Query 013723
Match_columns 437
No_of_seqs 264 out of 1031
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:44:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 6.7E-73 1.5E-77 549.4 19.8 222 209-437 1-232 (258)
2 KOG4441 Proteins containing BT 100.0 4.8E-31 1E-35 283.9 12.8 234 22-322 30-264 (571)
3 PHA02713 hypothetical protein; 100.0 1.5E-29 3.2E-34 272.1 11.9 227 22-318 19-248 (557)
4 PHA02790 Kelch-like protein; P 99.9 9.5E-28 2.1E-32 253.9 10.9 177 22-252 16-195 (480)
5 PHA03098 kelch-like protein; P 99.9 7.9E-26 1.7E-30 241.2 13.9 224 25-319 6-237 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 6E-18 1.3E-22 142.8 7.9 103 22-132 4-110 (111)
7 smart00225 BTB Broad-Complex, 99.6 5.1E-16 1.1E-20 123.8 6.6 89 30-126 1-90 (90)
8 KOG4350 Uncharacterized conser 99.5 9.6E-14 2.1E-18 140.0 9.9 215 21-306 37-255 (620)
9 KOG2075 Topoisomerase TOP1-int 99.3 6.6E-12 1.4E-16 129.3 10.9 182 22-252 108-295 (521)
10 KOG4591 Uncharacterized conser 99.1 7E-11 1.5E-15 109.9 5.9 132 7-159 43-183 (280)
11 KOG4682 Uncharacterized conser 98.7 5.6E-08 1.2E-12 98.8 8.6 121 23-159 64-187 (488)
12 KOG0783 Uncharacterized conser 98.4 2.6E-07 5.7E-12 100.6 5.8 126 28-171 712-847 (1267)
13 KOG0783 Uncharacterized conser 98.2 1.6E-06 3.5E-11 94.6 6.5 65 26-92 556-633 (1267)
14 PF11822 DUF3342: Domain of un 97.8 1.6E-05 3.4E-10 79.8 3.8 86 38-133 14-104 (317)
15 smart00512 Skp1 Found in Skp1 96.9 0.0013 2.8E-08 55.7 4.6 79 31-112 4-104 (104)
16 PF02214 BTB_2: BTB/POZ domain 96.6 0.0012 2.6E-08 54.5 2.4 81 31-114 1-88 (94)
17 KOG2716 Polymerase delta-inter 96.3 0.011 2.3E-07 57.3 6.8 94 31-133 7-105 (230)
18 KOG3473 RNA polymerase II tran 96.1 0.013 2.9E-07 49.1 5.7 78 31-111 19-111 (112)
19 PF03931 Skp1_POZ: Skp1 family 95.7 0.03 6.6E-07 43.0 5.8 55 31-89 3-58 (62)
20 KOG2838 Uncharacterized conser 95.6 0.005 1.1E-07 60.6 1.2 99 11-113 115-219 (401)
21 PF07707 BACK: BTB And C-termi 94.7 0.0053 1.2E-07 50.7 -1.4 69 213-298 34-102 (103)
22 KOG1724 SCF ubiquitin ligase, 94.2 0.067 1.4E-06 49.3 4.7 90 36-134 13-128 (162)
23 smart00875 BACK BTB And C-term 92.1 0.22 4.7E-06 40.4 4.2 65 214-296 35-99 (101)
24 KOG2838 Uncharacterized conser 88.4 0.16 3.4E-06 50.4 0.4 58 38-96 261-329 (401)
25 KOG3840 Uncharaterized conserv 84.9 4.1 8.9E-05 41.2 8.1 90 23-114 90-186 (438)
26 KOG0511 Ankyrin repeat protein 83.8 1.3 2.7E-05 46.0 4.1 75 38-115 301-380 (516)
27 KOG2714 SETA binding protein S 81.6 2.4 5.3E-05 44.6 5.2 81 31-114 13-99 (465)
28 PF01466 Skp1: Skp1 family, di 71.8 2.8 6.1E-05 33.6 2.0 33 95-133 11-43 (78)
29 KOG0511 Ankyrin repeat protein 71.6 0.6 1.3E-05 48.3 -2.3 88 22-113 141-232 (516)
30 KOG3713 Voltage-gated K+ chann 71.1 13 0.00027 40.0 7.2 91 28-127 30-134 (477)
31 COG5201 SKP1 SCF ubiquitin lig 69.8 13 0.00027 33.2 5.8 93 31-133 4-122 (158)
32 KOG1987 Speckle-type POZ prote 69.6 5.3 0.00011 39.5 3.9 89 37-133 109-201 (297)
33 KOG1665 AFH1-interacting prote 69.6 17 0.00036 35.6 7.0 88 31-127 11-105 (302)
34 KOG2715 Uncharacterized conser 36.9 1.3E+02 0.0029 28.1 6.9 93 31-131 23-120 (210)
35 PHA00617 ribbon-helix-helix do 32.1 74 0.0016 26.0 4.0 37 217-253 44-80 (80)
36 PF01402 RHH_1: Ribbon-helix-h 23.4 1E+02 0.0022 20.7 2.9 34 218-251 5-38 (39)
37 KOG4350 Uncharacterized conser 22.7 50 0.0011 35.0 1.8 33 95-133 145-177 (620)
38 PRK04330 hypothetical protein; 22.3 53 0.0011 27.4 1.5 23 385-408 51-73 (88)
39 PF03685 UPF0147: Uncharacteri 21.6 55 0.0012 27.1 1.4 25 383-408 46-70 (85)
40 COG3919 Predicted ATP-grasp en 21.2 83 0.0018 32.2 2.9 44 38-81 160-206 (415)
41 KOG2723 Uncharacterized conser 20.0 2.3E+02 0.0049 27.6 5.5 81 31-114 11-97 (221)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=6.7e-73 Score=549.43 Aligned_cols=222 Identities=48% Similarity=0.812 Sum_probs=197.0
Q ss_pred CcchhhhcccCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhcCCccccc--------cchhhHHHHHHHHHHHHHh
Q 013723 209 KDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDAL--------VSDAQTLRNKCLVETIVCL 280 (437)
Q Consensus 209 ~~WW~EDl~~L~~~~~~rvi~am~~~g~~~~e~I~~al~~Ya~~~l~~~~~~~--------~~~~~~~~~r~llE~Iv~L 280 (437)
++|||||++.|++++|+|||.+|+++| +++++|+++|++||++|+|+..+.. .......++|.+||+||+|
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~-~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~l 79 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKG-MKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSL 79 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHh
Confidence 489999999999999999999999999 5999999999999999999983211 1222467899999999999
Q ss_pred cCCCCCCccChHHHHHHhhhhhhcCCCHHHHHHHHHHHhccccccCcCCeeecc-CCCCCccccHHHHHHHHHHHHhccC
Q 013723 281 LPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPA-RSSQTACYDVELVQCIVNEYLMHEK 359 (437)
Q Consensus 281 lp~~k~~~vs~~fL~~lLr~a~~l~~s~~cr~~LE~rIg~qLd~AtldDLLip~-~~~~~~~yDvd~V~riv~~Fl~~~~ 359 (437)
||.++++ +||+|||+|||+|+++++|..||.+||+|||.|||||||||||||+ ++..+|+||||+|+|||++||.+.+
T Consensus 80 LP~e~~s-vsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~ 158 (258)
T PF03000_consen 80 LPPEKGS-VSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEE 158 (258)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhccc
Confidence 9999999 9999999999999999999999999999999999999999999999 3334699999999999999999865
Q ss_pred CCCcCCCCCCCCCC-CCCccCCchhHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHhcCCCCcCCCCchHHHhHhhhcC
Q 013723 360 PSRALGDVGWNEKG-PDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKT 437 (437)
Q Consensus 360 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~DglYrAIDiyLk~ 437 (437)
..+ ..+... .....++.+++.+||||||+||+|||+|+||||+||++|||++|++||++|||||||||||||+
T Consensus 159 ~~~-----~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~ 232 (258)
T PF03000_consen 159 EAG-----EEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKA 232 (258)
T ss_pred ccc-----cccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHH
Confidence 432 111111 2344567899999999999999999999999999999999999999999999999999999995
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=4.8e-31 Score=283.91 Aligned_cols=234 Identities=18% Similarity=0.197 Sum_probs=197.7
Q ss_pred eeccCcceeEEEEECCEEEEecCceeccCCHHHHHhhcCC-CcCCCCceeecCCCCCHHHHHHHHHHhhCceEEEecccH
Q 013723 22 YVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNV 100 (437)
Q Consensus 22 ~~~~~~~~DV~i~v~~~~F~~HK~vLas~S~yfr~lf~~~-~e~~~~~v~L~~~pgg~~~fe~~~~FcYt~~i~it~~NV 100 (437)
+|.++.+|||+|.|++++|++||.||||+|+|||+||++. +|.++.+|+|++++ +++++++++|+||+++.|+.+||
T Consensus 30 lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt~~i~i~~~nV 107 (571)
T KOG4441|consen 30 LREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYTGKLEISEDNV 107 (571)
T ss_pred HHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhcceEEechHhH
Confidence 8999999999999999999999999999999999999985 78888999999987 79999999999999999999999
Q ss_pred hhHHHhhhhhccccccccccHHHHHHHHHHhhhccchhhHHHHHhhccchHhhhHhhchhhhHHHHHHhhcccCCCCccc
Q 013723 101 VAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTW 180 (437)
Q Consensus 101 ~~l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~l~~sw~~~i~~l~~c~~l~~~Ae~~~iv~rc~~sLa~ka~~~~~~~~~ 180 (437)
+.|+.||.+|||++ |++.|++||.+++ .+.||.++..+|+.+++ ..|..+|-
T Consensus 108 q~ll~aA~~lQi~~------v~~~C~~fL~~~l---------~~~Nclgi~~~a~~~~~-----~~L~~~a~-------- 159 (571)
T KOG4441|consen 108 QELLEAASLLQIPE------VVDACCEFLESQL---------DPSNCLGIRRFAELHSC-----TELLEVAD-------- 159 (571)
T ss_pred HHHHHHHHHhhhHH------HHHHHHHHHHhcC---------CHHHHHHHHHHHHhcCc-----HHHHHHHH--------
Confidence 99999999999996 7899999999999 46799999999999884 35555552
Q ss_pred cccccCCCCCCcccccccccccccccCCCcchhhhcccCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhcCCcccc
Q 013723 181 SYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDA 260 (437)
Q Consensus 181 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~~~~~rvi~am~~~g~~~~e~I~~al~~Ya~~~l~~~~~~ 260 (437)
.|. ..+| ...+-.|||..|+.+.+..+|....... .+|+.|+++++.|+++..+.
