BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013722
(437 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 14 PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
PPR I N + +VI+V+ ++R G+L E+ L DL+L I A+I++ G ++D FYV
Sbjct: 833 PPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYV 892
Query: 74 TDINGQKIGDQATISYIK 91
TD+ GQKI A I+ I+
Sbjct: 893 TDLTGQKIDSPARIATIR 910
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVD-PKIVDSIQHQIG 392
DR GLLS+IT L + L I A I+T G KV DTF+VTD +G +D P + +I++++
Sbjct: 855 DRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKIDSPARIATIRNRLM 914
Query: 393 RTI 395
T+
Sbjct: 915 ATL 917
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 105 RSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
R+ + S ++ IE+ G DRPGLLSE++ L+DLS + SA I T + +V D
Sbjct: 835 RAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTD 894
Query: 165 QSSGCAIEDQKRLLKIKKLLCNVL 188
+G I+ R+ I+ L L
Sbjct: 895 L-TGQKIDSPARIATIRNRLMATL 917
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 81/213 (38%), Gaps = 26/213 (12%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
T I + D P LLS ++ ++V A+I+T A AL + ED++R
Sbjct: 736 TEITVLAQDHPRLLSVIAGACVGAGGNIVDAQIFT-TADGRALDTILISREFDRDEDERR 794
Query: 177 LL-KIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRP 235
++ +L+ +VL +G P M + G + + P
Sbjct: 795 RAERVGRLIEDVL--SGKSWLPEMIEKRTKPKRGAK------------------VFKIPP 834
Query: 236 HVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKH 295
I + ++ + + DRP LL + L+D+ + + T + +Y+
Sbjct: 835 RAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTD 894
Query: 296 VDGFPISSEAE----RQRVMACLEAAIERRASE 324
+ G I S A R R+MA LE R +
Sbjct: 895 LTGQKIDSPARIATIRNRLMATLEGIAPERGGK 927
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 10 RRMN----PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGG 65
RRM PPRVVIDN + TVI+V+ +R G+L +V L +L I+ A+I++ G
Sbjct: 847 RRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGM 906
Query: 66 YLMDVFYVTDINGQKIGDQATISYIKTTV 94
+DVFYV D+ G KI D ++ ++ T+
Sbjct: 907 RAVDVFYVRDLLGMKITDPVRLARLRETL 935
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 20/209 (9%)
Query: 111 VPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGC 169
+P + T + + D PGL S+++ L S+V A I T + A V+D GC
Sbjct: 750 IPERGVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQD-GEGC 808
Query: 170 AIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCV 229
+ E+ +L ++ L+ L D+R I A RR+ +
Sbjct: 809 SFEEPHQLGRLNHLVEQALSGRLDIRK---GIEDASHHSTSRRMRAI------------- 852
Query: 230 NYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQ 289
+ P V I + + +T + + +DRP LL D L+ + + T M A
Sbjct: 853 --HVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVD 910
Query: 290 EYYIKHVDGFPISSEAERQRVMACLEAAI 318
+Y++ + G I+ R+ L A++
Sbjct: 911 VFYVRDLLGMKITDPVRLARLRETLLASL 939
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 52 NLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVET-------------NA 98
++V + + SDG +D F+V D G + + + VE +A
Sbjct: 782 SIVDARIHTLSDG-MALDTFWVQDGEGCSFEEPHQLGRLNHLVEQALSGRLDIRKGIEDA 840
Query: 99 SFLNSMRS--SVGVVP--------SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAE 148
S ++ R ++ V P S +T IE+ G DRPGLL +V++ L+ S + SA
Sbjct: 841 SHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAH 900
Query: 149 IWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPS 198
I T+ RA + +V+D G I D RL ++++ L L T+ + TP+
Sbjct: 901 ITTYGMRAVDVFYVRDL-LGMKITDPVRLARLRETLLASL-TSAPVTTPA 948
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSI 387
+E+ DR GLL D+T L L I A I+T G + D F+V D G KI D +
Sbjct: 871 IEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYVRDLLGM----KITDPV 926
Query: 388 Q 388
+
Sbjct: 927 R 927
>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain
ymp) GN=glnD PE=3 SV=1
Length = 899
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 43/215 (20%)
Query: 232 NSRPHVTILDCSDRDY---TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRME-A 287
+S P V I + + R++ T + I + D+ TV ++ + ++ ++T +
Sbjct: 686 DSGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFT 745
Query: 288 YQEYYIKHVDGFPISSEAERQRVM--ACLEAA---------IERRASEGLE--------- 327
Y + DG I R + + +EA I+RR L+
Sbjct: 746 LDTYVVLDADGGSIGDNPARIKQIREGLIEALKNPDEYPTIIQRRVPRQLKHFAFAPQVT 805
Query: 328 -----------LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASG 376
LEL DR GLL+ I RI EY L ++ A+I+T+G +V+D FFVTDA+
Sbjct: 806 IHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANN 865
Query: 377 NPV-DPKIVDSIQHQIGRTILQVKGNLNTPPKLPQ 410
P+ DP++ +Q I R L+ P PQ
Sbjct: 866 QPLSDPELCARLQETIVR-------RLSEPSAQPQ 893
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 3 DEFAKLIRRMNP---------PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNL 53
DE+ +I+R P P+V I ND T++++ + +R G+L + + ++ +L
Sbjct: 781 DEYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDL 840
Query: 54 VITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTV 94
+ A I++ G + DVF+VTD N Q + D + ++ T+
Sbjct: 841 SLQNAKIATLGERVEDVFFVTDANNQPLSDPELCARLQETI 881
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 21/164 (12%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIGD 83
E T I + + ++H + + LNL I A I+S + +D + V D +G IGD
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFTLDTYVVLDADGGSIGD 761
Query: 84 ---------QATISYIKTTVETNA-----------SFLNSMRSSVGVVPSKEYTSIELTG 123
+ I +K E F + + ++ + T +ELT
Sbjct: 762 NPARIKQIREGLIEALKNPDEYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTILELTA 821
Query: 124 TDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSS 167
DRPGLL+ + + + S+ +A+I T R + V D ++
Sbjct: 822 PDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANN 865
>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=glnD PE=3 SV=1
Length = 900
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 36/210 (17%)
Query: 232 NSRPHVTILDCSDRDY---TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRME-A 287
N P V I + + R++ T + I + D+ TV + + ++ ++T +
Sbjct: 686 NGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARILTSSSQFT 745
Query: 288 YQEYYIKHVDGFPISSEAER-QRVMACLEAA----------IERRASEGLE--------- 327
Y + DG PI + ER + + + L AA I+RR L+
Sbjct: 746 LDTYIVLEADGSPIGNNPERIEEIRSGLIAALRNPDDYLTIIQRRVPRQLKHFAFPPQVT 805
Query: 328 -----------LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASG 376
LE+ DR GLL+ + ++ ++ L ++ A+I+T+G +V+D FFVTDA
Sbjct: 806 IHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTDADN 865
Query: 377 NPV-DPKIVDSIQHQIGRTILQVKGNLNTP 405
P+ DP++ +Q I + + Q +P
Sbjct: 866 QPLSDPQLCLRLQQAIIKELQQENEQQPSP 895
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 14 PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
PP+V I ND T++++ + +R G+L V Q +D +L + A I++ G + DVF+V
Sbjct: 801 PPQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFV 860
Query: 74 TDINGQKIGD 83
TD + Q + D
Sbjct: 861 TDADNQPLSD 870
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 22/198 (11%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI-SSDGGYLMDVFYVTDINGQKIGD 83
E T I + + ++H + + LNL I A I +S + +D + V + +G IG+
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARILTSSSQFTLDTYIVLEADGSPIGN 761
Query: 84 QAT-ISYIKT----TVETNASFLNSMRSSV-------GVVPS--------KEYTSIELTG 123
I I++ + +L ++ V P + T +E+
Sbjct: 762 NPERIEEIRSGLIAALRNPDDYLTIIQRRVPRQLKHFAFPPQVTIHNDTQRPQTILEIIA 821
Query: 124 TDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKL 183
DRPGLL+ V + D SV +A+I T R + V D + + D + L++++
Sbjct: 822 PDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTD-ADNQPLSDPQLCLRLQQA 880
Query: 184 LCNVLRTNGDLRTPSMSI 201
+ L+ + + SI
Sbjct: 881 IIKELQQENEQQPSPSSI 898
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%)
Query: 14 PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
PP V+I N + TVI+V+ ++R G+L E+ L DL+L I A I++ G ++D FYV
Sbjct: 825 PPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 884
Query: 74 TDINGQKIGDQATISYI 90
D+ GQKI ++ +YI
Sbjct: 885 ADLVGQKISNENRRAYI 901
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIE 172
S ++T IE+ DRPGLLSE++AVL+DLS + SA I T + +V D G I
Sbjct: 835 SNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADL-VGQKIS 893
Query: 173 DQKRLLKIKKLLCNVLRTNGD---LRTPSMSISSA 204
++ R I L V+ D R PS I+ A
Sbjct: 894 NENRRAYITARLKAVMAGEEDEMRERMPSGIIAPA 928
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
DR GLLS+IT +L + L I+ A I+T G KV DTF+V D G +
Sbjct: 847 DRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADLVGQKI 892
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 206 VLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTV 265
VL G +RL +++ A R R + P V I + +T + + DRP LL +
Sbjct: 798 VLAGRKRLPEVI-ATRTKNRRKNKAFVIPPSVIITNSLSNKFTVIEVECLDRPGLLSEIT 856
Query: 266 CCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAI 318
L+D+ + + T + +Y+ + G IS+E R + A L+A +
Sbjct: 857 AVLSDLSLDIQSARITTFGEKVIDTFYVADLVGQKISNENRRAYITARLKAVM 909
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 14 PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
PPRV++DN + TVI+++ +R G L V + L D+ + I+ A +S+ G ++D FYV
Sbjct: 825 PPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYV 884
Query: 74 TDINGQKIGDQATISYIKTTVE 95
D+ G KI +A ++ I+ +E
Sbjct: 885 KDVFGMKIVHRAKLAQIREALE 906
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 25/221 (11%)
Query: 112 PSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAI 171
P + + + + D PGL S+++ + +++ A+I T + A + G AI
Sbjct: 722 PERAVSEVLVATDDHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQTLEGHAI 781
Query: 172 EDQKRLLKIKKLLCNVLRTNGDLR-TPSMSISSARVLHGERRLHQMLFADRDFERLDCVN 230
E ++R+ ++ K + +VL GDL ++ R+ R L
