Query 013724
Match_columns 437
No_of_seqs 461 out of 3476
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:45:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3.1E-37 6.6E-42 351.5 21.4 131 116-248 11-145 (1153)
2 PLN03194 putative disease resi 100.0 2.3E-34 4.9E-39 255.9 10.7 136 97-253 10-152 (187)
3 PF01582 TIR: TIR domain; Int 99.7 8.3E-19 1.8E-23 153.5 0.8 127 120-246 1-139 (141)
4 smart00255 TIR Toll - interleu 99.6 7.8E-16 1.7E-20 134.0 7.7 131 117-248 1-136 (140)
5 PLN00113 leucine-rich repeat r 99.5 1.1E-14 2.4E-19 164.9 9.9 176 245-424 141-319 (968)
6 PLN03210 Resistant to P. syrin 99.5 6.1E-14 1.3E-18 160.9 15.7 249 118-381 443-722 (1153)
7 PLN00113 leucine-rich repeat r 99.5 1.8E-14 3.9E-19 163.2 9.9 178 244-425 164-344 (968)
8 KOG0617 Ras suppressor protein 99.3 5.4E-14 1.2E-18 123.6 -2.9 142 246-394 35-180 (264)
9 KOG0444 Cytoskeletal regulator 99.3 5.2E-13 1.1E-17 136.8 3.6 159 263-427 96-282 (1255)
10 KOG0617 Ras suppressor protein 99.3 8.2E-14 1.8E-18 122.4 -4.9 153 268-426 31-186 (264)
11 KOG0444 Cytoskeletal regulator 99.2 2.8E-13 6E-18 138.7 -4.8 111 312-426 241-352 (1255)
12 KOG0472 Leucine-rich repeat pr 99.1 6.9E-12 1.5E-16 123.1 -3.8 150 246-403 162-313 (565)
13 KOG0472 Leucine-rich repeat pr 99.0 2.9E-12 6.3E-17 125.6 -7.6 173 245-426 46-219 (565)
14 PF13676 TIR_2: TIR domain; PD 99.0 1.4E-10 3.1E-15 95.3 2.7 82 120-207 1-86 (102)
15 PF14580 LRR_9: Leucine-rich r 99.0 3.6E-10 7.7E-15 102.1 4.7 130 268-400 17-153 (175)
16 PLN03150 hypothetical protein; 98.9 2.6E-09 5.7E-14 115.3 9.6 110 271-380 419-532 (623)
17 KOG4194 Membrane glycoprotein 98.9 1.1E-09 2.4E-14 112.1 5.5 178 242-426 147-330 (873)
18 PLN03150 hypothetical protein; 98.8 5.1E-09 1.1E-13 113.1 7.9 103 294-396 419-524 (623)
19 KOG4194 Membrane glycoprotein 98.8 7E-10 1.5E-14 113.5 0.5 146 245-394 174-324 (873)
20 KOG0618 Serine/threonine phosp 98.8 7.1E-10 1.5E-14 118.7 -0.2 156 263-424 303-487 (1081)
21 KOG0618 Serine/threonine phosp 98.7 1.8E-09 3.9E-14 115.7 0.4 101 270-373 359-462 (1081)
22 PRK15387 E3 ubiquitin-protein 98.7 1.9E-08 4E-13 109.7 7.1 75 316-398 382-456 (788)
23 KOG0532 Leucine-rich repeat (L 98.7 2E-09 4.4E-14 110.0 -0.6 123 267-394 118-241 (722)
24 KOG1259 Nischarin, modulator o 98.7 2.4E-09 5.1E-14 102.0 -0.5 132 238-377 279-413 (490)
25 cd00116 LRR_RI Leucine-rich re 98.7 2.3E-09 5.1E-14 105.5 -1.2 84 293-376 137-234 (319)
26 PF14580 LRR_9: Leucine-rich r 98.7 1E-08 2.3E-13 92.6 2.7 122 245-372 20-149 (175)
27 PRK15387 E3 ubiquitin-protein 98.6 1.1E-07 2.4E-12 103.9 9.1 162 242-426 280-458 (788)
28 KOG1259 Nischarin, modulator o 98.6 5.6E-09 1.2E-13 99.5 -1.4 125 269-398 283-410 (490)
29 PRK15370 E3 ubiquitin-protein 98.6 7.4E-08 1.6E-12 105.3 6.9 74 316-397 325-398 (754)
30 KOG4658 Apoptotic ATPase [Sign 98.6 3E-08 6.6E-13 110.0 3.5 132 268-399 543-680 (889)
31 PRK15370 E3 ubiquitin-protein 98.6 1.4E-07 3E-12 103.3 8.5 136 245-398 200-336 (754)
32 cd00116 LRR_RI Leucine-rich re 98.6 3E-08 6.5E-13 97.6 2.8 134 266-399 77-233 (319)
33 KOG0532 Leucine-rich repeat (L 98.5 2E-08 4.3E-13 102.9 0.6 146 244-397 121-270 (722)
34 PF13855 LRR_8: Leucine rich r 98.4 2.4E-07 5.3E-12 68.6 3.8 58 316-374 1-60 (61)
