVRKGVQPDVA--YGY--KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE 262 (437)
Q Consensus 190 s~~~~~~---~~~~~~i~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k 262 (437)
.....++ .++...+++......+...+.. ..+ +....+..+.++..++....|+|.|.+.+-...+|- |
T Consensus 184 ~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~----k 259 (554)
T KOG1286|consen 184 LAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA----K 259 (554)
T ss_pred HHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc----c
Confidence 2222222 2222221111111111100100 001 112334447889999999999999999999999999 8
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHHHhhhhhccc-cc--chh------hhh--hCCCCchHHHHHHHHHHHHHHHhhcce
Q 013718 263 KPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG-NK--VED------NIL--LSLEKPTWLIVMANFFVVVHVIGSYQI 331 (437)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg-~~--~~~------~il--~~~~~~~~~~~~~~~~~~i~~~~s~pl 331 (437)
||+| ..++++..++..+..+|....+.--+.-. ++ ..+ +.. .+.....++..+.++...+.++.+--.
T Consensus 260 NP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~ 338 (554)
T KOG1286|consen 260 NPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNS 338 (554)
T ss_pred CCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHH
Confidence 9986 78999999999999999988765433322 11 111 111 111112222236777777777777777
Q ss_pred eccchHHHHHHHHhhhcCC-----CccchhhhhhhHHHHHHHHHHHhhccc-----hhhhhhhhhcchhhhhHhhhccee
Q 013718 332 YAMPVFDMIETLLVKKLNF-----SPTRLLRFVVRNLYVASTMFIGITFPF-----FGGLLGFFGGFAFAPTTYFVSQIL 401 (437)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ia~~~p~-----~~~i~~~~G~~~~~~l~~ilP~l~ 401 (437)
.+++.-+.+..+-+.+.-. -.++.+.+....+..+...+.++.... |+.++++.|--+ .+++.+=++.
T Consensus 339 ~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~t--l~~w~~i~~~ 416 (554)
T KOG1286|consen 339 SLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGT--LFAWTLVALS 416 (554)
T ss_pred HhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHH--HHHHHHHHHH
Confidence 8888888888885544210 111112223333333444444444332 578888876433 4444444444
Q ss_pred ee
Q 013718 402 PL 403 (437)
Q Consensus 402 ~l 403 (437)
++
T Consensus 417 ~i 418 (554)
T KOG1286|consen 417 HL 418 (554)
T ss_pred He
Confidence 44
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.12 E-value=3.5e-08 Score=100.33 Aligned_cols=252 Identities=10% Similarity=-0.005 Sum_probs=144.6
Q ss_pred ccCCCchhhHHHHhhhcc-cccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHh
Q 013718 36 SSRNAKWWYSAFHNVTAM-VGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (437)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~-iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (437)
.+|+.+.++.+..-++.+ +|+|+.+++..-.+.|....+...++.++........+.|...+.|... ...+-.++.+
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aG--G~Y~~~~~~~ 88 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISG--AIYQWSRRMG 88 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CHHHHHHHHc
Confidence 568899999998888875 8999998887655445444566677788888888888899877777655 7788889999
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhc-CCCCCcc---c--hhhhHHHH-HHHHHHhCCCCchhhH
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCK-EPCKEIK---L--SYFIMIFA-SVHFVLSHLPNFNAIA 187 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~-~~~~~~~---~--~~~~~i~~-~~i~pl~~~~~l~~l~ 187 (437)
||+++ +++.....+.......+........+..+.+.... ...+++. . ..+.+... +++.-+.-.+..|...
T Consensus 89 g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~ 167 (475)
T TIGR03428 89 GEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMS 167 (475)
T ss_pred Ccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 99888 77777766654433333333333333222211110 0000110 0 11111111 1111122223455555
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeccCCCCccccccc---cCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCC
Q 013718 188 GVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKA---KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (437)
Q Consensus 188 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p 264 (437)
+++.+..+..+...++++........... ...+.. ...+.....+..+.....|+|.|.+.+..+.+|+ |||
T Consensus 168 ~i~~~~~~~~i~~l~~iii~~~~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~----knP 242 (475)
T TIGR03428 168 RVNTIGVTCEIVGVLAVIGVLFTHAQRGP-GVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET----KNP 242 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh----cCc
Confidence 55555444322222211111111111110 001100 0111113345667777889999999999999999 899
Q ss_pred CCcccchhhhhHHHHHHHHHHHHHhhhhhccc
Q 013718 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 296 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg 296 (437)
+| +.+|++..+..+..++|..+-+......+
T Consensus 243 ~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 243 RR-VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred ch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 87 78899999999887766665554444333
No 48
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.01 E-value=1.1e-07 Score=96.84 Aligned_cols=253 Identities=13% Similarity=0.050 Sum_probs=134.1
Q ss_pred ccCCCchhhHHHHhhhcccc--cccch-HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHH
Q 013718 36 SSRNAKWWYSAFHNVTAMVG--AGVLS-LPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (437)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG--~GiL~-LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~ 112 (437)
.+|+.+.++.+...++ ++| .|+.. ++.+.++.|-...+...++.+++....+..+.|...+.|+.. +..+-+++
T Consensus 10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G--g~y~~~~~ 86 (482)
T TIGR00907 10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG--GQYFWSAK 86 (482)
T ss_pred eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc--cHHHHHHH
Confidence 5677888888877777 444 56644 344666666544566788888888888999999877777655 78888888
Q ss_pred HhCccccc---hhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHH--HHHhCCCCchhhH
Q 013718 113 AFGEKLGL---YIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH--FVLSHLPNFNAIA 187 (437)
Q Consensus 113 ~~G~~~g~---~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i--~pl~~~~~l~~l~ 187 (437)
.+|+++|+ +++.....+.....+.+.....++++........+......+......+...++ +-+.-....|.+.
T Consensus 87 ~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~ 166 (482)
T TIGR00907 87 LAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLP 166 (482)
T ss_pred hcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhHHH
Confidence 98866553 444444444444444444444555554443221111000001111111211111 1111122344444
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeccCC--CCcccccc----cc-CccchHhHHHHhhhhhhhhcccceeeccccccCCcC
Q 013718 188 GVSLAAAVMSLSYSTIAWSASVRKGVQ--PDVAYGYK----AK-TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPST 260 (437)
Q Consensus 188 ~~s~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~----~~-~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~ 260 (437)
.+..+..+..+...+++....+..... ...+..+. +. ....+...+..++....|+|.|.+.+....+|+
T Consensus 167 ~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~--- 243 (482)
T TIGR00907 167 RITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI--- 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc---
Confidence 444443332222111111111111110 01111111 00 001111245566666789999999999999999
Q ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHHhhhhhccc
Q 013718 261 PEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 296 (437)
Q Consensus 261 ~k~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg 296 (437)
|||+| +++|++..+..+..+++.+..+..+...+
T Consensus 244 -knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 244 -ENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred -CChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 89976 78899998888776655444443333333
No 49
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.84 E-value=1.3e-06 Score=89.46 Aligned_cols=238 Identities=16% Similarity=0.173 Sum_probs=131.9
Q ss_pred ccCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHH-HHHHHHHHHcchhCCC-ccccCHHHHHHHH
Q 013718 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEMVPG-KRFDRYHELGQHA 113 (437)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~~~-~~~~~y~~l~~~~ 113 (437)
.+|+.+.++.....+++++|.+ .+|.+++..|.. +++..++.+++. .-....+.|.....|+ .. ....-.++.
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG--G~Y~w~~~~ 79 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG--GIYSWMNKS 79 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--cHHHHHHHH
Confidence 3678999999999999999976 568888888853 555555555443 3455667887666764 34 788899999
Q ss_pred hCccccchhhHHHHHHHHhHHh----------hhhHhhhccchHHHHHHHhcCCCCCccch-hhhHHHHHH--HHHHhCC
Q 013718 114 FGEKLGLYIVVPQQLIVEVGVC----------IVYMVTGGKSLHKVHELLCKEPCKEIKLS-YFIMIFASV--HFVLSHL 180 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~----------~~y~i~~~~~l~~~~~~~~~~~~~~~~~~-~~~~i~~~~--i~pl~~~ 180 (437)
+|+++| ++............. .++..+ +....+..+.. ..+.. ....+.... ++-..-.
T Consensus 80 ~G~~~g-f~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~t~vn~ 151 (496)
T PRK15238 80 VGPKFA-FIGTFMWFASYIIWMVSTASKIWIPFSTFIF-GKDTTQTWHFL------GLNSTQVVGILAVIWMILVTFVAS 151 (496)
T ss_pred cCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Ccchhhhhhhh------cccchHHHHHHHHHHHHHHHHHHc
Confidence 999988 543322221111111 111111 11111100000 01111 111111111 2223335
Q ss_pred CCchhhHHHHHHHHHHHHH----HHHHHhhhheeccCCC-Cc-c-ccc-cccCcc-chHhHHHHhhhhhhhhcccceeec
Q 013718 181 PNFNAIAGVSLAAAVMSLS----YSTIAWSASVRKGVQP-DV-A-YGY-KAKTAA-GTVFNFFSALGDVAFAYAGHNVVL 251 (437)
Q Consensus 181 ~~l~~l~~~s~~~~~~~~~----~~~i~~~~~~~~~~~~-~~-~-~~~-~~~~~~-~~~~~~~~~~~i~~faf~~~~~i~ 251 (437)
+.++..++++.++....+. .+++........+... +. . .++ +...+. .+..++..++....|+|.|.+.+.
T Consensus 152 ~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 231 (496)
T PRK15238 152 KGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVG 231 (496)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHH
Confidence 6677777777654432211 1111111111111111 00 0 011 000011 112357777888999999999999
Q ss_pred cccccCCcCCCCCCCcccchhhhhHHHHHHHHHHHHHhhh
Q 013718 252 EIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 291 (437)
Q Consensus 252 ~i~~~m~~~~k~p~~~~~~~~~~~~~~~~~~~y~~~g~~g 291 (437)
...+|+ |||+| +.+|++..+...+.++|.+..+..
T Consensus 232 ~~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 232 GLVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 89976 788999999999999998865443
No 50
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.81 E-value=8.2e-07 Score=90.35 Aligned_cols=243 Identities=15% Similarity=0.121 Sum_probs=118.8
Q ss_pred CCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHH-HHHHHHHHcchhCCCccccCHHHHHHHHhCcc
Q 013718 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (437)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 117 (437)
|.+.++-++..+.+++ ++-.+|.+ ++.|.. .++..++.+++.. -......|.....|+.. ...+..++.+|++
T Consensus 2 ~~~~~~l~~~~~~~v~--~~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~~G--G~y~~~~~a~G~~ 75 (474)
T TIGR03813 2 KLTVVTLAIMNITAVV--SLRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPEKG--GVFRWVGEAFGAR 75 (474)
T ss_pred cccHHHHHHHHHHHHH--HhhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CceeeHhhhcChh
Confidence 4566666666655554 44455755 567842 3334444444333 36667777766666544 7888999999999
Q ss_pred ccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhh--HHHHHHH--HHHhCCCCchhhHHHHHHH
Q 013718 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFI--MIFASVH--FVLSHLPNFNAIAGVSLAA 193 (437)
Q Consensus 118 ~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~--~i~~~~i--~pl~~~~~l~~l~~~s~~~ 193 (437)
+| ++......+.......+-+...+..+.-..+... ..+......|. .+..++. +-+.-.+.++....++.+.
T Consensus 76 ~g-f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~ 152 (474)
T TIGR03813 76 WG-FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEAT--VDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWG 152 (474)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--cCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 88 6665554443321111101111111110000000 00011111121 1111111 2223344566555555432
Q ss_pred HHH-HHH--HHHHHh-hhheeccCCCCccccccccCcc-chHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcc
Q 013718 194 AVM-SLS--YSTIAW-SASVRKGVQPDVAYGYKAKTAA-GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (437)
Q Consensus 194 ~~~-~~~--~~~i~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~ 268 (437)
... .++ ..++++ ......+..+..+..+.+..+. .++..+..+. ...|+|.|.+.+....+|+ |||+| +
T Consensus 153 ~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~----knP~r-~ 226 (474)
T TIGR03813 153 GIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDV----DNPDK-N 226 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhc----cCccc-c
Confidence 111 111 111111 1111111111111111111111 1223333333 4578999999999999999 89987 7
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhhccc
Q 013718 269 MWRGVVVAYIVVALCYFPVALIGYWMFG 296 (437)
Q Consensus 269 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg 296 (437)
.+|++..+..++.++|.+..+......+
T Consensus 227 iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 227 YPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8899999999999999886665444443
No 51
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.80 E-value=6.7e-08 Score=82.74 Aligned_cols=211 Identities=17% Similarity=0.241 Sum_probs=133.5
Q ss_pred chhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchh------------CCCcc------
Q 013718 41 KWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM------------VPGKR------ 102 (437)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~------------~~~~~------ 102 (437)
|..-......|-++|+|-|+||.+|+.+||.+++.++.+.+++++.+....+++... ..+.+
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 445566788899999999999999999999999999999999999999988875210 00000
Q ss_pred ------------------------------------ccCHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccch
Q 013718 103 ------------------------------------FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSL 146 (437)
Q Consensus 103 ------------------------------------~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l 146 (437)
+...+|++...|. |.|.-+..++++++.||....|...+-...
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffn-kvgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFN-KVGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 0125677777786 578778889999999999999988887776
Q ss_pred HHHHHHHhc--------CCCCC-----c--------cchhhhHHHHHHH-HHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Q 013718 147 HKVHELLCK--------EPCKE-----I--------KLSYFIMIFASVH-FVLSHLPNFNAIAGVSLAAAVMSLSYSTIA 204 (437)
Q Consensus 147 ~~~~~~~~~--------~~~~~-----~--------~~~~~~~i~~~~i-~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~ 204 (437)
-++.....+ ++|++ | .++.++.|+.+++ +|+.+. +++..+.+.++....--.-....
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g 250 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILG 250 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccch
Confidence 666554321 12221 1 1234455555444 466554 45555565555544222111111
Q ss_pred hhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccC
Q 013718 205 WSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI 257 (437)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m 257 (437)
....-.+. .++..+.+++ ....-++-+.++..+|+|.+|.++|.....+
T Consensus 251 ~~l~tmqa-eedaa~a~p~---arc~cgfgkl~~~aly~~~a~cmapda~gag 299 (319)
T KOG3832|consen 251 ISLATMQA-EEDAAAAHPP---ARCFCGFGKLFGCALYAFMAHCMAPDAIGAG 299 (319)
T ss_pred hhhhhhhh-cccccccCCc---cccccccccccchhhHHHHhhccCCCCCCCC
Confidence 11111111 1111222211 2222344455889999999999999998877
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.79 E-value=1.5e-08 Score=103.20 Aligned_cols=238 Identities=15% Similarity=0.209 Sum_probs=143.8
Q ss_pred hhhccccccc-chHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCccccchhhHHHH
Q 013718 49 NVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQ 127 (437)
Q Consensus 49 l~~~~iG~Gi-L~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~ 127 (437)
.+..++|+|+ +..+.+..+.|....++..++.+++...++..+.|...+.|... ++.+..++.+||..| ..+....
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G--g~y~y~~~~lg~~~G-f~~gw~y 82 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG--GFYAYASRGLGPALG-FAAGWAY 82 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc--chhhhhhhccCCcCC-ceeeHHH
Confidence 4567888888 45566788888767778888999999999999999887777554 899999999999988 7777776
Q ss_pred HHHHhHHhhhhHhhhccchHHHHHHHhcCC-CCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 013718 128 LIVEVGVCIVYMVTGGKSLHKVHELLCKEP-CKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWS 206 (437)
Q Consensus 128 ~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 206 (437)
.+.............+..++.. +...+.+ ...+. ..+..++.+++..+.+. ..+....+...-....++..+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~i~~~~~~~l~~~-gv~~~~~~~~~~~~i~~~~li~~ii 159 (478)
T PF00324_consen 83 WLSYIAAIAAEATAAGSFLQFW-GYFPGLPSTWVWG-ILIAIIFILLITLLNLF-GVRVSGKIEFILTIIKLIALIAFII 159 (478)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-ccccccccccccc-chhhhhhhhhhhhhhhh-hhhccchHHHHHHHHhhhHhhhhhh
Confidence 6665555555555555444333 1111111 00000 01133333333333332 2222222222211111111111111
Q ss_pred hh----eeccCCCCc-c---c-----cccc---cCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccc
Q 013718 207 AS----VRKGVQPDV-A---Y-----GYKA---KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 270 (437)
Q Consensus 207 ~~----~~~~~~~~~-~---~-----~~~~---~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~ 270 (437)
.. ...+...+. . + ..++ .....++.++..++....++|.|.+.+...-+|. |||+| +++
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k-~IP 234 (478)
T PF00324_consen 160 VGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRK-TIP 234 (478)
T ss_pred hcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccC----CCchh-hhh
Confidence 11 111111111 0 0 0100 0112347889999999999999999999999999 89987 788
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcccc
Q 013718 271 RGVVVAYIVVALCYFPVALIGYWMFGN 297 (437)
Q Consensus 271 ~~~~~~~~~~~~~y~~~g~~gy~~fg~ 297 (437)
|++..+.....++|+......-...+.