Sbjct: 782 EKEERIARLAKTVRDVL--TGDLPLEKALRRQPPRLPERTRHL----------------- 822
Query: 231 YNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQE 290
P V + + + + +T + I +DRP L+ LTD+ + V T
Sbjct: 823 -TVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDS 881
Query: 291 YYIKHVDGFPISSEAERQRVMACLEAAI----ERRASEGLE 327
+Y+K V G I A+ ++ LEAAI R+ EG E
Sbjct: 882 FYVKDVFGMKIVHRAKLAQIREALEAAITQTVPRKVEEGAE 922
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 24/159 (15%)
Query: 48 LVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVE----TNASFLNS 103
L +N++ K SDGG L D+F V + G I + I+ + TV + +
Sbjct: 749 LAGVNILDAKITTMSDGGAL-DIFTVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLEKA 807
Query: 104 MRSSVGVVP------------------SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVV 145
+R +P SK +T IE+ G DRPG L V+ LTD++ +
Sbjct: 808 LRRQPPRLPERTRHLTVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQIS 867
Query: 146 SAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLL 184
SA + T+ R +VKD G I + +L +I++ L
Sbjct: 868 SARVSTYGERVVDSFYVKD-VFGMKIVHRAKLAQIREAL 905
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASG 376
+E+ DR G L +TR L + + I A +ST G +V D+F+V D G
Sbjct: 841 IEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKDVFG 889
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%)
Query: 14 PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
PPRV+IDN+ TVI+V+ +R G+L ++ + L +L L I+ A IS+ G +DVFYV
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903
Query: 74 TDINGQKIGDQATISYIK 91
D+ G K+ + ++ I+
Sbjct: 904 KDVFGLKVTHENKLAQIR 921
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 24/207 (11%)
Query: 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKDQSSGCAI 171
+ T + + TD GL S ++ L +V A I+T N A + V+D + G A
Sbjct: 741 GRAITEVTIFATDHHGLFSRLAGALAAAGADIVDARIFTMTNGMALDVFTVQDAAGGGAF 800
Query: 172 EDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNY 231
E +L K+ ++ VL +G L+ P ++ + H R +
Sbjct: 801 ESGDKLAKLSVMIEKVL--SGQLK-PLHDLTKRKAPHASR----------------TRVF 841
Query: 232 NSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEY 291
+ P V I + + +T + + +DRP LL+D LT++ + + T +A +
Sbjct: 842 HVPPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVF 901
Query: 292 YIKHVDGFPISSEAE----RQRVMACL 314
Y+K V G ++ E + R+R++ L
Sbjct: 902 YVKDVFGLKVTHENKLAQIRERLLHAL 928
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASG 376
+E+ DR GLL D+TR L L I A+IST G K D F+V D G
Sbjct: 860 IEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKDVFG 908
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 36/210 (17%)
Query: 235 PHVTILDCSDRDY---TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRME-AYQE 290
P V I + + R++ T + I + D+ TV ++ + ++ ++T +
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDT 748
Query: 291 YYIKHVDGFPISSEAER-QRVMACLEAA----------IERRASEGLE------------ 327
Y + DG I +R +++ L A I+RR L+
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILN 808
Query: 328 --------LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
LE+ DR GLL+ + RI E+ L ++ A+I+T+G +V+D FF+TDA P+
Sbjct: 809 DAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPL 868
Query: 380 -DPKIVDSIQHQIGRTILQVKGNLNTPPKL 408
DP++ +Q I + + +G+ +P ++
Sbjct: 869 SDPQLCSRLQEAIVQQLQAGQGSDTSPTRV 898
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 14 PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
PP+V I ND T++++ + +R G+L + + ++ +L + A I++ G + DVF++
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 74 TDINGQKIGDQATISYIKTTV 94
TD + Q + D S ++ +
Sbjct: 861 TDADNQPLSDPQLCSRLQEAI 881
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 25/163 (15%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIGD 83
E T I + + ++H + + LNL I A I+S + +D + V D +G IGD
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 84 QATISYIKTTVETNASFLNSMRSSVGVV----------------------PSKEYTSIEL 121
+K + L + ++ + T +E+
Sbjct: 762 NP--QRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEI 819
Query: 122 TGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
T DRPGLL+ + + + S+ +A+I T R + + D
Sbjct: 820 TAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 38/235 (16%)
Query: 69 DVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIELTGTDRPG 128
DV + TD Q+ D + IK T T F T I + D+
Sbjct: 672 DVAWHTDAILQQPADGGPLVLIKET--TQREFEGG-------------TQIFIYAPDQHD 716
Query: 129 LLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQ-KRLLKIKKLLCNV 187
+ A ++ L+ ++ A I T +++ ++ + G +I D +R+ +I+ L
Sbjct: 717 FFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEA 776
Query: 188 LRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDY 247
LR D T I RV R+L F P VTIL+ + R
Sbjct: 777 LRNPEDYPT----IIQRRV---PRQLKHFDFP---------------PQVTILNDAQRPV 814
Query: 248 TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPIS 302
T + I + DRP LL + + + + T ++I D P+S
Sbjct: 815 TILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLS 869
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 36/213 (16%)
Query: 232 NSRPHVTILDCSDRDY---TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRME-A 287
+S P V I + + R++ T + I + D+ TV + + ++ ++T +
Sbjct: 686 DSGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFT 745
Query: 288 YQEYYIKHVDGFPISSEAER-----------QRVMACLEAAIERRASEGLE--------- 327
Y + DG I +R R A I+RR L+
Sbjct: 746 LDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRTPEDYPAIIQRRVPRQLKHFDFPPQVT 805
Query: 328 -----------LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASG 376
LE+ DR GLL+ I RI E+ + ++ A+I+T+G +V+D FF+TDA
Sbjct: 806 ILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITDADN 865
Query: 377 NPV-DPKIVDSIQHQIGRTILQVKGNLNTPPKL 408
P+ DP++ +Q I + + + + +P ++
Sbjct: 866 QPLSDPQLCSRLQEAIIQQLQAGQASEASPSRM 898
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 46/81 (56%)
Query: 14 PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
PP+V I ND T++++ + +R G+L + + ++ ++ + A I++ G + DVF++
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFI 860
Query: 74 TDINGQKIGDQATISYIKTTV 94
TD + Q + D S ++ +
Sbjct: 861 TDADNQPLSDPQLCSRLQEAI 881
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 25/163 (15%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIGD 83
E T I + + ++H + + LNL I A I+S + +D + V D +G IGD
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 84 QATISYIKTTVETNASFLNSMRSSVGVV----------------------PSKEYTSIEL 121
+K + L + ++ + T +E+
Sbjct: 762 NP--QRVKQIRDGLTEALRTPEDYPAIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEI 819
Query: 122 TGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
T DRPGLL+ + + + S+ +A+I T R + + D
Sbjct: 820 TAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITD 862
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 23/187 (12%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQ-K 175
T I + D+ + A + L+ ++ A I T +++ ++ + G +I D +
Sbjct: 705 TQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQ 764
Query: 176 RLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRP 235
R+ +I+ L LRT D P++ +RR+ + L +++ P
Sbjct: 765 RVKQIRDGLTEALRTPEDY--PAII---------QRRVPRQL-----------KHFDFPP 802
Query: 236 HVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKH 295
VTIL+ + R T + I + DRP LL + + + + T ++I
Sbjct: 803 QVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITD 862
Query: 296 VDGFPIS 302
D P+S
Sbjct: 863 ADNQPLS 869
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
PRV I+N + TVI+V+ ++R G+L E+ + DL+L I A+I++ G ++D FYVT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DINGQKIGDQATISYIK 91
D+ G KI + IK
Sbjct: 894 DLVGHKISNATRQGNIK 910
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 105 RSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
R + S ++T IE+ G DRPGLLSE++ +++DLS + SA I T + +V D
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD 894
Query: 165 QSSGCAIEDQKRLLKIKKLLCNVL------RTNGDLRTPSMS 200
G I + R IK+ L +L RTNG R+P +
Sbjct: 895 L-VGHKISNATRQGNIKRKLLALLGAENGARTNG--RSPQAA 933
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393
DR GLLS++T ++ + L I A I+T G KV D+F+VTD G+ + + Q I R
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNA---TRQGNIKR 911
Query: 394 TILQVKGNLN---TPPKLPQEPA 413
+L + G N T + PQ A
Sbjct: 912 KLLALLGAENGARTNGRSPQAAA 934
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
T I + D P LLS ++ ++V A+I+T S G A++
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFT-------------TSDGRALD---- 778
Query: 177 LLKIKKLLCNVLRTNGDLRTPSMSISSA--RVLHGERRLHQMLFADRDFERLDCVNYNSR 234
L+ T+ D R + + VL G+ L ML A R + +
Sbjct: 779 ----TILISREFDTDDDERRQAERVGKVIEDVLSGKAHLPDML-AKRTKPKKAARAFKVE 833
Query: 235 PHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIK 294
P V I + +T + + DRP LL + ++D+ + + T + +Y+
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 295 HVDGFPISSEAERQ 308
+ G IS+ A RQ
Sbjct: 894 DLVGHKISN-ATRQ 906
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
PRV I+N + TVI+V+ ++R G+L E+ + DL+L I A+I++ G ++D FYVT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DINGQKIGDQATISYIK 91
D+ G KI + IK
Sbjct: 894 DLVGHKISNATRQGNIK 910
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 105 RSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
R + S ++T IE+ G DRPGLLSE++ +++DLS + SA I T + +V D
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD 894
Query: 165 QSSGCAIEDQKRLLKIKKLLCNVL------RTNGDLRTPSMS 200
G I + R IK+ L +L RTNG R+P +
Sbjct: 895 L-VGHKISNATRQGNIKRKLLALLGAENGARTNG--RSPQAA 933
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393
DR GLLS++T ++ + L I A I+T G KV D+F+VTD G+ + + Q I R
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNA---TRQGNIKR 911
Query: 394 TILQVKGNLN---TPPKLPQEPA 413
+L + G N T + PQ A
Sbjct: 912 KLLALLGAENGARTNGRSPQAAA 934
