Query 013719
Match_columns 437
No_of_seqs 37 out of 39
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 15:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aql_A Poly(A) polymerase; tra 96.8 0.00049 1.7E-08 68.0 2.6 81 2-85 205-285 (415)
2 1ou5_A TRNA CCA-adding enzyme, 90.9 0.1 3.5E-06 52.1 2.7 48 2-49 238-286 (448)
3 3h38_A TRNA nucleotidyl transf 90.6 0.15 5.1E-06 51.2 3.5 43 6-48 207-249 (441)
4 1vfg_A A-adding enzyme, poly A 89.3 0.16 5.3E-06 49.3 2.4 42 7-48 183-224 (390)
5 1miw_A TRNA CCA-adding enzyme; 86.0 0.28 9.7E-06 48.1 2.0 45 3-48 182-226 (404)
6 2l6j_A TPR repeat-containing p 84.9 1.7 6E-05 30.7 5.3 47 88-134 19-66 (111)
7 4gcn_A Protein STI-1; structur 81.2 2.5 8.6E-05 32.6 5.3 42 91-132 26-68 (127)
8 4gco_A Protein STI-1; structur 80.7 2.7 9.1E-05 32.7 5.3 42 91-132 31-73 (126)
9 3ma5_A Tetratricopeptide repea 78.6 3.5 0.00012 30.4 5.1 44 89-132 23-67 (100)
10 3k9i_A BH0479 protein; putativ 78.5 3.7 0.00013 30.5 5.3 41 92-132 46-87 (117)
11 1hxi_A PEX5, peroxisome target 78.2 2.7 9.4E-05 32.3 4.6 41 92-132 70-111 (121)
12 2xcb_A PCRH, regulatory protei 78.1 3.5 0.00012 31.8 5.1 41 91-131 70-111 (142)
13 3upv_A Heat shock protein STI1 77.8 4 0.00014 30.2 5.3 41 91-131 22-63 (126)
14 2kck_A TPR repeat; tetratricop 77.7 4.7 0.00016 27.8 5.3 44 91-134 24-68 (112)
15 1na3_A Designed protein CTPR2; 77.3 5 0.00017 27.3 5.3 43 90-132 26-69 (91)
16 1elw_A TPR1-domain of HOP; HOP 76.7 5.1 0.00018 27.8 5.3 41 92-132 23-64 (118)
17 2kc7_A BFR218_protein; tetratr 76.7 5 0.00017 28.4 5.3 45 89-133 16-62 (99)
18 2vgx_A Chaperone SYCD; alterna 76.6 4 0.00014 32.4 5.3 40 92-131 40-80 (148)
19 2xcb_A PCRH, regulatory protei 76.1 4.5 0.00015 31.1 5.3 44 89-132 34-78 (142)
20 3q49_B STIP1 homology and U bo 74.6 5.6 0.00019 29.2 5.3 44 89-132 25-69 (137)
21 2vgx_A Chaperone SYCD; alterna 73.5 5.1 0.00017 31.8 5.1 42 91-132 73-115 (148)
22 2kat_A Uncharacterized protein 73.5 6.1 0.00021 28.9 5.2 39 93-131 5-44 (115)
23 3upv_A Heat shock protein STI1 72.9 6.5 0.00022 29.0 5.3 44 89-132 54-98 (126)
24 3sz7_A HSC70 cochaperone (SGT) 72.4 6 0.00021 30.8 5.2 44 89-132 27-71 (164)
25 3sz7_A HSC70 cochaperone (SGT) 72.1 6.3 0.00022 30.7 5.3 45 89-133 61-106 (164)
26 2lni_A Stress-induced-phosphop 72.0 7.7 0.00026 27.7 5.3 41 92-132 35-76 (133)
27 3gyz_A Chaperone protein IPGC; 71.5 6 0.00021 32.5 5.3 39 92-130 55-94 (151)
28 3gyz_A Chaperone protein IPGC; 71.3 7.1 0.00024 32.1 5.6 41 92-132 89-130 (151)
29 1hxi_A PEX5, peroxisome target 71.3 6.8 0.00023 30.0 5.2 45 88-132 32-77 (121)
30 3vtx_A MAMA; tetratricopeptide 71.0 6.9 0.00024 30.5 5.3 40 92-131 126-166 (184)
31 1na0_A Designed protein CTPR3; 70.7 8.7 0.0003 26.8 5.3 42 91-132 61-103 (125)
32 3q49_B STIP1 homology and U bo 70.2 8.2 0.00028 28.3 5.3 42 91-132 61-103 (137)
33 2vyi_A SGTA protein; chaperone 70.2 9 0.00031 26.9 5.3 41 92-132 31-72 (131)
34 2dba_A Smooth muscle cell asso 70.0 8.3 0.00028 28.2 5.2 42 91-132 83-125 (148)
35 1elr_A TPR2A-domain of HOP; HO 69.2 9.6 0.00033 26.9 5.3 45 88-132 19-64 (131)
36 2lni_A Stress-induced-phosphop 68.8 9.6 0.00033 27.2 5.3 43 91-133 68-111 (133)
37 2vyi_A SGTA protein; chaperone 67.8 11 0.00037 26.5 5.3 42 91-132 64-106 (131)
38 2kat_A Uncharacterized protein 67.4 10 0.00035 27.7 5.3 44 89-132 35-79 (115)
39 4ga2_A E3 SUMO-protein ligase 67.4 8.9 0.0003 30.3 5.3 43 90-132 48-91 (150)
40 3rkv_A Putative peptidylprolyl 67.3 9.1 0.00031 29.7 5.2 42 91-132 81-123 (162)
41 3vtx_A MAMA; tetratricopeptide 67.1 9.4 0.00032 29.7 5.3 41 92-132 24-65 (184)
42 1na0_A Designed protein CTPR3; 66.9 12 0.0004 26.1 5.3 43 91-133 27-70 (125)
43 2r5s_A Uncharacterized protein 65.3 10 0.00034 30.1 5.2 44 92-135 93-137 (176)
44 1elw_A TPR1-domain of HOP; HOP 64.7 14 0.00047 25.5 5.3 44 91-134 56-100 (118)
45 3urz_A Uncharacterized protein 64.2 10 0.00036 31.2 5.3 45 89-133 70-115 (208)
46 1a17_A Serine/threonine protei 63.8 13 0.00043 27.8 5.2 40 92-131 32-72 (166)
47 4gco_A Protein STI-1; structur 63.0 13 0.00043 28.8 5.3 44 89-132 63-107 (126)
48 1a17_A Serine/threonine protei 60.6 16 0.00054 27.3 5.3 43 91-133 65-108 (166)
49 2pl2_A Hypothetical conserved 59.8 14 0.00047 30.7 5.3 43 91-133 102-145 (217)
50 2fo7_A Synthetic consensus TPR 59.3 21 0.00073 24.8 5.4 39 92-130 88-127 (136)
51 2fo7_A Synthetic consensus TPR 57.5 22 0.00075 24.7 5.3 42 91-132 19-61 (136)
52 2xev_A YBGF; tetratricopeptide 56.7 21 0.00072 25.8 5.2 43 92-134 58-104 (129)
53 2pl2_A Hypothetical conserved 56.6 16 0.00055 30.3 5.1 43 91-133 23-66 (217)
54 2kck_A TPR repeat; tetratricop 56.4 32 0.0011 23.5 5.9 45 91-135 58-106 (112)
55 2xev_A YBGF; tetratricopeptide 56.1 21 0.00072 25.8 5.1 43 91-133 20-66 (129)
56 3as5_A MAMA; tetratricopeptide 56.1 21 0.00072 26.5 5.3 39 92-130 61-100 (186)
57 3as5_A MAMA; tetratricopeptide 55.9 21 0.00073 26.5 5.3 40 92-131 95-135 (186)
58 2e2e_A Formate-dependent nitri 54.5 21 0.00073 27.7 5.3 43 91-133 99-142 (177)
59 1xnf_A Lipoprotein NLPI; TPR, 54.0 21 0.00072 28.9 5.3 43 91-133 61-104 (275)
60 4i17_A Hypothetical protein; T 53.1 22 0.00074 28.8 5.2 43 91-133 60-103 (228)
61 3k9i_A BH0479 protein; putativ 51.9 7.7 0.00026 28.8 2.3 42 92-133 9-54 (117)
62 2dba_A Smooth muscle cell asso 51.9 26 0.00088 25.5 5.1 43 91-133 46-92 (148)
63 3uq3_A Heat shock protein STI1 51.2 25 0.00086 27.9 5.3 40 92-131 158-198 (258)
64 3bee_A Putative YFRE protein; 50.9 38 0.0013 25.9 6.1 46 89-134 25-71 (93)
65 2fbn_A 70 kDa peptidylprolyl i 50.5 25 0.00086 28.1 5.2 44 89-132 104-148 (198)
66 1hh8_A P67PHOX, NCF-2, neutrop 50.0 27 0.00092 27.6 5.3 43 91-133 55-98 (213)
67 2c2l_A CHIP, carboxy terminus 49.9 23 0.00078 31.0 5.2 44 91-134 22-66 (281)
68 4ga2_A E3 SUMO-protein ligase 49.8 9.5 0.00032 30.1 2.6 38 91-128 83-121 (150)
69 2e2e_A Formate-dependent nitri 48.8 16 0.00056 28.4 3.8 41 92-132 29-70 (177)
70 2r5s_A Uncharacterized protein 48.3 8.9 0.00031 30.4 2.2 43 90-132 23-66 (176)
71 1xnf_A Lipoprotein NLPI; TPR, 47.8 28 0.00097 28.1 5.1 43 91-133 95-138 (275)
72 2fbn_A 70 kDa peptidylprolyl i 47.5 29 0.001 27.8 5.2 45 90-134 55-116 (198)
