Query 013722
Match_columns 437
No_of_seqs 311 out of 1914
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:43:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 3.9E-28 8.5E-33 269.4 23.2 163 232-395 662-853 (854)
2 PRK05007 PII uridylyl-transfer 100.0 5.3E-28 1.1E-32 269.2 23.3 163 233-396 687-879 (884)
3 COG2844 GlnD UTP:GlnB (protein 100.0 2.9E-27 6.4E-32 249.8 20.0 166 232-398 669-864 (867)
4 PRK01759 glnD PII uridylyl-tra 99.9 2.5E-26 5.5E-31 255.0 25.3 176 11-189 661-854 (854)
5 PRK05007 PII uridylyl-transfer 99.9 6.9E-26 1.5E-30 252.3 25.8 175 13-190 687-880 (884)
6 PRK00275 glnD PII uridylyl-tra 99.9 1.3E-25 2.8E-30 250.1 24.1 168 233-400 687-890 (895)
7 PRK00275 glnD PII uridylyl-tra 99.9 7E-25 1.5E-29 244.3 26.6 180 12-192 686-889 (895)
8 PRK04374 PII uridylyl-transfer 99.9 4.8E-25 1E-29 244.2 23.8 162 233-397 675-868 (869)
9 TIGR01693 UTase_glnD [Protein- 99.9 1.2E-24 2.6E-29 242.7 23.3 163 233-395 654-849 (850)
10 TIGR01693 UTase_glnD [Protein- 99.9 9.3E-24 2E-28 235.6 25.4 175 12-188 653-849 (850)
11 PRK03381 PII uridylyl-transfer 99.9 7.2E-24 1.6E-28 233.3 22.5 154 233-392 586-773 (774)
12 PRK04374 PII uridylyl-transfer 99.9 1.5E-23 3.3E-28 232.3 25.0 175 13-189 675-867 (869)
13 PRK03059 PII uridylyl-transfer 99.9 9.2E-24 2E-28 234.4 22.9 158 233-394 664-853 (856)
14 PRK03059 PII uridylyl-transfer 99.9 2.2E-23 4.9E-28 231.3 25.6 173 12-189 663-855 (856)
15 PRK05092 PII uridylyl-transfer 99.9 2.9E-23 6.3E-28 233.2 25.8 179 13-192 718-918 (931)
16 PRK03381 PII uridylyl-transfer 99.9 3.1E-23 6.6E-28 228.3 23.9 169 13-185 586-773 (774)
17 PRK05092 PII uridylyl-transfer 99.9 3.7E-23 8E-28 232.3 24.7 165 233-397 718-916 (931)
18 COG2844 GlnD UTP:GlnB (protein 99.9 2.2E-23 4.7E-28 220.7 21.0 177 12-191 669-864 (867)
19 cd04895 ACT_ACR_1 ACT domain-c 99.8 2.1E-20 4.5E-25 144.7 10.2 68 326-393 2-70 (72)
20 cd04897 ACT_ACR_3 ACT domain-c 99.8 2.6E-20 5.7E-25 145.2 9.9 70 326-395 2-72 (75)
21 cd04896 ACT_ACR-like_3 ACT dom 99.8 2.3E-19 4.9E-24 139.9 9.8 70 326-396 1-73 (75)
22 cd04897 ACT_ACR_3 ACT domain-c 99.7 7.5E-17 1.6E-21 125.8 10.6 73 116-189 1-73 (75)
23 cd04895 ACT_ACR_1 ACT domain-c 99.7 1.8E-16 3.9E-21 122.8 10.4 69 116-185 1-69 (72)
24 cd04896 ACT_ACR-like_3 ACT dom 99.7 9.1E-16 2E-20 119.7 10.1 72 117-190 1-74 (75)
25 cd04925 ACT_ACR_2 ACT domain-c 99.6 9.3E-15 2E-19 114.6 10.4 73 117-190 1-74 (74)
26 PRK11589 gcvR glycine cleavage 99.6 3.1E-14 6.7E-19 131.2 15.3 157 24-190 5-168 (190)
27 cd04925 ACT_ACR_2 ACT domain-c 99.6 8.4E-15 1.8E-19 114.9 10.0 70 326-395 1-72 (74)
28 cd04927 ACT_ACR-like_2 Second 99.6 1.1E-14 2.4E-19 114.8 10.4 69 327-395 2-71 (76)
29 cd04900 ACT_UUR-like_1 ACT dom 99.6 2.7E-14 5.8E-19 111.7 10.2 69 326-394 2-72 (73)
30 cd04900 ACT_UUR-like_1 ACT dom 99.5 6.2E-14 1.3E-18 109.6 10.7 69 28-96 2-71 (73)
31 cd04927 ACT_ACR-like_2 Second 99.5 3E-13 6.5E-18 106.6 10.7 71 118-190 2-73 (76)
32 PRK11589 gcvR glycine cleavage 99.5 1.7E-12 3.7E-17 119.7 15.0 121 244-371 5-143 (190)
33 cd04928 ACT_TyrKc Uncharacteri 99.4 1.6E-12 3.6E-17 99.4 9.9 52 28-79 2-54 (68)
34 cd04928 ACT_TyrKc Uncharacteri 99.4 2.6E-12 5.7E-17 98.3 9.9 64 248-317 2-66 (68)
35 cd04926 ACT_ACR_4 C-terminal 99.4 6.3E-12 1.4E-16 98.0 10.4 69 325-393 1-69 (72)
36 cd04926 ACT_ACR_4 C-terminal 99.3 1.9E-11 4.1E-16 95.3 10.4 68 28-96 2-69 (72)
37 COG2716 GcvR Glycine cleavage 99.3 8.7E-12 1.9E-16 110.4 9.4 157 25-192 3-166 (176)
38 PRK00227 glnD PII uridylyl-tra 99.3 4E-11 8.7E-16 130.0 14.8 144 28-190 547-692 (693)
39 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 5.3E-11 1.1E-15 91.7 10.6 69 326-394 1-69 (70)
40 PRK00227 glnD PII uridylyl-tra 99.3 4.1E-11 8.9E-16 129.9 12.8 135 248-394 547-689 (693)
41 cd04899 ACT_ACR-UUR-like_2 C-t 99.1 3.8E-10 8.3E-15 86.8 10.1 70 117-188 1-70 (70)
42 COG2716 GcvR Glycine cleavage 99.0 1.3E-09 2.7E-14 96.8 9.1 129 244-380 2-149 (176)
43 cd04873 ACT_UUR-ACR-like ACT d 98.9 9.2E-09 2E-13 78.7 10.6 69 326-394 1-69 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 98.8 4.1E-08 9E-13 75.0 10.1 70 117-188 1-70 (70)
45 PF13740 ACT_6: ACT domain; PD 98.7 2E-07 4.4E-12 73.3 9.8 67 116-190 2-68 (76)
46 COG4747 ACT domain-containing 98.7 8E-07 1.7E-11 74.0 13.6 125 249-396 5-131 (142)
47 COG4747 ACT domain-containing 98.6 1.1E-06 2.4E-11 73.2 13.1 114 28-164 4-118 (142)
48 PF13740 ACT_6: ACT domain; PD 98.6 7.7E-07 1.7E-11 70.0 10.4 64 27-97 2-65 (76)
49 cd04894 ACT_ACR-like_1 ACT dom 98.5 3.5E-07 7.7E-12 67.4 6.6 67 28-97 1-67 (69)
50 cd04870 ACT_PSP_1 CT domains f 98.4 8.5E-07 1.9E-11 69.5 6.9 66 118-190 1-66 (75)
51 cd04893 ACT_GcvR_1 ACT domains 98.4 1.9E-06 4E-11 68.0 8.6 62 28-96 2-63 (77)
52 PF01842 ACT: ACT domain; Int 98.3 2.7E-06 5.9E-11 64.0 8.0 38 117-154 1-38 (66)
53 PF01842 ACT: ACT domain; Int 98.3 4.1E-06 9E-11 63.0 8.8 63 326-393 1-63 (66)
54 cd04893 ACT_GcvR_1 ACT domains 98.3 4.8E-06 1E-10 65.6 8.5 63 117-187 2-64 (77)
55 cd04870 ACT_PSP_1 CT domains f 98.3 4.4E-06 9.5E-11 65.4 7.8 50 327-376 1-50 (75)
56 PRK07431 aspartate kinase; Pro 98.2 0.0021 4.5E-08 69.8 28.6 283 34-395 278-580 (587)
57 cd04872 ACT_1ZPV ACT domain pr 98.1 9.5E-06 2.1E-10 65.5 6.4 68 117-190 2-69 (88)
58 PRK00194 hypothetical protein; 98.0 1.9E-05 4.2E-10 63.9 6.7 66 116-187 3-68 (90)
59 cd04869 ACT_GcvR_2 ACT domains 98.0 2.9E-05 6.4E-10 61.3 7.5 64 118-188 1-70 (81)
60 cd04872 ACT_1ZPV ACT domain pr 98.0 2.5E-05 5.4E-10 63.1 6.8 49 28-76 2-50 (88)
61 cd04894 ACT_ACR-like_1 ACT dom 97.9 4.2E-05 9.1E-10 56.6 6.3 68 117-188 1-68 (69)
62 cd04875 ACT_F4HF-DF N-terminal 97.9 7.6E-05 1.6E-09 58.1 8.3 34 29-62 1-34 (74)
63 PRK00194 hypothetical protein; 97.9 5.3E-05 1.1E-09 61.3 7.5 48 27-74 3-50 (90)
64 cd04875 ACT_F4HF-DF N-terminal 97.9 7.1E-05 1.5E-09 58.2 7.8 67 118-188 1-67 (74)
65 cd04869 ACT_GcvR_2 ACT domains 97.9 9.5E-05 2.1E-09 58.3 8.5 48 29-76 1-54 (81)
66 PF13291 ACT_4: ACT domain; PD 97.9 0.00015 3.3E-09 57.1 9.7 64 115-185 5-70 (80)
67 TIGR00655 PurU formyltetrahydr 97.8 0.00082 1.8E-08 66.0 15.4 113 29-149 2-117 (280)
68 PRK13010 purU formyltetrahydro 97.8 0.0007 1.5E-08 66.8 14.5 118 26-150 8-127 (289)
69 PRK06027 purU formyltetrahydro 97.6 0.0014 3.1E-08 64.6 14.7 67 26-97 5-73 (286)
70 PF13291 ACT_4: ACT domain; PD 97.6 0.0004 8.6E-09 54.8 8.8 63 326-393 7-71 (80)
71 COG3830 ACT domain-containing 97.6 9.9E-05 2.1E-09 59.1 4.5 69 116-190 3-71 (90)
72 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00072 1.6E-08 52.2 9.5 60 119-185 2-62 (74)
73 PRK13011 formyltetrahydrofolat 97.5 0.0026 5.7E-08 62.7 14.3 115 26-149 6-122 (286)
74 PRK06027 purU formyltetrahydro 97.4 0.00052 1.1E-08 67.7 8.5 69 115-189 5-75 (286)
75 cd04887 ACT_MalLac-Enz ACT_Mal 97.4 0.0017 3.7E-08 50.0 9.4 61 328-393 2-63 (74)
76 COG3830 ACT domain-containing 97.4 0.00029 6.2E-09 56.5 4.6 47 27-73 3-49 (90)
77 cd04886 ACT_ThrD-II-like C-ter 97.2 0.0031 6.7E-08 47.7 9.0 60 119-185 1-65 (73)
78 PRK13010 purU formyltetrahydro 97.2 0.0061 1.3E-07 60.2 13.3 106 247-358 9-126 (289)
79 PRK13011 formyltetrahydrofolat 97.2 0.0017 3.6E-08 64.1 9.3 69 115-190 6-76 (286)
80 PRK06737 acetolactate synthase 97.1 0.0039 8.4E-08 48.9 8.9 64 117-187 3-67 (76)
81 cd04877 ACT_TyrR N-terminal AC 97.1 0.0027 5.8E-08 49.3 8.1 59 327-393 2-60 (74)
82 cd04898 ACT_ACR-like_4 ACT dom 97.1 0.00066 1.4E-08 52.3 4.4 66 327-393 2-72 (77)
83 cd04908 ACT_Bt0572_1 N-termina 97.1 0.0033 7.2E-08 47.6 8.4 44 327-372 3-46 (66)
84 TIGR00655 PurU formyltetrahydr 97.1 0.015 3.2E-07 57.3 14.9 104 249-358 2-117 (280)
85 cd04889 ACT_PDH-BS-like C-term 97.1 0.0017 3.7E-08 47.4 6.2 46 328-373 1-47 (56)
86 cd04909 ACT_PDH-BS C-terminal 97.1 0.0046 9.9E-08 47.0 8.7 62 327-395 3-66 (69)
87 cd04908 ACT_Bt0572_1 N-termina 97.1 0.0044 9.6E-08 46.9 8.5 46 117-164 2-47 (66)
88 cd04877 ACT_TyrR N-terminal AC 97.0 0.0045 9.7E-08 48.1 8.5 58 118-185 2-59 (74)
89 cd04888 ACT_PheB-BS C-terminal 97.0 0.0051 1.1E-07 47.5 8.9 61 118-185 2-64 (76)
90 COG0788 PurU Formyltetrahydrof 97.0 0.003 6.6E-08 60.4 8.7 66 26-96 6-73 (287)
91 PRK08178 acetolactate synthase 97.0 0.0048 1E-07 50.4 8.6 67 115-189 7-74 (96)
92 cd04878 ACT_AHAS N-terminal AC 97.0 0.0064 1.4E-07 45.8 9.0 61 327-393 2-64 (72)
93 cd04886 ACT_ThrD-II-like C-ter 97.0 0.0066 1.4E-07 45.8 9.0 62 328-394 1-67 (73)
94 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.0 0.0059 1.3E-07 46.9 8.8 62 327-393 2-65 (79)
95 CHL00100 ilvH acetohydroxyacid 97.0 0.0044 9.5E-08 56.5 9.1 66 117-190 3-70 (174)
96 cd04909 ACT_PDH-BS C-terminal 96.9 0.0069 1.5E-07 46.0 8.7 47 117-163 2-50 (69)
97 cd04889 ACT_PDH-BS-like C-term 96.9 0.0029 6.2E-08 46.2 6.1 46 119-164 1-47 (56)
98 PRK06737 acetolactate synthase 96.9 0.0052 1.1E-07 48.2 7.7 67 326-399 3-71 (76)
99 cd04905 ACT_CM-PDT C-terminal 96.9 0.0065 1.4E-07 47.9 8.5 66 326-393 2-68 (80)
100 PRK13562 acetolactate synthase 96.9 0.0069 1.5E-07 48.3 8.3 65 117-188 3-69 (84)
101 PRK08178 acetolactate synthase 96.8 0.006 1.3E-07 49.8 7.6 69 325-399 8-76 (96)
102 cd04878 ACT_AHAS N-terminal AC 96.8 0.012 2.6E-07 44.2 8.9 60 118-185 2-63 (72)
103 cd04888 ACT_PheB-BS C-terminal 96.8 0.013 2.8E-07 45.2 9.2 62 327-393 2-65 (76)
104 TIGR00119 acolac_sm acetolacta 96.8 0.0082 1.8E-07 53.8 8.9 66 326-398 2-69 (157)
105 PRK11152 ilvM acetolactate syn 96.8 0.0078 1.7E-07 47.2 7.7 66 326-399 4-71 (76)
106 PRK13562 acetolactate synthase 96.8 0.0069 1.5E-07 48.3 7.3 64 327-393 4-67 (84)
107 cd04879 ACT_3PGDH-like ACT_3PG 96.8 0.0088 1.9E-07 44.8 7.8 44 328-371 2-47 (71)
108 CHL00100 ilvH acetohydroxyacid 96.7 0.007 1.5E-07 55.2 8.3 62 326-393 3-66 (174)
109 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.7 0.011 2.5E-07 45.2 8.4 61 118-185 2-64 (79)
110 TIGR00119 acolac_sm acetolacta 96.7 0.014 3E-07 52.4 9.6 65 117-189 2-68 (157)
111 COG0788 PurU Formyltetrahydrof 96.7 0.0047 1E-07 59.1 6.8 66 115-186 6-73 (287)
112 PRK11895 ilvH acetolactate syn 96.6 0.018 3.9E-07 51.9 9.6 65 117-189 3-69 (161)
113 cd04903 ACT_LSD C-terminal ACT 96.5 0.016 3.4E-07 43.5 8.0 44 328-371 2-47 (71)
114 PRK11895 ilvH acetolactate syn 96.5 0.013 2.7E-07 52.9 8.5 67 326-399 3-71 (161)
115 cd04882 ACT_Bt0572_2 C-termina 96.5 0.012 2.6E-07 43.8 7.2 36 327-362 1-36 (65)
116 PRK11152 ilvM acetolactate syn 96.4 0.023 5E-07 44.6 8.0 63 116-187 3-67 (76)
117 cd04902 ACT_3PGDH-xct C-termin 96.3 0.017 3.7E-07 44.0 7.1 45 328-372 2-48 (73)
118 cd04901 ACT_3PGDH C-terminal A 96.3 0.005 1.1E-07 46.6 4.0 45 328-372 2-46 (69)
119 cd04874 ACT_Af1403 N-terminal 96.3 0.028 6.1E-07 42.3 8.2 46 118-163 2-48 (72)
120 cd04882 ACT_Bt0572_2 C-termina 96.3 0.032 7E-07 41.4 8.2 33 250-282 2-34 (65)
121 cd04879 ACT_3PGDH-like ACT_3PG 96.3 0.013 2.9E-07 43.8 6.0 44 119-162 2-47 (71)
122 cd04905 ACT_CM-PDT C-terminal 96.3 0.049 1.1E-06 42.8 9.5 48 117-164 2-50 (80)
123 cd04876 ACT_RelA-SpoT ACT dom 96.2 0.049 1.1E-06 39.7 8.8 60 119-185 1-61 (71)
124 cd04884 ACT_CBS C-terminal ACT 96.2 0.039 8.4E-07 42.4 8.4 34 119-152 2-35 (72)
125 PRK08577 hypothetical protein; 96.2 0.055 1.2E-06 47.3 10.3 53 112-164 52-106 (136)
126 cd04874 ACT_Af1403 N-terminal 96.1 0.053 1.1E-06 40.7 8.7 35 327-361 2-36 (72)
127 cd04884 ACT_CBS C-terminal ACT 96.1 0.037 8E-07 42.5 7.7 62 328-394 2-66 (72)
128 PRK04435 hypothetical protein; 96.0 0.068 1.5E-06 47.4 10.2 68 111-185 64-133 (147)
129 cd04883 ACT_AcuB C-terminal AC 96.0 0.042 9.1E-07 41.8 7.8 65 326-398 2-68 (72)
130 PRK07431 aspartate kinase; Pro 96.0 3.1 6.7E-05 45.3 25.9 117 25-150 346-474 (587)
131 cd04903 ACT_LSD C-terminal ACT 95.9 0.054 1.2E-06 40.5 8.0 44 30-73 2-47 (71)
132 cd04876 ACT_RelA-SpoT ACT dom 95.9 0.066 1.4E-06 39.0 8.4 61 328-393 1-62 (71)
133 PRK08577 hypothetical protein; 95.9 0.072 1.6E-06 46.5 9.7 78 15-97 42-123 (136)
134 PRK04435 hypothetical protein; 95.8 0.085 1.9E-06 46.8 10.0 75 18-97 60-135 (147)
135 cd04883 ACT_AcuB C-terminal AC 95.7 0.096 2.1E-06 39.8 8.8 47 117-163 2-50 (72)
136 PF13710 ACT_5: ACT domain; PD 95.7 0.05 1.1E-06 41.0 6.9 58 334-398 1-60 (63)
137 cd04901 ACT_3PGDH C-terminal A 95.7 0.013 2.8E-07 44.3 3.6 44 30-73 2-45 (69)
138 cd02116 ACT ACT domains are co 95.6 0.099 2.1E-06 36.0 8.0 35 119-153 1-35 (60)
139 PF13710 ACT_5: ACT domain; PD 95.6 0.049 1.1E-06 41.1 6.6 56 125-188 1-58 (63)
140 cd02116 ACT ACT domains are co 95.6 0.075 1.6E-06 36.6 7.2 35 328-362 1-35 (60)
141 cd04902 ACT_3PGDH-xct C-termin 95.4 0.037 8E-07 42.1 5.3 46 119-164 2-49 (73)
142 PRK07334 threonine dehydratase 95.3 0.12 2.6E-06 53.5 10.5 66 114-186 324-394 (403)
143 cd04880 ACT_AAAH-PDT-like ACT 95.2 0.14 3E-06 39.6 8.2 63 329-393 3-66 (75)
144 PRK11899 prephenate dehydratas 95.2 0.07 1.5E-06 52.5 7.8 54 326-380 195-249 (279)
145 cd04904 ACT_AAAH ACT domain of 95.1 0.12 2.7E-06 40.0 7.6 48 328-376 3-51 (74)
146 PRK07334 threonine dehydratase 95.1 0.37 8E-06 49.9 13.3 66 325-395 326-396 (403)
147 TIGR00656 asp_kin_monofn aspar 94.9 0.88 1.9E-05 47.0 15.4 106 26-146 259-370 (401)
148 cd04931 ACT_PAH ACT domain of 94.8 0.16 3.5E-06 41.2 7.6 51 326-377 15-66 (90)
149 cd04880 ACT_AAAH-PDT-like ACT 94.6 0.33 7.3E-06 37.4 8.9 64 119-186 2-66 (75)
150 cd04898 ACT_ACR-like_4 ACT dom 94.6 0.077 1.7E-06 41.1 5.0 72 119-190 3-76 (77)
151 cd04871 ACT_PSP_2 ACT domains 94.5 0.021 4.6E-07 45.6 1.8 62 118-187 1-72 (84)
152 TIGR00656 asp_kin_monofn aspar 94.4 2.1 4.6E-05 44.2 16.9 100 245-355 258-370 (401)
153 PRK06635 aspartate kinase; Rev 94.3 1.3 2.8E-05 45.7 15.1 109 27-148 262-375 (404)
154 TIGR00719 sda_beta L-serine de 94.1 0.25 5.3E-06 46.5 8.4 58 325-386 148-207 (208)
155 PRK10872 relA (p)ppGpp synthet 94.1 0.29 6.3E-06 54.3 10.1 64 115-185 665-730 (743)
156 PRK06291 aspartate kinase; Pro 94.1 1.8 3.8E-05 45.8 15.6 109 26-149 320-434 (465)
157 PRK08210 aspartate kinase I; R 93.7 2.6 5.6E-05 43.6 16.0 99 26-146 270-372 (403)
158 cd04929 ACT_TPH ACT domain of 93.7 0.38 8.2E-06 37.5 7.4 50 328-378 3-53 (74)
159 cd04931 ACT_PAH ACT domain of 93.3 1.1 2.3E-05 36.4 9.7 69 115-188 13-82 (90)
160 PRK11092 bifunctional (p)ppGpp 93.3 0.47 1E-05 52.6 10.0 64 115-185 625-689 (702)
161 cd04871 ACT_PSP_2 ACT domains 93.3 0.18 3.9E-06 40.3 5.1 61 327-393 1-71 (84)
162 PRK10872 relA (p)ppGpp synthet 93.2 0.43 9.3E-06 53.0 9.5 64 325-393 666-731 (743)
163 COG1707 ACT domain-containing 93.2 0.36 7.7E-06 43.3 7.2 47 118-164 4-52 (218)
164 PRK06635 aspartate kinase; Rev 93.1 1 2.3E-05 46.5 11.8 101 247-356 262-374 (404)
165 cd04885 ACT_ThrD-I Tandem C-te 92.8 0.83 1.8E-05 34.6 7.9 60 119-186 1-61 (68)
166 PRK09034 aspartate kinase; Rev 92.7 2.9 6.2E-05 44.1 14.6 111 26-151 307-423 (454)
167 TIGR00691 spoT_relA (p)ppGpp s 92.6 0.66 1.4E-05 51.4 10.0 64 115-185 609-673 (683)
168 TIGR00719 sda_beta L-serine de 92.6 0.54 1.2E-05 44.2 8.0 53 112-164 144-198 (208)
169 cd04885 ACT_ThrD-I Tandem C-te 92.3 0.82 1.8E-05 34.6 7.4 66 328-398 1-66 (68)
170 PRK11092 bifunctional (p)ppGpp 92.1 0.72 1.6E-05 51.1 9.4 64 325-393 626-690 (702)
171 COG0077 PheA Prephenate dehydr 92.0 0.56 1.2E-05 45.9 7.6 55 325-380 194-249 (279)
172 cd04904 ACT_AAAH ACT domain of 91.9 1.2 2.6E-05 34.5 8.0 47 118-164 2-49 (74)
173 PRK11790 D-3-phosphoglycerate 91.9 0.31 6.8E-06 50.6 6.1 60 325-388 338-397 (409)
174 cd04930 ACT_TH ACT domain of t 91.7 0.7 1.5E-05 39.3 7.0 52 326-378 42-94 (115)
175 PLN02551 aspartokinase 91.7 8.1 0.00017 41.5 16.6 113 25-151 364-482 (521)
176 PRK09436 thrA bifunctional asp 91.6 6.2 0.00014 44.8 16.5 116 25-151 313-434 (819)
177 PF13840 ACT_7: ACT domain ; P 91.5 0.76 1.6E-05 34.7 6.4 46 114-164 4-53 (65)
178 PF13840 ACT_7: ACT domain ; P 91.2 0.79 1.7E-05 34.6 6.1 41 327-372 8-52 (65)
179 PRK06382 threonine dehydratase 91.1 1.3 2.9E-05 45.9 9.7 67 113-186 327-398 (406)
180 TIGR00691 spoT_relA (p)ppGpp s 91.0 1.1 2.4E-05 49.6 9.5 64 325-393 610-674 (683)
181 cd04906 ACT_ThrD-I_1 First of 90.8 2 4.3E-05 34.2 8.4 60 118-186 3-64 (85)
182 PRK08210 aspartate kinase I; R 90.7 9 0.00019 39.6 15.5 97 245-355 269-372 (403)
183 PRK09181 aspartate kinase; Val 90.6 14 0.00031 39.1 17.1 106 26-150 328-438 (475)
184 PRK06545 prephenate dehydrogen 90.3 1 2.2E-05 45.8 8.0 52 113-164 287-338 (359)
185 PRK06349 homoserine dehydrogen 89.9 1.4 3E-05 46.1 8.7 65 325-393 348-412 (426)
186 cd04929 ACT_TPH ACT domain of 89.9 1.3 2.8E-05 34.5 6.4 46 119-164 3-49 (74)
187 PRK06291 aspartate kinase; Pro 89.5 17 0.00036 38.5 16.5 103 245-358 319-434 (465)
188 PRK10622 pheA bifunctional cho 89.0 1.5 3.3E-05 45.1 8.0 55 325-380 297-352 (386)
189 COG0440 IlvH Acetolactate synt 88.7 18 0.00039 32.6 13.6 112 27-151 4-121 (163)
190 PRK11899 prephenate dehydratas 88.6 2.9 6.3E-05 41.2 9.3 52 116-169 194-246 (279)
191 COG1707 ACT domain-containing 88.5 1.5 3.3E-05 39.3 6.5 40 29-68 4-45 (218)
192 COG0317 SpoT Guanosine polypho 88.4 2.5 5.5E-05 46.5 9.6 66 113-185 624-690 (701)
193 PRK09034 aspartate kinase; Rev 88.4 15 0.00033 38.7 15.2 107 246-360 307-423 (454)
194 COG0440 IlvH Acetolactate synt 88.3 1.5 3.3E-05 39.3 6.5 68 116-190 4-72 (163)
195 PRK11790 D-3-phosphoglycerate 88.1 0.91 2E-05 47.2 5.8 50 115-164 337-386 (409)
196 KOG2663 Acetolactate synthase, 88.1 1.2 2.7E-05 42.5 6.0 37 115-151 76-112 (309)
197 PLN02551 aspartokinase 87.5 23 0.00049 38.1 16.0 133 245-397 364-509 (521)
198 cd04906 ACT_ThrD-I_1 First of 87.2 5.1 0.00011 31.8 8.4 67 327-399 3-70 (85)
199 KOG2663 Acetolactate synthase, 87.0 1.2 2.6E-05 42.6 5.3 62 249-317 79-142 (309)
200 PRK13581 D-3-phosphoglycerate 86.7 1.7 3.6E-05 46.7 7.0 61 325-389 452-514 (526)
201 TIGR01127 ilvA_1Cterm threonin 86.6 4.9 0.00011 41.2 10.2 66 114-186 303-373 (380)
202 TIGR01127 ilvA_1Cterm threonin 86.6 3.7 7.9E-05 42.1 9.2 33 248-280 306-338 (380)
203 PRK09084 aspartate kinase III; 86.5 10 0.00022 39.9 12.6 104 25-142 304-413 (448)
204 PRK08818 prephenate dehydrogen 86.5 2.2 4.9E-05 43.7 7.5 49 115-164 294-343 (370)
205 PRK08198 threonine dehydratase 86.5 5.2 0.00011 41.3 10.4 38 113-150 324-361 (404)
206 COG0077 PheA Prephenate dehydr 86.4 3.7 7.9E-05 40.3 8.5 54 115-170 193-247 (279)
207 PRK06382 threonine dehydratase 86.2 11 0.00023 39.2 12.5 68 324-396 329-401 (406)
208 COG0317 SpoT Guanosine polypho 86.0 6.8 0.00015 43.3 11.1 86 6-97 603-692 (701)
209 TIGR01327 PGDH D-3-phosphoglyc 85.6 1.5 3.3E-05 47.0 6.1 61 325-389 451-513 (525)
210 COG0527 LysC Aspartokinases [A 85.6 35 0.00076 36.0 15.9 108 25-148 305-418 (447)
211 PRK09436 thrA bifunctional asp 85.3 28 0.00062 39.6 16.2 102 245-357 313-431 (819)
212 cd04930 ACT_TH ACT domain of t 85.1 3.3 7.1E-05 35.2 6.6 49 116-164 41-90 (115)
213 cd04932 ACT_AKiii-LysC-EC_1 AC 85.0 7.1 0.00015 30.3 8.0 61 327-393 3-67 (75)
214 PRK06545 prephenate dehydrogen 84.7 2.6 5.6E-05 42.9 6.9 48 325-372 290-337 (359)
215 TIGR00657 asp_kinases aspartat 84.6 24 0.00053 36.9 14.4 108 26-148 301-413 (441)
216 PF05088 Bac_GDH: Bacterial NA 84.3 1.1E+02 0.0024 37.3 33.3 159 233-393 327-563 (1528)
217 PRK06349 homoserine dehydrogen 84.1 5.1 0.00011 41.8 9.0 52 113-164 345-396 (426)
218 PRK08818 prephenate dehydrogen 84.0 2.2 4.8E-05 43.7 6.0 47 325-372 295-342 (370)
219 PRK12483 threonine dehydratase 83.8 47 0.001 35.7 16.2 144 245-402 343-511 (521)
220 cd04935 ACT_AKiii-DAPDC_1 ACT 83.2 6.6 0.00014 30.4 7.2 56 333-393 12-67 (75)
221 PRK08961 bifunctional aspartat 83.2 36 0.00077 39.0 15.9 104 25-144 320-429 (861)
222 TIGR00657 asp_kinases aspartat 83.0 26 0.00057 36.6 13.8 102 245-357 300-413 (441)
223 PRK13581 D-3-phosphoglycerate 82.3 3.4 7.4E-05 44.4 7.0 51 113-163 449-501 (526)
224 PRK09181 aspartate kinase; Val 81.8 15 0.00033 38.9 11.5 130 246-396 328-465 (475)
225 cd04922 ACT_AKi-HSDH-ThrA_2 AC 81.6 16 0.00036 26.5 8.7 34 118-151 3-39 (66)
226 PLN02317 arogenate dehydratase 81.4 5.8 0.00013 40.8 7.8 52 326-378 284-350 (382)
227 COG0527 LysC Aspartokinases [A 81.4 40 0.00086 35.6 14.2 117 245-372 305-429 (447)
228 PRK10622 pheA bifunctional cho 80.7 7.9 0.00017 40.0 8.7 50 115-164 296-346 (386)
229 cd04919 ACT_AK-Hom3_2 ACT doma 80.7 14 0.0003 27.1 8.0 34 327-360 3-39 (66)
230 cd04919 ACT_AK-Hom3_2 ACT doma 80.6 19 0.00042 26.3 8.8 34 118-151 3-39 (66)
231 PRK08198 threonine dehydratase 80.1 13 0.00028 38.4 10.2 66 26-97 326-396 (404)
232 cd04922 ACT_AKi-HSDH-ThrA_2 AC 79.7 16 0.00035 26.6 8.1 34 327-360 3-39 (66)
233 cd04937 ACT_AKi-DapG-BS_2 ACT 79.4 19 0.00041 26.6 8.3 28 118-145 3-33 (64)
234 COG2150 Predicted regulator of 78.6 3.6 7.9E-05 36.8 4.6 36 26-61 94-129 (167)
235 TIGR01327 PGDH D-3-phosphoglyc 78.2 4.4 9.6E-05 43.5 6.2 51 114-164 449-501 (525)
236 cd04913 ACT_AKii-LysC-BS-like_ 76.6 16 0.00034 27.1 7.3 28 123-150 9-36 (75)
237 cd04891 ACT_AK-LysC-DapG-like_ 76.4 11 0.00024 26.5 6.2 28 123-150 8-35 (61)
238 cd04937 ACT_AKi-DapG-BS_2 ACT 76.0 20 0.00043 26.5 7.6 28 327-354 3-33 (64)
239 PRK11898 prephenate dehydratas 76.0 9.1 0.0002 37.7 7.2 66 326-393 197-264 (283)
240 cd04890 ACT_AK-like_1 ACT doma 75.2 22 0.00047 25.8 7.5 51 333-391 11-61 (62)
241 PRK08526 threonine dehydratase 74.7 57 0.0012 33.8 13.1 66 114-186 324-394 (403)
242 COG2061 ACT-domain-containing 74.0 25 0.00054 31.3 8.5 73 248-356 6-79 (170)
243 cd04913 ACT_AKii-LysC-BS-like_ 73.7 21 0.00046 26.3 7.4 27 332-358 9-35 (75)
244 PRK14630 hypothetical protein; 73.5 27 0.00059 30.8 8.9 92 256-350 6-97 (143)
245 COG2150 Predicted regulator of 73.3 6.6 0.00014 35.2 4.8 36 115-150 92-129 (167)
246 PRK09466 metL bifunctional asp 73.2 57 0.0012 37.1 13.5 105 25-147 315-425 (810)
247 COG4492 PheB ACT domain-contai 73.1 18 0.00038 31.5 7.2 50 24-73 69-119 (150)
248 PRK09084 aspartate kinase III; 72.9 35 0.00076 35.9 11.1 99 245-351 304-413 (448)
249 PRK12483 threonine dehydratase 72.5 1.4E+02 0.0031 32.1 16.4 115 25-146 343-471 (521)
250 cd04916 ACT_AKiii-YclM-BS_2 AC 72.5 27 0.00058 25.4 7.5 34 327-360 3-39 (66)
251 cd04891 ACT_AK-LysC-DapG-like_ 71.7 26 0.00056 24.5 7.2 41 332-372 8-49 (61)
252 PLN02550 threonine dehydratase 71.7 1.5E+02 0.0032 32.5 15.6 141 247-402 417-581 (591)
253 COG3283 TyrR Transcriptional r 71.4 11 0.00023 38.6 6.3 72 327-406 2-75 (511)
254 PRK08961 bifunctional aspartat 71.0 84 0.0018 36.0 14.4 102 245-353 320-429 (861)
255 cd04868 ACT_AK-like ACT domain 70.8 8.6 0.00019 26.8 4.3 32 327-358 2-36 (60)
256 PRK14636 hypothetical protein; 70.2 36 0.00078 31.1 9.1 93 257-350 4-98 (176)
257 cd04932 ACT_AKiii-LysC-EC_1 AC 69.7 43 0.00093 25.9 8.3 31 28-58 2-35 (75)
258 cd04912 ACT_AKiii-LysC-EC-like 69.5 33 0.00072 26.2 7.7 62 29-96 3-67 (75)
259 COG3978 Acetolactate synthase 69.1 34 0.00074 27.0 7.3 66 116-190 3-70 (86)
260 PRK14646 hypothetical protein; 68.8 58 0.0013 29.1 10.0 92 259-352 8-102 (155)
261 cd04924 ACT_AK-Arch_2 ACT doma 68.6 42 0.0009 24.2 8.8 34 118-151 3-39 (66)
262 cd04912 ACT_AKiii-LysC-EC-like 67.9 35 0.00077 26.1 7.5 57 254-316 11-67 (75)
263 PRK11898 prephenate dehydratas 67.6 27 0.00058 34.5 8.3 49 116-164 196-246 (283)
264 TIGR01270 Trp_5_monoox tryptop 67.6 14 0.0003 38.9 6.5 52 326-378 32-85 (464)
265 COG4492 PheB ACT domain-contai 67.4 22 0.00049 30.8 6.6 53 112-164 68-121 (150)
266 PRK10820 DNA-binding transcrip 67.3 18 0.00039 38.9 7.6 36 327-362 2-37 (520)
267 PRK14634 hypothetical protein; 67.1 60 0.0013 29.0 9.8 92 258-350 7-100 (155)
268 TIGR01268 Phe4hydrox_tetr phen 66.2 20 0.00043 37.5 7.3 52 326-378 17-69 (436)
269 cd04933 ACT_AK1-AT_1 ACT domai 64.9 29 0.00063 27.2 6.5 57 333-393 12-70 (78)
270 cd04916 ACT_AKiii-YclM-BS_2 AC 64.9 50 0.0011 23.8 8.7 34 118-151 3-39 (66)
271 PRK08841 aspartate kinase; Val 64.7 78 0.0017 32.7 11.5 94 26-148 257-350 (392)
272 cd04924 ACT_AK-Arch_2 ACT doma 64.5 51 0.0011 23.8 8.2 44 327-372 3-49 (66)
273 cd04868 ACT_AK-like ACT domain 64.1 14 0.0003 25.7 4.3 33 118-150 2-37 (60)
274 PRK09224 threonine dehydratase 64.0 2.1E+02 0.0045 30.6 16.8 142 245-399 326-491 (504)
275 PRK08526 threonine dehydratase 63.9 1.2E+02 0.0025 31.5 12.6 71 324-399 325-400 (403)
276 PRK14645 hypothetical protein; 63.8 71 0.0015 28.5 9.5 92 258-350 9-102 (154)
277 cd04918 ACT_AK1-AT_2 ACT domai 63.4 58 0.0013 24.0 8.2 35 327-361 3-39 (65)
278 PLN02550 threonine dehydratase 63.3 2.3E+02 0.0051 31.0 16.0 115 26-148 416-543 (591)
279 cd04918 ACT_AK1-AT_2 ACT domai 62.7 60 0.0013 24.0 8.4 34 118-151 3-38 (65)
280 COG3978 Acetolactate synthase 62.6 63 0.0014 25.6 7.6 47 27-73 3-51 (86)
281 PRK09224 threonine dehydratase 62.1 1.4E+02 0.003 32.0 13.1 117 26-150 327-456 (504)
282 cd04935 ACT_AKiii-DAPDC_1 ACT 62.0 54 0.0012 25.3 7.5 56 124-186 12-67 (75)
283 cd04923 ACT_AK-LysC-DapG-like_ 61.9 49 0.0011 23.5 7.0 31 327-357 2-35 (63)
284 PLN02317 arogenate dehydratase 61.1 47 0.001 34.2 8.9 37 116-152 283-319 (382)
285 PTZ00324 glutamate dehydrogena 58.2 87 0.0019 36.3 11.1 69 11-79 213-286 (1002)
286 cd04892 ACT_AK-like_2 ACT doma 57.8 63 0.0014 22.7 8.4 32 118-149 2-36 (65)
287 cd04920 ACT_AKiii-DAPDC_2 ACT 57.8 61 0.0013 23.8 6.9 56 327-395 2-61 (63)
288 cd04934 ACT_AK-Hom3_1 CT domai 57.8 59 0.0013 24.9 7.0 54 333-393 12-65 (73)
289 cd04915 ACT_AK-Ectoine_2 ACT d 57.6 47 0.001 24.8 6.3 32 327-358 4-37 (66)
290 cd04892 ACT_AK-like_2 ACT doma 56.8 22 0.00047 25.2 4.3 32 327-358 2-36 (65)
291 PF05088 Bac_GDH: Bacterial NA 56.3 4.7E+02 0.01 32.2 22.1 180 12-192 326-569 (1528)
292 TIGR01270 Trp_5_monoox tryptop 55.5 35 0.00075 36.0 6.9 52 113-164 28-81 (464)
293 TIGR01268 Phe4hydrox_tetr phen 55.4 72 0.0016 33.4 9.2 49 116-164 16-65 (436)
294 TIGR02079 THD1 threonine dehyd 53.8 2.6E+02 0.0056 29.0 13.2 66 114-186 323-390 (409)
295 cd04921 ACT_AKi-HSDH-ThrA-like 53.7 82 0.0018 23.9 7.4 34 327-360 3-39 (80)
296 PRK14647 hypothetical protein; 53.4 1.4E+02 0.0031 26.7 9.8 88 260-350 10-99 (159)
297 PRK10820 DNA-binding transcrip 53.4 35 0.00077 36.6 6.9 35 118-152 2-36 (520)
298 PRK14637 hypothetical protein; 53.3 1.6E+02 0.0036 26.1 10.4 91 256-350 6-98 (151)
299 PRK05925 aspartate kinase; Pro 53.0 1.7E+02 0.0037 30.7 11.7 103 26-146 299-404 (440)
300 PRK14634 hypothetical protein; 51.9 1.2E+02 0.0026 27.1 8.9 83 338-422 9-96 (155)
301 PRK00092 ribosome maturation p 51.6 1.5E+02 0.0033 26.2 9.7 88 260-350 9-98 (154)
302 cd04920 ACT_AKiii-DAPDC_2 ACT 51.3 96 0.0021 22.8 7.4 27 118-144 2-31 (63)
303 cd04890 ACT_AK-like_1 ACT doma 50.3 93 0.002 22.3 7.3 37 124-164 11-47 (62)
304 PRK08639 threonine dehydratase 50.2 1E+02 0.0022 32.1 9.5 69 113-186 333-401 (420)
305 PRK14639 hypothetical protein; 49.3 1.7E+02 0.0037 25.6 9.3 86 265-353 4-91 (140)
306 PRK14640 hypothetical protein; 49.0 1.9E+02 0.0042 25.6 10.1 90 260-352 8-99 (152)
307 cd04923 ACT_AK-LysC-DapG-like_ 48.0 96 0.0021 21.9 7.7 31 118-148 2-35 (63)
308 PRK00907 hypothetical protein; 47.9 68 0.0015 26.1 6.1 65 27-97 17-85 (92)
309 cd04936 ACT_AKii-LysC-BS-like_ 46.9 1E+02 0.0022 21.8 7.6 31 327-357 2-35 (63)
310 cd04917 ACT_AKiii-LysC-EC_2 AC 46.0 1.1E+02 0.0024 22.2 6.8 55 327-394 3-61 (64)
311 TIGR02079 THD1 threonine dehyd 46.0 3.6E+02 0.0077 28.0 12.8 72 324-399 324-396 (409)
312 cd04914 ACT_AKi-DapG-BS_1 ACT 45.6 35 0.00076 25.6 3.9 30 118-147 3-33 (67)
313 cd04921 ACT_AKi-HSDH-ThrA-like 45.5 1.3E+02 0.0028 22.7 8.7 34 118-151 3-39 (80)
314 PRK14646 hypothetical protein; 45.5 1.9E+02 0.0042 25.7 9.3 83 338-422 9-96 (155)
315 cd04934 ACT_AK-Hom3_1 CT domai 45.4 1.1E+02 0.0025 23.3 6.9 54 124-186 12-65 (73)
316 COG3603 Uncharacterized conser 45.0 42 0.00092 28.6 4.5 52 334-398 75-126 (128)
317 PF04083 Abhydro_lipase: Parti 44.3 59 0.0013 24.4 4.9 33 45-77 2-34 (63)
318 PRK14633 hypothetical protein; 44.1 2.3E+02 0.005 25.1 9.6 88 260-351 6-95 (150)
319 cd04936 ACT_AKii-LysC-BS-like_ 43.3 1.2E+02 0.0025 21.4 8.1 30 119-148 3-35 (63)
320 COG0779 Uncharacterized protei 42.9 2.3E+02 0.005 25.3 9.2 76 258-337 8-88 (153)
321 PRK08639 threonine dehydratase 41.7 1.6E+02 0.0034 30.7 9.3 67 25-97 334-402 (420)
322 cd04915 ACT_AK-Ectoine_2 ACT d 41.7 1.4E+02 0.0031 22.1 8.9 34 117-150 3-38 (66)
323 PRK09466 metL bifunctional asp 40.1 6.2E+02 0.013 28.9 16.1 101 245-356 315-425 (810)
324 PRK14630 hypothetical protein; 39.8 2.6E+02 0.0056 24.6 9.0 42 36-78 6-48 (143)
325 cd04933 ACT_AK1-AT_1 ACT domai 39.7 31 0.00067 27.1 2.8 26 123-148 11-36 (78)
326 PRK05974 phosphoribosylformylg 38.2 1.4E+02 0.0031 23.3 6.5 59 327-392 2-66 (80)
327 PF02576 DUF150: Uncharacteris 37.6 1.6E+02 0.0036 25.5 7.5 72 265-339 3-76 (141)
328 PRK02047 hypothetical protein; 36.5 1.7E+02 0.0038 23.5 6.9 66 26-97 15-84 (91)
329 PRK14632 hypothetical protein; 36.2 3.1E+02 0.0068 24.9 9.3 87 260-350 10-98 (172)
330 cd04914 ACT_AKi-DapG-BS_1 ACT 36.1 43 0.00094 25.1 3.1 41 328-372 4-45 (67)
331 TIGR01124 ilvA_2Cterm threonin 36.0 5E+02 0.011 27.8 12.2 71 325-401 325-395 (499)
332 PRK00907 hypothetical protein; 35.4 1.8E+02 0.004 23.6 6.8 63 116-185 17-83 (92)
333 PRK14636 hypothetical protein; 34.9 3.6E+02 0.0077 24.6 9.8 80 338-419 7-91 (176)
334 PF01709 Transcrip_reg: Transc 34.6 2.7E+02 0.0057 26.7 9.0 102 26-150 91-196 (234)
335 PRK14631 hypothetical protein; 34.4 3.6E+02 0.0077 24.6 9.3 83 339-423 11-114 (174)
336 TIGR01124 ilvA_2Cterm threonin 34.1 6.1E+02 0.013 27.1 12.8 63 115-186 324-387 (499)
337 PRK14638 hypothetical protein; 33.3 3.4E+02 0.0075 24.0 10.2 88 260-350 10-100 (150)
338 cd07247 SgaA_N_like N-terminal 31.6 1.7E+02 0.0036 23.3 6.3 51 25-81 60-110 (114)
339 COG3603 Uncharacterized conser 29.8 2.6E+02 0.0056 24.0 6.9 37 112-148 59-98 (128)
340 PRK00341 hypothetical protein; 28.4 2.6E+02 0.0057 22.5 6.6 63 28-97 18-84 (91)
341 PRK06423 phosphoribosylformylg 28.0 2.7E+02 0.0058 21.3 6.4 48 333-392 8-60 (73)
342 PRK00103 rRNA large subunit me 27.9 47 0.001 29.7 2.4 56 370-425 71-131 (157)
343 PRK14638 hypothetical protein; 27.6 3.8E+02 0.0082 23.7 8.1 79 341-422 13-96 (150)
344 PRK14640 hypothetical protein; 27.1 4.4E+02 0.0096 23.3 8.9 79 339-421 9-92 (152)
345 cd07261 Glo_EDI_BRP_like_11 Th 27.1 1.3E+02 0.0029 23.9 5.0 52 26-81 59-110 (114)
346 PRK14645 hypothetical protein; 26.9 4.5E+02 0.0099 23.4 9.2 84 338-423 11-99 (154)
347 cd04917 ACT_AKiii-LysC-EC_2 AC 26.0 2.6E+02 0.0056 20.2 7.9 26 118-143 3-31 (64)
348 PF04083 Abhydro_lipase: Parti 25.7 2E+02 0.0044 21.5 5.2 33 265-297 2-34 (63)
349 cd07247 SgaA_N_like N-terminal 25.0 2E+02 0.0044 22.8 5.7 48 326-379 63-110 (114)
350 PRK14639 hypothetical protein; 24.3 4.8E+02 0.01 22.8 8.5 74 342-419 3-81 (140)
351 COG3283 TyrR Transcriptional r 24.3 1.7E+02 0.0037 30.2 5.7 34 118-151 2-35 (511)
352 PRK00092 ribosome maturation p 23.4 5.2E+02 0.011 22.8 9.7 90 39-141 8-98 (154)
353 COG1576 Uncharacterized conser 22.9 49 0.0011 29.6 1.5 57 369-425 69-130 (155)
354 PRK14631 hypothetical protein; 22.1 6E+02 0.013 23.1 11.3 90 260-351 10-118 (174)
355 PRK14644 hypothetical protein; 21.9 5.3E+02 0.012 22.4 8.6 64 266-336 6-74 (136)
356 cd07253 Glo_EDI_BRP_like_2 Thi 21.1 1.8E+02 0.004 23.1 4.7 50 327-379 70-120 (125)
357 cd07245 Glo_EDI_BRP_like_9 Thi 20.9 1.6E+02 0.0036 22.7 4.3 48 27-81 65-112 (114)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3.9e-28 Score=269.36 Aligned_cols=163 Identities=21% Similarity=0.371 Sum_probs=147.6
Q ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeEEEEEEEEccCCCCCCcHHHHHHH
Q 013722 232 NSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVT-GRMEAYQEYYIKHVDGFPISSEAERQRV 310 (437)
Q Consensus 232 ~~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t-~~g~ald~F~V~~~~g~~~~~~~~~~~l 310 (437)
..+|.|.+++.++.++++|+|+++||||||++++++|..+|+||.+|+|.| .+|+++|+|+|++++|.++. ++++++|
T Consensus 662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~l 740 (854)
T PRK01759 662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQL 740 (854)
T ss_pred CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence 357888999999999999999999999999999999999999999999999 57899999999999999885 5688899
Q ss_pred HHHHHHHHhh--------cc---------C-----------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC
Q 013722 311 MACLEAAIER--------RA---------S-----------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG 362 (437)
Q Consensus 311 ~~~L~~~l~~--------~~---------~-----------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g 362 (437)
++.|.++|.. +. | ..|+|+|.|.|||||||+|+++|.++|++|++|||+|+|
T Consensus 741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g 820 (854)
T PRK01759 741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG 820 (854)
T ss_pred HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence 9999998731 00 1 148999999999999999999999999999999999999
Q ss_pred CeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013722 363 RKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTI 395 (437)
Q Consensus 363 ~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~ 395 (437)
+||+|+|||+|.+|+|++++++++|+++|.+++
T Consensus 821 erv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 821 EKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred ceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 999999999999999998766699999998854
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=5.3e-28 Score=269.19 Aligned_cols=163 Identities=23% Similarity=0.387 Sum_probs=148.7
Q ss_pred CCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHHH
Q 013722 233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRVM 311 (437)
Q Consensus 233 ~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l~ 311 (437)
.+|.|.+++.++.++++|+|+++||||||++++++|+.+|+||.+|+|+|+ +|+++|+|+|++++|.++. ++++++|+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~ 765 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR 765 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence 578899999999999999999999999999999999999999999999997 5799999999999999884 56889999
Q ss_pred HHHHHHHhhc---------cC--------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC
Q 013722 312 ACLEAAIERR---------AS--------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG 362 (437)
Q Consensus 312 ~~L~~~l~~~---------~~--------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g 362 (437)