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
T I + D P LLS ++ ++V A+I+T S G A++
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFT-------------TSDGRALD---- 778
Query: 177 LLKIKKLLCNVLRTNGDLRTPSMSISSA--RVLHGERRLHQMLFADRDFERLDCVNYNSR 234
L+ T+ D R + + VL G+ L ML A R + +
Sbjct: 779 ----TILISREFDTDDDERRRAERVGKVIEDVLSGKAHLPDML-AKRTKPKKAARAFKVE 833
Query: 235 PHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIK 294
P V I + +T + + DRP LL + ++D+ + + T + +Y+
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 295 HVDGFPISSEAERQ 308
+ G IS+ A RQ
Sbjct: 894 DLVGHKISN-ATRQ 906
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
PRV I+N + TVI+V+ ++R G+L E+ + DL+L I A+I++ G ++D FYVT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DINGQKIGDQATISYIK 91
D+ G KI + IK
Sbjct: 894 DLVGHKISNATRQGNIK 910
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 105 RSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
R + S ++T IE+ G DRPGLLSE++ +++DLS + SA I T + +V D
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD 894
Query: 165 QSSGCAIEDQKRLLKIKKLLCNVL------RTNGDLRTPSMS 200
G I + R IK+ L +L RTNG R+P +
Sbjct: 895 L-VGHKISNATRQGNIKRKLLALLGAENGARTNG--RSPQAA 933
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393
DR GLLS++T ++ + L I A I+T G KV D+F+VTD G+ + + Q I R
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNA---TRQGNIKR 911
Query: 394 TILQVKGNLN---TPPKLPQEPA 413
+L + G N T + PQ A
Sbjct: 912 KLLALLGAENGARTNGRSPQAAA 934
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
T I + D P LLS ++ ++V A+I+T S G A++
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFT-------------TSDGRALD---- 778
Query: 177 LLKIKKLLCNVLRTNGDLRTPSMSISSA--RVLHGERRLHQMLFADRDFERLDCVNYNSR 234
L+ T+ D R + + VL G+ L ML A R + +
Sbjct: 779 ----TILISREFDTDDDERRRAERVGKVIEDVLSGKAHLPDML-AKRTKPKKAARAFKVE 833
Query: 235 PHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIK 294
P V I + +T + + DRP LL + ++D+ + + T + +Y+
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 295 HVDGFPISSEAERQ 308
+ G IS+ A RQ
Sbjct: 894 DLVGHKISN-ATRQ 906
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
PRV I+N + TVI+V+ ++R G+L E+ + DL+L I A+I++ G ++D FYVT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DINGQKIGDQATISYIK 91
D+ G KI + IK
Sbjct: 894 DLVGHKISNATRQGNIK 910
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 105 RSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
R + S ++T IE+ G DRPGLLSE++ +++DLS + SA I T + +V D
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD 894
Query: 165 QSSGCAIEDQKRLLKIKKLLCNVL------RTNGDLRTPSMS 200
G I + R IK+ L +L RTNG R+P +
Sbjct: 895 L-VGHKISNATRQGNIKRKLLALLGAENGARTNG--RSPQAA 933
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393
DR GLLS++T ++ + L I A I+T G KV D+F+VTD G+ + + Q I R
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNA---TRQGNIKR 911
Query: 394 TILQVKGNLN---TPPKLPQEPA 413
+L + G N T + PQ A
Sbjct: 912 KLLALLGAENGARTNGRSPQAAA 934
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
T I + D P LLS ++ ++V A+I+T S G A++
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFT-------------TSDGRALD---- 778
Query: 177 LLKIKKLLCNVLRTNGDLRTPSMSISSA--RVLHGERRLHQMLFADRDFERLDCVNYNSR 234
L+ T+ D R + + VL G+ L ML A R + +
Sbjct: 779 ----TILISREFDTDDDERRRAERVGKVIEDVLSGKAHLPDML-AKRTKPKKAARAFKVE 833
Query: 235 PHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIK 294
P V I + +T + + DRP LL + ++D+ + + T + +Y+
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 295 HVDGFPISSEAERQ 308
+ G IS+ A RQ
Sbjct: 894 DLVGHKISN-ATRQ 906
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
PRV I+N + TVI+V+ ++R G+L E+ + DL+L I A+I++ G ++D FYVT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DINGQKIGDQATISYIK 91
D+ G KI + IK
Sbjct: 894 DLVGHKISNATRQGNIK 910
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 105 RSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
R + S ++T IE+ G DRPGLLSE++ +++DLS + SA I T + +V D
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD 894
Query: 165 QSSGCAIEDQKRLLKIKKLLCNVL------RTNGDLRTPSMS 200
G I + R IK+ L +L RTNG R+P +
Sbjct: 895 L-VGHKISNATRQGNIKRKLLALLGAENGARTNG--RSPQAA 933
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393
DR GLLS++T ++ + L I A I+T G KV D+F+VTD G+ + + Q I R
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNA---TRQGNIKR 911
Query: 394 TILQVKGNLN---TPPKLPQEPA 413
+L + G N T + PQ A
Sbjct: 912 KLLALLGAENGARTNGRSPQAAA 934
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
T I + D P LLS ++ ++V A+I+T S G A++
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFT-------------TSDGRALD---- 778
Query: 177 LLKIKKLLCNVLRTNGDLRTPSMSISSA--RVLHGERRLHQMLFADRDFERLDCVNYNSR 234
L+ T+ D R + + VL G+ L ML A R + +
Sbjct: 779 ----TILISREFDTDDDERRRAERVGKVIEDVLSGKAHLPDML-AKRTKPKKAARAFKVE 833
Query: 235 PHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIK 294
P V I + +T + + DRP LL + ++D+ + + T + +Y+
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 295 HVDGFPISSEAERQ 308
+ G IS+ A RQ
Sbjct: 894 DLVGHKISN-ATRQ 906
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
PRV I+N + TVI+V+ ++R G+L E+ + DL+L I A+I++ G ++D FYVT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DINGQKIGDQATISYIK 91
D+ G KI + IK
Sbjct: 894 DLVGHKISNATRQGNIK 910
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 105 RSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
R + S ++T IE+ G DRPGLLSE++ +++DLS + SA I T + +V D
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD 894
Query: 165 QSSGCAIEDQKRLLKIKKLLCNVL------RTNGDLRTPSMS 200
G I + R IK+ L +L RTNG R+P +
Sbjct: 895 L-VGHKISNATRQGNIKRKLLALLGAENGARTNG--RSPQAA 933
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393
DR GLLS++T ++ + L I A I+T G KV D+F+VTD G+ + + Q I R
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNA---TRQGNIKR 911
Query: 394 TILQVKGNLN---TPPKLPQEPA 413
+L + G N T + PQ A
Sbjct: 912 KLLALLGAENGARTNGRSPQAAA 934
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
T I + D P LLS ++ ++V A+I+T S G A++
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFT-------------TSDGRALD---- 778
Query: 177 LLKIKKLLCNVLRTNGDLRTPSMSISSA--RVLHGERRLHQMLFADRDFERLDCVNYNSR 234
L+ T+ D R + + VL G+ L ML A R + +
Sbjct: 779 ----TILISREFDTDDDERRRAERVGKVIEDVLSGKAHLPDML-AKRTKPKKAARAFKVE 833
Query: 235 PHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIK 294
P V I + +T + + DRP LL + ++D+ + + T + +Y+
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 295 HVDGFPISSEAERQ 308
+ G IS+ A RQ
Sbjct: 894 DLVGHKISN-ATRQ 906
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
PRV I+N + TVI+V+ ++R G+L E+ + DL+L I A+I++ G ++D FYVT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DINGQKIGDQATISYIK 91
D+ G KI + IK
Sbjct: 894 DLVGHKISNATRQGNIK 910
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 105 RSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
R + S ++T IE+ G DRPGLLSE++ +++DLS + SA I T + +V D
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD 894
Query: 165 QSSGCAIEDQKRLLKIKKLLCNVL------RTNGDLRTPSMS 200
G I + R IK+ L +L RTNG R+P +
Sbjct: 895 L-VGHKISNATRQGNIKRKLLALLGAENGARTNG--RSPQAA 933
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393
DR GLLS++T ++ + L I A I+T G KV D+F+VTD G+ + + Q I R
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNA---TRQGNIKR 911
Query: 394 TILQVKGNLN---TPPKLPQEPA 413
+L + G N T + PQ A
Sbjct: 912 KLLALLGAENGARTNGRSPQAAA 934
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 23/193 (11%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQK 175
T I + D P LLS ++ ++V A+I+T N RA + + + ++++
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSNGRALDTILISREFD-TDDDERR 794
Query: 176 RLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRP 235
R ++ K++ +VL +G P M A R + + P
Sbjct: 795 RAERVGKVIEDVL--SGKAHLPDM------------------LAKRTKPKKAARAFKVEP 834
Query: 236 HVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKH 295
V I + +T + + DRP LL + ++D+ + + T + +Y+
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD 894
Query: 296 VDGFPISSEAERQ 308
+ G IS+ A RQ
Sbjct: 895 LVGHKISN-ATRQ 906
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
PRV I+N + TVI+V+ ++R G+L E+ + DL+L I A+I++ G ++D FYVT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DINGQKIGDQATISYIK 91
D+ G KI + IK
Sbjct: 894 DLVGHKISNATRQGNIK 910
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 105 RSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
R + S ++T IE+ G DRPGLLSE++ +++DLS + SA I T + +V D
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD 894
Query: 165 QSSGCAIEDQKRLLKIKKLLCNVL------RTNGDLRTPSMS 200
G I + R IK+ L +L RTNG R+P +
Sbjct: 895 L-VGHKISNATRQGNIKRKLLALLGAENGARTNG--RSPQAA 933
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393
DR GLLS++T ++ + L I A I+T G KV D+F+VTD G+ + + Q I R
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNA---TRQGNIKR 911
Query: 394 TILQVKGNLN---TPPKLPQEPA 413
+L + G N T + PQ A
Sbjct: 912 KLLALLGAENGARTNGRSPQAAA 934
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
T I + D P LLS ++ ++V A+I+T S G A++
Sbjct: 736 TEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFT-------------TSDGRALD---- 778
Query: 177 LLKIKKLLCNVLRTNGDLRTPSMSISSA--RVLHGERRLHQMLFADRDFERLDCVNYNSR 234
L+ T+ D R + + VL G+ L ML A R + +
Sbjct: 779 ----TILISREFDTDDDERRRAERVGKVIEDVLSGKAHLPDML-AKRTKPKKAARAFKVE 833
Query: 235 PHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIK 294
P V I + +T + + DRP LL + ++D+ + + T + +Y+
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 295 HVDGFPISSEAERQ 308
+ G IS+ A RQ
Sbjct: 894 DLVGHKISN-ATRQ 906
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 14 PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