T Consensus 160 ~~i--~~~F------------------~~v~~~eefl~L~~~~l~~ll~~d~l~v-~~E~~vf~a~~~Wv~~d~~~---- 214 (571)
T KOG4441|consen 160 EYI--LQHF------------------AEVSKTEEFLLLSLEELIGLLSSDDLNV-DSEEEVFEAAMRWVKHDFEE---- 214 (571)
T ss_pred HHH--HHHH------------------HHHhccHHhhCCCHHHHHhhccccCCCc-CCHHHHHHHHHHHHhcCHhh----
Confidence 111 1122 2334478999999999777777776553 68889999999999887651
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCCCCCccChHHHHHHhhhhhhcCCCHHHHHHHHHHHhccc
Q 013723 261 LVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKL 322 (437)
Q Consensus 261 ~~~~~~~~~~r~llE~Iv~Llp~~k~~~vs~~fL~~lLr~a~~l~~s~~cr~~LE~rIg~qL 322 (437)
+.....++++.| ++ +. ++..||.+.+.....++.+..|+..|......+|
T Consensus 215 -----R~~~~~~ll~~v-r~-----~l-l~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~ 264 (571)
T KOG4441|consen 215 -----REEHLPALLEAV-RL-----PL-LPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHL 264 (571)
T ss_pred -----HHHHHHHHHHhc-Cc-----cC-CCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhh
Confidence 123345788888 55 77 9999999999999999999999999999884444
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.96 E-value=1.5e-29 Score=272.14 Aligned_cols=227 Identities=14% Similarity=0.100 Sum_probs=178.3
Q ss_pred eeccCcceeEEEEEC-CEEEEecCceeccCCHHHHHhhcCC-CcC-CCCceeecCCCCCHHHHHHHHHHhhCceEEEecc
Q 013723 22 YVTSELATDVIINVG-EVKFYLHKFPLLSKSNRLHRLVLKA-SEE-NSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAY 98 (437)
Q Consensus 22 ~~~~~~~~DV~i~v~-~~~F~~HK~vLas~S~yfr~lf~~~-~e~-~~~~v~L~~~pgg~~~fe~~~~FcYt~~i~it~~ 98 (437)
+|.++.+|||+|.|+ |++|+|||.||||+|+|||+||+++ +|+ .+.+|+|++++ +++|+.+++|+|||+ |+.+
T Consensus 19 lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt~~--i~~~ 94 (557)
T PHA02713 19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYNRH--ISSM 94 (557)
T ss_pred HHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcCCC--CCHH
Confidence 889999999999997 8999999999999999999999986 554 36789999998 799999999999997 7899
Q ss_pred cHhhHHHhhhhhccccccccccHHHHHHHHHHhhhccchhhHHHHHhhccchHhhhHhhchhhhHHHHHHhhcccCCCCc
Q 013723 99 NVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANV 178 (437)
Q Consensus 99 NV~~l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~l~~sw~~~i~~l~~c~~l~~~Ae~~~iv~rc~~sLa~ka~~~~~~~ 178 (437)
||+.|+.||++||++. |++.|++||.+++. ..||.++..+++.++. ..|..+|.
T Consensus 95 nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l~---------~~NCl~i~~~~~~~~~-----~~L~~~a~------ 148 (557)
T PHA02713 95 NVIDVLKCADYLLIDD------LVTDCESYIKDYTN---------HDTCIYMYHRLYEMSH-----IPIVKYIK------ 148 (557)
T ss_pred HHHHHHHHHHHHCHHH------HHHHHHHHHHhhCC---------ccchHHHHHHHHhccc-----hHHHHHHH------
Confidence 9999999999999996 89999999999994 5699998887777763 22444442
Q ss_pred cccccccCCCCCCcccccccccccccccCCCcchhhhcccCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhcCCcc
Q 013723 179 TWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSI 258 (437)
Q Consensus 179 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~~~~~rvi~am~~~g~~~~e~I~~al~~Ya~~~l~~~~ 258 (437)
.|. ..+|+ ...-.|||..|+.+.+..+|.....-.+.+|+.|++++++|+++....
T Consensus 149 --~~i--~~~f~------------------~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~-- 204 (557)
T PHA02713 149 --RML--MSNIP------------------TLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYIT-- 204 (557)
T ss_pred --HHH--HHHHH------------------HHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHH--
Confidence 010 11120 001148999999999777777644222357999999999999887531
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCCCCCccChHHHHHHhhhhhhcCCCHHHHHHHHHHH
Q 013723 259 DALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRI 318 (437)
Q Consensus 259 ~~~~~~~~~~~~r~llE~Iv~Llp~~k~~~vs~~fL~~lLr~a~~l~~s~~cr~~LE~rI 318 (437)
+ ....+||+.| ++ +. ++.++++ .+.....++.++.|+..|++..
T Consensus 205 -------r-~~~~~ll~~V-R~-----~~-l~~~~~~-~~~~~~~i~~~~~c~~~l~~a~ 248 (557)
T PHA02713 205 -------E-EQLLCILSCI-DI-----QN-LDKKSRL-LLYSNKTINMYPSCIQFLLDNK 248 (557)
T ss_pred -------H-HHHhhhHhhh-hH-----hh-cchhhhh-hhcchHHHHhhHHHHHHHhhhh
Confidence 1 2233788888 55 66 7888887 5666788889999999987754
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=9.5e-28 Score=253.91 Aligned_cols=177 Identities=11% Similarity=0.095 Sum_probs=140.1
Q ss_pred eeccCcceeEEEEECCEEEEecCceeccCCHHHHHhhcCC-CcCCCCceeec--CCCCCHHHHHHHHHHhhCceEEEecc
Q 013723 22 YVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIV--DFPGGPKAFEICAKFCYGMTVTFSAY 98 (437)
Q Consensus 22 ~~~~~~~~DV~i~v~~~~F~~HK~vLas~S~yfr~lf~~~-~e~~~~~v~L~--~~pgg~~~fe~~~~FcYt~~i~it~~ 98 (437)
+|.+|.+|||+. +.|++|+|||.||||+|+|||+||+++ +|++ .+|.+. |++ +++|+.+++|+|||++.||.+
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v~--~~~l~~lldy~YTg~l~it~~ 91 (480)
T PHA02790 16 LSMTKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDLD--IHSLTSIVIYSYTGKVYIDSH 91 (480)
T ss_pred HHhhhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCcC--HHHHHHHHHhheeeeEEEecc
Confidence 678899999877 456699999999999999999999985 6664 456653 776 799999999999999999999
Q ss_pred cHhhHHHhhhhhccccccccccHHHHHHHHHHhhhccchhhHHHHHhhccchHhhhHhhchhhhHHHHHHhhcccCCCCc
Q 013723 99 NVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANV 178 (437)
Q Consensus 99 NV~~l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~l~~sw~~~i~~l~~c~~l~~~Ae~~~iv~rc~~sLa~ka~~~~~~~ 178 (437)
||+.|+.||.+|||++ |++.|++||.+++. +.||.++..+|+.|++ +.|..+|.