35 COG4886 Leucine-rich repeat (L 98.4 1.3E-07 2.9E-12 96.5 3.0 122 268-394 161-284 (394)
36 COG4886 Leucine-rich repeat (L 98.3 4E-07 8.7E-12 92.9 3.7 171 245-426 117-290 (394)
37 PRK15386 type III secretion pr 98.3 1.2E-06 2.6E-11 88.7 6.9 88 237-337 46-136 (426)
38 PF13855 LRR_8: Leucine rich r 98.3 7.3E-07 1.6E-11 66.0 3.4 57 293-350 1-60 (61)
39 KOG3207 Beta-tubulin folding c 98.2 9.8E-08 2.1E-12 95.2 -2.6 146 245-393 173-332 (505)
40 KOG4658 Apoptotic ATPase [Sign 98.2 7.9E-07 1.7E-11 98.9 4.0 128 269-398 522-653 (889)
41 PRK15386 type III secretion pr 98.2 4E-06 8.7E-11 84.9 8.2 115 268-396 50-186 (426)
42 KOG3207 Beta-tubulin folding c 98.2 3.3E-07 7.1E-12 91.5 0.4 107 267-374 169-282 (505)
43 PF12799 LRR_4: Leucine Rich r 98.0 5.8E-06 1.2E-10 57.1 3.9 40 316-356 1-40 (44)
44 KOG4237 Extracellular matrix p 98.0 5.8E-07 1.3E-11 88.7 -2.6 100 272-372 69-173 (498)
45 KOG4579 Leucine-rich repeat (L 98.0 4.2E-07 9.2E-12 77.7 -3.5 79 270-350 53-134 (177)
46 KOG4237 Extracellular matrix p 97.9 1.8E-06 4E-11 85.3 -0.3 137 283-423 58-198 (498)
47 KOG1644 U2-associated snRNP A' 97.8 4.9E-05 1.1E-09 69.2 6.3 124 291-416 40-175 (233)
48 KOG4579 Leucine-rich repeat (L 97.8 1.7E-06 3.6E-11 74.1 -3.3 107 272-382 29-141 (177)
49 KOG2120 SCF ubiquitin ligase, 97.7 1.8E-06 3.9E-11 82.6 -3.6 152 245-400 211-376 (419)
50 KOG3678 SARM protein (with ste 97.7 7.8E-05 1.7E-09 75.0 7.1 88 115-208 610-710 (832)
51 KOG4341 F-box protein containi 97.6 1.5E-05 3.1E-10 79.6 0.5 183 245-427 269-466 (483)
52 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.6E-09 66.7 5.4 102 270-373 42-150 (233)
53 KOG3665 ZYG-1-like serine/thre 97.5 4.3E-05 9.4E-10 83.2 2.0 81 291-373 146-230 (699)
54 PF12799 LRR_4: Leucine Rich r 97.5 8.4E-05 1.8E-09 51.3 2.8 40 293-333 1-41 (44)
55 KOG1859 Leucine-rich repeat pr 97.5 3.5E-06 7.5E-11 88.9 -6.1 103 268-375 185-291 (1096)
56 KOG0531 Protein phosphatase 1, 97.5 3.8E-05 8.2E-10 79.2 1.1 105 266-374 91-197 (414)
57 KOG2982 Uncharacterized conser 97.4 0.00011 2.3E-09 70.6 3.2 152 243-395 70-287 (418)
58 KOG1909 Ran GTPase-activating 97.4 0.00036 7.8E-09 68.4 6.8 263 121-399 3-310 (382)
59 KOG2120 SCF ubiquitin ligase, 97.4 3.2E-06 7E-11 80.9 -7.1 135 294-437 186-327 (419)
60 KOG0531 Protein phosphatase 1, 97.4 4E-05 8.6E-10 79.0 -0.3 121 269-395 71-194 (414)
61 KOG2739 Leucine-rich acidic nu 97.3 8.8E-05 1.9E-09 70.0 1.9 62 312-374 61-127 (260)
62 KOG2739 Leucine-rich acidic nu 97.3 0.00019 4.2E-09 67.7 3.2 105 266-372 39-152 (260)
63 KOG1909 Ran GTPase-activating 97.2 0.00014 3E-09 71.2 1.5 179 245-425 93-310 (382)
64 KOG3665 ZYG-1-like serine/thre 97.1 0.0002 4.3E-09 78.1 2.2 151 242-393 120-281 (699)
65 KOG2982 Uncharacterized conser 97.0 0.00017 3.7E-09 69.3 0.1 128 245-374 46-184 (418)
66 KOG1859 Leucine-rich repeat pr 97.0 6.6E-05 1.4E-09 79.6 -3.3 107 237-350 180-290 (1096)
67 KOG2123 Uncharacterized conser 96.9 4.7E-05 1E-09 72.4 -4.8 82 271-354 20-103 (388)
68 KOG2123 Uncharacterized conser 96.7 9.4E-05 2E-09 70.4 -4.2 101 291-394 17-124 (388)
69 PF08937 DUF1863: MTH538 TIR-l 96.7 0.0044 9.4E-08 53.2 6.2 75 118-193 1-97 (130)
