Query 013719
Match_columns 437
No_of_seqs 37 out of 39
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 06:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2159 tRNA nucleotidyltransf 99.9 1.4E-28 3.1E-33 246.7 1.8 187 2-190 207-410 (416)
2 PRK11623 pcnB poly(A) polymera 98.3 7.7E-07 1.7E-11 92.1 6.1 93 1-96 238-331 (472)
3 TIGR01942 pcnB poly(A) polymer 98.2 1.9E-06 4.2E-11 87.8 5.1 92 1-96 193-285 (410)
4 PF12627 PolyA_pol_RNAbd: Prob 97.9 6E-06 1.3E-10 61.8 2.8 52 2-53 13-64 (64)
5 PRK13298 tRNA CCA-pyrophosphor 94.6 0.095 2.1E-06 54.3 7.3 46 6-51 167-212 (417)
6 COG0617 PcnB tRNA nucleotidylt 94.0 0.023 4.9E-07 56.7 1.3 52 3-54 185-236 (412)
7 PRK13299 tRNA CCA-pyrophosphor 93.1 0.051 1.1E-06 55.1 1.9 46 2-48 182-227 (394)
8 PRK10885 cca multifunctional t 90.4 1.4 3E-05 45.2 8.8 45 7-51 168-212 (409)
9 PF13414 TPR_11: TPR repeat; P 84.8 2.4 5.2E-05 30.9 4.9 41 91-131 21-63 (69)
10 TIGR02692 tRNA_CCA_actino tRNA 80.8 0.97 2.1E-05 46.5 2.0 46 5-50 199-244 (466)
11 PRK13297 tRNA CCA-pyrophosphor 78.5 1.3 2.8E-05 45.6 2.1 45 7-51 177-221 (364)
12 PF13431 TPR_17: Tetratricopep 78.0 2.6 5.7E-05 28.9 2.8 31 96-126 2-33 (34)
13 PF13432 TPR_16: Tetratricopep 77.5 5.8 0.00013 28.7 4.7 42 91-132 15-57 (65)
14 PF13371 TPR_9: Tetratricopept 73.1 7.8 0.00017 28.4 4.5 42 92-133 14-56 (73)
15 PRK13296 tRNA CCA-pyrophosphor 72.7 3.2 7E-05 42.9 3.1 47 6-54 167-213 (360)
16 cd00189 TPR Tetratricopeptide 63.0 20 0.00044 24.1 4.6 44 91-134 18-62 (100)
17 PF14559 TPR_19: Tetratricopep 56.5 30 0.00065 24.9 4.8 43 92-134 10-53 (68)
18 cd05804 StaR_like StaR_like; a 54.4 23 0.0005 33.0 4.9 42 92-133 133-175 (355)
19 PF13429 TPR_15: Tetratricopep 53.1 17 0.00037 33.5 3.7 40 92-131 233-273 (280)
20 PRK15359 type III secretion sy 51.9 31 0.00067 29.7 4.9 40 92-131 77-117 (144)
21 KOG1173 Anaphase-promoting com 51.4 15 0.00033 40.5 3.6 58 88-145 470-530 (611)
22 PRK15359 type III secretion sy 50.6 31 0.00068 29.7 4.8 43 92-134 43-86 (144)
23 PRK11189 lipoprotein NlpI; Pro 46.4 39 0.00085 32.3 5.2 41 92-132 117-158 (296)
24 PRK10370 formate-dependent nit 42.4 50 0.0011 30.2 5.0 40 92-131 92-135 (198)
25 TIGR02552 LcrH_SycD type III s 41.1 61 0.0013 26.1 4.8 35 96-130 74-109 (135)
26 KOG2610 Uncharacterized conser 40.9 38 0.00083 36.2 4.4 54 77-131 165-234 (491)
27 PRK10370 formate-dependent nit 40.8 70 0.0015 29.3 5.7 33 98-130 135-168 (198)
28 TIGR02521 type_IV_pilW type IV 40.5 69 0.0015 26.4 5.1 43 92-134 154-197 (234)
29 PF12895 Apc3: Anaphase-promot 39.6 47 0.001 25.4 3.8 40 92-131 8-50 (84)
30 PRK11189 lipoprotein NlpI; Pro 39.0 60 0.0013 31.1 5.1 43 90-132 81-124 (296)
31 TIGR02552 LcrH_SycD type III s 36.5 88 0.0019 25.1 5.0 44 92-135 36-80 (135)
32 PRK12370 invasion protein regu 36.0 56 0.0012 34.1 4.8 42 91-132 356-398 (553)
33 PRK12370 invasion protein regu 35.7 63 0.0014 33.8 5.1 41 91-131 322-363 (553)
