BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013724
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Query: 128 DTRDNFTSHLYSALSQKSIETF-----INRGDEISQSLVDAIEASAISLIIFSEGYASSR 182
DTR NF S LY L ++SI TF + G S L IE S ++++ SE YA+S
Sbjct: 19 DTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASS 78
Query: 183 WFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTW 242
W D+LV I+ ++ V+P+FYGV+P V+W TG + F K R E+ EK+ W
Sbjct: 79 WCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKW 136
Query: 243 RNAL 246
R AL
Sbjct: 137 RQAL 140
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 8/127 (6%)
Query: 128 DTRDNFTSHLYSALSQKSIETFIN-----RGDEISQSLVDAIEASAISLIIFSEGYASSR 182
DTR+ FT LY +L + I TF + +G EI +L+ AI+ S I + I S GYA S+
Sbjct: 46 DTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSK 105
Query: 183 WFFDKLVKILQCKRVY-GQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQT 241
W +L +I++ + +I+LP+FY VDP+ V+ TG Y +F K +F + + +Q
Sbjct: 106 WCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQN 163
Query: 242 WRNALKE 248
W++ALK+
Sbjct: 164 WKDALKK 170
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 244 NALKEKIISACNIFTKTPNPSFS-----QHLNTLVVLNLR-DCKSLKSLPAGI-HLEFLK 296
N L+E I AC T+ P P S +H + + +LR + ++SLPA I +L+ LK
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209
Query: 297 ELDLSGCSKLKRLPDISSAANIEEMFLNG-TAIEELPSSIECLYKLLHLDLEDCKSLKSL 355
L + P I +EE+ L G TA+ P L L L+DC +L +L
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 356 PSGLCKLKSLKYLTLNGCSILQRL 379
P + +L L+ L L GC L RL
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRL 293
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 34/135 (25%)
Query: 283 LKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSA----------ANIEEMFLNGTAIEEL 331
L++LPA I L L+EL + C +L LP+ ++ N++ + L T I L
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 332 PSSIECLY-----------------------KLLHLDLEDCKSLKSLPSGLCKLKSLKYL 368
P+SI L KL LDL C +L++ P LK L
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258
Query: 369 TLNGCSILQRLNFDI 383
L CS L L DI
Sbjct: 259 ILKDCSNLLTLPLDI 273
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 306 LKRLPDISSA-ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP-------- 356
L LPD A +E + L + LP+SI L +L L + C L LP
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 357 ----SGLCKLKSLK 366
GL L+SL+
Sbjct: 176 SGEHQGLVNLQSLR 189
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 283 LKSLPAGIH--LEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSIECL 338
L +LP G+ L L LDL G ++L LP +++E+F+ + ELP IE L
Sbjct: 76 LGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERL 134
Query: 339 YKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNG 372
L HL L D LKS+P G +L SL + L G
Sbjct: 135 THLTHLAL-DQNQLKSIPHGAFDRLSSLTHAYLFG 168
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 298 LDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS 357
LDLS +I + ++LNG ++ ELP+ I+ L L LDL + L SLP+
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPA 287
Query: 358 GLCKLKSLKYL 368
L LKY
Sbjct: 288 ELGSCFQLKYF 298
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 274 VLNLRDCKSLKSLPAG-IHLEF-----LKELDLSGCSKLKRLPDISSAANIEEM----FL 323
VL ++ L+S PA EF +K + G S K L I+ + + + F
Sbjct: 178 VLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFY 237
Query: 324 NGTAIEEL--PSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNF 381
A++E+ P ++ + L L++C +LK+L + K+K++ YL +GCS L ++
Sbjct: 238 GXKALDEIAIPKNVTSIGSFL---LQNCTALKTL-NFYAKVKTVPYLLCSGCSNLTKVVX 293
Query: 382 D 382
D
Sbjct: 294 D 294
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 281 KSLKSLPAGIHLEFLKELDLSGCSKLKRLP--DISSAANIEEMFLNGTAIEELPS-SIEC 337
+S S+P+G+ +K LDLS +K+ + D+ + AN++ + L + I + +
Sbjct: 41 RSFTSIPSGLTAA-MKSLDLSF-NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 98
Query: 338 LYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNG 372
L L HLDL D L SL S L SLKYL L G
Sbjct: 99 LGSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMG 133
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 281 KSLKSLPAGIHLEFLKELDLSGCSKLKRLP--DISSAANIEEMFLNGTAIEELPS-SIEC 337
+S S+P+G+ +K LDLS +K+ + D+ + AN++ + L + I + +
Sbjct: 15 RSFTSIPSGLTAA-MKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 72
Query: 338 LYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNG 372
L L HLDL D L SL S L SLKYL L G
Sbjct: 73 LGSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMG 107
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 69 SNGHSRRYSDPAENGDVRSGSNSGSRRTPNREGYRYGYILHS 110
+NG RY P +GD+ G + R G RYGY +H
Sbjct: 40 ANGQEHRYDLPGHSGDIWHGYLPDA-----RPGLRYGYRVHG 76
>pdb|2IEW|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
From S. Cerevisiae
pdb|2IEW|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
From S. Cerevisiae
pdb|2IF8|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
In Complex With Adp And Mn2+ From S. Cerevisiae
pdb|2IF8|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
In Complex With Adp And Mn2+ From S. Cerevisiae
Length = 363
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 5 SLSDGSLDTMARRPADPEEELRWMSQEVRESSPRTSAASGD----DWRSAFDAAANGPVS 60
+L+DG + +PA P+E + + +VR+ S R S+A GD W + N
Sbjct: 20 TLTDGD-GLLIFKPAFPQELEFYKAIQVRDVSRRKSSADGDAPLCSWMPTYLGVLNEGAK 78
Query: 61 LRSYSRSASNGHSRRYSDPAENGDVRSGSNSGSRRTPNREGYRYGY 106
+ +A R SD +N D + S++ E YG+
Sbjct: 79 IEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENLLYGF 124
>pdb|3LSB|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSB|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSC|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
pdb|3LSC|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
Length = 456
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 6 LSDGSLDTMARRPADPEEELRWMS-QEVRESSPRTSA 41
L D L +A RPADP E +W+S +E+ + R SA
Sbjct: 336 LGDLRLAALAHRPADPNEPEKWLSARELLRMATRGSA 372
>pdb|3LS9|A Chain A, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
pdb|3LS9|B Chain B, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
Length = 456
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 6 LSDGSLDTMARRPADPEEELRWMS-QEVRESSPRTSA 41
L D L +A RPADP E +W+S +E+ + R SA
Sbjct: 336 LGDLRLAALAHRPADPNEPEKWLSARELLRMATRGSA 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,224,723
Number of Sequences: 62578
Number of extensions: 549894
Number of successful extensions: 1260
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 38
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)