BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013721
         (437 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P98094|CO3_EPTBU Complement C3 (Fragment) OS=Eptatretus burgeri GN=C3 PE=1 SV=1
          Length = 1620

 Score = 33.1 bits (74), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 19/113 (16%)

Query: 90  SSDTGKNLNATNQTTLRPEEELHKLKF-IRAHLNKINKPAVKTIQSPDGDIIDCVETHLQ 148
           +S  G     T+Q    P  +++   F +   LN I    V  I +PDG ++D +E +  
Sbjct: 96  TSRRGLVFAQTDQPIYTPNNDVNIRLFPVTRQLNPILSSLVVDIMNPDGVVVDRIEKN-- 153

Query: 149 PAFDHPKLKGQRPLDPPA---------------RPNGHNPSGMITEEFQLWSF 186
            AF+  K+   RP   PA               +P  +  SG   EE+ L +F
Sbjct: 154 -AFEVEKVMELRPFHVPAITSLGDWKIVSWMKDKPQFNYTSGFKVEEYVLPTF 205


>sp|Q03280|TOM1_YEAST E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=TOM1 PE=1 SV=1
          Length = 3268

 Score = 32.3 bits (72), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 11/117 (9%)

Query: 9   LVGVAFLCAKTRHKW--YRFDHSRSRQ-----QQQHKCTETQTGFQKQT-TTQGSFSNMT 60
           LV + F   K   KW   RF H  S       QQ++   ETQT  +K T TTQ    +  
Sbjct: 192 LVDLYFDKKKVPQKWRKLRFTHYTSNDFKKSSQQKNNINETQTSIKKVTMTTQELCEHSL 251

Query: 61  SSSCCKISPIIPIFVSYLLVLSSSICLVHSSDTGKNLNATNQTTLRPEEELHKLKFI 117
                K   ++P    +   + +S+    S D+G+N++  N      E +L+ + F+
Sbjct: 252 QQIFDKGMALLPAESWFDFSIKASVAKAFSDDSGENIDLRNIII---ETKLNAIAFV 305


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,022,335
Number of Sequences: 539616
Number of extensions: 7853121
Number of successful extensions: 15126
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15120
Number of HSP's gapped (non-prelim): 8
length of query: 437
length of database: 191,569,459
effective HSP length: 120
effective length of query: 317
effective length of database: 126,815,539
effective search space: 40200525863
effective search space used: 40200525863
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)