73 3mkr_A Coatomer subunit epsilo 47.3 26 0.00089 31.0 5.2 40 93-132 186-226 (291)
74 1elr_A TPR2A-domain of HOP; HO 47.1 17 0.00059 25.5 3.4 43 91-133 56-106 (131)
75 3uq3_A Heat shock protein STI1 47.1 32 0.0011 27.3 5.3 41 92-132 192-233 (258)
76 4i17_A Hypothetical protein; T 46.6 31 0.0011 27.8 5.2 44 90-133 24-69 (228)
77 3u4t_A TPR repeat-containing p 46.4 28 0.00096 28.3 4.9 44 91-134 92-136 (272)
78 3ieg_A DNAJ homolog subfamily 45.3 33 0.0011 28.5 5.3 42 92-133 56-98 (359)
79 2vq2_A PILW, putative fimbrial 45.2 36 0.0012 26.3 5.2 37 95-131 135-172 (225)
80 2ho1_A Type 4 fimbrial biogene 44.1 37 0.0013 27.4 5.3 46 89-134 87-133 (252)
81 3urz_A Uncharacterized protein 44.0 22 0.00075 29.2 4.0 46 88-133 19-81 (208)
82 2vq2_A PILW, putative fimbrial 43.3 41 0.0014 26.0 5.3 42 91-132 26-68 (225)
83 2q7f_A YRRB protein; TPR, prot 43.1 40 0.0014 26.6 5.3 44 89-132 73-117 (243)
84 2c2l_A CHIP, carboxy terminus 42.5 31 0.0011 30.1 5.0 41 91-131 56-97 (281)
85 3rkv_A Putative peptidylprolyl 42.3 24 0.0008 27.4 3.7 45 89-133 27-90 (162)
86 3qou_A Protein YBBN; thioredox 42.0 37 0.0013 29.6 5.3 43 92-134 204-247 (287)
87 3hym_B Cell division cycle pro 41.7 40 0.0014 27.9 5.2 43 92-134 144-187 (330)
88 1zu2_A Mitochondrial import re 41.4 29 0.001 30.3 4.6 43 89-131 62-116 (158)
89 2q7f_A YRRB protein; TPR, prot 41.3 41 0.0014 26.6 5.0 40 92-131 110-150 (243)
90 1w3b_A UDP-N-acetylglucosamine 41.0 38 0.0013 29.5 5.3 41 90-130 186-227 (388)
91 2ho1_A Type 4 fimbrial biogene 40.6 44 0.0015 26.9 5.2 40 92-131 124-166 (252)
92 3hym_B Cell division cycle pro 40.2 37 0.0013 28.0 4.8 42 92-133 255-297 (330)
93 3qou_A Protein YBBN; thioredox 38.9 36 0.0012 29.7 4.8 41 92-132 136-177 (287)
94 2xpi_A Anaphase-promoting comp 38.4 40 0.0014 31.1 5.2 41 92-132 535-576 (597)
95 4eqf_A PEX5-related protein; a 38.3 46 0.0016 28.7 5.3 42 92-133 84-126 (365)
96 3cv0_A Peroxisome targeting si 37.9 51 0.0017 27.2 5.3 40 92-131 191-231 (327)
97 3ieg_A DNAJ homolog subfamily 37.8 50 0.0017 27.4 5.3 42 92-133 291-333 (359)
98 3u4t_A TPR repeat-containing p 37.8 35 0.0012 27.7 4.2 47 88-134 18-65 (272)
99 2h6f_A Protein farnesyltransfe 37.3 33 0.0011 32.4 4.6 40 92-131 185-225 (382)
100 4eqf_A PEX5-related protein; a 36.8 50 0.0017 28.4 5.3 40 92-131 196-238 (365)
101 3cv0_A Peroxisome targeting si 36.5 54 0.0018 27.0 5.2 42 92-133 157-199 (327)
102 1fch_A Peroxisomal targeting s 35.4 56 0.0019 27.8 5.3 41 92-132 236-277 (368)
103 3qky_A Outer membrane assembly 35.0 50 0.0017 27.4 4.8 46 88-133 112-175 (261)
104 2if4_A ATFKBP42; FKBP-like, al 34.9 55 0.0019 29.6 5.4 44 90-133 247-291 (338)
105 3ma5_A Tetratricopeptide repea 34.8 34 0.0012 25.0 3.4 31 102-132 2-33 (100)
106 3qky_A Outer membrane assembly 34.7 61 0.0021 26.9 5.3 47 88-134 30-80 (261)
107 1p5q_A FKBP52, FK506-binding p 34.2 53 0.0018 29.6 5.3 41 92-132 215-256 (336)
108 1fch_A Peroxisomal targeting s 33.7 61 0.0021 27.5 5.2 40 92-131 83-123 (368)
109 2y4t_A DNAJ homolog subfamily 33.5 59 0.002 28.6 5.3 41 92-132 79-120 (450)
110 1w3b_A UDP-N-acetylglucosamine 33.3 64 0.0022 28.1 5.4 40 92-131 256-296 (388)
111 2y4t_A DNAJ homolog subfamily 30.8 69 0.0024 28.2 5.3 42 91-132 275-321 (450)
112 3fp2_A TPR repeat-containing p 30.8 51 0.0018 29.7 4.5 43 92-134 78-121 (537)
113 2h6f_A Protein farnesyltransfe 30.4 50 0.0017 31.1 4.6 40 92-131 151-191 (382)
114 1hh8_A P67PHOX, NCF-2, neutrop 29.9 80 0.0027 24.8 5.0 43 92-134 90-149 (213)
115 2xpi_A Anaphase-promoting comp 28.7 75 0.0026 29.3 5.3 40 92-131 426-466 (597)
116 1kt0_A FKBP51, 51 kDa FK506-bi 27.8 73 0.0025 30.2 5.2 44 91-134 335-379 (457)
117 3fp2_A TPR repeat-containing p 27.8 81 0.0028 28.4 5.3 42 92-133 447-489 (537)
118 2hr2_A Hypothetical protein; a 27.8 81 0.0028 27.5 5.1 40 92-131 76-127 (159)
119 4abn_A Tetratricopeptide repea 27.4 76 0.0026 30.0 5.3 44 91-134 121-165 (474)
120 2gw1_A Mitochondrial precursor 26.9 88 0.003 27.8 5.2 43 91-133 57-100 (514)
121 1wao_1 Serine/threonine protei 26.8 77 0.0026 30.5 5.2 40 92-131 93-135 (477)
122 3mkr_A Coatomer subunit epsilo 26.6 1E+02 0.0035 27.1 5.6 39 92-130 219-259 (291)
123 1ihg_A Cyclophilin 40; ppiase 25.9 84 0.0029 29.2 5.2 42 91-132 291-333 (370)
124 1wao_1 Serine/threonine protei 25.8 83 0.0028 30.2 5.3 41 92-132 59-100 (477)
125 2vsy_A XCC0866; transferase, g 25.1 86 0.0029 29.8 5.1 41 92-132 76-117 (568)
126 4a1s_A PINS, partner of inscut 24.7 1.1E+02 0.0037 26.6 5.3 43 89-131 64-111 (411)
127 1of8_A Phospho-2-dehydro-3-deo 24.4 58 0.002 32.7 4.0 69 30-98 135-217 (370)
128 4gyw_A UDP-N-acetylglucosamine 24.3 82 0.0028 32.8 5.2 40 92-131 62-102 (723)
129 4gyw_A UDP-N-acetylglucosamine 24.2 83 0.0028 32.7 5.3 40 92-131 96-136 (723)
130 3ro2_A PINS homolog, G-protein 23.8 1.3E+02 0.0045 24.4 5.3 41 91-131 23-68 (338)
131 2gw1_A Mitochondrial precursor 23.7 1.1E+02 0.0038 27.1 5.3 45 89-133 431-476 (514)
132 2yhc_A BAMD, UPF0169 lipoprote 23.5 1.2E+02 0.004 25.0 5.1 43 92-134 23-69 (225)
133 2vsy_A XCC0866; transferase, g 23.3 1E+02 0.0035 29.3 5.3 41 92-132 110-154 (568)
134 1p5q_A FKBP52, FK506-binding p 22.2 1.2E+02 0.004 27.3 5.2 44 90-133 164-223 (336)
135 3edt_B KLC 2, kinesin light ch 21.9 92 0.0031 24.8 4.0 41 92-132 146-195 (283)
136 2ond_A Cleavage stimulation fa 21.8 1.5E+02 0.0051 25.6 5.6 34 98-131 194-228 (308)
137 4abn_A Tetratricopeptide repea 21.3 1E+02 0.0035 29.2 4.8 41 92-132 240-284 (474)
138 3utn_X Thiosulfate sulfurtrans 20.7 38 0.0013 32.4 1.8 49 68-126 261-314 (327)
No 1
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=96.78 E-value=0.00049 Score=68.03 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=58.6
Q ss_pred CcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhhhHhhhhhcccccCCCchhHHHHHHhhcCcccCC
Q 013719 2 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSC 81 (437)
Q Consensus 2 ~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPfQAAYl~~q~~~r~~~rSnMLL~Lf~nLDklvap 81 (437)
++.+..+..+...||..|++.||..+.+...|++|.++|||..++|--++.+... .....-.++...+.++|+.+..