+.|+++|..+ .| ..|+|||.|.|||||||+|+++|.++|++|++|||+|+|
T Consensus 766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g 845 (884)
T PRK05007 766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG 845 (884)
T ss_pred HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence 9999988321 11 148999999999999999999999999999999999999
Q ss_pred CeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013722 363 RKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTIL 396 (437)
Q Consensus 363 ~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~ 396 (437)
++|+|+|||++.+|.|++++.+++|+++|.+++-
T Consensus 846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 846 ERVEDLFILATADRRALNEELQQELRQRLTEALN 879 (884)
T ss_pred ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998788999999998663
No 3
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.9e-27 Score=249.79 Aligned_cols=166 Identities=27% Similarity=0.414 Sum_probs=150.2
Q ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHH
Q 013722 232 NSRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRV 310 (437)
Q Consensus 232 ~~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l 310 (437)
..+|.|.+...+..+.++|+||+||+|.||+.+|.++...|+||++|+|+|+ +||++|+|+|++++|.++. +++...+
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~ 747 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL 747 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence 5679999999999999999999999999999999999999999999999996 7999999999999999988 5688888
Q ss_pred HHHHHHHHhh---------ccC--------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec
Q 013722 311 MACLEAAIER---------RAS--------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM 361 (437)
Q Consensus 311 ~~~L~~~l~~---------~~~--------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~ 361 (437)
+..|.+++.. +.+ +.|+|||++.||||||+.|+++|.+++++|++|||+|+
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~ 827 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence 8888888731 111 14899999999999999999999999999999999999
Q ss_pred CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722 362 GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV 398 (437)
Q Consensus 362 g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~ 398 (437)
|++|+|+|||++..|.+++++.++.+.+.|.++++..
T Consensus 828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~~ 864 (867)
T COG2844 828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPN 864 (867)
T ss_pred cccceeEEEEeccccccCCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999888888999888866644
No 4
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.5e-26 Score=254.98 Aligned_cols=176 Identities=24% Similarity=0.325 Sum_probs=151.3
Q ss_pred ccCCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHH
Q 013722 11 RMNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISY 89 (437)
Q Consensus 11 ~~~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~ 89 (437)
...+|.|.+++..+.++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++++|.++. +..++.
T Consensus 661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~ 739 (854)
T PRK01759 661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQ 739 (854)
T ss_pred cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence 3457899999999999999999999999999999999999999999999987 89999999999999999885 456666
Q ss_pred HHHHHhhccCc----cc-------------CcceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec
Q 013722 90 IKTTVETNASF----LN-------------SMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH 152 (437)
Q Consensus 90 l~~~L~~~~~~----~~-------------~~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~ 152 (437)
|+++|...... .. ++...++++.+..+|+|+|.+.||||||++|+++|.++|++|++|+|+|.
T Consensus 740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~ 819 (854)
T PRK01759 740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI 819 (854)
T ss_pred HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc
Confidence 66666554321 00 11123456778899999999999999999999999999999999999999
Q ss_pred CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722 153 NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR 189 (437)
Q Consensus 153 ~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~ 189 (437)
|+++.|+|||++ ..|.++.++++ +.|+++|.++|.
T Consensus 820 gerv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l~ 854 (854)
T PRK01759 820 GEKAEDFFILTN-QQGQALDEEER-KALKSRLLSNLS 854 (854)
T ss_pred CceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhC
Confidence 999999999999 48999976666 999999998763
No 5
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=6.9e-26 Score=252.29 Aligned_cols=175 Identities=23% Similarity=0.300 Sum_probs=150.2
Q ss_pred CCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHHH
Q 013722 13 NPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYIK 91 (437)
Q Consensus 13 ~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~ 91 (437)
.+|.|.+++..+.++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|++.+|.+++ +..++.|+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~ 765 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR 765 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence 57899999999999999999999999999999999999999999999987 56799999999999999875 34555566
Q ss_pred HHHhhccC----cc---c-----------CcceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC
Q 013722 92 TTVETNAS----FL---N-----------SMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN 153 (437)
Q Consensus 92 ~~L~~~~~----~~---~-----------~~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~ 153 (437)
+.|..... .. . ++...++++.+..+|+|+|.+.||||||++|+++|.++|++|++|+|+|.|
T Consensus 766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g 845 (884)
T PRK05007 766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG 845 (884)
T ss_pred HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence 55554321 10 0 111234567888999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722 154 ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT 190 (437)
Q Consensus 154 ~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g 190 (437)
+++.|+|||++ ..|.+++ +++.+.|+++|.++|..
T Consensus 846 era~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 846 ERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred ceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 99999999999 5889885 78889999999999865
No 6
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=1.3e-25 Score=250.11 Aligned_cols=168 Identities=26% Similarity=0.433 Sum_probs=147.0
Q ss_pred CCcEEEEEecCC---CCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCC-cHHHH
Q 013722 233 SRPHVTILDCSD---RDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPIS-SEAER 307 (437)
Q Consensus 233 ~~p~V~v~~~~~---~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~-~~~~~ 307 (437)
..|.|.+.+.++ .++++|+||++||||||+++|++|+.+|+||++|+|+|+ +|+++|+|+|++++|.++. ++.++
T Consensus 687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~ 766 (895)
T PRK00275 687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI 766 (895)
T ss_pred CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence 457777877665 699999999999999999999999999999999999886 6899999999999999854 45788
Q ss_pred HHHHHHHHHHHhh----------ccC--------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEE
Q 013722 308 QRVMACLEAAIER----------RAS--------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAE 357 (437)
Q Consensus 308 ~~l~~~L~~~l~~----------~~~--------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~ 357 (437)
++|++.|.++|.. +.+ ..|+|+|.+.|||||||+|+.+|.++|+||++|+
T Consensus 767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak 846 (895)
T PRK00275 767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK 846 (895)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence 9999999988731 110 1489999999999999999999999999999999
Q ss_pred eeecCCeEEEEEEEEcCCCCCCCh-HHHHHHHHHHhhccccccc
Q 013722 358 ISTMGRKVKDTFFVTDASGNPVDP-KIVDSIQHQIGRTILQVKG 400 (437)
Q Consensus 358 I~T~g~~a~D~F~v~d~~g~~l~~-~~~~~l~~~L~~~~~~~~~ 400 (437)
|.|.|++|+|+|||+|.+|.|+++ +.+++|+++|.+++.+..+
T Consensus 847 I~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~ 890 (895)
T PRK00275 847 IATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNE 890 (895)
T ss_pred EEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999975 6778999999997755443
No 7
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=7e-25 Score=244.31 Aligned_cols=180 Identities=22% Similarity=0.384 Sum_probs=151.3
Q ss_pred cCCCEEEEeeCCC---CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCC-cHHH
Q 013722 12 MNPPRVVIDNDVC---EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIG-DQAT 86 (437)
Q Consensus 12 ~~~~~V~v~~~~~---~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~-~~~~ 86 (437)
...|.|.+++... .+.++|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|++++|.++. ++.+
T Consensus 686 ~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r 765 (895)
T PRK00275 686 DGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPAR 765 (895)
T ss_pred CCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHH
Confidence 3467888887765 58999999999999999999999999999999999975 78999999999999999854 3456
Q ss_pred HHHHHHHHhhccC----cc----c-----------CcceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEE
Q 013722 87 ISYIKTTVETNAS----FL----N-----------SMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSA 147 (437)
Q Consensus 87 ~~~l~~~L~~~~~----~~----~-----------~~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A 147 (437)
++.|+++|...+. .+ . ++...++++.+.++|+|+|.+.||||||++|+++|+.+|+||++|
T Consensus 766 ~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~A 845 (895)
T PRK00275 766 IEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNA 845 (895)
T ss_pred HHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEe
Confidence 6667666655421 10 0 011124457778899999999999999999999999999999999
Q ss_pred EEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhccCC
Q 013722 148 EIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNG 192 (437)
Q Consensus 148 ~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g~~ 192 (437)
+|+|.|+++.|+|+|+++ .|.++.+++++++|+++|.++|.+..
T Consensus 846 kI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~L~~~L~~~~ 889 (895)
T PRK00275 846 KIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDAICEQLDARN 889 (895)
T ss_pred EEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 999999999999999994 88998888899999999999997653
No 8
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=4.8e-25 Score=244.25 Aligned_cols=162 Identities=22% Similarity=0.355 Sum_probs=141.4
Q ss_pred CCcEEEEEe-cCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHH
Q 013722 233 SRPHVTILD-CSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRV 310 (437)
Q Consensus 233 ~~p~V~v~~-~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l 310 (437)
..|.|.+.. .++.++++|+|+++||||||+++|++|+.+|+||++|+|+|+ +|+++|+|+|.+++|.. ...++++
T Consensus 675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~~~~~i 751 (869)
T PRK04374 675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DGDPQRL 751 (869)
T ss_pred CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hHHHHHH
Confidence 356676655 778899999999999999999999999999999999999995 79999999999999875 2457778
Q ss_pred HHHHHHHHhh----------ccC--------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee
Q 013722 311 MACLEAAIER----------RAS--------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEIST 360 (437)
Q Consensus 311 ~~~L~~~l~~----------~~~--------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T 360 (437)
++.|+++|.. +.+ ..|+|+|.|.|||||||+|+.+|.++|+||++|||+|
T Consensus 752 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T 831 (869)
T PRK04374 752 AAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIAT 831 (869)
T ss_pred HHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEe
Confidence 8888887731 111 1389999999999999999999999999999999999
Q ss_pred cCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccc
Q 013722 361 MGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQ 397 (437)
Q Consensus 361 ~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~ 397 (437)
.|++|+|+|||+|.+|.+++++++++|+++|.+++-+
T Consensus 832 ~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~~ 868 (869)
T PRK04374 832 FGERAEDQFQITDEHDRPLSESARQALRDALCACLDP 868 (869)
T ss_pred cCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhcc
Confidence 9999999999999999998776669999999987643
No 9
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.93 E-value=1.2e-24 Score=242.70 Aligned_cols=163 Identities=26% Similarity=0.335 Sum_probs=148.0
Q ss_pred CCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHHH
Q 013722 233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRVM 311 (437)
Q Consensus 233 ~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l~ 311 (437)
..|.|.+.+....++++|+|+++||||||++++++|+.+|+||++|+|+|+ +|+++|+|+|++++|.++.++.++++|+
T Consensus 654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence 468888888777999999999999999999999999999999999999965 7899999999999999888777899999
Q ss_pred HHHHHHHhh-----------c-cC--------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEee
Q 013722 312 ACLEAAIER-----------R-AS--------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEIS 359 (437)
Q Consensus 312 ~~L~~~l~~-----------~-~~--------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~ 359 (437)
+.|.++|.. + .+ ..|+|+|.+.|||||||+|+++|.++|++|++|+|+
T Consensus 734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~ 813 (850)
T TIGR01693 734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT 813 (850)
T ss_pred HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence 999888731 1 11 148999999999999999999999999999999999
Q ss_pred ecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013722 360 TMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTI 395 (437)
Q Consensus 360 T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~ 395 (437)
|.|++++|+|||++..|.|+++++++.|+++|.+++
T Consensus 814 t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 814 TFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred ecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998888899999998865
No 10
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.92 E-value=9.3e-24 Score=235.64 Aligned_cols=175 Identities=23% Similarity=0.309 Sum_probs=149.4
Q ss_pred cCCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE-EeCCEEEEEEEEEeCCCCCCCcHHHHHHH
Q 013722 12 MNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYIS-SDGGYLMDVFYVTDINGQKIGDQATISYI 90 (437)
Q Consensus 12 ~~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~-t~~g~~~d~F~V~~~~g~~~~~~~~~~~l 90 (437)
...|.|.+++....+.++|+|+++||||||++|+++|+.+|+||++|+|+ |.+|+++|+|+|++.+|.++.++..++.|
T Consensus 653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i 732 (850)
T TIGR01693 653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQEL 732 (850)
T ss_pred CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHH
Confidence 44789999987778999999999999999999999999999999999998 68999999999999999988776666666
Q ss_pred HHHHhhccC----cc-----c------------CcceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEE
Q 013722 91 KTTVETNAS----FL-----N------------SMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEI 149 (437)
Q Consensus 91 ~~~L~~~~~----~~-----~------------~~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i 149 (437)
++.|.+... .+ + ++...++++.+..+|+|+|.+.||||||++|+++|+++|++|++|+|
T Consensus 733 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i 812 (850)
T TIGR01693 733 LQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI 812 (850)
T ss_pred HHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEE
Confidence 665544321 11 0 01113445778899999999999999999999999999999999999
Q ss_pred EecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722 150 WTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL 188 (437)
Q Consensus 150 ~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL 188 (437)
.|.++++.|+|+|++ ..|.++.+ ++++.|+++|.++|
T Consensus 813 ~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 813 TTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred EecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999999 47899865 78899999998876
No 11
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=7.2e-24 Score=233.27 Aligned_cols=154 Identities=27% Similarity=0.365 Sum_probs=134.4
Q ss_pred CCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHH
Q 013722 233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMA 312 (437)
Q Consensus 233 ~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~ 312 (437)
..|.|.+++.. .+.++|+|+|+||||||+++|++|+.+|+||++|+|+|.+|+++|+|+|.+++|.+.. ++++++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~----~~~l~~ 660 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPD----AALLRQ 660 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcch----HHHHHH
Confidence 45788888888 9999999999999999999999999999999999999988999999999999987653 356666
Q ss_pred HHHHHHh-----------hccC-----------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEe
Q 013722 313 CLEAAIE-----------RRAS-----------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEI 358 (437)
Q Consensus 313 ~L~~~l~-----------~~~~-----------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I 358 (437)
.|+++|. ++.+ ..|+|+|.+.|||||||+|+.+|.++|+||++|+|
T Consensus 661 ~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI 740 (774)
T PRK03381 661 DLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV 740 (774)
T ss_pred HHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEE
Confidence 6666542 1100 03899999999999999999999999999999999
Q ss_pred eecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013722 359 STMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIG 392 (437)
Q Consensus 359 ~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~ 392 (437)
.|.|++|+|+|||+|.+|.+++++ +++|+++|.
T Consensus 741 ~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~ 773 (774)
T PRK03381 741 ATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL 773 (774)
T ss_pred eecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence 999999999999999999999866 788888775
No 12
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1.5e-23 Score=232.32 Aligned_cols=175 Identities=23% Similarity=0.275 Sum_probs=140.9
Q ss_pred CCCEEEEee-CCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCc-HHHHHH
Q 013722 13 NPPRVVIDN-DVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGD-QATISY 89 (437)
Q Consensus 13 ~~~~V~v~~-~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~-~~~~~~ 89 (437)
..|.|.+.. ....+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|.+... ....+.
T Consensus 675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~ 754 (869)
T PRK04374 675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAA 754 (869)
T ss_pred CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHH
Confidence 467777655 66678999999999999999999999999999999999987 799999999999998874211 123334
Q ss_pred HHHHHhhccCc--c--c-----------CcceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCc
Q 013722 90 IKTTVETNASF--L--N-----------SMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNA 154 (437)
Q Consensus 90 l~~~L~~~~~~--~--~-----------~~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~ 154 (437)
|+++|.+.... . + ++...++++.+...|+|+|.+.||||||++|+++|+.+|+||++|+|+|.|+
T Consensus 755 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~ 834 (869)
T PRK04374 755 LRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGE 834 (869)
T ss_pred HHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCC
Confidence 44455442210 0 0 0111234567778999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722 155 RAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR 189 (437)
Q Consensus 155 ~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~ 189 (437)
++.|+|+|+++ .|.++.++++ +.|+++|.++|.
T Consensus 835 ~a~D~F~V~d~-~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 835 RAEDQFQITDE-HDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred EEEEEEEEECC-CCCcCChHHH-HHHHHHHHHHhc
Confidence 99999999994 7888766666 999999998884
No 13
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=9.2e-24 Score=234.41 Aligned_cols=158 Identities=20% Similarity=0.276 Sum_probs=138.2
Q ss_pred CCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHHH
Q 013722 233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRVM 311 (437)
Q Consensus 233 ~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l~ 311 (437)
..|.|.+...++.+.++|+|+++||||||+++|++|+.+|+||++|+|+|+ +|+++|+|+|++++|. ...+.++++|+
T Consensus 664 ~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~ 742 (856)
T PRK03059 664 DTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVE 742 (856)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHH
Confidence 467888888889999999999999999999999999999999999999886 6999999999999888 44566899999
Q ss_pred HHHHHHHhh----------ccC--------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec
Q 013722 312 ACLEAAIER----------RAS--------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM 361 (437)
Q Consensus 312 ~~L~~~l~~----------~~~--------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~ 361 (437)
+.|+++|.. +.| ..|+|+|.++|||||||+|+.+|.++|+||++|+|.|.
T Consensus 743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~ 822 (856)
T PRK03059 743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL 822 (856)
T ss_pred HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec
Confidence 999988731 111 13899999999999999999999999999999999999
Q ss_pred CCeEEEEEEEEcCCCCCC-ChHHHHHHHHHHhhc
Q 013722 362 GRKVKDTFFVTDASGNPV-DPKIVDSIQHQIGRT 394 (437)
Q Consensus 362 g~~a~D~F~v~d~~g~~l-~~~~~~~l~~~L~~~ 394 (437)
|++|+|+|||++ .++ +++++++|++.|.++
T Consensus 823 ~~~v~DvF~V~~---~~~~~~~~~~~l~~~L~~~ 853 (856)
T PRK03059 823 GERVEDTFLIDG---SGLSDNRLQIQLETELLDA 853 (856)
T ss_pred CCEEEEEEEEcC---CCCCCHHHHHHHHHHHHHH
Confidence 999999999954 334 356788999999874
No 14
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=2.2e-23 Score=231.35 Aligned_cols=173 Identities=17% Similarity=0.296 Sum_probs=142.9
Q ss_pred cCCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHH
Q 013722 12 MNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYI 90 (437)
Q Consensus 12 ~~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l 90 (437)
...|.|.+.+....+.++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|. ...+..+++|
T Consensus 663 ~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i 741 (856)
T PRK03059 663 TDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLV 741 (856)
T ss_pred CCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHH
Confidence 346888898888889999999999999999999999999999999999975 78999999999998887 3444566666
Q ss_pred HHHHhhccC----cc----cC---------cc--eeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 91 KTTVETNAS----FL----NS---------MR--SSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT 151 (437)
Q Consensus 91 ~~~L~~~~~----~~----~~---------~~--r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T 151 (437)
++.|..... .. .. .+ ..++++++.+.|+|+|.++||||||++|+++|+.+|+||++|+|+|
T Consensus 742 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T 821 (856)
T PRK03059 742 EHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT 821 (856)
T ss_pred HHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence 666555321 11 00 00 1233466778999999999999999999999999999999999999
Q ss_pred cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722 152 HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR 189 (437)
Q Consensus 152 ~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~ 189 (437)
.|+++.|+|+|+++ +..+++++++|++.|.++|.
T Consensus 822 ~~~~v~DvF~V~~~----~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 822 LGERVEDTFLIDGS----GLSDNRLQIQLETELLDALA 855 (856)
T ss_pred cCCEEEEEEEEcCC----CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999653 23468899999999998874
No 15
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=2.9e-23 Score=233.20 Aligned_cols=179 Identities=25% Similarity=0.369 Sum_probs=154.3
Q ss_pred CCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHHH
Q 013722 13 NPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYIK 91 (437)
Q Consensus 13 ~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~ 91 (437)
.++.|.+++....+.++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++++|.+..+++.++.|+
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 45788899988889999999999999999999999999999999999987 78999999999999998876666777777
Q ss_pred HHHhhccC----cc-----c-Cc-----------ceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722 92 TTVETNAS----FL-----N-SM-----------RSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW 150 (437)
Q Consensus 92 ~~L~~~~~----~~-----~-~~-----------~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~ 150 (437)
+.|..... .+ . .. ...++++.+..+|+|+|.+.||||||++|+++|+++|+||.+|+|.
T Consensus 798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~ 877 (931)
T PRK05092 798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA 877 (931)
T ss_pred HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence 77655431 10 0 01 1124456777889999999999999999999999999999999999
Q ss_pred ecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhccCC
Q 013722 151 THNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTNG 192 (437)
Q Consensus 151 T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g~~ 192 (437)
|.++++.|+|+|++. .|.++.++++++.|+++|.++|.++.
T Consensus 878 T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~L~~~L~~~~ 918 (931)
T PRK05092 878 TYGERAVDVFYVTDL-FGLKITNEARQAAIRRALLAALAEGE 918 (931)
T ss_pred EcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence 999999999999994 88888888889999999999998755
No 16
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=3.1e-23 Score=228.31 Aligned_cols=169 Identities=20% Similarity=0.210 Sum_probs=140.5
Q ss_pred CCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 013722 13 NPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKT 92 (437)
Q Consensus 13 ~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~ 92 (437)
.+|.|.+.+.. .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|+++|+|+|.+++|.+...+...+.|++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~ 664 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR 664 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence 57899998888 89999999999999999999999999999999999999999999999999998886543445566666
Q ss_pred HHhhccCc-----ccC-c-------------ceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC
Q 013722 93 TVETNASF-----LNS-M-------------RSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN 153 (437)
Q Consensus 93 ~L~~~~~~-----~~~-~-------------~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~ 153 (437)
+|.+.... ... . ...+++..+...|+|+|.++||||||++|+++|+.+|+||++|+|.|.|
T Consensus 665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g 744 (774)
T PRK03381 665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG 744 (774)
T ss_pred HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 66653211 000 0 0123346666789999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 154 ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 154 ~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
+++.|+|||+++ .|.+++++ .+.|+++|.
T Consensus 745 ~~a~D~F~V~d~-~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 745 ADVVDVFYVTGA-AGGPLADA--RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEEECC-CCCcCchH--HHHHHHHhh
Confidence 999999999994 88888654 677777764
No 17
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=3.7e-23 Score=232.35 Aligned_cols=165 Identities=23% Similarity=0.287 Sum_probs=148.2
Q ss_pred CCcEEEEEecCCCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHHH
Q 013722 233 SRPHVTILDCSDRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRVM 311 (437)
Q Consensus 233 ~~p~V~v~~~~~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l~ 311 (437)
.++.|.+++.++.++++|+|+++||||||++++++|+.+|+||++|+|+|+ +|+++|+|+|++++|.+..+++.+++|+
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 457788899888999999999999999999999999999999999999995 7899999999999998877788999999
Q ss_pred HHHHHHHhh----------c-cC---------------------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEee
Q 013722 312 ACLEAAIER----------R-AS---------------------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEIS 359 (437)
Q Consensus 312 ~~L~~~l~~----------~-~~---------------------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~ 359 (437)
+.|++++.. + .+ ..|+|+|.+.|||||||+|+++|.++|+||++|+|.
T Consensus 798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~ 877 (931)
T PRK05092 798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA 877 (931)
T ss_pred HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence 999888721 1 11 137999999999999999999999999999999999
Q ss_pred ecCCeEEEEEEEEcCCCCCCCh-HHHHHHHHHHhhcccc
Q 013722 360 TMGRKVKDTFFVTDASGNPVDP-KIVDSIQHQIGRTILQ 397 (437)
Q Consensus 360 T~g~~a~D~F~v~d~~g~~l~~-~~~~~l~~~L~~~~~~ 397 (437)
|.|+++.|+|||++.+|.++.+ +.+++|+++|.+++.+
T Consensus 878 T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 878 TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999964 5778999999987654
No 18
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.2e-23 Score=220.68 Aligned_cols=177 Identities=24% Similarity=0.314 Sum_probs=147.2
Q ss_pred cCCCEEEEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHH
Q 013722 12 MNPPRVVIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYI 90 (437)
Q Consensus 12 ~~~~~V~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l 90 (437)
..+|.|.+......+.++|+|++||+|.||+.+|+.+...|+||++|+|+| .+|+++|+|+|.+++|.++. +++...+
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~ 747 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL 747 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence 577999999888889999999999999999999999999999999999986 88999999999999999887 4555666
Q ss_pred HHHHhhcc----Cccc---Ccce-----------eeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec
Q 013722 91 KTTVETNA----SFLN---SMRS-----------SVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH 152 (437)
Q Consensus 91 ~~~L~~~~----~~~~---~~~r-----------~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~ 152 (437)
++.|.+.. ..|. .++| .+.++.+...|+|+|.+.||||||+.|+++|++++++|++|+|+|.
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~ 827 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence 66555442 1111 1111 2334666789999999999999999999999999999999999999
Q ss_pred CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhccC
Q 013722 153 NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRTN 191 (437)
Q Consensus 153 ~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g~ 191 (437)
|++++|+|+|++. .|.++ +++..+.+.+.+.+++...
T Consensus 828 GErveD~F~vt~~-~~~~l-~~~~~q~l~~~ll~al~~~ 864 (867)
T COG2844 828 GERVEDVFIVTDA-DGQAL-NAELRQSLLQRLLEALLPN 864 (867)
T ss_pred cccceeEEEEecc-ccccC-CHHHHHHHHHHHHHHhccc
Confidence 9999999999994 88888 5556677777777766543
No 19
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.83 E-value=2.1e-20 Score=144.74 Aligned_cols=68 Identities=28% Similarity=0.489 Sum_probs=64.5
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCC-hHHHHHHHHHHhh
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVD-PKIVDSIQHQIGR 393 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~-~~~~~~l~~~L~~ 393 (437)
|+|||.++|||||||+|+++|+++|++|++|||+|+|++|+|+|||+|.+|+|++ ++.+++|+++|..
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 7999999999999999999999999999999999999999999999999999996 5788899998864
No 20
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.83 E-value=2.6e-20 Score=145.20 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=66.1
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCC-hHHHHHHHHHHhhcc
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVD-PKIVDSIQHQIGRTI 395 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~-~~~~~~l~~~L~~~~ 395 (437)
|+|||.++|||||||+|+++|.++|++|++|+|+|+|++|+|+|||++.+|.|++ ++++++|+++|.+++
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al 72 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAI 72 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999997 467889999998854
No 21
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.80 E-value=2.3e-19 Score=139.91 Aligned_cols=70 Identities=24% Similarity=0.374 Sum_probs=65.0
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEee--ecCCeEEEEEEEEcCCCCCCC-hHHHHHHHHHHhhccc
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEIS--TMGRKVKDTFFVTDASGNPVD-PKIVDSIQHQIGRTIL 396 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~--T~g~~a~D~F~v~d~~g~~l~-~~~~~~l~~~L~~~~~ 396 (437)
|+|+|.+.|||||||+|+++|+++|++|++|||+ |+|++|+|+||| +.+|+|++ +++++.|+++|.+++.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999 999999999999 78899986 5788999999998653
No 22
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.71 E-value=7.5e-17 Score=125.81 Aligned_cols=73 Identities=25% Similarity=0.346 Sum_probs=69.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722 116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR 189 (437)
Q Consensus 116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~ 189 (437)
+|+|+|.++||||||++|+++|+++|++|.+|+|.|.|+++.|+|||++ ..|.++.++++.+.|+++|.++|.