T Consensus 92 nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l~---------~~NCl~i~~~A~~y~~-----~~L~~~a~------ 145 (480)
T PHA02790 92 NVVNLLRASILTSVEF------IIYTCINFILRDFR---------KEYCVECYMMGIEYGL-----SNLLCHTK------ 145 (480)
T ss_pred cHHHHHHHHHHhChHH------HHHHHHHHHHhhCC---------cchHHHHHHHHHHhCH-----HHHHHHHH------
Confidence 9999999999999996 89999999999994 5699999999999984 67777763
Q ss_pred cccccccCCCCCCcccccccccccccccCCCcchhhhcccCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 013723 179 TWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVR 252 (437)
Q Consensus 179 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~~~~~rvi~am~~~g~~~~e~I~~al~~Ya~~ 252 (437)
.|. ..+|.. +.++ -+|||..|++ ..+|...... +.+|+.|++++++|+++
T Consensus 146 --~fi--~~nF~~---------------v~~~-~~~ef~~L~~---~~lLssd~L~-v~~Ee~V~eav~~Wl~~ 195 (480)
T PHA02790 146 --DFI--AKHFLE---------------LEDD-IIDNFDYLSM---KLILESDELN-VPDEDYVVDFVIKWYMK 195 (480)
T ss_pred --HHH--HHhHHH---------------Hhcc-cchhhhhCCH---HHhcccccCC-CccHHHHHHHHHHHHHh
Confidence 111 112210 0000 0378989986 3455555443 25788999999999986
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=7.9e-26 Score=241.24 Aligned_cols=224 Identities=15% Similarity=0.097 Sum_probs=175.0
Q ss_pred cCcceeEEEEE--CCEEEEecCceeccCCHHHHHhhcCCCcCCCCceeecCCCCCHHHHHHHHHHhhCceEEEecccHhh
Q 013723 25 SELATDVIINV--GEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVA 102 (437)
Q Consensus 25 ~~~~~DV~i~v--~~~~F~~HK~vLas~S~yfr~lf~~~~e~~~~~v~L~~~pgg~~~fe~~~~FcYt~~i~it~~NV~~ 102 (437)
+|.+|||+|.+ +|++|++||.+|+++|+|||+||++... +.+|+|++ + +++|+.+++|+|||+++|+.+||..
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-D--YDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHHH
Confidence 78899999998 9999999999999999999999998633 56899988 6 7999999999999999999999999
Q ss_pred HHHhhhhhccccccccccHHHHHHHHHHhhhccchhhHHHHHhhccchHhhhHhhchhhhHHHHHHhhcccCCCCccccc
Q 013723 103 ARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSY 182 (437)
Q Consensus 103 l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~l~~sw~~~i~~l~~c~~l~~~Ae~~~iv~rc~~sLa~ka~~~~~~~~~s~ 182 (437)
|+.||++||+++ |+..|++||.+.+ ...||.+++.+|+.+++ ..|...+- .|
T Consensus 81 ll~~A~~l~~~~------l~~~C~~~l~~~l---------~~~nc~~~~~~a~~~~~-----~~L~~~~~--------~~ 132 (534)
T PHA03098 81 ILSIANYLIIDF------LINLCINYIIKII---------DDNNCIDIYRFSFFYGC-----KKLYSAAY--------NY 132 (534)
T ss_pred HHHHHHHhCcHH------HHHHHHHHHHHhC---------CHhHHHHHHHHHHHcCc-----HHHHHHHH--------HH
Confidence 999999999996 8999999999998 46799999999999984 34433331 00
Q ss_pred cccCCCCCCcccccccccccccccCCCcchhhhcccCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhcCCcccccc
Q 013723 183 TYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALV 262 (437)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~~~~~rvi~am~~~g~~~~e~I~~al~~Ya~~~l~~~~~~~~ 262 (437)
. ..+|. ...+ .+||..|+.+.++.+++.-... +.+|+.|+++++.|+++....
T Consensus 133 i--~~nf~---------~v~~---------~~~f~~l~~~~l~~ll~~~~L~-v~~E~~v~~av~~W~~~~~~~------ 185 (534)
T PHA03098 133 I--RNNIE---------LIYN---------DPDFIYLSKNELIKILSDDKLN-VSSEDVVLEIIIKWLTSKKNN------ 185 (534)
T ss_pred H--HHHHH---------HHhc---------CchhhcCCHHHHHHHhcCCCcC-cCCHHHHHHHHHHHHhcChhh------
Confidence 0 00110 0001 4689999999977777665443 257889999999999876431
Q ss_pred chhhHHHHHHHHHHHHHhcCCCCCCccChHHHHHHhh------hhhhcCCCHHHHHHHHHHHh
Q 013723 263 SDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLK------VSVLVGVDNSAREDLVKRIS 319 (437)
Q Consensus 263 ~~~~~~~~r~llE~Iv~Llp~~k~~~vs~~fL~~lLr------~a~~l~~s~~cr~~LE~rIg 319 (437)
+.....+|++.| ++ +. ++..+|..+.+ ...++ .+..|+..++....
T Consensus 186 ---r~~~~~~ll~~v-R~-----~~-~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 237 (534)
T PHA03098 186 ---KYKDICLILKVL-RI-----TF-LSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKKY 237 (534)
T ss_pred ---hHhHHHHHHhhc-cc-----cc-cCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHHh
Confidence 112334788888 55 77 99999999876 44445 77789988776554
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.73 E-value=6e-18 Score=142.76 Aligned_cols=103 Identities=30% Similarity=0.391 Sum_probs=90.2
Q ss_pred eeccCcceeEEEEEC-CEEEEecCceeccCCHHHHHhhcCC--CcCCCCceeecCCCCCHHHHHHHHHHhhCceEEEe-c
Q 013723 22 YVTSELATDVIINVG-EVKFYLHKFPLLSKSNRLHRLVLKA--SEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFS-A 97 (437)
Q Consensus 22 ~~~~~~~~DV~i~v~-~~~F~~HK~vLas~S~yfr~lf~~~--~e~~~~~v~L~~~pgg~~~fe~~~~FcYt~~i~it-~ 97 (437)
++.++.+||++|.++ +.+|++||.+|+++|+||++||... .+....++.+++++ +++|+.+++|+|++++.++ .
T Consensus 4 ~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 4 LFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-T
T ss_pred HHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHH
Confidence 456789999999999 8999999999999999999999987 23333478889998 7999999999999999999 9
Q ss_pred ccHhhHHHhhhhhccccccccccHHHHHHHHHHhh
Q 013723 98 YNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSS 132 (437)
Q Consensus 98 ~NV~~l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~ 132 (437)
+|+..++.+|.+|+|++ |.+.|++||.+.
T Consensus 82 ~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 99999999999999995 899999999875
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.63 E-value=5.1e-16 Score=123.78 Aligned_cols=89 Identities=28% Similarity=0.343 Sum_probs=80.0
Q ss_pred eEEEEECCEEEEecCceeccCCHHHHHhhcCC-CcCCCCceeecCCCCCHHHHHHHHHHhhCceEEEecccHhhHHHhhh
Q 013723 30 DVIINVGEVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAE 108 (437)
Q Consensus 30 DV~i~v~~~~F~~HK~vLas~S~yfr~lf~~~-~e~~~~~v~L~~~pgg~~~fe~~~~FcYt~~i~it~~NV~~l~~AA~ 108 (437)
||++.+||++|++||.+|+++|+||++||.+. .+.....+.+.+++ +++|+.+++|+||+++.++..|+..++.+|.
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 78999999999999999999999999999975 34456788898876 7999999999999999999999999999999
Q ss_pred hhccccccccccHHHHHH
Q 013723 109 YLEMTEDVDKKNLIFKLE 126 (437)
Q Consensus 109 ~Lqm~e~~~~~nL~~~c~ 126 (437)
+++|++ |+..|+
T Consensus 79 ~~~~~~------l~~~c~ 90 (90)
T smart00225 79 YLQIPG------LVELCE 90 (90)
T ss_pred HHCcHH------HHhhhC
Confidence 999986 666663
No 8
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.49 E-value=9.6e-14 Score=140.00 Aligned_cols=215 Identities=15% Similarity=0.148 Sum_probs=150.9
Q ss_pred eeeccCcceeEEEEECCEEEEecCceeccCCHHHHHhhcCC-CcCCCCceeecCCCCCHHHHHHHHHHhhCceEEEeccc
Q 013723 21 RYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYN 99 (437)
Q Consensus 21 ~~~~~~~~~DV~i~v~~~~F~~HK~vLas~S~yfr~lf~~~-~e~~~~~v~L~~~pgg~~~fe~~~~FcYt~~i~it~~N 99 (437)
.+.......||++.|+++.|++||.+||++|.|||+|+-.+ .|+.+..|.|++-. +++|..+++|+|||++.++...
T Consensus 37 ~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~--~eAF~~lLrYiYtg~~~l~~~~ 114 (620)
T KOG4350|consen 37 ELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETN--SEAFRALLRYIYTGKIDLAGVE 114 (620)
T ss_pred HHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccccc--HHHHHHHHHHHhhcceecccch
Confidence 36777889999999999999999999999999999998765 78778889998743 7999999999999999987643
Q ss_pred ---HhhHHHhhhhhccccccccccHHHHHHHHHHhhhccchhhHHHHHhhccchHhhhHhhchhhhHHHHHHhhcccCCC
Q 013723 100 ---VVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPA 176 (437)
Q Consensus 100 ---V~~l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~l~~sw~~~i~~l~~c~~l~~~Ae~~~iv~rc~~sLa~ka~~~~~ 176 (437)
....+.-|...++. .|-....+||.+.+ .++|-..+...|.-|++ ..|-..++.