T Consensus 205 ~~~~~~l~~is~eRi~~E~~kiL~~~~~~~~l~~l~~~GlL~~~lPe~~~i~~~~---q~~h~~~v~~h~L~~~d~~i~~ 281 (415)
T 3aql_A 205 PRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTEN---GDSPMERIIEQVLKNTDTRIHN 281 (415)
T ss_dssp HHHGGGGGGSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTCSTTTCHHHHTTCCSS---SCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhcCChHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHhchhHHHHhccC---CcchHHHHHHHHHHHHHHHHhc
Confidence 3445667778899999999999999999999999999999999999888775421 1111234455555556655444
Q ss_pred CCCC
Q 013719 82 DRPA 85 (437)
Q Consensus 82 dRPC 85 (437)
+.|.
T Consensus 282 ~~~~ 285 (415)
T 3aql_A 282 DMRV 285 (415)
T ss_dssp TCCC
T ss_pred CCCC
Confidence 4443
No 2
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4
Probab=90.91 E-value=0.1 Score=52.10 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=42.7
Q ss_pred CcccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhh-hhhh
Q 013719 2 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL-LPFH 49 (437)
Q Consensus 2 ~~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiL-LPfQ 49 (437)
++.+..+..+...||..|++.+|..+.....|++|+.+|+|..+ +|--
T Consensus 238 ~~~~~~L~~is~ERi~~El~kiL~~~~~~~~l~~L~~~GlL~~i~lPe~ 286 (448)
T 1ou5_A 238 AENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPAN 286 (448)
T ss_dssp HHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHHHTTCGGGGTCCCC
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHCCCceEecCcch
Confidence 34456677889999999999999999999999999999999999 9954
No 3
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=90.56 E-value=0.15 Score=51.16 Aligned_cols=43 Identities=26% Similarity=0.371 Sum_probs=39.7
Q ss_pred chhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhh
Q 013719 6 SSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 48 (437)
Q Consensus 6 sSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPf 48 (437)
..+..+...||.+|++.||..+.+..+|++|+.+|+|..++|-
T Consensus 207 ~~l~~is~eRi~~El~kll~~~~~~~~l~~l~~~glL~~i~Pe 249 (441)
T 3h38_A 207 GYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPK 249 (441)
T ss_dssp THHHHSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTHHHHHSTT
T ss_pred chhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHhCcc
Confidence 4566788999999999999999999999999999999999995
No 4
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=89.29 E-value=0.16 Score=49.34 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=39.0
Q ss_pred hhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhh
Q 013719 7 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 48 (437)
Q Consensus 7 SV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPf 48 (437)
.+..+...||..|+..+|..+.....|++|+++|+|..++|-
T Consensus 183 ~l~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~glL~~~lPe 224 (390)
T 1vfg_A 183 LLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEG 224 (390)
T ss_dssp GGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHHHSTT
T ss_pred hhhccCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHh
Confidence 466788999999999999999999999999999999999995
No 5
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=86.01 E-value=0.28 Score=48.10 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=39.4
Q ss_pred cccchhhcccchhhHHHHHHHhhhcchhhHHHHHHHhhhhhhhhhh
Q 013719 3 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 48 (437)
Q Consensus 3 ~LSsSV~rLDK~RilMEmNYMLAYGSAEaSLRLLWRfGLLeiLLPf 48 (437)
+.+..+..+...||..|++.||..+.....|++|+++|+|.. ||-
T Consensus 182 ~~~~~l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll~~-lPe 226 (404)
T 1miw_A 182 QNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAY-LPG 226 (404)
T ss_dssp HHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTTS-STT
T ss_pred HHHhhhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhh-Ccc
Confidence 345567778899999999999999999999999999999998 574
No 6
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=84.88 E-value=1.7 Score=30.67 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 88 TLWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 88 sLWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
..--++-.|.+|+..+|.++.+....|.+++ .|++.+|++..++-..
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 19 LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3455788999999999999999888887775 4999999998877443
No 7
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=81.21 E-value=2.5 Score=32.64 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
-|+-.|.+||..+|.++.+..-.|.+.+. |++.+|++..++-
T Consensus 26 ~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 26 KAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 47889999999999999888888877764 9999999887653
No 8
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=80.68 E-value=2.7 Score=32.67 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
-++-.|.+||..+|.++.+..-.|.+++. |++.+|++..++-
T Consensus 31 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 31 TAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 47778888888888888888777777654 8888888876653
No 9
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=78.60 E-value=3.5 Score=30.39 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
.--++-.|-.|+..+|.++.+....|.+.+ .|++.+|++..++-
T Consensus 23 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 23 ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344788999999999999998888887665 49999999887753
No 10
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=78.47 E-value=3.7 Score=30.54 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
++-.|.+|+...|.++.+....|.+++. |++.+|+...++.
T Consensus 46 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 46 AEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6778899999999999988888877765 9999999887653
No 11
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=78.24 E-value=2.7 Score=32.27 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
++-+|.+|+..+|.++.+...+|.++.. |++.+|+...++.
T Consensus 70 A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 70 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5667778888888888777777766654 8888888776654
No 12
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=78.10 E-value=3.5 Score=31.76 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARD 131 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~ 131 (437)
-++-.|..|+..+|.+|.+....|.+++. |++.+|++..++
T Consensus 70 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 70 QALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 37778899999999999998888877754 999999988765
No 13
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=77.84 E-value=4 Score=30.16 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
-++-.|.+|+..+|.++.+....|.+.+ .|++.+|+...++
T Consensus 22 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (126)
T 3upv_A 22 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3566667777777777766666665554 3777777766554
No 14
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=77.75 E-value=4.7 Score=27.81 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
-++-.|.+|+...|.++.+....|.+++ .|++.+|++..++...