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999999999999 589999999999999999998875
No 23
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.69 E-value=1.8e-16 Score=122.76 Aligned_cols=69 Identities=29% Similarity=0.409 Sum_probs=65.4
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
+|+|+|.++||||||++|+++|+++|++|++|+|.|.|+++.|+|||++ ..|.++.++++++.|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999999999999999 48999988999999998875
No 24
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=9.1e-16 Score=119.70 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=67.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE--ecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW--THNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT 190 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~--T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g 190 (437)
|+++|.++||||||++|+++|+++|++|++|+|. |.|+++.|+||| + ..|.++.++++.+.|+++|.++|..
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999999 999999999999 6 4788898999999999999988754
No 25
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=9.3e-15 Score=114.62 Aligned_cols=73 Identities=60% Similarity=0.898 Sum_probs=68.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCC-CCcCCCHHHHHHHHHHHhhhhcc
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSS-GCAIEDQKRLLKIKKLLCNVLRT 190 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~-g~~~~~~~~~~~l~~~L~~aL~g 190 (437)
|+|+|.++||||||++|+++|+.+|+||++|+++|.++++.|+|+|+++ . +.++.++++++++++.|.++|.|
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999999999999995 5 77777888999999999998875
No 26
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.59 E-value=3.1e-14 Score=131.22 Aligned_cols=157 Identities=15% Similarity=0.216 Sum_probs=110.6
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhcc---Cc
Q 013722 24 CEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNA---SF 100 (437)
Q Consensus 24 ~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~---~~ 100 (437)
...+++|+++++||||+++.++++|+++||||.+.+....+|.+.-++.| .+.+ ...+.|+.+|.... .+
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~~----~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGSW----NAITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCCh----hHHHHHHHHHHhhhhhcCe
Confidence 45789999999999999999999999999999999999999988777777 3333 35567777776543 11
Q ss_pred ccCcceeee--ecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCc--eeEEEEEEEeCCCCCcCCCHHH
Q 013722 101 LNSMRSSVG--VVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNA--RAAALLHVKDQSSGCAIEDQKR 176 (437)
Q Consensus 101 ~~~~~r~v~--~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~--~~~d~F~V~~~~~g~~~~~~~~ 176 (437)
.....+.-. .......+.++|.+.||||++++||++|+.+|+||.+.+..|.+. .....|...- .-.-|. ...
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~-~v~lP~--~~~ 154 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQI-TAHSPA--SQD 154 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEE-EEEcCC--CCC
Confidence 111111000 011122589999999999999999999999999999999988764 3444554433 111221 223
Q ss_pred HHHHHHHHhhhhcc
Q 013722 177 LLKIKKLLCNVLRT 190 (437)
Q Consensus 177 ~~~l~~~L~~aL~g 190 (437)
...|+++|.+....
T Consensus 155 ~~~L~~~l~~l~~e 168 (190)
T PRK11589 155 AANIEQAFKALCTE 168 (190)
T ss_pred HHHHHHHHHHHHHH
Confidence 47777777755544
No 27
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=8.4e-15 Score=114.87 Aligned_cols=70 Identities=26% Similarity=0.409 Sum_probs=64.5
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCC-CCCCCh-HHHHHHHHHHhhcc
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDAS-GNPVDP-KIVDSIQHQIGRTI 395 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~-g~~l~~-~~~~~l~~~L~~~~ 395 (437)
|+|+|.++|||||+++|+++|+++|+||++|+|.|.|+++.|+|||+|.+ |.++.+ ++++++++.|.+++
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999987 888854 67799999998754
No 28
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=1.1e-14 Score=114.75 Aligned_cols=69 Identities=35% Similarity=0.467 Sum_probs=61.5
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee-cCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEIST-MGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTI 395 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T-~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~ 395 (437)
++||.++|||||||+|+++|+++|++|++|+|.| .|+++.|+|||+|.+|+..+++.+++++++|.+++
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L 71 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVL 71 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999997 89999999999998777445567788888887753
No 29
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.56 E-value=2.7e-14 Score=111.67 Aligned_cols=69 Identities=33% Similarity=0.476 Sum_probs=63.3
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec-CCeEEEEEEEEcCCCCCCC-hHHHHHHHHHHhhc
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTM-GRKVKDTFFVTDASGNPVD-PKIVDSIQHQIGRT 394 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~-g~~a~D~F~v~d~~g~~l~-~~~~~~l~~~L~~~ 394 (437)
+.|+|.++||||||++|+.+|+.+|+||++|+|.|. ++++.|+|||++.+|.++. +++.+++++.|.++
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999998 5999999999999999885 56788999998875
No 30
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.54 E-value=6.2e-14 Score=109.60 Aligned_cols=69 Identities=29% Similarity=0.490 Sum_probs=63.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722 28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSD-GGYLMDVFYVTDINGQKIGDQATISYIKTTVET 96 (437)
Q Consensus 28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 96 (437)
++|+|+++||||||++++++|+.+|+||++|+|+|. +|+++|+|+|++++|.++.++.++++|++.|.+
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999986 799999999999999887777788889988865
No 31
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.48 E-value=3e-13 Score=106.59 Aligned_cols=71 Identities=27% Similarity=0.384 Sum_probs=64.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT 190 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g 190 (437)
+++|.++||||||++|+++|+.+|+||++|+|.| .++++.|+|+|+++ .+. ..+++++++++++|.++|..
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999997 89999999999995 555 44678999999999988864
No 32
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.45 E-value=1.7e-12 Score=119.65 Aligned_cols=121 Identities=11% Similarity=0.067 Sum_probs=93.5
Q ss_pred CCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHh----
Q 013722 244 DRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIE---- 319 (437)
Q Consensus 244 ~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~---- 319 (437)
...+..|+++++||||+.+++++.|+++||||.+.+....+|+---.+.|..+ +...+.|+..|...-+
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~-------~~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS-------WNAITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC-------hhHHHHHHHHHHhhhhhcCe
Confidence 45678999999999999999999999999999999999987732234444222 2356677776655321
Q ss_pred ----hcc-C-------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCC--eEEEEEEE
Q 013722 320 ----RRA-S-------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGR--KVKDTFFV 371 (437)
Q Consensus 320 ----~~~-~-------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~--~a~D~F~v 371 (437)
++. + .++.++|.+.||||+++.||++|+++||||...+-.|++. ...+.|..
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~ 143 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHI 143 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEE
Confidence 121 1 1379999999999999999999999999999999999984 55555554
No 33
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.41 E-value=1.6e-12 Score=99.41 Aligned_cols=52 Identities=29% Similarity=0.364 Sum_probs=49.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCC
Q 013722 28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQ 79 (437)
Q Consensus 28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~ 79 (437)
.+|+|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|.+.+|.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~ 54 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG 54 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc
Confidence 58999999999999999999999999999999985 78999999999998886
No 34
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.39 E-value=2.6e-12 Score=98.29 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=54.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH
Q 013722 248 TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTG-RMEAYQEYYIKHVDGFPISSEAERQRVMACLEAA 317 (437)
Q Consensus 248 t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~-~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 317 (437)
.+|+|+++||||||++++++|..+|+||++|+|+|+ +|+++|+|+|++.+|. ....|+++|.++
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~ 66 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKE 66 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHh
Confidence 589999999999999999999999999999999986 6999999999999885 334444554443
No 35
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.36 E-value=6.3e-12 Score=97.98 Aligned_cols=69 Identities=57% Similarity=0.967 Sum_probs=63.0
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
++.|+|.++||||+|++|+.+|+++|+||.+|++.|.++.+.|+|+|.+.+|.+++++..++++++|..
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~~ 69 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIGP 69 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhcc
Confidence 367999999999999999999999999999999999988999999999999988866677888888874
No 36
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.31 E-value=1.9e-11 Score=95.29 Aligned_cols=68 Identities=31% Similarity=0.564 Sum_probs=62.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722 28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVET 96 (437)
Q Consensus 28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 96 (437)
++|+|+++|+||+|++++++|+++|+||.+|.++|.+++++|+|+|.++++.++ +++++++|+++|..
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~ 69 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGP 69 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999988889999999999988877 55788889988864
No 37
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.31 E-value=8.7e-12 Score=110.42 Aligned_cols=157 Identities=14% Similarity=0.206 Sum_probs=116.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccC---cc
Q 013722 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNAS---FL 101 (437)
Q Consensus 25 ~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~---~~ 101 (437)
+++++|+++++||||+...+++...++||||.++++...|+.+.-+..| .|.| +....|+++|....+ +.
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li---sgs~----dav~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI---SGSW----DAVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE---eeCH----HHHHHHHHHhhcccccCCeE
Confidence 4678999999999999999999999999999999999999887755545 4554 567889998876532 21
Q ss_pred cCcceeee-e-cCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEeCCCCCcCCCHHHH
Q 013722 102 NSMRSSVG-V-VPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKDQSSGCAIEDQKRL 177 (437)
Q Consensus 102 ~~~~r~v~-~-~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~ 177 (437)
..+.|.-. . ......+.+.|.+.||||++.++|..|..+|+||++....| -.+.-.-.|...- .-..|. ....
T Consensus 76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa--~~~i 152 (176)
T COG2716 76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPA--NLSI 152 (176)
T ss_pred EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCC--cCcH
Confidence 12222211 1 34456788999999999999999999999999999998888 3345566776655 234444 3455
Q ss_pred HHHHHHHhhhhccCC
Q 013722 178 LKIKKLLCNVLRTNG 192 (437)
Q Consensus 178 ~~l~~~L~~aL~g~~ 192 (437)
..|+++|++ |.++.
T Consensus 153 ~~l~~~f~a-l~~~L 166 (176)
T COG2716 153 SALRDAFEA-LCDEL 166 (176)
T ss_pred HHHHHHHHH-HHHhh
Confidence 778888774 44444
No 38
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.28 E-value=4e-11 Score=129.98 Aligned_cols=144 Identities=17% Similarity=0.099 Sum_probs=120.2
Q ss_pred EEEEEEe-CCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc-cCcc
Q 013722 28 TVIQVDS-VNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL-NSMR 105 (437)
Q Consensus 28 ~~I~V~~-~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~-~~~~ 105 (437)
-.++|.. +|++|+|.+++++|+.+|++|.+|++.+ +|.++..|.|....|.+++.....+.++.++.+..+.. ..++
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT 625 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence 5777777 9999999999999999999999999999 78788999999999998877777777888887765432 2345
Q ss_pred eeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 106 SSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 106 r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
+.+.+. ++++|.+.||||+|+.|+++|. +|.+|++.|.|..+.|.|++... . ...+++.++.
T Consensus 626 ~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~--------~-~r~~~~~~~~ 687 (693)
T PRK00227 626 ATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG--------F-DRATVERDVT 687 (693)
T ss_pred ceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc--------c-cHHHHHHHHH
Confidence 554442 7999999999999999999999 89999999999999999999851 1 1266778888
Q ss_pred hhhcc
Q 013722 186 NVLRT 190 (437)
Q Consensus 186 ~aL~g 190 (437)
.+|.+
T Consensus 688 ~~~~~ 692 (693)
T PRK00227 688 RVLAG 692 (693)
T ss_pred HHHhc
Confidence 77765
No 39
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.26 E-value=5.3e-11 Score=91.69 Aligned_cols=69 Identities=45% Similarity=0.782 Sum_probs=63.6
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRT 394 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~ 394 (437)
|.++|.++||||+|++|+++|.++|++|.++++.|.++.+.|.|++.+.+|.+.+.+..++|++.|.++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 579999999999999999999999999999999999899999999999999986666778899998774
No 40
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.25 E-value=4.1e-11 Score=129.88 Aligned_cols=135 Identities=15% Similarity=0.128 Sum_probs=108.3
Q ss_pred eEEEEEe-CCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHh--hcc-C
Q 013722 248 TAVTIRS-KDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIE--RRA-S 323 (437)
Q Consensus 248 t~V~V~~-~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~--~~~-~ 323 (437)
-.++|.. +|++|++.++++.|+.++++|..|++.+ +|.++..|.|...-|.+.+.....+.++.++...+. ... |
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT 625 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence 4677777 9999999999999999999999999999 888889999999999888776555555544433221 111 1
Q ss_pred C----CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013722 324 E----GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRT 394 (437)
Q Consensus 324 ~----~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~ 394 (437)
+ ++++||++.||||+|++|+++|. .|.+|+++|.|..++|.||++. +..+.++.+++..+
T Consensus 626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~-------~~~r~~~~~~~~~~ 689 (693)
T PRK00227 626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP-------GFDRATVERDVTRV 689 (693)
T ss_pred ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC-------cccHHHHHHHHHHH
Confidence 1 58999999999999999999999 8999999999999999999972 12345566666554
No 41
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.14 E-value=3.8e-10 Score=86.82 Aligned_cols=70 Identities=39% Similarity=0.557 Sum_probs=63.3
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL 188 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL 188 (437)
|.+.|.++|+||+|++|+++|+.+|++|.++++.|.++.+.+.|+++++ .+.+. +.++++++++.|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~~-~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQPL-DPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence 5789999999999999999999999999999999988899999999994 77775 6789999999998764
No 42
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.02 E-value=1.3e-09 Score=96.79 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=96.7
Q ss_pred CCCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCC-eEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH-----
Q 013722 244 DRDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRM-EAYQEYYIKHVDGFPISSEAERQRVMACLEAA----- 317 (437)
Q Consensus 244 ~~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g-~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~----- 317 (437)
...++.|+++++||||+...+++...+.|||+.+.|+...++ ++. .. ...| +|+...+|+.+|...
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~-i~---lisg----s~dav~~le~~l~~l~~~~~ 73 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAG-IM---LISG----SWDAVTLLEATLPLLGAELD 73 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeE-EE---EEee----CHHHHHHHHHHhhcccccCC
Confidence 346789999999999999999999999999999999988765 553 22 2233 266777877776542
Q ss_pred H----hhccC-------CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEEEcCCCCCCC
Q 013722 318 I----ERRAS-------EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFVTDASGNPVD 380 (437)
Q Consensus 318 l----~~~~~-------~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v~d~~g~~l~ 380 (437)
| .+..+ ..+.++|.+.||||++.++|+.|.++||||++..-.|+. ....-.|...-.-+-|.+
T Consensus 74 L~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~ 149 (176)
T COG2716 74 LLVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN 149 (176)
T ss_pred eEEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc
Confidence 1 11111 257999999999999999999999999999999998873 233346776443344544
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.95 E-value=9.2e-09 Score=78.71 Aligned_cols=69 Identities=42% Similarity=0.753 Sum_probs=61.3
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRT 394 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~ 394 (437)
+.+.|.++|+||+|++|+.+|.++|++|.++++.|.+++..+.|++.+.++.+.++++++.+++.|..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 368999999999999999999999999999999999889999999998887776556778888888663
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.82 E-value=4.1e-08 Score=75.04 Aligned_cols=70 Identities=34% Similarity=0.581 Sum_probs=60.6
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL 188 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL 188 (437)
+.+.|.++|+||+|++|+++|+.+|++|.++++.+.++...+.|++..+ .+.+. ++++++.+++.|..++
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~~~~l~~~l~~~~ 70 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRPL-DPERIARLEEALEDAL 70 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence 3688999999999999999999999999999999976799999999985 55554 5678899999887653
No 45
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.67 E-value=2e-07 Score=73.29 Aligned_cols=67 Identities=21% Similarity=0.389 Sum_probs=56.1
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722 116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT 190 (437)
Q Consensus 116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g 190 (437)
..+|++.|+||||+++.++++|+++|+||.+.+..+.+++...++.|+-+ +...++|+++|.+....
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999884 44668888888765443
No 46
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.67 E-value=8e-07 Score=74.03 Aligned_cols=125 Identities=15% Similarity=0.085 Sum_probs=93.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH-HhhccCCCcE
Q 013722 249 AVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAA-IERRASEGLE 327 (437)
Q Consensus 249 ~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~-l~~~~~~~~~ 327 (437)
+|+|+..++||-++.++..|...|+||....|.-++.+-+-.++|..++-. ...|+++ + -.....+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A-----------~~~Lee~gF--~Vr~~dV 71 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEA-----------HSVLEEAGF--TVRETDV 71 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHH-----------HHHHHHCCc--EEEeeeE
Confidence 689999999999999999999999999999998888888888888776431 1223320 0 0011247
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec-CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTM-GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTIL 396 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~-g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~ 396 (437)
+-|+.+|+||=|..|+.+|.++++|+.++..-+. .++|.=+|.+ ++.++...+|+++..
T Consensus 72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~----------ed~d~~~~aLed~gi 131 (142)
T COG4747 72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV----------EDIDRAIKALEDAGI 131 (142)
T ss_pred EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh----------hHHHHHHHHHHHcCC
Confidence 8899999999999999999999999999887443 4556544444 345666677776543
No 47
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.62 E-value=1.1e-06 Score=73.18 Aligned_cols=114 Identities=23% Similarity=0.263 Sum_probs=88.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCccee
Q 013722 28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSS 107 (437)
Q Consensus 28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~r~ 107 (437)
-+|+|+..|+||-|+..+..|.+.|+||..-.|.-.+.+.+-.+.|.++ ++-.++|.+.. + .
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~g-F------~ 65 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEAG-F------T 65 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHCC-c------E
Confidence 4799999999999999999999999999988887777766666666221 23455666642 1 1
Q ss_pred eeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEEe
Q 013722 108 VGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKD 164 (437)
Q Consensus 108 v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~~ 164 (437)
|. ..-++.|...|+||-|+.|+++|.++++|+..+..++. ...+.-+|.+.+
T Consensus 66 Vr-----~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 66 VR-----ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred EE-----eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 11 24578899999999999999999999999999999984 445555555544
No 48
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.56 E-value=7.7e-07 Score=69.97 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=52.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhc
Q 013722 27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETN 97 (437)
Q Consensus 27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 97 (437)
+..|++.++||||+++.++++|+++|+||.+.+..+.++.+.-.+.|.-+ ++..+.|+++|...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998877878544 24567788887764
No 49
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.51 E-value=3.5e-07 Score=67.39 Aligned_cols=67 Identities=21% Similarity=0.387 Sum_probs=57.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhc
Q 013722 28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETN 97 (437)
Q Consensus 28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 97 (437)
++|+|.+||+.||-.++++++.+.|++|..+.++|+|.|++-+|+|...... + .-+++.|++.|.+.
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~-~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS-I--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC-C--cccHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999754322 1 23667788888764
No 50
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.40 E-value=8.5e-07 Score=69.45 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=53.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT 190 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g 190 (437)
+++|.|+||||++++++++|+++|+||.+.+..+.++...-.|.+.-| .+. ..+.|+++|......
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l~~~ 66 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFKAHE 66 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999988888888888888764 221 236677777755443
No 51
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.39 E-value=1.9e-06 Score=67.99 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=48.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722 28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVET 96 (437)
Q Consensus 28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 96 (437)
++|++.||||||+.+++++.|+++|+||.+.+.++.++++.-.+.+..+ +. ..+.|++.|..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~----~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WD----AIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cc----cHHHHHHHHHH
Confidence 6899999999999999999999999999999999988887655555422 11 23456655554
No 52
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.33 E-value=2.7e-06 Score=64.02 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=35.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCc
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNA 154 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~ 154 (437)
|.|.|.++||||+|++|+.+|+++|+||..+.+.+.++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 57899999999999999999999999999999999665
No 53
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.32 E-value=4.1e-06 Score=63.02 Aligned_cols=63 Identities=24% Similarity=0.350 Sum_probs=45.9
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
|.|.|..+||||+|++|+++|+++|+||.++...+.++.....|.+... +....+++.++|.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV-----DEEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE-----EGHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC-----CCCCHHHHHHHHHc
Confidence 5789999999999999999999999999999999987743333333211 12344555555544
No 54
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.28 E-value=4.8e-06 Score=65.61 Aligned_cols=63 Identities=22% Similarity=0.410 Sum_probs=50.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV 187 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a 187 (437)
.++++.|+||||+++.|+++|+++|+||.+.+.++.+++..-...+..+ . ...+.|++.|...
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~------~~~~~l~~~l~~~ 64 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--W------DAIAKLEAALPGL 64 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--c------ccHHHHHHHHHHH
Confidence 5799999999999999999999999999999999988887666666652 1 1246777777753
No 55
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.25 E-value=4.4e-06 Score=65.41 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=44.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCC
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASG 376 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g 376 (437)
+++|.++||||++++|+++|+++|+||...+-++++++-.-.|.+.-+.+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~ 50 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS 50 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence 47899999999999999999999999999999999888777888865443
No 56
>PRK07431 aspartate kinase; Provisional
Probab=98.15 E-value=0.0021 Score=69.84 Aligned_cols=283 Identities=14% Similarity=0.160 Sum_probs=157.8
Q ss_pred eCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCcceeeeecC
Q 013722 34 SVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVP 112 (437)
Q Consensus 34 ~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~r~v~~~~ 112 (437)
.++.+|+++++...|+++|+||..-..+. ..+..--.|.|...+- +...+.|+ .|...... -.+ ..
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~-~l~~~~~~-----~~i--~~ 344 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAE-AIAPALGG-----AEV--LV 344 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHH-HHHHHcCC-----CcE--EE
Confidence 57899999999999999999999665443 2332223466632111 11112222 22211110 011 12
Q ss_pred CCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722 113 SKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR 189 (437)
Q Consensus 113 ~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~ 189 (437)
..+...|+|.+. ++||+++++..+|++.|++|.... + .-..+..+-+ +...++..+.|++.+.
T Consensus 345 ~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s---Se~~Is~vv~---------~~d~~~av~~Lh~~f~ 410 (587)
T PRK07431 345 ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T---SEVKVSCVID---------AEDGDKALRAVCEAFE 410 (587)
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c---CCCEEEEEEc---------HHHHHHHHHHHHHHhc
Confidence 235778888885 789999999999999999997665 2 2223323332 1223445555666554
Q ss_pred cCCCCCCCCcccccccccccchhhhhhhhcccccccccccCCCCCcEEEEEecCCCCeeEEEEE-eCCCCchHHHHHHHH
Q 013722 190 TNGDLRTPSMSISSARVLHGERRLHQMLFADRDFERLDCVNYNSRPHVTILDCSDRDYTAVTIR-SKDRPKLLFDTVCCL 268 (437)
Q Consensus 190 g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~t~V~V~-~~DrpgL~~~v~~~L 268 (437)
-+..- ..+.+++ .+ .+ ..+.--+.. ..+...|++. .++.+|.++++...|
T Consensus 411 ~~~~~----------------~~~~~~~--~~-~~--------~~~v~gIa~--~~~~~~i~l~~~~~~~g~~a~if~~l 461 (587)
T PRK07431 411 LEDSQ----------------IEINPTA--SG-QD--------EPEVRGVAL--DRNQAQLAIRNVPDRPGMAASIFGAL 461 (587)
T ss_pred cCCcc----------------cccCccc--cC-CC--------CCcEEEEEc--cCCEEEEEECCCCCCccHHHHHHHHH
Confidence 43210 0111110 00 00 111112221 2233344443 678899999999999
Q ss_pred HhCCCeEEEEEEEec-C--CeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhccC--------CCcEEEEEeC---C
Q 013722 269 TDMQYVVYHGTVVTG-R--MEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRAS--------EGLELELYTD---D 334 (437)
Q Consensus 269 ~~~~lnI~~a~i~t~-~--g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~--------~~~~iev~~~---D 334 (437)
++.++||..-..... + |..--.|.+... ......+.+++ +.+..+ .-..|.|.+. .
T Consensus 462 ~~~~i~id~i~~~~~~~~~~~~~isf~v~~~---------~~~~~~~~l~~-l~~~~~~~~i~~~~~va~VSvVG~gm~~ 531 (587)
T PRK07431 462 AEANISVDMIVQSQRCRSDGTRDISFTVPKE---------DREAAQKVLRE-LAKQLPGAEVEDGPAIAKVSIVGAGMPG 531 (587)
T ss_pred HHcCCeEEEEEecCCCCCCCceeEEEEEcHH---------HHHHHHHHHHH-HHHhcCCceEEEeCCeEEEEEECCCccC
Confidence 999999998755322 1 222233554442 22222222222 222222 2357888885 7
Q ss_pred CcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEE-EEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013722 335 RFGLLSDITRILREYGLCIRRAEISTMGRKVKDT-FFVTDASGNPVDPKIVDSIQHQIGRTI 395 (437)
Q Consensus 335 rpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~-F~v~d~~g~~l~~~~~~~l~~~L~~~~ 395 (437)
+||+++++.++|.+.||++.... | .-..+ |.|. .++.++.-+.|++.+
T Consensus 532 ~~gv~~ri~~aL~~~~I~v~~i~--~---S~~~Is~vV~--------~~~~~~av~~Lh~~f 580 (587)
T PRK07431 532 TPGVAARMFRALADAGINIEMIA--T---SEIRTSCVVA--------EDDGVKALQAVHQAF 580 (587)
T ss_pred CcCHHHHHHHHHHHCCCcEEEee--c---cceEEEEEEe--------HHHHHHHHHHHHHHh
Confidence 89999999999999999997655 2 22333 5443 234455556666543
No 57
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.07 E-value=9.5e-06 Score=65.51 Aligned_cols=68 Identities=16% Similarity=0.279 Sum_probs=53.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT 190 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g 190 (437)
.++++.|+||||++++|+++|+++|+||.+.+..+.++...-.+.+.-| +... ..+.|+++|......
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~----~~~~L~~~l~~l~~~ 69 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESNL----DFAELQEELEELGKE 69 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCCC----CHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999988777777777763 2111 236777777764433
No 58
>PRK00194 hypothetical protein; Validated
Probab=97.98 E-value=1.9e-05 Score=63.86 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=51.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722 116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV 187 (437)
Q Consensus 116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a 187 (437)
.+++++.++||||++++|+++|+++|+||.+....+.++.+.-.+.+.-+ +.+. + .+.|++.|.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~-~---~~~l~~~l~~l 68 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK-D---FAELKEELEEL 68 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC-C---HHHHHHHHHHH
Confidence 67899999999999999999999999999999988877766665555543 2122 2 36677776653
No 59
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.98 E-value=2.9e-05 Score=61.26 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=47.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC------ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN------ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL 188 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~------~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL 188 (437)
++++.++|+||++++|+++|+++|+||.+.+..+.+ +...-.+.+.-| .+ . ....++++|....
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~--~----~~~~l~~~l~~l~ 70 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG--T----DLDALREELEELC 70 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC--C----CHHHHHHHHHHHH
Confidence 478999999999999999999999999999999865 334444444443 11 1 2467777777543
No 60
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.95 E-value=2.5e-05 Score=63.06 Aligned_cols=49 Identities=29% Similarity=0.308 Sum_probs=42.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeC
Q 013722 28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDI 76 (437)
Q Consensus 28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~ 76 (437)
..|++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~ 50 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS 50 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence 5789999999999999999999999999999999888777666666544
No 61
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.89 E-value=4.2e-05 Score=56.59 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=59.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL 188 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL 188 (437)
++|+|.++|+.||=.++++++.+.|++|..+.+.|.|.-.--+|+|... ..++ +-+|..|++.|.++.
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~C 68 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSAC 68 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhcC
Confidence 4799999999999999999999999999999999999999999999873 2333 568999999988764
No 62
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.89 E-value=7.6e-05 Score=58.07 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=32.4
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE
Q 013722 29 VIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS 62 (437)
Q Consensus 29 ~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t 62 (437)
+|+|.|+||||++++++++|+++|+||.+.+..+
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 4789999999999999999999999999999986
No 63
>PRK00194 hypothetical protein; Validated
Probab=97.88 E-value=5.3e-05 Score=61.30 Aligned_cols=48 Identities=25% Similarity=0.363 Sum_probs=42.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEE
Q 013722 27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVT 74 (437)
Q Consensus 27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~ 74 (437)
.+.|+|.++|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~ 50 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence 579999999999999999999999999999999988888776655554
No 64
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.87 E-value=7.1e-05 Score=58.24 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=44.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL 188 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL 188 (437)
+|++.|+||||++++|+++|+++|+||.+.+..+..+. ..|++.-. -..+. .+...+.|+++|....
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~--~~f~~~~~-~~~~~-~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDS--GRFFMRVE-FELEG-FDLSREALEAAFAPVA 67 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCC--CeEEEEEE-EEeCC-CCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999873222 12443321 11111 0012477777776543
No 65
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.85 E-value=9.5e-05 Score=58.32 Aligned_cols=48 Identities=25% Similarity=0.247 Sum_probs=39.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeC------CEEEEEEEEEeC
Q 013722 29 VIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDG------GYLMDVFYVTDI 76 (437)
Q Consensus 29 ~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~------g~~~d~F~V~~~ 76 (437)
.|+|.++|+||++++++++|+++|+||.+.+..+.+ +.+.-.+.+.-+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p 54 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP 54 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence 378999999999999999999999999999998865 555545555434
No 66
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.85 E-value=0.00015 Score=57.13 Aligned_cols=64 Identities=25% Similarity=0.389 Sum_probs=51.4
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec--CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH--NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
..+.|.|.+.||||+|++|+.+++..|+||.++.+.+. ++.+.-.|.+.-. +.+++..+-+.|+
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999983 6778888877763 5667777777665
No 67
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.78 E-value=0.00082 Score=66.05 Aligned_cols=113 Identities=11% Similarity=0.075 Sum_probs=67.5
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh-ccCcccCcc
Q 013722 29 VIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSD--GGYLMDVFYVTDINGQKIGDQATISYIKTTVET-NASFLNSMR 105 (437)
Q Consensus 29 ~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~-~~~~~~~~~ 105 (437)
+|+|.|+||||+.+.++++|+++|+||.+.+.+.. +|++.-.+.+..+ +...+ .+.|+++|.. ... ...+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~----~~~l~~~l~~~~~~-~~~l~ 75 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLE----ESSLLAAFKSALAE-KFEMT 75 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCC----HHHHHHHHHHHHHH-HhCCE
Confidence 68999999999999999999999999999999884 4766655555333 22222 2455555544 211 00111
Q ss_pred eeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEE
Q 013722 106 SSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEI 149 (437)
Q Consensus 106 r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i 149 (437)
.++.... ....|-|.+.-+-.-|..|......-.++..=+-+
T Consensus 76 i~l~~~~--~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v 117 (280)
T TIGR00655 76 WELILAD--KLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV 117 (280)
T ss_pred EEEecCC--CCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence 1222111 22344444555556666777766665555443333
No 68
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.75 E-value=0.0007 Score=66.82 Aligned_cols=118 Identities=10% Similarity=0.046 Sum_probs=66.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE--EeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccC
Q 013722 26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYIS--SDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNS 103 (437)
Q Consensus 26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~--t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~ 103 (437)
...+|+|.|+||||+.+.++++|+++|+||.+.+.+ +..+.++-.+.+.+.....++ .+.|+++|.+...- ..
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~----~~~l~~~l~~l~~~-l~ 82 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAAS----VDTFRQEFQPVAEK-FD 82 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCC----HHHHHHHHHHHHHH-hC
Confidence 456899999999999999999999999999999997 333433323333222111121 34555555443210 01
Q ss_pred cceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722 104 MRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW 150 (437)
Q Consensus 104 ~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~ 150 (437)
..-++.+.. ....|-|.+.-+..-|..|..+...-.++..=+-+-
T Consensus 83 l~~~i~~~~--~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vi 127 (289)
T PRK13010 83 MQWAIHPDG--QRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGII 127 (289)
T ss_pred CeEEEecCC--CCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEE
Confidence 111222222 223444444445556666666666655554433333
No 69
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.63 E-value=0.0014 Score=64.59 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=50.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE--eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhc
Q 013722 26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS--DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETN 97 (437)
Q Consensus 26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 97 (437)
....|+|.|+||||+.+.++++|+++|+||.+.+.++ .+|.+.-.+.+.- +..+. ..+.|+++|...
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~----~~~~L~~~L~~l 73 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIF----NLETLRADFAAL 73 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHH
Confidence 5689999999999999999999999999999999998 7776554455532 11111 145666666554
No 70
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.63 E-value=0.0004 Score=54.77 Aligned_cols=63 Identities=29% Similarity=0.415 Sum_probs=49.3
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
+.|+|.+.||||+|++|++++.+.|+||.+..+.+. ++.+.-.|.|.-. +.++++.+-+.|.+
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-----d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-----DLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-----SHHHHHHHHHHHCT
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-----CHHHHHHHHHHHHC
Confidence 579999999999999999999999999999999995 5677777777432 23567777777776
No 71
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.58 E-value=9.9e-05 Score=59.10 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=54.4
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722 116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT 190 (437)
Q Consensus 116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g 190 (437)
..+|+|.|.||||+.+.|+++|+++|+||++..-+-..+...-.+.|.-+ . +......++++|.+....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~----~~~d~~~lr~~l~~~~~~ 71 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--K----EVVDFAALRDELAAEGKK 71 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--h----HhccHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999998877777888777877663 1 123346777777765554
No 72
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.57 E-value=0.00072 Score=52.19 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=47.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
+.|.+.||||+|++|+.+++..|+||.+....+. .+.+...|.+.-+ +.++++.+.+.|+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHh
Confidence 6789999999999999999999999999888764 4666666666653 4566677666655
No 73
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.49 E-value=0.0026 Score=62.70 Aligned_cols=115 Identities=11% Similarity=0.031 Sum_probs=66.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE--eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccC
Q 013722 26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS--DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNS 103 (437)
Q Consensus 26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~ 103 (437)
....|+|.|+||||+.++++++|+++|+||.+.+..+ .++.+.-.+.+..+.+.. .+.|+++|.....- ..
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~------~~~L~~~L~~l~~~-l~ 78 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLD------EDALRAGFAPIAAR-FG 78 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCC------HHHHHHHHHHHHHH-hC
Confidence 3568999999999999999999999999999999985 345554455554343321 34566555543210 00
Q ss_pred cceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEE
Q 013722 104 MRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEI 149 (437)
Q Consensus 104 ~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i 149 (437)
....+.+... ...|.|.+.-+---|..+..+.....++..=+-+
T Consensus 79 l~i~i~~~~~--~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~v 122 (286)
T PRK13011 79 MQWELHDPAA--RPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGV 122 (286)
T ss_pred cEEEEeeccc--CceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEE
Confidence 1111111111 1234444444555566666666555554443333
No 74
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.42 E-value=0.00052 Score=67.72 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=51.5
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR 189 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~ 189 (437)
..++++|.|+||||+++.|+++|+++|+||.+.+.++ .++...-.+.+.- ... +...+.|+++|.+...
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~----~~~~~~L~~~L~~l~~ 75 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGL----IFNLETLRADFAALAE 75 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCC----CCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999998 6665444444443 111 1225778877774443
No 75
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.39 E-value=0.0017 Score=50.03 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=47.7
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec-CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTM-GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~-g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
|.|.+.||||+|++|+.++++.|+||......+. .+.+...|.+.-. +.++++.+.+.|.+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence 7899999999999999999999999999888775 3566666766422 23566677777665
No 76
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.35 E-value=0.00029 Score=56.48 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=40.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEE
Q 013722 27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73 (437)
Q Consensus 27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V 73 (437)
...|+|.++||||+.+.++++|+++|.||++-+.+--+|++--.+.|
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV 49 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLV 49 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEE
Confidence 46899999999999999999999999999987777677877655656
No 77
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.21 E-value=0.0031 Score=47.69 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=42.1
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-----CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-----NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-----~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
+.|..+|+||+|++|+.+++.+|+||.+...... .+...-.|.+... +.++++.+.+.|.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~l~ 65 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-------GAEHIEEIIAALR 65 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence 3578899999999999999999999998886653 2334444444431 3455566665554
No 78
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.21 E-value=0.0061 Score=60.20 Aligned_cols=106 Identities=9% Similarity=0.021 Sum_probs=64.3
Q ss_pred eeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEe--cC-CeEEEEEEE-EccCCCCCCcHHHHHHHHHHHHHHHh---
Q 013722 247 YTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVT--GR-MEAYQEYYI-KHVDGFPISSEAERQRVMACLEAAIE--- 319 (437)
Q Consensus 247 ~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t--~~-g~ald~F~V-~~~~g~~~~~~~~~~~l~~~L~~~l~--- 319 (437)
...|+|.||||||+.+.++..|+++|+||.+.+.++ .. .|..-..++ ..+.+ . ..+.|++.|.+.-+
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~--~----~~~~l~~~l~~l~~~l~ 82 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEA--A----SVDTFRQEFQPVAEKFD 82 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCC--C----CHHHHHHHHHHHHHHhC
Confidence 457999999999999999999999999999999974 22 333211111 11222 2 24455555554321
Q ss_pred -----hccCCCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEe
Q 013722 320 -----RRASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEI 358 (437)
Q Consensus 320 -----~~~~~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I 358 (437)
+...+...|-|.+--+.--|.+|-.+...-.++.+-+-+
T Consensus 83 l~~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~v 126 (289)
T PRK13010 83 MQWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGI 126 (289)
T ss_pred CeEEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEE
Confidence 111233455555555555677777777666665444333
No 79
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.21 E-value=0.0017 Score=64.11 Aligned_cols=69 Identities=10% Similarity=0.217 Sum_probs=49.9
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT 190 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g 190 (437)
..+.++|.|+||||++++||++|+++|+||.+....+ .++...-.+.+..| .+. ....|+++|.+....
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~~------~~~~L~~~L~~l~~~ 76 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EGL------DEDALRAGFAPIAAR 76 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CCC------CHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999875 33344444444432 121 247777887764443
No 80
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.15 E-value=0.0039 Score=48.93 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=46.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV 187 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a 187 (437)
..+++...|+||+|++|+++|+..|.||.+..+.- ......-+..+... ++...+++...|.+.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-------~~~~i~qi~kQL~KL 67 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-------TENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-------CHHHHHHHHHHHhCC
Confidence 47899999999999999999999999999998873 33333333333231 355667777777654
No 81
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.15 E-value=0.0027 Score=49.33 Aligned_cols=59 Identities=20% Similarity=0.364 Sum_probs=44.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
.++|.+.||+|+|++|+.++++.|+||.+..+.+. +. -.|.+.- .+.++++.+.++|.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v-----~~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPT-----IEFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEe-----cCHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999775 22 2232321 123566777777766
No 82
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.14 E-value=0.00066 Score=52.28 Aligned_cols=66 Identities=21% Similarity=0.327 Sum_probs=48.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEE--EEEEcCCCCCCC-hHHHHHHHHHHhh
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDT--FFVTDASGNPVD-PKIVDSIQHQIGR 393 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~--F~v~d~~g~~l~-~~~~~~l~~~L~~ 393 (437)
.+|+++..||-++||+|-+|+.+|+.|++|.|... +++-+.+ |.+.+. ++.++ .....++...+..