PP V I N + TVI+V+ ++R G+L E+ L DL+L I A I++ G ++D FYV
Sbjct: 824 PPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 883
Query: 74 TDINGQKI-GD 83
TD+ GQKI GD
Sbjct: 884 TDLVGQKISGD 894
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 102 NSMRSSVGVVP---------SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH 152
N +S V+P S ++T IE+ DRPGLLSE++AVL+DLS + SA I T
Sbjct: 814 NRKKSKAFVIPPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTF 873
Query: 153 NARAAALLHVKDQSSGCAIEDQKR 176
+ +V D D KR
Sbjct: 874 GEKVIDTFYVTDLVGQKISGDSKR 897
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
DR GLLS+IT +L + L I+ A I+T G KV DTF+VTD G +
Sbjct: 846 DRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQKI 891
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 22/209 (10%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQK 175
T I + D P LL+ ++ ++V A+I+T + RA +HV + + A ++ +
Sbjct: 727 TEITVLSPDHPRLLAVIAGACAAAGANIVDAQIFTTSDGRALDTIHVSREFTDDA-DELR 785
Query: 176 RLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRP 235
R I +++ +VL +G R P + + AR R + P
Sbjct: 786 RAATIGRMIEDVL--SGRKRLPEVIATRAR------------------NRKKSKAFVIPP 825
Query: 236 HVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKH 295
V I + +T + + DRP LL + L+D+ + + T + +Y+
Sbjct: 826 SVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTD 885
Query: 296 VDGFPISSEAERQRVMACLEAAIERRASE 324
+ G IS +++R + A ++A + E
Sbjct: 886 LVGQKISGDSKRANITARMKAVMAEEEDE 914
>sp|Q886P5|GLND_PSESM [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=glnD PE=3 SV=1
Length = 898
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV-DPKIVDS 386
LEL DR GLL+ I +I E+ L ++ A+I+T+G +V+D FF+TDA+ P+ DP++
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNQPLSDPQLCSQ 875
Query: 387 IQHQI 391
+Q I
Sbjct: 876 LQEAI 880
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 3 DEFAKLIRRMNP---------PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNL 53
D++ +I+R P P+V I ND TV+++ + +R G+L + + ++ +L
Sbjct: 780 DDYPTIIKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDL 839
Query: 54 VITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTV 94
+ A I++ G + DVF++TD N Q + D S ++ +
Sbjct: 840 SLQNAKIATLGERVEDVFFITDANNQPLSDPQLCSQLQEAI 880
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 30/198 (15%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIG- 82
E T I + + ++H + + LNL I A I+S + +D + V D G IG
Sbjct: 701 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDHEGGSIGN 760
Query: 83 --------------------DQATISYIKTTVETN-ASFLNSMRSSVGVVPSKEYTSIEL 121
D TI IK V F + + ++ + T +EL
Sbjct: 761 NPERIQDIRDGLTEALRNPDDYPTI--IKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLEL 818
Query: 122 TGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIK 181
DRPGLL+ + + + S+ +A+I T R + + D ++ + D + +++
Sbjct: 819 LAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITD-ANNQPLSDPQLCSQLQ 877
Query: 182 KLLCNVLRTN----GDLR 195
+ + L N GDLR
Sbjct: 878 EAIVKQLSVNSEPGGDLR 895
>sp|Q8DBG3|GLND_VIBVU [Protein-PII] uridylyltransferase OS=Vibrio vulnificus (strain
CMCP6) GN=glnD PE=3 SV=1
Length = 873
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 21/200 (10%)
Query: 8 LIRRMNP--PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI-SSDG 64
++R NP P V++ T + V + ++H + V+ L N + A I SS
Sbjct: 670 ILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVHDAQIMSSKD 729
Query: 65 GYLMDVFYVTDINGQKI---GDQATISYI--------KTTVETNASFLN----SMRSSVG 109
GY++D F V D +GQ I +A I ++ T V+T + +++ V
Sbjct: 730 GYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVLADGRPTKVKTRRTPYKLQHFKVKTKVD 789
Query: 110 VVP--SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSS 167
+P SK+ T +EL D PGLL+ A D+ ++ A+I T RA L + ++
Sbjct: 790 FLPTKSKKRTLMELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTSENG 849
Query: 168 GCAIEDQKRLLKIKKLLCNV 187
G E+Q+ L+ +KL+ N+
Sbjct: 850 GRLSEEQELQLR-EKLIHNI 868
>sp|Q7MIF8|GLND_VIBVY [Protein-PII] uridylyltransferase OS=Vibrio vulnificus (strain
YJ016) GN=glnD PE=3 SV=1
Length = 873
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 21/200 (10%)
Query: 8 LIRRMNP--PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI-SSDG 64
++R NP P V++ T + V + ++H + V+ L N + A I SS
Sbjct: 670 ILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVHDAQIMSSKD 729
Query: 65 GYLMDVFYVTDINGQKI---GDQATISYI--------KTTVETNASFLN----SMRSSVG 109
GY++D F V D +GQ I +A I ++ T V+T + +++ V
Sbjct: 730 GYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVLTDGRPTKVKTRRTPYKLQHFKVKTKVD 789
Query: 110 VVP--SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSS 167
+P SK+ T +EL D PGLL+ A D+ ++ A+I T RA L + ++
Sbjct: 790 FLPTKSKKRTLMELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTSENG 849
Query: 168 GCAIEDQKRLLKIKKLLCNV 187
G E+Q+ L+ +KL+ N+
Sbjct: 850 GRLSEEQELQLR-EKLIHNI 868
>sp|Q48F57|GLND_PSE14 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=glnD PE=3 SV=1
Length = 898
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV-DPKIVDS 386
LEL DR GLL+ I +I E+ L ++ A+I+T+G +V+D FF+TDA+ +P+ DP++
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCSQ 875
Query: 387 IQHQI 391
+Q I
Sbjct: 876 LQDAI 880
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 3 DEFAKLIRRMNP---------PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNL 53
D++ +I+R P P+V I ND TV+++ + +R G+L + + ++ +L
Sbjct: 780 DDYPTIIKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDL 839
Query: 54 VITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTV 94
+ A I++ G + DVF++TD N + D S ++ +
Sbjct: 840 SLQNAKIATLGERVEDVFFITDANNHPLSDPQLCSQLQDAI 880
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 21/164 (12%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIGD 83
E T I + + ++H + + LNL I A I+S + +D + V D G IGD
Sbjct: 701 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSKFTLDTYIVLDNEGGSIGD 760
Query: 84 QAT-------------------ISYIKTTVETN-ASFLNSMRSSVGVVPSKEYTSIELTG 123
+ IK V F + + ++ + T +EL
Sbjct: 761 NPERVQEIRNGLTEALRNPDDYPTIIKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELLA 820
Query: 124 TDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSS 167
DRPGLL+ + + + S+ +A+I T R + + D ++
Sbjct: 821 PDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANN 864
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 36/193 (18%)
Query: 235 PHVTILDCSDRDY---TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRME-AYQE 290
P V I + + R++ T + I + D+ TV ++ + ++ ++T +
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDT 748
Query: 291 YYIKHVDGFPISSEAER-QRVMACLEAA----------IERRASEGLE------------ 327
Y + DG I +R +++ L A I+RR L+
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFNFPPQVTILN 808
Query: 328 --------LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
LE+ DR GLL+ I RI E+ L ++ A+I+T+G +V+D FF+TDA P+
Sbjct: 809 DAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPL 868
Query: 380 -DPKIVDSIQHQI 391
DP++ +Q I
Sbjct: 869 SDPQLCSRLQEAI 881
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 14 PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
PP+V I ND T++++ + +R G+L + + ++ +L + A I++ G + DVF++
Sbjct: 801 PPQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 74 TDINGQKIGDQATISYIKTTV 94
TD + Q + D S ++ +
Sbjct: 861 TDADNQPLSDPQLCSRLQEAI 881
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 23/162 (14%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIGD 83
E T I + + ++H + + LNL I A I+S + +D + V D +G IGD
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 84 QAT-------------------ISYIKTTVETNASFLNSMRSSVGVV--PSKEYTSIELT 122
+ I+ V N V ++ + T +E+T
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFN-FPPQVTILNDAQRAVTILEIT 820
Query: 123 GTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
DRPGLL+ + + + S+ +A+I T R + + D
Sbjct: 821 APDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 23/187 (12%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQ-K 175
T I + D+ + A ++ L+ ++ A I T +++ ++ + G +I D +
Sbjct: 705 TQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQ 764
Query: 176 RLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRP 235
R+ +I+ L LR D P++ +RR+ + L ++N P
Sbjct: 765 RVKQIRDGLTEALRNPEDY--PTII---------QRRVPRQL-----------KHFNFPP 802
Query: 236 HVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKH 295
VTIL+ + R T + I + DRP LL + + + + T ++I
Sbjct: 803 QVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862
Query: 296 VDGFPIS 302
D P+S
Sbjct: 863 ADNQPLS 869
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
P V I N + TVI+V+ ++R G+L EV L DL+L I A+I++ G ++D FYVT
Sbjct: 831 PEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 75 DINGQKI 81
D+ G KI
Sbjct: 891 DLVGSKI 897
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIE 172
S ++T IE+ G DR GLLSEV+AVL+DLS + SA I T + +V D G I
Sbjct: 840 SNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDL-VGSKIT 898
Query: 173 DQKRLLKIKKLLCNVLRTNGD---LRTPSMSISS---ARVLHGER 211
+ R + I L VL D R PS I+ +RV HG +
Sbjct: 899 SENRQMNIAARLKAVLAGEVDEARERMPSGIIAPTPVSRVPHGSK 943
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
+E+ DR GLLS++T +L + L I A I+T G KV DTF+VTD G+ +
Sbjct: 846 IEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKI 897
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 22/212 (10%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQK 175
T I + D P LL+ ++ ++V A+I T + RA + V + S A ++ +
Sbjct: 733 TEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVNREFS-VAEDETR 791
Query: 176 RLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRP 235
R I KL+ +VL +G R P + S RV R + P