T Consensus 115 ed~lld~LslAh~Ygf~------~Le~aiSeYl~~iL---------~~~NvCmifdaA~ly~l-----~~Lt~~C~m--- 171 (620)
T KOG4350|consen 115 EDILLDYLSLAHRYGFI------QLETAISEYLKEIL---------KNENVCMIFDAAYLYQL-----TDLTDYCMM--- 171 (620)
T ss_pred HHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHH---------cccceeeeeeHHHHhcc-----hHHHHHHHH---
Confidence 34455555555665 48889999999988 55664456666766664 333333331
Q ss_pred CccccccccCCCCCCcccccccccccccccCCCcchhhhcccCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhcCC
Q 013723 177 NVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPD 256 (437)
Q Consensus 177 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~~~~~rvi~am~~~g~~~~e~I~~al~~Ya~~~l~~ 256 (437)
|+. + + . .+.--.+-|..|+-+.++.++.-..= ..+|..|+-||..|.++.-.
T Consensus 172 -----fmD-r-n-----A-------------~~lL~~~sFn~LSk~sL~e~l~RDsF--fApE~~IFlAv~~W~~~Nsk- 223 (620)
T KOG4350|consen 172 -----FMD-R-N-----A-------------DQLLEDPSFNRLSKDSLKELLARDSF--FAPELKIFLAVRSWHQNNSK- 223 (620)
T ss_pred -----HHh-c-C-----H-------------HhhhcCcchhhhhHHHHHHHHhhhcc--cchHHHHHHHHHHHHhcCch-
Confidence 110 0 0 0 00000234667888877666654432 25778999999999765432
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCCCCCccChHHHHHHhhhhhhcCC
Q 013723 257 SIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGV 306 (437)
Q Consensus 257 ~~~~~~~~~~~~~~r~llE~Iv~Llp~~k~~~vs~~fL~~lLr~a~~l~~ 306 (437)
...+.++|.| +| +. ++..-|+..+|-.-++..
T Consensus 224 -----------e~~k~~~~~V-RL-----PL-m~lteLLnvVRPsGllsp 255 (620)
T KOG4350|consen 224 -----------EASKVLLELV-RL-----PL-MTLTELLNVVRPSGLLSP 255 (620)
T ss_pred -----------hhHHHHHHHH-hh-----hh-ccHHHHHhccCcccCcCH
Confidence 3356788877 66 67 777777777777665544
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.32 E-value=6.6e-12 Score=129.33 Aligned_cols=182 Identities=22% Similarity=0.227 Sum_probs=140.9
Q ss_pred eeccCcceeEEEEECC-----EEEEecCceeccCCHHHHHhhcCC-CcCCCCceeecCCCCCHHHHHHHHHHhhCceEEE
Q 013723 22 YVTSELATDVIINVGE-----VKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTF 95 (437)
Q Consensus 22 ~~~~~~~~DV~i~v~~-----~~F~~HK~vLas~S~yfr~lf~~~-~e~~~~~v~L~~~pgg~~~fe~~~~FcYt~~i~i 95 (437)
+..+...+|+++.||+ +.||+||.+||..|.-|.+||..+ .+....+|+++|+. |.+|...++|+|+-.+.+
T Consensus 108 l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~flYsdev~~ 185 (521)
T KOG2075|consen 108 LFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLRFLYSDEVKL 185 (521)
T ss_pred hccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHHHHhcchhhh
Confidence 6667899999999984 689999999999999999999986 34446799999998 799999999999999999
Q ss_pred ecccHhhHHHhhhhhccccccccccHHHHHHHHHHhhhccchhhHHHHHhhccchHhhhHhhchhhhHHHHHHhhcccCC
Q 013723 96 SAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDP 175 (437)
Q Consensus 96 t~~NV~~l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~l~~sw~~~i~~l~~c~~l~~~Ae~~~iv~rc~~sLa~ka~~~~ 175 (437)
.++||..++.||.-.-++. |...|.+||+..+..- +.+..|-+| ..+.++..++++|++.|....- +
T Consensus 186 ~~dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~~~--naf~~L~q~---A~lf~ep~Li~~c~e~id~~~~-~- 252 (521)
T KOG2075|consen 186 AADTVITTLYAAKKYLVPA------LERQCVKFLRKNLMAD--NAFLELFQR---AKLFDEPSLISICLEVIDKSFE-D- 252 (521)
T ss_pred hHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcCCh--HHHHHHHHH---HHhhcCHHHHHHHHHHhhhHHH-h-
Confidence 9999999999998777774 8999999999988653 444455555 3456777899999988864432 0
Q ss_pred CCccccccccCCCCCCcccccccccccccccCCCcchhhhcccCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 013723 176 ANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVR 252 (437)
Q Consensus 176 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~~~~~rvi~am~~~g~~~~e~I~~al~~Ya~~ 252 (437)
.. . .=||-|+-.+ .+.|+.|++.-... .++-.+++++.+|++-
T Consensus 253 ------------al------------------~-~EGf~did~~-~dt~~evl~r~~l~--~~e~~lfeA~lkw~~~ 295 (521)
T KOG2075|consen 253 ------------AL------------------T-PEGFCDIDST-RDTYEEVLRRDTLE--AREFRLFEAALKWAEA 295 (521)
T ss_pred ------------hh------------------C-ccceeehhhH-HHHHHHHHhhcccc--hhHHHHHHHHHhhccC
Confidence 00 0 0123344333 88877776655443 5788999999999863
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.12 E-value=7e-11 Score=109.95 Aligned_cols=132 Identities=19% Similarity=0.278 Sum_probs=108.6
Q ss_pred cCCCCcceec----CcceeeeccCcceeEEEEEC---CEEEEecCceeccCCHHHHHhhcCCCcCCCCceeecCCCCCHH
Q 013723 7 GSKPDTFQTD----GKCIRYVTSELATDVIINVG---EVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPK 79 (437)
Q Consensus 7 ~~~~~~~~~~----~~~~~~~~~~~~~DV~i~v~---~~~F~~HK~vLas~S~yfr~lf~~~~e~~~~~v~L~~~pgg~~ 79 (437)
.|.||+|-.+ ..+ +.....++|+++.++ ++.+++||+|||++|++.+ |.++.+.+..+..+.|.. ++
T Consensus 43 eSs~dSF~SRLLaitad--L~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad--~E 116 (280)
T KOG4591|consen 43 ESSPDSFISRLLAITAD--LLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDAD--FE 116 (280)
T ss_pred cCCchhHHHHHHHHHHH--HhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccC--HH
Confidence 4678999766 222 778889999999998 5789999999999999765 455444444567778876 79
Q ss_pred HHHHHHHHhhCceEEEecccH--hhHHHhhhhhccccccccccHHHHHHHHHHhhhccchhhHHHHHhhccchHhhhHhh
Q 013723 80 AFEICAKFCYGMTVTFSAYNV--VAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDL 157 (437)
Q Consensus 80 ~fe~~~~FcYt~~i~it~~NV--~~l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~l~~sw~~~i~~l~~c~~l~~~Ae~~ 157 (437)
+|..+++++||.+|++..+.+ ..++..|..+|..- |.++|+.=+-..+ ...||..+..+||++
T Consensus 117 a~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~ 181 (280)
T KOG4591|consen 117 AFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALL---------HVDNCIKFYEFAEEL 181 (280)
T ss_pred HHHHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHh
Confidence 999999999999999988765 45888999999984 8999999988877 678999999999998
Q ss_pred ch
Q 013723 158 KI 159 (437)
Q Consensus 158 ~i 159 (437)
+.
T Consensus 182 n~ 183 (280)
T KOG4591|consen 182 NA 183 (280)
T ss_pred hH
Confidence 73
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.68 E-value=5.6e-08 Score=98.81 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=101.1
Q ss_pred eccCcceeEEEEECCEEEEecCceeccCCHHHHHhhcCC-CcCCCCceee--cCCCCCHHHHHHHHHHhhCceEEEeccc
Q 013723 23 VTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNI--VDFPGGPKAFEICAKFCYGMTVTFSAYN 99 (437)
Q Consensus 23 ~~~~~~~DV~i~v~~~~F~~HK~vLas~S~yfr~lf~~~-~e~~~~~v~L--~~~pgg~~~fe~~~~FcYt~~i~it~~N 99 (437)
-.+|.-+||+|.+-|.+-++||.-| ..|+||..||... +|++...|.| .|-.....+|..++.=.|..+|+|..+.