T Consensus 235 ra~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 235 RATLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred hHhhhhhhhhhhhhhhhhhhcccccCc
Confidence 999999999999999888766666654
No 53
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.74 E-value=9.9e-07 Score=90.25 Aligned_cols=234 Identities=12% Similarity=0.065 Sum_probs=119.7
Q ss_pred cCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHH--HHHHHHHHcchhCC-CccccCHHHHHHHH
Q 013718 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITL--YTLWQMVEMHEMVP-GKRFDRYHELGQHA 113 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~--~t~~~l~~~~~~~~-~~~~~~y~~l~~~~ 113 (437)
+++.+.++.++..+..++ ++-.+| .+++.| .+.+...+.+.+.+ -......|.....+ +.. ...+-+++.
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G--~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G--G~y~wv~~a 75 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSG--FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG--GIFAWVSNT 75 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC--Ceeeehhhc
Confidence 466888888888877775 567888 477778 45555555554443 35667777655443 322 677888999
Q ss_pred hCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCcc-chhhhHHHHH-H--HHHHhCCCCchhhHHH
Q 013718 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIK-LSYFIMIFAS-V--HFVLSHLPNFNAIAGV 189 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~-~--i~pl~~~~~l~~l~~~ 189 (437)
+|+++| ++......+.......+........+...... + ... ...+..+..+ + .+-+...+..+...++
T Consensus 76 ~G~~~G-f~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~----~--~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i 148 (507)
T TIGR00910 76 LGERFG-FAAIFFGWFQIAIGFIPMIYFILGALSYILKF----P--ALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKI 148 (507)
T ss_pred cCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----c--hhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999998 65544444433211111111111111111110 0 011 1111111111 1 1222233445555555
Q ss_pred HHHHHHHHHHH-H--HHH-hhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCC
Q 013718 190 SLAAAVMSLSY-S--TIA-WSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (437)
Q Consensus 190 s~~~~~~~~~~-~--~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~ 265 (437)
+.++.+..... . +++ .......+.....+.+..+..+.....+....+....|+|.|.+.+....+|+ |||+
T Consensus 149 ~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~----knP~ 224 (507)
T TIGR00910 149 AKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINEL----ENPG 224 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHc----cCCc
Confidence 44433211111 1 111 11111222211111111000011111123344555689999999999999999 8998
Q ss_pred CcccchhhhhHHHHHHHHHHHHHh
Q 013718 266 KGPMWRGVVVAYIVVALCYFPVAL 289 (437)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~y~~~g~ 289 (437)
| +.+|++..+..++.++|.+..+
T Consensus 225 r-~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 225 R-DYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHH
Confidence 6 7889999999988888876544
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.59 E-value=1.1e-05 Score=79.92 Aligned_cols=253 Identities=11% Similarity=0.069 Sum_probs=128.9
Q ss_pred cCCCchhhHHHH---hhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHH
Q 013718 37 SRNAKWWYSAFH---NVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (437)
Q Consensus 37 ~~~~s~~~~~~~---l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (437)
+|+-|+++.+.. +.+..-|. .-++.+.....|-..-+-..++.+.+......-|.|.....|... +..==+.+.
T Consensus 47 ~R~fs~~s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsG--gLy~waa~l 123 (550)
T KOG1289|consen 47 KREFSLFSIFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSG--GLYFWAAVL 123 (550)
T ss_pred hhhhhHHHHHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCC--cHHHHHHHh
Confidence 466666554433 33332221 123444444444332233356677777777888888766566322 222222333
Q ss_pred hCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHh-cCCCCCccchhhhHHHHHHHHHHhCCC--CchhhHHHH
Q 013718 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC-KEPCKEIKLSYFIMIFASVHFVLSHLP--NFNAIAGVS 190 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~~i~pl~~~~--~l~~l~~~s 190 (437)
-+||++++..-+.-.....|..........+.-+.++.... .++....++.....++..+.+..+++. .-+.+++++
T Consensus 124 ap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~ 203 (550)
T KOG1289|consen 124 APPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARIN 203 (550)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 36777744433333333333333222222222222222211 122222233333444444444444433 346677777
Q ss_pred HHHHHHHHHHHHHHhhhhee--ccC--CCCccccccc----cCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCC
Q 013718 191 LAAAVMSLSYSTIAWSASVR--KGV--QPDVAYGYKA----KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE 262 (437)
Q Consensus 191 ~~~~~~~~~~~~i~~~~~~~--~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k 262 (437)
.+++...++..++.++.... .+. .+..+..+.+ ..+..+-+.+..++-...+.+.|-.....+.+|. |
T Consensus 204 ~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~----~ 279 (550)
T KOG1289|consen 204 SVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEET----K 279 (550)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHh----c
Confidence 77777555433333222221 111 1111111111 1122244567777888899999999999999999 8
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHHHhhhhhcccc
Q 013718 263 KPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 297 (437)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~ 297 (437)
|++| +.+|++..+..+..++=..+-+.-..+-+|
T Consensus 280 nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 280 NASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred chhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8887 678988888888777666655555556664
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.46 E-value=0.0001 Score=74.24 Aligned_cols=343 Identities=15% Similarity=0.082 Sum_probs=170.5
Q ss_pred cCCCchhhHHHHhhhcccccccchHHHHHHhc--CchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHh
Q 013718 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQL--GWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~--G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (437)
+|+.++++-+..-.+..+....+.+....... ++.-+++..++...+...-..+...... +.+ .++..+.|..|
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~-r~G---l~~~v~sR~~F 86 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGA-KYG---LPFPVLSRASF 86 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-HhC---CCcchhhhhhh
Confidence 34446555555555555544444444433333 3333444444433333222222232222 122 37889999999
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCC---CCCc--cchhhhHHHHHHHHHHhCCCCchhhHHH
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP---CKEI--KLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~---~~~~--~~~~~~~i~~~~i~pl~~~~~l~~l~~~ 189 (437)
|.+ |..+..+...+...|-...-....++.+..++....+.. .++. ....+.+++..+.+++......+..+..
T Consensus 87 G~~-Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~ 165 (442)
T TIGR00800 87 GIY-GSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLF 165 (442)
T ss_pred hhh-HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 965 657888888888888888788888888888877754321 0000 1122334455556665555555554445
Q ss_pred HHHHHHHHHHHHHHHhhhhee-ccCCCCccccccccCccchHhHHHHhhhhhhhhccc-ceeeccccccCCcCCCCCCCc
Q 013718 190 SLAAAVMSLSYSTIAWSASVR-KGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAG-HNVVLEIQATIPSTPEKPSKG 267 (437)
Q Consensus 190 s~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~-~~~i~~i~~~m~~~~k~p~~~ 267 (437)
...+....+....+.+..... .+..+.. ...+....+.....+..++...+-.+.. -.+.+...+.+ |++++.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~----~~~~~~ 240 (442)
T TIGR00800 166 EWLAVVPPFAAFGMLIWALSKAHGKGPLG-ELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFG----KSKKTA 240 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhc----CCccch
Confidence 555544322221111111111 1111100 0100011233455666666665444333 46788999988 554443
Q ss_pred ccchhhhhHHHHHHHHHHHHHhhhhhc----ccccchh--hhhhCCCCchHHHHHHH------HHHHHHHH-hhcceecc
Q 013718 268 PMWRGVVVAYIVVALCYFPVALIGYWM----FGNKVED--NILLSLEKPTWLIVMAN------FFVVVHVI-GSYQIYAM 334 (437)
Q Consensus 268 ~~~~~~~~~~~~~~~~y~~~g~~gy~~----fg~~~~~--~il~~~~~~~~~~~~~~------~~~~i~~~-~s~pl~~~ 334 (437)
. +....++.........+|+.+-.. +|+..-+ .....+.. .+.....+ ++..+..+ ..--.+.+
T Consensus 241 ~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~-~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~y 317 (442)
T TIGR00800 241 I--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLG-LTYAVGARAVFGFGFCFVVAQLSTNISANSY 317 (442)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcc-cchhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3 556677777777777777777665 7754322 33333332 11111111 22222222 24444666
Q ss_pred chHHHHHHHHhhhcCCCccchhhhhhhHHHHHHHHHHH-----hhccchhhhhhhhhcchhhhhHhhhcc
Q 013718 335 PVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIG-----ITFPFFGGLLGFFGGFAFAPTTYFVSQ 399 (437)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia-----~~~p~~~~i~~~~G~~~~~~l~~ilP~ 399 (437)
+....+...+++.. +.+|.. .+..++.++++ -..+.+.+++.+.|.......+..+==
T Consensus 318 s~~l~l~~l~~~~~-----~~~r~~--~i~~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~gI~l~D 380 (442)
T TIGR00800 318 SAGLDIAALLPKYI-----KIKRGS--LICAIIALLICPWNLYNSSSKFTTFLSSIGGFLSPIAGVMIAD 380 (442)
T ss_pred chHHHHHHhCcCcc-----ccchHH--HHHHHHHHHhccHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666664321 112211 11111222222 122356668888888887776666443
No 56
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.36 E-value=9.3e-05 Score=68.89 Aligned_cols=135 Identities=20% Similarity=0.234 Sum_probs=95.0
Q ss_pred hhHHHHhhhcccccccchHH---HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCcccc
Q 013718 43 WYSAFHNVTAMVGAGVLSLP---YAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLG 119 (437)
Q Consensus 43 ~~~~~~l~~~~iG~GiL~LP---~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g 119 (437)
.+-.+..+.+++|+|.-+== .-|.+-|+. |....++++++-..++..+.+...+.+ .++|.|..+..+||+++
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~---a~~y~~~~~~v~~~~~~ 81 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN---ATSYREILKYVSGPKFA 81 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHhhHHHH
Confidence 34556677799999976533 335566765 566667777777777777777765433 33999999999999999
Q ss_pred chhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhh--HHHHHHHHHHhCCCCchhhHHHHHHH
Q 013718 120 LYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFI--MIFASVHFVLSHLPNFNAIAGVSLAA 193 (437)
Q Consensus 120 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~--~i~~~~i~pl~~~~~l~~l~~~s~~~ 193 (437)
.+.|+.+.++.++.++.-+...++.+++..+. ++|. ++...++..+.+.++.+.+-.+..+-
T Consensus 82 -ki~d~~iif~lf~~~vVM~AGags~~~e~~~l-----------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI 145 (349)
T COG3949 82 -KIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL-----------PYWIGALIIILLVLILLFLGRVEGIITVNGII 145 (349)
T ss_pred -HHHHHHHHHHHHHHHHHHhccchhHHHHHhCc-----------cHHHHHHHHHHHHHHHHHHhcccceeeeheeH
Confidence 88899999999999998888888777765432 4444 44455555556666666655444333
No 57
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.17 E-value=0.00056 Score=69.58 Aligned_cols=152 Identities=12% Similarity=0.166 Sum_probs=97.0
Q ss_pred cccCCCchhhHHHHhhhcccccc-cchHHHHHHhcCchhHHHHHHHHHHHHHHHH----HHHHHcchhCCCccccCHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTL----WQMVEMHEMVPGKRFDRYHEL 109 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~----~~l~~~~~~~~~~~~~~y~~l 109 (437)
-..|+.+++...+.+..+.+|++ .++.|....+.|+........ .....+... ..+.+..++. +..|.+|.
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~T~~e~ 112 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI-QVPTGYFVLGVLGKKFAIISRKY---NAITINDV 112 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc---CCccHHHH
Confidence 45688999999999999999885 478888888878631111110 001111111 1122222322 24599999
Q ss_pred HHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHH
Q 013718 110 GQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (437)
Q Consensus 110 ~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~ 189 (437)
-++-||++..+.+..+...+..++...+-+...+..++.+++ ++....+++..+++........++...+.
T Consensus 113 l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g---------i~~~~~iii~~~iv~iYt~~GG~~av~~t 183 (471)
T TIGR02119 113 LKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG---------LSYLTALFIFSSSVLIYTTFGGFRAVALT 183 (471)
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999766557777777777666666656666665555542 33445556666667777888889998888
Q ss_pred HHHHHHHHHH
Q 013718 190 SLAAAVMSLS 199 (437)
Q Consensus 190 s~~~~~~~~~ 199 (437)
..+-.+..+.
T Consensus 184 d~iQ~~v~~~ 193 (471)
T TIGR02119 184 DAIQGIVMFT 193 (471)
T ss_pred HHHHHHHHHH
Confidence 8888765444
No 58
>PRK11375 allantoin permease; Provisional
Probab=98.17 E-value=0.0029 Score=64.40 Aligned_cols=280 Identities=11% Similarity=0.056 Sum_probs=133.3
Q ss_pred cCHHHHHHHHhCccccchhhHHHHH-HHHhHHhhhhHhhhccchHHHHHHHhcC----C----CCCccc--hhhhHHHHH
Q 013718 104 DRYHELGQHAFGEKLGLYIVVPQQL-IVEVGVCIVYMVTGGKSLHKVHELLCKE----P----CKEIKL--SYFIMIFAS 172 (437)
Q Consensus 104 ~~y~~l~~~~~G~~~g~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~~~~~----~----~~~~~~--~~~~~i~~~ 172 (437)
.++.-+.|..||.+ |..+..+... +...|=...-....++.+..++....+. + ...... ....+++.+
T Consensus 89 l~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 167 (484)
T PRK11375 89 VPFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWL 167 (484)
T ss_pred CChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHH
Confidence 38999999999975 5355555542 2333333333345566666555443211 0 001111 122234555
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHhhhheecc-CCCCcccccc-ccCccchHhHHHHhhhhhhhhcc-ccee
Q 013718 173 VHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKG-VQPDVAYGYK-AKTAAGTVFNFFSALGDVAFAYA-GHNV 249 (437)
Q Consensus 173 ~i~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~faf~-~~~~ 249 (437)
+..++.+ ...+.++++..++....++.........+.+. ..+..+.... ..........+..++...+-++. .-.+
T Consensus 168 l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~ 246 (484)
T PRK11375 168 VNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVS 246 (484)
T ss_pred HHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHcc
Confidence 6666665 45666666666665544332222222222221 1111100000 00111223445555544444555 3457
Q ss_pred eccccccCCcCCCCCCCcccchhhhhHHHHHHHHHHHHHhhh----hhcccccc--hhhhhhCCCCchHHHHHHHHHHHH
Q 013718 250 VLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG----YWMFGNKV--EDNILLSLEKPTWLIVMANFFVVV 323 (437)
Q Consensus 250 i~~i~~~m~~~~k~p~~~~~~~~~~~~~~~~~~~y~~~g~~g----y~~fg~~~--~~~il~~~~~~~~~~~~~~~~~~i 323 (437)
.|.+.+.. |++++.. +...+++.+...+...+|+.. ...+|+.. +.+++.++.+ .....++-+...+
T Consensus 247 ~~D~tRy~----k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~-~~~~~~a~l~~v~ 319 (484)
T PRK11375 247 ASDFTQNA----HSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS-LFASFFAVLVILM 319 (484)
T ss_pred ccchhccc----CChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc-hHHHHHHHHHHHH
Confidence 88888887 5554322 444556666655554444432 34555433 3344554432 3334444444555
Q ss_pred HHHhh-cceeccchHHHHHHHHhhhcCCCccchhhhhhhHHHHHHHHHHHhh--ccc---hhhhhhhhhcchhhhhHhhh
Q 013718 324 HVIGS-YQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGIT--FPF---FGGLLGFFGGFAFAPTTYFV 397 (437)
Q Consensus 324 ~~~~s-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~--~p~---~~~i~~~~G~~~~~~l~~il 397 (437)
+...+ ...+.++.-..+..++.+..+ + +|... +.-++..+++-. +.+ |..++++.|++.+......+
T Consensus 320 a~~~tN~~~N~ys~~~~l~~l~pk~i~----~-~~~~~--i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi 392 (484)
T PRK11375 320 TTISTNATGNIIPAGYQIAALAPTKLT----Y-KNGVL--IASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMM 392 (484)
T ss_pred HHHHHHHHhhcccHHHHHHHhCcCccc----h-hhHHH--HHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 335777877777777754321 1 11111 111122222221 223 78888888888876666654
Q ss_pred cc
Q 013718 398 SQ 399 (437)
Q Consensus 398 P~ 399 (437)
==
T Consensus 393 ~D 394 (484)
T PRK11375 393 AH 394 (484)
T ss_pred hh
Confidence 33
No 59
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.07 E-value=0.0025 Score=62.93 Aligned_cols=282 Identities=13% Similarity=0.059 Sum_probs=146.0
Q ss_pred CHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCch
Q 013718 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFN 184 (437)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~ 184 (437)
++..++|..||.+ |..+..+...+...|=-..-....++.++.+.+...+. .+...+..+..++..+.+. ...+
T Consensus 59 ~~~v~sR~~FG~~-Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~----~~~~~~~~i~~~l~~~~~~-~G~~ 132 (386)
T TIGR02358 59 SAMGSLKLSLGSK-GSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE----ESPMLWILIVGILVTLWLL-SGPL 132 (386)
T ss_pred CHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CchHHHHHHHHHHHHHHHH-HHHH
Confidence 7999999999975 65777777777777766666677888888887654321 1123344455555555554 3466
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhh-cccceeeccccccCCcCCCC
Q 013718 185 AIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFA-YAGHNVVLEIQATIPSTPEK 263 (437)
Q Consensus 185 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fa-f~~~~~i~~i~~~m~~~~k~ 263 (437)
.++++..++............+....+...+ ...++ +.+ ..+..++....-. -......+.+.+.. |+
T Consensus 133 ~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~---~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~----k~ 201 (386)
T TIGR02358 133 AFVWLNNWSVWLLLIATLWLLVVVFSKADLS---ELWNR---AGD-MSFAVAVELVIAMPLSWLPLIADYTRFA----RN 201 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchh---hhcCC---CCC-ccHHHHHHHHHHHHHHHHHHccchhhhc----CC
Confidence 6777777766644443322222222221111 11111 111 2233333222211 12223467777776 44
Q ss_pred CCCcccchhhhhHHHHHHHHHHHHHhhhhhcccccchhhhhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHHH
Q 013718 264 PSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETL 343 (437)
Q Consensus 264 p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~ 343 (437)
|+ +.......+..+...+...+|.....+.++....+++.... .....-+...++...+-..+.++....+...