T Consensus 24 ~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 24 ESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4777888999999999888877786665 4999999988776443
No 15
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=77.29 E-value=5 Score=27.32 Aligned_cols=43 Identities=19% Similarity=0.402 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 90 WVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 90 WvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
=-++-.|.+|+...|.++.+....|.+++ .|++.+|++..++.
T Consensus 26 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34777899999999999998888887765 49999999887764
No 16
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=76.74 E-value=5.1 Score=27.79 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
++-.|..++...|.++.+....|.+.+ .|++.+|+...++.
T Consensus 23 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 23 ALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 455667777777777776666665554 37777777766653
No 17
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=76.68 E-value=5 Score=28.36 Aligned_cols=45 Identities=11% Similarity=0.293 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhhhCCCchH-HHHHHHHHHhc-CchHHhhHHHHhhc
Q 013719 89 LWVGLLSFHQALVSDPQDAF-VVWVFASVLYH-GKWKEGVKFARDRA 133 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDpl-VV~aFasaly~-G~w~eaVkfAr~~a 133 (437)
.--++-.|..|+..+|.++. +....|.+.+. |++.+|++..++..
T Consensus 16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44578899999999999998 77777766654 99999999877643
No 18
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=76.61 E-value=4 Score=32.42 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=19.5
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~ 131 (437)
++-.|..|+..+|.++.+....|.+++. |++.+|++..++
T Consensus 40 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 40 AHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444555555555555555444444432 555555544443
No 19
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=76.10 E-value=4.5 Score=31.14 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
+=-++-.|..++..+|.++.+....|.+++. |++.+|+...++-
T Consensus 34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4457788999999999999999988877764 9999999987763
No 20
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=74.60 E-value=5.6 Score=29.21 Aligned_cols=44 Identities=11% Similarity=-0.018 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
+--++-.|..|+..+|.++.+....|.+++ .|++.+|++..++.
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (137)
T 3q49_B 25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 69 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344666777777777777766666665554 47777777666553
No 21
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=73.50 E-value=5.1 Score=31.83 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
-++-+|..|+..+|.+|.+....|.+++. |++.+|++..++-
T Consensus 73 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 37778999999999999999888877764 9999999887753
No 22
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=73.45 E-value=6.1 Score=28.91 Aligned_cols=39 Identities=8% Similarity=0.220 Sum_probs=23.2
Q ss_pred HHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 93 LLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 93 lLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
+-.|..|+..+|.++.+....|.+.+ .|++.+|++..++
T Consensus 5 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 44 (115)
T 2kat_A 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRA 44 (115)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 34556666666666666555554443 3666666666554
No 23
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=72.87 E-value=6.5 Score=29.02 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
.=-++-.|.+|+..+|.++.+....|.+++. |++.+|+...++.
T Consensus 54 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 54 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 3347889999999999999988888877764 9999999886653
No 24
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=72.40 E-value=6 Score=30.82 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
.--++-.|.+|+..+|.++.+....|.+++ .|++.+|+...++-
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 445677788888888888877777776665 38888888776653
No 25
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=72.06 E-value=6.3 Score=30.70 Aligned_cols=45 Identities=11% Similarity=-0.027 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhc
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRA 133 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~a 133 (437)
+--++-.|.+||..+|.++.+....|.+++. |++.+|++..++..
T Consensus 61 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 61 HEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3458889999999999999999999977765 99999999877643
No 26
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=71.95 E-value=7.7 Score=27.72 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
++-.|..|+...|.++.+....|.+.+. |++.+|++..++.
T Consensus 35 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 76 (133)
T 2lni_A 35 AMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 76 (133)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5667778888888887776666665543 8888888776653
No 27
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=71.51 E-value=6 Score=32.51 Aligned_cols=39 Identities=8% Similarity=0.065 Sum_probs=19.7
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHH
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFAR 130 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr 130 (437)
++-.|..|+..+|.+|.+....|.+++. |++.+|+..-+
T Consensus 55 A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~ 94 (151)
T 3gyz_A 55 AEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94 (151)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 4445555555555555555445544432 55555555433
No 28
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=71.30 E-value=7.1 Score=32.08 Aligned_cols=41 Identities=7% Similarity=-0.131 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
++-+|.+|+..+|.+|.+....|.++.. |++.+|+...++-
T Consensus 89 Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7888999999999999998888877764 9999999987763
No 29
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=71.27 E-value=6.8 Score=30.02 Aligned_cols=45 Identities=11% Similarity=0.000 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 88 TLWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 88 sLWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
.+--++-.|..|+..+|.++.+....|.++. .|++.+|+...++.
T Consensus 32 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 77 (121)
T 1hxi_A 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77 (121)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556888999999999999998888887765 59999999987763
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=71.04 E-value=6.9 Score=30.50 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~ 131 (437)
|+-.|.+++..+|.++.+-...|.+++. |++.+|++.-++
T Consensus 126 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 126 AIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555555555555555555544432 555555555443
No 31
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=70.72 E-value=8.7 Score=26.75 Aligned_cols=42 Identities=19% Similarity=0.453 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
-++-.|..++...|.++.+...++.+.+ .|++.+|+...++.
T Consensus 61 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3667888899999999988888886665 49999999887754
No 32
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=70.18 E-value=8.2 Score=28.31 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
-++-.|..|+..+|.++.+....|.+++ .|++.+|+...++.
T Consensus 61 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 61 QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4777899999999999999888887775 49999999887753
No 33
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=70.18 E-value=9 Score=26.93 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
++-.|..++...|.++.+....|.+.+ .|++.+|++..++.
T Consensus 31 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 31 AVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 555677777777777776666665554 47788887776653
No 34
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.01 E-value=8.3 Score=28.22 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
-++-.|.+++...|.++.+....|.+++. |++.+|++..++.
T Consensus 83 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 83 KAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46777888888899998888888876654 9999998887654
No 35
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=69.24 E-value=9.6 Score=26.90 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 88 TLWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 88 sLWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
..--++-.|..|+...|.++.+....|.+.+ .|++.+|+...++.
T Consensus 19 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3445778899999999999988888886665 49999999887764
No 36
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=68.83 E-value=9.6 Score=27.20 Aligned_cols=43 Identities=9% Similarity=0.028 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
-++-.|.+|+...|.++.+...+|.+.+ .|++.+|++..++..
T Consensus 68 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 68 LALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4677889999999999999888887765 499999999877643
No 37
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=67.81 E-value=11 Score=26.51 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
-++-.|..++...|.++.+....|.+.+ .|++.+|++..++.
T Consensus 64 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3677889999999999988888886665 49999999987764
No 38
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=67.44 E-value=10 Score=27.70 Aligned_cols=44 Identities=16% Similarity=0.067 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
.=-++-.|..|+...|.++.+...+|.++. .|++.+|+...++.
T Consensus 35 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 35 FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334788899999999999998888886665 49999999887653
No 39
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=67.40 E-value=8.9 Score=30.25 Aligned_cols=43 Identities=7% Similarity=-0.071 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 90 WVGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 90 WvglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
=-|+-.|.+||..+|.++.+-...|.+... |++.+|+...++.
T Consensus 48 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 48 DLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 346777888888888888877777766653 8888888776653
No 40
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=67.28 E-value=9.1 Score=29.74 Aligned_cols=42 Identities=10% Similarity=-0.085 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
-++-.|..||..+|.++-+....|.+++. |++.+|+...++-
T Consensus 81 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 81 EAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 47888999999999999998888877765 9999999887653
No 41
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=67.11 E-value=9.4 Score=29.74 Aligned_cols=41 Identities=10% Similarity=0.227 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
|+-.|-+||..+|.++.+....|.+.+ .|++.+|++...+.
T Consensus 24 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 24 AIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677899999999999998888887765 49999999887764
No 42
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=66.91 E-value=12 Score=26.09 Aligned_cols=43 Identities=19% Similarity=0.433 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
-++-.|..++...|.++.+....|.+.+ .|++.+|+++.++..
T Consensus 27 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3566788889999999888777776665 499999999877643
No 43
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=65.35 E-value=10 Score=30.13 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcCC
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAKE 135 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak~ 135 (437)
++-.|..|+..+|.++.+....|.++. .|++.+|+...++....
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 466888999999999999999997776 49999999998875443
No 44
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=64.66 E-value=14 Score=25.53 Aligned_cols=44 Identities=11% Similarity=-0.053 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
-++-.|..++...|.++.+...+|.+.+ .|++.+|++..++...