T Consensus 64 f~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~d 142 (488)
T KOG4682|consen 64 FLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSD 142 (488)
T ss_pred HhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHH
Confidence 3467789999999999999999876 4699999999986 6766665544 4433347999999999999999999999
Q ss_pred HhhHHHhhhhhccccccccccHHHHHHHHHHhhhccchhhHHHHHhhccchHhhhHhhch
Q 013723 100 VVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKI 159 (437)
Q Consensus 100 V~~l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~l~~sw~~~i~~l~~c~~l~~~Ae~~~i 159 (437)
|..++.||.+||++. |+++|.+-+.+.+.+ ++-.+....+..||+
T Consensus 143 v~gvlAaA~~lqldg------l~qrC~evMie~lsp---------kta~~yYea~ckYgl 187 (488)
T KOG4682|consen 143 VVGVLAAACLLQLDG------LIQRCGEVMIETLSP---------KTACGYYEAACKYGL 187 (488)
T ss_pred HHHHHHHHHHHHHhh------HHHHHHHHHHHhcCh---------hhhhHhhhhhhhhhh
Confidence 999999999999994 899999999999954 466666777777764
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.42 E-value=2.6e-07 Score=100.59 Aligned_cols=126 Identities=18% Similarity=0.156 Sum_probs=95.6
Q ss_pred ceeEEEEECCEEEEecCceeccCCHHHHHhhcCC-CcCCCCceeecCCCCCHHHHHHHHHHhhC-ceEEEe-----cccH
Q 013723 28 ATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIVDFPGGPKAFEICAKFCYG-MTVTFS-----AYNV 100 (437)
Q Consensus 28 ~~DV~i~v~~~~F~~HK~vLas~S~yfr~lf~~~-~e~~~~~v~L~~~pgg~~~fe~~~~FcYt-~~i~it-----~~NV 100 (437)
.|||++. +|+.|+|||.+|++++.||..||... .|... +...+.|-.+|.|+.+++|.|+ -+.++- .+=+
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 3444444 88899999999999999999999874 45444 4444555558999999999994 343321 2225
Q ss_pred hhHHHhhhhhccccccccccHHHHHHHHHHhhhccchhhHHHHHhhccchHhhhHhhc---hhhhHHHHHHhhc
Q 013723 101 VAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLK---IIGRSVDSIASKT 171 (437)
Q Consensus 101 ~~l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~l~~sw~~~i~~l~~c~~l~~~Ae~~~---iv~rc~~sLa~ka 171 (437)
..++..|+.|=+.+ |...|+.-|.+.+ .+++|..++.+|..|+ +-.+|++-|....
T Consensus 789 ~~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~N~ 847 (1267)
T KOG0783|consen 789 FEILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICHNI 847 (1267)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHHhH
Confidence 66888888888886 8899999999888 7899999999998885 5677877665443
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.23 E-value=1.6e-06 Score=94.62 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=54.2
Q ss_pred CcceeEEEEECCEEEEecCceeccCCHHHHHhhcCCCcC-------------CCCceeecCCCCCHHHHHHHHHHhhCce
Q 013723 26 ELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKASEE-------------NSDEMNIVDFPGGPKAFEICAKFCYGMT 92 (437)
Q Consensus 26 ~~~~DV~i~v~~~~F~~HK~vLas~S~yfr~lf~~~~e~-------------~~~~v~L~~~pgg~~~fe~~~~FcYt~~ 92 (437)
+-..|||+.||+..|++||++|+++|++||++|.....+ ....+.+.++| |.+||+++.|+||.+
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc
Confidence 456799999999999999999999999999999863211 12356678998 699999999999974
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.80 E-value=1.6e-05 Score=79.79 Aligned_cols=86 Identities=16% Similarity=0.262 Sum_probs=72.4
Q ss_pred EEEEecCceeccCCHHHHHhhcC----CCcCCCCceeec-CCCCCHHHHHHHHHHhhCceEEEecccHhhHHHhhhhhcc
Q 013723 38 VKFYLHKFPLLSKSNRLHRLVLK----ASEENSDEMNIV-DFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEM 112 (437)
Q Consensus 38 ~~F~~HK~vLas~S~yfr~lf~~----~~e~~~~~v~L~-~~pgg~~~fe~~~~FcYt~~i~it~~NV~~l~~AA~~Lqm 112 (437)
+.|.|.+.+|.+.=+||+..+.. ..+...-.|..| |+ .+|+-+++|+.+....||++||..++-.++||||
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M 89 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQM 89 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhcc
Confidence 68999999999999999999954 222222334444 66 6999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHhhh
Q 013723 113 TEDVDKKNLIFKLEVFLNSSI 133 (437)
Q Consensus 113 ~e~~~~~nL~~~c~~FL~~~l 133 (437)
++ |++.|-.|+..++
T Consensus 90 ~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 90 ES------LVEECLQYCHDHM 104 (317)
T ss_pred HH------HHHHHHHHHHHhH
Confidence 96 8999999987766
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.89 E-value=0.0013 Score=55.70 Aligned_cols=79 Identities=13% Similarity=0.262 Sum_probs=60.0
Q ss_pred EEEEE-CCEEEEecCceeccCCHHHHHhhcCCC-c-CCCCceeecCCCCCHHHHHHHHHHhhCce-----------E---
Q 013723 31 VIINV-GEVKFYLHKFPLLSKSNRLHRLVLKAS-E-ENSDEMNIVDFPGGPKAFEICAKFCYGMT-----------V--- 93 (437)
Q Consensus 31 V~i~v-~~~~F~~HK~vLas~S~yfr~lf~~~~-e-~~~~~v~L~~~pgg~~~fe~~~~FcYt~~-----------i--- 93 (437)
|+++- +|+.|.+.+.+. ..|+-++.|+.+.. + .+...|.|++++ +.+++.+++||+--+ +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55554 889999999855 68999999998642 2 222579999998 599999999998321 1
Q ss_pred -----EEecccHhhHHHhhhhhcc
Q 013723 94 -----TFSAYNVVAARCAAEYLEM 112 (437)
Q Consensus 94 -----~it~~NV~~l~~AA~~Lqm 112 (437)
.+..+++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1555678889999999985
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.62 E-value=0.0012 Score=54.52 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=60.5
Q ss_pred EEEEECCEEEEecCceec-cCCHHHHHhhcCC----CcCCCCceeecCCCCCHHHHHHHHHHhhC-ceEEEe-cccHhhH
Q 013723 31 VIINVGEVKFYLHKFPLL-SKSNRLHRLVLKA----SEENSDEMNIVDFPGGPKAFEICAKFCYG-MTVTFS-AYNVVAA 103 (437)
Q Consensus 31 V~i~v~~~~F~~HK~vLa-s~S~yfr~lf~~~----~e~~~~~v~L~~~pgg~~~fe~~~~FcYt-~~i~it-~~NV~~l 103 (437)
|++.|||+.|..-+..|. ....+|.+|+... ...+...+-|. ..|+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 689999999999999998 4467999999853 12233455553 237999999999999 777764 5678889
Q ss_pred HHhhhhhcccc
Q 013723 104 RCAAEYLEMTE 114 (437)
Q Consensus 104 ~~AA~~Lqm~e 114 (437)
+.-|+|.++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999986
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.011 Score=57.34 Aligned_cols=94 Identities=21% Similarity=0.202 Sum_probs=74.8
Q ss_pred EEEEECCEEEEecCceeccCCHHHHHhhcCCC--cCC-CCceeecCCCCCHHHHHHHHHHhhCceEEE--ecccHhhHHH
Q 013723 31 VIINVGEVKFYLHKFPLLSKSNRLHRLVLKAS--EEN-SDEMNIVDFPGGPKAFEICAKFCYGMTVTF--SAYNVVAARC 105 (437)
Q Consensus 31 V~i~v~~~~F~~HK~vLas~S~yfr~lf~~~~--e~~-~~~v~L~~~pgg~~~fe~~~~FcYt~~i~i--t~~NV~~l~~ 105 (437)
|.+.|||..|..+|.-|--..++|+.|+...- +.+ ...|-|. -.|.=|++|++|+=.|.+.+ +..++.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID---RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID---RSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec---CChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 55899999999999999999999999999752 222 2234443 23689999999999887776 4466779999
Q ss_pred hhhhhccccccccccHHHHHHHHHHhhh
Q 013723 106 AAEYLEMTEDVDKKNLIFKLEVFLNSSI 133 (437)
Q Consensus 106 AA~~Lqm~e~~~~~nL~~~c~~FL~~~l 133 (437)
=|+|..+++ |++.|..=+....