T Consensus 202 ~~--~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g----~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l 275 (386)
T TIGR02358 202 PR--HVFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGAG----LGIPALLIILLSTVTTTFMDIYSAAISTGNL 275 (386)
T ss_pred Cc--ceehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcc----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 43 33466777888888888888887777766643333333321 1122333344444444455666666666666
Q ss_pred HhhhcCCCccchhhhhhhHHHHHHHHHHHhh--ccchhhhhhhhhcchhhhhHhhhcceeeeccCC-cccchhhhhh
Q 013718 344 LVKKLNFSPTRLLRFVVRNLYVASTMFIGIT--FPFFGGLLGFFGGFAFAPTTYFVSQILPLQSSK-TFSFLSFFFF 417 (437)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~--~p~~~~i~~~~G~~~~~~l~~ilP~l~~l~~~~-~~~~~w~~~~ 417 (437)
+++- + ++++... ..++.++++.. ..++..++++.|..........+==.+..||++ ++..+|..+.
T Consensus 276 ~~~~---~--~~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI~i~Dy~l~rr~~~~~g~N~~a~~ 344 (386)
T TIGR02358 276 LPRL---K--VKHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPLYAVVFVDFFVVKRRRLSGYLNFQALV 344 (386)
T ss_pred HHhh---c--chHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeecccccCCCcHHHHH
Confidence 6322 1 1122111 12222222222 355778888877777655555533322224333 4445565443
No 60
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.05 E-value=0.0023 Score=65.33 Aligned_cols=153 Identities=11% Similarity=0.113 Sum_probs=92.9
Q ss_pred cccCCCchhhHHHHhhhccccc-ccchHHHHHHhcCchhHHHHH--HHHHH-HHHHHHHHHHHcchhCCCccccCHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGA-GVLSLPYAMAQLGWGPGVAIL--ILSWI-ITLYTLWQMVEMHEMVPGKRFDRYHELG 110 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~~f~~~G~~~g~i~l--~~~~~-~~~~t~~~l~~~~~~~~~~~~~~y~~l~ 110 (437)
...|+.+++...+.+..+.+|+ ..++.|....+.|+....... ...+. ...+-...+.+..++. +..|.+|+.
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---~~~T~~e~l 114 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY---NAVTLNDML 114 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccHHHHH
Confidence 4567888888888888887776 668888777777864111111 01111 1111222233333322 245999999
Q ss_pred HHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHH
Q 013718 111 QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVS 190 (437)
Q Consensus 111 ~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s 190 (437)
++-||++..+.+..+...+..++...+-+...+..++.+++ ++....+++..+++........++...+..
T Consensus 115 ~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g---------i~~~~~iii~~~iv~iYt~~GGl~av~~TD 185 (483)
T PRK09442 115 RARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG---------ISYETGLLIFGITVALYTAFGGFRAVVLTD 185 (483)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999765545655555555555555555555665555442 333445566666777788888899988888
Q ss_pred HHHHHHHHH
Q 013718 191 LAAAVMSLS 199 (437)
Q Consensus 191 ~~~~~~~~~ 199 (437)
.+-.+..+.
T Consensus 186 ~iQ~~i~~~ 194 (483)
T PRK09442 186 ALQGIVMLV 194 (483)
T ss_pred HHHHHHHHH
Confidence 887765444
No 61
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.95 E-value=0.003 Score=64.46 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=97.9
Q ss_pred cccCCCchhhHHHHhhhcccc-cccchHHHHHHhcCchhHHHHHH---HHHHHHHHHHHHHHHcchhCCCccccCHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVG-AGVLSLPYAMAQLGWGPGVAILI---LSWIITLYTLWQMVEMHEMVPGKRFDRYHELG 110 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG-~GiL~LP~~f~~~G~~~g~i~l~---~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~ 110 (437)
...|+.+.+-..+....+.++ .-.+++|....+.|+....+... ...+.-.+-...+.+..+ +.+..|.+|.-
T Consensus 35 ~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~---~~~~~T~~d~l 111 (493)
T COG0591 35 LGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK---ARGATTIPDFL 111 (493)
T ss_pred ccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCccHHHHH
Confidence 455667777777777777777 78899999999999764444433 222222233333444332 22356999999
Q ss_pred HHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHH
Q 013718 111 QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVS 190 (437)
Q Consensus 111 ~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s 190 (437)
++=||++.-+.+..+...+....-+..-+...++.++.... .+...-..+.+.++..-...-.++...+..
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g---------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td 182 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG---------ISYVTGILIGALIVALYTFLGGLRAVVWTD 182 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---------CCHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 99999545558888888888888887777777776644433 223333445556666666666777777776
Q ss_pred HHHHHHH
Q 013718 191 LAAAVMS 197 (437)
Q Consensus 191 ~~~~~~~ 197 (437)
.+--...
T Consensus 183 ~iqg~im 189 (493)
T COG0591 183 FIQGLIM 189 (493)
T ss_pred HHHHHHH
Confidence 6665533
No 62
>PRK12488 acetate permease; Provisional
Probab=97.92 E-value=0.0054 Score=63.54 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=93.9
Q ss_pred cccCCCchhhHHHHhhhcccccc-cchHHHHHHhcCchhHHHHHHHHHHHHHH-HHHHHHHcchhCCCccccCHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLY-TLWQMVEMHEMVPGKRFDRYHELGQH 112 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~f~~~G~~~g~i~l~~~~~~~~~-t~~~l~~~~~~~~~~~~~~y~~l~~~ 112 (437)
-..|+.+++...+.+..+.+|++ .++.|...+..|+. +... .....+.+. ....+.+-.++. +..|.+|.-++
T Consensus 64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~-~~g~~~g~~~~~~~~a~~lr~~---g~~T~~d~l~~ 138 (549)
T PRK12488 64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLY-ALGVLAGWPIILFLIAERLRNL---GKYTFADVVSY 138 (549)
T ss_pred eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHH-HHHHHHHHHHHHHHHHHHHHHC---CCcchHHHHHH
Confidence 45678899999999999988775 58899888888864 3221 111111111 122233322222 24599999998
Q ss_pred HhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHH
Q 013718 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (437)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~ 192 (437)
=||.+.-+.+..+...+........-+...+..++.+++ ++....+++..+++.......-++...+...+
T Consensus 139 Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g---------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T PRK12488 139 RLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG---------ISYLYAVVIVGALMVLYVTFGGMLATTWVQII 209 (549)
T ss_pred HcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 888554446666666555555555555555555544431 33344456666777777778889998888888
Q ss_pred HHHHHHH
Q 013718 193 AAVMSLS 199 (437)
Q Consensus 193 ~~~~~~~ 199 (437)
-.+..+.
T Consensus 210 Q~~im~~ 216 (549)
T PRK12488 210 KAVLLLS 216 (549)
T ss_pred HHHHHHH
Confidence 8765444
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.85 E-value=0.0033 Score=62.67 Aligned_cols=150 Identities=14% Similarity=0.180 Sum_probs=96.1
Q ss_pred cCCCchhhHHHHhhhccccc-ccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhC
Q 013718 37 SRNAKWWYSAFHNVTAMVGA-GVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (437)
.|+.+++...+.+..+.+|+ ..++.|....+.|+. +....+..........++..+..++ . +..|.+|..++-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN-N--GAYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-c--CCCchhHHHHHHhC
Confidence 46778888888888887776 568889888887853 2222222222222334444443332 2 24599999999999
Q ss_pred ccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 013718 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (437)
Q Consensus 116 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~ 195 (437)
++..+.+..+...+..+.....-+...+..++.+++ ++....+++.++++........++...+...+-.+
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g---------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~ 148 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG---------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAV 148 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 765656666666666777777777777776666542 23344455556666667777888888888888766
Q ss_pred HHHH
Q 013718 196 MSLS 199 (437)
Q Consensus 196 ~~~~ 199 (437)
..+.
T Consensus 149 i~~~ 152 (407)
T TIGR00813 149 IMIL 152 (407)
T ss_pred HHHH
Confidence 5443
No 64
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.80 E-value=0.015 Score=60.20 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=89.6
Q ss_pred cccCCCchhhHHHHhhhccccc-ccchHHHHHHhcCchhHHHHHHHHHHHHH-HHHHHHHHcchhCCCccccCHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGA-GVLSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHEMVPGKRFDRYHELGQH 112 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~~f~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~~~~y~~l~~~ 112 (437)
...|+.+++...+.+..+.+++ ..++.|....+.|+- +....+ ...+.+ ....++.+-.++. + ..|.+|..++
T Consensus 64 laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lrr~-g--~~T~~d~l~~ 138 (549)
T TIGR02711 64 TAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLRNL-G--RYTFADVASY 138 (549)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHHHc-C--CccHHHHHHH
Confidence 3567788888787888877765 679999888888864 322221 111111 2223333333322 2 4599999998
Q ss_pred HhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHH
Q 013718 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (437)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~ 192 (437)
=||.|.-+.+..+...+........-+...+..++.+++ ++...-+++..+++..-....-++...+...+
T Consensus 139 Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g---------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T TIGR02711 139 RLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG---------LNYHVAVVLVGILMVMYVLFGGMLATTWVQII 209 (549)
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 888654445555555554444444444445554444432 23344456666777777777888888888888
Q ss_pred HHHHHHH
Q 013718 193 AAVMSLS 199 (437)
Q Consensus 193 ~~~~~~~ 199 (437)
-.+..+.
T Consensus 210 Q~~im~~ 216 (549)
T TIGR02711 210 KAVLLLF 216 (549)
T ss_pred HHHHHHH
Confidence 7665443
No 65
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.59 E-value=0.0015 Score=62.20 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=102.9
Q ss_pred CCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcc-hhCCCccccCHHHHHHHHhCcc
Q 013718 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMH-EMVPGKRFDRYHELGQHAFGEK 117 (437)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~y~~l~~~~~G~~ 117 (437)
..+.+-.+-+=..++-|+|..-=|..-++-||.++.+..++.+++.---.....-.. -|+++ + |.+|++++..|++
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G-~--Si~~i~~~~lG~~ 127 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKG-K--SIGEIAGKYLGKR 127 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCC-c--cHHHHHHHHHHHH
Confidence 355677888888899999999999999999999999998877776655555444433 23433 4 9999999999976
Q ss_pred ccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q 013718 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMS 197 (437)
Q Consensus 118 ~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~ 197 (437)
.+ .+..+...+.+.....++....++.+...-. .....+..+...+++-....|+--++...+.++++..
T Consensus 128 ~~-~lf~~f~~~~lilV~avF~~v~a~~~~~~p~---------~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll 197 (376)
T PF02554_consen 128 AK-KLFLIFIFFLLILVIAVFADVVANTFVNSPW---------AATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVLL 197 (376)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHhccChh---------HHHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHHH
Confidence 44 8888888888777777777776665543211 1224445555555666666555555677777776644
Q ss_pred H
Q 013718 198 L 198 (437)
Q Consensus 198 ~ 198 (437)
+
T Consensus 198 ~ 198 (376)
T PF02554_consen 198 L 198 (376)
T ss_pred H
Confidence 3
No 66
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.52 E-value=0.023 Score=58.04 Aligned_cols=154 Identities=13% Similarity=0.086 Sum_probs=84.2
Q ss_pred cccCCCchhhHHHHhhhcccccc-cchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCC--CccccCHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP--GKRFDRYHELGQ 111 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~--~~~~~~y~~l~~ 111 (437)
-..|+.+++-..+.+..+.+++. .++.|....+.|+.. ....+...+........+.+-.++.. +.+..|.+|.-+
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 45678888888888888877754 577887777778742 21111111112222333333222111 223558999999
Q ss_pred HHhCccccchh---hHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHH
Q 013718 112 HAFGEKLGLYI---VVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (437)
Q Consensus 112 ~~~G~~~g~~~---~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~ 188 (437)
.=||++.+ .+ ..+...+........-+...+..++.+++ ++....+++..+++..-.....++...+
T Consensus 112 ~Ryg~~~~-~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g---------i~~~~~iii~~~i~~~Yt~~GGl~av~~ 181 (487)
T TIGR02121 112 NRFNDKSR-LLRIISALIILVFFTIYTSSGLVAGGKLFESTFG---------LDYKTGLLIGALIIVIYTFFGGFLAVSW 181 (487)
T ss_pred HHhCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99996432 22 22222222222222233334444444332 2334445566667777777778888888
Q ss_pred HHHHHHHHHHH
Q 013718 189 VSLAAAVMSLS 199 (437)
Q Consensus 189 ~s~~~~~~~~~ 199 (437)
...+-.+..+.
T Consensus 182 TD~iQ~~i~~~ 192 (487)
T TIGR02121 182 TDFVQGLLMFF 192 (487)
T ss_pred HHHHHHHHHHH
Confidence 88877664443
No 67
>PRK09395 actP acetate permease; Provisional
Probab=97.51 E-value=0.081 Score=54.95 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=89.4
Q ss_pred cccCCCchhhHHHHhhhccccc-ccchHHHHHHhcCchhHHHHHHHHHHHH-HHHHHHHHHcchhCCCccccCHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGA-GVLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~~~~~~~~y~~l~~~ 112 (437)
...|+.+++...+.+..+.+|+ ..++.|......|+. +.... +...+. ......+.+-.+ +.+..|++|..+.
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~-~~~~~-~~~~~g~~~~~~~~~~~~r---~~g~~T~~d~l~~ 140 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYD-GLIYS-IGFLVGWPIILFLIAERLR---NLGKYTFADVASY 140 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHH-HHHHH-HHHHHHHHHHHHHHHHHHh---hCCCccHHHHHHH
Confidence 4567888888888888888876 568999888888874 22211 111111 111222333222 2224699999999
Q ss_pred HhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHH
Q 013718 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (437)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~ 192 (437)
=||++.-+.+..+...+.......+-+...+..++.++ .++....+++..+++..-...--++...+...+
T Consensus 141 Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~---------gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~i 211 (551)
T PRK09395 141 RLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF---------GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQII 211 (551)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99865343555555444444434334444444444443 233444556666777777788888888888887
Q ss_pred HHHHHHH
Q 013718 193 AAVMSLS 199 (437)
Q Consensus 193 ~~~~~~~ 199 (437)
-.+..+.
T Consensus 212 Q~iim~~ 218 (551)
T PRK09395 212 KAVLLLS 218 (551)
T ss_pred HHHHHHH
Confidence 7664433
No 68
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.019 Score=56.89 Aligned_cols=262 Identities=14% Similarity=0.162 Sum_probs=145.8
Q ss_pred CHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCC--CC
Q 013718 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL--PN 182 (437)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~--~~ 182 (437)
+-..+++..||.+ |.++..+.+.+.+.|-...-.+..++...+ .+..+...++++.++++...+.. |-
T Consensus 82 pqmi~sR~~fG~~-Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~---------~~~~~~~~~ili~g~l~~l~~ifG~r~ 151 (442)
T COG1457 82 PQMILSRYPFGVK-GSILPSLLNGITLIGWFGVNVILSGIAIGS---------GTGLPVWAGILIIGVLMTLVTIFGYRA 151 (442)
T ss_pred Chheeecccccch-hHHHHHHHHHHHHhhHHHHHHHHhcccccc---------CCCCcHHHHHHHHHHHHHHHHHHhHHH
Confidence 3446788999965 559999999999999888888888876111 12234456666666666555554 34
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccc-eeeccccccCCcCC
Q 013718 183 FNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGH-NVVLEIQATIPSTP 261 (437)
Q Consensus 183 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~-~~i~~i~~~m~~~~ 261 (437)
++.+.+.+.......+.+.. +..+......+... ...+.++.++..+++...-.+... +-.....+-+
T Consensus 152 l~~l~~~a~~~~~~lf~~l~---~~~~~~~~~~~~~~----~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~---- 220 (442)
T COG1457 152 LHKLERIAVPLLLLLFLYLL---ALLFRSKGGLDALW----VKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYA---- 220 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhcccccceee----ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc----
Confidence 44455444444443333222 22222111111111 112455667766666666555554 4456677776
Q ss_pred CCCCCcccchhhhhHHHHHHHHHHHHHhhhhhcccccc-hhhhhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHH
Q 013718 262 EKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-EDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMI 340 (437)
Q Consensus 262 k~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~ 340 (437)
|+|+.++.-.....+......+-...|...-.+-|+.. ..+....+.. +...+.+...+....+--..+++..-.+
T Consensus 221 ~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~ 297 (442)
T COG1457 221 PSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSF 297 (442)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33332233344556667777777888888888888765 3344444432 4555666666666666555666665555
Q ss_pred HHHHhhhcCCCccchhhhhhhHHHHHHHHHHHhh----ccchhhhhhhhhcchhhhhHhhh
Q 013718 341 ETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGIT----FPFFGGLLGFFGGFAFAPTTYFV 397 (437)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~----~p~~~~i~~~~G~~~~~~l~~il 397 (437)
.+...+- ++..+.+...+. ..+++|.. ..+++.++.++|..........+
T Consensus 298 ~~i~~~l-----~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~i 351 (442)
T COG1457 298 ANIIPKL-----SKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMI 351 (442)
T ss_pred HHhhhhh-----hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555432 112222222211 34444444 45688888888876665555443
No 69
>PRK11017 codB cytosine permease; Provisional
Probab=97.47 E-value=0.069 Score=53.14 Aligned_cols=174 Identities=16% Similarity=0.092 Sum_probs=82.4
Q ss_pred cCHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCc
Q 013718 104 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 183 (437)
Q Consensus 104 ~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l 183 (437)
.++..++|..||.+ |..+..+...+...|=...-....++.++...+ .+...+.+++.++..+..... .