70 KOG4341 F-box protein containi 96.5 9.3E-05 2E-09 74.0 -5.6 23 415-437 364-386 (483)
71 KOG1947 Leucine rich repeat pr 96.2 0.00068 1.5E-08 70.3 -2.2 125 245-369 189-327 (482)
72 PF00560 LRR_1: Leucine Rich R 95.7 0.0053 1.1E-07 35.5 1.1 21 317-337 1-21 (22)
73 COG5238 RNA1 Ran GTPase-activa 94.5 0.047 1E-06 52.4 4.5 111 265-377 115-256 (388)
74 KOG1947 Leucine rich repeat pr 94.5 0.01 2.3E-07 61.4 0.0 127 268-394 186-328 (482)
75 PF13306 LRR_5: Leucine rich r 94.2 0.18 3.9E-06 42.2 7.2 99 266-372 8-112 (129)
76 PF00560 LRR_1: Leucine Rich R 93.7 0.027 5.9E-07 32.5 0.8 18 341-359 2-19 (22)
77 PF13504 LRR_7: Leucine rich r 93.2 0.061 1.3E-06 29.0 1.5 15 317-331 2-16 (17)
78 COG5238 RNA1 Ran GTPase-activa 92.0 0.24 5.3E-06 47.6 4.9 127 268-398 90-253 (388)
79 PF13306 LRR_5: Leucine rich r 92.0 0.56 1.2E-05 39.2 6.8 96 291-394 10-110 (129)
80 PF10137 TIR-like: Predicted n 90.7 0.66 1.4E-05 39.5 5.8 56 120-178 2-62 (125)
81 PF13504 LRR_7: Leucine rich r 90.6 0.17 3.7E-06 27.3 1.4 16 340-356 2-17 (17)
82 KOG3864 Uncharacterized conser 90.5 0.057 1.2E-06 49.6 -0.9 80 318-397 103-186 (221)
83 smart00369 LRR_TYP Leucine-ric 90.2 0.24 5.2E-06 29.5 2.0 20 315-334 1-20 (26)
84 smart00370 LRR Leucine-rich re 90.2 0.24 5.2E-06 29.5 2.0 20 315-334 1-20 (26)
85 KOG0473 Leucine-rich repeat pr 89.8 0.0082 1.8E-07 56.1 -6.9 84 291-375 40-123 (326)
86 smart00370 LRR Leucine-rich re 83.5 0.88 1.9E-05 27.0 1.8 20 338-358 1-20 (26)
87 smart00369 LRR_TYP Leucine-ric 83.5 0.88 1.9E-05 27.0 1.8 20 338-358 1-20 (26)
88 PF08357 SEFIR: SEFIR domain; 83.1 2.5 5.3E-05 36.8 5.3 60 119-178 2-70 (150)
89 KOG0473 Leucine-rich repeat pr 82.9 0.025 5.4E-07 53.0 -7.7 87 267-355 39-127 (326)
90 KOG3864 Uncharacterized conser 77.7 0.3 6.4E-06 45.0 -2.5 80 271-350 102-187 (221)
91 smart00364 LRR_BAC Leucine-ric 73.7 1.9 4.2E-05 26.0 1.1 17 317-333 3-19 (26)
92 COG4916 Uncharacterized protei 72.0 7.4 0.00016 37.0 5.1 97 112-214 172-281 (329)
93 PF13271 DUF4062: Domain of un 69.6 13 0.00029 28.9 5.5 61 120-181 2-67 (83)
94 smart00365 LRR_SD22 Leucine-ri 68.8 3.7 8.1E-05 24.8 1.6 15 316-330 2-16 (26)
95 PF15178 TOM_sub5: Mitochondri 58.9 7.1 0.00015 26.8 1.7 15 19-33 11-25 (51)
96 PF13516 LRR_6: Leucine Rich r 58.6 5.2 0.00011 23.1 0.9 14 316-329 2-15 (24)
97 smart00367 LRR_CC Leucine-rich 57.8 7.8 0.00017 22.9 1.6 16 362-377 1-16 (26)
98 KOG3763 mRNA export factor TAP 46.6 9.9 0.00021 40.2 1.3 62 291-354 216-285 (585)
99 PF08945 Bclx_interact: Bcl-x 46.5 9.8 0.00021 25.0 0.8 8 27-34 19-26 (40)
100 COG4271 Predicted nucleotide-b 45.0 47 0.001 30.5 5.1 59 115-178 81-145 (233)
101 smart00368 LRR_RI Leucine rich 39.0 22 0.00047 21.5 1.5 13 317-329 3-15 (28)
102 KOG3763 mRNA export factor TAP 35.6 20 0.00043 38.0 1.5 61 268-329 216-283 (585)
103 PRK13762 tRNA-modifying enzyme 31.4 1E+02 0.0023 30.6 5.8 58 117-177 130-188 (322)
104 PF03129 HGTP_anticodon: Antic 31.0 1.4E+02 0.0029 23.2 5.4 55 119-174 1-60 (94)
105 COG3526 Uncharacterized protei 30.4 23 0.00049 27.7 0.7 8 27-34 24-31 (99)
106 PF02310 B12-binding: B12 bind 30.0 2.1E+02 0.0045 23.2 6.7 58 134-191 17-74 (121)
107 COG3980 spsG Spore coat polysa 28.2 1.2E+02 0.0027 29.6 5.4 62 116-178 157-221 (318)