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhhcc
Confidence 999999995 8999998776654
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.12 E-value=0.013 Score=49.14 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=60.9
Q ss_pred EEEEE-CCEEEEecCceeccCCHHHHHhhcCC---CcCCCCceeecCCCCCHHHHHHHHHHh-----hCc------eEEE
Q 013723 31 VIINV-GEVKFYLHKFPLLSKSNRLHRLVLKA---SEENSDEMNIVDFPGGPKAFEICAKFC-----YGM------TVTF 95 (437)
Q Consensus 31 V~i~v-~~~~F~~HK~vLas~S~yfr~lf~~~---~e~~~~~v~L~~~pgg~~~fe~~~~Fc-----Yt~------~i~i 95 (437)
|.+.- +|++|-.-|. .|--|+-+|+|+.+. .+....+|.+.+|| +..++.+..|. |++ +++|
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 34433 7788988665 677899999999963 35556789999999 79999999875 443 2457
Q ss_pred ecccHhhHHHhhhhhc
Q 013723 96 SAYNVVAARCAAEYLE 111 (437)
Q Consensus 96 t~~NV~~l~~AA~~Lq 111 (437)
-++=+..|+.||+||+
T Consensus 96 ppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 96 PPEMALELLMAANYLE 111 (112)
T ss_pred CHHHHHHHHHHhhhhc
Confidence 7888899999999996
No 19
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=95.70 E-value=0.03 Score=43.05 Aligned_cols=55 Identities=9% Similarity=0.262 Sum_probs=42.9
Q ss_pred EEEEE-CCEEEEecCceeccCCHHHHHhhcCCCcCCCCceeecCCCCCHHHHHHHHHHhh
Q 013723 31 VIINV-GEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKAFEICAKFCY 89 (437)
Q Consensus 31 V~i~v-~~~~F~~HK~vLas~S~yfr~lf~~~~e~~~~~v~L~~~pgg~~~fe~~~~FcY 89 (437)
|+++- +|+.|.+.+.+ |-.|+.++.|+........ .|.|++++ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~-a~~S~~i~~ml~~~~~~~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREA-AKQSKTIKNMLEDLGDEDE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHH-HTTSHHHHHHHHCTCCCGT-EEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhhhccccc-ccccCccC--HHHHHHHHHHHH
Confidence 45555 88999998875 5579999999987533222 79999998 599999999997
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=95.57 E-value=0.005 Score=60.61 Aligned_cols=99 Identities=16% Similarity=0.064 Sum_probs=71.4
Q ss_pred CcceecCcceeeeccCcceeEEEEECCEEEEecCceeccCCHHHHHhhcCCCcCC---CCceeecCCCCCHHHHHHHHHH
Q 013723 11 DTFQTDGKCIRYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKASEEN---SDEMNIVDFPGGPKAFEICAKF 87 (437)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~DV~i~v~~~~F~~HK~vLas~S~yfr~lf~~~~e~~---~~~v~L~~~pgg~~~fe~~~~F 87 (437)
.+|+++=-. ........||-|......|++||+.|+++|++|+-+.+...+.+ ...++.-+|. -++|+..++|
T Consensus 115 ~sf~kD~ad--~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~ 190 (401)
T KOG2838|consen 115 NSFLKDFAD--GYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHS 190 (401)
T ss_pred hHHHHHHhh--hhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHH
Confidence 456655321 34456778999999999999999999999999999888764433 2456667776 5899999999
Q ss_pred hhCceEE---EecccHhhHHHhhhhhccc
Q 013723 88 CYGMTVT---FSAYNVVAARCAAEYLEMT 113 (437)
Q Consensus 88 cYt~~i~---it~~NV~~l~~AA~~Lqm~ 113 (437)
.|+|+.- +.-.|+..|-.-.+-++-.
T Consensus 191 l~tgEfgmEd~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 191 LITGEFGMEDLGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred HHhcccchhhcCCchHHHHHHHHHhhCCc
Confidence 9998653 3335666555555544544
No 21
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=94.66 E-value=0.0053 Score=50.74 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=46.4
Q ss_pred hhhcccCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHhcCCCCCCccChH
Q 013723 213 VEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCS 292 (437)
Q Consensus 213 ~EDl~~L~~~~~~rvi~am~~~g~~~~e~I~~al~~Ya~~~l~~~~~~~~~~~~~~~~r~llE~Iv~Llp~~k~~~vs~~ 292 (437)
.++|..||.+.+..++..-.-. ..+|..|+++++.|+++.... +......|++.| ++ +. +|.+
T Consensus 34 ~~~f~~L~~~~l~~iL~~~~l~-v~~E~~v~~av~~W~~~~~~~---------r~~~~~~Ll~~i-R~-----~~-l~~~ 96 (103)
T PF07707_consen 34 SDEFLELPFDQLIEILSSDDLN-VSSEDDVFEAVLRWLKHNPEN---------REEHLKELLSCI-RF-----PL-LSPE 96 (103)
T ss_dssp SHHHHCS-HHHHHHHHHTSS---ECTCCCHHHHHHHHHHCTHHH---------HTTTHHHHHCCC-HH-----HC-T-HH
T ss_pred chhhhcCCHHHHHHHHhccccc-cccHHHHHHHHHHHHHhCHHH---------HHHHHHHHHHhC-Cc-----cc-CCHH
Confidence 4689999999977776654322 257889999999999876431 123345788877 43 66 8988
Q ss_pred HHHHHh
Q 013723 293 FLLKLL 298 (437)
Q Consensus 293 fL~~lL 298 (437)
+|...+
T Consensus 97 ~L~~~v 102 (103)
T PF07707_consen 97 ELQNVV 102 (103)
T ss_dssp HHHHCC
T ss_pred HHHHHH
Confidence 887754
No 22
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.067 Score=49.31 Aligned_cols=90 Identities=12% Similarity=0.171 Sum_probs=69.2
Q ss_pred CCEEEEecCceeccCCHHHHHhhcCCC-cCCCCceeecCCCCCHHHHHHHHHHhhCceE---------------------
Q 013723 36 GEVKFYLHKFPLLSKSNRLHRLVLKAS-EENSDEMNIVDFPGGPKAFEICAKFCYGMTV--------------------- 93 (437)
Q Consensus 36 ~~~~F~~HK~vLas~S~yfr~lf~~~~-e~~~~~v~L~~~pgg~~~fe~~~~FcYt~~i--------------------- 93 (437)
+|+.|.+-.. .|..|.-++.++.+.. ..+...|.|++|. +.+|.+|++|||--+-
T Consensus 13 DG~~f~ve~~-~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEE-VARQSQTISAHMIEDGCADENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHH-HHHHhHHHHHHHHHcCCCccCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 7888988766 5667899999888641 1111478899988 5999999999996321
Q ss_pred ----EEecccHhhHHHhhhhhccccccccccHHHHHHHHHHhhhc
Q 013723 94 ----TFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIF 134 (437)
Q Consensus 94 ----~it~~NV~~l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~l~ 134 (437)
.+...++..|.-||.||+|+ +|++.||......+.
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~------gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIK------GLLDLTCKTVANMIK 128 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccH------HHHHHHHHHHHHHHc
Confidence 13445788999999999999 489999999888763
No 23
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=92.09 E-value=0.22 Score=40.42 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=44.9
Q ss_pred hhcccCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHhcCCCCCCccChHH
Q 013723 214 EDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSF 293 (437)
Q Consensus 214 EDl~~L~~~~~~rvi~am~~~g~~~~e~I~~al~~Ya~~~l~~~~~~~~~~~~~~~~r~llE~Iv~Llp~~k~~~vs~~f 293 (437)
++|..||.+.+..++..-.-.. .+|..++++++.|+++... .. .....+++.| ++ +. +|..+
T Consensus 35 ~~f~~L~~~~l~~iL~~d~l~v-~~E~~v~~av~~W~~~~~~---------~~-~~~~~ll~~i-r~-----~~-~~~~~ 96 (101)
T smart00875 35 EEFLELSLEQLLSLLSSDDLNV-PSEEEVFEAVLRWVKHDPE---------RR-RHLPELLSHV-RF-----PL-LSPEY 96 (101)
T ss_pred cHHhcCCHHHHHHHhCcccCCC-CCHHHHHHHHHHHHHCCHH---------HH-HHHHHHHHhC-CC-----CC-CCHHH
Confidence 6899999999877776655432 4688999999999876531 01 1234677777 43 56 88877
Q ss_pred HHH
Q 013723 294 LLK 296 (437)
Q Consensus 294 L~~ 296 (437)
|.+
T Consensus 97 l~~ 99 (101)