T Consensus 71 ~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~---------~~~~~~~~i~~~l~~~~~~~G-~ 139 (404)
T PRK11017 71 LSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG---------LDINLLIVLSGLLMTVTAYFG-I 139 (404)
T ss_pred cCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHHH-H
Confidence 38999999999975 546665555554443333222333333333221 122335556666666655543 3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhccc-ceeeccccccCCcCCC
Q 013718 184 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAG-HNVVLEIQATIPSTPE 262 (437)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~-~~~i~~i~~~m~~~~k 262 (437)
+.++++..++........+...+....+....+.....+ +.+...+..++...+-.+.. -.+.+...+.. |
T Consensus 140 ~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~----k 211 (404)
T PRK11017 140 SALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIV----PAEPLDFSAALTLVVGSFISGGTLTADFVRFG----R 211 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCC----CCCcccHHHHHHHHHHHHHHhHhcCCChHhhc----c
Confidence 444444444444322222211122222110000000111 11123455555544443333 46677877776 4
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHHHhhhhhccccc
Q 013718 263 KPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK 298 (437)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~ 298 (437)
+++ +.......++.+...+-..+|...-...|+.
T Consensus 212 ~~~--~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~ 245 (404)
T PRK11017 212 SAK--IAVLATMVAFFLGNSLMFIFGAAGAAVYGQA 245 (404)
T ss_pred Ccc--ceeehhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 433 2224455666666666777776666666653
No 70
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.46 E-value=0.057 Score=55.43 Aligned_cols=154 Identities=11% Similarity=0.069 Sum_probs=85.0
Q ss_pred cccCCCchhhHHHHhhhccccccc-chHHHHHHhcCchhHHHHHHHHHHHH-HHHHHHHHH-cchh-CCCccccCHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVE-MHEM-VPGKRFDRYHELG 110 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~-~~~~-~~~~~~~~y~~l~ 110 (437)
...|+.+++-..+.+..+.+++.. ++.|....+.|+.. . ...+...+. .....++.. .... +.+.+..|.+|.-
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l 114 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYF 114 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHH
Confidence 456889999999988888887754 78998888888642 1 111111111 111122211 1100 1112245899999
Q ss_pred HHHhCcccc--chhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHH
Q 013718 111 QHAFGEKLG--LYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (437)
Q Consensus 111 ~~~~G~~~g--~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~ 188 (437)
++=||++.. +.+..+...+.....+.+-+...+..++.++ .++....+++..+++..-...--++...+
T Consensus 115 ~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~---------gi~~~~~iii~~~iv~iYt~~GGl~aV~~ 185 (502)
T PRK15419 115 TGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF---------GMSYETALWAGAAATILYTFIGGFLAVSW 185 (502)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999996422 1222222222222222222233344433332 23344555666777788888888988888
Q ss_pred HHHHHHHHHHH
Q 013718 189 VSLAAAVMSLS 199 (437)
Q Consensus 189 ~s~~~~~~~~~ 199 (437)
...+-.+..+.
T Consensus 186 TD~iQ~~imi~ 196 (502)
T PRK15419 186 TDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHH
Confidence 88888765443
No 71
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.43 E-value=0.16 Score=50.66 Aligned_cols=282 Identities=12% Similarity=0.067 Sum_probs=136.9
Q ss_pred ccCHHHHHHHHhCcccc--chhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcC---C---C--CCccchhhh--HHH
Q 013718 103 FDRYHELGQHAFGEKLG--LYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE---P---C--KEIKLSYFI--MIF 170 (437)
Q Consensus 103 ~~~y~~l~~~~~G~~~g--~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~---~---~--~~~~~~~~~--~i~ 170 (437)
..+|+.+++..||-+.. ..+.+..+.+.-||..+ -..+..++-++....+. + . ...+...++ +++
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~if 178 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIF 178 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHH
Confidence 35899999999984322 26777778888888776 33444555555554321 0 1 111112221 222
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHhhhheeccCC--CCccccccccCccchHhHHHHhhhhhhhhccc-c
Q 013718 171 ASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQ--PDVAYGYKAKTAAGTVFNFFSALGDVAFAYAG-H 247 (437)
Q Consensus 171 ~~~i~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~-~ 247 (437)
-++.++.. .+.++.++++-.++-....+.+.-.++....+... ...+........+..++.+...+...+-.|.- .
T Consensus 179 W~l~~l~~-~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~ 257 (497)
T COG1953 179 WVLQLLVL-FKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLA 257 (497)
T ss_pred HHHHHHHH-hcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 33333333 45567777666666554444333333333333221 11111101112223333444444333333332 5
Q ss_pred eeeccccccCCcCCCCCCCcccchhhhhHHHHHHHHHHHHHh----hhhhccccc--chhhhhhCCCCchHHHHHHHHHH
Q 013718 248 NVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVAL----IGYWMFGNK--VEDNILLSLEKPTWLIVMANFFV 321 (437)
Q Consensus 248 ~~i~~i~~~m~~~~k~p~~~~~~~~~~~~~~~~~~~y~~~g~----~gy~~fg~~--~~~~il~~~~~~~~~~~~~~~~~ 321 (437)
-|+|...+.- |+|+... ..-.+++.+...+.-++|+ .++..||+. .+.+++.++++......++.+.+
T Consensus 258 lN~~DFsRfa----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~ 331 (497)
T COG1953 258 LNIPDFTRFA----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTF 331 (497)
T ss_pred cCCchhhccc----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHH
Confidence 6788888876 5554333 3334556666656655554 568889997 55588888875433331333333
Q ss_pred HH-HHHhhcceeccchHHHHHHHHhhhcCCCccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhh
Q 013718 322 VV-HVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYF 396 (437)
Q Consensus 322 ~i-~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~i 396 (437)
++ ++.+...-+..+...-+..++++..+.+ |-..+.....+.+.++-+=..-.+|...++..|++.+.....+
T Consensus 332 ~iati~~Ni~aN~vsp~~D~s~l~Pk~in~k--rg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVm 405 (497)
T COG1953 332 AVATISTNIAANIVSPGYDLSALFPKYINIK--RGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVM 405 (497)
T ss_pred HHHHHhhhHHhccCChHHHHHHhcccccchh--hhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHH
Confidence 33 3333444455565555666665543211 1111111122222233222222346666666666666555554
No 72
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.37 E-value=0.095 Score=54.46 Aligned_cols=151 Identities=11% Similarity=0.078 Sum_probs=93.4
Q ss_pred cccCCCchhhHHHHhhhccccc-ccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGA-GVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (437)
...|+.+++...+.+..+.+++ ..++.|....+.|+. +................++.+-.++. +..|.+|.-++=
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~---~~~T~~e~l~~R 104 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKF---GKYTVPDFIGDR 104 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHC---CCccHHHHHHHH
Confidence 4568899999999999888866 568899887777863 22111111111112233444443322 245999999999
Q ss_pred hCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHH
Q 013718 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~ 193 (437)
||+|..+.+..+...+........-+...+..++.+++ ++....+++..+++..-...--++...+.-.+-
T Consensus 105 f~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g---------i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ 175 (552)
T TIGR03648 105 YYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE---------VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQ 175 (552)
T ss_pred hCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 98765557666666655555555555555555554432 333444556666677777777888888888877
Q ss_pred HHHHH
Q 013718 194 AVMSL 198 (437)
Q Consensus 194 ~~~~~ 198 (437)
.+..+
T Consensus 176 ~iim~ 180 (552)
T TIGR03648 176 YIVLI 180 (552)
T ss_pred HHHHH
Confidence 65443
No 73
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.35 E-value=0.0029 Score=63.13 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=81.8
Q ss_pred cCCCchhhHHHHhhhccccc-ccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhC
Q 013718 37 SRNAKWWYSAFHNVTAMVGA-GVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (437)
.|+.+++...+.+..+.+|+ .+++.|....+.|+.. ....+..+.........+.+-.++. +..|.+|.-++-||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~---~~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRS---GAVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHT---T--SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhccc---chhhhhhhhhhhcC
Confidence 57788899999999988887 5688998888888753 3232333333333334444433322 24599999999999
Q ss_pred ccc-cchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 013718 116 EKL-GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (437)
Q Consensus 116 ~~~-g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~ 194 (437)
++. .+.+..+...+.........+...+..++.+++ ++....+++..++++.....--++...+...+-.
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g---------i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~ 151 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG---------IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQG 151 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHTTCTT------SHHHHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhccc---------hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHH
Confidence 765 234444444444445555555555555544432 3345555666666677777777777777777666
Q ss_pred HHHHH
Q 013718 195 VMSLS 199 (437)
Q Consensus 195 ~~~~~ 199 (437)
+..++
T Consensus 152 ~i~~~ 156 (406)
T PF00474_consen 152 VIMII 156 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 64433
No 74
>PRK10484 putative transporter; Provisional
Probab=97.24 E-value=0.038 Score=57.01 Aligned_cols=157 Identities=11% Similarity=0.014 Sum_probs=79.0
Q ss_pred cccCCCchhhHHHHhhhcccccc-cchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (437)
-..|+.+++-..+.+..+.++++ .++.|....+.|+... ......+.........+..-.++ .+..|.+|.-++-
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~-~~~~~~~~~~~~~~~~~~p~~~r---~~~~T~~e~l~~R 110 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVM-AWEVTAAIALIILALIFLPRYLK---SGITTIPDFLEER 110 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHh
Confidence 45688899988888888877764 5788888777786421 11111111111122223322222 2355999999999
Q ss_pred hCccccchhhHHHHHHHHhHH-hhhhHhhhccchHHHHHHHhcCCCCCccch--hhh--HHHHHHHHHHhCCCCchhhHH
Q 013718 114 FGEKLGLYIVVPQQLIVEVGV-CIVYMVTGGKSLHKVHELLCKEPCKEIKLS--YFI--MIFASVHFVLSHLPNFNAIAG 188 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~-~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~--~~~--~i~~~~i~pl~~~~~l~~l~~ 188 (437)
||++.. .+......+..... ....+...+..+++++.... ...++.. .+. ++.++++..-....-++...+
T Consensus 111 yg~~~~-~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~---~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~ 186 (523)
T PRK10484 111 YDKTTR-RIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSE---LLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAV 186 (523)
T ss_pred cCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh---hcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 998755 33333322222221 22122222222333221100 0012212 111 122344455666677888888
Q ss_pred HHHHHHHHHHH
Q 013718 189 VSLAAAVMSLS 199 (437)
Q Consensus 189 ~s~~~~~~~~~ 199 (437)
...+-.+..+.
T Consensus 187 TD~iQ~vim~i 197 (523)
T PRK10484 187 SDTINGIGLLI 197 (523)
T ss_pred HHHHHHHHHHH
Confidence 88887664443
No 75
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.045 Score=54.03 Aligned_cols=353 Identities=16% Similarity=0.127 Sum_probs=161.2
Q ss_pred CCchhhHHHHhhhcccccccchHHHHH-HhcCchhHHHHHHHHHHHHHHHHHH-HHHcchhCCCccccCHHHHHHHHhCc
Q 013718 39 NAKWWYSAFHNVTAMVGAGVLSLPYAM-AQLGWGPGVAILILSWIITLYTLWQ-MVEMHEMVPGKRFDRYHELGQHAFGE 116 (437)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~LP~~f-~~~G~~~g~i~l~~~~~~~~~t~~~-l~~~~~~~~~~~~~~y~~l~~~~~G~ 116 (437)
..+.....+.....-+|.|-.+--... ++-|+-..++.+ ...+..+-... -.|... ..|+ +..|..++-+++
T Consensus 16 ~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vil--ls~l~~~~~Q~~~arLgi-vTG~---~laq~ir~~y~~ 89 (416)
T COG1914 16 LLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVIL--LSNLMAYILQELSARLGI-VTGK---GLAEAIRERYLP 89 (416)
T ss_pred HHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HhCC---cHHHHHHHHccc
Confidence 345555666666667777665544333 244443222222 11111111111 111111 2332 788999999999
Q ss_pred cccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q 013718 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVM 196 (437)
Q Consensus 117 ~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~ 196 (437)
+++ ++..+...+....+.++..+..+--++-++. .+...-.+++++..+.....+..+.+-.+...-.+.
T Consensus 90 ~~~-~~~~~~~~i~~~at~iae~~G~aial~ll~~---------ip~~~g~iItav~~~iil~~~~~r~~E~~v~~l~~~ 159 (416)
T COG1914 90 GLG-ILLWILAEIAGIATDIAEVAGIAIALNLLFG---------IPLIIGAVITAVDVLIILLLKGYRLLERVVLILGLV 159 (416)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 888 8877878787777777777777766655542 122333445555544444444455544443333222
Q ss_pred HHHHHHHHhhhheeccCCCCcccc----ccccCcc-chHhHHHHhhhhhhhh---cccceeeccccccCCcCCCCCCC-c
Q 013718 197 SLSYSTIAWSASVRKGVQPDVAYG----YKAKTAA-GTVFNFFSALGDVAFA---YAGHNVVLEIQATIPSTPEKPSK-G 267 (437)
Q Consensus 197 ~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~i~~fa---f~~~~~i~~i~~~m~~~~k~p~~-~ 267 (437)
.++..... ....+ + +.... +-+..+. ..+.-...-+|-.+-- |.....+-+ +.. +++++ +
T Consensus 160 ~~i~~~~~--~~~~~--p-~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~--~~~----~~~~~~~ 228 (416)
T COG1914 160 LVILFVYV--AFVAP--P-PWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQD--AGI----KGEENLR 228 (416)
T ss_pred HHHHHHHH--HhhcC--C-CHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceecc--ccc----cchhHHH
Confidence 22211111 11111 1 11111 1111101 1111222223332222 222222222 111 11111 1
Q ss_pred ccchh---hhhHHHHHHHHHHHHHhhhhhcccccch-h---h---hhhCCCC--chHHHHHHHHHHHHHHHhhcceeccc
Q 013718 268 PMWRG---VVVAYIVVALCYFPVALIGYWMFGNKVE-D---N---ILLSLEK--PTWLIVMANFFVVVHVIGSYQIYAMP 335 (437)
Q Consensus 268 ~~~~~---~~~~~~~~~~~y~~~g~~gy~~fg~~~~-~---~---il~~~~~--~~~~~~~~~~~~~i~~~~s~pl~~~~ 335 (437)
.+++. ..+++....++...+-......|..+.+ + + .-.-..+ .+....+--+.+..+-..+.....+.
T Consensus 229 ~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a 308 (416)
T COG1914 229 ALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYA 308 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhh
Confidence 12222 2344555555554444444444432221 1 1 1111110 11111111222222222222222222
Q ss_pred hHHHHHHHHhhhcCCCccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeee--ccC---Cccc
Q 013718 336 VFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPL--QSS---KTFS 410 (437)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l--~~~---~~~~ 410 (437)
-...++...+.+ .+.+.+|...|....+++.++.+...+...++.+.+.+.+..+-+..++++++ +|+ +.+.
T Consensus 309 ~~~~~~g~~~~~---~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~ 385 (416)
T COG1914 309 GQIVMEGFLNWR---IPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKN 385 (416)
T ss_pred hHHHHHhhhccc---CchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccc
Confidence 222333333221 24567788888877877777777766999999999988888888887777777 333 4566
Q ss_pred chhhhhhhhHH
Q 013718 411 FLSFFFFGTVQ 421 (437)
Q Consensus 411 ~~w~~~~g~~~ 421 (437)
++|..+++...