108 PF11880 DUF3400: Domain of un 25.9 36 0.00078 23.3 0.9 14 43-56 23-36 (45)
109 cd04904 ACT_AAAH ACT domain of 23.5 88 0.0019 23.5 2.9 26 116-144 41-66 (74)
110 PF15576 DUF4661: Domain of un 23.5 24 0.00053 32.1 -0.3 29 16-52 2-33 (253)
111 COG0512 PabA Anthranilate/para 23.2 1.2E+02 0.0025 27.9 4.0 49 128-179 8-56 (191)
112 PF12437 GSIII_N: Glutamine sy 22.5 17 0.00037 32.1 -1.4 50 79-129 99-155 (164)
113 COG5250 RPB4 RNA polymerase II 22.0 35 0.00075 28.4 0.4 46 117-166 64-129 (138)
114 cd00860 ThrRS_anticodon ThrRS 21.5 2.5E+02 0.0054 21.2 5.3 45 118-163 2-47 (91)
115 cd00858 GlyRS_anticodon GlyRS 21.2 2.3E+02 0.005 23.4 5.3 61 115-177 24-87 (121)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.1e-37 Score=351.51 Aligned_cols=131 Identities=36% Similarity=0.669 Sum_probs=122.1
Q ss_pred CCCceeeccCCCcccCchHHHHHHHHhcCCceEEe----cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHHhh
Q 013724 116 SYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKI 191 (437)
Q Consensus 116 ~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~~i 191 (437)
++||||+||||+|||++|++|||+||.++||.+|+ ++|+.|.++|++||++||++|||||++||+|.|||+||++|
T Consensus 11 ~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i 90 (1153)
T PLN03210 11 WVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEI 90 (1153)
T ss_pred CCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHH
Confidence 48899999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred hhhccccCeEEEeeeecCCCCCCCCCCCccCCchhhhhhhhhcChHHHHHHHHhhhh
Q 013724 192 LQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKE 248 (437)
Q Consensus 192 l~c~~~~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~~~~~~~e~l~~W~~aL~~ 248 (437)
++|+++.+++|+||||+|||++||+|+|.|+++|.+++... ..+.+++|+.||++
T Consensus 91 ~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~ 145 (1153)
T PLN03210 91 VRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTD 145 (1153)
T ss_pred HHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877543 45667788776643
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=255.90 Aligned_cols=136 Identities=24% Similarity=0.394 Sum_probs=118.3
Q ss_pred CCCCCccccceeccCCCCCCCCceeeccCCCcccCchHHHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEE
Q 013724 97 PNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISL 171 (437)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i 171 (437)
-||+-.+| -++..+.++|||||||||+|+|++|++|||++|.++||++|+ ++|+.|.+.|.+||++|+++|
T Consensus 10 ~~~~~~~~----~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~I 85 (187)
T PLN03194 10 NNRLFLHY----PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGV 85 (187)
T ss_pred hhhhhccc----ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEE
Confidence 34544444 456667789999999999999999999999999999999999 689999999999999999999
Q ss_pred EEecCccccccccHhhHHhhhhhccccCeEEEeeeecCCCCCCCCC-CCccCCchhhhhhhhhcChHHHHHHHHhhhhh-
Q 013724 172 IIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWP-TGSYGDSFLKLEERFKENSEKLQTWRNALKEK- 249 (437)
Q Consensus 172 ~i~S~~~~sS~Wcl~EL~~il~c~~~~~~~vlPiFy~VdpS~Vr~q-~gsf~~af~~le~~~~~~~e~l~~W~~aL~~L- 249 (437)
+|||++|++|.||++||++|++|. +.|+||||+|+|++||+| .|. ...+.+++|+.+|++.