T smart00875 97 LLE 99 (101)
T ss_pred HHh
Confidence 755
No 24
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=88.38 E-value=0.16 Score=50.35 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=40.0
Q ss_pred EEEEecCceeccCCHHHHHhhcC----CCc------CCCCceeecCCCCCHHHHHH-HHHHhhCceEEEe
Q 013723 38 VKFYLHKFPLLSKSNRLHRLVLK----ASE------ENSDEMNIVDFPGGPKAFEI-CAKFCYGMTVTFS 96 (437)
Q Consensus 38 ~~F~~HK~vLas~S~yfr~lf~~----~~e------~~~~~v~L~~~pgg~~~fe~-~~~FcYt~~i~it 96 (437)
.++.|||++.+++|++||.++.. ..| ....+|.+...- -|.+|.. ++.|+||-.++++
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I-~PkafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELI-FPKAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhh-cchhhhhhhhhhheecccchh
Confidence 36789999999999999998753 222 123567775421 1467764 5789999887764
No 25
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=84.89 E-value=4.1 Score=41.22 Aligned_cols=90 Identities=20% Similarity=0.278 Sum_probs=65.7
Q ss_pred eccCcceeEEEEECCEEEEecCceeccCCH-HHHHhhcCC----CcCCCCceeec-CCCCCHHHHHHHHHHhhCceEEEe
Q 013723 23 VTSELATDVIINVGEVKFYLHKFPLLSKSN-RLHRLVLKA----SEENSDEMNIV-DFPGGPKAFEICAKFCYGMTVTFS 96 (437)
Q Consensus 23 ~~~~~~~DV~i~v~~~~F~~HK~vLas~S~-yfr~lf~~~----~e~~~~~v~L~-~~pgg~~~fe~~~~FcYt~~i~it 96 (437)
+..|..--++..|++..|-.-+++|-+.-. -+-.||..+ +..+..+.+.. |+. ...|..|++|--+|.|.--
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~--s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMT--SSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchh--HHHHHHHHHHHhcCceeCC
Confidence 344555567889999999999998887632 344666643 22334567764 564 7899999999888888754
Q ss_pred c-ccHhhHHHhhhhhcccc
Q 013723 97 A-YNVVAARCAAEYLEMTE 114 (437)
Q Consensus 97 ~-~NV~~l~~AA~~Lqm~e 114 (437)
+ -.|.+|+.|.+||-++=
T Consensus 168 ~~vSvpELrEACDYLlipF 186 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPF 186 (438)
T ss_pred CCCchHHHHhhcceEEeec
Confidence 3 56888999999998873
No 26
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=83.79 E-value=1.3 Score=46.01 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=56.6
Q ss_pred EEEEecCceeccCCHHHHHhhcCC-CcC--CCC--ceeecCCCCCHHHHHHHHHHhhCceEEEecccHhhHHHhhhhhcc
Q 013723 38 VKFYLHKFPLLSKSNRLHRLVLKA-SEE--NSD--EMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEM 112 (437)
Q Consensus 38 ~~F~~HK~vLas~S~yfr~lf~~~-~e~--~~~--~v~L~~~pgg~~~fe~~~~FcYt~~i~it~~NV~~l~~AA~~Lqm 112 (437)
..+|||++++. +..||+.||++. .|+ ++. ...|+++. ....|++++|.|+-+.+|-++-...++--|..|-+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 45999999875 568999999986 442 222 23344443 57899999999999999988888888888888877
Q ss_pred ccc
Q 013723 113 TED 115 (437)
Q Consensus 113 ~e~ 115 (437)
..+
T Consensus 378 ~~d 380 (516)
T KOG0511|consen 378 ADD 380 (516)
T ss_pred hhh
Confidence 643
No 27
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=81.57 E-value=2.4 Score=44.58 Aligned_cols=81 Identities=17% Similarity=0.107 Sum_probs=58.8
Q ss_pred EEEEECCEEEEecCceeccCC--HHHHHhhcCC--CcCCC-CceeecCCCCCHHHHHHHHHHhhCceEEEecccHhh-HH
Q 013723 31 VIINVGEVKFYLHKFPLLSKS--NRLHRLVLKA--SEENS-DEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVA-AR 104 (437)
Q Consensus 31 V~i~v~~~~F~~HK~vLas~S--~yfr~lf~~~--~e~~~-~~v~L~~~pgg~~~fe~~~~FcYt~~i~it~~NV~~-l~ 104 (437)
|.+.|||+.|.--+.-|+... .+|.+|++.. ..... .-|-| +-+|+.|..+++|.-|+++.+..--... ++
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 678999999999998887765 6999999743 11111 12333 2347999999999999999994433334 44
Q ss_pred Hhhhhhcccc
Q 013723 105 CAAEYLEMTE 114 (437)
Q Consensus 105 ~AA~~Lqm~e 114 (437)
-=|.|.++++
T Consensus 90 dEA~fYGl~~ 99 (465)
T KOG2714|consen 90 DEAMFYGLTP 99 (465)
T ss_pred hhhhhcCcHH
Confidence 4889999996
No 28
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=71.76 E-value=2.8 Score=33.63 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=27.4
Q ss_pred EecccHhhHHHhhhhhccccccccccHHHHHHHHHHhhh
Q 013723 95 FSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSI 133 (437)
Q Consensus 95 it~~NV~~l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~l 133 (437)
++...+..|+.||.||+|+. |++.|+.++...+
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i 43 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKG------LLDLCCKYIANMI 43 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHh
Confidence 35678899999999999994 9999999998877
No 29
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=71.57 E-value=0.6 Score=48.32 Aligned_cols=88 Identities=17% Similarity=0.004 Sum_probs=53.8
Q ss_pred eeccCc--ceeEEEEE-CCEEEEecCceeccCCHHHHHhhcCCCcCCCCce-eecCCCCCHHHHHHHHHHhhCceEEEec
Q 013723 22 YVTSEL--ATDVIINV-GEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEM-NIVDFPGGPKAFEICAKFCYGMTVTFSA 97 (437)
Q Consensus 22 ~~~~~~--~~DV~i~v-~~~~F~~HK~vLas~S~yfr~lf~~~~e~~~~~v-~L~~~pgg~~~fe~~~~FcYt~~i~it~ 97 (437)
++.+++ ..|++..+ +|..|-+||+.|+++|.||..-+..--- ...+| .+.-+ +.+|+..++|.|-..=.+-+
T Consensus 141 l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~-~~heI~~~~v~---~~~f~~flk~lyl~~na~~~ 216 (516)
T KOG0511|consen 141 LRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV-QGHEIEAHRVI---LSAFSPFLKQLYLNTNAEWK 216 (516)
T ss_pred hhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc-ccCchhhhhhh---HhhhhHHHHHHHHhhhhhhh
Confidence 566655 44887766 7889999999999998887643332110 11233 33334 58999999999965222222
Q ss_pred ccHhhHHHhhhhhccc
Q 013723 98 YNVVAARCAAEYLEMT 113 (437)
Q Consensus 98 ~NV~~l~~AA~~Lqm~ 113 (437)
+--.+|+....-++..
T Consensus 217 ~qynallsi~~kF~~e 232 (516)
T KOG0511|consen 217 DQYNALLSIEVKFSKE 232 (516)
T ss_pred hHHHHHHhhhhhccHH
Confidence 2234455555555544
No 30
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=71.11 E-value=13 Score=39.96 Aligned_cols=91 Identities=21% Similarity=0.150 Sum_probs=58.3
Q ss_pred ceeEEEEECCEEEEecCceeccC-CHHHHHhhcCC-Cc----------CCCCceeecCCCCCHHHHHHHHHHhhCceEEE
Q 013723 28 ATDVIINVGEVKFYLHKFPLLSK-SNRLHRLVLKA-SE----------ENSDEMNIVDFPGGPKAFEICAKFCYGMTVTF 95 (437)
Q Consensus 28 ~~DV~i~v~~~~F~~HK~vLas~-S~yfr~lf~~~-~e----------~~~~~v~L~~~pgg~~~fe~~~~FcYt~~i~i 95 (437)
..-|+|.|||..+.+-+..|... =.++.++.... .+ ....+.-+ +-.|.+|..|++|-+||++..
T Consensus 30 ~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfF---DR~P~~F~~Vl~fYrtGkLH~ 106 (477)
T KOG3713|consen 30 DRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFF---DRHPGAFAYVLNFYRTGKLHV 106 (477)
T ss_pred CcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeee---ccChHHHHHHHHHHhcCeecc
Confidence 34588999999999988777662 12333444321 11 11233333 344689999999999999997
Q ss_pred ecccHhhH--HHhhhhhccccccccccHHHHHHH
Q 013723 96 SAYNVVAA--RCAAEYLEMTEDVDKKNLIFKLEV 127 (437)
Q Consensus 96 t~~NV~~l--~~AA~~Lqm~e~~~~~nL~~~c~~ 127 (437)
+.++..+ ..=-+|.++++. -++.||.