T Consensus 386 ~~~~~~~~~~v 396 (416)
T COG1914 386 PRWLTVLGWIV 396 (416)
T ss_pred hHHHHHHHHHH
Confidence 77776655433
No 76
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.07 E-value=0.091 Score=51.48 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=39.9
Q ss_pred HHhhhcccccccchHHHHHH-hcC--chhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCcccc
Q 013718 47 FHNVTAMVGAGVLSLPYAMA-QLG--WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLG 119 (437)
Q Consensus 47 ~~l~~~~iG~GiL~LP~~f~-~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g 119 (437)
+.+....+|+|.|-.|-... ++| |..+.+.+++.++..-....+ .-.+.+. +|.++.++. ||+.+
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~gG---~~~~l~~~~-g~~f~ 69 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVGG---GYDSLSARI-GKVFG 69 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecCC---CHHHHHHHh-ChHHH
Confidence 34667789999999996644 444 455566566655554433333 2212222 788888877 67777
No 77
>PRK15015 carbon starvation protein A; Provisional
Probab=96.74 E-value=0.014 Score=59.57 Aligned_cols=103 Identities=24% Similarity=0.221 Sum_probs=71.5
Q ss_pred chhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCccccc
Q 013718 41 KWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGL 120 (437)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~ 120 (437)
+.+-.+-+=..++-|+|.+-=|..-++-||.++.+..++..++.---.....-....+++.| |.+|++++..|++.+
T Consensus 84 ~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~Gr--Sig~ia~~~iG~~~~- 160 (701)
T PRK15015 84 DKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGR--SLGELVKEEMGPTAG- 160 (701)
T ss_pred CccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCc--cHHHHHHHHhhHHHH-
Confidence 33556667778899999999999999999999999988877665544444444322223334 999999999998655
Q ss_pred hhhHHHHHHHHhHHhhhhHhhhccch
Q 013718 121 YIVVPQQLIVEVGVCIVYMVTGGKSL 146 (437)
Q Consensus 121 ~~~~~~~~~~~~g~~~~y~i~~~~~l 146 (437)
.+..+..++.......++..++.+.+
T Consensus 161 ~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 161 VIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555544444433
No 78
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.72 E-value=0.025 Score=55.94 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=80.2
Q ss_pred CCCchhhHHHHhhhcccccc-cchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCcc-ccCH-----HHHH
Q 013718 38 RNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKR-FDRY-----HELG 110 (437)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~G-iL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~-~~~y-----~~l~ 110 (437)
++.|.+|+.+..+.+.+|+| +++.|.+.+..| ..++..+.+.+++..-+.+.-.-...++.+++ +.+| ..+-
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 56899999999999999998 999999966555 77766666666555444333332222221111 1136 7888
Q ss_pred HHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhh-HHHHHHHHHHhCCCCchhhHHH
Q 013718 111 QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFI-MIFASVHFVLSHLPNFNAIAGV 189 (437)
Q Consensus 111 ~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~i~pl~~~~~l~~l~~~ 189 (437)
+...||+.+ .+..+. .+..++.. -.+..+.+.+..+... +.+.|. .+...++.-......++.+..+
T Consensus 124 ~gl~~k~lg-~lfa~~-~i~~f~~~---~~~Q~nsi~~~~~~~~-------~~~~~v~~i~l~~l~~~vi~GGik~Ia~v 191 (425)
T TIGR00835 124 KGLGMRWLA-VLFAVF-LIASFGIG---NMVQANAIASALSNAF-------NVPKLVTGIVLTVLTALIIFGGLKRIAKI 191 (425)
T ss_pred HHhCccHHH-HHHHHH-HHHHHhhh---HHHHHHHHHHHHHHHc-------CCcHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 888776655 443433 22222222 1222233333333111 112232 3333333344455677777777
Q ss_pred HHHHHHHH
Q 013718 190 SLAAAVMS 197 (437)
Q Consensus 190 s~~~~~~~ 197 (437)
+..-+...
T Consensus 192 ~~~lvP~m 199 (425)
T TIGR00835 192 SSVVVPFM 199 (425)
T ss_pred HHHHHHHH
Confidence 76666643
No 79
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.65 E-value=0.09 Score=53.88 Aligned_cols=221 Identities=15% Similarity=0.139 Sum_probs=112.4
Q ss_pred chHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcch--hCCCccccCHHHHHHHHhCccccchhhHHHHHHHHhHHhh
Q 013718 59 LSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE--MVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCI 136 (437)
Q Consensus 59 L~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~--~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~ 136 (437)
|=+++...++|+...++.+++...+...|..-+...+. ...|.. -|..+.+- +||..| --+....++.+..-|.
T Consensus 88 LR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGG--aYymISRs-LGpEfG-GSIGllFf~anV~~~a 163 (945)
T KOG1288|consen 88 LRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGG--AYYMISRS-LGPEFG-GSIGLLFFVANVFNCA 163 (945)
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCc--eEEEEEcc-cCcccC-CeeeehhhHHHHhcch
Confidence 45667777888877777777766666666555544322 123333 45555443 455555 3333444444444444
Q ss_pred hhHhhhccchHHHHHHHhc---C-------CCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 013718 137 VYMVTGGKSLHKVHELLCK---E-------PCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWS 206 (437)
Q Consensus 137 ~y~i~~~~~l~~~~~~~~~---~-------~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 206 (437)
.++..+ .+.++.++.. + +...|-+..+..+...+++.+|++.+ ...+..|.+-++......+.+.+
T Consensus 164 m~isG~---vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGs-alfAkas~i~f~~is~s~~si~i 239 (945)
T KOG1288|consen 164 MNISGF---VEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGS-ALFAKASNILFVVISVSLFSIPI 239 (945)
T ss_pred hhhhhh---hHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhH-HHHHhhhhhhhhHHHHHHhhhhh
Confidence 444443 4445555431 1 12222223333333344445555432 22333343333321111111112
Q ss_pred hheeccCCC-----Cccccc-c------------------------ccCccchHhHHHHhhhhhhhhcccceeecccccc
Q 013718 207 ASVRKGVQP-----DVAYGY-K------------------------AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQAT 256 (437)
Q Consensus 207 ~~~~~~~~~-----~~~~~~-~------------------------~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~ 256 (437)
.++..+... ..++.. + ......+..++-..|+++.-+-.|...=-+.-.|
T Consensus 240 S~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgE 319 (945)
T KOG1288|consen 240 SFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGE 319 (945)
T ss_pred eeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCcc
Confidence 222222111 111100 0 0001122345677788877777777666677788
Q ss_pred CCcCCCCCCCcccchhhhhHHHHHHHHHHHHHhhhh
Q 013718 257 IPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY 292 (437)
Q Consensus 257 m~~~~k~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy 292 (437)
+ |+|+| .+++....+...+.++|+++.++--
T Consensus 320 L----k~PSk-SIP~GTl~ava~Tf~~Yvl~~flm~ 350 (945)
T KOG1288|consen 320 L----KAPSK-SIPKGTLSAVAFTFFVYVLVIFLMG 350 (945)
T ss_pred c----cCccc-cCCccchHHHHHHHHHHHHHHHHhc
Confidence 8 99998 7889999999999999998876543
No 80
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.60 E-value=0.0096 Score=60.05 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=111.9
Q ss_pred ccCCCchhhHHHHhhhcccccccchHHHHHHhcC--chhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHH
Q 013718 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLG--WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (437)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (437)
++|+.+.++.+..-.+..+....+.+-......| +.-+++..++..++...-..+...... +.+. ++..++|..
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~-r~Gl---~~~v~sR~~ 80 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP-RTGL---PTMVLSRAS 80 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH-CC------HHHHTTTT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc-ccCC---Cchhcchhc
Confidence 3455666777766666666655555554443333 344444444444443333333333222 2233 788999999
Q ss_pred hCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCC------CCCccchhhh--HHHHHHHHHHhCCCCchh
Q 013718 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP------CKEIKLSYFI--MIFASVHFVLSHLPNFNA 185 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~------~~~~~~~~~~--~i~~~~i~pl~~~~~l~~ 185 (437)
||. .|..+..+...+...|-...-....++.+..+++...+.. ........++ +++.++..+... ...+.
T Consensus 81 FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~g~~~ 158 (440)
T PF02133_consen 81 FGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAI-YGMKA 158 (440)
T ss_dssp S-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHC-THHHH
T ss_pred cCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHh-cCHHH
Confidence 996 5768888888888877777777888888888777542100 0000111121 222233333333 34566
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhccc-ceeeccccccCCcCCCCC
Q 013718 186 IAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAG-HNVVLEIQATIPSTPEKP 264 (437)
Q Consensus 186 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~-~~~i~~i~~~m~~~~k~p 264 (437)
++.+..+.........+........+... +...+.+.. +.....+..++...+-.+.. -.+.+...+.+ |++
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~----~~~ 231 (440)
T PF02133_consen 159 LRRLAVIAAPILLVVFIGMLIWALSKAGG-GPLLSAPAS--PSPSGSFLAAIALVIGSWISWAPNASDYSRYA----KSD 231 (440)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCT--HHHCCS--S------S-HHHHHHHHHCCCHHHHCCCHHHHTTC------H
T ss_pred HHhHHhhhhHHHHhhhhheeEEEeecCCc-chhhhCccc--chhHHHHHHHHHHHHhhhhhhhhccccHHhhC----CCC
Confidence 66665555443322221122221221111 111111000 11111344444443333332 34566788887 433
Q ss_pred CCcccchhhhhHHHHHHHHHHHHHhhhhhc
Q 013718 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWM 294 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~ 294 (437)
++ -.+....+..........+++.+...
T Consensus 232 ~~--~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 232 TS--AWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 33 23666677766666666666665443
No 81
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.0052 Score=61.67 Aligned_cols=228 Identities=18% Similarity=0.218 Sum_probs=126.8
Q ss_pred CchhhHH-----HHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhC--CCccccCHHHHHHH
Q 013718 40 AKWWYSA-----FHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMV--PGKRFDRYHELGQH 112 (437)
Q Consensus 40 ~s~~~~~-----~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~--~~~~~~~y~~l~~~ 112 (437)
-+||+.+ .|+.+.|+ .|=+++...|+|+..+++++..+..++..|..--....++. .+.. .|. +..+
T Consensus 30 fg~~~gv~~~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg--~yf-lis~ 103 (643)
T KOG2083|consen 30 FGWWDGVFVRCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG--VYF-LISR 103 (643)
T ss_pred EeeeehhhhhhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc--EEE-EEEe
Confidence 3555544 44444443 57889999999999999988777777666655444433321 1111 233 3344
Q ss_pred HhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHH
Q 013718 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (437)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~ 192 (437)
.+|+..| --..+...+.+--.+..|.+..++.+..++....... .. . ...+..++..-++. ...+|.+-+
T Consensus 104 slg~efg-gsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~~---i~-g-i~~vt~~ill~i~~----ag~~w~~k~ 173 (643)
T KOG2083|consen 104 SLGPEFG-GSIGIIYAFANAVATAMYVVGFAESVAHLFETESKEM---ID-G-IGSVTVLILLAINV----AGVEWEAKL 173 (643)
T ss_pred ccccccc-chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHHH---hc-c-hhHHHHHHHHHhhh----ccchhHHHH
Confidence 5577666 6666777777777777899999999888887643110 01 1 11122222222333 233344444
Q ss_pred HHHHHHHHHHHH---hhhheeccC--CCC-ccc--cccccCccchH---hHHHHhhhhhhhhcccceeeccccccCCcCC
Q 013718 193 AAVMSLSYSTIA---WSASVRKGV--QPD-VAY--GYKAKTAAGTV---FNFFSALGDVAFAYAGHNVVLEIQATIPSTP 261 (437)
Q Consensus 193 ~~~~~~~~~~i~---~~~~~~~~~--~~~-~~~--~~~~~~~~~~~---~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~ 261 (437)
-+++.++.++.+ +...+.... ..+ ..+ +.-..+...++ ..+|.-|+++.=+..|.-.=.++..++
T Consensus 174 q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL---- 249 (643)
T KOG2083|consen 174 QIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDL---- 249 (643)
T ss_pred HHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCC----
Confidence 433222211111 111111100 000 000 00001111112 367777888888888877777888888
Q ss_pred CCCCCcccchhhhhHHHHHHHHHHHHH
Q 013718 262 EKPSKGPMWRGVVVAYIVVALCYFPVA 288 (437)
Q Consensus 262 k~p~~~~~~~~~~~~~~~~~~~y~~~g 288 (437)
|+|++ .+++....+..+.+.+|..+.
T Consensus 250 ~~Pq~-~IP~GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 250 KDPQK-AIPLGALLAIGVSTLLYLIFI 275 (643)
T ss_pred CCchh-hcccchhhhhhhhhhhhhhhh
Confidence 88987 677899999999999996553
No 82
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.32 E-value=1.3 Score=43.96 Aligned_cols=218 Identities=15% Similarity=0.118 Sum_probs=117.0
Q ss_pred cccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcc-hhCCCccccCHHHHHHHHhCccccchhhHHHHHHHHhHH
Q 013718 56 AGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMH-EMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGV 134 (437)
Q Consensus 56 ~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~ 134 (437)
+..|.++....-.|+ .|.+-. +++..-|....+.-+. .|+-+ +.++.|....=++.+.-+++..+..++..+.-
T Consensus 60 ASflGiag~I~~~GY-dG~~Y~--iG~~~Gy~i~~fL~A~~LRk~G--kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~Y 134 (529)
T COG4147 60 ASFLGIAGLIFISGY-DGLIYS--IGWTGGYPILLFLIAEYLRKLG--KYTFADFIADRYKSNPARLLAAIGTIIVSFLY 134 (529)
T ss_pred HhhhchhHhhhhccc-chHHHH--HHHHHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 456667766666664 243332 2233333322222221 12222 45899987777766555566666655555555
Q ss_pred hhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH-HHHHHhhhheeccC
Q 013718 135 CIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLS-YSTIAWSASVRKGV 213 (437)
Q Consensus 135 ~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~~~~~-~~~i~~~~~~~~~~ 213 (437)
.++-++-.+..+..+++ .+...-+++..+++..-.....++..+|..++--+..+. +.+..+......+.
T Consensus 135 liaQmvGaG~li~~l~g---------v~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g 205 (529)
T COG4147 135 LIAQMVGAGLLISLLLG---------VPYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGG 205 (529)
T ss_pred HHHHHHhhHHHHHHHhC---------CCceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555555555544443 233445566777777888888999999999887764332 22211111111111
Q ss_pred CCCc----------ccc----ccccCccchHhHHHHhhhhhhhhccc-ceeeccccccCCcCCCCCCCcccchhhhhHHH
Q 013718 214 QPDV----------AYG----YKAKTAAGTVFNFFSALGDVAFAYAG-HNVVLEIQATIPSTPEKPSKGPMWRGVVVAYI 278 (437)
Q Consensus 214 ~~~~----------~~~----~~~~~~~~~~~~~~~~~~i~~faf~~-~~~i~~i~~~m~~~~k~p~~~~~~~~~~~~~~ 278 (437)
++.. ..+ .++.....++.+++.-.-..++...+ .+.+...+.- |+-|..|+++.++..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTv-------p~~k~AR~Sv~wA~~ 278 (529)
T COG4147 206 NPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTV-------PDAKEARKSVFWATG 278 (529)
T ss_pred CcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEec-------CcHHHHHHHHHHHHH
Confidence 1110 000 01111234455555555555555555 3344444443 333345599999999
Q ss_pred HHHHHHHHHHhhhhhc
Q 013718 279 VVALCYFPVALIGYWM 294 (437)
Q Consensus 279 ~~~~~y~~~g~~gy~~ 294 (437)
+...+|+..-+.|+.+
T Consensus 279 fIg~fYi~~~~ig~~A 294 (529)
T COG4147 279 FIGIFYILTPIIGAGA 294 (529)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999887766544
No 83
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.08 E-value=0.047 Score=54.67 Aligned_cols=102 Identities=21% Similarity=0.240 Sum_probs=73.8
Q ss_pred CchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcc-hhCCCccccCHHHHHHHHhCccc
Q 013718 40 AKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMH-EMVPGKRFDRYHELGQHAFGEKL 118 (437)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~y~~l~~~~~G~~~ 118 (437)
.+.+-.+-+=..++-|+|.+-=|.--+|-||.+|.+..++.+++.---...+.-.. .|+.+ + |.+|++++.+|++.
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G-~--Si~~ia~~~lG~~a 128 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGG-K--SIGEIAGKYLGRTA 128 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCC-c--cHHHHHHHHhhhhH
Confidence 45567777778889999999999999999999999998887777655555554432 33443 3 99999999999877
Q ss_pred cchhhHHHHHHHHhHHhhhhHhhhccc
Q 013718 119 GLYIVVPQQLIVEVGVCIVYMVTGGKS 145 (437)
Q Consensus 119 g~~~~~~~~~~~~~g~~~~y~i~~~~~ 145 (437)
| .+..+...+.......++.......
T Consensus 129 ~-~~~~~~~l~iliiv~Avfa~vv~~~ 154 (575)
T COG1966 129 K-VFFLLLALILLILVGAVFAAVIAKL 154 (575)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 7666666555555554444444443
No 84
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=95.97 E-value=0.7 Score=45.92 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=44.7
Q ss_pred CchhhHHHHhhhcccccccchHHHHHH---hcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCc
Q 013718 40 AKWWYSAFHNVTAMVGAGVLSLPYAMA---QLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (437)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~LP~~f~---~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 116 (437)
......-+.+.....|+|=|-.|-... ..-|+.+.+..++.++.--.-..+-. . ..+. +++++++++ ||
T Consensus 3 k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~--~--~~~~---~~~~l~~~v-~~ 74 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAV--A--KSGG---GIEDLASRV-GP 74 (427)
T ss_pred chhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--h--hcCC---CHHHHhccc-Cc
Confidence 344667788899999999999996654 23466677766666554322221111 1 1121 788888887 55
Q ss_pred ccc
Q 013718 117 KLG 119 (437)
Q Consensus 117 ~~g 119 (437)
+.+
T Consensus 75 ~f~ 77 (427)
T PF05525_consen 75 KFA 77 (427)
T ss_pred HHH
Confidence 556
No 85
>PRK00701 manganese transport protein MntH; Reviewed
Probab=95.93 E-value=1.5 Score=44.05 Aligned_cols=40 Identities=3% Similarity=0.042 Sum_probs=25.4
Q ss_pred CHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccc
Q 013718 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKS 145 (437)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~ 145 (437)
+..|+.++-+|+++. ++..+...+.+.+...+-..-.+.-
T Consensus 95 ~l~~~ir~~~~~~~~-~~~~~~~~l~~~~~~~~e~~G~a~a 134 (439)
T PRK00701 95 DLAQACRDRYPRPVV-WFLWIQAELAIMATDLAEVIGAAIA 134 (439)
T ss_pred CHHHHHHHHCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999997666 5555555555555555544444433
No 86
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=95.63 E-value=1.3 Score=43.90 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=38.7
Q ss_pred ccCCCchhhHHHHhhhccccccc-chHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 013718 36 SSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITLYT 87 (437)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~f~~~G~~~g~i~l~~~~~~~~~t 87 (437)
++++.|.+|+++.-+...+|+|- .+...|... |-..++..+.+.+++..-+
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~a~~Gmat 66 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWISALLGMAT 66 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHHHHHHHHH
Confidence 45679999999999999999985 566667765 5566777777777766543
No 87
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.59 E-value=0.97 Score=44.19 Aligned_cols=81 Identities=10% Similarity=0.154 Sum_probs=49.3
Q ss_pred CHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhC--CCC
Q 013718 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH--LPN 182 (437)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~--~~~ 182 (437)
+..|..++.+|+++. +...+...+.+.....+-+...+.-++.+. ..+...+.++..+..+-+.+ .++
T Consensus 43 ~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al~ll~---------g~~~~~~~~~~~~~~~~ll~~~~~~ 112 (358)
T PF01566_consen 43 GLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIALNLLF---------GIPLWIWVLLVAVIAILLLWLSSGG 112 (358)
T ss_pred ChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------CCCcHHHHHHHHHHHHHHHHHHhcc
Confidence 788998999998777 666666666666666665555555444332 13345556555555544444 566
Q ss_pred chhhHHHHHHHHH
Q 013718 183 FNAIAGVSLAAAV 195 (437)
Q Consensus 183 l~~l~~~s~~~~~ 195 (437)
.+.+..+...-+.