T Consensus 56 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 56 KAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3677888999999999998888887765 4999999998876543
No 45
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=64.17 E-value=10 Score=31.20 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhc
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRA 133 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~a 133 (437)
+=-++-.|.+||..+|.++.+....|.+++. |++.+|+...++..
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4458889999999999999999999977764 99999999877643
No 46
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=63.81 E-value=13 Score=27.81 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
++-.|..|+...|.++.+....|.+.+ .|++.+|++..++
T Consensus 32 A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 72 (166)
T 1a17_A 32 AIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72 (166)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555556665555555554443 3666666555444
No 47
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=63.03 E-value=13 Score=28.81 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
.--++-.|.+||..+|.++.+....|.+++. |++.+|++.-++.
T Consensus 63 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 63 FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3458889999999999999988888877765 9999999987764
No 48
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=60.63 E-value=16 Score=27.25 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
-++-.|.+|+...|.++.+....|.+++ .|++.+|+...++..
T Consensus 65 ~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 65 YALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV 108 (166)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4677899999999999998888887765 499999998877643
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=59.76 E-value=14 Score=30.68 Aligned_cols=43 Identities=14% Similarity=0.027 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~a 133 (437)
-++-.|-+|+..+|.++.+....|.+++. |++.+|+...++-.
T Consensus 102 ~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 102 QALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 36678889999999999988888877764 99999998877643
No 50
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=59.29 E-value=21 Score=24.78 Aligned_cols=39 Identities=21% Similarity=0.491 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHH
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFAR 130 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr 130 (437)
++-.|..++...|.++.+....+.+.+. |++.+|++..+
T Consensus 88 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3344455555555555444444433332 55555555443
No 51
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=57.47 E-value=22 Score=24.72 Aligned_cols=42 Identities=19% Similarity=0.445 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
-++-.|..++...|.++.+....+.+.+ .|++.+|++..++.
T Consensus 19 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 61 (136)
T 2fo7_A 19 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61 (136)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3556677788888888776666665554 48888888876654
No 52
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=56.65 E-value=21 Score=25.77 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhCCCc---hHHHHHHHHHHhc-CchHHhhHHHHhhcC
Q 013719 92 GLLSFHQALVSDPQD---AFVVWVFASVLYH-GKWKEGVKFARDRAK 134 (437)
Q Consensus 92 glLAfH~ALV~~PqD---plVV~aFasaly~-G~w~eaVkfAr~~ak 134 (437)
++-.|..++...|.+ +.+....|.+.+. |++.+|++..++...
T Consensus 58 A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 58 AEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666788889999998 5555556655554 999999988776543
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=56.64 E-value=16 Score=30.27 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
-++-.|-.||..+|.++.+....|.++. .|++.+|+...++..
T Consensus 23 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 66 (217)
T 2pl2_A 23 AALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66 (217)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4777899999999999999999997776 499999999887643
No 54
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=56.40 E-value=32 Score=23.48 Aligned_cols=45 Identities=18% Similarity=0.021 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhCCC--chHHHHHHHHHH-hc-CchHHhhHHHHhhcCC
Q 013719 91 VGLLSFHQALVSDPQ--DAFVVWVFASVL-YH-GKWKEGVKFARDRAKE 135 (437)
Q Consensus 91 vglLAfH~ALV~~Pq--DplVV~aFasal-y~-G~w~eaVkfAr~~ak~ 135 (437)
-++-.|-+|+...|. ++.+....|.+. .. |++.+|++..++....
T Consensus 58 ~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 58 EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 467788899999999 988888888655 57 9999999998875543
No 55
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=56.12 E-value=21 Score=25.80 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhCCCch---HHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQDA---FVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqDp---lVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
-++-.|..++...|.++ .+....|.+.+ .|++.+|++..++..
T Consensus 20 ~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 20 DASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp HHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 46778888999999998 45555665554 499999999887644
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=56.09 E-value=21 Score=26.53 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHH
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFAR 130 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr 130 (437)
++-.|.+++...|.++.+....|.+.+ .|++.+|++..+
T Consensus 61 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 100 (186)
T 3as5_A 61 GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI 100 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 344444455555555444444443332 255555554443
No 57
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=55.86 E-value=21 Score=26.50 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
++-.|..++...|.++.+...+|.+.+ .|++.+|++..++
T Consensus 95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 555666777777777666666665544 3777777766555
No 58
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=54.54 E-value=21 Score=27.72 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
-++-.|..++..+|.++.+....|.+.+ .|++.+|+...++..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3667888999999999988888886665 499999999877643
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=54.03 E-value=21 Score=28.88 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
-++-.|.+|+...|.++.+-...|.+.+ .|++.+|++..++..
T Consensus 61 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 104 (275)
T 1xnf_A 61 LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104 (275)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3667788888888888887777776654 488888888876643
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=53.06 E-value=22 Score=28.79 Aligned_cols=43 Identities=9% Similarity=-0.118 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~a 133 (437)
-++-.|.+|+..+|.++.+....|.+++. |++.+|++..++..
T Consensus 60 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 103 (228)
T 4i17_A 60 EAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGI 103 (228)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 36677888999999988888888877764 99999998877643
No 61
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=51.94 E-value=7.7 Score=28.78 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhC---CCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 92 GLLSFHQALVSD---PQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 92 glLAfH~ALV~~---PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
++-.|.+||..+ |.++.+...+|.+++ .|++.+|++..++-.
T Consensus 9 A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 54 (117)
T 3k9i_A 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV 54 (117)
T ss_dssp CHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567889999985 666666666776665 499999999877643
No 62
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.89 E-value=26 Score=25.52 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhCCCc---hHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQD---AFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqD---plVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
-++-.|..++...|.+ +.+....|.+.+ .|++.+|+...++..
T Consensus 46 ~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 92 (148)
T 2dba_A 46 GALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI 92 (148)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3677889999999988 555555555554 499999998877644
No 63
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=51.25 E-value=25 Score=27.89 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
++-.|..|+...|.++.+....|.+.+ .|++.+|++..++
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344455555555555555555554443 2556655555444
No 64
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=50.91 E-value=38 Score=25.90 Aligned_cols=46 Identities=15% Similarity=0.038 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
..-+.-.|-+||..+|.++-+..-.|.+.+ .|++.+||..-++.-.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356788899999999999999999996665 5999999998776543
No 65
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=50.45 E-value=25 Score=28.15 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
.--++-.|.+||..+|.++.+....|.+++. |++.+|++..++.
T Consensus 104 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 104 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3447788999999999999998888877765 9999999887764
No 66
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=50.04 E-value=27 Score=27.57 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
-++-.|..|+..+|.++.+....|.+++ .|++.+|+...++..
T Consensus 55 ~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 98 (213)
T 1hh8_A 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL 98 (213)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4777899999999999988888887765 499999998877643
No 67
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=49.86 E-value=23 Score=30.98 Aligned_cols=44 Identities=11% Similarity=0.020 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
-|+-.|..|+..+|.++.+....|.+.+ .|++.+|++..++...
T Consensus 22 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 66 (281)
T 2c2l_A 22 EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66 (281)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3667788888888888887777776665 4888888888776443
No 68
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=49.85 E-value=9.5 Score=30.10 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHH
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKF 128 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkf 128 (437)
-++-.|.+||..+|.++-+....|.+++ .|++.+|++.
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 4888999999999999999999987775 5999887753
No 69
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=48.80 E-value=16 Score=28.36 Aligned_cols=41 Identities=10% Similarity=0.193 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
++-.|..++..+|.++.+...+|.+.+ .|++.+|+...++.
T Consensus 29 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 70 (177)
T 2e2e_A 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70 (177)
T ss_dssp CCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455788888889999888888886664 59999999887653
No 70
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=48.32 E-value=8.9 Score=30.42 Aligned_cols=43 Identities=9% Similarity=-0.089 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 90 WVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 90 WvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
=-++-.|..||..+|.++.+....|.++. .|++.+|+...++.