T Consensus 86 vVfS~~Ya~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va 148 (187)
T PLN03194 86 AVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAK 148 (187)
T ss_pred EEECCCcccchhHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHh
Confidence 999999999999999999999984 379999999999999997 332 1357899999999984
Q ss_pred hccc
Q 013724 250 IISA 253 (437)
Q Consensus 250 ~Ls~ 253 (437)
++.+
T Consensus 149 ~l~G 152 (187)
T PLN03194 149 YTVG 152 (187)
T ss_pred cccc
Confidence 3443
No 3
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.72 E-value=8.3e-19 Score=153.48 Aligned_cols=127 Identities=26% Similarity=0.446 Sum_probs=106.7
Q ss_pred eeeccCCCcccCchHHHHHHHHhcC--CceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHHhhh
Q 013724 120 VPTAIPSEDTRDNFTSHLYSALSQK--SIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKIL 192 (437)
Q Consensus 120 vf~sf~g~d~r~~f~~~l~~~L~~~--g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~~il 192 (437)
|||||+++|.+..|+++|.++|++. |+++|+ ..|..+.+++.++|++||++|+|||++|++|.||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999666689999999999999 999999 689999999999999999999999999999999999999999
Q ss_pred hhccccC--eEEEeeeecCCCCCCC-CCCCccCCchhhhhhhhhcC--hHHHHHHHHhh
Q 013724 193 QCKRVYG--QIVLPVFYGVDPAPVK-WPTGSYGDSFLKLEERFKEN--SEKLQTWRNAL 246 (437)
Q Consensus 193 ~c~~~~~--~~vlPiFy~VdpS~Vr-~q~gsf~~af~~le~~~~~~--~e~l~~W~~aL 246 (437)
++....+ .+|+|+||++.+.++. .+.+.+...|.......... ......|+..+
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~ 139 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLR 139 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHh
Confidence 9986654 8999999999999998 57777776666666554333 45677787654
No 4
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.62 E-value=7.8e-16 Score=133.99 Aligned_cols=131 Identities=31% Similarity=0.495 Sum_probs=106.0
Q ss_pred CCceeeccCC-CcccCchHHHHHHHHhcCCceEEe---cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHHhhh
Q 013724 117 YEGVPTAIPS-EDTRDNFTSHLYSALSQKSIETFI---NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKIL 192 (437)
Q Consensus 117 ~~dvf~sf~g-~d~r~~f~~~l~~~L~~~g~~~~~---~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~~il 192 (437)
.|||||||++ +|++..|+.+|..+|...|+.+|. ..|.....+|.++|++|++.|+++|++|..|.||..|+..++
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~ 80 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL 80 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHHHH
Confidence 4899999999 677889999999999999999999 344444449999999999999999999999999999999998
Q ss_pred hhccc-cCeEEEeeeecCCCCCCCCCCCccCCchhhhhhhhhcChHHHHHHHHhhhh
Q 013724 193 QCKRV-YGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKE 248 (437)
Q Consensus 193 ~c~~~-~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~~~~~~~e~l~~W~~aL~~ 248 (437)
.+... ..+.++||+++..|..+..+.+.+...+......+...... ..|...+..
T Consensus 81 ~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~ 136 (140)
T smart00255 81 ENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYA 136 (140)
T ss_pred HHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHH
Confidence 87644 66799999999998888888888877776653333233222 567765544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.54 E-value=1.1e-14 Score=164.88 Aligned_cols=176 Identities=20% Similarity=0.191 Sum_probs=109.6
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF 322 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~ 322 (437)
.|+.|++++|...+..+ ..++.+++|++|+|++|.+.+.+|..+ .+++|++|+|++|.+.+.+|. ++++++|+.|+
T Consensus 141 ~L~~L~Ls~n~~~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 141 NLETLDLSNNMLSGEIP--NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCEEECcCCcccccCC--hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 45556665554433222 234556677777777766555666666 667777777777666666665 66677777777
Q ss_pred eeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchh
Q 013724 323 LNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFF 401 (437)
Q Consensus 323 Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~ 401 (437)
|++|.+. .+|..++++++|++|+|++|...+.+|..++++++|++|++++|...+.+|..+.++++|+.|++.+|...
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~- 297 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS- 297 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-
Confidence 7777666 56666777777777777777655666766777777777777777666667777777777777776554322
Q ss_pred hccccccCCCcccccccccCCCC
Q 013724 402 VETSAASGDDWKSAFDAAADGPV 424 (437)
Q Consensus 402 ~~~~~~~~~~~~~l~~~~~s~~~ 424 (437)
...+.....++.++.+..+++.
T Consensus 298 -~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 298 -GEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred -cCCChhHcCCCCCcEEECCCCc
Confidence 1222333345555555555543
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=6.1e-14 Score=160.87 Aligned_cols=249 Identities=25% Similarity=0.318 Sum_probs=155.6
Q ss_pred CceeeccCCCcccCchHHHHHHHHhcCCceEEe-------------cCCCchHHHHHHHHHhcceEEEEecCcccccccc
Q 013724 118 EGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-------------NRGDEISQSLVDAIEASAISLIIFSEGYASSRWF 184 (437)
Q Consensus 118 ~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-------------~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wc 184 (437)
-|+.++|.|++. +.+...|...++.+.. ..|..-||.|++.+...-+....-.+.-.+..|.
T Consensus 443 l~ia~ff~~~~~-----~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~ 517 (1153)
T PLN03210 443 RHIACLFNGEKV-----NDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVD 517 (1153)
T ss_pred heehhhcCCCCH-----HHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeC
Confidence 356678998877 5566666666654422 3466778888887432211111112334577899
Q ss_pred HhhHHhhhhhccccCeEEEeeeecCCCCCCCCCCCccCCchhhhhhhhhc----------------ChHHHHHHHHhhhh
Q 013724 185 FDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKE----------------NSEKLQTWRNALKE 248 (437)
Q Consensus 185 l~EL~~il~c~~~~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~~~~~----------------~~e~l~~W~~aL~~ 248 (437)
.+|+..+++.. .+...+..++.+......... ..++|..+...... -.+.+......|+.