T Consensus 113 y~~~E~~~~~lv~ 125 (358)
T PF01566_consen 113 YRRLERILKVLVA 125 (358)
T ss_pred chHHHHHHHHHHH
Confidence 6666655554443
No 88
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=93.82 E-value=6.2 Score=39.43 Aligned_cols=302 Identities=14% Similarity=0.118 Sum_probs=145.7
Q ss_pred ccccccccc-ccCCCchhhHHHHhhhcccccccchHHHHHHhcCc--hhHHHHHHHHHHHHHHHHHHHHHcchhCCCcc-
Q 013718 27 AIDDWLPIT-SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGW--GPGVAILILSWIITLYTLWQMVEMHEMVPGKR- 102 (437)
Q Consensus 27 ~~~~~~~~~-~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~--~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~- 102 (437)
.+++-.|.+ .+|.=|+++-...=....++++.--+..+.-+.|+ .-+++...+.-.+ +...++ ...++|..
T Consensus 42 ~N~DL~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~---~~~f~~--lns~~G~~y 116 (572)
T KOG2466|consen 42 TNPDLKPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLF---TAIFLV--LNSRPGSDY 116 (572)
T ss_pred cCCCCCcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHH---HHHHHH--HccCCCccc
Confidence 333444443 34566888888877777777777777777777775 3344443332221 222222 22234432
Q ss_pred ccCHHHHHHHHhCc---cccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcC----C----CCCccchhh--hHH
Q 013718 103 FDRYHELGQHAFGE---KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE----P----CKEIKLSYF--IMI 169 (437)
Q Consensus 103 ~~~y~~l~~~~~G~---~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~----~----~~~~~~~~~--~~i 169 (437)
+.+++-..+..||- -|+ .+.++.+.+..||... =+.++.++.+++...+. + ........+ ..+
T Consensus 117 hIsFpv~sR~sFGiygS~~p-Ii~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfI 192 (572)
T KOG2466|consen 117 HISFPVLSRSSFGIYGSLWP-IINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFI 192 (572)
T ss_pred ccceeeeeeeehhhhHhHHH-HHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHH
Confidence 45777777877773 234 6677777777777664 44566666666554321 1 111222333 356
Q ss_pred HHHHHHHHhCCC--CchhhHHHHHHHHHHHHHHHHHHhhhheeccCCCCcccccc-ccCccchHhHHHHhhhhhhhhcc-
Q 013718 170 FASVHFVLSHLP--NFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYK-AKTAAGTVFNFFSALGDVAFAYA- 245 (437)
Q Consensus 170 ~~~~i~pl~~~~--~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~faf~- 245 (437)
+-++-+|+.++| .++.+-..+.+......+.+. +..+.+.+..+.....+ ........+.+..++.-.+-.|.
T Consensus 193 Fwv~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~L---Iw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fst 269 (572)
T KOG2466|consen 193 FWVASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFL---IWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFST 269 (572)
T ss_pred HHHHhhheeeccHHHhhhHHHHHHhhhHHHHHHHH---HHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccch
Confidence 667778888876 455554444444443322222 22222222211111101 11111111233333332222222
Q ss_pred cceeeccccccCCcCCCCCCCcccchhhhhHHHHHHHHHHH----HHhhhhhcccccch--hhhhhCCCCc------hHH
Q 013718 246 GHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFP----VALIGYWMFGNKVE--DNILLSLEKP------TWL 313 (437)
Q Consensus 246 ~~~~i~~i~~~m~~~~k~p~~~~~~~~~~~~~~~~~~~y~~----~g~~gy~~fg~~~~--~~il~~~~~~------~~~ 313 (437)
...|.|...+-- |+|.... ..-.++..+...+..+ .+..++..||.+.= -+++.++-+. +..
T Consensus 270 l~~N~pDFsRF~----ksp~a~~--~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAg 343 (572)
T KOG2466|consen 270 LIVNAPDFSRFA----KSPNAIW--WGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAG 343 (572)
T ss_pred hhccCchhHhhc----CCCCccc--hhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchh
Confidence 346677777765 6776433 2223333333334444 44567888998543 3555554221 222
Q ss_pred HHHHHHHHHHHHHh-hcceeccchHHHHHHHHhh
Q 013718 314 IVMANFFVVVHVIG-SYQIYAMPVFDMIETLLVK 346 (437)
Q Consensus 314 ~~~~~~~~~i~~~~-s~pl~~~~~~~~~~~~~~~ 346 (437)
..++.+.++++.+. ...-+..+.-+-+..++++
T Consensus 344 vFfi~~~f~laql~~NISan~vaagnDl~~L~Pk 377 (572)
T KOG2466|consen 344 VFFIGFGFALAQLGTNISANSVAAGNDLSALLPK 377 (572)
T ss_pred hhHHHHHHHHHHHhcchhccccccchhhHhhCcc
Confidence 33344444444332 3333444445555555543
No 89
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.35 E-value=0.55 Score=46.66 Aligned_cols=77 Identities=16% Similarity=0.351 Sum_probs=60.4
Q ss_pred CHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCch
Q 013718 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFN 184 (437)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~ 184 (437)
-..++++..+|+ .|+.+..+.+.+.|+-++++-....+|++++..+. .+++.|++++.++-+.++.. .++
T Consensus 262 lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k--------isY~~~v~i~~i~S~~ian~-Gl~ 331 (427)
T PF05525_consen 262 LLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFPK--------ISYKVWVIIFTIFSFIIANL-GLD 331 (427)
T ss_pred HHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cChHHHHHHHHHHHHHHHHh-CHH
Confidence 577889999996 68899999999999999999999999999998763 46788888777776666654 344
Q ss_pred hhHHHHH
Q 013718 185 AIAGVSL 191 (437)
Q Consensus 185 ~l~~~s~ 191 (437)
.+-..+.
T Consensus 332 ~Ii~~s~ 338 (427)
T PF05525_consen 332 QIIKISV 338 (427)
T ss_pred HHHHHHH
Confidence 4444333
No 90
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=93.27 E-value=0.51 Score=46.33 Aligned_cols=80 Identities=16% Similarity=0.351 Sum_probs=58.7
Q ss_pred ccCHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCC
Q 013718 103 FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN 182 (437)
Q Consensus 103 ~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~ 182 (437)
..-..++++..||+ .|+.+..+.+.+.|++++++.....+|.++++.+. .+++.|+++..++.+-++.. .
T Consensus 254 ~~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k--------~~y~~~v~~~~l~s~~ia~~-G 323 (378)
T TIGR00796 254 AQILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK--------LSYKTWVIVFTLFSFIVANL-G 323 (378)
T ss_pred HHHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHHh-C
Confidence 33678899999996 67799999999999999999999999988877432 45666776666665555543 4
Q ss_pred chhhHHHHHH
Q 013718 183 FNAIAGVSLA 192 (437)
Q Consensus 183 l~~l~~~s~~ 192 (437)
++.+-.++..
T Consensus 324 l~~Ii~~~~P 333 (378)
T TIGR00796 324 LTQIISISIP 333 (378)
T ss_pred HHHHHHHHHH
Confidence 5554444333
No 91
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=92.05 E-value=2.7 Score=44.04 Aligned_cols=149 Identities=15% Similarity=0.245 Sum_probs=88.1
Q ss_pred hhhcccccc-cchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcch--hCCCccccCHHHHHHHHhCccccchhhHH
Q 013718 49 NVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE--MVPGKRFDRYHELGQHAFGEKLGLYIVVP 125 (437)
Q Consensus 49 l~~~~iG~G-iL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~--~~~~~~~~~y~~l~~~~~G~~~g~~~~~~ 125 (437)
-+-.+.|.= .+=|-+....+|..-+.++..++++.+..|+.-+...+. -.+... +|.-+.+. +||..| -.+.+
T Consensus 124 clQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG--sYfmISRs-LGPEFG-gAVGl 199 (1075)
T KOG2082|consen 124 CLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG--SYFMISRS-LGPEFG-GAVGL 199 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--eeEEEecc-cCcccc-ceeee
Confidence 333444432 355678888889999999999999999988888776543 134444 77766654 477677 66666
Q ss_pred HHHHHHhHHhhhhHhhhccchHH-HHHHHh--c-----CC-CC-CccchhhhHHHHHHHHHHhC--CCCchhhHHHHHHH
Q 013718 126 QQLIVEVGVCIVYMVTGGKSLHK-VHELLC--K-----EP-CK-EIKLSYFIMIFASVHFVLSH--LPNFNAIAGVSLAA 193 (437)
Q Consensus 126 ~~~~~~~g~~~~y~i~~~~~l~~-~~~~~~--~-----~~-~~-~~~~~~~~~i~~~~i~pl~~--~~~l~~l~~~s~~~ 193 (437)
+..+-.--+...|++..-+++-. +.|... + ++ .. .-+-+++-.++.++.....+ +|-++.++.++..+
T Consensus 200 cFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~C 279 (1075)
T KOG2082|consen 200 CFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLAC 279 (1075)
T ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 66655555555677666665533 333221 1 00 00 11334455555544433333 45677777777777
Q ss_pred HHHHHHHH
Q 013718 194 AVMSLSYS 201 (437)
Q Consensus 194 ~~~~~~~~ 201 (437)
++++++.+
T Consensus 280 VILSIlai 287 (1075)
T KOG2082|consen 280 VILSILAI 287 (1075)
T ss_pred HHHHHHHH
Confidence 77655433
No 92
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=91.05 E-value=7.7 Score=38.77 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=43.6
Q ss_pred chhhHHHHhhhcccccccchHHHHHH-hcC--chhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCcc
Q 013718 41 KWWYSAFHNVTAMVGAGVLSLPYAMA-QLG--WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (437)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~LP~~f~-~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 117 (437)
..+..-+.+..-..|+|=|=.|-... ++| |..+.+..++.++.- =++.-..-...+ + +++|+++++ ||+
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~Vgl----PlLgiiava~~~-g--~~~~l~~rv-~~~ 80 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGL----PVLTVVALAKVG-G--GVDSLSTPI-GKV 80 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHH----HHHHHHHHhhcC-C--CHHHHhhhc-chH
Confidence 45778889999999999999997654 333 555666555544432 222111111122 1 788998887 555
Q ss_pred cc
Q 013718 118 LG 119 (437)
Q Consensus 118 ~g 119 (437)
.+
T Consensus 81 f~ 82 (439)
T PRK15433 81 AG 82 (439)
T ss_pred HH
Confidence 55
No 93
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=90.95 E-value=8.4 Score=39.80 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=27.2
Q ss_pred CchhhHHHHhhhcccccc-cchHHHHHHhcCchhHHH
Q 013718 40 AKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVA 75 (437)
Q Consensus 40 ~s~~~~~~~l~~~~iG~G-iL~LP~~f~~~G~~~g~i 75 (437)
.|..+-.+..++..+|.| +.-.|+-..+-|....++
T Consensus 5 ~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli 41 (523)
T PF00209_consen 5 SSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLI 41 (523)
T ss_dssp S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 455788888999999998 899999988777543333
No 94
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=88.81 E-value=3.3 Score=40.58 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=62.6
Q ss_pred CHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCch
Q 013718 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFN 184 (437)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~ 184 (437)
-..+..+..||+ .|+++..+++.+.|.-++++-....+|+.++..+. .++..|+.++.++-+.++.. .++
T Consensus 264 IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~--------~SY~~~v~if~i~sflvan~-GL~ 333 (431)
T COG1114 264 ILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK--------LSYKTWVIIFTLISFLVANL-GLE 333 (431)
T ss_pred HHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ccHHHHHHHHHHHHHHHHHh-hHH
Confidence 577889999996 78899999999999999999999999999998763 46788888888777666654 355
Q ss_pred hhHHHHHHH
Q 013718 185 AIAGVSLAA 193 (437)
Q Consensus 185 ~l~~~s~~~ 193 (437)
.+-..|+--
T Consensus 334 ~Ii~isvPv 342 (431)
T COG1114 334 QIIKISVPV 342 (431)
T ss_pred HHHHHHHHH
Confidence 555444443
No 95
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=87.64 E-value=29 Score=33.76 Aligned_cols=140 Identities=16% Similarity=0.180 Sum_probs=84.3
Q ss_pred cCCCchhhHHHHhhhccccc-ccchHHHHHHhcCchhHHHHHHHHHHHH-HHHHHHHHHcchh-CCCccccCHHHHHHHH
Q 013718 37 SRNAKWWYSAFHNVTAMVGA-GVLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEM-VPGKRFDRYHELGQHA 113 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~-~~~~~~~~y~~l~~~~ 113 (437)
.|+.+-+-..+....+-+|+ ..++=|.+-.+.|+ |++++...-+-+ +.+...+.+=..+ .++.+..+..|+-++=
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Gl--gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~R 115 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGL--GWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFAR 115 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhch--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHH
Confidence 34455455555555555554 45666888888784 555444333322 2333333331111 1122244788888877
Q ss_pred hCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhH
Q 013718 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIA 187 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~ 187 (437)
+-.+.-.++..+...+...+..++-.+..++.++.... .++..-.++++..+..-..+...+...
T Consensus 116 Y~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g---------idY~tgL~ifa~~V~iYt~fGGFRAvv 180 (473)
T COG4145 116 YQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG---------IDYTTGLLIFAVSVAIYTAFGGFRAVV 180 (473)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC---------CCchhhHHHHHHHHHHHHhhcceeeee
Confidence 65455558888888888888888888888887776643 455666778887777666665544433
No 96
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=85.34 E-value=22 Score=36.80 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=50.8
Q ss_pred cccCCCchhhHHHHhhhcccccc-cchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcch-hCCCccccCHHHHHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE-MVPGKRFDRYHELGQH 112 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~-~~~~~~~~~y~~l~~~ 112 (437)
...|+..++-..+.++.+.+|++ ++++|...++.|.-.....+.. .....++.-... ...+.+..+-.|.-++
T Consensus 42 l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~-----l~~~~~~~~~f~Pvf~~~~v~~~~eYl~~ 116 (585)
T KOG2349|consen 42 LGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNA-----LLSVLLLGWIFIPVFYRLGVTTMYEYLEK 116 (585)
T ss_pred hcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHH-----HHHHHhhheEEEEEEEecCeeehhHHHHH
Confidence 34577777877888888888774 5899988888775432222211 111122221110 0112235577888888
Q ss_pred HhCccccchhhHHHHHHHHh
Q 013718 113 AFGEKLGLYIVVPQQLIVEV 132 (437)
Q Consensus 113 ~~G~~~g~~~~~~~~~~~~~ 132 (437)
-||++ .+.+..+...+..+
T Consensus 117 Rf~~~-~r~l~~l~f~l~~~ 135 (585)
T KOG2349|consen 117 RFGGR-VRYLATLSFILMIF 135 (585)
T ss_pred Hhccc-chhhHHHHHHHHHH
Confidence 88865 43444444444433
No 97
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=83.33 E-value=52 Score=32.87 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=57.5
Q ss_pred CCchhhHHHHhhhcccccc-cchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcc--hhCCCccccCHHHHHHHHhC
Q 013718 39 NAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMH--EMVPGKRFDRYHELGQHAFG 115 (437)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~G-iL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~--~~~~~~~~~~y~~l~~~~~G 115 (437)
-.|...-++..+++.+|-| +--.||..++.|.. +.++.-+++.+..---.++.|.. ++.++....+|+.+.. +
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGg-AFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~ 83 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGG-AFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---K 83 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCcc-hHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---C
Confidence 4566777888889999987 47889998888865 33333333333333344455532 2222222346777664 2
Q ss_pred ccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHH
Q 013718 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 152 (437)
Q Consensus 116 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 152 (437)
++| ...........+..+.-|.++.+-.+.-+...