34 TIGR02521 type_IV_pilW type IV 34.8 96 0.0021 25.5 5.1 46 89-134 81-127 (234)
35 PLN03088 SGT1, suppressor of 34.7 73 0.0016 31.8 5.2 40 92-131 55-95 (356)
36 cd00189 TPR Tetratricopeptide 34.4 1.1E+02 0.0024 20.4 4.6 41 92-132 53-94 (100)
37 PLN03088 SGT1, suppressor of 33.4 77 0.0017 31.6 5.1 40 92-131 21-61 (356)
38 PF13334 DUF4094: Domain of un 33.2 1E+02 0.0022 26.5 5.1 66 88-167 2-76 (95)
39 PF06738 DUF1212: Protein of u 26.2 86 0.0019 28.1 3.7 42 72-126 88-129 (193)
40 PF07156 Prenylcys_lyase: Pren 24.4 34 0.00074 35.0 0.9 21 32-56 11-31 (368)
41 TIGR00540 hemY_coli hemY prote 24.2 1.6E+02 0.0035 29.4 5.5 39 92-130 318-359 (409)
42 PRK11906 transcriptional regul 24.0 1.3E+02 0.0028 32.5 5.1 43 89-131 354-397 (458)
43 PF12688 TPR_5: Tetratrico pep 23.9 1.6E+02 0.0035 25.7 4.8 39 92-130 57-99 (120)
44 PRK11788 tetratricopeptide rep 23.7 1.8E+02 0.0039 27.5 5.5 43 92-134 54-97 (389)
45 PF11165 DUF2949: Protein of u 23.4 35 0.00076 27.4 0.6 11 34-44 36-46 (58)
46 TIGR02917 PEP_TPR_lipo putativ 23.4 1.5E+02 0.0032 30.0 5.0 40 92-132 789-829 (899)
47 PF09295 ChAPs: ChAPs (Chs5p-A 23.3 1.5E+02 0.0032 31.0 5.3 40 95-134 222-262 (395)
48 PF14561 TPR_20: Tetratricopep 21.0 3.1E+02 0.0068 22.7 5.8 46 92-137 7-53 (90)
49 TIGR00990 3a0801s09 mitochondr 20.4 1.7E+02 0.0038 30.6 5.1 41 92-132 418-459 (615)
50 PRK03381 PII uridylyl-transfer 20.1 66 0.0014 35.9 2.1 46 6-51 360-406 (774)
51 PF13887 MRF_C1: Myelin gene r 20.1 47 0.001 24.9 0.7 11 10-20 2-12 (36)
No 1
>KOG2159 consensus tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.4e-28 Score=246.65 Aligned_cols=187 Identities=24% Similarity=0.255 Sum_probs=170.4
Q ss_pred CcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHH-hhhhhhhhhhhHhhhhhcccccCCCchhHHHHHHhhcCcccC
Q 013719 2 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR-YNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVS 80 (437)
Q Consensus 2 ~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWR-fGLLeiLLPfQAAYl~~q~~~r~~~rSnMLL~Lf~nLDklva 80 (437)
++.+..+.++++.||.|||||||+||+|++||+|||| +|+..|++|.|++|...|++.++++++||++++|.||++.++
T Consensus 207 k~~~~~~~kIS~ERI~~Ei~kmL~g~~~~~~L~ll~~~~~~~~i~lp~~~s~~~f~~~~~~~~~s~~~~sl~~~l~~~~~ 286 (416)
T KOG2159|consen 207 KENVALLAKISRERIGVEINKMLVGNSAEASLRLLWRLFGFEYIFLPIEASLEEFQGFNRRDGFSNEPLSLLANLDKSLA 286 (416)
T ss_pred HHHHHHhccccHHHHHHHHHHHHcCCcHHHHHHHHHHhcCceEEeccchhhhhhccccccccccchhHHHHHhccccccc
Confidence 4567889999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHhhhCCCchHHHHHHHHHHhcCchHHhhHHHHhhcCCCCCCCccccCCCcccchH--HHHHH
Q 013719 81 CDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDE--QLAVK 158 (437)
Q Consensus 81 pdRPC~~sLWvglLAfH~ALV~~PqDplVV~aFasaly~G~w~eaVkfAr~~ak~~~~ffPEll~ps~~ksde--~L~ee 158 (437)
+++|||..+|+++++||.++.++|+.|+|+|+++++.+.. .+++.+.+.+.+++++++.++..+.....+. .+-..