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~~~~~r~~i~drv~~ 72 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKLGGRQRSKVVDRVTK 72 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-CccccchHHHHHHHHHHHH
Confidence 47999999999999999999999999999999753 6677665 444443 44454 3445555555444
No 83
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.14 E-value=0.0033 Score=47.61 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=37.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT 372 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~ 372 (437)
.+.|..+|+||.|++|+++|.++|+||.+..+.+.+++ -+|.+.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 57889999999999999999999999999998776664 455553
No 84
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.12 E-value=0.015 Score=57.27 Aligned_cols=104 Identities=12% Similarity=0.051 Sum_probs=67.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecC--C-eEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-----
Q 013722 249 AVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGR--M-EAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER----- 320 (437)
Q Consensus 249 ~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~--g-~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~----- 320 (437)
.|+|.||||||+.+.+++.|++.|+||.+.+.+... | |.+ .+.+..++ ... ..+.|++.|++++.+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~m-r~~v~~~~-~~~----~~~~l~~~l~~~~~~~~~l~ 75 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFM-RVEFQLEG-FRL----EESSLLAAFKSALAEKFEMT 75 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEE-EEEEEeCC-CCC----CHHHHHHHHHHHHHHHhCCE
Confidence 589999999999999999999999999999998853 4 332 33344332 122 245566655552211
Q ss_pred ----ccCCCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEe
Q 013722 321 ----RASEGLELELYTDDRFGLLSDITRILREYGLCIRRAEI 358 (437)
Q Consensus 321 ----~~~~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I 358 (437)
...+...|-|-+--+---|.+|-.....-.++.+-+-+
T Consensus 76 i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v 117 (280)
T TIGR00655 76 WELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV 117 (280)
T ss_pred EEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence 11233455555556666777787777776665444333
No 85
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.10 E-value=0.0017 Score=47.37 Aligned_cols=46 Identities=24% Similarity=0.401 Sum_probs=39.6
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-CeEEEEEEEEc
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-RKVKDTFFVTD 373 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-~~a~D~F~v~d 373 (437)
++|...|+||.|.+++..|.++|+||.+..+.+.+ +++.-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999987765 77777777754
No 86
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.07 E-value=0.0046 Score=47.02 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=45.5
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTI 395 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~ 395 (437)
.+.|..+|+||.|+++++.|+++|+||.+....... ....-.|.+.+ +...+++.+.|.+.-
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~~~~~~L~~~G 66 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKT-------QEDRERAKEILKEAG 66 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECC-------HHHHHHHHHHHHHcC
Confidence 578899999999999999999999999988776652 23344565542 124567777776643
No 87
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.07 E-value=0.0044 Score=46.92 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=38.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~ 164 (437)
..++|..+|+||.|++|+.+|+++|+||.+..+...++. .++.+..
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 367889999999999999999999999999998775553 5555544
No 88
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.05 E-value=0.0045 Score=48.07 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=43.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
.+.|.+.||+|+|++|+.+++..|+||.+.++.+. +. -.|.+.- .+.+++..+.+.|+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v-------~~~~~L~~li~~L~ 59 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPT-------IEFEKLQTLMPEIR 59 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEe-------cCHHHHHHHHHHHh
Confidence 47899999999999999999999999999999775 33 2233332 14556666665554
No 89
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.04 E-value=0.0051 Score=47.49 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=46.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEEeCCCCCcCCCHH-HHHHHHHHHh
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKDQSSGCAIEDQK-RLLKIKKLLC 185 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~-~~~~l~~~L~ 185 (437)
.+.|.+.|+||+|++|+.+++++|+||......+. ++.+.-.|.+... +.+ +++.+.+.|+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHh
Confidence 57899999999999999999999999999887553 3556666666542 233 5666666655
No 90
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.003 Score=60.43 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=47.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722 26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSD--GGYLMDVFYVTDINGQKIGDQATISYIKTTVET 96 (437)
Q Consensus 26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 96 (437)
...++++.|||++|+.+.|++.|+++||||.++..+++ .|+++-.-.. ...+.+. ..+.+++++..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f-~~~~~~~----~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEF-EGEGGPL----DREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEE-ecCCCcc----cHHHHHHHHHH
Confidence 46799999999999999999999999999999999972 4655433222 2233332 23556666655
No 91
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.02 E-value=0.0048 Score=50.40 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=47.6
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR 189 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~ 189 (437)
....|++...|+||+|++|++.|+..|.||.+..+.- ......-+..+.. ++..++++...|.+...
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--------~~~~i~Qi~kQL~KLid 74 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--------DDQRLEQMISQIEKLED 74 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--------CchHHHHHHHHHhCCcC
Confidence 4567999999999999999999999999999998864 3322222222222 12466777777775443
No 92
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.01 E-value=0.0064 Score=45.76 Aligned_cols=61 Identities=18% Similarity=0.359 Sum_probs=45.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec-C-CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTM-G-RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~-g-~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
.+.+.+.|+||+|++|+.+|+++|++|.+....+. + +.+.=.|.+.. .+ ++.+.+.+.|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHhC
Confidence 57889999999999999999999999999998775 3 34443444432 13 556677777765
No 93
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.0066 Score=45.83 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=42.9
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-----CeEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-----RKVKDTFFVTDASGNPVDPKIVDSIQHQIGRT 394 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-----~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~ 394 (437)
+.|..+|+||+|++|+++|.++|+||.+....... +.+.-.|.+... +.++.+.+.+.|.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHHc
Confidence 46788999999999999999999999987765432 333333444221 234556777777664
No 94
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.99 E-value=0.0059 Score=46.86 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=45.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
.+.|.+.|+||+|.+|+++|.++|++|.+....+.. +.+.=.|.+ . ..+.++.+++.+.|.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~-~----~~~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT-H----ETSEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE-c----cCCHHHHHHHHHHHHc
Confidence 578999999999999999999999999999876653 444433333 2 2244566666666665
No 95
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.99 E-value=0.0044 Score=56.50 Aligned_cols=66 Identities=12% Similarity=0.272 Sum_probs=48.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT 190 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g 190 (437)
..+.|.+.|+||+|++|+++|+.+|+||.+..+.. ..+...-++.+.. ++...++|.++|.+...-
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLidV 70 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLVNI 70 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHhHh
Confidence 47899999999999999999999999999999975 3333333333322 233367788887765543
No 96
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.95 E-value=0.0069 Score=46.00 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=36.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-c-eeEEEEEEE
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-A-RAAALLHVK 163 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~-~~~d~F~V~ 163 (437)
+.+.+..+|+||.|+++++.|+++|+||.+....... + ...-.+.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 4688899999999999999999999999988876642 2 333344444
No 97
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.93 E-value=0.0029 Score=46.17 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=38.9
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEe
Q 013722 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKD 164 (437)
Q Consensus 119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~ 164 (437)
+.+..+|+||.|++++..|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 35788999999999999999999999999988754 66776776655
No 98
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.92 E-value=0.0052 Score=48.20 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=48.8
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCC--eEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGR--KVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVK 399 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~--~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~ 399 (437)
+.|.+...|+||+|++|+.+|...|.||.+..+.-..+ -..-++.+. | ++...++|..+|.+ +.+|.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~---~---~~~~i~qi~kQL~K-LidV~ 71 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV---C---TENEATLLVSQLKK-LINVL 71 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE---C---CHHHHHHHHHHHhC-CcCEE
Confidence 47899999999999999999999999999988763322 222233332 1 24567888888888 55554
No 99
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.91 E-value=0.0065 Score=47.86 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=45.4
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCC-eEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGR-KVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~-~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
+.+.+..+|+||.|++|...|+++|+||.+-.....++ ...=.|+|. .+|. ...+..+.+-..|.+
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd-~~~~-~~~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFID-FEGH-IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEE-EECC-CCCHHHHHHHHHHHH
Confidence 35778889999999999999999999999987766654 333467774 3344 333333444444444
No 100
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.90 E-value=0.0069 Score=48.26 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=47.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEE-EEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAA-LLHVKDQSSGCAIEDQKRLLKIKKLLCNVL 188 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d-~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL 188 (437)
..+++...|+||.|++|+++|+..|+||.+..+.. ......- ++.+... |+..++++...|.+..
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~-------d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ-------DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC-------CHHHHHHHHHHHhCCc
Confidence 46889999999999999999999999999999875 3333333 3333211 4566677877777543
No 101
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.82 E-value=0.006 Score=49.85 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=51.3
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVK 399 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~ 399 (437)
..+|.+...|+||+|++|+..|+..|.||.+..+.-.+..-.-.+.++-. ++...+++..+|.+ +.+|.
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-----~~~~i~Qi~kQL~K-LidVi 76 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-----DDQRLEQMISQIEK-LEDVL 76 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-----CchHHHHHHHHHhC-CcCEE
Confidence 46899999999999999999999999999998886554433333443321 13577888888888 44444
No 102
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.79 E-value=0.012 Score=44.18 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=44.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-C-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-N-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
.+.+.+.|+||+|++|+.+|+.+|++|.+....+. + +.+.-.|.+..+ + ..++.+.+.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD-------D-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC-------H-HHHHHHHHHHh
Confidence 47788999999999999999999999999998764 3 334444444331 3 45566666665
No 103
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.79 E-value=0.013 Score=45.23 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=47.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec-CCeEEEEEEEEcCCCCCCChH-HHHHHHHHHhh
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTM-GRKVKDTFFVTDASGNPVDPK-IVDSIQHQIGR 393 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~-g~~a~D~F~v~d~~g~~l~~~-~~~~l~~~L~~ 393 (437)
.+.|.+.||||+|++|+++++++|+||......+. ++.+.=.|.+... +.+ ..+.+.++|.+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-----~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-----TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-----chHHHHHHHHHHHhc
Confidence 58899999999999999999999999999877554 3555556766431 123 56777777776
No 104
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.77 E-value=0.0082 Score=53.85 Aligned_cols=66 Identities=21% Similarity=0.415 Sum_probs=50.4
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV 398 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~ 398 (437)
.++.|...|+||.|++|+..|+++|+||.+.-+...+ +...-+|.|. | ++...++|..+|.+ +.+|
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~---~---d~~~i~qi~kQl~K-li~V 69 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV---G---DDKVLEQITKQLNK-LVDV 69 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE---C---CHHHHHHHHHHHhc-CccE
Confidence 4789999999999999999999999999998876654 2333344442 2 34677889999998 4433
No 105
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.76 E-value=0.0078 Score=47.23 Aligned_cols=66 Identities=15% Similarity=0.310 Sum_probs=51.3
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee--cCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEIST--MGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVK 399 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T--~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~ 399 (437)
+.+++...|+||.|++|+.+|...|.||.+-.+.- .++...-++.+. ++...++|..+|.+ +.+|.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-------~~~~i~ql~kQL~K-L~dV~ 71 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-------SERPIDLLSSQLNK-LVDVA 71 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-------CCchHHHHHHHHhc-CcCeE
Confidence 47899999999999999999999999999988875 455566566652 13456778888887 55554
No 106
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.76 E-value=0.0069 Score=48.27 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=47.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
.+.+...|+||+|++|+..|...|.||.+..+...-+.-.-.+.++-..| ++...+++..+|.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~K 67 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhC
Confidence 78899999999999999999999999999988755433333333322111 23566888888888
No 107
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.75 E-value=0.0088 Score=44.77 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=38.0
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEE
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFV 371 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v 371 (437)
+.|.+.|+||+|++|+++|.++|+||.+..+...+ +.+.-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67899999999999999999999999999987764 566556666
No 108
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.73 E-value=0.007 Score=55.18 Aligned_cols=62 Identities=16% Similarity=0.325 Sum_probs=45.8
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee--cCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEIST--MGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T--~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
..+.|.+.|+||+|++|+.+|+++|+||.+..+.+ ..+-. .+.++-+ + ++...++|..+|.+
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~-~---~~~~ieqL~kQL~K 66 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVP-G---DDRTIEQLTKQLYK 66 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEE-C---CHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999966 33334 3434322 1 12236777777777
No 109
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.71 E-value=0.011 Score=45.22 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=43.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC--ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN--ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
.+.+.+.|+||+|++|+.+|+++|+||.+....+.. +.+.-.+.+... +..+++.+.+.|.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~-------~~~~l~~~i~~L~ 64 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET-------SEAALNAALAEIE 64 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC-------CHHHHHHHHHHHH
Confidence 578889999999999999999999999999876532 334333333321 4555555555554
No 110
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.68 E-value=0.014 Score=52.44 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=48.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC--ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN--ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR 189 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~ 189 (437)
..++|...|+||.|++|+++|+.+|+||.+..+...+ +...-++.|.. ++...+++...|.+...
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCcc
Confidence 4688999999999999999999999999999887643 33333444432 35567888888775543
No 111
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.0047 Score=59.15 Aligned_cols=66 Identities=12% Similarity=0.356 Sum_probs=47.5
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeC--CCCCcCCCHHHHHHHHHHHhh
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQ--SSGCAIEDQKRLLKIKKLLCN 186 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~--~~g~~~~~~~~~~~l~~~L~~ 186 (437)
..+++++.|+|+||+.+.|++.|+.+|+||..+.-++. .....|+..-. ..+.+ ...+.|++++..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D--~~~g~FFmR~~f~~~~~~----~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDD--PETGRFFMRVEFEGEGGP----LDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccc--cccCeEEEEEEEecCCCc----ccHHHHHHHHHH
Confidence 56899999999999999999999999999999998852 33344443331 12332 234667777665
No 112
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.57 E-value=0.018 Score=51.89 Aligned_cols=65 Identities=15% Similarity=0.285 Sum_probs=48.6
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC--ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhc
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN--ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLR 189 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~ 189 (437)
..++|...|+||.|++|+++|+.+|+||.+..+.... +...-++.|.. ++..++++...|.+...
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLid 69 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcccc
Confidence 4789999999999999999999999999999876533 33334444432 35567788878775544
No 113
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.54 E-value=0.016 Score=43.48 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=35.0
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEE
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFV 371 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v 371 (437)
+.+.+.|+||.|++|++.|.++|++|.+...... ++.+.-.|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 6789999999999999999999999999887653 3444434444
No 114
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.54 E-value=0.013 Score=52.87 Aligned_cols=67 Identities=18% Similarity=0.393 Sum_probs=50.1
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC--CeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG--RKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVK 399 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g--~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~ 399 (437)
..++|...|+||.|++|+..|+++|+||.+.-+.... +...-+|.+. | ++...+++..+|.+ +.+|.
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~---~---~~~~i~qi~kQl~K-LidV~ 71 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS---G---DEQVIEQITKQLNK-LIDVL 71 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE---C---CHHHHHHHHHHHhc-cccEE
Confidence 4789999999999999999999999999998775543 3333344442 1 34677889999988 44443
No 115
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.54 E-value=0.012 Score=43.82 Aligned_cols=36 Identities=28% Similarity=0.241 Sum_probs=31.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG 362 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g 362 (437)
++.|..+|+||-|++++.+|.++|+||.+......+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 467889999999999999999999999888764443
No 116
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.38 E-value=0.023 Score=44.58 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=45.6
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCcee-EEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722 116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARA-AALLHVKDQSSGCAIEDQKRLLKIKKLLCNV 187 (437)
Q Consensus 116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~-~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a 187 (437)
.+.+++...|+||.|++|+++|+..|.||.+..+.- .++.. .-++.| . + +..++.+.+.|.+.
T Consensus 3 ~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~--~------~~~i~ql~kQL~KL 67 (76)
T PRK11152 3 QHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A--S------ERPIDLLSSQLNKL 67 (76)
T ss_pred eEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C--C------CchHHHHHHHHhcC
Confidence 357899999999999999999999999999999875 33333 333344 2 1 23346677776643
No 117
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.34 E-value=0.017 Score=44.02 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=36.3
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee--cCCeEEEEEEEE
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEIST--MGRKVKDTFFVT 372 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T--~g~~a~D~F~v~ 372 (437)
+-+...|+||.+++|++.|+++|+||.+..... .++.+.=+|.+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 456889999999999999999999999887755 356666566663
No 118
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.33 E-value=0.005 Score=46.59 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=36.6
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT 372 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~ 372 (437)
+-+.+.|+||+|++|+.+|.++|+||.+....+.++.+.-.|.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~ 46 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID 46 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence 456899999999999999999999998887766556666566553
No 119
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.31 E-value=0.028 Score=42.26 Aligned_cols=46 Identities=13% Similarity=0.462 Sum_probs=36.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEE
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVK 163 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~ 163 (437)
++.+.++|+||.|++|+..|++++++|.+....+. ++.+.-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 57889999999999999999999999998887764 33443334443
No 120
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.27 E-value=0.032 Score=41.38 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=29.2
Q ss_pred EEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 250 VTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVT 282 (437)
Q Consensus 250 V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t 282 (437)
+.|..+|+||.+++++..|.++|+||.+.....
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~ 34 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFV 34 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEc
Confidence 578899999999999999999999998776544
No 121
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.26 E-value=0.013 Score=43.79 Aligned_cols=44 Identities=18% Similarity=0.372 Sum_probs=37.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC--ceeEEEEEE
Q 013722 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN--ARAAALLHV 162 (437)
Q Consensus 119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~--~~~~d~F~V 162 (437)
+.|.+.|+||++++|+.+|+++|+||.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 57889999999999999999999999999988743 556566666
No 122
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.25 E-value=0.049 Score=42.81 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=39.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEEe
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKD 164 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~~ 164 (437)
+.+.+..+|+||.|++|...|+++|+||.+...... .+...-.|+|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 456777899999999999999999999999987764 334556777766
No 123
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.19 E-value=0.049 Score=39.70 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=42.7
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
+.+.+.|+||.+.+|+..|.+++++|.+..+...+ +...-.|.+..+ +...+..+.+.|.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~ 61 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-------DLEHLARIMRKLR 61 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 46778999999999999999999999999887654 334444445442 2444555555544
No 124
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.17 E-value=0.039 Score=42.36 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=30.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec
Q 013722 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH 152 (437)
Q Consensus 119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~ 152 (437)
+++..+|+||-|++++..|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5778899999999999999999999998876553
No 125
>PRK08577 hypothetical protein; Provisional
Probab=96.17 E-value=0.055 Score=47.27 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=41.8
Q ss_pred CCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec--CceeEEEEEEEe
Q 013722 112 PSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH--NARAAALLHVKD 164 (437)
Q Consensus 112 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~--~~~~~d~F~V~~ 164 (437)
+....+.+.|.+.|+||+|++|+.+|+++++||.+....+. ++.+.-.|.+.-
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev 106 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDL 106 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEe
Confidence 44458899999999999999999999999999999988763 343444444443
No 126
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.09 E-value=0.053 Score=40.75 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=31.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTM 361 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~ 361 (437)
.+.+...|+||.|++|++.|.+++++|.+....+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 57889999999999999999999999998887665
No 127
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.06 E-value=0.037 Score=42.49 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=42.4
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEE-EEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKD-TFFVTDASGNPVDPKIVDSIQHQIGRT 394 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D-~F~v~d~~g~~l~~~~~~~l~~~L~~~ 394 (437)
+.+..+|+||-|++++..|+++|+||.+...... +..... .+.|.. +. +...++|.+.|.+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~---e~--~~~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTP---MD--RSKENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEE---ec--chHHHHHHHHHhCc
Confidence 6788999999999999999999999998866544 222222 233321 11 22366777777664
No 128
>PRK04435 hypothetical protein; Provisional
Probab=96.00 E-value=0.068 Score=47.44 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=51.3
Q ss_pred cCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEeCCCCCcCCCH-HHHHHHHHHHh
Q 013722 111 VPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQ-KRLLKIKKLLC 185 (437)
Q Consensus 111 ~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~-~~~~~l~~~L~ 185 (437)
........+.+...|+||+|++|..+++.+|+||....... .++.+.-.|.+... +. .+++.|-+.|+
T Consensus 64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs-------~~~~~L~~Li~~L~ 133 (147)
T PRK04435 64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS-------SMEGDIDELLEKLR 133 (147)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC-------ChHHHHHHHHHHHH
Confidence 34557788999999999999999999999999999988765 35666667776652 22 25566665554
No 129
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.00 E-value=0.042 Score=41.83 Aligned_cols=65 Identities=23% Similarity=0.283 Sum_probs=44.1
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV 398 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~ 398 (437)
+.+.+..+|+||.|..+++.|.++|+||.+....-. ++...=+|.+... + .+.+.+.|.+.-+.|
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~-----~---~~~~~~~L~~~G~~v 68 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM-----N---PRPIIEDLRRAGYEV 68 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC-----C---HHHHHHHHHHCCCee
Confidence 478899999999999999999999999998765332 2344444554311 1 125666666654443
No 130
>PRK07431 aspartate kinase; Provisional
Probab=96.00 E-value=3.1 Score=45.31 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=73.8
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccC--
Q 013722 25 EHATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNAS-- 99 (437)
Q Consensus 25 ~~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~-- 99 (437)
.+...|+|.+. +.+|+.+++..+|++.|++|.... + .+..+ .|.|...+. ++..+.|.+.+.....
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~I-s~vv~~~d~-----~~av~~Lh~~f~~~~~~~ 416 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVKV-SCVIDAEDG-----DKALRAVCEAFELEDSQI 416 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCEE-EEEEcHHHH-----HHHHHHHHHHhccCCccc
Confidence 35678888886 799999999999999999997444 2 33222 255532211 2345556565533211
Q ss_pred --cccCcc---eeee-ecCCCceEEEEEE-eCCCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722 100 --FLNSMR---SSVG-VVPSKEYTSIELT-GTDRPGLLSEVSAVLTDLSCSVVSAEIW 150 (437)
Q Consensus 100 --~~~~~~---r~v~-~~~~~~~t~i~v~-~~DrpGLL~~I~~~l~~~g~~I~~A~i~ 150 (437)
.|..+. ..|. .....+...|++. .++.+|+++++...|+++|++|......
T Consensus 417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~ 474 (587)
T PRK07431 417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQS 474 (587)
T ss_pred ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence 011111 0111 1333455566665 4788999999999999999999887543
No 131
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.92 E-value=0.054 Score=40.50 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=35.1
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-e-CCEEEEEEEE
Q 013722 30 IQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-D-GGYLMDVFYV 73 (437)
Q Consensus 30 I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~-~g~~~d~F~V 73 (437)
+.+.++|+||.+++++.+|+++|++|....... . ++...-.|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 578999999999999999999999999888765 2 4555433444
No 132
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.91 E-value=0.066 Score=38.96 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=44.1
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
|.|...|+||.+.+|+..|.+++++|....+...+ +.+.-.|.+... +....+.+.+.|..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 62 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ 62 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 46788999999999999999999999999987765 333334444321 23455666666654
No 133
>PRK08577 hypothetical protein; Provisional
Probab=95.90 E-value=0.072 Score=46.54 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=53.9
Q ss_pred CEEEEeeCCC--CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeCCCCCCCcHHHHHHH
Q 013722 15 PRVVIDNDVC--EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSD--GGYLMDVFYVTDINGQKIGDQATISYI 90 (437)
Q Consensus 15 ~~V~v~~~~~--~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l 90 (437)
-.|.+.+... +..+.+.|.+.|+||+|++++.+|+++|.||.+....+. ++.+.-.|.+.-.+.. ..++.+
T Consensus 42 ~~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~-----~~l~~l 116 (136)
T PRK08577 42 KEIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSD-----IDLEEL 116 (136)
T ss_pred CEEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCch-----hhHHHH
Confidence 3555555433 347899999999999999999999999999998887663 4555444555322221 234566
Q ss_pred HHHHhhc
Q 013722 91 KTTVETN 97 (437)
Q Consensus 91 ~~~L~~~ 97 (437)
.+.|...
T Consensus 117 ~~~L~~l 123 (136)
T PRK08577 117 EEELKKL 123 (136)
T ss_pred HHHHHcC
Confidence 6666554
No 134
>PRK04435 hypothetical protein; Provisional
Probab=95.82 E-value=0.085 Score=46.82 Aligned_cols=75 Identities=13% Similarity=0.062 Sum_probs=55.4
Q ss_pred EEeeCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722 18 VIDNDVCEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYIKTTVET 96 (437)
Q Consensus 18 ~v~~~~~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 96 (437)
-+.....+....+.+.++|+||+|++|+.+|+++|+||..-.... .+|.+.-.|.|...+. ...++.|.+.|..
T Consensus 60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~ 134 (147)
T PRK04435 60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLRN 134 (147)
T ss_pred CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHc
Confidence 344445567789999999999999999999999999999887765 4576665677743211 1256677777766
Q ss_pred c
Q 013722 97 N 97 (437)
Q Consensus 97 ~ 97 (437)
.
T Consensus 135 i 135 (147)
T PRK04435 135 L 135 (147)
T ss_pred C
Confidence 4
No 135
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.74 E-value=0.096 Score=39.82 Aligned_cols=47 Identities=26% Similarity=0.526 Sum_probs=36.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec--CceeEEEEEEE
Q 013722 117 TSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH--NARAAALLHVK 163 (437)
Q Consensus 117 t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~--~~~~~d~F~V~ 163 (437)
+.+.+..+|+||.|.+++.+|+++|+||.+....-. ++...-.|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 468889999999999999999999999998875432 33444455554
No 136
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.72 E-value=0.05 Score=41.04 Aligned_cols=58 Identities=19% Similarity=0.380 Sum_probs=42.2
Q ss_pred CCcchHHHHHHHHHHcCCeEEEEEeee--cCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722 334 DRFGLLSDITRILREYGLCIRRAEIST--MGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV 398 (437)
Q Consensus 334 DrpGLL~~I~~~l~~~~i~I~~A~I~T--~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~ 398 (437)
|+||.|.+|+.+|...|.||.+..+.. .++.+.=++.+.. . +...+.|.++|.+ +.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~---~---~~~i~~l~~Ql~K-lidV 60 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG---D---DREIEQLVKQLEK-LIDV 60 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHC-STTE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee---C---chhHHHHHHHHhc-cCCe
Confidence 789999999999999999999999987 3455554554432 1 2356778888887 5554
No 137
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.67 E-value=0.013 Score=44.30 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=36.0
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEE
Q 013722 30 IQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYV 73 (437)
Q Consensus 30 I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V 73 (437)
+.+.+.|+||++++++.+|++.|+||......+.+|.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 67899999999999999999999999877665555766555544
No 138
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.64 E-value=0.099 Score=36.01 Aligned_cols=35 Identities=37% Similarity=0.629 Sum_probs=31.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC
Q 013722 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN 153 (437)
Q Consensus 119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~ 153 (437)
|.+.++|+||.+++|+.+|+++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788999999999999999999999999987643
No 139
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.64 E-value=0.049 Score=41.09 Aligned_cols=56 Identities=14% Similarity=0.301 Sum_probs=38.9
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722 125 DRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL 188 (437)
Q Consensus 125 DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL 188 (437)
|+||.|.+|+++|...|.||.+..+.. .++...-++.+.. . +...+.|...|.+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~------~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--D------DREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--C------chhHHHHHHHHhccC
Confidence 789999999999999999999999987 3344444444443 1 224466777776543
No 140
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.58 E-value=0.075 Score=36.64 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=31.6
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMG 362 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g 362 (437)
|.+.+.|+||++++|..+|.++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46888999999999999999999999999987654
No 141
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.39 E-value=0.037 Score=42.11 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=36.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEe
Q 013722 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKD 164 (437)
Q Consensus 119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~ 164 (437)
+.+..+|+||.+++|+.+|+++|+||.+..... .++.+.-+|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 456899999999999999999999999888765 3455655555543
No 142
>PRK07334 threonine dehydratase; Provisional
Probab=95.31 E-value=0.12 Score=53.52 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=51.2
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-----CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722 114 KEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-----NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN 186 (437)
Q Consensus 114 ~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-----~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (437)
.....|.|.+.||||+|++|+.+|++.++||.+....+. ++.+.-.|.|.-. +.++++.+.+.|+.
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-------d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-------DAAHLQEVIAALRA 394 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999998764 3455555555442 46677777777764
No 143
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.23 E-value=0.14 Score=39.56 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=42.4
Q ss_pred EEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 329 ELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 329 ev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
-+..+|+||-|++|..+|+++|+||.+-.-.... ....=.|||. .+|.. .+...+.+-+.|.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~~-~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGHI-DDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECCC-CCHHHHHHHHHHHH
Confidence 3455799999999999999999999988665543 3455577774 34532 22334444455544
No 144
>PRK11899 prephenate dehydratase; Provisional
Probab=95.18 E-value=0.07 Score=52.47 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=43.7
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCC
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVD 380 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~ 380 (437)
|.|-+..+|+||.||++-.+|+++|||+.+-.-...+.+-++ .||| |.+|..-+
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d 249 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPED 249 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCC
Confidence 566666789999999999999999999999888877666555 7888 56676533
No 145
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.10 E-value=0.12 Score=40.02 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=37.3
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEE-EEEEEEcCCC
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVK-DTFFVTDASG 376 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~-D~F~v~d~~g 376 (437)
|-+...|+||-|+++-..|+++|||+.+-.-.....+-. =.||| |-+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence 445568999999999999999999999887776654433 47777 4456
No 146
>PRK07334 threonine dehydratase; Provisional
Probab=95.10 E-value=0.37 Score=49.93 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=51.0
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec-----CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM-----GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTI 395 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~-----g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~ 395 (437)
.+.|+|.+.||||+|++|+.+|.+.++||.+....+. ++.+.-.|.|.-. +.++++.+.+.|.+.-
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-----d~~~L~~vi~~Lr~~g 396 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-----DAAHLQEVIAALRAAG 396 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-----CHHHHHHHHHHHHHcC
Confidence 3789999999999999999999999999999998765 3455545555321 2357788888887753
No 147
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.88 E-value=0.88 Score=46.96 Aligned_cols=106 Identities=14% Similarity=0.252 Sum_probs=66.9
Q ss_pred CeEEEEEE---eCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCccc
Q 013722 26 HATVIQVD---SVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLN 102 (437)
Q Consensus 26 ~~~~I~V~---~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 102 (437)
+...|+|. .++++|.++++...|.+.|++|..-... ..+.. -.|.|...+. +...+.|.+.+....
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s~~~-Is~~V~~~d~-----~~a~~~L~~~~~~~~---- 327 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PSETS-ISLTVDETDA-----DEAVRALKDQSGAAG---- 327 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CCCce-EEEEEeHHHH-----HHHHHHHHHHHHhcC----
Confidence 45678887 6789999999999999999999743322 12211 2355621110 122233333221110
Q ss_pred CcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEE
Q 013722 103 SMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVS 146 (437)
Q Consensus 103 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~ 146 (437)
...+ ....+...|+|.+. ++||+++++..+|++.|+||..
T Consensus 328 --~~~i--~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 328 --LDRV--EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred --CceE--EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 0111 22336778888885 7899999999999999999985
No 148
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.75 E-value=0.16 Score=41.15 Aligned_cols=51 Identities=16% Similarity=0.342 Sum_probs=40.8
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCC
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGN 377 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~ 377 (437)
+.|-+..+|+||-|+++-..|+++|||+.+-.-.....+-++ .||| |.+|.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~ 66 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK 66 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC
Confidence 466677799999999999999999999999888776555444 7777 45565
No 149
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.63 E-value=0.33 Score=37.39 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=44.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN 186 (437)
Q Consensus 119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (437)
+.+..+|+||-|+++..+|+.+|+||.+.+..... ....-.|+|.-. |.. ++...+.+-+.|.+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~--~~~--~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE--GHI--DDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE--CCC--CCHHHHHHHHHHHH
Confidence 34556899999999999999999999999776533 356667777762 431 23344544445443
No 150
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.62 E-value=0.077 Score=41.08 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=50.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT 190 (437)
Q Consensus 119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g 190 (437)
+++.+.-||-.++++|-+|..+|+-|.+|+|.. .+++...+|.+--...+..+.....-..+.+.+...|.|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~lmg 76 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTLMG 76 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHHhc
Confidence 688899999999999999999999999999975 455666665433211233343343446666666665543
No 151
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.49 E-value=0.021 Score=45.65 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=43.7
Q ss_pred EEEEEeCC-CcchHHHHHHHHHhCCCeEEEEEEEe---------cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722 118 SIELTGTD-RPGLLSEVSAVLTDLSCSVVSAEIWT---------HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV 187 (437)
Q Consensus 118 ~i~v~~~D-rpGLL~~I~~~l~~~g~~I~~A~i~T---------~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a 187 (437)
.|+|.|.| ++|++++|+++|+++|+||.+.+--+ ......-.|.|+.+ +. +. +.++++|.+.
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~~-~~---~~lr~~L~~l 72 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----PA-DL---EALRAALLEL 72 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----CC-CH---HHHHHHHHHH
Confidence 37899999 99999999999999999997655422 11244556777653 22 33 6677777743
No 152
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.43 E-value=2.1 Score=44.17 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=66.6
Q ss_pred CCeeEEEEE---eCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-
Q 013722 245 RDYTAVTIR---SKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER- 320 (437)
Q Consensus 245 ~~~t~V~V~---~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~- 320 (437)
.+...|.|. .++++|.++++..+|.+.++||........ ... -+|.|... ..++..+.|.+.+..
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s-~~~-Is~~V~~~---------d~~~a~~~L~~~~~~~ 326 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPS-ETS-ISLTVDET---------DADEAVRALKDQSGAA 326 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCC-Cce-EEEEEeHH---------HHHHHHHHHHHHHHhc
Confidence 455678887 678899999999999999999975533211 111 24555332 233334444443311
Q ss_pred c-----c-CCCcEEEEEeC---CCcchHHHHHHHHHHcCCeEEE
Q 013722 321 R-----A-SEGLELELYTD---DRFGLLSDITRILREYGLCIRR 355 (437)
Q Consensus 321 ~-----~-~~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I~~ 355 (437)
. . ..-.+|.|.+. ++||+++++.++|.+.||||.+
T Consensus 327 ~~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 327 GLDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CCceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 1 1 12356677774 7899999999999999999985
No 153
>PRK06635 aspartate kinase; Reviewed
Probab=94.32 E-value=1.3 Score=45.75 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=67.9
Q ss_pred eEEEEEE-eCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCc
Q 013722 27 ATVIQVD-SVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSM 104 (437)
Q Consensus 27 ~~~I~V~-~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~ 104 (437)
...|+|. ..++||.++++..+|++.|+||..-..+. .+|..--.|.|... ..+...+.|.+.... ..
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~---------~~~~a~~~L~~~~~~-~~- 330 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD---------DLEKALELLEEVKDE-IG- 330 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH---------HHHHHHHHHHHHHHH-cC-
Confidence 3445544 57799999999999999999999654432 22344434666321 112223333321000 00
Q ss_pred ceeeeecCCCceEEEEEEe---CCCcchHHHHHHHHHhCCCeEEEEE
Q 013722 105 RSSVGVVPSKEYTSIELTG---TDRPGLLSEVSAVLTDLSCSVVSAE 148 (437)
Q Consensus 105 ~r~v~~~~~~~~t~i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~ 148 (437)
.+.+ ....+...++|.+ +++||.+++|..+|+++|+||....
T Consensus 331 ~~~i--~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 331 AESV--TYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred cceE--EEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 0111 2233567788876 6899999999999999999998753
No 154
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=94.12 E-value=0.25 Score=46.49 Aligned_cols=58 Identities=21% Similarity=0.356 Sum_probs=45.8
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEEEcCCCCCCChHHHHH
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDASGNPVDPKIVDS 386 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v~d~~g~~l~~~~~~~ 386 (437)
++.+-+.-.||||.+..|+..|.++||||-...+... |++|.-+..|. ++++++.+++
T Consensus 148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD----~~v~~~vl~~ 207 (208)
T TIGR00719 148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID----KNIDDHIKDA 207 (208)
T ss_pred ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC----CCCCHHHHhh
Confidence 4478888899999999999999999999999999764 67777666663 3566554443
No 155
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.10 E-value=0.29 Score=54.31 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=50.8
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec--CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH--NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
....|.|.+.||+|||++|+.+++..++||.++.+.+. ++.+...|.|.-. +..++.++-..|+
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-------~~~~L~~l~~~L~ 730 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-------NLQVLGRVLGKLN 730 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 44578999999999999999999999999999998774 4666666666542 4567777776665
No 156
>PRK06291 aspartate kinase; Provisional
Probab=94.06 E-value=1.8 Score=45.85 Aligned_cols=109 Identities=10% Similarity=0.193 Sum_probs=70.5
Q ss_pred CeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCccc
Q 013722 26 HATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLN 102 (437)
Q Consensus 26 ~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 102 (437)
+...|+|.+. +.+|+++++..+|+++|++|..-...+..-.+ .|.|...+- +...+.|.+.+.....
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~~d~-----~~av~~L~~~~~~~~~--- 389 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDEADL-----EKALKALRREFGEGLV--- 389 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeHHHH-----HHHHHHHHHHHHHhcC---
Confidence 4567888764 68999999999999999999865443322212 355532110 1233444444433110
Q ss_pred CcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEEE
Q 013722 103 SMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAEI 149 (437)
Q Consensus 103 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~i 149 (437)
..+ .-..+...|.|.|. +++|+++++..+|+..|+||.....
T Consensus 390 ---~~i--~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq 434 (465)
T PRK06291 390 ---RDV--TFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ 434 (465)
T ss_pred ---cce--EEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence 111 12235677888885 7899999999999999999985543
No 157
>PRK08210 aspartate kinase I; Reviewed
Probab=93.73 E-value=2.6 Score=43.59 Aligned_cols=99 Identities=17% Similarity=0.280 Sum_probs=67.2
Q ss_pred CeEEEEEEeCCC-ccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCc
Q 013722 26 HATVIQVDSVNR-HGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSM 104 (437)
Q Consensus 26 ~~~~I~V~~~Dr-pGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~ 104 (437)
+...|+|...+. +|.++++...|+++|+||..-..+.. . -.|.+.. +..+.+++.|.+.. .
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~--~--is~~v~~---------~~~~~a~~~l~~~~-~---- 331 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT--E--VVFTVSD---------EDSEKAKEILENLG-L---- 331 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc--e--EEEEEcH---------HHHHHHHHHHHHhC-C----
Confidence 556777776665 99999999999999999997644321 1 2355531 12233444454421 0
Q ss_pred ceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEE
Q 013722 105 RSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVS 146 (437)
Q Consensus 105 ~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~ 146 (437)
.+ ....+...|.|.+. ++||+++++..+|++.|+||..
T Consensus 332 --~v--~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 332 --KP--SVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred --cE--EEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 11 12235677888874 8899999999999999999974
No 158
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.70 E-value=0.38 Score=37.49 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=38.4
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCe-EEEEEEEEcCCCCC
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRK-VKDTFFVTDASGNP 378 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~-a~D~F~v~d~~g~~ 378 (437)
+-+..+|+||-|+++-..|+++|||+.+-.-...... -+=.||| |.+|..