T Consensus 518 ~~di~~vl~~~-~g~~~v~~i~l~~~~~~~~~i---~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~ 593 (1153)
T PLN03210 518 AKDICDVLEDN-TGTKKVLGITLDIDEIDELHI---HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRL 593 (1153)
T ss_pred HHHHHHHHHhC-cccceeeEEEeccCccceeee---cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEE
Confidence 99998888764 455567777665443221111 11333333221100 00111111223444
Q ss_pred hhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCC-
Q 013724 249 KIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT- 326 (437)
Q Consensus 249 L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n- 326 (437)
|.+.++.. ... |..+ .+.+|+.|++.+|. +..+|..+ .+++|+.|+|++|..++.+|.++.+++|+.|+|++|
T Consensus 594 L~~~~~~l-~~l--P~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 594 LRWDKYPL-RCM--PSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCS 668 (1153)
T ss_pred EEecCCCC-CCC--CCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCC
Confidence 55544432 122 2222 35788888888887 77787777 788888888888877888888888888888888875
Q ss_pred CCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccch
Q 013724 327 AIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNF 381 (437)
Q Consensus 327 ~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~ 381 (437)
.+..+|..+++|++|+.|++++|..++.+|..+ ++++|+.|++++|..++.+|.
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 466888888888888888888888888888765 677888888888776666654
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.53 E-value=1.8e-14 Score=163.15 Aligned_cols=178 Identities=17% Similarity=0.117 Sum_probs=146.2
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
..|+.|++++|...+..+ ..+.++++|++|++++|.+.+.+|..+ .+++|+.|+|++|.+.+.+|. ++++++|+.|
T Consensus 164 ~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIP--NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCCCEEECccCcccccCC--hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 367889999887655443 356789999999999999777888888 899999999999988888887 8999999999
Q ss_pred EeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccch
Q 013724 322 FLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKF 400 (437)
Q Consensus 322 ~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~ 400 (437)
+|++|.+. .+|..++++++|+.|+|++|...+.+|..+.++++|++|++++|...+.+|..+.++++|+.|++.++...
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 99999988 78899999999999999999977889999999999999999999988899999999999999998665432
Q ss_pred hhccccccCCCcccccccccCCCCC
Q 013724 401 FVETSAASGDDWKSAFDAAADGPVK 425 (437)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~~~s~~~~ 425 (437)
...+.....++.++.+..+++.+
T Consensus 322 --~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 322 --GKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred --CcCChhHhcCCCCCEEECcCCCC
Confidence 22233334455666666655544
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=5.4e-14 Score=123.56 Aligned_cols=142 Identities=26% Similarity=0.327 Sum_probs=86.5
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEe
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL 323 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~L 323 (437)
++.|.++++......+ -+..+.+|++|++.+|+ ++.+|..+ .++.|+.|++.-|. +..+|. |+.++.|+.|||
T Consensus 35 ITrLtLSHNKl~~vpp---nia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPP---NIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhcccCceeecCC---cHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhc
Confidence 4455666654432222 34556677777777766 66677666 67777777776654 334454 677777777777
Q ss_pred eCCCCc--ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724 324 NGTAIE--ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF 394 (437)
Q Consensus 324 s~n~l~--~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~ 394 (437)
++|++. .+|..|..|+.|+-|+|++|. ...+|..++++++|+.|.+..|. +-++|..++.|+.|+.|.+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhc
Confidence 766665 456666666666666666655 55666666666666666666644 3356666666666655554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.33 E-value=5.2e-13 Score=136.76 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=130.1
Q ss_pred CccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccChhhcCCC
Q 013724 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSIECLY 339 (437)
Q Consensus 263 ~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~~i~~L~ 339 (437)
|.-+..+..|++|+|++|+ +.++|..+ .-+++-+|+|++|+ +..+|. +.+|+.|-+|||++|++..+|+.+..|.
T Consensus 96 P~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred Cchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 3345578999999999998 89999998 88899999999975 667776 8889999999999999999999999999
Q ss_pred CCCEEeccCCCC-------------------------CCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724 340 KLLHLDLEDCKS-------------------------LKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF 394 (437)
Q Consensus 340 ~L~~L~L~~n~~-------------------------l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~ 394 (437)
.|++|.|++|+. +..+|.++..|.+|..+|++.| .+..+|+++.++.+|+.|++
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNL 252 (1255)
T ss_pred hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheecc
Confidence 999999998852 1346777888888999999875 47889999999999999998
Q ss_pred ccccchhhccccccCCCcccccccccCCCCCCc
Q 013724 395 IYVYKFFVETSAASGDDWKSAFDAAADGPVKPS 427 (437)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~ 427 (437)
++.... ....+.+.|..+..+..+-+.+..