T Consensus 287 ~~~~~~~~l~l~~~~~~~~~~~~~r~~~v~~~~~~~~~~~--~~~~~i~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 364 (416)
T KOG2159|consen 287 PDEPCHLRLKLSILELLKKFIDQPRFPTVPAVSSSAPLSK--LQDVEIPKKIEKDHDRLRQLLVSQEKNELDNETLLDWS 364 (416)
T ss_pred ccchhhhhHHHHHHhhhhHhhccccccceeeeecccchhh--hhhhhcccccccchHHHHHHhcchHhhhhHHHHHhhhc
Confidence 9999999999999999999999999999999999999887 8999999999999999999998887743322 23344
Q ss_pred HHHHHHHHHHHHHHhhc--------------cCCCcEEEehhhHHH
Q 013719 159 VTELALSVQDCVNDLTK--------------ASSGYVFVSKKIERN 190 (437)
Q Consensus 159 Vs~LAssVkdal~~mT~--------------p~SdLVFIp~~~~lr 190 (437)
+..+.+++++++..+|. |.+|+||++...+..
T Consensus 365 ~~~~~~~i~~~~~~~~~~~~~~g~llr~l~~~w~~~~~~~~~~~~l 410 (416)
T KOG2159|consen 365 VPDFPISINDLAIEGTSKGSIIGALLRYLQAPWSDSVFTSLKDSLL 410 (416)
T ss_pred cCchHHHHHHHHHhhcccchhHHHHHHhhhhhHHHHHhHHHHHHHh
Confidence 89999999999999994 468888888876653
No 2
>PRK11623 pcnB poly(A) polymerase I; Provisional
Probab=98.32 E-value=7.7e-07 Score=92.13 Aligned_cols=93 Identities=17% Similarity=0.303 Sum_probs=77.6
Q ss_pred CCcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHhhhhhcccccCCCchhHHHHHHhhcCcccC
Q 013719 1 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVS 80 (437)
Q Consensus 1 ~~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAAYl~~q~~~r~~~rSnMLL~Lf~nLDklva 80 (437)
|++++..+..+++.||..|++.||..|.+..++++|+.||||+.|+|..++++..+... ...+||...+.|.|+.++
T Consensus 238 I~~~a~lL~~vs~eRI~~El~KlL~~~~~~~~~~lL~e~GLl~~lfPel~~~~~~~~~~---~~~~~~~~~l~~tD~ri~ 314 (472)
T PRK11623 238 IPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDS---PMERIIEQVLKNTDTRIH 314 (472)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhHHHHhcccccc---HHHHHHHHHHHHHHHHHh
Confidence 34567788999999999999999999999999999999999999999999999754322 235799999999999999
Q ss_pred CCCCCC-chhHHHHHHH
Q 013719 81 CDRPAD-YTLWVGLLSF 96 (437)
Q Consensus 81 pdRPC~-~sLWvglLAf 96 (437)
.+.|.. ..|+.++|-.
T Consensus 315 ~~~~v~p~fl~a~llw~ 331 (472)
T PRK11623 315 NDMRVNPAFLFAAMFWY 331 (472)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 999864 4444555543
No 3
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=98.16 E-value=1.9e-06 Score=87.79 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=77.7
Q ss_pred CCcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHhhhhhcccccCCCchhHHHHHHhh-cCccc
Q 013719 1 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFN-LDKLV 79 (437)
Q Consensus 1 ~~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAAYl~~q~~~r~~~rSnMLL~Lf~n-LDklv 79 (437)
|++++..+..+++.||..|+..||..|.+..++++|+++|||+.++|-.+++|..... ....++...+.| .|+.+
T Consensus 193 I~~~a~~L~~vs~eRI~~El~Kll~~~~~~~~l~~L~~~gll~~lfPel~~~l~~~~~----~~~~~~~~~l~~~~d~r~ 268 (410)
T TIGR01942 193 IRESAPLLKGIPPARLFEEILKLLFSGRSAALFRMLCGYQLLEPLFPSVAYALRESPK----FESAFTVQALVNDTDFRV 268 (410)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhHHHHHhcCCc----hHHHHHHHHHHhhhHHHH
Confidence 3456677889999999999999999999999999999999999999999988775322 234467777888 99999
Q ss_pred CCCCCCCchhHHHHHHH
Q 013719 80 SCDRPADYTLWVGLLSF 96 (437)
Q Consensus 80 apdRPC~~sLWvglLAf 96 (437)
+.++||...+..++|-+
T Consensus 269 ~~~~~v~p~fl~a~ll~ 285 (410)
T TIGR01942 269 KRDKPVTPAFLYAALLW 285 (410)
T ss_pred hCCCCCCHHHHHHHHhH
Confidence 99999998877777766
No 4
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=97.94 E-value=6e-06 Score=61.78 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=45.5
Q ss_pred CcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHhhh
Q 013719 2 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL 53 (437)
Q Consensus 2 ~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAAYl 53 (437)
++.+..+..+.+.||..|++.||..+.+..++++|+.+|+++.++|-.+++|
T Consensus 13 ~~~~~~L~~is~ERi~~El~kil~~~~~~~~~~~l~~~gll~~ifP~l~~a~ 64 (64)
T PF12627_consen 13 KENAELLSKISKERIREELEKILSSPNPSRAFKLLDELGLLEYIFPELDAAL 64 (64)
T ss_dssp HHHGGGGGGS-HHHHHHHHHHHHTSTTHHHHHHHHHHTTCHHHHSTTHHT--
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHCccccccC
Confidence 4556688999999999999999999999999999999999999999987764
No 5
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=94.63 E-value=0.095 Score=54.31 Aligned_cols=46 Identities=24% Similarity=0.188 Sum_probs=42.2
Q ss_pred chhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHh
Q 013719 6 SSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 51 (437)
Q Consensus 6 sSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAA 51 (437)
..+..+.+.||..|++.+|..+.....+++|+.+|+|+.++|=-.+
T Consensus 167 ~~l~~~s~ERI~~El~k~L~~~~p~~~~~~L~~~g~L~~~~PEl~~ 212 (417)
T PRK13298 167 HELLYLTPERIWNETEKALKTDNPHVYFQVLYECNALKFLFPEIDF 212 (417)
T ss_pred hhhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhCcchHH
Confidence 5678899999999999999999999999999999999999996544