T Consensus 23 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 23 AQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 34777899999999999999888887665 59999999988764
No 71
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=47.83 E-value=28 Score=28.10 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~a 133 (437)
-++-.|.+|+...|.++.+....|.+++. |++.+|++..++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 36778899999999999988888877764 99999999887644
No 72
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=47.53 E-value=29 Score=27.75 Aligned_cols=45 Identities=11% Similarity=0.080 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhCCCch----------------HHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 90 WVGLLSFHQALVSDPQDA----------------FVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 90 WvglLAfH~ALV~~PqDp----------------lVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
=-++-.|.+|+...|.++ .+....|.+.+ .|+|.+|+...++...
T Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 55 NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 347778999999999988 44445555444 4999999998876443
No 73
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=47.25 E-value=26 Score=30.96 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=31.1
Q ss_pred HHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 93 LLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 93 lLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
+-.|..++...|.++.+....|.++. .|+|.+|+...++.
T Consensus 186 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34677788888999888888886665 49999999887763
No 74
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=47.11 E-value=17 Score=25.54 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhCCCc-------hHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQD-------AFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqD-------plVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
-++-.|..++...|.+ +.+....|.+.+ .|++.+|++..++..
T Consensus 56 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 56 KCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3667788888888877 666666675555 499999999877643
No 75
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=47.10 E-value=32 Score=27.28 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
++-.|..++..+|.++.+-...|.++. .|++.+|+...++.
T Consensus 192 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 677888999999999998888887665 59999999887653
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=46.64 E-value=31 Score=27.83 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhCC-CchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 90 WVGLLSFHQALVSDP-QDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 90 WvglLAfH~ALV~~P-qDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
=-++-.|.+|+..+| .|+.+..-.|.+.+ .|++.+|++..++-.
T Consensus 24 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 69 (228)
T 4i17_A 24 AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI 69 (228)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH
Confidence 347888999999999 88876666665555 499999999877644
No 77
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=46.42 E-value=28 Score=28.31 Aligned_cols=44 Identities=11% Similarity=0.298 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
-|+-.|.+|+..+|.++.+....|.+.+ .|++.+|++..++...
T Consensus 92 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 3677889999999999998888887765 4999999998876544
No 78
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=45.33 E-value=33 Score=28.52 Aligned_cols=42 Identities=12% Similarity=0.043 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
++-.|.+++...|.++.+....|.+.+ .|++.+|+...++..
T Consensus 56 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 98 (359)
T 3ieg_A 56 ALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 444566666667776666555554443 377777776666543
No 79
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=45.18 E-value=36 Score=26.32 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=18.2
Q ss_pred HHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 95 SFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 95 AfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
.|..++...|.++.+....|.+.+ .|++.+|+...++
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 135 YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555555555444443333 2555555555443
No 80
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=44.15 E-value=37 Score=27.36 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
.=-++-.|..++...|.++.+....|.+++ .|++.+|++..++...
T Consensus 87 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 87 PKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 334777889999999999988888886665 4999999999887554
No 81
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=44.03 E-value=22 Score=29.23 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHhhhCCCchHHHHH----------------HHHHHh-cCchHHhhHHHHhhc
Q 013719 88 TLWVGLLSFHQALVSDPQDAFVVWV----------------FASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 88 sLWvglLAfH~ALV~~PqDplVV~a----------------Fasaly-~G~w~eaVkfAr~~a 133 (437)
.+=-++-.|.+|+..+|.++.+... .|.+++ .|++.+|+...++-.
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445788899999999999987766 776665 499999998877643
No 82
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=43.33 E-value=41 Score=26.01 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
-++-.|..++...|.++.+....|.+.. .|++.+|++..++.
T Consensus 26 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 68 (225)
T 2vq2_A 26 QATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA 68 (225)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3556677777777777776666665554 47788877766553
No 83
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=43.13 E-value=40 Score=26.64 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
.--++-.|..++...|.++.+....|.+.+ .|++.+|+++.++.
T Consensus 73 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 117 (243)
T 2q7f_A 73 LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117 (243)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 345677788888889988888877776665 48999998887764
No 84
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=42.54 E-value=31 Score=30.09 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARD 131 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~ 131 (437)
-++-.|.+|+..+|.++.+....|.+++. |++.+|++..++
T Consensus 56 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 56 QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36778999999999999998888877764 999999988665
No 85
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=42.31 E-value=24 Score=27.35 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhhh------------------CCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 89 LWVGLLSFHQALVS------------------DPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 89 LWvglLAfH~ALV~------------------~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
+--|+-.|.+||.. +|.++.+....|.+++ .|+|.+|+..+.+..
T Consensus 27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44577788888877 4444455555565554 499999999887643
No 86
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=42.05 E-value=37 Score=29.63 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
++-+|..|+..+|.|+-+....|.++. .|++.+|+...++...
T Consensus 204 a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 204 EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 455678899999999999999997775 5999999999887544
No 87
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=41.71 E-value=40 Score=27.86 Aligned_cols=43 Identities=7% Similarity=-0.046 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
++-.|..|+...|.++.+....|.+.. .|++.+|++..++...
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777766666665443 4777777777666433
No 88
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=41.42 E-value=29 Score=30.29 Aligned_cols=43 Identities=19% Similarity=0.418 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHhc------------CchHHhhHHHHh
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLYH------------GKWKEGVKFARD 131 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly~------------G~w~eaVkfAr~ 131 (437)
+=-+|-.|-+||..+|.++-+.+..+.+++. |++.+|++.-++
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~k 116 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQ 116 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHH
Confidence 3458889999999999999999999988873 588888887654
No 89
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=41.34 E-value=41 Score=26.60 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
++-.|.+++...|.++.+....|.+.+ .|++.+|++..++
T Consensus 110 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 110 AKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 555666777777777666555554443 3777777766655
No 90
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=41.04 E-value=38 Score=29.54 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHH
Q 013719 90 WVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFAR 130 (437)
Q Consensus 90 WvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr 130 (437)
+-++-.|.+|+..+|.++.+....+.++. .|++.+|+...+
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34555555555555555544444443333 255555554433
No 91
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=40.62 E-value=44 Score=26.86 Aligned_cols=40 Identities=13% Similarity=0.009 Sum_probs=17.2
Q ss_pred HHHHHHHHhh--hCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 92 GLLSFHQALV--SDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV--~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
++-.|..++. ..|.++.+....|.+.+ .|++.+|++..++
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444 44444444444443332 2455555444433
No 92
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=40.19 E-value=37 Score=28.01 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhc
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRA 133 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~a 133 (437)
++-.|.+++...|.++.+....|.+.+. |++.+|++..++..
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5667888999999999999999877764 99999999887643
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=38.88 E-value=36 Score=29.69 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
++-.|..||..+|.++-+....|.++. .|++.+|+...++.
T Consensus 136 A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 136 ALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 666789999999999999888886654 59999999887754
No 94
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=38.43 E-value=40 Score=31.06 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
|+-.|.+++...|.++.+...++.+.. .|+|.+|++..++.
T Consensus 535 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 535 AIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666788899999999988888886665 59999999887764
No 95
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=38.28 E-value=46 Score=28.66 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
++-.|.+|+...|.++.+....|.+.+ .|++.+|++..++..
T Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 84 TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677888999999999888888886665 499999998877643
No 96
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=37.89 E-value=51 Score=27.17 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
++-.|..++...|.++.+....|.+.+ .|++.+|+...++
T Consensus 191 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 191 AAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666777777778877777666665554 4788888777665
No 97
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=37.83 E-value=50 Score=27.39 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
++-.|..++..+|.++.+....|.+.+ .|++.+|+...++..
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455566677777777776666665554 377777777666543
No 98
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=37.83 E-value=35 Score=27.72 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 88 TLWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 88 sLWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
.+--++-.|..++..+|.++.+....|.+.+ .|++.+|++..++...
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 65 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3455788899999999999988888887665 4999999999887554
No 99
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=37.34 E-value=33 Score=32.38 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~ 131 (437)
++-.|.+||..+|.++.+-.-.+.+++. |++.+|+...++
T Consensus 185 Al~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 185 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3344444555555554444444444432 555555544433
No 100
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=36.82 E-value=50 Score=28.43 Aligned_cols=40 Identities=8% Similarity=0.026 Sum_probs=22.7
Q ss_pred HHHHHHHHhhhCCC--chHHHHHHHHHHhc-CchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQ--DAFVVWVFASVLYH-GKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~Pq--DplVV~aFasaly~-G~w~eaVkfAr~ 131 (437)
++-.|..|+..+|. ++.+...+|.+++. |++.+|++..++
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 238 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA 238 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55566666666666 55555555544432 666666665554
No 101
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=36.53 E-value=54 Score=27.01 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
++-.|..++...|.++.+....|.+.+ .|++.+|++..++..