Sbjct: 792 RAASIGKLIEDVL--SGRKRLPEVIASRTRVKKRSR------------------AFTVTP 831
Query: 236 HVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKH 295
VTI + +T + + DR LL + L+D+ + + T + +Y+
Sbjct: 832 EVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTD 891
Query: 296 VDGFPISSEAERQRVMACLEAAIERRASEGLE 327
+ G I+SE + + A L+A + E E
Sbjct: 892 LVGSKITSENRQMNIAARLKAVLAGEVDEARE 923
>sp|Q4ZWT0|GLND_PSEU2 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=glnD PE=3 SV=1
Length = 898
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV-DPKIVDS 386
LEL DR GLL+ I +I E+ L ++ A+I+T+G +V+D FF+TDA+ +P+ DP++
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCRQ 875
Query: 387 IQHQI 391
+Q I
Sbjct: 876 LQDAI 880
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 3 DEFAKLIRRMNP---------PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNL 53
D++ +I+R P P+V I ND TV+++ + +R G+L + + ++ +L
Sbjct: 780 DDYPTIIKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDL 839
Query: 54 VITKAYISSDGGYLMDVFYVTDINGQKIGD 83
+ A I++ G + DVF++TD N + D
Sbjct: 840 SLQNAKIATLGERVEDVFFITDANNHPLSD 869
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 25/166 (15%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIG- 82
E T I + + ++H + + LNL I A I+S + +D + V D G IG
Sbjct: 701 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSKFTLDTYIVLDHEGGSIGN 760
Query: 83 --------------------DQATISYIKTTVETN-ASFLNSMRSSVGVVPSKEYTSIEL 121
D TI IK V F + + ++ + T +EL
Sbjct: 761 NPERIQDIREGLTEALRNPDDYPTI--IKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLEL 818
Query: 122 TGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSS 167
DRPGLL+ + + + S+ +A+I T R + + D ++
Sbjct: 819 LAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANN 864
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
P V I N + TVI+V+ ++R G+L EV L DL+L I A+I++ G ++D FYVT
Sbjct: 831 PEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 75 DINGQKI 81
D+ G KI
Sbjct: 891 DLVGSKI 897
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIE 172
S ++T IE+ G DR GLLSEV+AVL+DLS + SA I T + +V D G I
Sbjct: 840 SNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDL-VGSKIT 898
Query: 173 DQKRLLKIKKLLCNVLRTNGD---LRTPSMSISSA---RVLHGER 211
+ R + I L VL D R PS I+ R HG +
Sbjct: 899 SENRQMNIAARLKAVLAGEVDEARERMPSGIIAPTPVPRASHGSK 943
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
+E+ DR GLLS++T +L + L I A I+T G KV DTF+VTD G+ +
Sbjct: 846 IEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKI 897
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 22/212 (10%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQK 175
T I + D P LL+ ++ ++V A+I T + RA + V + S A ++ +
Sbjct: 733 TEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVNREFS-VAEDETR 791
Query: 176 RLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRP 235
R I KL+ +VL +G + P + S R R + P
Sbjct: 792 RAASIGKLIEDVL--SGRKKLPDVIASRTRSKKRSR------------------AFTVTP 831
Query: 236 HVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKH 295
VTI + +T + + DR LL + L+D+ + + T + +Y+
Sbjct: 832 EVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTD 891
Query: 296 VDGFPISSEAERQRVMACLEAAIERRASEGLE 327
+ G I+SE + + A L+A + E E
Sbjct: 892 LVGSKITSENRQMNIAARLKAVLAGEVDEARE 923
>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1
Length = 934
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
PRV I+N + TVI+V+ ++R G+L E+ + DL+L I A+I++ G ++D FYVT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DINGQKIGD 83
D+ G KI +
Sbjct: 894 DLVGHKISN 902
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIE 172
S ++T IE+ G DRPGLLSE++ +++DLS + SA I T + +V D G I
Sbjct: 843 SNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKIS 901
Query: 173 DQKRLLKIKKLLCNVLRTNGDLRTPSMSISSA 204
+ R I++ L VL +T S +A
Sbjct: 902 NATRQGNIRRKLLGVLSGENGSKTNGRSSQAA 933
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
DR GLLS++T ++ + L I A I+T G KV D+F+VTD G+ +
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKI 900
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
T I + D P LLS ++ ++V A+I+T A + + ++++R
Sbjct: 736 TEITVLAPDHPRLLSIITGACAAAGANIVDAQIFTTGDGRALDTILISREFDTDDDERRR 795
Query: 177 LLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPH 236
++ K++ +VL +G P + A R + + P
Sbjct: 796 AERVGKVIEDVL--SGKAHLPDV------------------LAKRTKPKRAAKAFKVEPR 835
Query: 237 VTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHV 296
V I + +T + + DRP LL + ++D+ + + T + +Y+ +
Sbjct: 836 VEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL 895
Query: 297 DGFPISSEAERQ 308
G IS+ A RQ
Sbjct: 896 VGHKISN-ATRQ 906
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 36/203 (17%)
Query: 235 PHVTILDCSDRDY---TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRME-AYQE 290
P V I + + R++ T + I + D+ TV ++ + ++ ++T +
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDT 748
Query: 291 YYIKHVDGFPISSEAER-QRVMACLEAA----------IERRASEGLE------------ 327
Y + DG I +R +++ L A I+RR L+
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILN 808
Query: 328 --------LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
LE+ DR GLL+ + RI E+ L ++ A+I+T+G +V+D FF+TDA P+
Sbjct: 809 DAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPL 868
Query: 380 -DPKIVDSIQHQIGRTILQVKGN 401
DP++ +Q I + + +G+
Sbjct: 869 SDPQLCSRLQEAIVQQLQAGQGS 891
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 14 PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
PP+V I ND T++++ + +R G+L + + ++ +L + A I++ G + DVF++
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 74 TDINGQKIGDQATISYIKTTV 94
TD + Q + D S ++ +
Sbjct: 861 TDADNQPLSDPQLCSRLQEAI 881
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 25/163 (15%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIGD 83
E T I + + ++H + + LNL I A I+S + +D + V D +G IGD
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 84 QATISYIKTTVETNASFLNSMRSSVGVV----------------------PSKEYTSIEL 121
+K + L + ++ + T +E+
Sbjct: 762 NP--QRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEI 819
Query: 122 TGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
T DRPGLL+ + + + S+ +A+I T R + + D
Sbjct: 820 TAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 38/235 (16%)
Query: 69 DVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIELTGTDRPG 128
DV + TD Q+ D + IK T T F T I + D+
Sbjct: 672 DVAWHTDAILQQPADGGPLVLIKET--TQREFEGG-------------TQIFIYAPDQHD 716
Query: 129 LLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQ-KRLLKIKKLLCNV 187
+ A ++ L+ ++ A I T +++ ++ + G +I D +R+ +I+ L
Sbjct: 717 FFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEA 776
Query: 188 LRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDY 247
LR D T I RV R+L F P VTIL+ + R
Sbjct: 777 LRNPEDYPT----IIQRRV---PRQLKHFDFP---------------PQVTILNDAQRPV 814
Query: 248 TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPIS 302
T + I + DRP LL + + + + T ++I D P+S
Sbjct: 815 TILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLS 869
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 36/203 (17%)
Query: 235 PHVTILDCSDRDY---TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRME-AYQE 290
P V I + + R++ T + I + D+ TV ++ + ++ ++T +
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDT 748
Query: 291 YYIKHVDGFPISSEAER-QRVMACLEAA----------IERRASEGLE------------ 327
Y + DG I +R +++ L A I+RR L+
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILN 808
Query: 328 --------LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
LE+ DR GLL+ + RI E+ L ++ A+I+T+G +V+D FF+TDA P+
Sbjct: 809 DAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPL 868
Query: 380 -DPKIVDSIQHQIGRTILQVKGN 401
DP++ +Q I + + +G+
Sbjct: 869 SDPQLCSRLQEAIVQQLQAGQGS 891
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 14 PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
PP+V I ND T++++ + +R G+L + + ++ +L + A I++ G + DVF++
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 74 TDINGQKIGDQATISYIKTTV 94
TD + Q + D S ++ +
Sbjct: 861 TDADNQPLSDPQLCSRLQEAI 881
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 25/163 (15%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIGD 83
E T I + + ++H + + LNL I A I+S + +D + V D +G IGD
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 84 QATISYIKTTVETNASFLNSMRSSVGVV----------------------PSKEYTSIEL 121
+K + L + ++ + T +E+
Sbjct: 762 NP--QRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEI 819
Query: 122 TGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
T DRPGLL+ + + + S+ +A+I T R + + D
Sbjct: 820 TAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862
Score = 32.3 bits (72), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 38/235 (16%)
Query: 69 DVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYTSIELTGTDRPG 128
DV + TD Q+ D + IK T T F T I + D+
Sbjct: 672 DVAWHTDAILQQPADGGPLVLIKET--TQREFEGG-------------TQIFIYAPDQHD 716
Query: 129 LLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQ-KRLLKIKKLLCNV 187
+ A ++ L+ ++ A I T +++ ++ + G +I D +R+ +I+ L
Sbjct: 717 FFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEA 776
Query: 188 LRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDY 247
LR D T I RV R+L F P VTIL+ + R
Sbjct: 777 LRNPEDYPT----IIQRRV---PRQLKHFDFP---------------PQVTILNDAQRPV 814
Query: 248 TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPIS 302
T + I + DRP LL + + + + T ++I D P+S
Sbjct: 815 TILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLS 869
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 14 PPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73
PP V I N + TVI+V+ ++R G+L ++ + DL+L I A I++ G ++D FYV
Sbjct: 826 PPSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYV 885