No 6
>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Probab=94.02 E-value=0.023 Score=56.71 Aligned_cols=52 Identities=25% Similarity=0.420 Sum_probs=46.0
Q ss_pred cccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHhhhh
Q 013719 3 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLD 54 (437)
Q Consensus 3 ~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAAYl~ 54 (437)
.....+..+...||..|+..||..+-+..++++|+.+|++++++|....++.
T Consensus 185 ~~~~~~~~is~ERi~~El~KlL~~~~~~~~l~~l~~~g~l~~l~p~~~~~~~ 236 (412)
T COG0617 185 LMAPLLAKISRERLWDELKKLLLSPNPREALQLLREYGALKILFPELDKLFG 236 (412)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChhhcChhHHHhhc
Confidence 3455666788999999999999999999999999999999999999998543
No 7
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=93.05 E-value=0.051 Score=55.12 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=41.3
Q ss_pred CcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhh
Q 013719 2 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 48 (437)
Q Consensus 2 ~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPf 48 (437)
++.+..+..+.+.||..|+++||..+.+..+|++|+++|+|.. +|.
T Consensus 182 ~~~~~~l~~vs~eRI~~El~kll~~~~~~~~l~~l~~~gll~~-~p~ 227 (394)
T PRK13299 182 KTQAPLLEKISVERIFVEFEKLLLGPFWRKGLKLLIETGLYNY-LPG 227 (394)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHCChHHh-Ccc
Confidence 3455677889999999999999999999999999999999999 785
No 8
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=90.42 E-value=1.4 Score=45.21 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=40.3
Q ss_pred hhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHh
Q 013719 7 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 51 (437)
Q Consensus 7 SV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAA 51 (437)
.+..+...||..|+.-+|..+.....+++|..+|+|..++|--++
T Consensus 168 ~L~~~~~ERi~~El~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~~ 212 (409)
T PRK10885 168 ELDALTPERVWKETERALMERNPQVFFQVLRDCGALAVLLPEIDA 212 (409)
T ss_pred hhhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHHHHhhHHHH
Confidence 455678899999999999999999999999999999999996544
No 9
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.81 E-value=2.4 Score=30.90 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-C-chHHhhHHHHh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-G-KWKEGVKFARD 131 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G-~w~eaVkfAr~ 131 (437)
-++..|.+|+..+|.++.+....|.+.+. | ++.+|++...+
T Consensus 21 ~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 21 EAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 48889999999999999999999988765 9 79999998775
No 10
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=80.75 E-value=0.97 Score=46.50 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=40.5
Q ss_pred cchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhH
Q 013719 5 SSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 50 (437)
Q Consensus 5 SsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQA 50 (437)
+..+..+.+.||..|+..+|..+.+...|++|+.+|+|..++|--+
T Consensus 199 ~~~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~glL~~~~Pe~~ 244 (466)
T TIGR02692 199 ADQIERISAERVRVELDKLLLGDHPRAGIDLMVETGLADRVLPEIP 244 (466)
T ss_pred HHHHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhhhhhhhcCchHH
Confidence 3456667889999999999999999999999999999999999643
No 11
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional
Probab=78.53 E-value=1.3 Score=45.58 Aligned_cols=45 Identities=20% Similarity=0.167 Sum_probs=40.6
Q ss_pred hhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHh
Q 013719 7 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 51 (437)
Q Consensus 7 SV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAA 51 (437)
.+..+.+.||.+|+.-+|........|.+|...|+|..++|--.+
T Consensus 177 ~l~~l~~ERI~~El~k~L~~~~p~~~l~~L~~~g~L~~l~Pel~~ 221 (364)
T PRK13297 177 EADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHD 221 (364)
T ss_pred ccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhCccccc
Confidence 466788999999999999999999999999999999999987543
No 12
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=77.97 E-value=2.6 Score=28.94 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=27.5
Q ss_pred HHHHhhhCCCchHHHHHHHHHHhc-CchHHhh
Q 013719 96 FHQALVSDPQDAFVVWVFASVLYH-GKWKEGV 126 (437)
Q Consensus 96 fH~ALV~~PqDplVV~aFasaly~-G~w~eaV 126 (437)
|-+|+..+|.|+.+---+|.+++. |++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 568999999999999999987764 9999986
No 13
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=77.54 E-value=5.8 Score=28.74 Aligned_cols=42 Identities=24% Similarity=0.570 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
-++-.|..++...|.++-+-...|.+++. |++.+|+...++.