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 199 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV 199 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455689999999999988888887765 499999999887643
No 102
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=35.39 E-value=56 Score=27.76 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
++-.|..|+...|.++.+....|.+.. .|++.+|+...++.
T Consensus 236 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777888888888888887777776654 48888888887663
No 103
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=34.97 E-value=50 Score=27.43 Aligned_cols=46 Identities=9% Similarity=-0.021 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHhhhCCCchHHHHHH-----------------HHHHh-cCchHHhhHHHHhhc
Q 013719 88 TLWVGLLSFHQALVSDPQDAFVVWVF-----------------ASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 88 sLWvglLAfH~ALV~~PqDplVV~aF-----------------asaly-~G~w~eaVkfAr~~a 133 (437)
..=-++-.|.+++...|.++.+..+. |.+.+ .|++.+|+...++..
T Consensus 112 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 112 DTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44456778899999999999888553 44444 499999999988754
No 104
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=34.86 E-value=55 Score=29.62 Aligned_cols=44 Identities=7% Similarity=-0.006 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhc
Q 013719 90 WVGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRA 133 (437)
Q Consensus 90 WvglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~a 133 (437)
--|+-.|.+||..+|.++-+....|.+++. |++.+|+...++..
T Consensus 247 ~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 247 DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 347788999999999999988888877765 99999999887643
No 105
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=34.79 E-value=34 Score=24.97 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=23.9
Q ss_pred hCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 102 SDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 102 ~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
.+|.|+.+....|.+.+. |++.+|++..++-
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 33 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEEL 33 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 479999999999977764 9999999987764
No 106
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=34.65 E-value=61 Score=26.88 Aligned_cols=47 Identities=6% Similarity=0.060 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhhhCCCchH---HHHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 88 TLWVGLLSFHQALVSDPQDAF---VVWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 88 sLWvglLAfH~ALV~~PqDpl---VV~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
..--++-.|..++...|.++. +....|.+.+ .|++.+|+...++...
T Consensus 30 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 30 KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 344577889999999999944 4444555554 4999999998877543
No 107
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=34.25 E-value=53 Score=29.58 Aligned_cols=41 Identities=10% Similarity=-0.046 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
|+-.|.+||..+|.++.+....|.+++. |++.+|+...++.
T Consensus 215 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 215 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7778999999999999988888877764 9999999887764
No 108
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=33.72 E-value=61 Score=27.52 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
++-.|..++...|.++.+....|.+.+ .|++.+|++..++
T Consensus 83 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 123 (368)
T 1fch_A 83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123 (368)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 455566666666766666665654443 3667776666554
No 109
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=33.51 E-value=59 Score=28.60 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
++-.|.+|+..+|.++.+....|.+.. .|++.+|+...++.
T Consensus 79 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 79 ALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344456667777777666666664443 37777777666654
No 110
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=33.34 E-value=64 Score=28.10 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
++-.|..++..+|.++.+...++.++. .|++.+|+...++
T Consensus 256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777788888888888877777776554 3888888777655
No 111
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=30.85 E-value=69 Score=28.15 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhCCCchHH----HHHHHHHHh-cCchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFV----VWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplV----V~aFasaly-~G~w~eaVkfAr~~ 132 (437)
-|+-.|..++...|.++.. ....|.++. .|++.+|+.+.++.
T Consensus 275 ~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 275 DATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3777777777777777653 222333333 37777777776653
No 112
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=30.77 E-value=51 Score=29.68 Aligned_cols=43 Identities=14% Similarity=-0.011 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhcC
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAK 134 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ak 134 (437)
++-.|.+++..+|.++.+....|.+++. |++.+|++..+....
T Consensus 78 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 121 (537)
T 3fp2_A 78 VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSL 121 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5667888999999999888888877764 999999988764433
No 113
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=30.42 E-value=50 Score=31.14 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~ 131 (437)
++-.|-+||..+|.++.+-.-.+.++.. |++.+|+.+.++
T Consensus 151 Al~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~k 191 (382)
T 2h6f_A 151 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIAD 191 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4555555555566555555555544433 555555555444
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=29.94 E-value=80 Score=24.80 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhCCCch----------------HHHHHHHHHHhc-CchHHhhHHHHhhcC
Q 013719 92 GLLSFHQALVSDPQDA----------------FVVWVFASVLYH-GKWKEGVKFARDRAK 134 (437)
Q Consensus 92 glLAfH~ALV~~PqDp----------------lVV~aFasaly~-G~w~eaVkfAr~~ak 134 (437)
|+-.|..|+...|.++ .+....|.+.+. |++.+|+...++...
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6667889999888766 666667766654 999999998776443
No 115
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=28.67 E-value=75 Score=29.26 Aligned_cols=40 Identities=5% Similarity=-0.015 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
++-.|..++...|.++.+....+.+.. .|++.+|++..++
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566666666666666666555554443 3666666666554
No 116
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=27.82 E-value=73 Score=30.19 Aligned_cols=44 Identities=7% Similarity=-0.036 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhcC
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAK 134 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ak 134 (437)
-|+-.|.+||..+|.++.+..-.|.+++. |++.+|+...++...
T Consensus 335 ~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 37778999999999999888888877765 999999998776443
No 117
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=27.82 E-value=81 Score=28.38 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
++-.|.+++...|.++.+...+|.+.+ .|++.+|++..++..
T Consensus 447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 566788999999999988888887765 499999999877643
No 118
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=27.82 E-value=81 Score=27.46 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=33.0
Q ss_pred HHHHHHHHhhh-------CCCchHHH----HHHHHHHhc-CchHHhhHHHHh
Q 013719 92 GLLSFHQALVS-------DPQDAFVV----WVFASVLYH-GKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~-------~PqDplVV----~aFasaly~-G~w~eaVkfAr~ 131 (437)
+|-.|.+||.. +|.++-.- .--|.+++. |++.+|+.--++
T Consensus 76 Al~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 76 ALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 77788999999 99998766 667777775 999999987665
No 119
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=27.41 E-value=76 Score=30.05 Aligned_cols=44 Identities=9% Similarity=0.041 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhcC
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAK 134 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ak 134 (437)
-|+-.|.+||..+|.++.+....|.+.+. |++.+|++..++-..
T Consensus 121 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 121 EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778999999999999988888877764 999999998876443
No 120
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=26.94 E-value=88 Score=27.78 Aligned_cols=43 Identities=19% Similarity=-0.006 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhhc
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRA 133 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~a 133 (437)
-++-.|..++..+|.++.+....|.+++. |++.+|+...++..
T Consensus 57 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 57 KVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 47778999999999999888888877764 99999998877643
No 121
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=26.85 E-value=77 Score=30.46 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHH--Hh-cCchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASV--LY-HGKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasa--ly-~G~w~eaVkfAr~ 131 (437)
|+-.|.+||..+|.++.+...++.+ +. .|++.+|++..++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3445566666666666655555543 22 3666666665443
No 122
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.63 E-value=1e+02 Score=27.13 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhh-HHHH
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGV-KFAR 130 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaV-kfAr 130 (437)
++-.|..||..+|.||-+....+.+.. .|++.+++ .+-+
T Consensus 219 A~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 219 AEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 445677899999999999988886665 49998765 4544
No 123
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=25.92 E-value=84 Score=29.18 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 91 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
-|+-.+.+||..+|.++.+....|.+++. |++.+|++..++.
T Consensus 291 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A 333 (370)
T 1ihg_A 291 GAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA 333 (370)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 47788999999999999998888877764 9999999887753
No 124
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=25.77 E-value=83 Score=30.22 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~~ 132 (437)
|+-.|.+|+..+|.++.+....|.+++. |++.+|++..++.