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence 4455689999999999999999999998888776444 4447777 445544
No 159
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.34 E-value=1.1 Score=36.37 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=48.4
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhh
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVL 188 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL 188 (437)
..+.+.+..+|+||-|+++-..|+.+|+|+.+....... ....=.|||.- .|. . + ..++.+-+.|.+.+
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~-~-~-~~~~~~l~~L~~~~ 82 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK-S-A-PALDPIIKSLRNDI 82 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC-C-C-HHHHHHHHHHHHHh
Confidence 446777777999999999999999999999999887643 34455777776 244 2 2 34444444544433
No 160
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.30 E-value=0.47 Score=52.59 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=49.9
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
-...|.|.+.||+|+|++|+.+++..++||.++.+.+.+ +.+...|.|.-. +..++..+-..|+
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~i~~~Lr 689 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-------DRVHLANIMRKIR 689 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 455789999999999999999999999999999987754 455555665542 4566777766655
No 161
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.26 E-value=0.18 Score=40.25 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=41.1
Q ss_pred EEEEEeCC-CcchHHHHHHHHHHcCCeEEEEEe-----eecC----CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 327 ELELYTDD-RFGLLSDITRILREYGLCIRRAEI-----STMG----RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 327 ~iev~~~D-rpGLL~~I~~~l~~~~i~I~~A~I-----~T~g----~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
+|+|.+.| ++|.+++|+++|+++|+||..-+= ...+ .+..-.|.|+. .+. ..+.++++|.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~---~~~---~~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRG---QPA---DLEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeC---CCC---CHHHHHHHHHH
Confidence 47899999 999999999999999999964221 1112 35566787863 332 23455555543
No 162
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.21 E-value=0.43 Score=52.98 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=49.8
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
...|.|.+.||+|||++|+.++++.++||.+..+.+. ++.+.-.|.|.-. +-+.+..|-+.|.+
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-----~~~~L~~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-----NLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence 3589999999999999999999999999999999875 3556666666421 12566777777765
No 163
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=93.19 E-value=0.36 Score=43.27 Aligned_cols=47 Identities=11% Similarity=0.430 Sum_probs=38.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC--ceeEEEEEEEe
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN--ARAAALLHVKD 164 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~--~~~~d~F~V~~ 164 (437)
-+.+.+.++||.|.+++++++++|.||..|+.+..+ ..+.-.|.+.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg 52 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG 52 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence 478889999999999999999999999999998733 34554555544
No 164
>PRK06635 aspartate kinase; Reviewed
Probab=93.09 E-value=1 Score=46.47 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=66.9
Q ss_pred eeEEEEE-eCCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH---Hhh-
Q 013722 247 YTAVTIR-SKDRPKLLFDTVCCLTDMQYVVYHGTVVTGR-MEAYQEYYIKHVDGFPISSEAERQRVMACLEAA---IER- 320 (437)
Q Consensus 247 ~t~V~V~-~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~-g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~---l~~- 320 (437)
...|++. ..++||.++++..+|.+.|+||......... |+.--+|.|... ..+...+.|++. +.-
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~---------~~~~a~~~L~~~~~~~~~~ 332 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD---------DLEKALELLEEVKDEIGAE 332 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH---------HHHHHHHHHHHHHHHcCcc
Confidence 3444444 5778999999999999999999976443322 345456666432 222333334431 110
Q ss_pred cc---CCCcEEEEEe---CCCcchHHHHHHHHHHcCCeEEEE
Q 013722 321 RA---SEGLELELYT---DDRFGLLSDITRILREYGLCIRRA 356 (437)
Q Consensus 321 ~~---~~~~~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A 356 (437)
.. ..-..++|.+ .++||.+++|.++|+++||||...
T Consensus 333 ~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 333 SVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred eEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 01 1235688866 689999999999999999999884
No 165
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.76 E-value=0.83 Score=34.58 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=40.4
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN 186 (437)
Q Consensus 119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (437)
+.|.-+||||=|.+++.+++. |.||...+-...+ +.+.-.+.+..+ ++++.+.+.+.|.+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~-------~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP-------DREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 357789999999999999999 9999987655433 222222233331 35566777776654
No 166
>PRK09034 aspartate kinase; Reviewed
Probab=92.70 E-value=2.9 Score=44.11 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=69.3
Q ss_pred CeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCccc
Q 013722 26 HATVIQVDS---VNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLN 102 (437)
Q Consensus 26 ~~~~I~V~~---~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 102 (437)
+.+.|++.. ++++|+++++...|+++|++|.-- +.+.. --.|.|...+ ... ..+..+...|......
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~~-sis~~v~~~~---~~~-a~~~~l~~el~~~~~~-- 376 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGID-DLSIIIRERQ---LTP-KKEDEILAEIKQELNP-- 376 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCCc-EEEEEEeHHH---hhH-HHHHHHHHHHHHhhCC--
Confidence 456677764 678999999999999999999864 22222 2246664321 110 0112333333322110
Q ss_pred CcceeeeecCCCceEEEEEEe---CCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 103 SMRSSVGVVPSKEYTSIELTG---TDRPGLLSEVSAVLTDLSCSVVSAEIWT 151 (437)
Q Consensus 103 ~~~r~v~~~~~~~~t~i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~i~T 151 (437)
..+ ....+...|++.+ .++||+++++..+|+.+|+||......+
T Consensus 377 ---~~I--~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 377 ---DEL--EIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred ---ceE--EEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 011 2233577888866 3789999999999999999998775433
No 167
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.63 E-value=0.66 Score=51.40 Aligned_cols=64 Identities=25% Similarity=0.317 Sum_probs=49.9
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
-.+.|.|.+.||+|+|++|+.+++.+++||.+..+.+. ++.+.-.|.|.-. +-.++..+-..|.
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~ii~~L~ 673 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-------NYKHLLKIMLKIK 673 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 45679999999999999999999999999999999875 3555555555542 4566777766665
No 168
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=92.55 E-value=0.54 Score=44.18 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=42.0
Q ss_pred CCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEe
Q 013722 112 PSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKD 164 (437)
Q Consensus 112 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~ 164 (437)
-.+....+-+.-.|+||.+..|+.+|.++++||...++.. .++.+.-+..+..
T Consensus 144 ~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~ 198 (208)
T TIGR00719 144 FRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK 198 (208)
T ss_pred ecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence 3345667778889999999999999999999999999987 3455655555543
No 169
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.33 E-value=0.82 Score=34.63 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=44.8
Q ss_pred EEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722 328 LELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV 398 (437)
Q Consensus 328 iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~ 398 (437)
+.|.-+||||=|.++++++.+ |.||....-...+.....++...... +++..+++.++|.+.-..+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~----~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP----DREDLAELKERLEALGYPY 66 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC----CHHHHHHHHHHHHHcCCCc
Confidence 357789999999999999999 99998766655443233334332211 2467788888888754443
No 170
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.07 E-value=0.72 Score=51.13 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=49.4
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
...|.|.+.||+|+|++|+.++.+.++||.++.+.+.. ..+.-.|.|.-. +-+++..|-+.|..
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-----DRVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 35899999999999999999999999999999988765 455555555321 12566777777765
No 171
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=92.01 E-value=0.56 Score=45.92 Aligned_cols=55 Identities=18% Similarity=0.322 Sum_probs=45.8
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCC
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVD 380 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~ 380 (437)
.|.|-+..+|+||-|+++-.+|+.+|||+.+-.-.-.+..-++ .||| |-.|..-+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~ 249 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDD 249 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCc
Confidence 5678888889999999999999999999999988888777777 6666 66676644
No 172
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=91.94 E-value=1.2 Score=34.48 Aligned_cols=47 Identities=11% Similarity=0.141 Sum_probs=37.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEe
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKD 164 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~ 164 (437)
.+.+..+|+||-|+++-..|+.+|+|+...+..... ....=.|+|.-
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 345556899999999999999999999999887643 34556677776
No 173
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.92 E-value=0.31 Score=50.58 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=49.1
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHH
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQ 388 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~ 388 (437)
.+.|-+.-.|+||.++.|+.+|+++|+||..-+..+.|+.|.-+|.+. + ++.++.+++|+
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D---~-~~~~~~~~~i~ 397 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVD---A-DYAEEALDALK 397 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeC---C-CCcHHHHHHHH
Confidence 478888999999999999999999999999999999998887777663 2 44544555554
No 174
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.73 E-value=0.7 Score=39.26 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=41.1
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCC
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNP 378 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~ 378 (437)
+.|-+..+|+||-|++|-..|+.+|||+.+-.-...+..-++ .||| |.+|..
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~ 94 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR 94 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence 466666699999999999999999999999888877665554 6777 445543
No 175
>PLN02551 aspartokinase
Probab=91.67 E-value=8.1 Score=41.51 Aligned_cols=113 Identities=17% Similarity=0.151 Sum_probs=68.8
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHH-HHHHHHhhccCc
Q 013722 25 EHATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATIS-YIKTTVETNASF 100 (437)
Q Consensus 25 ~~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~-~l~~~L~~~~~~ 100 (437)
.+.+.|+|.+. +.+|.++++...|+++|++|.-- .+. .. --.|.|...+-. ..+.++ .+++.+.+...
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssS-e~-sIs~~v~~~~~~---~~~~i~~~l~~l~~el~~- 435 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS-EV-SISLTLDPSKLW---SRELIQQELDHLVEELEK- 435 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ecc-CC-EEEEEEehhHhh---hhhhHHHHHHHHHHHhhc-
Confidence 35577788655 68999999999999999999855 232 21 123666332211 111111 12121112110
Q ss_pred ccCcceeeeecCCCceEEEEEEeC--CCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 101 LNSMRSSVGVVPSKEYTSIELTGT--DRPGLLSEVSAVLTDLSCSVVSAEIWT 151 (437)
Q Consensus 101 ~~~~~r~v~~~~~~~~t~i~v~~~--DrpGLL~~I~~~l~~~g~~I~~A~i~T 151 (437)
. ..+ .-..+...|+|+|. .+||+++++..+|+..|+||......+
T Consensus 436 ---~-~~V--~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga 482 (521)
T PLN02551 436 ---I-AVV--NLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA 482 (521)
T ss_pred ---C-CeE--EEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence 0 011 22345777888864 689999999999999999998766443
No 176
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=91.65 E-value=6.2 Score=44.79 Aligned_cols=116 Identities=13% Similarity=0.170 Sum_probs=73.0
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc
Q 013722 25 EHATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL 101 (437)
Q Consensus 25 ~~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~ 101 (437)
++...|+|.+. ++||+++++...|+++|++|......+ +..- -.|.|...+. +...+.|.+.+......
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~s-Isf~V~~~d~-----~~av~~L~~~f~~el~~- 384 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYS-ISFCVPQSDA-----AKAKRALEEEFALELKE- 384 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCce-EEEEEeHHHH-----HHHHHHHHHHHHHHhcc-
Confidence 45678888754 689999999999999999997554433 2221 2366632111 12333444444221110
Q ss_pred cCcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 102 NSMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAEIWT 151 (437)
Q Consensus 102 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~i~T 151 (437)
.....+ ....+...|+|.|. ++||+++++..+|++.|+||....-.+
T Consensus 385 -~~~~~i--~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqgs 434 (819)
T PRK09436 385 -GLLEPL--EVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGS 434 (819)
T ss_pred -CCcceE--EEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEecc
Confidence 000111 22346778888886 789999999999999999998765433
No 177
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.55 E-value=0.76 Score=34.67 Aligned_cols=46 Identities=17% Similarity=0.434 Sum_probs=36.2
Q ss_pred CceEEEEEEeC----CCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722 114 KEYTSIELTGT----DRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164 (437)
Q Consensus 114 ~~~t~i~v~~~----DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~ 164 (437)
.+...|+|.++ |.||++++++..|++.|++|.... | ...+.+.|..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~ 53 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE 53 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence 35677888887 799999999999999999998777 4 4466666665
No 178
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.21 E-value=0.79 Score=34.59 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=31.2
Q ss_pred EEEEEeC----CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722 327 ELELYTD----DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT 372 (437)
Q Consensus 327 ~iev~~~----DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~ 372 (437)
.|.|.++ |.||+++++..+|++.||+|.... |+ -.|.|.|.
T Consensus 8 ~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~ 52 (65)
T PF13840_consen 8 KISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVK 52 (65)
T ss_dssp EEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEE
T ss_pred EEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEe
Confidence 5666666 799999999999999999998766 33 34566664
No 179
>PRK06382 threonine dehydratase; Provisional
Probab=91.08 E-value=1.3 Score=45.89 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=48.5
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE----e-cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW----T-HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN 186 (437)
Q Consensus 113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~----T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (437)
....+.++|.-+|+||-|++|+.+|.++|+||.+.... . ..+...-+|.|... +++..+.+.+.|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 44677899999999999999999999999999887764 1 23445556666552 34444566666553
No 180
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=90.97 E-value=1.1 Score=49.65 Aligned_cols=64 Identities=25% Similarity=0.228 Sum_probs=48.4
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-CeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-RKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
.+.|.|.+.||+|+|++|+.++++.++||.+..+.+.. +.+.-.|.|.-. +-..+..|-+.|..
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-----NYKHLLKIMLKIKT 674 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 45899999999999999999999999999999998874 444444555321 12466666666665
No 181
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.79 E-value=2 Score=34.17 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=38.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEeCCCCCcCCC-HHHHHHHHHHHhh
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIED-QKRLLKIKKLLCN 186 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~-~~~~~~l~~~L~~ 186 (437)
++.|.-+|+||=|++++.+|+ +.||....-.. ..+.+.-.+.+..+ + ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-------~~~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-------NGAEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-------CcHHHHHHHHHHHHH
Confidence 577888999999999999999 55665433332 22444444445542 3 4566666666654
No 182
>PRK08210 aspartate kinase I; Reviewed
Probab=90.68 E-value=9 Score=39.60 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=64.1
Q ss_pred CCeeEEEEEeCCC-CchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--c
Q 013722 245 RDYTAVTIRSKDR-PKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--R 321 (437)
Q Consensus 245 ~~~t~V~V~~~Dr-pgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~ 321 (437)
.+-..|+|...+. ||.++++...|.+.|+||........ . -+|.+... ..+++.+.|++. .. .
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~-~---is~~v~~~---------~~~~a~~~l~~~-~~~v~ 334 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT-E---VVFTVSDE---------DSEKAKEILENL-GLKPS 334 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc-e---EEEEEcHH---------HHHHHHHHHHHh-CCcEE
Confidence 3455677776555 99999999999999999998744321 1 23444321 233333334331 11 0
Q ss_pred c-CCCcEEEEEeC---CCcchHHHHHHHHHHcCCeEEE
Q 013722 322 A-SEGLELELYTD---DRFGLLSDITRILREYGLCIRR 355 (437)
Q Consensus 322 ~-~~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I~~ 355 (437)
. ..-..|.|.+. ++||+++++.++|.+.||+|.+
T Consensus 335 ~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 335 VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 1 12356667774 7899999999999999999975
No 183
>PRK09181 aspartate kinase; Validated
Probab=90.64 E-value=14 Score=39.12 Aligned_cols=106 Identities=14% Similarity=0.222 Sum_probs=69.1
Q ss_pred CeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCccc
Q 013722 26 HATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLN 102 (437)
Q Consensus 26 ~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 102 (437)
+.+.|+|.+. +.+|+.+++...|+++|++|. .+.+... --.|.|... . ...+.+.+.|......
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~--sis~~v~~~--~-----~~~~~~~~~L~~~~~~-- 394 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNAN--TITHYLWGS--L-----KTLKRVIAELEKRYPN-- 394 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCc--EEEEEEcCC--h-----HHHHHHHHHHHHhcCC--
Confidence 5667777544 689999999999999999998 3333221 223566321 1 1223444444432210
Q ss_pred CcceeeeecCCCceEEEEEEeCC--CcchHHHHHHHHHhCCCeEEEEEEE
Q 013722 103 SMRSSVGVVPSKEYTSIELTGTD--RPGLLSEVSAVLTDLSCSVVSAEIW 150 (437)
Q Consensus 103 ~~~r~v~~~~~~~~t~i~v~~~D--rpGLL~~I~~~l~~~g~~I~~A~i~ 150 (437)
..+. ..+...|.++|.. +||+.+++..+|++.|+||......
T Consensus 395 ---~~i~---~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg 438 (475)
T PRK09181 395 ---AEVT---VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS 438 (475)
T ss_pred ---ceEE---ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence 0121 1467788888754 8999999999999999999766543
No 184
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.33 E-value=1 Score=45.83 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=44.2
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164 (437)
Q Consensus 113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~ 164 (437)
-...+.|.|.-+|+||-+++|+..|...|+||.+.+|.-.-+....++.++-
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~ 338 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF 338 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence 3467899999999999999999999999999999999765556666666665
No 185
>PRK06349 homoserine dehydrogenase; Provisional
Probab=89.86 E-value=1.4 Score=46.07 Aligned_cols=65 Identities=22% Similarity=0.274 Sum_probs=46.7
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
.+.|.+...|+||.|++|+..|.++|++|.+..-....+.....+++++. .+..+.+++...|.+
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~----~~e~~l~~~i~~L~~ 412 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE----TSEAALRAALAAIEA 412 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe----CCHHHHHHHHHHHhc
Confidence 47899999999999999999999999999987665443344556667652 233444555555554
No 186
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.85 E-value=1.3 Score=34.47 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=37.2
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEEe
Q 013722 119 IELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKD 164 (437)
Q Consensus 119 i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~~ 164 (437)
+.+..+|+||-|+++-..|+.+|+|+...+.... +....=.|||.-
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 4455689999999999999999999999988763 344556777776
No 187
>PRK06291 aspartate kinase; Provisional
Probab=89.48 E-value=17 Score=38.51 Aligned_cols=103 Identities=11% Similarity=0.114 Sum_probs=67.9
Q ss_pred CCeeEEEEEeC---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-
Q 013722 245 RDYTAVTIRSK---DRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER- 320 (437)
Q Consensus 245 ~~~t~V~V~~~---DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~- 320 (437)
.+...|.|.+. +.+|+++++..+|.+.|+||......+.. .. -+|.|... ..+...+.|.+.+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse-~s-Isf~V~~~---------d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE-SN-ISLVVDEA---------DLEKALKALRREFGEG 387 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC-ce-EEEEEeHH---------HHHHHHHHHHHHHHHh
Confidence 34567777754 68999999999999999999876443322 11 23444442 222233334443332
Q ss_pred cc------CCCcEEEEEeC---CCcchHHHHHHHHHHcCCeEEEEEe
Q 013722 321 RA------SEGLELELYTD---DRFGLLSDITRILREYGLCIRRAEI 358 (437)
Q Consensus 321 ~~------~~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~I 358 (437)
.. ..-.+|.|.+. ++||+++++..+|.+.||+|..---
T Consensus 388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq 434 (465)
T PRK06291 388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ 434 (465)
T ss_pred cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence 11 12357888885 6899999999999999999985443
No 188
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=88.96 E-value=1.5 Score=45.15 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=43.5
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCC
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVD 380 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~ 380 (437)
.+.|-+..+|+||.|+++-.+|+.+|||+.+-.-...+.+-++ .||| |..|..-+
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d 352 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRS 352 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCC
Confidence 3556677789999999999999999999999888876666555 7887 55675533
No 189
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=88.67 E-value=18 Score=32.61 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=66.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE-EeC-CEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCc
Q 013722 27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYIS-SDG-GYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSM 104 (437)
Q Consensus 27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~-t~~-g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~ 104 (437)
...+.+.-.|.||.|+++++.|++.|+||.+-.+. |+. +..--++.+ .. . +..+++|.+.|....+.+
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv-~g--~----~~~~EQi~kQL~kLidV~--- 73 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV-SG--D----EQVLEQIIKQLNKLIDVL--- 73 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE-cC--C----cchHHHHHHHHHhhccce---
Confidence 45788999999999999999999999999998886 543 333323333 22 1 235577777776654321
Q ss_pred ceeeeec----CCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 105 RSSVGVV----PSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT 151 (437)
Q Consensus 105 ~r~v~~~----~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T 151 (437)
+.++.. -...-..+-+.+.-- ....+.+.....+.+|.+..-.+
T Consensus 74 -kV~d~~~~~~veRel~LiKv~~~~~--~R~ei~~~~~ifr~~vvDvs~~~ 121 (163)
T COG0440 74 -KVLDLTSEPHVERELALIKVSAEGS--ERGEIARITEIFRASVVDVSPES 121 (163)
T ss_pred -eEEEcCCcchhheeeEEEEEecCcc--chHHHHHHHHHhCceEEecCcce
Confidence 111111 111222333333221 14566677666777776655443
No 190
>PRK11899 prephenate dehydratase; Provisional
Probab=88.56 E-value=2.9 Score=41.17 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=42.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEeCCCCC
Q 013722 116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKDQSSGC 169 (437)
Q Consensus 116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~~~~g~ 169 (437)
.|.+-+..+|+||.|+++-.+|+.+|+|+.+.+..-.. +...=.|||.- .|.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~ 246 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH 246 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC
Confidence 56777777999999999999999999999999988644 44555777776 354
No 191
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=88.51 E-value=1.5 Score=39.35 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=34.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCC-EEE
Q 013722 29 VIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGG-YLM 68 (437)
Q Consensus 29 ~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g-~~~ 68 (437)
-+.+.+.|+||.|.+++++++++|.||..|+.+. .+| .+.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~ 45 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKAL 45 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEE
Confidence 4788999999999999999999999999999986 344 444
No 192
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=88.39 E-value=2.5 Score=46.51 Aligned_cols=66 Identities=23% Similarity=0.300 Sum_probs=49.0
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCce-eEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNAR-AAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~-~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
..-.+.|.|.+.||+|+|++|+.+|+..++||.+....+.+++ +.-.|.+.-. |..++..+-..|.
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~-------n~~~L~~i~~~l~ 690 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK-------NLNHLGRVLARLK 690 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC-------cHHHHHHHHHHHh
Confidence 3466789999999999999999999999999999998875333 4434444432 4556666666554
No 193
>PRK09034 aspartate kinase; Reviewed
Probab=88.35 E-value=15 Score=38.67 Aligned_cols=107 Identities=12% Similarity=0.137 Sum_probs=67.3
Q ss_pred CeeEEEEE---eCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-c
Q 013722 246 DYTAVTIR---SKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER-R 321 (437)
Q Consensus 246 ~~t~V~V~---~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-~ 321 (437)
+-+.|++. .++++|..+++...|++.|+||... +.+... -+|.+...+-. ...+..+.+.|+..+.. .
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~~s-is~~v~~~~~~----~a~~~~l~~el~~~~~~~~ 378 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGIDD-LSIIIRERQLT----PKKEDEILAEIKQELNPDE 378 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCCcE-EEEEEeHHHhh----HHHHHHHHHHHHHhhCCce
Confidence 34566666 4678999999999999999999975 222222 35666653210 00112333333322210 0
Q ss_pred c---CCCcEEEEEe---CCCcchHHHHHHHHHHcCCeEEEEEeee
Q 013722 322 A---SEGLELELYT---DDRFGLLSDITRILREYGLCIRRAEIST 360 (437)
Q Consensus 322 ~---~~~~~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A~I~T 360 (437)
. ..-..|.|.+ .++||+++++-.+|.++||||....-.+
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 0 1235788865 3789999999999999999998775434
No 194
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=88.26 E-value=1.5 Score=39.35 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=48.5
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722 116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT 190 (437)
Q Consensus 116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g 190 (437)
...+.+.-.|.||.|+++++.|+..|.||.+..+.- ......-+-.|+. | |+...+++...|.+..+-
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLidV 72 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLIDV 72 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhccc
Confidence 346788889999999999999999999999998864 3333333444444 2 234557777777765543
No 195
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.15 E-value=0.91 Score=47.18 Aligned_cols=50 Identities=12% Similarity=0.261 Sum_probs=43.4
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~ 164 (437)
....|.+.-.|+||.++.|+.+|+++|+||...+..+.++.+.-++.+..
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~ 386 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA 386 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC
Confidence 56788889999999999999999999999999999888877777665543
No 196
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=88.08 E-value=1.2 Score=42.53 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=32.9
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT 151 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T 151 (437)
...++.+.-.|-||+|++|+++|++.|.||.+.-+--
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~ 112 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL 112 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence 3557888889999999999999999999999988754
No 197
>PLN02551 aspartokinase
Probab=87.45 E-value=23 Score=38.14 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=78.8
Q ss_pred CCeeEEEEEeC---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHH---HH
Q 013722 245 RDYTAVTIRSK---DRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEA---AI 318 (437)
Q Consensus 245 ~~~t~V~V~~~---DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~---~l 318 (437)
.+-+.|+|.+. +.+|.++++...|.+.|+||.... + .... -+|.+...+-. ..+.+++.+.+ .|
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--s-Se~s-Is~~v~~~~~~------~~~~i~~~l~~l~~el 433 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--T-SEVS-ISLTLDPSKLW------SRELIQQELDHLVEEL 433 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--c-cCCE-EEEEEehhHhh------hhhhHHHHHHHHHHHh
Confidence 34457777654 689999999999999999999772 2 2222 24555553321 11122222222 12
Q ss_pred hh--cc---CCCcEEEEEeC--CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHH
Q 013722 319 ER--RA---SEGLELELYTD--DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQI 391 (437)
Q Consensus 319 ~~--~~---~~~~~iev~~~--DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L 391 (437)
.+ .. ..-.+|.|.+. .+||+++++-.+|.+.||||..-...+- ...=.|.|.+ ++.++.-++|
T Consensus 434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaS--einIS~vV~~--------~d~~~Av~aL 503 (521)
T PLN02551 434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGAS--KVNISLIVND--------DEAEQCVRAL 503 (521)
T ss_pred hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCC--CcEEEEEEeH--------HHHHHHHHHH
Confidence 21 01 12356777654 6799999999999999999987655342 2222355532 3445555566
Q ss_pred hhcccc
Q 013722 392 GRTILQ 397 (437)
Q Consensus 392 ~~~~~~ 397 (437)
++..+.
T Consensus 504 H~~Ff~ 509 (521)
T PLN02551 504 HSAFFE 509 (521)
T ss_pred HHHHhc
Confidence 665543
No 198
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.17 E-value=5.1 Score=31.76 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=41.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeE-EEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCI-RRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVK 399 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I-~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~ 399 (437)
++.|.-+||||=|++++.+|...+|+- ...+... +.+.-.+.+...+| ++..+++.+.|.+.-..+.
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~~anI~~~~y~~~~~--~~~~v~i~ie~~~~----~~~~~~i~~~L~~~G~~~~ 70 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIGPRNITEFNYRYADE--KDAHIFVGVSVANG----AEELAELLEDLKSAGYEVV 70 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhCCCceeEEEEEccCC--CeeEEEEEEEeCCc----HHHHHHHHHHHHHCCCCeE
Confidence 688899999999999999999555541 2233222 33333333432111 3567788888888655554
No 199
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=87.02 E-value=1.2 Score=42.58 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=48.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEE--EEEEEccCCCCCCcHHHHHHHHHHHHHH
Q 013722 249 AVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQ--EYYIKHVDGFPISSEAERQRVMACLEAA 317 (437)
Q Consensus 249 ~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald--~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 317 (437)
.+.++..|.||++.+++++|+..|+||-+.-+.-+...++. +.+++..|+ .+++.++.|+..
T Consensus 79 vinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~-------VveQa~rQiedl 142 (309)
T KOG2663|consen 79 VINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDG-------VVEQARRQIEDL 142 (309)
T ss_pred eEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHH-------HHHHHHHHHHHh
Confidence 57889999999999999999999999999988777666666 555555554 455656555553
No 200
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=86.66 E-value=1.7 Score=46.75 Aligned_cols=61 Identities=21% Similarity=0.406 Sum_probs=46.9
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee--cCCeEEEEEEEEcCCCCCCChHHHHHHHH
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEIST--MGRKVKDTFFVTDASGNPVDPKIVDSIQH 389 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T--~g~~a~D~F~v~d~~g~~l~~~~~~~l~~ 389 (437)
++.+=+.-.|+||.++.|+..|.+++|||...++.. -|+++.-++.+. ++++++.+++|++
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D----~~v~~~~l~~i~~ 514 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD----DPVPEEVLEELRA 514 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC----CCCCHHHHHHHhc
Confidence 456666779999999999999999999999998875 357777666663 3666666666653
No 201
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=86.64 E-value=4.9 Score=41.15 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=46.1
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-----cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722 114 KEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-----HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN 186 (437)
Q Consensus 114 ~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-----~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (437)
.....+.|.-+|+||.|++++..++++|.||.+..-.. ..+.+.-.+.+... +++..+.|.+.|.+
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD 373 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 34458999999999999999999999999999885442 12344445555442 24455566666553
No 202
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=86.55 E-value=3.7 Score=42.09 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=30.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEE
Q 013722 248 TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTV 280 (437)
Q Consensus 248 t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i 280 (437)
..+.|..+|+||.|.+++..+.+.|.||.+..-
T Consensus 306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~ 338 (380)
T TIGR01127 306 VRIETVLPDRPGALYHLLESIAEARANIVKIDH 338 (380)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEe
Confidence 388999999999999999999999999997743
No 203
>PRK09084 aspartate kinase III; Validated
Probab=86.54 E-value=10 Score=39.91 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=63.2
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc
Q 013722 25 EHATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL 101 (437)
Q Consensus 25 ~~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~ 101 (437)
.+...|+|.+. +.+|.++++...|+++|++|.--. + ... --.|.|...+-..-......+++.+.|....
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--s-se~-sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~--- 376 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--T-SEV-SVSLTLDTTGSTSTGDTLLTQALLTELSQLC--- 376 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--c-cCc-EEEEEEechhhhhhhhHHHHHHHHHHHhcCC---
Confidence 35667888654 689999999999999999998554 2 221 2246664321111000011233333333211
Q ss_pred cCcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCC
Q 013722 102 NSMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSC 142 (437)
Q Consensus 102 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~ 142 (437)
.+. -..+...|++.|. ++||+++++..+|+..++
T Consensus 377 -----~i~--~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 377 -----RVE--VEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred -----eEE--EECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 121 2336778888886 789999999999987543
No 204
>PRK08818 prephenate dehydrogenase; Provisional
Probab=86.52 E-value=2.2 Score=43.67 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=38.8
Q ss_pred ceEEEEEEeC-CCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722 115 EYTSIELTGT-DRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164 (437)
Q Consensus 115 ~~t~i~v~~~-DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~ 164 (437)
..+.+.+.-+ |+||-|++|+.+|+.+|+||.+.++ .......-.|+|.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence 4677777776 9999999999999999999999999 33322333388876
No 205
>PRK08198 threonine dehydratase; Provisional
Probab=86.51 E-value=5.2 Score=41.35 Aligned_cols=38 Identities=21% Similarity=0.475 Sum_probs=33.7
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW 150 (437)
Q Consensus 113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~ 150 (437)
......+.|.-+|+||-|+++...++.+|.||.+....
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 34556899999999999999999999999999988765
No 206
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=86.38 E-value=3.7 Score=40.32 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=42.8
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCce-eEEEEEEEeCCCCCc
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNAR-AAALLHVKDQSSGCA 170 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~-~~d~F~V~~~~~g~~ 170 (437)
..|.+-+..+|+||-|+++-++|+.+|||+......-.... ..=.|||.- .|..
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~~ 247 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGHI 247 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecCc
Confidence 47788888889999999999999999999999998764444 455666655 3543
No 207
>PRK06382 threonine dehydratase; Provisional
Probab=86.24 E-value=11 Score=39.18 Aligned_cols=68 Identities=22% Similarity=0.164 Sum_probs=47.7
Q ss_pred CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeee----c-CCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013722 324 EGLELELYTDDRFGLLSDITRILREYGLCIRRAEIST----M-GRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTIL 396 (437)
Q Consensus 324 ~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T----~-g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~ 396 (437)
+.+.+.|.-+|+||-|++|++.|.++|+||.+..... . -+.+.=+|.|... +++..++|.+.|.+.-.
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~~Gy 401 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALREMGY 401 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHHCCC
Confidence 3578999999999999999999999999998766531 1 1234445555321 23444677777776433
No 208
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=86.00 E-value=6.8 Score=43.30 Aligned_cols=86 Identities=13% Similarity=0.142 Sum_probs=56.6
Q ss_pred HHHhhccCCCEEEEeeCC---CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEeCCCCCC
Q 013722 6 AKLIRRMNPPRVVIDNDV---CEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSD-GGYLMDVFYVTDINGQKI 81 (437)
Q Consensus 6 ~~~~~~~~~~~V~v~~~~---~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~ 81 (437)
.++..+.+.-.|.+.=.. ..-.+.|.|.+.||+|+|++++.+|+..+.||......+. ++.+.-.|.+.-
T Consensus 603 ~~~~~~~per~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v------ 676 (701)
T COG0317 603 LQLAGHAPERVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV------ 676 (701)
T ss_pred HHhhhcCcceEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE------
Confidence 344444433344444222 2345699999999999999999999999999999988774 444443344422
Q ss_pred CcHHHHHHHHHHHhhc
Q 013722 82 GDQATISYIKTTVETN 97 (437)
Q Consensus 82 ~~~~~~~~l~~~L~~~ 97 (437)
.+-..+..|...|...
T Consensus 677 ~n~~~L~~i~~~l~~~ 692 (701)
T COG0317 677 KNLNHLGRVLARLKQL 692 (701)
T ss_pred CcHHHHHHHHHHHhcC
Confidence 2234666677776654
No 209
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=85.64 E-value=1.5 Score=47.01 Aligned_cols=61 Identities=18% Similarity=0.368 Sum_probs=47.2
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec--CCeEEEEEEEEcCCCCCCChHHHHHHHH
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM--GRKVKDTFFVTDASGNPVDPKIVDSIQH 389 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~--g~~a~D~F~v~d~~g~~l~~~~~~~l~~ 389 (437)
++.+=+.-.||||.+..|+..|.+++|||...++... |++|.-++.+. ++++++.+++|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D----~~v~~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD----QPVPDEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC----CCCCHHHHHHHhc
Confidence 4566667799999999999999999999988888644 67777677663 3667666666664
No 210
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=85.58 E-value=35 Score=35.96 Aligned_cols=108 Identities=12% Similarity=0.178 Sum_probs=69.1
Q ss_pred CCeEEEEEEeCC---CccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc
Q 013722 25 EHATVIQVDSVN---RHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL 101 (437)
Q Consensus 25 ~~~~~I~V~~~D---rpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~ 101 (437)
.+...|+|..+. .+|.++++...|+++|+||.--........ -+|.+...+. +...+.+++...+...
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-- 375 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-- 375 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence 356677776543 459999999999999999974333222222 3466632211 1233444444432211
Q ss_pred cCcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEE
Q 013722 102 NSMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAE 148 (437)
Q Consensus 102 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~ 148 (437)
++ ....+...|.+++. ..||..+++..+|++.++||....
T Consensus 376 -----~v--~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 376 -----EV--EVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred -----eE--EeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 11 22335667777764 678999999999999999999877
No 211
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=85.35 E-value=28 Score=39.56 Aligned_cols=102 Identities=10% Similarity=0.068 Sum_probs=68.4
Q ss_pred CCeeEEEEEeC---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhc
Q 013722 245 RDYTAVTIRSK---DRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERR 321 (437)
Q Consensus 245 ~~~t~V~V~~~---DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 321 (437)
.+.+.|.|.+. .+||+.+++..+|.+.|+||......+ .... -+|.|...+ .+...+.|.+.+...
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~s-Isf~V~~~d---------~~~av~~L~~~f~~e 381 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYS-ISFCVPQSD---------AAKAKRALEEEFALE 381 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCce-EEEEEeHHH---------HHHHHHHHHHHHHHH
Confidence 45667888754 679999999999999999997664432 2222 245555432 223333344433211
Q ss_pred -----c------CCCcEEEEEeC---CCcchHHHHHHHHHHcCCeEEEEE
Q 013722 322 -----A------SEGLELELYTD---DRFGLLSDITRILREYGLCIRRAE 357 (437)
Q Consensus 322 -----~------~~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~ 357 (437)
. ..-.+|.|.+. ++||+++++-.+|.+.||||..-.
T Consensus 382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 1 12357888775 789999999999999999998654
No 212
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.14 E-value=3.3 Score=35.17 Aligned_cols=49 Identities=10% Similarity=0.069 Sum_probs=39.3
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCce-eEEEEEEEe
Q 013722 116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNAR-AAALLHVKD 164 (437)
Q Consensus 116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~-~~d~F~V~~ 164 (437)
.+.+.+..+|+||-|+++-..|+.+|+|+...+.....+. ..=.|+|.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 4667777799999999999999999999999988774433 445667765
No 213
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.98 E-value=7.1 Score=30.28 Aligned_cols=61 Identities=10% Similarity=0.233 Sum_probs=40.1
Q ss_pred EEEEE---eCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHH-HHHHHHHhh
Q 013722 327 ELELY---TDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIV-DSIQHQIGR 393 (437)
Q Consensus 327 ~iev~---~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~-~~l~~~L~~ 393 (437)
.|+|. .+++||++++|-.+|+++||+|..- +| ++ ..=.|.|.. ..+..++.. ++|.+.|.+
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI--~~-s~-~~iSftv~~--~d~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI--TT-SE-ISVALTLDN--TGSTSDQLLTQALLKELSQ 67 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE--ee-cC-CEEEEEEec--cccchhHHHHHHHHHHHHh
Confidence 45553 4788999999999999999999886 33 33 333566643 222222333 367777776
No 214
>PRK06545 prephenate dehydrogenase; Validated
Probab=84.70 E-value=2.6 Score=42.94 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=40.6
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT 372 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~ 372 (437)
.+.+.|.-+||||-|+.|+..|.+.||||.+-+|.-.-+....+..++
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~ 337 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS 337 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence 378999999999999999999999999999999965555555566664
No 215
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=84.64 E-value=24 Score=36.90 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=66.0
Q ss_pred CeEEEEEEeCC-C-ccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccC
Q 013722 26 HATVIQVDSVN-R-HGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNS 103 (437)
Q Consensus 26 ~~~~I~V~~~D-r-pGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~ 103 (437)
+...|+|.+.+ . +|.++++...|+++|++|......+.. .. -.|.|...+ .+...+.|...... .
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~---------~~~a~~~L~~~~~~--~ 367 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKED---------ADQAKTLLKSELNL--S 367 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHH---------HHHHHHHHHHHHHh--c
Confidence 45667777544 3 799999999999999999865433322 11 235553211 11112222211000 0
Q ss_pred cceeeeecCCCceEEEEEEe---CCCcchHHHHHHHHHhCCCeEEEEE
Q 013722 104 MRSSVGVVPSKEYTSIELTG---TDRPGLLSEVSAVLTDLSCSVVSAE 148 (437)
Q Consensus 104 ~~r~v~~~~~~~~t~i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~ 148 (437)
.-..+ ....+...+++.+ .++||++++|..+|+.+|+||....
T Consensus 368 ~~~~I--~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 368 ALSSV--EVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CcceE--EEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 00111 2234677888865 4789999999999999999997765
No 216
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=84.32 E-value=1.1e+02 Score=37.35 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=99.5
Q ss_pred CCcEEEEEecCCCCeeEEEEEeCCC---CchHHHHHHHHHhC-CCeEEEEEEEe-cCCeEEEEEEEEccCCCCCCcHHHH
Q 013722 233 SRPHVTILDCSDRDYTAVTIRSKDR---PKLLFDTVCCLTDM-QYVVYHGTVVT-GRMEAYQEYYIKHVDGFPISSEAER 307 (437)
Q Consensus 233 ~~p~V~v~~~~~~~~t~V~V~~~Dr---pgL~~~v~~~L~~~-~lnI~~a~i~t-~~g~ald~F~V~~~~g~~~~~~~~~ 307 (437)
....+.++......+.-+.||.|-. ..+-.++...|.+. +-...+-.... ....+.--|++....+..... ..