Query: 74 TDINGQKIGD---QATIS 88
TD+ GQK+ + QA+I+
Sbjct: 886 TDLFGQKVTNDNRQASIA 903
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
DR GLL+D+T ++ + L I A I+T G KV DTF+VTD G V
Sbjct: 848 DRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVTDLFGQKV 893
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
S ++T IE+ DRPGLL++++AV+ DLS + SA I T + +V D
Sbjct: 836 SNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVTD 887
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 206 VLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTV 265
VL G++RL +M+ A R R + P VTI + +T + + DRP LL D
Sbjct: 799 VLSGKQRLPEMI-ATRTKSRRKKSAFTIPPSVTISNGLSNKFTVIEVECLDRPGLLADMT 857
Query: 266 CCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASE 324
+ D+ ++ + T + +Y+ + G ++++ + + L+A + + E
Sbjct: 858 AVIADLSLDIHSARITTFGEKVIDTFYVTDLFGQKVTNDNRQASIAQRLKAVMSEQEDE 916
>sp|Q4KHH8|GLND_PSEF5 [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=glnD PE=3 SV=1
Length = 900
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV-DPKIVDS 386
LEL DR GLL+ I +I E+ L ++ A+I+T+G +V+D FF+TDA P+ DP++
Sbjct: 817 LELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDAHNQPLSDPQLCSR 876
Query: 387 IQHQI 391
+Q I
Sbjct: 877 LQDAI 881
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 3 DEFAKLIRRMNP---------PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNL 53
D++ +I+R P P V I ND TV+++ + +R G+L + + ++ +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPEVTIHNDAQRPVTVLELSAPDRPGLLARIGKIFLEFDL 840
Query: 54 VITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTV 94
+ A I++ G + DVF++TD + Q + D S ++ +
Sbjct: 841 SLQNAKIATLGERVEDVFFITDAHNQPLSDPQLCSRLQDAI 881
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 23/162 (14%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIGD 83
E T I + + ++H + + LNL I A I+S + +D + V D +G+ IG+
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDNDGESIGN 761
Query: 84 QAT-ISYIKTTVETNA--------------------SFLNSMRSSVGVVPSKEYTSIELT 122
+ I+ + T+A F + ++ + T +EL+
Sbjct: 762 NPQRVEQIRKGL-TDALRNPDDYPTIIQRRVPRQLKHFAFAPEVTIHNDAQRPVTVLELS 820
Query: 123 GTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
DRPGLL+ + + + S+ +A+I T R + + D
Sbjct: 821 APDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITD 862
>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis
(strain HTCC2594) GN=glnD PE=3 SV=1
Length = 919
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
PRV+ DND TVI+V++ +R +L + + L + +++ A+I++ G D FYVT
Sbjct: 825 PRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVT 884
Query: 75 DINGQKIGDQATISYIKTTVETNAS 99
D+ G KI D++ + I+ + AS
Sbjct: 885 DLTGAKITDESRMDTIRQALLDAAS 909
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/209 (18%), Positives = 84/209 (40%), Gaps = 21/209 (10%)
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
T + + D PGL ++ + +++ A I T A ++ G ++++
Sbjct: 727 TLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEERQ 786
Query: 177 LLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPH 236
L +I++ + + + G+L P + A R ++ ++ RP
Sbjct: 787 LARIEQAIADAIANRGEL-VPKL-------------------AKRPLKQTRAGAFDVRPR 826
Query: 237 VTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHV 296
V + + +T + + ++DR LL L + Q +V + A +Y+ +
Sbjct: 827 VLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDL 886
Query: 297 DGFPISSEAERQRV-MACLEAAIERRASE 324
G I+ E+ + A L+AA + R +E
Sbjct: 887 TGAKITDESRMDTIRQALLDAASDARQAE 915
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV-DPKIVDS 386
+E+ DR LL+ + R L E + ++ A I+ G + DTF+VTD +G + D +D+
Sbjct: 840 IEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDLTGAKITDESRMDT 899
Query: 387 IQHQI 391
I+ +
Sbjct: 900 IRQAL 904
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
P V I N + TVI+++ ++R G+L EV L DL+L I A I++ G ++D FYV
Sbjct: 826 PHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVI 885
Query: 75 DINGQKIGDQ 84
D+ GQKI ++
Sbjct: 886 DLVGQKITNE 895
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
+E+ DR GLL+++T +L + L I A I+T G KV DTF+V D G +
Sbjct: 841 IEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVIDLVGQKI 892
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 206 VLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTV 265
VL G++RL +++ A R R + +PHVTI + +T + I DR LL +
Sbjct: 798 VLAGKKRLPEVI-ATRTKGRKRNKTFTVKPHVTISNSLSNKFTVIEIECLDRIGLLAEVT 856
Query: 266 CCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASE 324
L D+ ++ + T + +Y+ + G I++E + + L+A + + E
Sbjct: 857 AVLADLSLDIHSARITTFGEKVIDTFYVIDLVGQKITNENRQGSISVRLKAVMSEQPDE 915
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 93 TVETNASFLNSMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH 152
TV+ + + NS+ S ++T IE+ DR GLL+EV+AVL DLS + SA I T
Sbjct: 823 TVKPHVTISNSL--------SNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTF 874
Query: 153 NARAAALLHVKD 164
+ +V D
Sbjct: 875 GEKVIDTFYVID 886
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 38/177 (21%)
Query: 248 TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAE 306
T V I KDRP L V + + + ++ ++T A+ + + +DG + + +
Sbjct: 699 TEVFIYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDGYAFDSFIVTELDGSLL--KFD 756
Query: 307 RQRVMACLEAAI----------ERRASEG----------------------LELELYTDD 334
R+RV LE AI + + SE E+EL+T D
Sbjct: 757 RRRV---LEKAIINSLNSNELTKLQGSENHKLQHFNVKTEVRFLNTEKTTHTEMELFTLD 813
Query: 335 RFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQI 391
+ GLL+D++ + E L I+ A+I+T+G K +D F +T+A G + + S+ ++
Sbjct: 814 KAGLLADVSLVFSELNLSIQNAKITTIGEKAQDFFILTNAKGEALSERERQSLSEKL 870
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 34/185 (18%)
Query: 17 VVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI-SSDGGYLMDVFYVTD 75
V I N T + + +R + L+V+ + + L I A I +S GY D F VT+
Sbjct: 688 VKISNRFSAGGTEVFIYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDGYAFDSFIVTE 747
Query: 76 ING-------QKIGDQATISYIKT-----------------TVETNASFLNSMRSSVGVV 111
++G +++ ++A I+ + + V+T FLN+ +++
Sbjct: 748 LDGSLLKFDRRRVLEKAIINSLNSNELTKLQGSENHKLQHFNVKTEVRFLNTEKTT---- 803
Query: 112 PSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAI 171
+T +EL D+ GLL++VS V ++L+ S+ +A+I T +A + + G A+
Sbjct: 804 ----HTEMELFTLDKAGLLADVSLVFSELNLSIQNAKITTIGEKAQDFF-ILTNAKGEAL 858
Query: 172 EDQKR 176
+++R
Sbjct: 859 SERER 863
>sp|P36223|GLND_AZOVI [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii GN=glnD
PE=3 SV=1
Length = 899
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 36/197 (18%)
Query: 235 PHVTILDCSDRDY---TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRME-AYQE 290
P V I + + R++ T + I + D+ TV + + ++ V+T +
Sbjct: 689 PLVLIKETTQREFEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDT 748
Query: 291 YYIKHVDGFPISSEAER-QRVMACLEAA----------IERRASEGLE------------ 327
Y + DG I + R Q + L A I+RR L+
Sbjct: 749 YIVLDADGGSIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQN 808
Query: 328 --------LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
LE+ DR GLL+ I +I ++ L ++ A+I+T+G +V+D FFVTDA P+
Sbjct: 809 DALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHNQPL 868
Query: 380 -DPKIVDSIQHQIGRTI 395
DP++ +Q I +
Sbjct: 869 SDPELCARLQLAIAEQL 885
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
P+V I ND T++++ + +R G+L + + +D +L + A I++ G + DVF+VT
Sbjct: 802 PQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVT 861
Query: 75 DINGQKIGD 83
D + Q + D
Sbjct: 862 DAHNQPLSD 870
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIGD 83
E AT I + + ++H + + LNL I A I+S + +D + V D +G IG+
Sbjct: 702 EGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGGSIGN 761
Query: 84 Q-ATISYIKT----TVETNASFLNSMRSSV-------GVVPS--------KEYTSIELTG 123
A I I+ + A + ++ V P + T +E+
Sbjct: 762 NPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQNDALRPVTILEIIA 821
Query: 124 TDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
DRPGLL+ + + D S+ +A+I T R + V D
Sbjct: 822 PDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTD 862
>sp|C1DSU8|GLND_AZOVD [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii (strain
DJ / ATCC BAA-1303) GN=glnD PE=3 SV=1
Length = 899
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 36/197 (18%)
Query: 235 PHVTILDCSDRDY---TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRME-AYQE 290
P V I + + R++ T + I + D+ TV + + ++ V+T +
Sbjct: 689 PLVLIKETTQREFEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDT 748
Query: 291 YYIKHVDGFPISSEAER-QRVMACLEAA----------IERRASEGLE------------ 327
Y + DG I + R Q + L A I+RR L+
Sbjct: 749 YIVLDADGGSIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQN 808
Query: 328 --------LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379
LE+ DR GLL+ I +I ++ L ++ A+I+T+G +V+D FFVTDA P+
Sbjct: 809 DALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHNQPL 868
Query: 380 -DPKIVDSIQHQIGRTI 395
DP++ +Q I +
Sbjct: 869 SDPELCARLQLAIAEQL 885
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
P+V I ND T++++ + +R G+L + + +D +L + A I++ G + DVF+VT
Sbjct: 802 PQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVT 861
Query: 75 DINGQKIGD 83
D + Q + D
Sbjct: 862 DAHNQPLSD 870
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIGD 83
E AT I + + ++H + + LNL I A I+S + +D + V D +G IG+
Sbjct: 702 EGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGGSIGN 761
Query: 84 Q-ATISYIKT----TVETNASFLNSMRSSV-------GVVPS--------KEYTSIELTG 123
A I I+ + A + ++ V P + T +E+
Sbjct: 762 NPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQNDALRPVTILEIIA 821
Query: 124 TDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
DRPGLL+ + + D S+ +A+I T R + V D
Sbjct: 822 PDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTD 862