T Consensus 84 ~~~--~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s 118 (439)
T COG0733 84 KKW--EWIGWFGVLGGFLILSFYSVIGGWILSYLVKS 118 (439)
T ss_pred ccc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 22222333344444444555555555444433
No 98
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=79.42 E-value=8.5 Score=38.46 Aligned_cols=76 Identities=16% Similarity=0.285 Sum_probs=57.5
Q ss_pred CHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCch
Q 013718 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFN 184 (437)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~ 184 (437)
=.....+..+|+ +|+.+..+.+.+.|+-++++-....++.+++..+ .+++.|..+..++.++++... ++
T Consensus 266 il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---------isY~~~v~i~~l~S~~lSn~G-~~ 334 (439)
T PRK15433 266 ILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---------LSYRTLVFILGGFSMVVSNLG-LS 334 (439)
T ss_pred HHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------CcHHHHHHHHHHHHHHHHHhH-HH
Confidence 355678888996 6779999999999999999999999998887643 456777777888878777653 44
Q ss_pred hhHHHHH
Q 013718 185 AIAGVSL 191 (437)
Q Consensus 185 ~l~~~s~ 191 (437)
++-..+.
T Consensus 335 ~II~~s~ 341 (439)
T PRK15433 335 QLIQISV 341 (439)
T ss_pred HHHHHHH
Confidence 4433333
No 99
>PHA02764 hypothetical protein; Provisional
Probab=77.09 E-value=8.5 Score=36.40 Aligned_cols=88 Identities=11% Similarity=0.045 Sum_probs=56.6
Q ss_pred cCCCchhhHHH-HhhhcccccccchHHHHHHhc--CchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHH
Q 013718 37 SRNAKWWYSAF-HNVTAMVGAGVLSLPYAMAQL--GWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (437)
Q Consensus 37 ~~~~s~~~~~~-~l~~~~iG~GiL~LP~~f~~~--G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (437)
-|+.+.+++++ |+.....|.++ +.|+-++.. |.. .+...++.++++........+...+.|+.+ .-....+++
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAG--GdYVYISRA 86 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNG--GDYAYIRTA 86 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ceEEEhHHh
Confidence 46788889888 55555555543 656544433 332 445566777777777777777776666544 556677889
Q ss_pred hCccccchhhHHHHHH
Q 013718 114 FGEKLGLYIVVPQQLI 129 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~ 129 (437)
+||++| .++......
T Consensus 87 FGP~~G-FLvG~a~WL 101 (399)
T PHA02764 87 FSSKFY-TIFGISLWL 101 (399)
T ss_pred hCccHH-HHHHHHHHH
Confidence 998777 665555443
No 100
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=72.52 E-value=62 Score=32.34 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=92.2
Q ss_pred eeeccccccCCcCCCCCCCcccchhhhhHHHHHHHH-HHHHHhhhhhcccccchhhhhhCCCCchHHHHHHHHHHHHH--
Q 013718 248 NVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALC-YFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVH-- 324 (437)
Q Consensus 248 ~~i~~i~~~m~~~~k~p~~~~~~~~~~~~~~~~~~~-y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~-- 324 (437)
..-.....++ .+-.+++-++.+..+..+.... .++....++..|+.--+...-+-+.+.+-............
T Consensus 206 F~~h~~i~si----~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~ 281 (415)
T COG0814 206 FGFHGNIPSL----VNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINS 281 (415)
T ss_pred hhCCccchHH----HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcc
Confidence 3344444445 4444445444355454444444 45667777777766333333322333333344444443333
Q ss_pred HHhhcceeccchHHHHHHHHhh----------hcCCCccchhhhhhhHHHHHHHHHHHhhccc-hhhhhhhhhcchhhhh
Q 013718 325 VIGSYQIYAMPVFDMIETLLVK----------KLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPT 393 (437)
Q Consensus 325 ~~~s~pl~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~~~G~~~~~~l 393 (437)
...++|.+.++.+...-..+.- ..+.++.+..|.........++.+.++..|. +....+.+|++..+..
T Consensus 282 ~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ig 361 (415)
T COG0814 282 PILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIG 361 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3378888888888775442211 1111233444667777778888888888886 8888898999999999
Q ss_pred Hhhhcceeee
Q 013718 394 TYFVSQILPL 403 (437)
Q Consensus 394 ~~ilP~l~~l 403 (437)
+-++|.++++
T Consensus 362 a~i~~~ll~~ 371 (415)
T COG0814 362 APIIPALLFI 371 (415)
T ss_pred HHHHHHHHHH
Confidence 9999999999
No 101
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=71.42 E-value=1.2e+02 Score=30.49 Aligned_cols=332 Identities=15% Similarity=0.152 Sum_probs=145.9
Q ss_pred cccCCCchhhHHHHhhhcccccccc-hHHHHHHhcCchhHHHHHHHHHHHHHHHHH---HHHHcchhCCCcc-cc-CHHH
Q 013718 35 TSSRNAKWWYSAFHNVTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLW---QMVEMHEMVPGKR-FD-RYHE 108 (437)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL-~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~---~l~~~~~~~~~~~-~~-~y~~ 108 (437)
.++++.|.+|+++.-+.+-+|+|=. ..+.|.+ .|-..++..+-+.+++..-|.+ .|..-.++++++. .+ .=.-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~-~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIA-LGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHH-cCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 3567789999999999999999864 4555565 4667677777777776544422 2222222122111 00 0111
Q ss_pred HHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHH
Q 013718 109 LGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (437)
Q Consensus 109 l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~ 188 (437)
.-++-+|.||--.+.. ...+..||. ..-..-+..+.+.+++-. +++ ...+-+...++.-+.....++.+..
T Consensus 137 Yi~kGl~~r~l~v~FA-~~li~afg~--i~n~vQ~NsIa~a~~~af-----~~~-~~~~gi~la~l~~~VI~GGi~rIa~ 207 (452)
T COG1115 137 YIEKGLGMRWLAVLFA-FALIAAFGF--IGNGVQSNSIASALANAF-----GIP-PLVTGIVLALLVALVIFGGIKRIAK 207 (452)
T ss_pred HHHhhcCCcHHHHHHH-HHHHHHHHh--hcchhhHHHHHHHHHHhc-----CCc-HHHHHHHHHHHHHHHHHcchHHHHH
Confidence 3344444332212222 122222221 011122222222333211 122 2233444444555556677777777
Q ss_pred HHHHHHHH-HHHHHHHHhhhheec-cCCCCcc-----ccccccCccchH------hHHHHhhhhhhhhccc-ceeecccc
Q 013718 189 VSLAAAVM-SLSYSTIAWSASVRK-GVQPDVA-----YGYKAKTAAGTV------FNFFSALGDVAFAYAG-HNVVLEIQ 254 (437)
Q Consensus 189 ~s~~~~~~-~~~~~~i~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~------~~~~~~~~i~~faf~~-~~~i~~i~ 254 (437)
++..-+-+ .+.|+...++....+ +..|+.- ..+......... .-+...+.--+||-+. ....|...
T Consensus 208 v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aa 287 (452)
T COG1115 208 VSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAA 287 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHH
Confidence 76666553 344554443332222 1122211 011100001111 1344556666777654 66677666
Q ss_pred ccCCcCCCCCCCcccchhhh--h-HHHHHHHHHHHHHhhhhhcccccchh-----hhhhCCCCchHHHHHHHHHHHHHHH
Q 013718 255 ATIPSTPEKPSKGPMWRGVV--V-AYIVVALCYFPVALIGYWMFGNKVED-----NILLSLEKPTWLIVMANFFVVVHVI 326 (437)
Q Consensus 255 ~~m~~~~k~p~~~~~~~~~~--~-~~~~~~~~y~~~g~~gy~~fg~~~~~-----~il~~~~~~~~~~~~~~~~~~i~~~ 326 (437)
..-+- +||.+.-+...+. + ++++|++--+.+=+.|-+..++..++ ..+.+.- .++...+..+.+.+-.+
T Consensus 288 AaA~~--~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~-g~~G~~fv~i~l~lFaf 364 (452)
T COG1115 288 AAAKT--DHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHL-GSWGSYFVAIALFLFAF 364 (452)
T ss_pred HhhcC--CCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhc-CccHHHHHHHHHHHHHH
Confidence 65422 6777644222211 1 33333333222223333333332122 1222211 23444444444444444
Q ss_pred hhcceeccchHHHHHHHHhhhcCCCccchhhhhhhHHHHHHHHHHHhh-ccchhhhhhhhh
Q 013718 327 GSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGIT-FPFFGGLLGFFG 386 (437)
Q Consensus 327 ~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~-~p~~~~i~~~~G 386 (437)
+|.--..+-..++++-+. + ++..-...|.+.+....+-+.. .+-...+-++..
T Consensus 365 TTIlg~yyyge~~~~fl~-~------~k~~~~~~r~~~l~~v~~Ga~~~l~~vW~laD~~~ 418 (452)
T COG1115 365 TTILGWYYYGEKNIEFLF-G------SKKAILLYRLIVLAMVFLGAVLSLDLVWNLADLFM 418 (452)
T ss_pred HHHHHHHHHHHHHHHHHh-C------CchHHHHHHHHHHHHHHHhccccHHHHHHHHHHhc
Confidence 444333333444444443 1 1123346666666655555543 344445555443
No 102
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=67.92 E-value=1.7e+02 Score=31.01 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=31.8
Q ss_pred CchhhHHHHhhhcccccccch-HHHHHHhcCchhHHHHHHHHHHH
Q 013718 40 AKWWYSAFHNVTAMVGAGVLS-LPYAMAQLGWGPGVAILILSWII 83 (437)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~-LP~~f~~~G~~~g~i~l~~~~~~ 83 (437)
.+..+-.+..++..+|-|=.= .|+...+-|...-++-.+++.++
T Consensus 38 ~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l 82 (629)
T KOG3660|consen 38 KSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFL 82 (629)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 377899999999999998766 99998887864344433443333
No 103
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=65.70 E-value=1.5e+02 Score=29.44 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=21.9
Q ss_pred cchhhhhhhHHHHHHHHHHHhhc--cchhhhhhhhhcchh
Q 013718 353 TRLLRFVVRNLYVASTMFIGITF--PFFGGLLGFFGGFAF 390 (437)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~ia~~~--p~~~~i~~~~G~~~~ 390 (437)
.+.++...|.+.++++.+++... .+...++-+...+-+
T Consensus 331 ~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~aQv~~~ 370 (390)
T TIGR01197 331 PWLRRLITRAIAIIPCLLVAAFGGREGLTGALNASQVVLS 370 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 45566677776666666666653 445555555444333
No 104
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=64.99 E-value=1.7e+02 Score=29.95 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=77.7
Q ss_pred ccCCCchhhHHHHhhhcccccccchHHHH-----HHh--cCc----h----hHHHHHHHHHHHHHHHHHHHHHc---chh
Q 013718 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYA-----MAQ--LGW----G----PGVAILILSWIITLYTLWQMVEM---HEM 97 (437)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-----f~~--~G~----~----~g~i~l~~~~~~~~~t~~~l~~~---~~~ 97 (437)
++++-|.++-...+..+-+|+|++--..+ +.+ .|. . .+.-...+=+-+..|+.+.+.-. ...
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFF 150 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheee
Confidence 34567888999999999999999865422 111 111 0 11111111112222333322221 111
Q ss_pred CCCccccC-----HHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHH
Q 013718 98 VPGKRFDR-----YHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS 172 (437)
Q Consensus 98 ~~~~~~~~-----y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 172 (437)
+++++..+ ++-+.++.-| +.| .++|+...+...+....-+-.....+..-++...+-+.. ......+++...
T Consensus 151 y~k~~~~~~ss~l~pl~g~~~~g-~~g-~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~-~~~~~~ii~~~~ 227 (485)
T PF02028_consen 151 YNKGKPLRISSALYPLLGDRING-PLG-KIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNT-FGLQIIIIIVIT 227 (485)
T ss_dssp HTS---SSGGGGCHHHHHHHHHS-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSST-HHHHHHHHHHHH
T ss_pred eecCCCCchhhhhhhhcCCcccC-cch-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCc-hHHHHHHHHHHH
Confidence 12222223 4445555545 356 777877777766666666666666666666665543222 111122222333
Q ss_pred HHHHHhCCCCc-hhhHHHHHHHHHHHHH
Q 013718 173 VHFVLSHLPNF-NAIAGVSLAAAVMSLS 199 (437)
Q Consensus 173 ~i~pl~~~~~l-~~l~~~s~~~~~~~~~ 199 (437)
++.-.+....+ |..+++|.+.+.+.+.
T Consensus 228 ~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ 255 (485)
T PF02028_consen 228 VIFTISAVSGLDKGIKRLSNINVYLAFA 255 (485)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34445555555 4477777777665444
No 105
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=54.06 E-value=2.1e+02 Score=29.51 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=37.8
Q ss_pred CHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHH
Q 013718 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 152 (437)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 152 (437)
...++-....|+|.. ..+....++..+..+.+-++..++..-..-++
T Consensus 326 p~~~i~~~~lg~k~~-v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGA-VFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred hHHHHHHHhcCCCce-EehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 688888899998866 88888888888888888888888877666554
No 106
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=53.01 E-value=1.8e+02 Score=29.88 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=63.5
Q ss_pred cCCCchhhHHHHhhhcccccccchHH----HHHHhc---Cch--------hHHHHHHHHHHHHHHHHHHHHHcch---hC
Q 013718 37 SRNAKWWYSAFHNVTAMVGAGVLSLP----YAMAQL---GWG--------PGVAILILSWIITLYTLWQMVEMHE---MV 98 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~LP----~~f~~~---G~~--------~g~i~l~~~~~~~~~t~~~l~~~~~---~~ 98 (437)
+.+-|..+-...+..+-+|+|++-.+ ....+. |-- .+.....+-+-+..++.+.+....- .+
T Consensus 85 ~PEfs~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf~~ 164 (537)
T COG1292 85 KPEFSTLSWLAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALALAYFHY 164 (537)
T ss_pred CCCcchhHHHHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhheeeE
Confidence 34466677788999999999997554 222211 111 2333344444444455554444321 11
Q ss_pred CCccc-----cCHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhc
Q 013718 99 PGKRF-----DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCK 155 (437)
Q Consensus 99 ~~~~~-----~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 155 (437)
++++. .=|+-+.++.-|+ +| ..+|++-.+...+....-+-+.+..+..-++...+
T Consensus 165 rk~~pl~lss~l~Pllg~~~~G~-~G-~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~g 224 (537)
T COG1292 165 RKGLPLLLSSALYPLLGERIKGP-IG-HAVDILAIIATLFGIATSLGLGALQLTAGLSYLFG 224 (537)
T ss_pred ecCCCchhhhhhhhhhcccccCc-cc-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 11111 1245555555463 67 77888776666655555666666666666666553
No 107
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=50.81 E-value=44 Score=26.69 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=29.3
Q ss_pred chhhHHHHhhhcccccccchHHHHHHhc---C-chhHHHHHHHHHHHH----HHHHHHHHHcchhCCCccccCHHHH
Q 013718 41 KWWYSAFHNVTAMVGAGVLSLPYAMAQL---G-WGPGVAILILSWIIT----LYTLWQMVEMHEMVPGKRFDRYHEL 109 (437)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~LP~~f~~~---G-~~~g~i~l~~~~~~~----~~t~~~l~~~~~~~~~~~~~~y~~l 109 (437)
.|-.-.+.+.=.++|+..+.+....... | ---++. +++.++++ .|-.+++..+...++|- +|.++
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~-llilG~L~fIPG~Y~~~i~y~a~rg~~Gy---sf~~I 112 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWA-LLILGILCFIPGFYHTRIAYYAWRGYKGY---SFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccch-HHHHHHHHHhccHHHHHHHHHHHcCCCCC---CHhhC
Confidence 3444445555555565555555443321 1 112222 23333333 35555555555545544 56654
No 108
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=47.42 E-value=3e+02 Score=27.41 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=41.3
Q ss_pred CchhhHHHHhhhcccccccchHHHHHH-hcC--chhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhCc
Q 013718 40 AKWWYSAFHNVTAMVGAGVLSLPYAMA-QLG--WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (437)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~LP~~f~-~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 116 (437)
...+..-+.+..-..|+|=+-.|-... ++| +..+.+-.++.++. .=++.-..-...++ ++++++++. ||
T Consensus 5 k~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVg----lPlLgiIa~a~~g~---~~~~l~~~i-~~ 76 (431)
T COG1114 5 KDIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVG----LPLLGIIAVALYGG---GVESLATRI-GP 76 (431)
T ss_pred hhHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhh----HHHHHHHHhhccCC---CHHHHhhhc-cc
Confidence 345677788888999999999996543 223 34444444444432 22222211112222 788888887 55
Q ss_pred ccc
Q 013718 117 KLG 119 (437)
Q Consensus 117 ~~g 119 (437)
+.|
T Consensus 77 ~fg 79 (431)
T COG1114 77 WFG 79 (431)
T ss_pred hHH
Confidence 555
No 109
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=41.54 E-value=1.9e+02 Score=29.34 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=60.8
Q ss_pred cCCCchhhHHHHhhhcccccccchHH----HHHH-h--cCchh---------HHHHHHHHHHHHHHHHHHHHHc---chh
Q 013718 37 SRNAKWWYSAFHNVTAMVGAGVLSLP----YAMA-Q--LGWGP---------GVAILILSWIITLYTLWQMVEM---HEM 97 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~LP----~~f~-~--~G~~~---------g~i~l~~~~~~~~~t~~~l~~~---~~~ 97 (437)
+++-|.++-+..+..+-+|+|++--. .... . .|.-+ +.....+=+-+..|+.+.+.-. ...