T Consensus 327 ~rvRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~--d~ 404 (1528)
T PF05088_consen 327 RRVRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDI--DV 404 (1528)
T ss_pred CceeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCC--CH
Confidence 4567777888888888888887743 34666676666554 33444444333 345777788888777655221 12
Q ss_pred HHHHHHHHHH-----------Hh------------------------hcc-C----------------------------
Q 013722 308 QRVMACLEAA-----------IE------------------------RRA-S---------------------------- 323 (437)
Q Consensus 308 ~~l~~~L~~~-----------l~------------------------~~~-~---------------------------- 323 (437)
++|++.|.++ |. ..+ |
T Consensus 405 ~~le~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~ 484 (1528)
T PF05088_consen 405 EALEARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAG 484 (1528)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCC
Confidence 3333333222 10 000 0
Q ss_pred ---CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeec----C-CeEEEEEEEEcCCCCCCCh-HHHHHHHHHHhh
Q 013722 324 ---EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTM----G-RKVKDTFFVTDASGNPVDP-KIVDSIQHQIGR 393 (437)
Q Consensus 324 ---~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~----g-~~a~D~F~v~d~~g~~l~~-~~~~~l~~~L~~ 393 (437)
....+.|....+|..|++|.-+|..+|+.|....-..+ | ..-...|++....+..++. +..+.+.+++..
T Consensus 485 ~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~ 563 (1528)
T PF05088_consen 485 AGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEA 563 (1528)
T ss_pred CCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHH
Confidence 02578999999999999999999999999987654333 2 2456789998777666553 344555555554
No 217
>PRK06349 homoserine dehydrogenase; Provisional
Probab=84.09 E-value=5.1 Score=41.83 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=41.4
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164 (437)
Q Consensus 113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~ 164 (437)
....+.|.+...|+||.|++|+++|.+++++|.+.......+....++.++.
T Consensus 345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 3456789999999999999999999999999998866543334556666776
No 218
>PRK08818 prephenate dehydrogenase; Provisional
Probab=83.99 E-value=2.2 Score=43.73 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=36.1
Q ss_pred CcEEEEEeC-CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722 325 GLELELYTD-DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT 372 (437)
Q Consensus 325 ~~~iev~~~-DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~ 372 (437)
.+.|.+.-+ |+||-|++|..+|+.+||||.+-.+ .....-+-.|+|.
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~ 342 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIG 342 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEE
Confidence 356777776 9999999999999999999999888 2222222348884
No 219
>PRK12483 threonine dehydratase; Reviewed
Probab=83.84 E-value=47 Score=35.74 Aligned_cols=144 Identities=12% Similarity=0.061 Sum_probs=92.4
Q ss_pred CCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH-Hh---
Q 013722 245 RDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGR-MEAYQEYYIKHVDGFPISSEAERQRVMACLEAA-IE--- 319 (437)
Q Consensus 245 ~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~-g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~-l~--- 319 (437)
.....+.|..|||||-|.+++..|... ||.+..-.... +.+. .++..+..+. +..+++|.+.|++. +.
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~~~----~~~~~~i~~~l~~~g~~~~d 415 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAH-LFVGVQTHPR----HDPRAQLLASLRAQGFPVLD 415 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeE-EEEEEEeCCh----hhhHHHHHHHHHHCCCCeEE
Confidence 455688899999999999999999988 88876554432 3332 3333332221 11236666676553 10
Q ss_pred -----------h-----ccC---CCcEEEEEeCCCcchHHHHHHHHHH-cCCeEEEEEeeecCCeEEEEEEEEcCCCCCC
Q 013722 320 -----------R-----RAS---EGLELELYTDDRFGLLSDITRILRE-YGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379 (437)
Q Consensus 320 -----------~-----~~~---~~~~iev~~~DrpGLL~~I~~~l~~-~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l 379 (437)
| +.+ +.-.+.|+-+.|||=|-++++.|.. .+|+-++=+. .|...-.+|.=.. +
T Consensus 416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~--~~~~~a~v~vgi~-----~ 488 (521)
T PRK12483 416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRN--HGAADGRVLAGLQ-----V 488 (521)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecC--CCCCceEEEEEEe-----e
Confidence 0 111 2358999999999999999999997 4777766655 3554445554222 1
Q ss_pred ChHHHHHHHHHHhhccccccccC
Q 013722 380 DPKIVDSIQHQIGRTILQVKGNL 402 (437)
Q Consensus 380 ~~~~~~~l~~~L~~~~~~~~~~~ 402 (437)
.+++.+++.+.|.+.-..+.|..
T Consensus 489 ~~~~~~~~~~~l~~~gy~~~d~t 511 (521)
T PRK12483 489 PEDERAALDAALAALGYPYWEET 511 (521)
T ss_pred ChhHHHHHHHHHHHCCCCeEECC
Confidence 23566888888888766665543
No 220
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.20 E-value=6.6 Score=30.45 Aligned_cols=56 Identities=18% Similarity=0.379 Sum_probs=38.1
Q ss_pred CCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 333 DDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 333 ~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
++.||++++|-++|+++||+|..-- + ++ ..=.|.|.... .-+.++..++|.++|.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccchHHHHHHHHHHHh
Confidence 5789999999999999999999863 3 33 22256554322 11344456777777776
No 221
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=83.17 E-value=36 Score=39.01 Aligned_cols=104 Identities=11% Similarity=0.109 Sum_probs=64.8
Q ss_pred CCeEEEEEE---eCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc
Q 013722 25 EHATVIQVD---SVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL 101 (437)
Q Consensus 25 ~~~~~I~V~---~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~ 101 (437)
++.+.|+|. ..+.+|.++++...|+++|++|.-- .+. +.. -+|.+.+.+ .....+.++.+...|....
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~ss-e~s-is~~i~~~~--~~~~~~~~~~l~~~l~~~~--- 390 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSS-ETN-VTVSLDPSE--NLVNTDVLAALSADLSQIC--- 390 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcC-CCE-EEEEEcccc--ccchHHHHHHHHHHHhhcC---
Confidence 356677775 4468999999999999999999643 232 211 135553321 1101123444444444311
Q ss_pred cCcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeE
Q 013722 102 NSMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSV 144 (437)
Q Consensus 102 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I 144 (437)
.+. ...+...|+|+|. ++||+++++..+|+..|+++
T Consensus 391 -----~i~--~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 391 -----RVK--IIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred -----cEE--EeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 111 1235678899885 78999999999999977655
No 222
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=83.03 E-value=26 Score=36.64 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=64.0
Q ss_pred CCeeEEEEEeCCC--CchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhcc
Q 013722 245 RDYTAVTIRSKDR--PKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRA 322 (437)
Q Consensus 245 ~~~t~V~V~~~Dr--pgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~ 322 (437)
.+...|+|.+.+- +|.++++...|.+.|+||......+. ... -+|.|...+ .++..+.|....+...
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e~s-Is~~I~~~~---------~~~a~~~L~~~~~~~~ 368 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-ETS-ISFTVDKED---------ADQAKTLLKSELNLSA 368 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-Cce-EEEEEEHHH---------HHHHHHHHHHHHHhcC
Confidence 3455666665433 79999999999999999987653222 212 245554432 1122222222111111
Q ss_pred -------CCCcEEEEEe---CCCcchHHHHHHHHHHcCCeEEEEE
Q 013722 323 -------SEGLELELYT---DDRFGLLSDITRILREYGLCIRRAE 357 (437)
Q Consensus 323 -------~~~~~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A~ 357 (437)
..-..|.|.+ .++||++++|.++|++.||||....
T Consensus 369 ~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 369 LSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred cceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 1235688865 4789999999999999999998765
No 223
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.25 E-value=3.4 Score=44.39 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=39.6
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEE
Q 013722 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVK 163 (437)
Q Consensus 113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~ 163 (437)
....+.+-+...|+||.+..|+..|.++++||...++.. .++.+.-++.+.
T Consensus 449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D 501 (526)
T PRK13581 449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD 501 (526)
T ss_pred eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC
Confidence 335566667779999999999999999999999999876 345555555543
No 224
>PRK09181 aspartate kinase; Validated
Probab=81.81 E-value=15 Score=38.94 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=79.3
Q ss_pred CeeEEEEEeC---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-c
Q 013722 246 DYTAVTIRSK---DRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER-R 321 (437)
Q Consensus 246 ~~t~V~V~~~---DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-~ 321 (437)
+.+.|+|.+. +.+|+.+++...|.+.++||.. +.+. . .-.+|.+... . ...+++.+.|++.+.. .
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~ss-~-~sis~~v~~~--~-----~~~~~~~~~L~~~~~~~~ 396 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KATN-A-NTITHYLWGS--L-----KTLKRVIAELEKRYPNAE 396 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EEec-C-cEEEEEEcCC--h-----HHHHHHHHHHHHhcCCce
Confidence 4566677543 6899999999999999999983 2222 1 1124555442 1 1334444555543321 1
Q ss_pred --cCCCcEEEEEeCC--CcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013722 322 --ASEGLELELYTDD--RFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTIL 396 (437)
Q Consensus 322 --~~~~~~iev~~~D--rpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~ 396 (437)
...-.+|.|.+.. +||+.+++-.+|.+.||||..---.+- ...=.|.|. .++.++.-+.|++..+
T Consensus 397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~s--e~~Is~vV~--------~~d~~~Av~~lH~~f~ 465 (475)
T PRK09181 397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMR--QVNMQFVVD--------EDDYEKAICALHEALV 465 (475)
T ss_pred EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCC--cceEEEEEe--------HHHHHHHHHHHHHHHh
Confidence 1334678888765 899999999999999999976444221 112235553 2344555566666544
No 225
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=81.65 E-value=16 Score=26.53 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=27.7
Q ss_pred EEEEEe---CCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 118 SIELTG---TDRPGLLSEVSAVLTDLSCSVVSAEIWT 151 (437)
Q Consensus 118 ~i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~i~T 151 (437)
.|++.| .+.||++++|..+|+++|+++......+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 466776 4789999999999999999998775433
No 226
>PLN02317 arogenate dehydratase
Probab=81.38 E-value=5.8 Score=40.75 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=40.0
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCe---------------EEEEEEEEcCCCCC
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRK---------------VKDTFFVTDASGNP 378 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~---------------a~D~F~v~d~~g~~ 378 (437)
|.|-+.-.|+||.|+++-.+|+.+|||+.+-.-.....+ -+=.||| |.+|..
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~ 350 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASM 350 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCc
Confidence 566667789999999999999999999998877665443 2237888 455654
No 227
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=81.35 E-value=40 Score=35.57 Aligned_cols=117 Identities=11% Similarity=0.065 Sum_probs=70.0
Q ss_pred CCeeEEEEEeCC---CCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHh-h
Q 013722 245 RDYTAVTIRSKD---RPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIE-R 320 (437)
Q Consensus 245 ~~~t~V~V~~~D---rpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~-~ 320 (437)
.+.+.|+|..+. ++|..+++...|.+.|+||..-........ -+|.+...+.. ...+.+.+...+.+. -
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~~-----~a~~~l~~~~~~~~~~v 377 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDAP-----RALRALLEEKLELLAEV 377 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhHH-----HHHHHHHHHHhhhcceE
Confidence 455677776443 459999999999999999986544332222 34555443321 122222222222111 0
Q ss_pred ccCC-CcEEEEEe---CCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722 321 RASE-GLELELYT---DDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT 372 (437)
Q Consensus 321 ~~~~-~~~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~ 372 (437)
...+ -.+|.+.+ ...||..+.+.++|++.||||.+.. + ....=.|.|.
T Consensus 378 ~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--s--Se~~Is~vV~ 429 (447)
T COG0527 378 EVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--S--SEISISFVVD 429 (447)
T ss_pred EeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE--c--CCceEEEEEc
Confidence 0111 23566665 4678999999999999999999876 1 1233357664
No 228
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=80.69 E-value=7.9 Score=39.96 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=41.1
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEe
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKD 164 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~ 164 (437)
..|.+-+..+|+||.|+++-..|+.+|+|+.+.+..- .++...=.|||.-
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~ 346 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV 346 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence 3566777778999999999999999999999999885 4445666777776
No 229
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.65 E-value=14 Score=27.11 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=27.5
Q ss_pred EEEEEeC---CCcchHHHHHHHHHHcCCeEEEEEeee
Q 013722 327 ELELYTD---DRFGLLSDITRILREYGLCIRRAEIST 360 (437)
Q Consensus 327 ~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~I~T 360 (437)
.|.+.+. ++||+++++.++|.+.|+++...--++
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555554 789999999999999999998775544
No 230
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.60 E-value=19 Score=26.29 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=28.0
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 118 SIELTGT---DRPGLLSEVSAVLTDLSCSVVSAEIWT 151 (437)
Q Consensus 118 ~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~i~T 151 (437)
.|++.|. ++||+++++..+|++.|+++......+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 5666665 789999999999999999998775544
No 231
>PRK08198 threonine dehydratase; Provisional
Probab=80.12 E-value=13 Score=38.43 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=46.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-----eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhc
Q 013722 26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-----DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETN 97 (437)
Q Consensus 26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-----~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 97 (437)
....+.|.-+|+||-|++++..+++.|.||.+-.... ..+.+.-.+.| +.. +++..+.|.+.|++.
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~i-e~~-----~~~~~~~l~~~L~~~ 396 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTL-ETR-----GPEHIEEILDALRDA 396 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEE-EeC-----CHHHHHHHHHHHHHC
Confidence 4568999999999999999999999999999887753 22444333333 221 224556777777653
No 232
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=79.68 E-value=16 Score=26.56 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=27.5
Q ss_pred EEEEEe---CCCcchHHHHHHHHHHcCCeEEEEEeee
Q 013722 327 ELELYT---DDRFGLLSDITRILREYGLCIRRAEIST 360 (437)
Q Consensus 327 ~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A~I~T 360 (437)
.|.+.+ .+.||++++|.++|.+.||++..---++
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 456666 4789999999999999999998765433
No 233
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=79.42 E-value=19 Score=26.59 Aligned_cols=28 Identities=14% Similarity=0.512 Sum_probs=24.8
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCCeEE
Q 013722 118 SIELTGT---DRPGLLSEVSAVLTDLSCSVV 145 (437)
Q Consensus 118 ~i~v~~~---DrpGLL~~I~~~l~~~g~~I~ 145 (437)
.|.+.|. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5677775 789999999999999999996
No 234
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=78.59 E-value=3.6 Score=36.76 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=29.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE
Q 013722 26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYIS 61 (437)
Q Consensus 26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~ 61 (437)
+..++.....+.||+++.+++.++++|++|..+-..
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 444555556789999999999999999999977653
No 235
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=78.17 E-value=4.4 Score=43.53 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=39.4
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--cCceeEEEEEEEe
Q 013722 114 KEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--HNARAAALLHVKD 164 (437)
Q Consensus 114 ~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~~~~~~d~F~V~~ 164 (437)
.....+-+.-.|+||.+..|+.+|.++++||...++.. .++.+.-++.+..
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~ 501 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ 501 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC
Confidence 34556666779999999999999999999999999876 4455555555433
No 236
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=76.59 E-value=16 Score=27.06 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=24.2
Q ss_pred eCCCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722 123 GTDRPGLLSEVSAVLTDLSCSVVSAEIW 150 (437)
Q Consensus 123 ~~DrpGLL~~I~~~l~~~g~~I~~A~i~ 150 (437)
.+|+||.++++..+|+++|++|......
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 4789999999999999999999866543
No 237
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.43 E-value=11 Score=26.50 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=24.7
Q ss_pred eCCCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722 123 GTDRPGLLSEVSAVLTDLSCSVVSAEIW 150 (437)
Q Consensus 123 ~~DrpGLL~~I~~~l~~~g~~I~~A~i~ 150 (437)
.+|.||.++++..+|+++|++|......
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 4788999999999999999999877653
No 238
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=76.05 E-value=20 Score=26.47 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=24.3
Q ss_pred EEEEEeC---CCcchHHHHHHHHHHcCCeEE
Q 013722 327 ELELYTD---DRFGLLSDITRILREYGLCIR 354 (437)
Q Consensus 327 ~iev~~~---DrpGLL~~I~~~l~~~~i~I~ 354 (437)
.|.|.+. +.||+++++..+|.+.||++.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4666664 789999999999999999996
No 239
>PRK11898 prephenate dehydratase; Provisional
Probab=76.01 E-value=9.1 Score=37.72 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=44.6
Q ss_pred cEEEEEeC-CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 326 LELELYTD-DRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 326 ~~iev~~~-DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
+.|-+.-. |+||-|+++-.+|+++|||+.+-.-.-...+.++ .||| |.+|.. .++..+++-+.|.+
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~-~~~~~~~al~~L~~ 264 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI-DDVLVAEALKELEA 264 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccC-CCHHHHHHHHHHHH
Confidence 34555554 4699999999999999999999888766555444 7777 456654 32233444444444
No 240
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=75.15 E-value=22 Score=25.83 Aligned_cols=51 Identities=22% Similarity=0.432 Sum_probs=34.3
Q ss_pred CCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHH
Q 013722 333 DDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQI 391 (437)
Q Consensus 333 ~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L 391 (437)
.++||+.++|-++|+++|+++..- +| ++ ..=.|+|.... . ++..++|.++|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i--~t-~~-~~is~~v~~~~---~-~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI--PT-SE-NSVTLYLDDSL---L-PKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE--ec-CC-CEEEEEEehhh---h-hHHHHHHHHhh
Confidence 478999999999999999999986 33 33 33367775421 1 23445555544
No 241
>PRK08526 threonine dehydratase; Provisional
Probab=74.71 E-value=57 Score=33.81 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=47.2
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecC-----ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722 114 KEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHN-----ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN 186 (437)
Q Consensus 114 ~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~-----~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (437)
.....+.+.-+||||-|++++..+...+.||....-.... +.+.-.+.+... ++++.+.+.+.|.+
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~-------~~~~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK-------GKEHQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999987764422 223333334431 46677777777653
No 242
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=73.97 E-value=25 Score=31.32 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=51.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhccCCC-c
Q 013722 248 TAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASEG-L 326 (437)
Q Consensus 248 t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~-~ 326 (437)
..+.|.-+|+||-+..+..=|...|.||+..- +. .+. ++.|+- .
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIi-H~--------------r~k--------------------k~g~r~pV 50 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITII-HS--------------RDK--------------------KYGPRVPV 50 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEE-ee--------------cCc--------------------ccCCceeE
Confidence 35678899999999999999999999998431 11 110 001121 1
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEE
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRA 356 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A 356 (437)
.|.+ -.||.-....+.+.+.+.|++|.+.
T Consensus 51 ~i~~-~~d~~~~~~~i~~~~e~~Gi~I~~~ 79 (170)
T COG2061 51 QIVF-EGDREDKDAKIIRLLEEEGIIIIRF 79 (170)
T ss_pred EEEE-EecccHHHHHHHHHHHhCCcEEEEe
Confidence 2222 3477778899999999999999765
No 243
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=73.65 E-value=21 Score=26.30 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=23.6
Q ss_pred eCCCcchHHHHHHHHHHcCCeEEEEEe
Q 013722 332 TDDRFGLLSDITRILREYGLCIRRAEI 358 (437)
Q Consensus 332 ~~DrpGLL~~I~~~l~~~~i~I~~A~I 358 (437)
.+|+||.++++.++|.++|++|....-
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 368899999999999999999986644
No 244
>PRK14630 hypothetical protein; Provisional
Probab=73.45 E-value=27 Score=30.77 Aligned_cols=92 Identities=11% Similarity=0.010 Sum_probs=61.8
Q ss_pred CCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhccCCCcEEEEEeCCC
Q 013722 256 DRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRASEGLELELYTDDR 335 (437)
Q Consensus 256 DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~iev~~~Dr 335 (437)
|...+...+...+..+|+.+.+......++..+-..++..++|-.+ +.++.+-+.+...|....+..|.+||++|.=
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gV~i---dDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGl 82 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDSFGV---DTLCDLHKMILLILEAVLKYNFSLEISTPGI 82 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCCH---HHHHHHHHHHHHHhcccCCCCeEEEEeCCCC
Confidence 3445666778889999999999998776543334666666666433 4688888888777766667789999998644
Q ss_pred cchHHHHHHHHHHcC
Q 013722 336 FGLLSDITRILREYG 350 (437)
Q Consensus 336 pGLL~~I~~~l~~~~ 350 (437)
-.-|......-.-.|
T Consensus 83 dRpL~~~~df~r~~G 97 (143)
T PRK14630 83 NRKIKSDREFKIFEG 97 (143)
T ss_pred CCcCCCHHHHHHhCC
Confidence 333444444333333
No 245
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=73.28 E-value=6.6 Score=35.15 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=28.9
Q ss_pred ceEEEEEE--eCCCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722 115 EYTSIELT--GTDRPGLLSEVSAVLTDLSCSVVSAEIW 150 (437)
Q Consensus 115 ~~t~i~v~--~~DrpGLL~~I~~~l~~~g~~I~~A~i~ 150 (437)
+.-++++. ..+.||+++.+++.++++||+|..+-..
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 34445554 5678999999999999999999988754
No 246
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=73.24 E-value=57 Score=37.10 Aligned_cols=105 Identities=13% Similarity=0.072 Sum_probs=67.9
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc
Q 013722 25 EHATVIQVDSV---NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL 101 (437)
Q Consensus 25 ~~~~~I~V~~~---DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~ 101 (437)
.+...|+|.+. +.+|.++++..+|+++|++|.--...+. +.. -.|.+... ..+.+.+.|.... .
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~s-is~~i~~~---------~~~~~~~~l~~~~-~- 381 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQL-LQLAYTSE---------VADSALKLLDDAA-L- 381 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-CcE-EEEEEeHH---------HHHHHHHHHHhhc-C-
Confidence 35667788765 7889999999999999999975443322 221 22444211 1223344444321 1
Q ss_pred cCcceeeeecCCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEE
Q 013722 102 NSMRSSVGVVPSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSA 147 (437)
Q Consensus 102 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A 147 (437)
...+ .-..+...|+|+|. .++|+.+++..+|++.|+++..-
T Consensus 382 ---~~~i--~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 382 ---PGEL--KLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred ---CCcE--EEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 0112 12236778999984 68999999999999999999554
No 247
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=73.10 E-value=18 Score=31.48 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=41.8
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEE
Q 013722 24 CEHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYV 73 (437)
Q Consensus 24 ~~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V 73 (437)
......+.+.-.||-|.|+++..++++.++||..-..+- .+|.+--+..+
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi 119 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSI 119 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEE
Confidence 345678899999999999999999999999999877764 67877655555
No 248
>PRK09084 aspartate kinase III; Validated
Probab=72.89 E-value=35 Score=35.92 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=61.0
Q ss_pred CCeeEEEEEeC---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-
Q 013722 245 RDYTAVTIRSK---DRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER- 320 (437)
Q Consensus 245 ~~~t~V~V~~~---DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~- 320 (437)
.+-..|+|.+. +.+|.++++...|.+.|+||..-.. ... --+|.+...+-... ....+...+.+.+++
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s---se~-sIs~~i~~~~~~~~----~~~~~~~~l~~el~~~ 375 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT---SEV-SVSLTLDTTGSTST----GDTLLTQALLTELSQL 375 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec---cCc-EEEEEEechhhhhh----hhHHHHHHHHHHHhcC
Confidence 45567777654 6899999999999999999997752 121 23556655331110 111122222222321
Q ss_pred -cc---CCCcEEEEEeC---CCcchHHHHHHHHHHcCC
Q 013722 321 -RA---SEGLELELYTD---DRFGLLSDITRILREYGL 351 (437)
Q Consensus 321 -~~---~~~~~iev~~~---DrpGLL~~I~~~l~~~~i 351 (437)
+. +.-.+|.|.+. ++||+++++..+|.+.++
T Consensus 376 ~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 376 CRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred CeEEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 11 22357888886 789999999999987543
No 249
>PRK12483 threonine dehydratase; Reviewed
Probab=72.51 E-value=1.4e+02 Score=32.06 Aligned_cols=115 Identities=14% Similarity=0.152 Sum_probs=70.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhcc-Cc--
Q 013722 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSD-GGYLMDVFYVTDINGQKIGDQATISYIKTTVETNA-SF-- 100 (437)
Q Consensus 25 ~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~-~~-- 100 (437)
.....+.|.-|||||-|.+++.+|... ||.+-.-... .+.+. +++...-.+. ++.++.|.++|.+.. ..
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~~~----~~~~~~i~~~l~~~g~~~~d 415 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAH-LFVGVQTHPR----HDPRAQLLASLRAQGFPVLD 415 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeE-EEEEEEeCCh----hhhHHHHHHHHHHCCCCeEE
Confidence 356789999999999999999999988 8876655432 23332 3333222221 123377888886642 10
Q ss_pred -c-cC-----cceeeeecC--CCceEEEEEEeCCCcchHHHHHHHHHh-CCCeEEE
Q 013722 101 -L-NS-----MRSSVGVVP--SKEYTSIELTGTDRPGLLSEVSAVLTD-LSCSVVS 146 (437)
Q Consensus 101 -~-~~-----~~r~v~~~~--~~~~t~i~v~~~DrpGLL~~I~~~l~~-~g~~I~~ 146 (437)
. .. .+.-|.-.. ...--.+.|.-|.|||=|.+++..|.. ++++-.+
T Consensus 416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~ 471 (521)
T PRK12483 416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFH 471 (521)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeee
Confidence 0 00 000111111 223446788889999999999999986 3555443
No 250
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.46 E-value=27 Score=25.37 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=27.6
Q ss_pred EEEEEeC---CCcchHHHHHHHHHHcCCeEEEEEeee
Q 013722 327 ELELYTD---DRFGLLSDITRILREYGLCIRRAEIST 360 (437)
Q Consensus 327 ~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~I~T 360 (437)
.|.+.+. ++||+++++...|++.|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566664 789999999999999999998875544
No 251
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.75 E-value=26 Score=24.54 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=29.2
Q ss_pred eCCCcchHHHHHHHHHHcCCeEEEEEeeecC-CeEEEEEEEE
Q 013722 332 TDDRFGLLSDITRILREYGLCIRRAEISTMG-RKVKDTFFVT 372 (437)
Q Consensus 332 ~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-~~a~D~F~v~ 372 (437)
.+|.||.++++.++|.++|++|........+ ++..=.|.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 4788999999999999999999886553222 1222356554
No 252
>PLN02550 threonine dehydratase
Probab=71.71 E-value=1.5e+02 Score=32.53 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=89.0
Q ss_pred eeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH------Hh
Q 013722 247 YTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGR-MEAYQEYYIKHVDGFPISSEAERQRVMACLEAA------IE 319 (437)
Q Consensus 247 ~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~-g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~------l~ 319 (437)
...+.|..|||||-|.+++..|... ||.+..-.... +.+.-.+.|... + .+..++|.+.|++. |.
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~-~-----~~~~~~i~~~l~~~g~~~~~l~ 488 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVH-T-----EQELQALKKRMESAQLRTVNLT 488 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeC-C-----HHHHHHHHHHHHHCCCCeEeCC
Confidence 3578899999999999999999986 88876543322 333222222222 2 23666777777663 10
Q ss_pred ---------hccC-------CCcEEEEEeCCCcchHHHHHHHHHH-cCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChH
Q 013722 320 ---------RRAS-------EGLELELYTDDRFGLLSDITRILRE-YGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPK 382 (437)
Q Consensus 320 ---------~~~~-------~~~~iev~~~DrpGLL~~I~~~l~~-~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~ 382 (437)
|-+. +.-.+.++=+.|||-|-++..+|.. .+|..++=+. -|+..-.+|.=.. +.++
T Consensus 489 ~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR~--~~~~~a~vlvGi~-----v~~~ 561 (591)
T PLN02550 489 SNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYRG--QGETGANVLVGIQ-----VPPE 561 (591)
T ss_pred CChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEeec--CCCCCccEEEEEe-----eCHH
Confidence 1111 1246889999999999999998887 4666665553 3444333554322 2235
Q ss_pred HHHHHHHHHhhccccccccC
Q 013722 383 IVDSIQHQIGRTILQVKGNL 402 (437)
Q Consensus 383 ~~~~l~~~L~~~~~~~~~~~ 402 (437)
+.+.+.+.|.+.-....|..
T Consensus 562 e~~~l~~~l~~~gy~~~dls 581 (591)
T PLN02550 562 EMQEFKSRANALGYEYQDEC 581 (591)
T ss_pred HHHHHHHHHHHcCCCeEECC
Confidence 67888888888666655443
No 253
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=71.39 E-value=11 Score=38.56 Aligned_cols=72 Identities=24% Similarity=0.437 Sum_probs=55.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhc--cccccccCCC
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRT--ILQVKGNLNT 404 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~--~~~~~~~~~~ 404 (437)
.|+|.+.||-||.-.+-..|...+|++..-.|.-.| .-|+-=+ .++.+..++|..+|+.+ +.+|.-+.|+
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~-----~IYln~p---~l~~~~fs~L~aei~~I~GV~~vr~V~~m 73 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG-----RIYLNFP---ELEFESFSSLMAEIRRIPGVTDVRTVPWM 73 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC-----eEEEecc---ccCHHHHHHHHHHHhcCCCccceeeecCC
Confidence 589999999999999999999999999999995544 2455222 34456677888888775 4577777888
Q ss_pred CC
Q 013722 405 PP 406 (437)
Q Consensus 405 ~~ 406 (437)
|+
T Consensus 74 Ps 75 (511)
T COG3283 74 PS 75 (511)
T ss_pred cc
Confidence 75
No 254
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=70.96 E-value=84 Score=36.04 Aligned_cols=102 Identities=10% Similarity=0.012 Sum_probs=62.2
Q ss_pred CCeeEEEEE---eCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh-
Q 013722 245 RDYTAVTIR---SKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER- 320 (437)
Q Consensus 245 ~~~t~V~V~---~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~- 320 (437)
.+-+.|+|. +.+.+|..+++...|++.++||..-. ..... .+|.+...+. ...+..++.+...|.+ +.+
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~---sse~s-is~~i~~~~~--~~~~~~~~~l~~~l~~-~~~i 392 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLIS---SSETN-VTVSLDPSEN--LVNTDVLAALSADLSQ-ICRV 392 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEEE---cCCCE-EEEEEccccc--cchHHHHHHHHHHHhh-cCcE
Confidence 345677774 45689999999999999999997652 22211 2344444321 1011133333333332 100
Q ss_pred cc-CCCcEEEEEeC---CCcchHHHHHHHHHHcCCeE
Q 013722 321 RA-SEGLELELYTD---DRFGLLSDITRILREYGLCI 353 (437)
Q Consensus 321 ~~-~~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I 353 (437)
.. ..-.+|.|.+. .+||+++++-.+|.+.||++
T Consensus 393 ~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 393 KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 01 12357888885 78999999999999987655
No 255
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=70.79 E-value=8.6 Score=26.78 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=26.0
Q ss_pred EEEEEeCC---CcchHHHHHHHHHHcCCeEEEEEe
Q 013722 327 ELELYTDD---RFGLLSDITRILREYGLCIRRAEI 358 (437)
Q Consensus 327 ~iev~~~D---rpGLL~~I~~~l~~~~i~I~~A~I 358 (437)
.|+|.+.+ .||.++++.++|.+++++|....-
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 45566555 899999999999999999987644
No 256
>PRK14636 hypothetical protein; Provisional
Probab=70.24 E-value=36 Score=31.14 Aligned_cols=93 Identities=9% Similarity=-0.010 Sum_probs=61.4
Q ss_pred CCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeCC
Q 013722 257 RPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--RASEGLELELYTDD 334 (437)
Q Consensus 257 rpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~~~~~~~iev~~~D 334 (437)
.+.+...+..++..+|+.+++..+...++..+-..+|..++|..+. -+.++.+-..|...|.. .++..|.+||+++.
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~-lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPG 82 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLV-IEDCAALSRRLSDVFDELDPIEDAYRLEVSSPG 82 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcC-HHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCC
Confidence 3445667778899999999999988876544446666655432232 24788888888888863 35678999999864
Q ss_pred CcchHHHHHHHHHHcC
Q 013722 335 RFGLLSDITRILREYG 350 (437)
Q Consensus 335 rpGLL~~I~~~l~~~~ 350 (437)
--.-|..--..-.-.|
T Consensus 83 ldRpL~~~~df~r~~G 98 (176)
T PRK14636 83 IDRPLTRPKDFADWAG 98 (176)
T ss_pred CCCCCCCHHHHHHhCC
Confidence 4444444433333333
No 257
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.74 E-value=43 Score=25.86 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=25.5
Q ss_pred EEEEE--E-eCCCccHHHHHHHHHHhCCceEEEE
Q 013722 28 TVIQV--D-SVNRHGILLEVIQFLVDLNLVITKA 58 (437)
Q Consensus 28 ~~I~V--~-~~DrpGLla~i~~~L~~~glnI~~A 58 (437)
+.|+| . .++.||+++++...|+++|+||.--
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 34555 2 5789999999999999999999854
No 258
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=69.47 E-value=33 Score=26.20 Aligned_cols=62 Identities=13% Similarity=0.255 Sum_probs=37.2
Q ss_pred EEEEE---eCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhh
Q 013722 29 VIQVD---SVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVET 96 (437)
Q Consensus 29 ~I~V~---~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 96 (437)
.|++. .++.+|+++++..+|++.|++|..- .+.+.. -.|.|.. .....++..+..|.+.|+.
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i--~~s~~~--is~~v~~--~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI--STSEVS--VSLTLDP--TKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE--EcCCcE--EEEEEEc--hhhccchHHHHHHHHHHHh
Confidence 45553 3678999999999999999999533 232222 2355533 2221212355566666655
No 259
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=69.12 E-value=34 Score=27.01 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=50.5
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec--CceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhhhcc
Q 013722 116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH--NARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNVLRT 190 (437)
Q Consensus 116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~aL~g 190 (437)
.+.+.+.+.++|+.|-++-++....|..+.....++. ++.+.-.|.|.. ..++ +.|...|.++.+-
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s---~R~~------~lL~~QLeKl~Dv 70 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS---DRSV------DLLTSQLEKLYDV 70 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC---CCCh------HHHHHHHHHHccc
Confidence 5789999999999999999999999999999888873 566666666654 2333 5666777665543
No 260
>PRK14646 hypothetical protein; Provisional
Probab=68.79 E-value=58 Score=29.09 Aligned_cols=92 Identities=15% Similarity=0.036 Sum_probs=63.7
Q ss_pred chHHHHHHHHHhCCCeEEEEEEEecCC-eEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHh--hccCCCcEEEEEeCCC
Q 013722 259 KLLFDTVCCLTDMQYVVYHGTVVTGRM-EAYQEYYIKHVDGFPISSEAERQRVMACLEAAIE--RRASEGLELELYTDDR 335 (437)
Q Consensus 259 gL~~~v~~~L~~~~lnI~~a~i~t~~g-~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~--~~~~~~~~iev~~~Dr 335 (437)
.+...+...+..+|+.+++......++ +.+ ..+|..++|..+. -+.++.+-+.+.+.|. -.++..|.+||+++.=
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~L-rV~IDk~~g~gVt-ldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl 85 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVI-KIIIKKTNGDDIS-LDDCALFNTPASEEIENSNLLNCSYVLEISSQGV 85 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCcc-HHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC
Confidence 355667788999999999999998765 555 5666666543332 3478888888888885 3457789999998755
Q ss_pred cchHHHHHHHHHHcCCe
Q 013722 336 FGLLSDITRILREYGLC 352 (437)
Q Consensus 336 pGLL~~I~~~l~~~~i~ 352 (437)
-.-|..--..-.-.|=.
T Consensus 86 dRpL~~~~df~r~~G~~ 102 (155)
T PRK14646 86 SDELTSERDFKTFKGFP 102 (155)
T ss_pred CCcCCCHHHHHHhCCCE
Confidence 55565555555554533
No 261
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.57 E-value=42 Score=24.24 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=27.8
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 118 SIELTGT---DRPGLLSEVSAVLTDLSCSVVSAEIWT 151 (437)
Q Consensus 118 ~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~i~T 151 (437)
.+++.|. +.+|+++++...|+++|+++.-....+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5666664 778999999999999999998775543
No 262
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=67.88 E-value=35 Score=26.06 Aligned_cols=57 Identities=7% Similarity=-0.061 Sum_probs=34.4
Q ss_pred eCCCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHH
Q 013722 254 SKDRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEA 316 (437)
Q Consensus 254 ~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~ 316 (437)
.++.+|+.+++..+|++.|++|..-. ..+.. -+|.+...+ ...+++.+..|++.|++
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~i~---~s~~~-is~~v~~~~--~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDLIS---TSEVS-VSLTLDPTK--NLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEE---cCCcE-EEEEEEchh--hccchHHHHHHHHHHHh
Confidence 46779999999999999999996542 22211 244444432 11112355555555554
No 263
>PRK11898 prephenate dehydratase; Provisional
Probab=67.64 E-value=27 Score=34.45 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=37.6
Q ss_pred eEEEEEEeCC-CcchHHHHHHHHHhCCCeEEEEEEEecC-ceeEEEEEEEe
Q 013722 116 YTSIELTGTD-RPGLLSEVSAVLTDLSCSVVSAEIWTHN-ARAAALLHVKD 164 (437)
Q Consensus 116 ~t~i~v~~~D-rpGLL~~I~~~l~~~g~~I~~A~i~T~~-~~~~d~F~V~~ 164 (437)
.+.+-+...+ +||-|+++-.+|+.+|+|+...+..-.. ....=.|||.-
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~ 246 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV 246 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE
Confidence 4556666654 6999999999999999999999887643 34455677765
No 264
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=67.59 E-value=14 Score=38.90 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=39.9
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE--EEEEEcCCCCC
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKD--TFFVTDASGNP 378 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D--~F~v~d~~g~~ 378 (437)
+.|-+...|+||-|+++-++|+++|||+..-.-.....+..+ .|||. .+|..
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD-~Eg~~ 85 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVD-VELFH 85 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEE-EEcCH
Confidence 456666689999999999999999999998777766555444 67784 34543
No 265
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=67.37 E-value=22 Score=30.84 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=45.4
Q ss_pred CCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe-cCceeEEEEEEEe
Q 013722 112 PSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT-HNARAAALLHVKD 164 (437)
Q Consensus 112 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T-~~~~~~d~F~V~~ 164 (437)
....-..+.+.-.||.|.|+++-.++++.++||...+-+- .+|+|.-+..+..