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
P V I+N + TVI+V ++R G+L E+ + LNL I A++++ G DVFYVT
Sbjct: 836 PEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 895
Query: 75 DINGQKIGDQATISYIKTTV 94
D+ G +I S IK+ +
Sbjct: 896 DLLGAQINAPTRQSAIKSAL 915
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIE 172
S YT IE++G DRPGLL E++ ++ L+ ++ SA + T RA + +V D G I
Sbjct: 845 SDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDL-LGAQIN 903
Query: 173 DQKRLLKIKKLLCNVL 188
R IK L +V+
Sbjct: 904 APTRQSAIKSALTHVM 919
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 87/214 (40%), Gaps = 33/214 (15%)
Query: 107 SVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHV--- 162
+VG + T + + D P LLS ++ ++V A+I+T + RA + +
Sbjct: 729 NVGFDEVRGVTELTIFAADHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTISISRE 788
Query: 163 --KDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFAD 220
+D+ G +R +I +++ +VL G LR P + + R + + R
Sbjct: 789 YDRDEDEG------RRATRIGEMIEDVL--EGKLRLPE--VVARRTVRSKAR-------- 830
Query: 221 RDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTV 280
+ P VTI + YT + + DRP LL++ ++ + + V
Sbjct: 831 ---------PFVIEPEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHV 881
Query: 281 VTGRMEAYQEYYIKHVDGFPISSEAERQRVMACL 314
T A +Y+ + G I++ + + + L
Sbjct: 882 ATFGERARDVFYVTDLLGAQINAPTRQSAIKSAL 915
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVD 380
+E+ DR GLL ++T + + L I A ++T G + +D F+VTD G ++
Sbjct: 851 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQIN 903
>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2
Length = 283
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 35/202 (17%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
P+V+ID D AT++++ +R G LL+ + L +L L + KA + D +T
Sbjct: 77 PKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAIT 136
Query: 75 DIN-GQKIGDQATISYIKTTVETN-------ASFLNSMRSSVGVVPSKEYTSIELT---- 122
++ G+KIG+ + ++ T+ N AS ++ ++ G P E +++
Sbjct: 137 KLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHID 196
Query: 123 --------------GTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSG 168
DRPGLL ++ ++ D++ +V S E T A A HV +
Sbjct: 197 IYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKAKFHVSYRG-- 254
Query: 169 CAIEDQKRLLK-IKKLLCNVLR 189
K L+K ++++L N LR
Sbjct: 255 ------KPLIKALQQVLANSLR 270
>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. indica GN=OsI_027381 PE=1 SV=2
Length = 283
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 35/202 (17%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
P+V+ID D AT++++ +R G LL+ + L +L L + KA + D +T
Sbjct: 77 PKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAIT 136
Query: 75 DIN-GQKIGDQATISYIKTTVETN-------ASFLNSMRSSVGVVPSKEYTSIELT---- 122
++ G+KIG+ + ++ T+ N AS ++ ++ G P E +++
Sbjct: 137 KLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHID 196
Query: 123 --------------GTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSG 168
DRPGLL ++ ++ D++ +V S E T A A HV +
Sbjct: 197 IYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKAKFHVSYRG-- 254
Query: 169 CAIEDQKRLLK-IKKLLCNVLR 189
K L+K ++++L N LR
Sbjct: 255 ------KPLIKALQQVLANSLR 270
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 11 RMNP----PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGY 66
R+ P P+V+++N + TVI+V ++R G+L ++ + LNL I A++++ G
Sbjct: 829 RLRPFVVEPKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGER 888
Query: 67 LMDVFYVTDINGQKI 81
DVFYVTD+ G +I
Sbjct: 889 ARDVFYVTDLLGARI 903
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIE 172
S +T IE++G DRPGLL +++A ++ L+ ++ SA + T RA + +V D G I
Sbjct: 846 SDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTDL-LGARIT 904
Query: 173 DQKRLLKIKKLLCNVLRTNG 192
R IK+ L ++L G
Sbjct: 905 APTRQAAIKRALIHLLANGG 924
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 22/198 (11%)
Query: 107 SVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQS 166
+VG ++ T + + D P LLS ++ ++V A+I+T AL +
Sbjct: 729 NVGFDEARGVTELTIFAADHPWLLSIIAGACASAGANIVDAQIYT-TTDGQALDTIAISR 787
Query: 167 SGCAIEDQ-KRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFADRDFER 225
ED+ +R +I +++ V+ +G LR P + AR G+ RL +
Sbjct: 788 EYDRDEDEGRRAARIGEIIEQVI--DGRLRLPDV---VARRAAGKTRLRPFVV------- 835
Query: 226 LDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRM 285
P V + + +T + + DRP LLF ++ + + V T
Sbjct: 836 --------EPKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGE 887
Query: 286 EAYQEYYIKHVDGFPISS 303
A +Y+ + G I++
Sbjct: 888 RARDVFYVTDLLGARITA 905
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSI 387
+E+ DR GLL +T + + L I A ++T G + +D F+VTD G + +
Sbjct: 852 IEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTDLLGARI---TAPTR 908
Query: 388 QHQIGRTILQVKGN 401
Q I R ++ + N
Sbjct: 909 QAAIKRALIHLLAN 922
>sp|C3K5E4|GLND_PSEFS [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=glnD PE=3 SV=1
Length = 900
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV-DPKIVDS 386
LEL DR GLL+ I I E+ L ++ A+I+T+G +V+D FF+TDA P+ DP++
Sbjct: 817 LELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPELCRR 876
Query: 387 IQHQI 391
+Q I
Sbjct: 877 LQDAI 881
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 3 DEFAKLIRRMNP---------PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNL 53
D++ +I+R P P+V I ND TV+++ + +R G+L + ++ +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPQVTISNDAQRPVTVLELSAPDRPGLLARIGGIFLEFDL 840
Query: 54 VITKAYISSDGGYLMDVFYVTDINGQKIGD 83
+ A I++ G + DVF++TD + Q + D
Sbjct: 841 SLQNAKIATLGERVEDVFFITDADNQPLSD 870
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIGD 83
E T I + + ++H + + LNL I A I+S + +D + V D G+ IGD
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDTYIVLDTEGESIGD 761
Query: 84 QAT-ISYIK--------------TTVETNAS-----FLNSMRSSVGVVPSKEYTSIELTG 123
+ I+ T ++ F + + ++ + T +EL+
Sbjct: 762 NPVRVKKIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFAPQVTISNDAQRPVTVLELSA 821
Query: 124 TDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
DRPGLL+ + + + S+ +A+I T R + + D
Sbjct: 822 PDRPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFITD 862
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
P V I+N E TVI+V ++R G+L E+ + LNL I A++++ G DVFYVT
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 75 DINGQKIGDQATISYIKTTV 94
D+ G +I + IK+ +
Sbjct: 897 DLLGAQINAPTRQAAIKSAL 916
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIE 172
S+ YT IE++G DRPGLL E++ ++ L+ ++ SA + T RA + +V D G I
Sbjct: 846 SELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDL-LGAQIN 904
Query: 173 DQKRLLKIKKLLCNVLRTNGDLRTPS 198
R IK L ++L ++ P+
Sbjct: 905 APTRQAAIKSALLHLLASDDTAAQPA 930
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 32/214 (14%)
Query: 107 SVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHV--- 162
+VG P++ T + + D P LLS ++ ++V A+I+T + RA + +
Sbjct: 729 NVGFDPARGVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISRE 788
Query: 163 --KDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFAD 220
+D+ G +R +I + + VL G LR P + R G++ H+
Sbjct: 789 YERDEDEG------RRATRIGETIEQVL--EGKLRLPDAV--ARRTTRGKQ--HKA---- 832
Query: 221 RDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTV 280
++ P V+I + YT + + DRP LL++ ++ + + V
Sbjct: 833 ----------FSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHV 882
Query: 281 VTGRMEAYQEYYIKHVDGFPISSEAERQRVMACL 314
T A +Y+ + G I++ + + + L
Sbjct: 883 ATFGERARDVFYVTDLLGAQINAPTRQAAIKSAL 916
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 329 ELYTD------DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVD 380
ELYT DR GLL ++T + + L I A ++T G + +D F+VTD G ++
Sbjct: 847 ELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQIN 904
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
P V I+N E TVI+V ++R G+L E+ + LNL I A++++ G DVFYVT
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 75 DINGQKIGDQATISYIKTTV 94
D+ G +I + IK+ +
Sbjct: 897 DLLGAQINAPTRQAAIKSAL 916
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIE 172
S+ YT IE++G DRPGLL E++ ++ L+ ++ SA + T RA + +V D G I
Sbjct: 846 SELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDL-LGAQIN 904
Query: 173 DQKRLLKIKKLLCNVLRTNGDLRTPS 198
R IK L ++L + P+
Sbjct: 905 APTRQAAIKSALLHLLASEDAAAQPA 930
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 32/214 (14%)
Query: 107 SVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHV--- 162
+VG P++ T + + D P LLS ++ ++V A+I+T + RA + +
Sbjct: 729 NVGFDPARGVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISRE 788
Query: 163 --KDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFAD 220
+D+ G +R +I + + VL G LR P + R G++ H+
Sbjct: 789 YERDEDEG------RRATRIGETIEQVL--EGKLRLPDAV--ARRTTRGKQ--HKA---- 832
Query: 221 RDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTV 280
++ P V+I + YT + + DRP LL++ ++ + + V
Sbjct: 833 ----------FSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHV 882
Query: 281 VTGRMEAYQEYYIKHVDGFPISSEAERQRVMACL 314
T A +Y+ + G I++ + + + L
Sbjct: 883 ATFGERARDVFYVTDLLGAQINAPTRQAAIKSAL 916
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 329 ELYTD------DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVD 380
ELYT DR GLL ++T + + L I A ++T G + +D F+VTD G ++
Sbjct: 847 ELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQIN 904
>sp|Q4QJM6|GLND_HAEI8 [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
86-028NP) GN=glnD PE=3 SV=1
Length = 863
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 38/156 (24%)
Query: 60 ISSDGGYLMDVFYVTDINGQKIG-------DQATISYIKT-----------------TVE 95
I++ GY+ D F +T++NG+ + +QA +++ TV+
Sbjct: 720 ITTQDGYVFDSFIITELNGELVEFDRRRELEQALTLALQSEKLPALSIVPNRQLQHFTVQ 779
