BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013722
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 165 QSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSIS-SARVL-----HGERRLHQMLF 218
Q+ C +E QK + KL C+ + G+ PS ++ +AR+L H ER + L
Sbjct: 70 QAFYCDVECQKEDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLL 129
Query: 219 ADRDFE 224
A R+FE
Sbjct: 130 AVREFE 135
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 8 LIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQ 46
L R + P R+V +N+VC + D+V RH + E IQ
Sbjct: 241 LTRHVKPERLVANNEVC---VKLVADAVERHALRAENIQ 276
>pdb|1U8S|A Chain A, Crystal Structure Of Putative Glycine Cleavage System
Transcriptional Repressor
pdb|1U8S|B Chain B, Crystal Structure Of Putative Glycine Cleavage System
Transcriptional Repressor
Length = 192
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEI 149
++ I GTDRPG+ +EV ++T C+++ + I
Sbjct: 5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRI 39
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 8 LIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQ 46
L R + P R+V +N+VC + D+V RH + E IQ
Sbjct: 259 LTRHVKPERLVANNEVC---VKLVADAVERHALRAENIQ 294
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 165 QSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSIS-SARVL-----HGERRLHQMLF 218
Q+ C +E QK + KL C+ + G+ PS ++ +AR+L H ER + L
Sbjct: 70 QAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERTPSEKLL 129
Query: 219 ADRDFE 224
A ++FE
Sbjct: 130 AVKEFE 135
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 165 QSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSIS-SARVL-----HGERRLHQMLF 218
Q+ C +E QK + KL C+ + G+ PS ++ +AR+L H ER + L
Sbjct: 70 QAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERTPSEKLL 129
Query: 219 ADRDFE 224
A ++FE
Sbjct: 130 AVKEFE 135
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 165 QSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSIS-SARVL-----HGERRLHQMLF 218
Q+ C +E QK + KL C+ + G+ PS ++ +AR+L H ER + L
Sbjct: 70 QAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERTPSEKLL 129
Query: 219 ADRDFE 224
A ++FE
Sbjct: 130 AVKEFE 135
>pdb|4DYU|A Chain A, The Crystal Structure Of Dna StarvationSTATIONARY PHASE
PROTECTION Protein Dps From Yersinia Pestis Kim 10
pdb|4DYU|B Chain B, The Crystal Structure Of Dna StarvationSTATIONARY PHASE
PROTECTION Protein Dps From Yersinia Pestis Kim 10
pdb|4DYU|C Chain C, The Crystal Structure Of Dna StarvationSTATIONARY PHASE
PROTECTION Protein Dps From Yersinia Pestis Kim 10
pdb|4DYU|D Chain D, The Crystal Structure Of Dna StarvationSTATIONARY PHASE
PROTECTION Protein Dps From Yersinia Pestis Kim 10
pdb|4DYU|E Chain E, The Crystal Structure Of Dna StarvationSTATIONARY PHASE
PROTECTION Protein Dps From Yersinia Pestis Kim 10
pdb|4DYU|F Chain F, The Crystal Structure Of Dna StarvationSTATIONARY PHASE
PROTECTION Protein Dps From Yersinia Pestis Kim 10
pdb|4DYU|G Chain G, The Crystal Structure Of Dna StarvationSTATIONARY PHASE
PROTECTION Protein Dps From Yersinia Pestis Kim 10
pdb|4DYU|H Chain H, The Crystal Structure Of Dna StarvationSTATIONARY PHASE
PROTECTION Protein Dps From Yersinia Pestis Kim 10
pdb|4DYU|I Chain I, The Crystal Structure Of Dna StarvationSTATIONARY PHASE
PROTECTION Protein Dps From Yersinia Pestis Kim 10
pdb|4DYU|J Chain J, The Crystal Structure Of Dna StarvationSTATIONARY PHASE
PROTECTION Protein Dps From Yersinia Pestis Kim 10
pdb|4DYU|K Chain K, The Crystal Structure Of Dna StarvationSTATIONARY PHASE
PROTECTION Protein Dps From Yersinia Pestis Kim 10
pdb|4DYU|L Chain L, The Crystal Structure Of Dna StarvationSTATIONARY PHASE
PROTECTION Protein Dps From Yersinia Pestis Kim 10
Length = 170
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 6 AKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGG 65
AKL++ + NDV EH V + +N+ VIQF +DL+L+ +A+ + G
Sbjct: 7 AKLVKTKPSELLYTRNDVEEHVKVATIKRLNQM-----VIQF-IDLSLITKQAHWNMRGA 60
Query: 66 YLMDVFYVTD 75
+ V + D
Sbjct: 61 NFVAVHEMLD 70
>pdb|2JHE|A Chain A, N-Terminal Domain Of Tyrr Transcription Factor (Residues 1
- 190)
pdb|2JHE|B Chain B, N-Terminal Domain Of Tyrr Transcription Factor (Residues 1
- 190)
pdb|2JHE|C Chain C, N-Terminal Domain Of Tyrr Transcription Factor (Residues 1
- 190)
pdb|2JHE|D Chain D, N-Terminal Domain Of Tyrr Transcription Factor (Residues 1
- 190)
Length = 190
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGR 363
+ LE++ +DR GL ++ +L G+ +R EI +GR
Sbjct: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,126,496
Number of Sequences: 62578
Number of extensions: 478949
Number of successful extensions: 1073
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 11
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)