T Consensus 68 ~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 68 LKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred ccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 3446677888899999999999999999999999988765 7888888887766
No 266
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=67.29 E-value=18 Score=38.86 Aligned_cols=36 Identities=31% Similarity=0.600 Sum_probs=33.5
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG 362 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g 362 (437)
.++|.+.||.|+..+|...|..++|++..-.|.+.|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 589999999999999999999999999999997764
No 267
>PRK14634 hypothetical protein; Provisional
Probab=67.11 E-value=60 Score=28.99 Aligned_cols=92 Identities=17% Similarity=0.079 Sum_probs=61.6
Q ss_pred CchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeCCC
Q 013722 258 PKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--RASEGLELELYTDDR 335 (437)
Q Consensus 258 pgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~~~~~~~iev~~~Dr 335 (437)
..+...+...+..+|+.+++..+...++..+-..+|..++|..+. -+.++.+-..|.+.|.. .++..|.+||+++.-
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 85 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVS-LDDCAGFSGPMGEALEASQLLTEAYVLEISSPGI 85 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCccc-HHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCC
Confidence 345566777889999999999998876533346667767774332 24788888888888863 346789999998643
Q ss_pred cchHHHHHHHHHHcC
Q 013722 336 FGLLSDITRILREYG 350 (437)
Q Consensus 336 pGLL~~I~~~l~~~~ 350 (437)
-.=|..-...-.-.|
T Consensus 86 dRpL~~~~~f~r~~G 100 (155)
T PRK14634 86 GDQLSSDRDFQTFRG 100 (155)
T ss_pred CCcCCCHHHHHHhCC
Confidence 333444444433333
No 268
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=66.20 E-value=20 Score=37.49 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=39.4
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeE-EEEEEEEcCCCCC
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKV-KDTFFVTDASGNP 378 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a-~D~F~v~d~~g~~ 378 (437)
+.|-+...|+||-|+++-++|+++|||+.+-.-.....+. +=.|||. .+|..
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD-~eg~~ 69 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVE-FDEAS 69 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEE-EecCc
Confidence 4666777999999999999999999999987776554333 3478884 45654
No 269
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.92 E-value=29 Score=27.18 Aligned_cols=57 Identities=12% Similarity=0.285 Sum_probs=36.4
Q ss_pred CCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCC--hHHHHHHHHHHhh
Q 013722 333 DDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVD--PKIVDSIQHQIGR 393 (437)
Q Consensus 333 ~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~--~~~~~~l~~~L~~ 393 (437)
++.||++++|-++|+++||+|..- .| ++ ..=.|.|...+...+. .+..++|.++|.+
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI--~q-s~-~sISftV~~sd~~~~~~~~~~l~~~~~~~~~ 70 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVV--AT-SE-VSISLTLDPSKLWSRELIQQELDHVVEELEK 70 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEE--Ee-cC-CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence 688999999999999999999986 33 33 2236766543221111 1244566666654
No 270
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.88 E-value=50 Score=23.83 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=28.0
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 118 SIELTGT---DRPGLLSEVSAVLTDLSCSVVSAEIWT 151 (437)
Q Consensus 118 ~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~i~T 151 (437)
.+++.|. ++||+++++..+|+..|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4667764 789999999999999999998776543
No 271
>PRK08841 aspartate kinase; Validated
Probab=64.70 E-value=78 Score=32.71 Aligned_cols=94 Identities=13% Similarity=0.201 Sum_probs=59.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCcc
Q 013722 26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMR 105 (437)
Q Consensus 26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~ 105 (437)
+.+.|++.+ +.++++.+.|+++|+++..- .+....+ .|.|.. ...+.++..+.+
T Consensus 257 ~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i--~~~~~~~--~~~v~~---------~~~~~~~~~~~~--------- 310 (392)
T PRK08841 257 DLALIEVES----ESLPSLTKQCQMLGIEVWNV--IEEADRA--QIVIKQ---------DACAKLKLVFDD--------- 310 (392)
T ss_pred CeEEEEecc----chHHHHHHHHHHcCCCEEEE--EecCCcE--EEEECH---------HHHHHHHHhCcc---------
Confidence 445566643 35789999999999888733 2222111 255521 122333322211
Q ss_pred eeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEE
Q 013722 106 SSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAE 148 (437)
Q Consensus 106 r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~ 148 (437)
.+. ...+...+++.|...||+.+++..+|.+.|+||....
T Consensus 311 -~i~--~~~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 311 -KIR--NSESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred -cEE--EeCCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 111 1235778999999999999999999999999995544
No 272
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.53 E-value=51 Score=23.76 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=31.4
Q ss_pred EEEEEeC---CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722 327 ELELYTD---DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT 372 (437)
Q Consensus 327 ~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~ 372 (437)
.|.+.+. +.||+++++-+.|++.|+++...-.++.+ ..=.|.+.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~ 49 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVA 49 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEe
Confidence 4556653 77999999999999999999877654422 22236664
No 273
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=64.07 E-value=14 Score=25.65 Aligned_cols=33 Identities=15% Similarity=0.314 Sum_probs=26.5
Q ss_pred EEEEEeCC---CcchHHHHHHHHHhCCCeEEEEEEE
Q 013722 118 SIELTGTD---RPGLLSEVSAVLTDLSCSVVSAEIW 150 (437)
Q Consensus 118 ~i~v~~~D---rpGLL~~I~~~l~~~g~~I~~A~i~ 150 (437)
.+++.+.+ .+|.++++..+|++++++|......
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 35566554 8999999999999999999876543
No 274
>PRK09224 threonine dehydratase; Reviewed
Probab=64.02 E-value=2.1e+02 Score=30.65 Aligned_cols=142 Identities=13% Similarity=0.018 Sum_probs=84.6
Q ss_pred CCeeEEEEEeCCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH-Hh---
Q 013722 245 RDYTAVTIRSKDRPKLLFDTVCCLTDMQYVVYHGTVVTGR-MEAYQEYYIKHVDGFPISSEAERQRVMACLEAA-IE--- 319 (437)
Q Consensus 245 ~~~t~V~V~~~DrpgL~~~v~~~L~~~~lnI~~a~i~t~~-g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~-l~--- 319 (437)
..-..+.|.-|||||-|.+++..|. +.||...+-...+ +.+- .|+..+..+. +...+.|.+.|++. +.
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~-V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ 398 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAH-IFVGVQLSRG----QEERAEIIAQLRAHGYPVVD 398 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEE-EEEEEEeCCh----hhHHHHHHHHHHHcCCCeEE
Confidence 3455888999999999999999999 6788876443332 3332 3333232221 22366777777663 10
Q ss_pred -----------h-----ccC---CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCC
Q 013722 320 -----------R-----RAS---EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVD 380 (437)
Q Consensus 320 -----------~-----~~~---~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~ 380 (437)
| +.+ ..-.+.+.=+.|||=|-++..+|. -+-||...+-.-.|...--++.-. .+.
T Consensus 399 ls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr~~~~~~g~vlvgi-----~~~ 472 (504)
T PRK09224 399 LSDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYRNHGADYGRVLAGF-----QVP 472 (504)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEccCCcccccEEEEE-----ecC
Confidence 0 111 134789999999999999988776 667887777643332211122111 111
Q ss_pred hHHHHHHHHHHhhcccccc
Q 013722 381 PKIVDSIQHQIGRTILQVK 399 (437)
Q Consensus 381 ~~~~~~l~~~L~~~~~~~~ 399 (437)
+.+.+++.+.|.+.-....
T Consensus 473 ~~~~~~~~~~l~~~~~~~~ 491 (504)
T PRK09224 473 DADEPEFEAFLDELGYPYW 491 (504)
T ss_pred hhhHHHHHHHHHHcCCCeE
Confidence 2245677777766444433
No 275
>PRK08526 threonine dehydratase; Provisional
Probab=63.89 E-value=1.2e+02 Score=31.55 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=49.8
Q ss_pred CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecC-----CeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722 324 EGLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMG-----RKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV 398 (437)
Q Consensus 324 ~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g-----~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~ 398 (437)
|...+.|.-+||||-|.+++..+.+.+.||....-.... ..+.=.+-+.. . +++..++|.+.|.+.-+.+
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~-~----~~~~~~~~~~~l~~~g~~~ 399 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET-K----GKEHQEEIRKILTEKGFNF 399 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe-C----CHHHHHHHHHHHHHCCCCe
Confidence 356899999999999999999999999999876654432 22222222321 1 3467788989888765554
Q ss_pred c
Q 013722 399 K 399 (437)
Q Consensus 399 ~ 399 (437)
.
T Consensus 400 ~ 400 (403)
T PRK08526 400 Y 400 (403)
T ss_pred E
Confidence 4
No 276
>PRK14645 hypothetical protein; Provisional
Probab=63.84 E-value=71 Score=28.53 Aligned_cols=92 Identities=21% Similarity=0.165 Sum_probs=62.4
Q ss_pred CchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeCCC
Q 013722 258 PKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--RASEGLELELYTDDR 335 (437)
Q Consensus 258 pgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~~~~~~~iev~~~Dr 335 (437)
..+...+...+..+|+.+++..+...++..+-..+|..++|..+. -+.++.+-+.|.+.|.. .++..|.+||+++.-
T Consensus 9 ~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 87 (154)
T PRK14645 9 PDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVT-VEDLERASRALEAELDRLDPIEGEYRLEVESPGP 87 (154)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcC-HHHHHHHHHHHHHHhcccccCCCceEEEEeCCCC
Confidence 346666778899999999999998876533345556554443333 23788888888888863 346789999998654
Q ss_pred cchHHHHHHHHHHcC
Q 013722 336 FGLLSDITRILREYG 350 (437)
Q Consensus 336 pGLL~~I~~~l~~~~ 350 (437)
-.-|...-..-.-.|
T Consensus 88 dRpL~~~~df~r~~G 102 (154)
T PRK14645 88 KRPLFTARHFERFAG 102 (154)
T ss_pred CCCCCCHHHHHHhCC
Confidence 444555555555555
No 277
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.43 E-value=58 Score=24.05 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=27.0
Q ss_pred EEEEEeC--CCcchHHHHHHHHHHcCCeEEEEEeeec
Q 013722 327 ELELYTD--DRFGLLSDITRILREYGLCIRRAEISTM 361 (437)
Q Consensus 327 ~iev~~~--DrpGLL~~I~~~l~~~~i~I~~A~I~T~ 361 (437)
+|.+.+. ..||+++++-.+|.+.|++|......|-
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 4555554 4589999999999999999987665443
No 278
>PLN02550 threonine dehydratase
Probab=63.30 E-value=2.3e+02 Score=31.00 Aligned_cols=115 Identities=11% Similarity=0.111 Sum_probs=69.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhcc-C---c
Q 013722 26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNA-S---F 100 (437)
Q Consensus 26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~-~---~ 100 (437)
....+.|.-|||||-|.+++.+|... ||.+-.-.- ..+.+.-.+.|. -. +++..+.|.++|.+.. . +
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie-~~-----~~~~~~~i~~~l~~~g~~~~~l 487 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVG-VH-----TEQELQALKKRMESAQLRTVNL 487 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEE-eC-----CHHHHHHHHHHHHHCCCCeEeC
Confidence 34679999999999999999999986 777665543 223332223332 22 2356677888887652 1 0
Q ss_pred cc-----Ccceeee-e-cCCCceEEEEEEeCCCcchHHHHHHHHHh-CCCeEEEEE
Q 013722 101 LN-----SMRSSVG-V-VPSKEYTSIELTGTDRPGLLSEVSAVLTD-LSCSVVSAE 148 (437)
Q Consensus 101 ~~-----~~~r~v~-~-~~~~~~t~i~v~~~DrpGLL~~I~~~l~~-~g~~I~~A~ 148 (437)
.. ..-|-+. - ..-..--.+.+.-+.|||-|.++..+|.. .+|+-.+=+
T Consensus 488 ~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR 543 (591)
T PLN02550 488 TSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYR 543 (591)
T ss_pred CCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEee
Confidence 00 0001111 0 11123446788889999999999998875 244444333
No 279
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.67 E-value=60 Score=23.97 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=27.1
Q ss_pred EEEEEeC--CCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 118 SIELTGT--DRPGLLSEVSAVLTDLSCSVVSAEIWT 151 (437)
Q Consensus 118 ~i~v~~~--DrpGLL~~I~~~l~~~g~~I~~A~i~T 151 (437)
.|.+.|. ..+|+++++..+|++.|++|......+
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566664 468999999999999999998766444
No 280
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=62.58 E-value=63 Score=25.57 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=40.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE--eCCEEEEEEEE
Q 013722 27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS--DGGYLMDVFYV 73 (437)
Q Consensus 27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V 73 (437)
.+.+.+.+.++|+.+.++.++....|+.|..-..++ ++|.+--.|.|
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 468899999999999999999999999999888876 46666555777
No 281
>PRK09224 threonine dehydratase; Reviewed
Probab=62.13 E-value=1.4e+02 Score=32.03 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=71.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeC-CEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhcc-Cc---
Q 013722 26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDG-GYLMDVFYVTDINGQKIGDQATISYIKTTVETNA-SF--- 100 (437)
Q Consensus 26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~-g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~-~~--- 100 (437)
.-..+.|.-|||||-|.+++.+|. +.||..-+-.-.+ +.+ .+|+...-.+. ++-.+.|.+.|.+.. .+
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a-~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l 399 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEA-HIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL 399 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeE-EEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence 467899999999999999999999 6788765554322 332 23433332221 122567788886642 10
Q ss_pred c------cCcceeeee-c-CCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722 101 L------NSMRSSVGV-V-PSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW 150 (437)
Q Consensus 101 ~------~~~~r~v~~-~-~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~ 150 (437)
. ...+--|.- . ....-..+.+.=|.|||-|.+...+|. -+.||..-+=.
T Consensus 400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 0 000001111 1 112345678888999999999988776 67788777664
No 282
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.97 E-value=54 Score=25.26 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=37.4
Q ss_pred CCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722 124 TDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN 186 (437)
Q Consensus 124 ~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (437)
++.||++++|..+|+++|+||...- + +. ..-.|.|... ...+ +++.++.+.++|.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~--~~~~-~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPD--PNGL-DPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCc--cccc-chHHHHHHHHHHHh
Confidence 5789999999999999999998874 2 22 3344455441 1113 23366777777765
No 283
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.95 E-value=49 Score=23.50 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=25.4
Q ss_pred EEEEEe---CCCcchHHHHHHHHHHcCCeEEEEE
Q 013722 327 ELELYT---DDRFGLLSDITRILREYGLCIRRAE 357 (437)
Q Consensus 327 ~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A~ 357 (437)
.|+|.+ .+.||+++++..+|.++|+++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355654 4679999999999999999997764
No 284
>PLN02317 arogenate dehydratase
Probab=61.13 E-value=47 Score=34.19 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=32.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec
Q 013722 116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH 152 (437)
Q Consensus 116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~ 152 (437)
.|.|.+.-.|+||-|+++-.+|+.+|+|+...+....
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~ 319 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQ 319 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeec
Confidence 4777777799999999999999999999999887653
No 285
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=58.17 E-value=87 Score=36.27 Aligned_cols=69 Identities=6% Similarity=0.080 Sum_probs=52.5
Q ss_pred ccCCCEEEEeeCC-CCCeEEEEE---EeCCCccHHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEeCCCC
Q 013722 11 RMNPPRVVIDNDV-CEHATVIQV---DSVNRHGILLEVIQFLVDLNLVITKAYISSD-GGYLMDVFYVTDINGQ 79 (437)
Q Consensus 11 ~~~~~~V~v~~~~-~~~~~~I~V---~~~DrpGLla~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~ 79 (437)
+..+|.+.+.... +.....+.+ ..+...|+|+.++.++..+||.+..+.+-+. +|..+-+|||....+.
T Consensus 213 ~~~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 213 SSVGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred hcCCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 3567888877665 223334444 3566788999999999999999999999884 7878889999876554
No 286
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=57.83 E-value=63 Score=22.66 Aligned_cols=32 Identities=13% Similarity=0.382 Sum_probs=26.4
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCCeEEEEEE
Q 013722 118 SIELTGT---DRPGLLSEVSAVLTDLSCSVVSAEI 149 (437)
Q Consensus 118 ~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~i 149 (437)
.|++.+. +++|+++++..+|+++++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4666554 8899999999999999999976654
No 287
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.79 E-value=61 Score=23.85 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=34.6
Q ss_pred EEEEEeC---CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEE-EEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013722 327 ELELYTD---DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDT-FFVTDASGNPVDPKIVDSIQHQIGRTI 395 (437)
Q Consensus 327 ~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~-F~v~d~~g~~l~~~~~~~l~~~L~~~~ 395 (437)
+|.+.+. +.||+++++.++|.+.++++.+ .|.....+ |.|.+ ++.++.-+.|.+.+
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~-----~~~s~~~is~vv~~--------~d~~~av~~LH~~f 61 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLVS-----QAANDLNLTFVVDE--------DQADGLCARLHFQL 61 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEEE-----EeCCCCeEEEEEeH--------HHHHHHHHHHHHHH
Confidence 4566664 6799999999999998777632 22233333 65532 34455555565544
No 288
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=57.75 E-value=59 Score=24.94 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=36.7
Q ss_pred CCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013722 333 DDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGR 393 (437)
Q Consensus 333 ~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~ 393 (437)
...||++++|-++|+++|+|+..-- + ++ ..=.|.|.. . .+.++..++|.++|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~~--~-~~~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALHM--E-NAEDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeh--h-hcChHHHHHHHHHHHH
Confidence 3569999999999999999998863 3 33 222555543 1 2233356677777776
No 289
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=57.56 E-value=47 Score=24.77 Aligned_cols=32 Identities=19% Similarity=0.086 Sum_probs=24.7
Q ss_pred EEEEEeC--CCcchHHHHHHHHHHcCCeEEEEEe
Q 013722 327 ELELYTD--DRFGLLSDITRILREYGLCIRRAEI 358 (437)
Q Consensus 327 ~iev~~~--DrpGLL~~I~~~l~~~~i~I~~A~I 358 (437)
+|.+.+. -+||+++++.++|.+.|+++...-.
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~ 37 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQ 37 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEe
Confidence 3444443 2689999999999999999976554
No 290
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=56.78 E-value=22 Score=25.22 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=26.2
Q ss_pred EEEEEeC---CCcchHHHHHHHHHHcCCeEEEEEe
Q 013722 327 ELELYTD---DRFGLLSDITRILREYGLCIRRAEI 358 (437)
Q Consensus 327 ~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~I 358 (437)
.|++.+. +++|+++++..+|.++++++...-.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4666554 8899999999999999999976544
No 291
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=56.30 E-value=4.7e+02 Score=32.21 Aligned_cols=180 Identities=13% Similarity=0.098 Sum_probs=112.0
Q ss_pred cCCCEEEEeeCCCCCeEEEEEEeCC---CccHHHHHHHHHHhC-CceEEEEEE-EEeCCEEEEEEEEEeCCCCC--CCcH
Q 013722 12 MNPPRVVIDNDVCEHATVIQVDSVN---RHGILLEVIQFLVDL-NLVITKAYI-SSDGGYLMDVFYVTDINGQK--IGDQ 84 (437)
Q Consensus 12 ~~~~~V~v~~~~~~~~~~I~V~~~D---rpGLla~i~~~L~~~-glnI~~A~I-~t~~g~~~d~F~V~~~~g~~--~~~~ 84 (437)
...+.+.++......+.-+.|+.|- -+.+-.+|...|.+. +....+-+. .+.+..+---|++....+.. ++..
T Consensus 326 r~rvRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~d~~ 405 (1528)
T PF05088_consen 326 RRRVRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDIDVE 405 (1528)
T ss_pred CCceeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCCCHH
Confidence 4467888888888888877777664 345778888887764 334444443 34556666667776666654 2221
Q ss_pred HHHHHHHH-----------HHhhccC--------------ccc------Cc-----------------ceeeee----cC
Q 013722 85 ATISYIKT-----------TVETNAS--------------FLN------SM-----------------RSSVGV----VP 112 (437)
Q Consensus 85 ~~~~~l~~-----------~L~~~~~--------------~~~------~~-----------------~r~v~~----~~ 112 (437)
...+.|.+ +|..... +|. ++ +..+.+ ..
T Consensus 406 ~le~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~ 485 (1528)
T PF05088_consen 406 ALEARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGA 485 (1528)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCC
Confidence 12122211 2221100 110 00 011222 23
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe--c-Cc--eeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhhh
Q 013722 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT--H-NA--RAAALLHVKDQSSGCAIEDQKRLLKIKKLLCNV 187 (437)
Q Consensus 113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T--~-~~--~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~a 187 (437)
......+.+....+|..|++|.-+|..+|+.|.+.+-+. . ++ ....-|.+..+ .+......+..+.++++|..+
T Consensus 486 ~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-~~~~~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 486 GPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP-DGDALDLDDIRERFEEAFEAV 564 (1528)
T ss_pred CCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC-CCccccHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999988765 2 22 25667788774 454443455667888888888
Q ss_pred hccCC
Q 013722 188 LRTNG 192 (437)
Q Consensus 188 L~g~~ 192 (437)
..|..
T Consensus 565 ~~g~~ 569 (1528)
T PF05088_consen 565 WNGRA 569 (1528)
T ss_pred hcCCC
Confidence 88864
No 292
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=55.49 E-value=35 Score=35.95 Aligned_cols=52 Identities=17% Similarity=0.115 Sum_probs=40.7
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCce-eE-EEEEEEe
Q 013722 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNAR-AA-ALLHVKD 164 (437)
Q Consensus 113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~-~~-d~F~V~~ 164 (437)
....+.|-+..+|+||-|+++-.+|+.+|+|+...+....... .. =.|+|.-
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 3355677777799999999999999999999999887764433 33 4677776
No 293
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=55.42 E-value=72 Score=33.45 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=39.9
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec-CceeEEEEEEEe
Q 013722 116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH-NARAAALLHVKD 164 (437)
Q Consensus 116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~-~~~~~d~F~V~~ 164 (437)
.+.|-+..+|+||-|+++-.+|+.+|+|+...+.... +....=.|+|.-
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~ 65 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF 65 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE
Confidence 5677777899999999999999999999999887653 333455778876
No 294
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=53.77 E-value=2.6e+02 Score=28.99 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=43.4
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE-ecC-ceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722 114 KEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW-THN-ARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN 186 (437)
Q Consensus 114 ~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~-T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (437)
.....+.+.-+||||-|.+++..+...+.||...+-. ..+ +.+.-.+-+..+ ++++.+.+.+.|.+
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~-------~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELN-------DKEDFAGLLERMAA 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 3567889999999999999999777777799966654 222 222222333331 35566777766654
No 295
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=53.66 E-value=82 Score=23.89 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=27.0
Q ss_pred EEEEEe---CCCcchHHHHHHHHHHcCCeEEEEEeee
Q 013722 327 ELELYT---DDRFGLLSDITRILREYGLCIRRAEIST 360 (437)
Q Consensus 327 ~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A~I~T 360 (437)
.|++.+ .+.+|+++++.++|+++++++..---++
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 456643 4789999999999999999998765543
No 296
>PRK14647 hypothetical protein; Provisional
Probab=53.43 E-value=1.4e+02 Score=26.65 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeCCCcc
Q 013722 260 LLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--RASEGLELELYTDDRFG 337 (437)
Q Consensus 260 L~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~~~~~~~iev~~~DrpG 337 (437)
+-..+..++..+|+.+.+..+...++..+-..+|..+.|-.+ +.++.+-..+.+.|.. .++..|.+||+++.--.
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~gvsl---ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~R 86 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKEGGVNL---DDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDR 86 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCCCCH---HHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCC
Confidence 344556778899999999999987653334556665556433 4788888888888863 35678999999875433
Q ss_pred hHHHHHHHHHHcC
Q 013722 338 LLSDITRILREYG 350 (437)
Q Consensus 338 LL~~I~~~l~~~~ 350 (437)
-|...-..-.-.|
T Consensus 87 pL~~~~~f~r~~G 99 (159)
T PRK14647 87 PLKKEADYERYAG 99 (159)
T ss_pred cCCCHHHHHHhCC
Confidence 3444444444434
No 297
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=53.42 E-value=35 Score=36.58 Aligned_cols=35 Identities=29% Similarity=0.229 Sum_probs=32.6
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEec
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTH 152 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~ 152 (437)
.++|.|.||.|+..+|...|..+++|+...+|...
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~ 36 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI 36 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence 47899999999999999999999999999999764
No 298
>PRK14637 hypothetical protein; Provisional
Probab=53.35 E-value=1.6e+02 Score=26.10 Aligned_cols=91 Identities=10% Similarity=0.010 Sum_probs=60.2
Q ss_pred CCCchHHHHHHHHHhCCCeEEEEEEEecCC-eEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhhcc-CCCcEEEEEeC
Q 013722 256 DRPKLLFDTVCCLTDMQYVVYHGTVVTGRM-EAYQEYYIKHVDGFPISSEAERQRVMACLEAAIERRA-SEGLELELYTD 333 (437)
Q Consensus 256 DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g-~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~-~~~~~iev~~~ 333 (437)
.--|-+..+..++..+|+.+.+.++...++ +.+ ..+|..++|-. -+.++.+-+.|...|..-. +..+.+||+++
T Consensus 6 ~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~l-rV~ID~~~gV~---iddC~~vSr~Is~~LD~~~~~~~y~LEVSSP 81 (151)
T PRK14637 6 KDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRV-RAVIYSAGGVG---LDDCARVHRILVPRLEALGGVRDVFLEVSSP 81 (151)
T ss_pred ccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEE-EEEEECCCCCC---HHHHHHHHHHHHHHhcccccccCcEEEEeCC
Confidence 345777888899999999999999998765 555 55555555532 3468888787777775432 35689999986
Q ss_pred CCcchHHHHHHHHHHcC
Q 013722 334 DRFGLLSDITRILREYG 350 (437)
Q Consensus 334 DrpGLL~~I~~~l~~~~ 350 (437)
.--.=|...-..-.-.|
T Consensus 82 GldRpL~~~~~f~r~~G 98 (151)
T PRK14637 82 GIERVIKNAAEFSIFVG 98 (151)
T ss_pred CCCCCCCCHHHHHHhCC
Confidence 44333444444433333
No 299
>PRK05925 aspartate kinase; Provisional
Probab=52.99 E-value=1.7e+02 Score=30.74 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=62.2
Q ss_pred CeEEEEEEeC-CCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCc
Q 013722 26 HATVIQVDSV-NRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSM 104 (437)
Q Consensus 26 ~~~~I~V~~~-DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~ 104 (437)
+.+.|++.+. ..+|.++++...|+++|++|.-.. ++.. --.|.+...+ .. ...++.|...|....
T Consensus 299 ~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i~-s~~~---sis~~i~~~~---~~-~~~~~~l~~~l~~~~------ 364 (440)
T PRK05925 299 NQALWSVDYNSLGLVRLEDVLGILRSLGIVPGLVM-AQNL---GVYFTIDDDD---IS-EEYPQHLTDALSAFG------ 364 (440)
T ss_pred CEEEEEEecCCcchhHHHHHHHHHHHcCCcEEEEe-ccCC---EEEEEEechh---cc-HHHHHHHHHHhcCCc------
Confidence 4455666432 257789999999999999996331 2211 1236664321 11 123333443333211
Q ss_pred ceeeeecCCCceEEEEEEeC--CCcchHHHHHHHHHhCCCeEEE
Q 013722 105 RSSVGVVPSKEYTSIELTGT--DRPGLLSEVSAVLTDLSCSVVS 146 (437)
Q Consensus 105 ~r~v~~~~~~~~t~i~v~~~--DrpGLL~~I~~~l~~~g~~I~~ 146 (437)
.+. -..+...|+|+|. -.+|+.+++..+|++.|+||..
T Consensus 365 --~i~--~~~~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~ 404 (440)
T PRK05925 365 --TVS--CEGPLALITMIGAKLASWKVVRTFTEKLRGYQTPVFC 404 (440)
T ss_pred --eEE--EECCEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEE
Confidence 121 2235778888875 2378999999999999999965
No 300
>PRK14634 hypothetical protein; Provisional
Probab=51.85 E-value=1.2e+02 Score=27.09 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccccCCCCC-----CCCCCC
Q 013722 338 LLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPP-----KLPQEP 412 (437)
Q Consensus 338 LL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~-----~~~~~~ 412 (437)
+-.-+..++.++|+.+....+...|....=..||...+|..++=++++++.++|.+ +|++.|.- +.+ +||+.+
T Consensus 9 i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~-~LD~~d~i-~~~Y~LEVSSPGld 86 (155)
T PRK14634 9 LETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGE-ALEASQLL-TEAYVLEISSPGIG 86 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHH-HhcccccC-CCCeEEEEeCCCCC
Confidence 34456677889999999999988766554466676556766777789999999988 66765532 212 277788
Q ss_pred Cccccccccc
Q 013722 413 ARSFFFTNFF 422 (437)
Q Consensus 413 ~~~~~~~~~~ 422 (437)
++.+..--+.
T Consensus 87 RpL~~~~~f~ 96 (155)
T PRK14634 87 DQLSSDRDFQ 96 (155)
T ss_pred CcCCCHHHHH
Confidence 8877654443
No 301
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=51.64 E-value=1.5e+02 Score=26.19 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeCCCcc
Q 013722 260 LLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--RASEGLELELYTDDRFG 337 (437)
Q Consensus 260 L~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~~~~~~~iev~~~DrpG 337 (437)
+-..+...+..+|+.+.+..+...++..+-..+|..++|- +-+.++.+-+.+.+.|.. .++..|.+||+++.--.
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv---~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~R 85 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGI---DLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDR 85 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCC---CHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCC
Confidence 3445667889999999999999876533445555555553 335788888888888863 34578999999864433
Q ss_pred hHHHHHHHHHHcC
Q 013722 338 LLSDITRILREYG 350 (437)
Q Consensus 338 LL~~I~~~l~~~~ 350 (437)
-|...-..-.-.|
T Consensus 86 pL~~~~~f~r~~G 98 (154)
T PRK00092 86 PLKKARDFRRFIG 98 (154)
T ss_pred cCCCHHHHHHhCC
Confidence 3433333333333
No 302
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.29 E-value=96 Score=22.79 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=22.5
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCCeE
Q 013722 118 SIELTGT---DRPGLLSEVSAVLTDLSCSV 144 (437)
Q Consensus 118 ~i~v~~~---DrpGLL~~I~~~l~~~g~~I 144 (437)
.|++.|. +.||+++++.++|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4677775 67999999999999987776
No 303
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=50.25 E-value=93 Score=22.34 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=27.4
Q ss_pred CCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEe
Q 013722 124 TDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKD 164 (437)
Q Consensus 124 ~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~ 164 (437)
.+++|+.++|..+|+++|+++.... | ++ ..-.|.+..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence 4779999999999999999998873 3 22 334455544
No 304
>PRK08639 threonine dehydratase; Validated
Probab=50.22 E-value=1e+02 Score=32.11 Aligned_cols=69 Identities=14% Similarity=0.094 Sum_probs=43.9
Q ss_pred CCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722 113 SKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN 186 (437)
Q Consensus 113 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (437)
+.....+.+.-+||||-|.++...+...+.||...+-....+.......|.-. ..++++.+++.+.|.+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE-----~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE-----LKDAEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence 45677899999999999999999666666699887654211211112222221 1145667777777664
No 305
>PRK14639 hypothetical protein; Provisional
Probab=49.28 E-value=1.7e+02 Score=25.64 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=58.2
Q ss_pred HHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeCCCcchHHHH
Q 013722 265 VCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--RASEGLELELYTDDRFGLLSDI 342 (437)
Q Consensus 265 ~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~~~~~~~iev~~~DrpGLL~~I 342 (437)
.-++..+|+.+.+......++..+-..+|..+.|-. -+.++.+-+.|.+.|.. ..+..|.+||+++.--.-|...
T Consensus 4 ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gv~---iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~ 80 (140)
T PRK14639 4 EALCKECGVSFYDDELVSENGRKIYRVYITKEGGVN---LDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKI 80 (140)
T ss_pred hHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCCCC---HHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCCH
Confidence 346788999999999988766444466666555532 34788888888888863 3467899999986544445555
Q ss_pred HHHHHHcCCeE
Q 013722 343 TRILREYGLCI 353 (437)
Q Consensus 343 ~~~l~~~~i~I 353 (437)
-..-.-.|-.|
T Consensus 81 ~~f~r~~G~~v 91 (140)
T PRK14639 81 EHFAKSIGELV 91 (140)
T ss_pred HHHHHhCCCEE
Confidence 55444444433
No 306
>PRK14640 hypothetical protein; Provisional
Probab=49.00 E-value=1.9e+02 Score=25.62 Aligned_cols=90 Identities=12% Similarity=0.067 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeCCCcc
Q 013722 260 LLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--RASEGLELELYTDDRFG 337 (437)
Q Consensus 260 L~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~~~~~~~iev~~~DrpG 337 (437)
+...+...+..+|+.+.+......++.-+-..+|..++|-. -+.++.+-+.|...|.. .++..|.+||+++.--.
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~---lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~R 84 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVS---VENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDR 84 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCC---HHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 44456678889999999999988764333466666666632 34788888888888863 34678999999875544
Q ss_pred hHHHHHHHHHHcCCe
Q 013722 338 LLSDITRILREYGLC 352 (437)
Q Consensus 338 LL~~I~~~l~~~~i~ 352 (437)
-|......-.-.|=.
T Consensus 85 pL~~~~~f~r~~G~~ 99 (152)
T PRK14640 85 PLFKVAQFEKYVGQE 99 (152)
T ss_pred cCCCHHHHHHhCCCe
Confidence 455555555555543
No 307
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.00 E-value=96 Score=21.86 Aligned_cols=31 Identities=13% Similarity=0.376 Sum_probs=25.5
Q ss_pred EEEEEe---CCCcchHHHHHHHHHhCCCeEEEEE
Q 013722 118 SIELTG---TDRPGLLSEVSAVLTDLSCSVVSAE 148 (437)
Q Consensus 118 ~i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~ 148 (437)
.|++.+ .+.||+++++..+|+++++++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355654 4779999999999999999997765
No 308
>PRK00907 hypothetical protein; Provisional
Probab=47.91 E-value=68 Score=26.08 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=49.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE----EeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhc
Q 013722 27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYIS----SDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETN 97 (437)
Q Consensus 27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~----t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 97 (437)
.+-+.|.+.+.+++...+..++..+.-......+. +.|.|..-++.|.- .+.+.++.|-++|...
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a------ts~eQld~iY~~L~~~ 85 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA------ESREQYDAAHQALRDH 85 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhhC
Confidence 47899999999999999999999998776666664 35556655555542 3346778888888764
No 309
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=46.94 E-value=1e+02 Score=21.77 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=25.4
Q ss_pred EEEEEe---CCCcchHHHHHHHHHHcCCeEEEEE
Q 013722 327 ELELYT---DDRFGLLSDITRILREYGLCIRRAE 357 (437)
Q Consensus 327 ~iev~~---~DrpGLL~~I~~~l~~~~i~I~~A~ 357 (437)
.|.|.+ .+.||+++++...|.+.|+++....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 355554 4779999999999999999997765
No 310
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.03 E-value=1.1e+02 Score=22.19 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=32.4
Q ss_pred EEEEEeC---CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEE-EEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013722 327 ELELYTD---DRFGLLSDITRILREYGLCIRRAEISTMGRKVKD-TFFVTDASGNPVDPKIVDSIQHQIGRT 394 (437)
Q Consensus 327 ~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D-~F~v~d~~g~~l~~~~~~~l~~~L~~~ 394 (437)
.|.+.+. ++||+++++..+|.+ ++|.. -+.|..... .|.|.+ ++.+++.+.|.+.
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~---i~~~~s~~~is~~V~~--------~~~~~a~~~Lh~~ 61 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALED--INVRM---ICYGASNHNLCFLVKE--------EDKDEVVQRLHSR 61 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHh--CCeEE---EEEecCccEEEEEEeH--------HHHHHHHHHHHHH
Confidence 4566664 789999999999976 44443 233433333 366642 3344444555543
No 311
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=46.02 E-value=3.6e+02 Score=27.96 Aligned_cols=72 Identities=11% Similarity=0.052 Sum_probs=46.6
Q ss_pred CCcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEee-ecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013722 324 EGLELELYTDDRFGLLSDITRILREYGLCIRRAEIS-TMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVK 399 (437)
Q Consensus 324 ~~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~-T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~ 399 (437)
|...+.+.-+||||=|.++.+.+...+-||...+-. ..+-....++...... +++..+++.+.|.+.-..+.
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~----~~~h~~~i~~~L~~~Gy~~~ 396 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELN----DKEDFAGLLERMAAADIHYE 396 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeC----CHHHHHHHHHHHHHCCCCeE
Confidence 346899999999999999999666666688855544 3332222333222211 24677888888888655443
No 312
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=45.62 E-value=35 Score=25.60 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=25.5
Q ss_pred EEEEEe-CCCcchHHHHHHHHHhCCCeEEEE
Q 013722 118 SIELTG-TDRPGLLSEVSAVLTDLSCSVVSA 147 (437)
Q Consensus 118 ~i~v~~-~DrpGLL~~I~~~l~~~g~~I~~A 147 (437)
.++|.+ ++.||.+++|.+.|+++|+||.-.
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 455664 466999999999999999999988
No 313
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=45.55 E-value=1.3e+02 Score=22.70 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=27.2
Q ss_pred EEEEEe---CCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 118 SIELTG---TDRPGLLSEVSAVLTDLSCSVVSAEIWT 151 (437)
Q Consensus 118 ~i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~i~T 151 (437)
.|++.+ .+.+|+++++..+|+++++++......+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 466644 4789999999999999999998765543
No 314
>PRK14646 hypothetical protein; Provisional
Probab=45.49 E-value=1.9e+02 Score=25.75 Aligned_cols=83 Identities=11% Similarity=0.068 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccccCCCCC-----CCCCCC
Q 013722 338 LLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPP-----KLPQEP 412 (437)
Q Consensus 338 LL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~-----~~~~~~ 412 (437)
+...+..++.++|+.+....+...|....=..||...+|..++=++++.+.+.|.+ +|++.|.- +.+ +||+.+
T Consensus 9 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~-~LD~~D~i-~~~Y~LEVSSPGld 86 (155)
T PRK14646 9 LEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASE-EIENSNLL-NCSYVLEISSQGVS 86 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHH-HhCcCCCC-CCCeEEEEcCCCCC
Confidence 44567788999999999999988876554466675444556776789999999988 77765422 222 277788
Q ss_pred Cccccccccc
Q 013722 413 ARSFFFTNFF 422 (437)
Q Consensus 413 ~~~~~~~~~~ 422 (437)
++.+..--+-
T Consensus 87 RpL~~~~df~ 96 (155)
T PRK14646 87 DELTSERDFK 96 (155)
T ss_pred CcCCCHHHHH
Confidence 8777654443
No 315
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=45.38 E-value=1.1e+02 Score=23.32 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=35.6
Q ss_pred CCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722 124 TDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLCN 186 (437)
Q Consensus 124 ~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (437)
.-.||++++|.++|+++|+||.-.-. ++ ..-.|.|.. . .+ ++++++.|.+.|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~---~-~~-~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM---E-NA-EDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh---h-hc-ChHHHHHHHHHHHH
Confidence 45699999999999999999987742 22 333344443 1 22 12366777777765
No 316
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=44.97 E-value=42 Score=28.60 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=34.2
Q ss_pred CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013722 334 DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQV 398 (437)
Q Consensus 334 DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~ 398 (437)
|=+|+|+.|.+.|++.||.|.- ++|+.. |--.| .++.+++-.++|.++-.+|
T Consensus 75 gltGilasV~~pLsd~gigIFa--vStydt---DhiLV--------r~~dLekAv~~L~eaGhev 126 (128)
T COG3603 75 GLTGILASVSQPLSDNGIGIFA--VSTYDT---DHILV--------REEDLEKAVKALEEAGHEV 126 (128)
T ss_pred CcchhhhhhhhhHhhCCccEEE--EEeccC---ceEEE--------ehhhHHHHHHHHHHcCCcc
Confidence 7799999999999999999864 455521 11112 2355666666776654443
No 317
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=44.30 E-value=59 Score=24.37 Aligned_cols=33 Identities=6% Similarity=0.237 Sum_probs=24.0
Q ss_pred HHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCC
Q 013722 45 IQFLVDLNLVITKAYISSDGGYLMDVFYVTDIN 77 (437)
Q Consensus 45 ~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~ 77 (437)
...+..+|..+..=.|.|.|||.+..|.+....
