BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013719
         (437 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6LX63|PPNK_METMP Probable inorganic polyphosphate/ATP-NAD kinase OS=Methanococcus
           maripaludis (strain S2 / LL) GN=ppnK PE=3 SV=1
          Length = 566

 Score = 32.0 bits (71), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 30/199 (15%)

Query: 128 FARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDC---VNDLTK---ASSGYV 181
           FA D + + +KF+ +   F  I     +A+++  +A    D    VN+ T+    ++GYV
Sbjct: 177 FAHDISIDTLKFIKD-RRFRRIRLFGSIALEMCYVAKGALDAFINVNETTRLCDIAAGYV 235

Query: 182 FVSKK----IERNVQQI-FDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLG-KII 235
            + +      ++N Q++  D+ VNS       K S I   +ML K  LV    + G +  
Sbjct: 236 IIKEAGGIVTDKNGQEVNLDLDVNS-------KVSVICSNEMLHK-KLVG---IFGNRWR 284

Query: 236 LKTISGGLVAGEEEIDEEEMPEVLDKDSVENYLAKKNRKRGLQPSSAE-LKLKTAKKCKW 294
           +K  + G+++    ID EE  EV   D+V  YL  K  K  L  S+   LK +  KKC  
Sbjct: 285 IKPTNFGIIS---RIDNEESIEV--ADNVIKYLDSKGIKYELDSSTYNALKNRLTKKCDI 339

Query: 295 TEKFSSINHELSMNKEDVV 313
                 I+H +S+  +  V
Sbjct: 340 ISNIEEISHMISIGGDGTV 358


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,828,866
Number of Sequences: 539616
Number of extensions: 6753916
Number of successful extensions: 23594
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 486
Number of HSP's that attempted gapping in prelim test: 22108
Number of HSP's gapped (non-prelim): 1469
length of query: 437
length of database: 191,569,459
effective HSP length: 120
effective length of query: 317
effective length of database: 126,815,539
effective search space: 40200525863
effective search space used: 40200525863
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)