T Consensus 59 A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 100 (477)
T 1wao_1 59 ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETV 100 (477)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556777788888887777777766654 8888888776653
No 125
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=25.07 E-value=86 Score=29.78 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
|+-.|.+|+..+|.++.+....|.+++ .|++.+|++..++-
T Consensus 76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 117 (568)
T 2vsy_A 76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456678889999999888888886665 49999999887764
No 126
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=24.65 E-value=1.1e+02 Score=26.64 Aligned_cols=43 Identities=12% Similarity=0.322 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhhhCCCchHH----HHHHHHHHh-cCchHHhhHHHHh
Q 013719 89 LWVGLLSFHQALVSDPQDAFV----VWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplV----V~aFasaly-~G~w~eaVkfAr~ 131 (437)
+=-++-.|..|+...|.|+.. ....|.+.+ .|++.+|+...++
T Consensus 64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (411)
T 4a1s_A 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111 (411)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334788899999999999853 333444443 4999999988654
No 127
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=24.43 E-value=58 Score=32.70 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=53.3
Q ss_pred hhHHHHHHHh-------hh---hhhhhhhhHhhhhhcc----cccCCCchhHHHHHHhhcCcccCCCCCCCchhHHHHHH
Q 013719 30 ESSICLLRRY-------NL---LKILLPFHAAYLDQQA----GKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLS 95 (437)
Q Consensus 30 EaSLRLLWRf-------GL---LeiLLPfQAAYl~~q~----~~r~~~rSnMLL~Lf~nLDklvapdRPC~~sLWvglLA 95 (437)
|..|+++++. || -|++=|.|..|+.+-- ..-+.-++-.+..+-+.+++-|.=-++.+.++|+++-|
T Consensus 135 ~~GL~i~r~ll~~v~e~GlPvaTEvld~~~~qyv~Dllsw~aIGARt~esq~hre~Asgl~~PVg~Kngt~g~i~~~~~A 214 (370)
T 1of8_A 135 NKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDA 214 (370)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEECCSSSTHHHHGGGCSEEEECTTTTTCHHHHHHHHTCSSCEEEECCTTSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCceEEeecCcccHHHHHHHHhhccccCcccccHHHHHHHhcCCCeEEEcCCCCCCHHHHHHH
Confidence 7788885554 43 3568899999986643 55556666777778889999999999999999999988
Q ss_pred HHH
Q 013719 96 FHQ 98 (437)
Q Consensus 96 fH~ 98 (437)
.+.
T Consensus 215 i~a 217 (370)
T 1of8_A 215 CQA 217 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 128
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=24.31 E-value=82 Score=32.78 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~ 131 (437)
|+-.|.+||..+|.++.+....|.++.. |++.+|++..++
T Consensus 62 A~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~k 102 (723)
T 4gyw_A 62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 102 (723)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6667788888888888877777766654 888888877665
No 129
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=24.23 E-value=83 Score=32.74 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=25.6
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhc-CchHHhhHHHHh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARD 131 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasaly~-G~w~eaVkfAr~ 131 (437)
|+-.|.+||..+|.++.+-...|.+++. |++.+|++..++
T Consensus 96 A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 96 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5556666777777776666666655543 777777666554
No 130
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=23.79 E-value=1.3e+02 Score=24.35 Aligned_cols=41 Identities=10% Similarity=0.254 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhCCCchHHH----HHHHHHHh-cCchHHhhHHHHh
Q 013719 91 VGLLSFHQALVSDPQDAFVV----WVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 91 vglLAfH~ALV~~PqDplVV----~aFasaly-~G~w~eaVkfAr~ 131 (437)
-++-.|.+|+...|.|+... ...|.+.+ .|++.+|+...++
T Consensus 23 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 68 (338)
T 3ro2_A 23 AGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68 (338)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 47778889999999997533 34444443 4999999988664
No 131
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=23.68 E-value=1.1e+02 Score=27.14 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 89 LWVGLLSFHQALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 89 LWvglLAfH~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
+=-++-.|..++...|.++.+....|.+.. .|++.+|++..++..
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334666788899999999988888886665 499999999877643
No 132
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=23.52 E-value=1.2e+02 Score=24.96 Aligned_cols=43 Identities=5% Similarity=-0.018 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhCCCchHH---HHHHHHHHh-cCchHHhhHHHHhhcC
Q 013719 92 GLLSFHQALVSDPQDAFV---VWVFASVLY-HGKWKEGVKFARDRAK 134 (437)
Q Consensus 92 glLAfH~ALV~~PqDplV---V~aFasaly-~G~w~eaVkfAr~~ak 134 (437)
++-.|-.++...|.++.. ....|.+.+ .|+|.+|++..++...
T Consensus 23 A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 69 (225)
T 2yhc_A 23 AITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 69 (225)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677888899999988753 333344444 4999999998877543
No 133
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=23.30 E-value=1e+02 Score=29.29 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHH-hc---CchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDPQDAFVVWVFASVL-YH---GKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~PqDplVV~aFasal-y~---G~w~eaVkfAr~~ 132 (437)
|+-.|.+|+..+|.++.+....+.++ .. |++.+|+...++.
T Consensus 110 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 55678889999999999888888666 46 8999999987764
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=22.15 E-value=1.2e+02 Score=27.34 Aligned_cols=44 Identities=7% Similarity=0.003 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhhCCCch---------------HHHHHHHHHHh-cCchHHhhHHHHhhc
Q 013719 90 WVGLLSFHQALVSDPQDA---------------FVVWVFASVLY-HGKWKEGVKFARDRA 133 (437)
Q Consensus 90 WvglLAfH~ALV~~PqDp---------------lVV~aFasaly-~G~w~eaVkfAr~~a 133 (437)
--|+-.|.+||...|.++ .+-...|.+++ .|++.+|+...++..
T Consensus 164 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 164 KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 347889999999999994 45455555544 499999999877643
No 135
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=21.91 E-value=92 Score=24.79 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=29.3
Q ss_pred HHHHHHHHhhh--------CCCchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVS--------DPQDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~--------~PqDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
++-.|.+|+.. .|..+.+...+|.+.+ .|++.+|+...++.
T Consensus 146 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 146 VEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56677788877 6666666666665554 49999999887654
No 136
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=21.82 E-value=1.5e+02 Score=25.64 Aligned_cols=34 Identities=9% Similarity=-0.104 Sum_probs=16.3
Q ss_pred HHhhhCCCchHHHHHHHHHHh-cCchHHhhHHHHh
Q 013719 98 QALVSDPQDAFVVWVFASVLY-HGKWKEGVKFARD 131 (437)
Q Consensus 98 ~ALV~~PqDplVV~aFasaly-~G~w~eaVkfAr~ 131 (437)
.||...|.++.+.-.++.++. .|+..+|+.+-++
T Consensus 194 ~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 194 LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345555555555544443332 2555555544443
No 137
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=21.33 E-value=1e+02 Score=29.19 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhCC---CchHHHHHHHHHHh-cCchHHhhHHHHhh
Q 013719 92 GLLSFHQALVSDP---QDAFVVWVFASVLY-HGKWKEGVKFARDR 132 (437)
Q Consensus 92 glLAfH~ALV~~P---qDplVV~aFasaly-~G~w~eaVkfAr~~ 132 (437)
|+-+|.+|+..+| .++.+-...|.+++ .|++.+|+...++-
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556778889999 89998888887775 49999999987764
No 138
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=20.66 E-value=38 Score=32.42 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=33.2
Q ss_pred HHHHHhhcCcccCCCCC----CCchhHHHHHHHHHHhhhCCCchHHHHHHH-HHHhcCchHHhh
Q 013719 68 LMRLFFNLDKLVSCDRP----ADYTLWVGLLSFHQALVSDPQDAFVVWVFA-SVLYHGKWKEGV 126 (437)
Q Consensus 68 LL~Lf~nLDklvapdRP----C~~sLWvglLAfH~ALV~~PqDplVV~aFa-saly~G~w~eaV 126 (437)
|-++|.....-+.+++| |.+....++++| ++-...+- ..+|-|+|.|=.
T Consensus 261 l~~~~~~~~~gid~~k~vI~yCgsGvtA~~~~l----------aL~~lG~~~v~lYdGSWsEW~ 314 (327)
T 3utn_X 261 LEKALKDFHCTLDPSKPTICSCGTGVSGVIIKT----------ALELAGVPNVRLYDGSWTEWV 314 (327)
T ss_dssp HHHHHHHTTCCCCTTSCEEEECSSSHHHHHHHH----------HHHHTTCCSEEEESSHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCEEEECChHHHHHHHHH----------HHHHcCCCCceeCCCcHHHhc
Confidence 44555555566778998 888888888877 33233332 458999999854
Done!