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 457789999999999999999999999995543
No 318
>PRK14633 hypothetical protein; Provisional
Probab=44.12 E-value=2.3e+02 Score=25.10 Aligned_cols=88 Identities=18% Similarity=0.173 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeCCCcc
Q 013722 260 LLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--RASEGLELELYTDDRFG 337 (437)
Q Consensus 260 L~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~~~~~~~iev~~~DrpG 337 (437)
+...+..++..+|+.+.+......++.. -..+|..++|-.+ +.++.+-..|...|.. ..+..|.+||++|.--.
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~-lrV~ID~~~Gv~l---ddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR 81 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLT-IRIFIDHENGVSV---DDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR 81 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcE-EEEEEeCCCCCCH---HHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence 3445667899999999999988765554 4566666666433 4788888888888863 34678999999875544
Q ss_pred hHHHHHHHHHHcCC
Q 013722 338 LLSDITRILREYGL 351 (437)
Q Consensus 338 LL~~I~~~l~~~~i 351 (437)
-|......-.-.|=
T Consensus 82 pL~~~~~f~r~~G~ 95 (150)
T PRK14633 82 QIFNIIQAQALVGF 95 (150)
T ss_pred CCCCHHHHHHhCCC
Confidence 46555555555443
No 319
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=43.30 E-value=1.2e+02 Score=21.43 Aligned_cols=30 Identities=13% Similarity=0.391 Sum_probs=25.2
Q ss_pred EEEEe---CCCcchHHHHHHHHHhCCCeEEEEE
Q 013722 119 IELTG---TDRPGLLSEVSAVLTDLSCSVVSAE 148 (437)
Q Consensus 119 i~v~~---~DrpGLL~~I~~~l~~~g~~I~~A~ 148 (437)
+++.+ .+.||+++++...|+++|+++....
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 55654 4779999999999999999997765
No 320
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.94 E-value=2.3e+02 Score=25.31 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=53.3
Q ss_pred CchHHHHHHHHHhCCCeEEEEEEEecC-CeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeC-
Q 013722 258 PKLLFDTVCCLTDMQYVVYHGTVVTGR-MEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--RASEGLELELYTD- 333 (437)
Q Consensus 258 pgL~~~v~~~L~~~~lnI~~a~i~t~~-g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~~~~~~~iev~~~- 333 (437)
..++.-+-..+.++|+.+++.++...+ ++.+..|+ ..+.|-.+ +.++.+-+.+...|.. ..+..|.+||+++
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~i-d~~g~v~l---ddC~~vSr~is~~LD~edpi~~~Y~LEVSSPG 83 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIYI-DKEGGVTL---DDCADVSRAISALLDVEDPIEGAYFLEVSSPG 83 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEe-CCCCCCCH---HHHHHHHHHHHHHhccCCcccccEEEEeeCCC
Confidence 345555667889999999999999987 46655444 43433323 3688888888887763 3456799999986
Q ss_pred -CCcc
Q 013722 334 -DRFG 337 (437)
Q Consensus 334 -DrpG 337 (437)
|||=
T Consensus 84 ldRpL 88 (153)
T COG0779 84 LDRPL 88 (153)
T ss_pred CCCCc
Confidence 5773
No 321
>PRK08639 threonine dehydratase; Validated
Probab=41.71 E-value=1.6e+02 Score=30.72 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=43.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE-eC-CEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhc
Q 013722 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS-DG-GYLMDVFYVTDINGQKIGDQATISYIKTTVETN 97 (437)
Q Consensus 25 ~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t-~~-g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 97 (437)
.....+.+.-|||||-|.+++..+...+.||..-+-.. .+ +.. .++...+-.+ ++..+.|.+.|.+.
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~-~v~v~iE~~~-----~~h~~~i~~~L~~~ 402 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETG-PVLVGIELKD-----AEDYDGLIERMEAF 402 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCce-EEEEEEEeCC-----HHHHHHHHHHHHHC
Confidence 45678999999999999999997777666999775542 11 122 1222222222 24567788888774
No 322
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=41.68 E-value=1.4e+02 Score=22.07 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=26.8
Q ss_pred EEEEEEeC--CCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722 117 TSIELTGT--DRPGLLSEVSAVLTDLSCSVVSAEIW 150 (437)
Q Consensus 117 t~i~v~~~--DrpGLL~~I~~~l~~~g~~I~~A~i~ 150 (437)
..|.+.|. .+||+++++..+|++.|+++......
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~ 38 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS 38 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec
Confidence 35667764 36899999999999999999766543
No 323
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=40.12 E-value=6.2e+02 Score=28.95 Aligned_cols=101 Identities=9% Similarity=-0.069 Sum_probs=63.6
Q ss_pred CCeeEEEEEeC---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHH-Hhh
Q 013722 245 RDYTAVTIRSK---DRPKLLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAA-IER 320 (437)
Q Consensus 245 ~~~t~V~V~~~---DrpgL~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~-l~~ 320 (437)
.+-+.|+|.+. +.+|.++++..+|.+.|+||..-...+. +.. .+|.+... ..+.+.+.|++. ...
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~s-is~~i~~~---------~~~~~~~~l~~~~~~~ 383 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQL-LQLAYTSE---------VADSALKLLDDAALPG 383 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-CcE-EEEEEeHH---------HHHHHHHHHHhhcCCC
Confidence 34557777765 7788999999999999999986653322 221 23444321 122333333331 011
Q ss_pred cc---CCCcEEEEEeC---CCcchHHHHHHHHHHcCCeEEEE
Q 013722 321 RA---SEGLELELYTD---DRFGLLSDITRILREYGLCIRRA 356 (437)
Q Consensus 321 ~~---~~~~~iev~~~---DrpGLL~~I~~~l~~~~i~I~~A 356 (437)
+. ..-.+|.|.+. .+||+..++-.+|.+.||++.+-
T Consensus 384 ~i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 384 ELKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred cEEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 11 12356778774 58999999999999999998553
No 324
>PRK14630 hypothetical protein; Provisional
Probab=39.79 E-value=2.6e+02 Score=24.58 Aligned_cols=42 Identities=5% Similarity=-0.027 Sum_probs=30.1
Q ss_pred CCccHHHHHHHHHHhCCceEEEEEEEEeC-CEEEEEEEEEeCCC
Q 013722 36 NRHGILLEVIQFLVDLNLVITKAYISSDG-GYLMDVFYVTDING 78 (437)
Q Consensus 36 DrpGLla~i~~~L~~~glnI~~A~I~t~~-g~~~d~F~V~~~~g 78 (437)
|..-+-..+..++..+|+.+.+......+ ++.+ ..++..++|
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~g 48 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKI-QIVLYKKDS 48 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCC
Confidence 45567778889999999999999987754 4554 445533344
No 325
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.66 E-value=31 Score=27.06 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.4
Q ss_pred eCCCcchHHHHHHHHHhCCCeEEEEE
Q 013722 123 GTDRPGLLSEVSAVLTDLSCSVVSAE 148 (437)
Q Consensus 123 ~~DrpGLL~~I~~~l~~~g~~I~~A~ 148 (437)
.++.||++++|..+|+++|+||.-.-
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 36889999999999999999998874
No 326
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=38.18 E-value=1.4e+02 Score=23.28 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=36.9
Q ss_pred EEEEEeCCCcchH----HHHHHHHHHcCCe-EEEEEeeecCCeEEEEEEEEc-CCCCCCChHHHHHHHHHHh
Q 013722 327 ELELYTDDRFGLL----SDITRILREYGLC-IRRAEISTMGRKVKDTFFVTD-ASGNPVDPKIVDSIQHQIG 392 (437)
Q Consensus 327 ~iev~~~DrpGLL----~~I~~~l~~~~i~-I~~A~I~T~g~~a~D~F~v~d-~~g~~l~~~~~~~l~~~L~ 392 (437)
.++|.-.=+||++ ..|.++|..+|.+ +...++... |.+.- ......+.++.+.+++.|+
T Consensus 2 ~~~V~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k~-------~~l~~~~~~~~~a~~~v~~i~~~lL 66 (80)
T PRK05974 2 KVKVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGKY-------FELELEGESEEKAEADLKEMCEKLL 66 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEEE-------EEEEEcCCchhhhHHHHHHHHHHhc
Confidence 3455555688988 5677778888887 666555443 77742 2222344556677777664
No 327
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=37.60 E-value=1.6e+02 Score=25.48 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=40.8
Q ss_pred HHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeCCCcchH
Q 013722 265 VCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--RASEGLELELYTDDRFGLL 339 (437)
Q Consensus 265 ~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~~~~~~~iev~~~DrpGLL 339 (437)
...+..+|+.+.+.++...++..+-..++....| +. -+.++++-..+...|.. ..+..|.+||+++.--.-|
T Consensus 3 ~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~g--v~-lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L 76 (141)
T PF02576_consen 3 EPLLEELGLELVDVEVVKEGGNRILRVFIDKDGG--VS-LDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPL 76 (141)
T ss_dssp HHHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS------HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--
T ss_pred ccchhhcCCEEEEEEEEECCCCEEEEEEEEeCCC--CC-HHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcC
Confidence 4567889999999999998765444555555444 22 23677777777766654 3467899999986543334
No 328
>PRK02047 hypothetical protein; Provisional
Probab=36.49 E-value=1.7e+02 Score=23.54 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=48.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE----eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhc
Q 013722 26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS----DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETN 97 (437)
Q Consensus 26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t----~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 97 (437)
-.+.+.|.+++.+++...+..++..+...+..+.+.+ .|.|..-+..|.- .+++.+..|-++|...
T Consensus 15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v------~s~eq~~~iY~~L~~~ 84 (91)
T PRK02047 15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRA------TSREQLDNIYRALTGH 84 (91)
T ss_pred CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEE------CCHHHHHHHHHHHhhC
Confidence 3588999999999999999999999977777777653 4556554444432 3345777788888664
No 329
>PRK14632 hypothetical protein; Provisional
Probab=36.19 E-value=3.1e+02 Score=24.87 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEecCCeEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeCCCcc
Q 013722 260 LLFDTVCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--RASEGLELELYTDDRFG 337 (437)
Q Consensus 260 L~~~v~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~~~~~~~iev~~~DrpG 337 (437)
+..-+.-++..+|+.+++......++..+ ..+|..++|-. -+.++.+-..|.+.|.. -++..|.+||+++.--.
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~l-rV~ID~~~GV~---ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 85 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVV-RLFVDGPEGVT---IDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER 85 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEE-EEEEECCCCCC---HHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 44456677889999999999764333444 55555555633 34788888888888863 34678999999864433
Q ss_pred hHHHHHHHHHHcC
Q 013722 338 LLSDITRILREYG 350 (437)
Q Consensus 338 LL~~I~~~l~~~~ 350 (437)
-|...-..-.-.|
T Consensus 86 pL~~~~~f~r~iG 98 (172)
T PRK14632 86 PFFRAEQMSPYVG 98 (172)
T ss_pred cCCCHHHHHHhCC
Confidence 3444444444433
No 330
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=36.05 E-value=43 Score=25.09 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=29.2
Q ss_pred EEEEeC-CCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEE
Q 013722 328 LELYTD-DRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVT 372 (437)
Q Consensus 328 iev~~~-DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~ 372 (437)
|+|.+. +.||.+++|-+.|+++|++|..-... .+ .=.|.|.
T Consensus 4 vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~--~~--~isFtv~ 45 (67)
T cd04914 4 IKVKAKDNENDLQQRVFKALANAGISVDLINVS--PE--EVIFTVD 45 (67)
T ss_pred EEEecCCCCccHHHHHHHHHHHcCCcEEEEEec--CC--CEEEEEc
Confidence 444443 55999999999999999999988322 22 2356664
No 331
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=36.03 E-value=5e+02 Score=27.78 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=47.9
Q ss_pred CcEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccccc
Q 013722 325 GLELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGN 401 (437)
Q Consensus 325 ~~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~~~ 401 (437)
...+.|.-+||||=|.++++++... ||...+-.-.+.....+|...... ++++.++|.+.|.+.-..+.+.
T Consensus 325 e~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~----~~~~~~~l~~~L~~~Gy~~~dl 395 (499)
T TIGR01124 325 EALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLS----NPQERQEILARLNDGGYSVVDL 395 (499)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeC----CHHHHHHHHHHHHHcCCCeEEC
Confidence 4689999999999999999999985 554433332333333355443321 3467889999998876665543
No 332
>PRK00907 hypothetical protein; Provisional
Probab=35.40 E-value=1.8e+02 Score=23.59 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=43.5
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe----cCceeEEEEEEEeCCCCCcCCCHHHHHHHHHHHh
Q 013722 116 YTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT----HNARAAALLHVKDQSSGCAIEDQKRLLKIKKLLC 185 (437)
Q Consensus 116 ~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T----~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (437)
.+.+-|.|.++++|...|..++..+.-......+.. .|....-.+.|+-. +.++++.|=++|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at-------s~eQld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE-------SREQYDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 478999999999999999999999988776666643 33334555555552 3455555544443
No 333
>PRK14636 hypothetical protein; Provisional
Probab=34.93 E-value=3.6e+02 Score=24.64 Aligned_cols=80 Identities=8% Similarity=0.002 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccccCCCCC-----CCCCCC
Q 013722 338 LLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPP-----KLPQEP 412 (437)
Q Consensus 338 LL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~-----~~~~~~ 412 (437)
+-.-+..++.++|+.+....+...|....=..||..+.|..++=++++.+.+.|.. +|++.+.- +-+ +||+.+
T Consensus 7 i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~-~LD~~d~i-~~~Y~LEVSSPGld 84 (176)
T PRK14636 7 LTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSD-VFDELDPI-EDAYRLEVSSPGID 84 (176)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHH-HhccCcCC-CCCeEEEEeCCCCC
Confidence 45567778999999999999977765444355565444455776789999999988 56654332 212 277777
Q ss_pred Ccccccc
Q 013722 413 ARSFFFT 419 (437)
Q Consensus 413 ~~~~~~~ 419 (437)
++.+.--
T Consensus 85 RpL~~~~ 91 (176)
T PRK14636 85 RPLTRPK 91 (176)
T ss_pred CCCCCHH
Confidence 7766543
No 334
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=34.65 E-value=2.7e+02 Score=26.65 Aligned_cols=102 Identities=16% Similarity=0.232 Sum_probs=59.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEE----EEEEEeCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcc
Q 013722 26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITK----AYISSDGGYLMDVFYVTDINGQKIGDQATISYIKTTVETNASFL 101 (437)
Q Consensus 26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~----A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~ 101 (437)
-...|.+.+.|+....++|-.+|..+|.++.. ..+|..-|. +.+.. .+ ...+ +.++.+|+-...
T Consensus 91 vaiive~lTDN~nRt~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~----i~~~~-~~--~~~d---~~~e~aIe~Gae-- 158 (234)
T PF01709_consen 91 VAIIVECLTDNKNRTVSDIRSIFKKNGGSLGPSGSVSFMFERKGV----IEVSK-KD--LDED---ELMEDAIEAGAE-- 158 (234)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHTTT-EEE-TTSSGGGEEEEEE----EEEEH-CC--S-HH---HHHHHHHHHTES--
T ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHcCceeCCCCcceeeeeeeEE----EEEEe-CC--CChH---HHHHHHHhCCCc--
Confidence 34589999999999999999999999998765 222333343 23321 11 1111 334444443221
Q ss_pred cCcceeeeecCCCceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEE
Q 013722 102 NSMRSSVGVVPSKEYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIW 150 (437)
Q Consensus 102 ~~~~r~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~ 150 (437)
-|. .+.+. +.|.|. |.-|..+..+|...|+.|.++.+.
T Consensus 159 -----Dve--~~d~~--~~~~c~--p~~~~~v~~~L~~~g~~i~~~e~~ 196 (234)
T PF01709_consen 159 -----DVE--EDDGE--FEFICD--PSDLSAVKKALEKKGYEIESAELE 196 (234)
T ss_dssp -----EEE--ECTSE--EEEEEE--GGGHHHHHHHHHHTT---SEEEEE
T ss_pred -----Eee--ecCCe--EEEEEC--HHHHHHHHHHHHHcCCCeeEEEEE
Confidence 111 11223 444443 788999999999999999988875
No 335
>PRK14631 hypothetical protein; Provisional
Probab=34.40 E-value=3.6e+02 Score=24.60 Aligned_cols=83 Identities=13% Similarity=0.196 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcC----------------CCCCCChHHHHHHHHHHhhccccccccC
Q 013722 339 LSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDA----------------SGNPVDPKIVDSIQHQIGRTILQVKGNL 402 (437)
Q Consensus 339 L~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~----------------~g~~l~~~~~~~l~~~L~~~~~~~~~~~ 402 (437)
-.-+.-++.++|+.+....+.+-|..-.=..||..+ .+..++=++++.+.++|.. +|++.+.-
T Consensus 11 ~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~-~LD~~d~i 89 (174)
T PRK14631 11 TDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGA-MLDVHDPI 89 (174)
T ss_pred HHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHH-HhcccccC
Confidence 345667888999999999998876544334455422 1334666789999999988 67765532
Q ss_pred CCCC-----CCCCCCCcccccccccc
Q 013722 403 NTPP-----KLPQEPARSFFFTNFFK 423 (437)
Q Consensus 403 ~~~~-----~~~~~~~~~~~~~~~~~ 423 (437)
+-. +||+.+++.+..--+-|
T Consensus 90 -~~~Y~LEVSSPGldRpL~~~~df~r 114 (174)
T PRK14631 90 -SGEYALEVSSPGWDRPFFQLEQLQG 114 (174)
T ss_pred -CCCeEEEEeCCCCCCcCCCHHHHHH
Confidence 212 27778888877554443
No 336
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=34.09 E-value=6.1e+02 Score=27.11 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=41.3
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEecCceeEEEE-EEEeCCCCCcCCCHHHHHHHHHHHhh
Q 013722 115 EYTSIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWTHNARAAALL-HVKDQSSGCAIEDQKRLLKIKKLLCN 186 (437)
Q Consensus 115 ~~t~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T~~~~~~d~F-~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (437)
....+.|.-+||||-|.+++.++.. .||...+-.-.+.....+| -|.-+ ++++.+.+.+.|.+
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~-------~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLS-------NPQERQEILARLND 387 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 4667889999999999999999997 4666555433222222233 23321 45677777777764
No 337
>PRK14638 hypothetical protein; Provisional
Probab=33.28 E-value=3.4e+02 Score=23.98 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEecCC-eEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeCCCc
Q 013722 260 LLFDTVCCLTDMQYVVYHGTVVTGRM-EAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--RASEGLELELYTDDRF 336 (437)
Q Consensus 260 L~~~v~~~L~~~~lnI~~a~i~t~~g-~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~~~~~~~iev~~~Drp 336 (437)
+-.-+...+..+|+.+++......++ ..+ ..+|..++|.. . -+.++.+-..|.+.|.. ..+..|.+||+++.--
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~l-rV~ID~~~G~v-~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVL-RIIIDNPVGYV-S-VRDCELFSREIERFLDREDLIEHSYTLEVSSPGLD 86 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCCCc-C-HHHHHHHHHHHHHHhccccccCCceEEEEeCCCCC
Confidence 34456677889999999999988764 444 55566566632 1 24788888888888863 3467899999986443
Q ss_pred chHHHHHHHHHHcC
Q 013722 337 GLLSDITRILREYG 350 (437)
Q Consensus 337 GLL~~I~~~l~~~~ 350 (437)
.-|......-.-.|
T Consensus 87 RpL~~~~~f~r~~G 100 (150)
T PRK14638 87 RPLRGPKDYVRFTG 100 (150)
T ss_pred CCCCCHHHHHHhCC
Confidence 33444444444444
No 338
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=31.65 E-value=1.7e+02 Score=23.30 Aligned_cols=51 Identities=6% Similarity=-0.109 Sum_probs=36.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCC
Q 013722 25 EHATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKI 81 (437)
Q Consensus 25 ~~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~ 81 (437)
.....+.+...| +..+...|..+|.++........++. ..|++.|++|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 355677777777 67777888899999986654433222 3699999999864
No 339
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=29.84 E-value=2.6e+02 Score=23.97 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=29.4
Q ss_pred CCCceEEEEEEeC---CCcchHHHHHHHHHhCCCeEEEEE
Q 013722 112 PSKEYTSIELTGT---DRPGLLSEVSAVLTDLSCSVVSAE 148 (437)
Q Consensus 112 ~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~g~~I~~A~ 148 (437)
.+.++..+.+.++ |-+|+|+.|.+.|+++|+.|.-..
T Consensus 59 ~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavS 98 (128)
T COG3603 59 IEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVS 98 (128)
T ss_pred ecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEE
Confidence 3445666666654 899999999999999999997654
No 340
>PRK00341 hypothetical protein; Provisional
Probab=28.41 E-value=2.6e+02 Score=22.54 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=46.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEE----eCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhc
Q 013722 28 TVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISS----DGGYLMDVFYVTDINGQKIGDQATISYIKTTVETN 97 (437)
Q Consensus 28 ~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t----~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 97 (437)
+.+.|.+.+.+++...+..++..+. .+....+.+ .|.|..-++.|.- .+++.+..|-++|...
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~------~s~~q~~~iy~~L~~~ 84 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVA------TDEDQLQDINSALRAT 84 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhhC
Confidence 8999999999999999999999887 776676653 4455554455532 2345677788888664
No 341
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=27.96 E-value=2.7e+02 Score=21.28 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCCcchH----HHHHHHHHHcCCe-EEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013722 333 DDRFGLL----SDITRILREYGLC-IRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIG 392 (437)
Q Consensus 333 ~DrpGLL----~~I~~~l~~~~i~-I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~ 392 (437)
.=+||++ ..|.++|..+|.+ +..+++... |++. | +++++.+.+++.|+
T Consensus 8 ~~k~gv~Dp~G~ti~~~l~~lg~~~v~~Vr~~k~-------~~l~---~--~~~~~~~~i~~~lL 60 (73)
T PRK06423 8 TYKPGVEDPEALTILKNLNILGYNGIKGVSISKV-------YYFD---A--DSYNEVDEIAGKIL 60 (73)
T ss_pred EECCCCcChHHHHHHHHHHHcCCCCcceEEEEEE-------EEEe---c--CCHHHHHHHHHHhc
Confidence 3588888 5677888889886 666555443 7772 3 44556677777664
No 342
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=27.88 E-value=47 Score=29.75 Aligned_cols=56 Identities=9% Similarity=0.213 Sum_probs=35.8
Q ss_pred EEEcCCCCCCChH-HHHHHHHHH----hhccccccccCCCCCCCCCCCCcccccccccccc
Q 013722 370 FVTDASGNPVDPK-IVDSIQHQI----GRTILQVKGNLNTPPKLPQEPARSFFFTNFFKGR 425 (437)
Q Consensus 370 ~v~d~~g~~l~~~-~~~~l~~~L----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (437)
.+-|++|+.++.+ ..+.|.+.. .++.+=+.+.-|-.+.........+||+.|+++|
T Consensus 71 i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~~~a~~~lSLS~mTfpH 131 (157)
T PRK00103 71 IALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSPAVKKRADQSLSLSKLTLPH 131 (157)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCHHHHHhcCceEEeccCCCcH
Confidence 3479999999864 334444432 2344555565555333334666789999999998
No 343
>PRK14638 hypothetical protein; Provisional
Probab=27.58 E-value=3.8e+02 Score=23.72 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=52.7
Q ss_pred HHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccccCCCCC-----CCCCCCCcc
Q 013722 341 DITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPP-----KLPQEPARS 415 (437)
Q Consensus 341 ~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~-----~~~~~~~~~ 415 (437)
-+..++.++|+.+....+...|..-.=..+|.. .+..++=++++++.+.|.+ +|++.|.- +-. +||+.+++.
T Consensus 13 ~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~-~~G~v~lddC~~vSr~is~-~LD~~d~i-~~~Y~LEVSSPGldRpL 89 (150)
T PRK14638 13 EAERIAEEQGLEIFDVQYRRESRGWVLRIIIDN-PVGYVSVRDCELFSREIER-FLDREDLI-EHSYTLEVSSPGLDRPL 89 (150)
T ss_pred HHHHHHHHcCCEEEEEEEEecCCCcEEEEEEEC-CCCCcCHHHHHHHHHHHHH-Hhcccccc-CCceEEEEeCCCCCCCC
Confidence 456678899999999999887654444555643 3334666789999999988 66665422 111 277788877
Q ss_pred ccccccc
Q 013722 416 FFFTNFF 422 (437)
Q Consensus 416 ~~~~~~~ 422 (437)
+...-+.
T Consensus 90 ~~~~~f~ 96 (150)
T PRK14638 90 RGPKDYV 96 (150)
T ss_pred CCHHHHH
Confidence 6654443
No 344
>PRK14640 hypothetical protein; Provisional
Probab=27.14 E-value=4.4e+02 Score=23.30 Aligned_cols=79 Identities=18% Similarity=0.293 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccccCCCCC-----CCCCCCC
Q 013722 339 LSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPP-----KLPQEPA 413 (437)
Q Consensus 339 L~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~-----~~~~~~~ 413 (437)
-..+..++.++|+.+...++...|..-.=..||...+| ++=++++.+.++|.. .|++.|.- +-+ +||+.++
T Consensus 9 ~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~g--v~lddC~~vSr~is~-~LD~~d~i-~~~Y~LEVSSPGl~R 84 (152)
T PRK14640 9 TDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENG--VSVENCAEVSHQVGA-IMDVEDPI-TEEYYLEVSSPGLDR 84 (152)
T ss_pred HHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CCHHHHHHHHHHHHH-HhcccccC-CCCeEEEEeCCCCCC
Confidence 34567788899999999999777654333455643333 666789999999988 66665422 111 2777888
Q ss_pred cccccccc
Q 013722 414 RSFFFTNF 421 (437)
Q Consensus 414 ~~~~~~~~ 421 (437)
+.+..--+
T Consensus 85 pL~~~~~f 92 (152)
T PRK14640 85 PLFKVAQF 92 (152)
T ss_pred cCCCHHHH
Confidence 77654443
No 345
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=27.13 E-value=1.3e+02 Score=23.93 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=34.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCC
Q 013722 26 HATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKI 81 (437)
Q Consensus 26 ~~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~ 81 (437)
+...+.+...|...+ ..+...+..+|.+|...-.....|+ .|++.|++|+.+
T Consensus 59 ~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRL 110 (114)
T ss_pred CceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEE
Confidence 445677777775555 5566666779999876433333344 478999999864
No 346
>PRK14645 hypothetical protein; Provisional
Probab=26.93 E-value=4.5e+02 Score=23.37 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccccCCCCC-----CCCCCC
Q 013722 338 LLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPP-----KLPQEP 412 (437)
Q Consensus 338 LL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~-----~~~~~~ 412 (437)
+-.-+..++.++|+.+...++..-|..-.=..||...+|..++=++++++.+.|.+ +|++.+.- +.. +||+.+
T Consensus 11 i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~-~LD~~d~i-~~~Y~LEVSSPGld 88 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEA-ELDRLDPI-EGEYRLEVESPGPK 88 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHH-HhcccccC-CCceEEEEeCCCCC
Confidence 44556788899999999999987764333345564334666776789999999987 66654432 111 277777
Q ss_pred Ccccccccccc
Q 013722 413 ARSFFFTNFFK 423 (437)
Q Consensus 413 ~~~~~~~~~~~ 423 (437)
++....--+.|
T Consensus 89 RpL~~~~df~r 99 (154)
T PRK14645 89 RPLFTARHFER 99 (154)
T ss_pred CCCCCHHHHHH
Confidence 77766544443
No 347
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.98 E-value=2.6e+02 Score=20.19 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCCe
Q 013722 118 SIELTGT---DRPGLLSEVSAVLTDLSCS 143 (437)
Q Consensus 118 ~i~v~~~---DrpGLL~~I~~~l~~~g~~ 143 (437)
.+.+.|. ++||+++++..+|++.++.
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~ 31 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVR 31 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeE
Confidence 5677775 7899999999999764333
No 348
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=25.68 E-value=2e+02 Score=21.45 Aligned_cols=33 Identities=12% Similarity=-0.125 Sum_probs=24.2
Q ss_pred HHHHHhCCCeEEEEEEEecCCeEEEEEEEEccC
Q 013722 265 VCCLTDMQYVVYHGTVVTGRMEAYQEYYIKHVD 297 (437)
Q Consensus 265 ~~~L~~~~lnI~~a~i~t~~g~ald~F~V~~~~ 297 (437)
...+...|+.+..=.+.|.|||.+..|.|..+.
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 345678899999999999999999999998876
No 349
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=25.01 E-value=2e+02 Score=22.77 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=34.7
Q ss_pred cEEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCC
Q 013722 326 LELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPV 379 (437)
Q Consensus 326 ~~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l 379 (437)
..+.+...| +....+.|.+.|+++.......-|.. ..|++.|++|..+
T Consensus 63 ~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 63 WLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred EEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 456777777 67778889999999987644332222 4799999999865
No 350
>PRK14639 hypothetical protein; Provisional
Probab=24.34 E-value=4.8e+02 Score=22.76 Aligned_cols=74 Identities=12% Similarity=0.217 Sum_probs=50.1
Q ss_pred HHHHHHHcCCeEEEEEeeecCCeEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccccCCCCC-----CCCCCCCccc
Q 013722 342 ITRILREYGLCIRRAEISTMGRKVKDTFFVTDASGNPVDPKIVDSIQHQIGRTILQVKGNLNTPP-----KLPQEPARSF 416 (437)
Q Consensus 342 I~~~l~~~~i~I~~A~I~T~g~~a~D~F~v~d~~g~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~-----~~~~~~~~~~ 416 (437)
+..++.++|+.+......+.|..-.=..+|... |. ++=++++++.+.|.+ .|++.|.- +-+ +||+.+++.+
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~-~g-v~iddC~~vSr~is~-~LD~~d~i-~~~Y~LEVSSPGl~RpL~ 78 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKE-GG-VNLDDCERLSELLSP-IFDVEPPV-SGEYFLEVSSPGLERKLS 78 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCC-CC-CCHHHHHHHHHHHHH-Hhcccccc-CCCeEEEEeCCCCCCcCC
Confidence 456788999999999998877654445666433 33 676789999999888 66654422 111 2777777766
Q ss_pred ccc
Q 013722 417 FFT 419 (437)
Q Consensus 417 ~~~ 419 (437)
+.-
T Consensus 79 ~~~ 81 (140)
T PRK14639 79 KIE 81 (140)
T ss_pred CHH
Confidence 543
No 351
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=24.30 E-value=1.7e+02 Score=30.20 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=31.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLSCSVVSAEIWT 151 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g~~I~~A~i~T 151 (437)
.++|.|.||-||..++-..|...+||+...+|..
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~ 35 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP 35 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecC
Confidence 4789999999999999999999999999998843
No 352
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=23.38 E-value=5.2e+02 Score=22.78 Aligned_cols=90 Identities=11% Similarity=0.124 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEEeCC-EEEEEEEEEeCCCCCCCcHHHHHHHHHHHhhccCcccCcceeeeecCCCceE
Q 013722 39 GILLEVIQFLVDLNLVITKAYISSDGG-YLMDVFYVTDINGQKIGDQATISYIKTTVETNASFLNSMRSSVGVVPSKEYT 117 (437)
Q Consensus 39 GLla~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~r~v~~~~~~~~t 117 (437)
-+-..+..++..+|+.+.+..+...++ +.+ ..+| |.++. + +-+.++.+-+.+...+.. .++-...+
T Consensus 8 ~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l-~V~I-d~~~g-v-~iddc~~~Sr~is~~LD~---------~d~i~~~Y 74 (154)
T PRK00092 8 QLTELIEPVVEALGYELVDVEYVKEGRDSTL-RIYI-DKEGG-I-DLDDCEEVSRQISAVLDV---------EDPIPGAY 74 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEecCCCcEE-EEEE-ECCCC-C-CHHHHHHHHHHHHHHhcc---------ccCCCCCe
Confidence 355667888999999999999988654 444 3444 43332 2 224555565555554321 01222457
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCC
Q 013722 118 SIELTGTDRPGLLSEVSAVLTDLS 141 (437)
Q Consensus 118 ~i~v~~~DrpGLL~~I~~~l~~~g 141 (437)
.++|.+|.----|...-..-...|
T Consensus 75 ~LEVSSPGi~RpL~~~~~f~r~~G 98 (154)
T PRK00092 75 TLEVSSPGLDRPLKKARDFRRFIG 98 (154)
T ss_pred EEEEeCCCCCCcCCCHHHHHHhCC
Confidence 788886533333444444444444
No 353
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=22.86 E-value=49 Score=29.57 Aligned_cols=57 Identities=7% Similarity=0.154 Sum_probs=38.0
Q ss_pred EEE-EcCCCCCCChHHHHHHHHHHhh----ccccccccCCCCCCCCCCCCcccccccccccc
Q 013722 369 FFV-TDASGNPVDPKIVDSIQHQIGR----TILQVKGNLNTPPKLPQEPARSFFFTNFFKGR 425 (437)
Q Consensus 369 F~v-~d~~g~~l~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (437)
|.| -|..|+.++.++....-..+.. +.+-+.+..|--++.-......+|||.|+|||
T Consensus 69 ~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G~~i~f~IGG~~Gl~~~~~~~a~~~~sls~lT~PH 130 (155)
T COG1576 69 YVVLLDIRGKALSSEEFADFLERLRDDGRDISFLIGGADGLSEAVKARADQVLSLSKLTLPH 130 (155)
T ss_pred eEEEEecCCCcCChHHHHHHHHHHHhcCCeEEEEEeCcccCCHHHHHHHhhheecccccchh
Confidence 444 4788999986554444444443 56677766665333334678899999999998
No 354
>PRK14631 hypothetical protein; Provisional
Probab=22.12 E-value=6e+02 Score=23.10 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEecCC-eEEEEEEEEcc----------------CCCCCCcHHHHHHHHHHHHHHHh--h
Q 013722 260 LLFDTVCCLTDMQYVVYHGTVVTGRM-EAYQEYYIKHV----------------DGFPISSEAERQRVMACLEAAIE--R 320 (437)
Q Consensus 260 L~~~v~~~L~~~~lnI~~a~i~t~~g-~ald~F~V~~~----------------~g~~~~~~~~~~~l~~~L~~~l~--~ 320 (437)
+...+.-++..+|+.+.+......++ ..+ ..+|..+ .+..+ .-+.++.+-+.|...|. .
T Consensus 10 i~~li~p~~~~~G~eLvdve~~~~~~~~~L-rV~ID~~~~~~~~~~~~~~~~~~~~~gv-tiddC~~vSr~is~~LD~~d 87 (174)
T PRK14631 10 LTDIIAPAVAACGVDLWGIEFLPQGKRSLL-RIYIDRLVEENAEPVINEDGEVEQGRGI-GVEDCVRVTQQVGAMLDVHD 87 (174)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCceEE-EEEEecCcccccccccccccccccCCCc-CHHHHHHHHHHHHHHhcccc
Confidence 45566678899999999999998764 555 4444433 11112 23478888888888886 3
Q ss_pred ccCCCcEEEEEeCCCcchHHHHHHHHHHcCC
Q 013722 321 RASEGLELELYTDDRFGLLSDITRILREYGL 351 (437)
Q Consensus 321 ~~~~~~~iev~~~DrpGLL~~I~~~l~~~~i 351 (437)
.++..|.+||+++.--.-|......-.-.|=
T Consensus 88 ~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~ 118 (174)
T PRK14631 88 PISGEYALEVSSPGWDRPFFQLEQLQGYIGQ 118 (174)
T ss_pred cCCCCeEEEEeCCCCCCcCCCHHHHHHhCCC
Confidence 3577899999987655556666665555553
No 355
>PRK14644 hypothetical protein; Provisional
Probab=21.86 E-value=5.3e+02 Score=22.40 Aligned_cols=64 Identities=9% Similarity=-0.018 Sum_probs=46.4
Q ss_pred HHHHhCCCeEEEEEEEecCC-eEEEEEEEEccCCCCCCcHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeC--CCc
Q 013722 266 CCLTDMQYVVYHGTVVTGRM-EAYQEYYIKHVDGFPISSEAERQRVMACLEAAIER--RASEGLELELYTD--DRF 336 (437)
Q Consensus 266 ~~L~~~~lnI~~a~i~t~~g-~ald~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--~~~~~~~iev~~~--Drp 336 (437)
..+..+|+.+.+......++ +.+ ..+|... +-+.++.+-+.|.+.|.. ..+..+.+||+++ |||
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~L-rV~Idk~------~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRp 74 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFL-EVILNSR------DLKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMD 74 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEE-EEEECCC------CHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCC
Confidence 45788999999999998765 555 4444322 235788888888888863 4567899999985 677
No 356
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.13 E-value=1.8e+02 Score=23.14 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=35.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHHcCCeEEEEEeeecCCe-EEEEEEEEcCCCCCC
Q 013722 327 ELELYTDDRFGLLSDITRILREYGLCIRRAEISTMGRK-VKDTFFVTDASGNPV 379 (437)
Q Consensus 327 ~iev~~~DrpGLL~~I~~~l~~~~i~I~~A~I~T~g~~-a~D~F~v~d~~g~~l 379 (437)
.+-+...+. +..+.+.|.+.|+.+...-....|.. ....||+.|++|..+
T Consensus 70 hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~v 120 (125)
T cd07253 70 DLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLI 120 (125)
T ss_pred eEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEE
Confidence 445555554 88899999999999876655443322 235789999999865
No 357
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=20.94 E-value=1.6e+02 Score=22.70 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=33.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCC
Q 013722 27 ATVIQVDSVNRHGILLEVIQFLVDLNLVITKAYISSDGGYLMDVFYVTDINGQKI 81 (437)
Q Consensus 27 ~~~I~V~~~DrpGLla~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~ 81 (437)
...+.+..+| +..+...+..+|+.+....-. +.....|++.|++|..+
T Consensus 65 ~~~~~~~v~d----~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~DP~G~~i 112 (114)
T cd07245 65 DDHIAFRVDD----LDAFRARLKAAGVPYTESDVP---GDGVRQLFVRDPDGNRI 112 (114)
T ss_pred cceEEEEeCC----HHHHHHHHHHcCCCcccccCC---CCCccEEEEECCCCCEE
Confidence 3466777777 678889999999998754321 12223478899999864
Done!