T Consensus 107 -p~~vC~~~F~eEL~yWgI~~~-----~le~CC~ 134 (477)
T KOG3713|consen 107 -PADVCPLSFEEELDYWGIDEA-----HLESCCW 134 (477)
T ss_pred -ccccchHHHHHHHHHhCCChh-----hhhHHhH
Confidence 5566553 444578888873 4566654
No 31
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=69.82 E-value=13 Score=33.24 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=64.1
Q ss_pred EEE-EECCEEEEecCceeccCCHHHHHhhcCCCcCCCCceeecCCCCCHHHHHHHHHHhhCceEEEe-------------
Q 013723 31 VII-NVGEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFS------------- 96 (437)
Q Consensus 31 V~i-~v~~~~F~~HK~vLas~S~yfr~lf~~~~e~~~~~v~L~~~pgg~~~fe~~~~FcYt~~i~it------------- 96 (437)
|.| ..+|+.|.+.+. .|-+|=.++.|+....+.+ ..+.++++. +..|..+.+||---+=.++
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~~n-~p~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDSTACN-YPIPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccccccC-CCCcccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 344 458899999876 6888999999988765443 234455665 7899999999974221111
Q ss_pred ------------cccHhhHHHhhhhhccccccccccHHHHHHHHHHhhh
Q 013723 97 ------------AYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSI 133 (437)
Q Consensus 97 ------------~~NV~~l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~l 133 (437)
..-...+.-||.||++.. |++.||.-....+
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 122345667888888885 7888888777766
No 32
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=69.64 E-value=5.3 Score=39.53 Aligned_cols=89 Identities=18% Similarity=0.114 Sum_probs=63.7
Q ss_pred CEEEEecCceeccCCHHHHHhhcCC-CcCCCCceeecCCCCCHHHHHHHHHHhhCceEEEecccHh---hHHHhhhhhcc
Q 013723 37 EVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVV---AARCAAEYLEM 112 (437)
Q Consensus 37 ~~~F~~HK~vLas~S~yfr~lf~~~-~e~~~~~v~L~~~pgg~~~fe~~~~FcYt~~i~it~~NV~---~l~~AA~~Lqm 112 (437)
+..+..|+.+++++|+-|+.|+... .+.....+.+.+.. ++.++.+..|.|+..-.-+..++. .++++|...+-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~--~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK--PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccc--hhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 4559999999999999999999864 22233344666654 588999999999854433344443 66666666555
Q ss_pred ccccccccHHHHHHHHHHhhh
Q 013723 113 TEDVDKKNLIFKLEVFLNSSI 133 (437)
Q Consensus 113 ~e~~~~~nL~~~c~~FL~~~l 133 (437)
. .|...|...|.+.+
T Consensus 187 ~------~lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 R------HLKLACMPVLLSLI 201 (297)
T ss_pred H------HHHHHHHHHHHHHH
Confidence 5 48889999998776
No 33
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=69.57 E-value=17 Score=35.55 Aligned_cols=88 Identities=20% Similarity=0.244 Sum_probs=64.7
Q ss_pred EEEEECCEEEEecCceeccC--CHHHHHhhcCC----CcCCCCceeecCCCCCHHHHHHHHHHhhCceEE-EecccHhhH
Q 013723 31 VIINVGEVKFYLHKFPLLSK--SNRLHRLVLKA----SEENSDEMNIVDFPGGPKAFEICAKFCYGMTVT-FSAYNVVAA 103 (437)
Q Consensus 31 V~i~v~~~~F~~HK~vLas~--S~yfr~lf~~~----~e~~~~~v~L~~~pgg~~~fe~~~~FcYt~~i~-it~~NV~~l 103 (437)
|.+.+||+.|.--..-|.-+ =.-+-+||... .+.++.-+-|. =+ |.-||-|+.|.-.|.+. .+.-|+..+
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lID-Rs--p~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLID-RS--PKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEc-cC--chhhHHHHHHHhcCceeecCCccHHHH
Confidence 67889999998887777766 34688899863 12233334443 23 58999999999988765 566889999
Q ss_pred HHhhhhhccccccccccHHHHHHH
Q 013723 104 RCAAEYLEMTEDVDKKNLIFKLEV 127 (437)
Q Consensus 104 ~~AA~~Lqm~e~~~~~nL~~~c~~ 127 (437)
+.+|.|+|+-. |++.-++
T Consensus 88 LeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHhhHHhhHh------HHhHHhh
Confidence 99999999984 6665555
No 34
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=36.92 E-value=1.3e+02 Score=28.14 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=64.3
Q ss_pred EEEEECCEEEEecCceeccCCHHHH-HhhcCCCc----CCCCceeecCCCCCHHHHHHHHHHhhCceEEEecccHhhHHH
Q 013723 31 VIINVGEVKFYLHKFPLLSKSNRLH-RLVLKASE----ENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARC 105 (437)
Q Consensus 31 V~i~v~~~~F~~HK~vLas~S~yfr-~lf~~~~e----~~~~~v~L~~~pgg~~~fe~~~~FcYt~~i~it~~NV~~l~~ 105 (437)
|.+.|||..|.--|.-|.--+.-|. ++.....+ .+..---|-| -+|.-|.-+++|.--|++-++.-.=+.++.
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlID--RDP~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLID--RDPFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEec--cCcchHHHHHHHHhcchhhhhhhhhhccch
Confidence 5678999999999999998884454 44443221 1222223322 236899999999999999999855566888
Q ss_pred hhhhhccccccccccHHHHHHHHHHh
Q 013723 106 AAEYLEMTEDVDKKNLIFKLEVFLNS 131 (437)
Q Consensus 106 AA~~Lqm~e~~~~~nL~~~c~~FL~~ 131 (437)
-|+|...+. |+....+-+.+
T Consensus 101 EAefyn~~~------li~likd~i~d 120 (210)
T KOG2715|consen 101 EAEFYNDPS------LIQLIKDRIQD 120 (210)
T ss_pred hhhccCChH------HHHHHHHHHHH
Confidence 899988884 55544444443
No 35
>PHA00617 ribbon-helix-helix domain containing protein
Probab=32.06 E-value=74 Score=26.01 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=32.8
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhh
Q 013723 217 CELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRW 253 (437)
Q Consensus 217 ~~L~~~~~~rvi~am~~~g~~~~e~I~~al~~Ya~~~ 253 (437)
..||.++.+++-...+..|..+.+.|-+||-.|...|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 6899999999999999888878889999999998765
No 36
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=23.36 E-value=1e+02 Score=20.68 Aligned_cols=34 Identities=35% Similarity=0.463 Sum_probs=26.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 013723 218 ELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAV 251 (437)
Q Consensus 218 ~L~~~~~~rvi~am~~~g~~~~e~I~~al~~Ya~ 251 (437)
.||.+.++++=..-+..|+...+.|-.+|..|+.
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAIREYLE 38 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 4677888888777777887667788888888865
No 37
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=22.72 E-value=50 Score=34.96 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=29.2
Q ss_pred EecccHhhHHHhhhhhccccccccccHHHHHHHHHHhhh
Q 013723 95 FSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSI 133 (437)
Q Consensus 95 it~~NV~~l~~AA~~Lqm~e~~~~~nL~~~c~~FL~~~l 133 (437)
+.-+||..++-||.+.|+++ |.+.|..|+..+.
T Consensus 145 L~~~NvCmifdaA~ly~l~~------Lt~~C~mfmDrnA 177 (620)
T KOG4350|consen 145 LKNENVCMIFDAAYLYQLTD------LTDYCMMFMDRNA 177 (620)
T ss_pred HcccceeeeeeHHHHhcchH------HHHHHHHHHhcCH
Confidence 45689999999999999996 8999999998654
No 38
>PRK04330 hypothetical protein; Provisional
Probab=22.33 E-value=53 Score=27.36 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCChhh
Q 013723 385 LAVGKLINGYLAEIAHDPNLTLAS 408 (437)
Q Consensus 385 ~~VakLvD~YLaEiA~D~~L~~~k 408 (437)
.+.|.-| ++|-||+.|||+|+..
T Consensus 51 vRaA~AI-s~LdeIs~DPNmP~h~ 73 (88)
T PRK04330 51 VRAATAI-SILDEISNDPNMPLHT 73 (88)
T ss_pred HHHHHHH-HHHHHhhcCCCCChHH
Confidence 4444444 6899999999999764
No 39
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=21.57 E-value=55 Score=27.08 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCChhh
Q 013723 383 SLLAVGKLINGYLAEIAHDPNLTLAS 408 (437)
Q Consensus 383 ~~~~VakLvD~YLaEiA~D~~L~~~k 408 (437)
.-.+.|.-| +.|-||+.|||+|+..
T Consensus 46 ~~vRaataI-s~LdeIsnDPNmP~h~ 70 (85)
T PF03685_consen 46 PGVRAATAI-SILDEISNDPNMPSHT 70 (85)
T ss_dssp HHHHHHHHH-HHHHHHCT-TTS-HHH
T ss_pred hhHhHHHHH-HHHHHhhcCCCCchHH
Confidence 345555555 6899999999999764
No 40
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=21.17 E-value=83 Score=32.21 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=28.8
Q ss_pred EEEEe-cCceeccCCHHHHHhhcCC-CcCCCCceeecC-CCCCHHHH
Q 013723 38 VKFYL-HKFPLLSKSNRLHRLVLKA-SEENSDEMNIVD-FPGGPKAF 81 (437)
Q Consensus 38 ~~F~~-HK~vLas~S~yfr~lf~~~-~e~~~~~v~L~~-~pgg~~~f 81 (437)
.+|.+ -|+++++.-.-|+.+|... .+.....+.+++ ||||.|..
T Consensus 160 ~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~q 206 (415)
T COG3919 160 VHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQ 206 (415)
T ss_pred ceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCccc
Confidence 44433 4667777778889888864 444556666654 78876654
No 41
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=20.04 E-value=2.3e+02 Score=27.64 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=57.0
Q ss_pred EEEEECCEEEEecCc-eeccCCHHHHHhhcCCC---cCCCCceeecCCCCCHHHHHHHHHHhhCceEEEec--ccHhhHH
Q 013723 31 VIINVGEVKFYLHKF-PLLSKSNRLHRLVLKAS---EENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSA--YNVVAAR 104 (437)
Q Consensus 31 V~i~v~~~~F~~HK~-vLas~S~yfr~lf~~~~---e~~~~~v~L~~~pgg~~~fe~~~~FcYt~~i~it~--~NV~~l~ 104 (437)
|.+.|||+.|.--.. ...=.-..+.+||+... ........|. =+ ...|.-+++|.=|..+.+.. .++..|.
T Consensus 11 v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fID-RD--G~lFRyvL~~LRt~~l~lpe~f~e~~~L~ 87 (221)
T KOG2723|consen 11 VELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFID-RD--GFLFRYVLDYLRTKALLLPEDFAEVERLV 87 (221)
T ss_pred eeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEc-CC--cchHHHHHHHhcccccccchhhhhHHHHH
Confidence 678899998874433 33333567788888521 1123445553 12 26899999999997777766 7899999
Q ss_pred Hhhhhhcccc
Q 013723 105 CAAEYLEMTE 114 (437)
Q Consensus 105 ~AA~~Lqm~e 114 (437)
.=|+|.|++.
T Consensus 88 rEA~f~~l~~ 97 (221)
T KOG2723|consen 88 REAEFFQLEA 97 (221)
T ss_pred HHHHHHcccc
Confidence 9999999985
Done!