Query: 96 TNASFLNSMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNAR 155
T+ FL + KE+T +EL D+ GLL++VS + T+L+ ++++A+I T +
Sbjct: 780 TDVRFLQENK--------KEHTQMELVALDKAGLLAQVSQIFTELNLNLLNAKITTVGEK 831
Query: 156 AAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTN 191
A + +Q G A++ Q+R ++L NVL N
Sbjct: 832 AEDFFILTNQ-FGQALDSQQR-----EILRNVLYRN 861
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 318 IERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGN 377
++ E ++EL D+ GLL+ +++I E L + A+I+T+G K +D F +T+ G
Sbjct: 785 LQENKKEHTQMELVALDKAGLLAQVSQIFTELNLNLLNAKITTVGEKAEDFFILTNQFG- 843
Query: 378 PVDPKIVDSIQHQIGRTIL 396
+ +DS Q +I R +L
Sbjct: 844 ----QALDSQQREILRNVL 858
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQ 84
EH T +++ ++++ G+L +V Q +LNL + A I++ G D F +T+ GQ + Q
Sbjct: 791 EH-TQMELVALDKAGLLAQVSQIFTELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQ 849
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 10 RRMNP----PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGG 65
+R+ P P+V I+N + T+I+V ++R G+L ++ + LNL I A++++ G
Sbjct: 826 KRLRPFVVEPKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGE 885
Query: 66 YLMDVFYVTDINGQKI 81
DVFYVTD+ G +I
Sbjct: 886 RARDVFYVTDLLGARI 901
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIE 172
S +T IE++G DRPGLL +++ ++ L+ ++ SA + T RA + +V D G I
Sbjct: 844 SDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTDL-LGARIT 902
Query: 173 DQKRLLKIKKLLCNVL 188
R IK+ L ++L
Sbjct: 903 APTRQAAIKRALVHLL 918
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 33/203 (16%)
Query: 107 SVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH------NARAAALL 160
+VG ++ T + + D P LLS ++ ++V A+I+T + A +
Sbjct: 728 NVGFDEARGVTELTILAADHPWLLSIIAGACASAGANIVDAQIYTTTDGQALDTIAISRE 787
Query: 161 HVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFAD 220
+ +D+ G +R +I +++ VL G LR P + S A +RL +
Sbjct: 788 YERDEDEG------RRAARIAEIIEQVL--EGRLRLPDVMPSRA----AGKRLRPFVV-- 833
Query: 221 RDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTV 280
P VTI + +T + + DRP LLF ++ + + V
Sbjct: 834 -------------EPKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHV 880
Query: 281 VTGRMEAYQEYYIKHVDGFPISS 303
T A +Y+ + G I++
Sbjct: 881 ATFGERARDVFYVTDLLGARITA 903
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSI 387
+E+ DR GLL +T + + L I A ++T G + +D F+VTD G + +
Sbjct: 850 IEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGARI---TAPTR 906
Query: 388 QHQIGRTILQVKGNLNT 404
Q I R ++ + + NT
Sbjct: 907 QAAIKRALVHLLASGNT 923
>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1
Length = 874
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 20/196 (10%)
Query: 6 AKLIRRMNP--PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI-SS 62
A L+R +P P V+I T + V + ++ + V+ L N + A I +S
Sbjct: 668 AHLLRMDDPNKPLVLISKKATRGGTEVFVYTKDQPALFATVVAELDRRNFNVHDAQIMTS 727
Query: 63 DGGYLMDVFYVTDINGQKIGDQ---ATISY------------IKTTVETNASFLNSMRSS 107
G+++D F V D +G+ I + A I + IKT N ++++
Sbjct: 728 KDGHVIDTFMVLDQHGEAIDESRHAAVIKHLTHVLEAGRPTKIKTRRTPNKLQHFNVKTK 787
Query: 108 VGVVPSK--EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQ 165
V +P+K ++T +E D PGLL++V DL+ ++ A+I T RA L + +
Sbjct: 788 VDFLPTKGKKHTLMEFVALDTPGLLAKVGRTFADLNINLHGAKITTIGERAEDLFILTSE 847
Query: 166 SSGCAIEDQKRLLKIK 181
+ G E+Q+ L+ K
Sbjct: 848 AGGRLSEEQQNELRDK 863
>sp|Q3KHB4|GLND_PSEPF [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf0-1) GN=glnD PE=3 SV=1
Length = 900
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV-DPKIVDS 386
LEL DR GLL+ + I E+ L ++ A+I+T+G +V+D FF+TDA P+ DP +
Sbjct: 817 LELTAPDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFITDAHNQPLSDPLLCSR 876
Query: 387 IQHQI 391
+Q I
Sbjct: 877 LQDAI 881
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74
P+V I ND TV+++ + +R G+L V ++ +L + A I++ G + DVF++T
Sbjct: 802 PQVTIHNDAQRPVTVLELTAPDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Query: 75 DINGQKIGDQATISYIKTTV 94
D + Q + D S ++ +
Sbjct: 862 DAHNQPLSDPLLCSRLQDAI 881
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKA-YISSDGGYLMDVFYVTDINGQKIGD 83
E T I + + ++H + + LNL I A I+S + +D + V D +G IGD
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDTYIVLDTDGDSIGD 761
Query: 84 QAT-ISYIK---TTVETNAS----------------FLNSMRSSVGVVPSKEYTSIELTG 123
+ I+ T N + F + + ++ + T +ELT
Sbjct: 762 NPVRVKQIRDGLTEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELTA 821
Query: 124 TDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164
DRPGLL+ V + + S+ +A+I T R + + D
Sbjct: 822 PDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFITD 862
>sp|A7N1X9|GLND_VIBHB [Protein-PII] uridylyltransferase OS=Vibrio harveyi (strain ATCC
BAA-1116 / BB120) GN=glnD PE=3 SV=1
Length = 874
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 18/185 (9%)
Query: 15 PRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYI-SSDGGYLMDVFYV 73
P V+I T + V S ++ + V+ L N + A I +S GY++D F V
Sbjct: 679 PLVLISKKATRGGTEVFVYSPDQPALFATVVAELDRRNFNVHDAQIMTSKDGYVLDTFMV 738
Query: 74 TDINGQKI--GDQATISY-------------IKTTVETNASFLNSMRSSVGVVP--SKEY 116
D +G+ I G + ++ IKT N ++++ V +P SK+
Sbjct: 739 LDQHGKAIEEGRHSAVTKHITHVLEDGRPTKIKTRRTPNKLQHFNVKTKVDFLPTKSKKR 798
Query: 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKR 176
T +E D PGLL++V DL ++ +A+I T RA L + ++ G E+Q+
Sbjct: 799 TLMEFVALDTPGLLAKVGRTFADLGINLHAAKITTIGERAEDLFILTSEAGGRLSEEQQT 858
Query: 177 LLKIK 181
L+ K
Sbjct: 859 ELREK 863
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 33/176 (18%)
Query: 233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVT---------- 282
S+P V I + R T V + S D+P L V L + V+ ++T
Sbjct: 677 SKPLVLISKKATRGGTEVFVYSPDQPALFATVVAELDRRNFNVHDAQIMTSKDGYVLDTF 736
Query: 283 ------------GRMEAYQEYYIKHV--DGFPISSEAERQ-------RVMACLEAAIERR 321
GR A ++ I HV DG P + R V ++ +
Sbjct: 737 MVLDQHGKAIEEGRHSAVTKH-ITHVLEDGRPTKIKTRRTPNKLQHFNVKTKVDFLPTKS 795
Query: 322 ASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGN 377
L +E D GLL+ + R + G+ + A+I+T+G + +D F +T +G
Sbjct: 796 KKRTL-MEFVALDTPGLLAKVGRTFADLGINLHAAKITTIGERAEDLFILTSEAGG 850
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 6 AKLIRRMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGG 65
AKL + P V I+N+ + TVI+V ++R G+L ++ + LNL I A++++ G
Sbjct: 826 AKLRAFVVEPEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGE 885
Query: 66 YLMDVFYVTDINGQKI 81
DVFYVTD+ G +I
Sbjct: 886 RARDVFYVTDLLGAQI 901
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIE 172
S YT IE++G DRPGLL +++ ++ L+ ++ SA + T RA + +V D G I
Sbjct: 844 SDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDL-LGAQIT 902
Query: 173 DQKRLLKIKKLLCNVLRTNGD 193
R IK+ L ++L NGD
Sbjct: 903 APTRQAAIKRALVHLL-ANGD 922
Score = 38.9 bits (89), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 30/203 (14%)
Query: 107 SVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW-THNARAAALLHV--- 162
+VG ++ T + + D P LLS ++ ++V A+I+ T + RA + +
Sbjct: 725 NVGFDEARAVTELTILAVDHPWLLSVIAGACASAGANIVDAQIYTTTDGRALDTISISRE 784
Query: 163 --KDQSSGCAIEDQKRLLKIKKLLCNVLRTNGDLRTPSMSISSARVLHGERRLHQMLFAD 220
+D+ G +R +I + + VL G LR P + R G + + +
Sbjct: 785 YDRDEDEG------RRATRIGETIEEVL--EGKLRLPEA--VARRASSGSKAKLRAFVVE 834
Query: 221 RDFERLDCVNYNSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTV 280
+ E +N N SDR YT + + DRP LL+ ++ + + V
Sbjct: 835 PEVE----INNN---------WSDR-YTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHV 880
Query: 281 VTGRMEAYQEYYIKHVDGFPISS 303
T A +Y+ + G I++
Sbjct: 881 ATFGERARDVFYVTDLLGAQITA 903
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSI 387
+E+ DR GLL +T + + L I A ++T G + +D F+VTD G + +
Sbjct: 850 IEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQI---TAPTR 906
Query: 388 QHQIGRTILQVKGNLNTPPK 407
Q I R ++ + N + K
Sbjct: 907 QAAIKRALVHLLANGDAAEK 926
>sp|A5UBF9|GLND_HAEIE [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
PittEE) GN=glnD PE=3 SV=1
Length = 863
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 38/156 (24%)
Query: 60 ISSDGGYLMDVFYVTDINGQKIG-------DQATISYIKT-----------------TVE 95
I++ GY+ D F +T++NG+ + +QA +++ TV+
Sbjct: 720 ITTQDGYVFDSFIITELNGELVEFDRRRELEQALTLALQSEKLSALSITPNRQLQHFTVQ 779
Query: 96 TNASFLNSMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNAR 155
T+ FL+ + KE+T +EL D+ GLL++VS + ++L+ ++++A+I T +
Sbjct: 780 TDVRFLHENK--------KEHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITTVGEK 831
Query: 156 AAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTN 191
A + +Q G A++ Q+R ++L NVL N
Sbjct: 832 AEDFFILTNQ-FGQALDSQQR-----EILRNVLYRN 861
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 318 IERRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGN 377
+ E E+EL D+ GLL+ +++I E L + A+I+T+G K +D F +T+ G
Sbjct: 785 LHENKKEHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILTNQFG- 843
Query: 378 PVDPKIVDSIQHQIGRTIL 396
+ +DS Q +I R +L
Sbjct: 844 ----QALDSQQREILRNVL 858
Score = 32.0 bits (71), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQ 84
EH T +++ ++++ G+L +V Q +LNL + A I++ G D F +T+ GQ + Q
Sbjct: 791 EH-TEMELVALDKAGLLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQ 849
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,167,613
Number of Sequences: 539616
Number of extensions: 6194226
Number of successful extensions: 15715
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 14961
Number of HSP's gapped (non-prelim): 705
length of query: 437
length of database: 191,569,459
effective HSP length: 120
effective length of query: 317
effective length of database: 126,815,539
effective search space: 40200525863
effective search space used: 40200525863
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)