T Consensus 253 S~N~it---eL~~~~~~W~~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 253 SGNKIT---ELNMTEGEWENLETLNLSRNQLTV 282 (1255)
T ss_pred CcCcee---eeeccHHHHhhhhhhccccchhcc
Confidence 554433 333456678888888877776653
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=8.2e-14 Score=122.40 Aligned_cols=153 Identities=22% Similarity=0.256 Sum_probs=128.1
Q ss_pred ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCC-CCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP-DISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp-~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~ 345 (437)
.+.+.+.|.|++|+ ++.+|+.+ .+.+|++|++.+|+ +..+| .++.|++|+.|+++-|++..+|..||.++.|+.||
T Consensus 31 ~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 46778889999998 88889888 99999999999876 45555 59999999999999999999999999999999999
Q ss_pred ccCCCCC-CCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCC
Q 013724 346 LEDCKSL-KSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPV 424 (437)
Q Consensus 346 L~~n~~l-~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~ 424 (437)
|.+|+.. ..+|..+..++.|+.|+|+.|. ...+|..+++|++|+.|.+.+.... ..+....++..++.+.+-|++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll---~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLL---SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchh---hCcHHHHHHHHHHHHhcccce
Confidence 9998743 4689989999999999999865 6889999999999999987554433 233344566777888888877
Q ss_pred CC
Q 013724 425 KP 426 (437)
Q Consensus 425 ~~ 426 (437)
+.
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 66
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.23 E-value=2.8e-13 Score=138.71 Aligned_cols=111 Identities=20% Similarity=0.179 Sum_probs=68.6
Q ss_pred CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCC-CCccchhccCCCCCc
Q 013724 312 ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI-LQRLNFDIWSILPLV 390 (437)
Q Consensus 312 l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~-l~~lP~~l~~L~~L~ 390 (437)
+.++++|+.|+|++|.|+++-..++...+|++|+|+.|+ ++.||+.+++|+.|+.|.+.+|.. ...||..|++|..|+
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 333444444444444444433333333444444444444 566777777777777777766553 345777777777776
Q ss_pred eeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724 391 LTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 391 ~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
.+. ..+...+..+++...|.+++++..+++++-
T Consensus 320 vf~---aanN~LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 320 VFH---AANNKLELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred HHH---hhccccccCchhhhhhHHHHHhccccccee
Confidence 654 455566677888888888888888888765
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.06 E-value=6.9e-12 Score=123.05 Aligned_cols=150 Identities=25% Similarity=0.341 Sum_probs=115.8
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN 324 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls 324 (437)
+..+++.++......+ ..+. ++.|++|+...|- ++.+|+.+ .+..|.-|+|..|+ +..+|+|..+..|.+|+++
T Consensus 162 l~~l~~~~n~l~~l~~--~~i~-m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 162 LSKLDLEGNKLKALPE--NHIA-MKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSLLKELHVG 236 (565)
T ss_pred HHHhhccccchhhCCH--HHHH-HHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcc-cccCCCCCccHHHHHHHhc
Confidence 4445555554432221 2233 6778888887776 78888888 88888888888864 6677888888888888888
Q ss_pred CCCCcccChhhc-CCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhc
Q 013724 325 GTAIEELPSSIE-CLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVE 403 (437)
Q Consensus 325 ~n~l~~lp~~i~-~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~ 403 (437)
.|.|+-+|.+.. +|.+|.+|||+.|+ +++.|++++.+.+|++||+++|. +..+|..+++| +|+.|.+.+.+...++
T Consensus 237 ~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 237 ENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred ccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHH
Confidence 888888888765 89999999999988 99999999999999999998754 67899999999 8888887666555444
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.03 E-value=2.9e-12 Score=125.62 Aligned_cols=173 Identities=27% Similarity=0.266 Sum_probs=125.3
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFL 323 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L 323 (437)
.+..+.++++......+ -+.++..|.+|++++|+ +.++|+.+ .+..++.|+.++|++....++++.+.+|..|+.
T Consensus 46 ~l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhhccH---hhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 57778888876654433 25568889999999998 77788877 888888888888765444444888888888888
Q ss_pred eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhc
Q 013724 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVE 403 (437)
Q Consensus 324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~ 403 (437)
+.|.+.++|++++.+..|+.|+..+|+ +.++|+.+..+.+|..|++.+|. +..+|...-+++.|+.|+ |+....+
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld---~~~N~L~ 196 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLD---CNSNLLE 196 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcc---cchhhhh
Confidence 888888888888888888888887777 77788888888788778877755 445554444477777766 5555566
Q ss_pred cccccCCCcccccccccCCCCCC
Q 013724 404 TSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 404 ~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
..+.......++..++...+-+.
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc
Confidence 66666666666666665555444
No 14
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.01 E-value=1.4e-10 Score=95.29 Aligned_cols=82 Identities=27% Similarity=0.427 Sum_probs=69.9
Q ss_pred eeeccCCCcccCchHHHHHHHHhcCCceEEe----cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHHhhhhhc
Q 013724 120 VPTAIPSEDTRDNFTSHLYSALSQKSIETFI----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCK 195 (437)
Q Consensus 120 vf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~~il~c~ 195 (437)
|||||+.+|. .++..|...|+..|+.+|+ ..|+.+.+.+.++|++|+..|+++|++|..|.||..|+....+
T Consensus 1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 8999999996 7999999999999999999 6789999999999999999999999999999999999887733
Q ss_pred cccCeEEEeeee
Q 013724 196 RVYGQIVLPVFY 207 (437)
Q Consensus 196 ~~~~~~vlPiFy 207 (437)
.++.++|+..