T Consensus 15 ~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 15 EAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 36778999999999999999999988875 9999999887764
No 14
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=73.07 E-value=7.8 Score=28.40 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhc
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRA 133 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~a 133 (437)
++-++..++..+|.|+......|.+++. |++.+|+....+..
T Consensus 14 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 14 ALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4557889999999999999999988875 99999998877644
No 15
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional
Probab=72.70 E-value=3.2 Score=42.92 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=39.8
Q ss_pred chhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHhhhh
Q 013719 6 SSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLD 54 (437)
Q Consensus 6 sSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAAYl~ 54 (437)
..+..+.+.||..|++.+|+.. ...+++|..+|+|..++|--.+...
T Consensus 167 ~~L~~vs~ERI~~El~kiL~~p--~~~l~~L~~~glL~~lfPel~~~~~ 213 (360)
T PRK13296 167 GELNHLTRERLHIEFVKALNNP--KIFFTTLKELEALKIIFPNISCILP 213 (360)
T ss_pred hhhhcCCHHHHHHHHHHHHhCh--HHHHHHHHHcCCHHHhCcchHHHhc
Confidence 3577889999999999999843 4789999999999999998776443
No 16
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=62.97 E-value=20 Score=24.05 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhcC
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAK 134 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ak 134 (437)
-++-.|+.++...|.++.+....|.+++. |++.+|++...+...
T Consensus 18 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 18 EALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677889999999998777777766654 999999987665433
No 17
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=56.55 E-value=30 Score=24.92 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
|+-.|-.++..+|.++-+.-.+|-+++ .|++.+|..+..+...
T Consensus 10 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 10 AIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556788899999999999999997766 5999999998876443
No 18
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=54.38 E-value=23 Score=33.03 Aligned_cols=42 Identities=33% Similarity=0.494 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhc
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRA 133 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~a 133 (437)
++-.|..++..+|.|+.+....|.++|. |+|.+|+.+..+..
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 5556788899999999999999988886 99999999977643
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=53.11 E-value=17 Score=33.55 Aligned_cols=40 Identities=25% Similarity=0.460 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~ 131 (437)
|+-.|-+++..+|.||.+..++|-++.. |...+|+.+-++
T Consensus 233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 233 ALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 4455667888899999999999988874 999999987554
No 20
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=51.87 E-value=31 Score=29.72 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
++-.|..|+..+|.|+.+....|.++. .|+..+|+...++
T Consensus 77 A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 77 AINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666788899999999999988887665 5999999988775
No 21
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=51.39 E-value=15 Score=40.55 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHH-hhcCCCCC-CCccccC
Q 013719 88 TLWVGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFAR-DRAKEPVK-FVPEISG 145 (437)
Q Consensus 88 sLWvglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr-~~ak~~~~-ffPEll~ 145 (437)
-.=.+|-.|.+||+..|+|+.+.++.|.+... |++..||++-. .-+..|+. +.-|+++
T Consensus 470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 34458889999999999999999999988765 99999998754 36666666 5556665
No 22
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=50.61 E-value=31 Score=29.65 Aligned_cols=43 Identities=9% Similarity=0.161 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
++-.|+.|+..+|.++-+.-..|.++. .|++.+|+..-++-..
T Consensus 43 A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 43 AVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 677899999999999999999997776 4999999998776443
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=46.43 E-value=39 Score=32.30 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
++-+|..||..+|.++.+..-.|.++| .|++.+|++..++.
