BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013721
         (437 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4IVF|A Chain A, Crystal Structure Of Glutathione Transferase Homolog From
           Lodderomyces Elongisporus, Target Efi-501753, With Two
           Gsh Per Subunit
 pdb|4IVF|B Chain B, Crystal Structure Of Glutathione Transferase Homolog From
           Lodderomyces Elongisporus, Target Efi-501753, With Two
           Gsh Per Subunit
 pdb|4IVF|C Chain C, Crystal Structure Of Glutathione Transferase Homolog From
           Lodderomyces Elongisporus, Target Efi-501753, With Two
           Gsh Per Subunit
 pdb|4IVF|D Chain D, Crystal Structure Of Glutathione Transferase Homolog From
           Lodderomyces Elongisporus, Target Efi-501753, With Two
           Gsh Per Subunit
 pdb|4IVF|E Chain E, Crystal Structure Of Glutathione Transferase Homolog From
           Lodderomyces Elongisporus, Target Efi-501753, With Two
           Gsh Per Subunit
 pdb|4IVF|F Chain F, Crystal Structure Of Glutathione Transferase Homolog From
           Lodderomyces Elongisporus, Target Efi-501753, With Two
           Gsh Per Subunit
 pdb|4IVF|G Chain G, Crystal Structure Of Glutathione Transferase Homolog From
           Lodderomyces Elongisporus, Target Efi-501753, With Two
           Gsh Per Subunit
 pdb|4IVF|H Chain H, Crystal Structure Of Glutathione Transferase Homolog From
           Lodderomyces Elongisporus, Target Efi-501753, With Two
           Gsh Per Subunit
          Length = 231

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 218 KKIRRVRRDTNSNGHEHAVGYVTGDQYYGAKASINVWAPRVVNQYEFSLSQMWVISGSFG 277
           K+I  V  D  S    +   Y+ GD+Y  A  ++  WA R +++ E  ++Q W + G + 
Sbjct: 148 KRIYGVFEDILSRNKANDSKYLVGDRYTVADFALLGWAYR-LSRLEIDINQ-WPLLGKWY 205

Query: 278 D---DLNTIEAGWQVSPE 292
           D    L  ++ G++V P+
Sbjct: 206 DSLLKLPAVQKGFEVPPK 223


>pdb|3RQ0|A Chain A, The Crystal Structure Of A Glycosyl Hydrolases (Gh) Family
           Protein 16 From Mycobacterium Smegmatis Str. Mc2 155
          Length = 269

 Score = 29.3 bits (64), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 166 ARPNGHNPSGMITEEFQLWSFSGESCPEGTIPIRRTTEQDVLRATSVGKFGRKKIRRVRR 225
           A PN    S +  +EF   + S  S  + TI   R T QD       G+ G  + R  RR
Sbjct: 32  AVPNQTAASYVFADEFDGPAGSAPSAAKWTIAKARETIQDPTYWEQPGRIG--QYRNDRR 89

Query: 226 DTNSNGHEHAV--GYVTGDQYYGAKASINVW 254
           +   +G  + V      GD YY AK + +VW
Sbjct: 90  NVFLDGKSNLVIRAAKDGDTYYSAKLA-SVW 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,690,525
Number of Sequences: 62578
Number of extensions: 591616
Number of successful extensions: 1176
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1176
Number of HSP's gapped (non-prelim): 5
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)