T Consensus 34 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~~ 113 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYFH 113 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhh
Confidence 35567778888899999999987554 2222 1 12111 1111122222333443433332 222
Q ss_pred CCCccccCHHHHHHHHhCcc----ccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhc
Q 013718 98 VPGKRFDRYHELGQHAFGEK----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCK 155 (437)
Q Consensus 98 ~~~~~~~~y~~l~~~~~G~~----~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 155 (437)
+++++..+.++..+-.+|+| .| .++|+...+...+....-+-.....+..-+....+
T Consensus 114 ~rk~~~~~iss~~~pllG~~~~g~~g-~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~g 174 (453)
T TIGR00842 114 VRKGLPLRLSSALVPLLGERVNGPIG-KAIDIMALVATLFGVATSLGLGAPQINAGLSALFG 174 (453)
T ss_pred eecCCCCchhhhhhcccCCcccCccH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 33334457788888778754 45 56666655555544444445555555555555443
No 110
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=37.76 E-value=40 Score=21.60 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcccccc
Q 013718 272 GVVVAYIVVALCYFPVALIGYWMFGNKV 299 (437)
Q Consensus 272 ~~~~~~~~~~~~y~~~g~~gy~~fg~~~ 299 (437)
+...+..+..++..+.|...|.+||...
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 3445566666777777888899998643
No 111
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=36.76 E-value=2.7e+02 Score=28.62 Aligned_cols=161 Identities=16% Similarity=0.097 Sum_probs=79.0
Q ss_pred cCCCchhhHHHHhhhcccccccchHH----HHHHh---cCchh--------HHHHHHHHHHHHHHHHHHHHHc---chhC
Q 013718 37 SRNAKWWYSAFHNVTAMVGAGVLSLP----YAMAQ---LGWGP--------GVAILILSWIITLYTLWQMVEM---HEMV 98 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~LP----~~f~~---~G~~~--------g~i~l~~~~~~~~~t~~~l~~~---~~~~ 98 (437)
+++-|.++-+..+..+-+|+|++--. ....+ .|.-+ +.....+=+-+..|+.+.+.-. ...+
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y 162 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFF 162 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 55677788888999999999997653 22221 12111 1111122222333444443332 2222
Q ss_pred CCccc-cCHHHHHHHHhCcc-----ccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHH
Q 013718 99 PGKRF-DRYHELGQHAFGEK-----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS 172 (437)
Q Consensus 99 ~~~~~-~~y~~l~~~~~G~~-----~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 172 (437)
++++. .+.++..+-.+|+| .| .++|+...+...+....-+-.....+..-++...+-+.. ......+++...
T Consensus 163 ~~~~p~l~iss~~~pllG~~~~~g~~G-~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~-~~~~~~ii~~i~ 240 (504)
T PRK03356 163 VRKMDVIRPSSTLVPLVGEKHAKGLFG-TIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHT-LQLDAIIITCWI 240 (504)
T ss_pred hcCCCcccHHHHHHHHcCCCcccCchH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHH
Confidence 33333 26778888888842 45 567777666555555555555555555555555543222 111222222222
Q ss_pred HHHHHhCCCCc-hhhHHHHHHHHHHHHH
Q 013718 173 VHFVLSHLPNF-NAIAGVSLAAAVMSLS 199 (437)
Q Consensus 173 ~i~pl~~~~~l-~~l~~~s~~~~~~~~~ 199 (437)
+++-.+....+ |.++++|.+.+...+.
T Consensus 241 ~if~~S~~~Gl~kGIk~LS~~N~~la~~ 268 (504)
T PRK03356 241 ILNAICVACGLQKGVRIASDVRSYLSFL 268 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332 4555666555554433
No 112
>CHL00020 psbN photosystem II protein N
Probab=36.55 E-value=34 Score=21.88 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcccccc
Q 013718 272 GVVVAYIVVALCYFPVALIGYWMFGNKV 299 (437)
Q Consensus 272 ~~~~~~~~~~~~y~~~g~~gy~~fg~~~ 299 (437)
+...+..+..++..+.|..-|.+||...
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 4455666677777777778888898643
No 113
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=35.46 E-value=41 Score=21.80 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=21.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcccccc
Q 013718 271 RGVVVAYIVVALCYFPVALIGYWMFGNKV 299 (437)
Q Consensus 271 ~~~~~~~~~~~~~y~~~g~~gy~~fg~~~ 299 (437)
.+...+..+..++..+.|..-|.+||...
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 45556667777777777888888899643
No 114
>TIGR00909 2A0306 amino acid transporter.
Probab=34.67 E-value=3.9e+02 Score=26.46 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=36.4
Q ss_pred CHHHHHHHHhCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHH
Q 013718 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 152 (437)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 152 (437)
...++.++..|+. +..++.+...+.+++...+.+...++.+....++
T Consensus 265 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQGI-GGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567777777764 4478888899999999999999888888776544
No 115
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=34.28 E-value=1.2e+02 Score=30.65 Aligned_cols=168 Identities=14% Similarity=0.132 Sum_probs=88.1
Q ss_pred CccccchhhHHHHHHHHhHHhhhhHhhh-ccchHHHHHHHhcCCCCCccc-hhhhHHHHHHHHHHhCCCC-chhhHHHHH
Q 013718 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTG-GKSLHKVHELLCKEPCKEIKL-SYFIMIFASVHFVLSHLPN-FNAIAGVSL 191 (437)
Q Consensus 115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~-~~~l~~~~~~~~~~~~~~~~~-~~~~~i~~~~i~pl~~~~~-l~~l~~~s~ 191 (437)
|.+.|.+++.+...+.+.|..++--.+. +.-+..++|.+. +++| .+...+.+.+++|=-++++ =+.+..++.
T Consensus 339 G~RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~Pkyi-----nIrRG~~~~a~ia~a~~PWnll~SSs~F~t~Lss 413 (572)
T KOG2466|consen 339 GARAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYI-----NIRRGALICAIIAWAICPWNLLSSSSKFLTALSS 413 (572)
T ss_pred ccchhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceE-----EecccHHHHHHHHHHhCchHHhccccHHHHHHHH
Confidence 4457778888888888888877544433 334455555543 2333 3344556788888877774 555667777
Q ss_pred HHHHHHHHHHHHHh-hhheeccCCCCcccccc--ccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcc
Q 013718 192 AAAVMSLSYSTIAW-SASVRKGVQPDVAYGYK--AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (437)
Q Consensus 192 ~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~ 268 (437)
.++++.=+..+++. ++.+.++.. ..++.+. +...... ..-.+-=.+..|-.++.+++|-+..|...+.|.|+-.-
T Consensus 414 ysvfLspiagViiaDyF~iRk~~~-~i~~~y~~~~g~yY~~-~~G~NwRA~vA~vcG~~P~lpG~a~~V~~~~~v~~G~~ 491 (572)
T KOG2466|consen 414 YSVFLSPIAGVIIADYFLIRKGYY-KITHLYSLSKGSYYYF-KKGINWRAFVAYVCGMAPNLPGFAGSVGADIKVPDGAV 491 (572)
T ss_pred HHHHHhhccceEeehhheeeccee-eeeeeeecCCCceeee-ecCccHHHHHHHHhccccCCcchhhhcCcccccccceE
Confidence 77665433322222 122223221 1111110 1100000 01111233456667788999999999854445554211
Q ss_pred --cchhhhhHHHHHHHHHHHHHh
Q 013718 269 --MWRGVVVAYIVVALCYFPVAL 289 (437)
Q Consensus 269 --~~~~~~~~~~~~~~~y~~~g~ 289 (437)
.......++.++...|.....
T Consensus 492 ~~yy~~yf~sf~isf~vYwiLc~ 514 (572)
T KOG2466|consen 492 KLYYLDYFFSFLISFLVYWILCL 514 (572)
T ss_pred EEEechHHHHHHHHHHHHHHHHh
Confidence 112334667777777765543
No 116
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=34.10 E-value=36 Score=25.34 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=35.9
Q ss_pred hhhhhhhcccceeeccccccCCcCCCCCCCcccchhhhhHHHHHHHHHHHHHhhhhhcccccchhhhhhCC
Q 013718 237 LGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL 307 (437)
Q Consensus 237 ~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~ 307 (437)
.|+...+-.|.....+..+.- .+|+++.++....+++++. +-++.|++.|..||.-.++.....+
T Consensus 17 ~GIiLL~~ACIFAfidFSK~~----s~~~~~~wRalSii~FIlG--~vl~lGilifs~y~~C~~~~~~~r~ 81 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKNT----SNVTDYVWRALSVTCFIVG--AVLLLGLFVFSMYRKCSGSMPYERL 81 (91)
T ss_pred HHHHHHHHHHHHhhhhhhccC----CCCcchhHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCCceeecc
Confidence 455555555555556666653 3566655433333554444 4566788888888844443333334
No 117
>PRK09950 putative transporter; Provisional
Probab=32.57 E-value=5.7e+02 Score=26.33 Aligned_cols=161 Identities=18% Similarity=0.190 Sum_probs=83.1
Q ss_pred cCCCchhhHHHHhhhcccccccchHH----HHHHh---cCchh--------HHHHHHHHHHHHHHHHHHHHH---cc-hh
Q 013718 37 SRNAKWWYSAFHNVTAMVGAGVLSLP----YAMAQ---LGWGP--------GVAILILSWIITLYTLWQMVE---MH-EM 97 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~LP----~~f~~---~G~~~--------g~i~l~~~~~~~~~t~~~l~~---~~-~~ 97 (437)
+++-|.++-+..+..+-+|+|++--- ....+ .|.-+ +.....+=+-+..|+.+.+.- +. ..
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~ 160 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFH 160 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45677788888999999999987543 22111 12111 111112222233333333333 22 12
Q ss_pred CCCccccCHHHHHHHHhCcc----ccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHH
Q 013718 98 VPGKRFDRYHELGQHAFGEK----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASV 173 (437)
Q Consensus 98 ~~~~~~~~y~~l~~~~~G~~----~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 173 (437)
+++++..+.++..+-.+|++ .| .++|+...+...+....-+-.....+..-+....+.+.. ......+++...+
T Consensus 161 ~rk~~pl~iss~~~pllG~~~~g~~G-~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~-~~~~~~ii~vi~~ 238 (506)
T PRK09950 161 VRKNKGLSLSGIIAAITGVKPQGPWG-RLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNN-FTVQAFVILLSGV 238 (506)
T ss_pred hhcCCCCchHHhhHhhcCCCCCCcch-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHH
Confidence 23334457888888888753 45 567777666655555555555555565556555433222 1112222223333
Q ss_pred HHHHhCCCCc-hhhHHHHHHHHHHHHH
Q 013718 174 HFVLSHLPNF-NAIAGVSLAAAVMSLS 199 (437)
Q Consensus 174 i~pl~~~~~l-~~l~~~s~~~~~~~~~ 199 (437)
++-++....+ |.++++|.+.+.+.+.
T Consensus 239 if~~S~~~Gl~kGIk~LS~~N~~la~~ 265 (506)
T PRK09950 239 IFCLSSYIGIDNGLQRLSKMVGWGAFL 265 (506)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4445555554 5666777766664443
No 118
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=26.87 E-value=7.8e+02 Score=26.06 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcc
Q 013718 71 GPGVAILILSWIITLYTLWQMVEMH 95 (437)
Q Consensus 71 ~~g~i~l~~~~~~~~~t~~~l~~~~ 95 (437)
+.|++.+++.++.-..+.....-+.
T Consensus 49 vlGvlSLIfWtL~livtiKYv~ivl 73 (622)
T PRK10745 49 VFGFLSLIFWLLILVVSIKYLTFVM 73 (622)
T ss_pred eehhhHHHHHHHHHHHHHHhheEEE
Confidence 4577777776666666655554443
No 119
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=26.86 E-value=42 Score=25.23 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=37.0
Q ss_pred HhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhhhHHHHHHHHHHHHHhhhhhcccccc
Q 013718 235 SALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV 299 (437)
Q Consensus 235 ~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~ 299 (437)
...|+...+..|.....+..+. ++|.++.++....+++++. +-+..|++-|.+||..-
T Consensus 15 li~GiiLL~~aCIfAfidfsK~-----~~~~~~~wRalSii~FI~g--iil~lG~~i~s~ygr~C 72 (92)
T PF05767_consen 15 LIGGIILLIAACIFAFIDFSKN-----TKPTDYTWRALSIICFILG--IILTLGIVIFSMYGRYC 72 (92)
T ss_pred HHHHHHHHHHHHHHHhhhhccC-----CCCchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhc
Confidence 3456667777777777777776 5677655433333555444 55677888888887543
No 120
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=26.26 E-value=3.9e+02 Score=27.55 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=44.7
Q ss_pred HhHHhhhhHhhhccchHHHHHHHhc---CCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 013718 131 EVGVCIVYMVTGGKSLHKVHELLCK---EPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (437)
Q Consensus 131 ~~g~~~~y~i~~~~~l~~~~~~~~~---~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~ 195 (437)
....+..+.+..+|...-++..... .+.+.+.+..|.++.+++-.-+.+...++.++..+++.-.
T Consensus 411 ~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~ii~al 478 (537)
T COG1292 411 ALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAAIITAL 478 (537)
T ss_pred HHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 3445566788888888888877652 2344456777888777776666666677887777766644
No 121
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=25.12 E-value=7.9e+02 Score=25.57 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=40.2
Q ss_pred hCccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHH-----hcCCCCCccchhhhHH-HHHHHHHHhCCCCchhhH
Q 013718 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELL-----CKEPCKEIKLSYFIMI-FASVHFVLSHLPNFNAIA 187 (437)
Q Consensus 114 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~i-~~~~i~pl~~~~~l~~l~ 187 (437)
.|..+.+.++.+......++...+.+...+..+-.+-++. ...-.+..+.+...++ ..++...+.++.+++.+.
T Consensus 308 ~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~ 387 (557)
T TIGR00906 308 VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALV 387 (557)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3433444566666666666666666666666665543331 1110111222333332 223323333444566666
Q ss_pred HHHHHHHHHHHH
Q 013718 188 GVSLAAAVMSLS 199 (437)
Q Consensus 188 ~~s~~~~~~~~~ 199 (437)
....++......
T Consensus 388 ~l~sig~ll~y~ 399 (557)
T TIGR00906 388 DLLSIGTLLAYS 399 (557)
T ss_pred HHHHHHHHHHHH
Confidence 665555554433
No 122
>PRK09928 choline transport protein BetT; Provisional
Probab=22.97 E-value=5e+02 Score=27.83 Aligned_cols=161 Identities=13% Similarity=0.072 Sum_probs=74.7
Q ss_pred cCCCchhhHHHHhhhcccccccchHHH----HHH-h--cCch-------hHHHHHHHHHHHHHHHHHHHHHc---chhCC
Q 013718 37 SRNAKWWYSAFHNVTAMVGAGVLSLPY----AMA-Q--LGWG-------PGVAILILSWIITLYTLWQMVEM---HEMVP 99 (437)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~LP~----~f~-~--~G~~-------~g~i~l~~~~~~~~~t~~~l~~~---~~~~~ 99 (437)
+++-|.++-+..+..+-+|+|++---. ... . .|-. .+.....+=+-+..|+.+.+.-. ...+.
T Consensus 90 kPefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr 169 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYR 169 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 456777888889999999999975432 211 1 1210 12222233333444444444332 21222
Q ss_pred CccccCHHHHHHHHhCcc----ccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHH
Q 013718 100 GKRFDRYHELGQHAFGEK----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHF 175 (437)
Q Consensus 100 ~~~~~~y~~l~~~~~G~~----~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~ 175 (437)
+++..+.+...+-.+|++ +| .++|+...+...+....-+-+....+..-+....+-+.. ......+++...++.
T Consensus 170 ~~~pl~issal~pllG~ri~G~~G-~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~~-~~~q~~ii~vi~~i~ 247 (679)
T PRK09928 170 YNLPLTIRSALYPIFGKRINGPIG-HSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPES-LAAQAALIALSVIIA 247 (679)
T ss_pred CCCCCchhHhhhhhcCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHHH
Confidence 222345666666666643 56 566666554444433333444444444444444332221 111122222223333
Q ss_pred HHhCCCCc-hhhHHHHHHHHHHHHH
Q 013718 176 VLSHLPNF-NAIAGVSLAAAVMSLS 199 (437)
Q Consensus 176 pl~~~~~l-~~l~~~s~~~~~~~~~ 199 (437)
-++....+ |.++++|.+.+.+.+.
T Consensus 248 ~~S~~sGl~KGIk~LS~lN~~La~~ 272 (679)
T PRK09928 248 TISVTSGVNKGIRVLSELNVLLALG 272 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333 5556666666554433
No 123
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=21.76 E-value=8.6e+02 Score=24.75 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=36.1
Q ss_pred ccchhhhhhhHHHHHHHHHHHhhc--cchhhhhhhhhcchhhhhHhhhcceeee
Q 013718 352 PTRLLRFVVRNLYVASTMFIGITF--PFFGGLLGFFGGFAFAPTTYFVSQILPL 403 (437)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~ia~~~--p~~~~i~~~~G~~~~~~l~~ilP~l~~l 403 (437)
++|.+|.+.|.+.++++.++++.. .+++.+.++.-.+-+..+-|..=+++++
T Consensus 354 ~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~f 407 (503)
T KOG1291|consen 354 PPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTF 407 (503)
T ss_pred hHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhh
Confidence 458899999999999999999985 4577777765544443444433355555
Done!