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a 158 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAF 158 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344667777777777766666665554 37777777665553
No 24
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=42.41 E-value=50 Score=30.21 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-c-Cch--HHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-H-GKW--KEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~-G~w--~eaVkfAr~ 131 (437)
|+-+|.+|+...|.|+-+...+|.++| . |.. .+|....++
T Consensus 92 A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 777888888888888877777776653 2 553 666666555
No 25
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=41.08 E-value=61 Score=26.06 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=14.5
Q ss_pred HHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHH
Q 013719 96 FHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFAR 130 (437)
Q Consensus 96 fH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr 130 (437)
|+.++..+|.++.+-...|-+.+ .|++.+|+++.+
T Consensus 74 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 74 YALAAALDPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444444444433333222 244444444443
No 26
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.89 E-value=38 Score=36.25 Aligned_cols=54 Identities=28% Similarity=0.374 Sum_probs=44.8
Q ss_pred cccCCCCCCCchhHHHHHHH---------------HHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 77 KLVSCDRPADYTLWVGLLSF---------------HQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 77 klvapdRPC~~sLWvglLAf---------------H~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
..-.+|.||- +.-=|++|| ..||..||-|.-.+-|.|-|+- .|+..||++|--+
T Consensus 165 p~wn~dlp~~-sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 165 PKWNADLPCY-SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred cccCCCCcHH-HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 4567899996 555678777 4699999999999999998884 6999999999654
No 27
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=40.81 E-value=70 Score=29.26 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=15.5
Q ss_pred HHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHH
Q 013719 98 QALVSDPQDAFVVWVFASVLY-HGKWKEGVKFAR 130 (437)
Q Consensus 98 ~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr 130 (437)
.||..+|.++.+-...|.+.+ .|++.+|+..-+
T Consensus 135 ~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 135 KALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344445555554444443333 255555554444
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=40.55 E-value=69 Score=26.37 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhcC
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAK 134 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ak 134 (437)
++-.|..++...|.++.+...++.+.+. |++.+|+...++...
T Consensus 154 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 154 AEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456777888888888887777777665 889998887776433
No 29
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=39.62 E-value=47 Score=25.44 Aligned_cols=40 Identities=18% Similarity=0.486 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhCCC--chHHHHHHHHHHhc-CchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQ--DAFVVWVFASVLYH-GKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~Pq--DplVV~aFasaly~-G~w~eaVkfAr~ 131 (437)
++..|-+.+...|. ++.+....|.++|. |++.+|+.+.++
T Consensus 8 Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 8 AIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66778888888885 45555556877775 999999999876
No 30
>PRK11189 lipoprotein NlpI; Provisional
Probab=38.99 E-value=60 Score=31.09 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 90 WVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 90 WvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
.-++..|..|+..+|.+|.+-...|.++. .|++.+|+...++-
T Consensus 81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34677899999999999998888887665 49999999876654
No 31
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=36.50 E-value=88 Score=25.13 Aligned_cols=44 Identities=16% Similarity=0.068 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcCC
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAKE 135 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak~ 135 (437)
++-.|..++..+|.++-+...+|...+ .|++.+|+...++..+.
T Consensus 36 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 36 ALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677788889999999999997776 49999999887775443
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=35.97 E-value=56 Score=34.14 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
-|+-+|.+||..+|.++.+-...|.++. .|++.+|+...++-
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3888999999999999998777776654 59999999887763
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=35.75 E-value=63 Score=33.80 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
-|+-++.+|+..+|.|+.+-.+.|.++. .|++.+|+...++
T Consensus 322 ~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 363 (553)
T PRK12370 322 KAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQ 363 (553)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4777899999999999999888887765 5999999998776
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=34.76 E-value=96 Score=25.53 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
.--++-.|..++...|.++.+...++.+++ .|++.+|++..++...
T Consensus 81 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 81 LEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 345777888899999999888888886665 4999999988777543
No 35
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=34.68 E-value=73 Score=31.76 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~ 131 (437)
|+-.+..||..+|.++.+-...|.+++. |++.+|+...++
T Consensus 55 Al~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 55 AVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3444556666666666665555555543 666666665554
No 36
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=34.44 E-value=1.1e+02 Score=20.41 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
++-.|..++...|.++.+....+.++. .|++.+|.+...+.
T Consensus 53 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 53 ALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455677888889999877777776654 49999998877654
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=33.45 E-value=77 Score=31.58 Aligned_cols=40 Identities=25% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
|+-.|..||..+|.++.+-...|.++. .|++.+|+..+++
T Consensus 21 Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~ 61 (356)
T PLN03088 21 AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666666666666665555554444 3666666666554
No 38
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=33.22 E-value=1e+02 Score=26.47 Aligned_cols=66 Identities=17% Similarity=0.318 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHhhhCCCchHHHHHHHHHHhc-Cc-h--HHhhHHHHhhcCCCCCCCccccCCCccc-----chHHHHHH
Q 013719 88 TLWVGLLSFHQALVSDPQDAFVVWVFASVLYH-GK-W--KEGVKFARDRAKEPVKFVPEISGFSEIE-----SDEQLAVK 158 (437)
Q Consensus 88 sLWvglLAfH~ALV~~PqDplVV~aFasaly~-G~-w--~eaVkfAr~~ak~~~~ffPEll~ps~~k-----sde~L~ee 158 (437)
.-|+.+|.+ +.|++-+|+ |+ | .++....+.....+......+.+.|+.+ .+.+++.+
T Consensus 2 ~kw~l~Lc~--------------~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~e 67 (95)
T PF13334_consen 2 RKWVLLLCI--------------ASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGE 67 (95)
T ss_pred chHHHHHHH--------------HHHHHHHHHhcccccCCccccchhhhccccccccccccccccccccccCCccchhHH
Confidence 457777665 678877776 43 5 3444444434444444444333333221 36778888
Q ss_pred HHHHHHHHH
Q 013719 159 VTELALSVQ 167 (437)
Q Consensus 159 Vs~LAssVk 167 (437)
|++--..|+
T Consensus 68 V~kTh~aIq 76 (95)
T PF13334_consen 68 VSKTHEAIQ 76 (95)
T ss_pred HHHHHHHHH
Confidence 888766665
No 39
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=26.16 E-value=86 Score=28.07 Aligned_cols=42 Identities=24% Similarity=0.563 Sum_probs=27.4
Q ss_pred HhhcCcccCCCCCCCchhHHHHHHHHHHhhhCCCchHHHHHHHHHHhcCchHHhh
Q 013719 72 FFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGV 126 (437)
Q Consensus 72 f~nLDklvapdRPC~~sLWvglLAfH~ALV~~PqDplVV~aFasaly~G~w~eaV 126 (437)
...||++.. +|-..+.|+-++++ .+.-++||.. ++|+|.+.+
T Consensus 88 ~~~L~~I~~--~~~~y~~~~~~l~~----------~l~~~~fa~l-fgg~~~~~~ 129 (193)
T PF06738_consen 88 IERLDEIDR--EPPRYPPWLVILAA----------GLASAAFALL-FGGSWIDMI 129 (193)
T ss_pred HHHHHHHhh--CCCCCCHHHHHHHH----------HHHHHHHHHH-HCCCHHHHH
Confidence 334444444 44346789999988 5666666655 889998865
No 40
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=24.37 E-value=34 Score=35.03 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=16.6
Q ss_pred HHHHHHHhhhhhhhhhhhHhhhhhc
Q 013719 32 SICLLRRYNLLKILLPFHAAYLDQQ 56 (437)
Q Consensus 32 SLRLLWRfGLLeiLLPfQAAYl~~q 56 (437)
.++||||||+ -|+.+-.+.+.
T Consensus 11 ~~kllWRYG~----sp~r~~~~v~~ 31 (368)
T PF07156_consen 11 ILKLLWRYGL----SPIRMQNLVKS 31 (368)
T ss_pred HHHHHHHcCC----cHHHHHHHHHH
Confidence 4899999995 48888777764
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=24.21 E-value=1.6e+02 Score=29.41 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhCCCch--HHHHHHHHHHhc-CchHHhhHHHH
Q 013719 92 GLLSFHQALVSDPQDA--FVVWVFASVLYH-GKWKEGVKFAR 130 (437)
Q Consensus 92 glLAfH~ALV~~PqDp--lVV~aFasaly~-G~w~eaVkfAr 130 (437)
.+-.+=++|...|.|| ....+.|-+.+. |+|.+|.+.-+
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3557778999999999 888899977764 99999998876
No 42
>PRK11906 transcriptional regulator; Provisional
Probab=24.02 E-value=1.3e+02 Score=32.52 Aligned_cols=43 Identities=21% Similarity=0.081 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHH-hcCchHHhhHHHHh
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVL-YHGKWKEGVKFARD 131 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasal-y~G~w~eaVkfAr~ 131 (437)
+=+|+..|-.|+..+|..|.+....|.++ +.|+..+|+....+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44578888899999999998888777655 56999999877665
No 43
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=23.91 E-value=1.6e+02 Score=25.71 Aligned_cols=39 Identities=33% Similarity=0.510 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhCCCchH--HHHHH-HHHHhc-CchHHhhHHHH
Q 013719 92 GLLSFHQALVSDPQDAF--VVWVF-ASVLYH-GKWKEGVKFAR 130 (437)
Q Consensus 92 glLAfH~ALV~~PqDpl--VV~aF-asaly~-G~w~eaVkfAr 130 (437)
++-.|..++..-|.|+. .+++| +.++++ |++.||+..+=
T Consensus 57 A~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 57 ALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66677888888788555 44455 466666 99999997643
No 44
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=23.70 E-value=1.8e+02 Score=27.52 Aligned_cols=43 Identities=12% Similarity=0.255 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
++-.|..++..+|.++.+....+.+.. .|++.+|+.+.++...
T Consensus 54 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 97 (389)
T PRK11788 54 AIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS 97 (389)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 888999999999999877777776554 5999999999876544
No 45
>PF11165 DUF2949: Protein of unknown function (DUF2949); InterPro: IPR021336 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=23.44 E-value=35 Score=27.40 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=9.0
Q ss_pred HHHHHhhhhhh
Q 013719 34 CLLRRYNLLKI 44 (437)
Q Consensus 34 RLLWRfGLLei 44 (437)
-+||+|||+.+
T Consensus 36 miLWqyGLItL 46 (58)
T PF11165_consen 36 MILWQYGLITL 46 (58)
T ss_pred hHHHHhccccH
Confidence 37999999875
No 46
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=23.40 E-value=1.5e+02 Score=30.04 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
++-.|..++..+|.|+.+.-.++.+... |+ .+|++.+++.
T Consensus 789 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 789 AIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 6777777777778777777777765543 66 7777777664
No 47
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=23.34 E-value=1.5e+02 Score=31.00 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=30.1
Q ss_pred HHHHHhhhCCCchHHHHHHHHHH-hcCchHHhhHHHHhhcC
Q 013719 95 SFHQALVSDPQDAFVVWVFASVL-YHGKWKEGVKFARDRAK 134 (437)
Q Consensus 95 AfH~ALV~~PqDplVV~aFasal-y~G~w~eaVkfAr~~ak 134 (437)
..|++|..+|+|+...-.-|-.+ ..|+.+.|+++|++-..
T Consensus 222 ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ 262 (395)
T PF09295_consen 222 LLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVE 262 (395)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35889999999977777767444 45888999988887543
No 48
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=21.02 E-value=3.1e+02 Score=22.68 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcCCCC
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAKEPV 137 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak~~~ 137 (437)
.+-++-.++..+|.|+-.-..+|.++. .|++.+|++..=.+-+..-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 355788899999999999988987665 5999999988776665543
No 49
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=20.42 E-value=1.7e+02 Score=30.63 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
++-.|.+||..+|.+..+...+|.+++. |++.+|+...++.
T Consensus 418 A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 418 AGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8889999999999998887777777764 9999999887763
No 50
>PRK03381 PII uridylyl-transferase; Provisional
Probab=20.08 E-value=66 Score=35.89 Aligned_cols=46 Identities=26% Similarity=0.202 Sum_probs=37.3
Q ss_pred chhhcccchhhHHHHHHHhhhcchh-hHHHHHHHhhhhhhhhhhhHh
Q 013719 6 SSIERLDKSRIMMELNYMLSYGAAE-SSICLLRRYNLLKILLPFHAA 51 (437)
Q Consensus 6 sSV~rLDK~RilMEmNYMLAYGSAE-aSLRLLWRfGLLeiLLPfQAA 51 (437)
..+......|+.-|+.-+|.++..- ..|++|.++|+|..++|--++
T Consensus 360 ~~l~~~~~eri~~ef~kiL~~~~~~~~~l~~m~~~GvL~~~iPE~~~ 406 (774)
T PRK03381 360 PPLPTPWPAEARDDLLVLLGAGPAAVAVIEALDRTGLWGRLLPEWEA 406 (774)
T ss_pred HhcCccccHHHHHHHHHHHcCCCchHHHHHHHHHhCCHHHhchhHHH
Confidence 3455555789999999999987654 589999999999999996543
No 51
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=20.07 E-value=47 Score=24.89 Aligned_cols=11 Identities=55% Similarity=0.755 Sum_probs=8.2
Q ss_pred cccchhhHHHH
Q 013719 10 RLDKSRIMMEL 20 (437)
Q Consensus 10 rLDK~RilMEm 20 (437)
-.||+||+||=
T Consensus 2 ~Vdk~rifmEn 12 (36)
T PF13887_consen 2 TVDKERIFMEN 12 (36)
T ss_pred cccHHHHHHHH
Confidence 35888888883
Done!