T Consensus 77 --~~~~iipv~~ 86 (102)
T PF13676_consen 77 --RGKPIIPVRL 86 (102)
T ss_dssp --TSESEEEEEC
T ss_pred --CCCEEEEEEE
Confidence 4557999884
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=3.6e-10 Score=102.07 Aligned_cols=130 Identities=23% Similarity=0.294 Sum_probs=56.5
Q ss_pred ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhh-cCCCCCCEEe
Q 013724 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLD 345 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i-~~L~~L~~L~ 345 (437)
+..+++.|+|.+|. +..+..-- .+.+|+.|+|++|. +..++.+..+++|+.|++++|.|+.+.+.+ ..+++|+.|+
T Consensus 17 n~~~~~~L~L~~n~-I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTIENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-cccccchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34578999999998 66664333 57899999999985 556777888999999999999999997666 4699999999
Q ss_pred ccCCCCCCCCc--cccCCCCCCCEEeeeCCCCCCc---cchhccCCCCCceeecccccch
Q 013724 346 LEDCKSLKSLP--SGLCKLKSLKYLTLNGCSILQR---LNFDIWSILPLVLTTFIYVYKF 400 (437)
Q Consensus 346 L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~~l~~---lP~~l~~L~~L~~L~~~~~~~~ 400 (437)
+++|+ +..+- ..+..+++|+.|+|.+||.... -...+..+++|+.||...+...
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHH
Confidence 99998 65554 3467899999999999986543 2235788999999986544333
No 16
>PLN03150 hypothetical protein; Provisional
Probab=98.93 E-value=2.6e-09 Score=115.30 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=91.7
Q ss_pred ceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCc-ccChhhcCCCCCCEEecc
Q 013724 271 TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLE 347 (437)
Q Consensus 271 ~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~ 347 (437)
.++.|+|++|.+.+.+|..+ .+++|+.|+|++|.+.+.+|. ++.+++|+.|+|++|.++ .+|..+++|++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47888999988777888877 889999999999888888886 888999999999999888 788889999999999999
Q ss_pred CCCCCCCCccccCCC-CCCCEEeeeCCCCCCccc
Q 013724 348 DCKSLKSLPSGLCKL-KSLKYLTLNGCSILQRLN 380 (437)
Q Consensus 348 ~n~~l~~LP~~l~~L-~~L~~L~Ls~c~~l~~lP 380 (437)
+|...+.+|..++.+ .++..+++.+|+.+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 998888888887653 467788888887666554
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.92 E-value=1.1e-09 Score=112.07 Aligned_cols=178 Identities=20% Similarity=0.199 Sum_probs=105.5
Q ss_pred HHHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCC
Q 013724 242 WRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAAN 317 (437)
Q Consensus 242 W~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~ 317 (437)
...+|+.|+|+.|.. ..++.+.|. .-.++++|+|++|. ++.+.... .+.+|..|.|+.|. +..+|. |.+|++
T Consensus 147 ~l~alrslDLSrN~i-s~i~~~sfp-~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 147 ALPALRSLDLSRNLI-SEIPKPSFP-AKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPK 222 (873)
T ss_pred hHhhhhhhhhhhchh-hcccCCCCC-CCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcch
Confidence 345788888888654 334444432 23578888888887 66665444 77788888888865 445554 777888
Q ss_pred CCEEEeeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecc
Q 013724 318 IEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFI 395 (437)
Q Consensus 318 L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~ 395 (437)
|+.|+|..|.|..+ -..|..|++|+.|.|..|. +..|-++ |..|.++++|+|..|+...---.++..|+.|+.|+++
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence 88888888887754 3356666666666666665 4444433 4556666666666654332222345556666666543
Q ss_pred cccchhhccccccCCCcccccccccCCCCCC
Q 013724 396 YVYKFFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
+.... +....+.+.+.++..++.+.+.+.
T Consensus 302 ~NaI~--rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 302 YNAIQ--RIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhhh--eeecchhhhcccceeEeccccccc
Confidence 32222 222233334455566666665555
No 18
>PLN03150 hypothetical protein; Provisional
Probab=98.85 E-value=5.1e-09 Score=113.05 Aligned_cols=103 Identities=28% Similarity=0.370 Sum_probs=92.4
Q ss_pred CccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeee
Q 013724 294 FLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLN 371 (437)
Q Consensus 294 ~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls 371 (437)
.++.|+|++|.+.+.+|. ++.+++|+.|+|++|.+. .+|..++.|++|+.|+|++|...+.+|..+++|++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 478899999998888887 999999999999999998 899999999999999999999888999999999999999999
Q ss_pred CCCCCCccchhccCC-CCCceeeccc
Q 013724 372 GCSILQRLNFDIWSI-LPLVLTTFIY 396 (437)
Q Consensus 372 ~c~~l~~lP~~l~~L-~~L~~L~~~~ 396 (437)
+|...+.+|..++.+ .++..+++.+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CCcccccCChHHhhccccCceEEecC
Confidence 999999999988764 4556666543
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.83 E-value=7e-10 Score=113.51 Aligned_cols=146 Identities=23% Similarity=0.206 Sum_probs=75.4
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCC-CCCCCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR-LPDISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~-lp~l~~l~~L~~L 321 (437)
.+++|+|++|...+. .. ..+..+.+|..|.|+.|. ++.+|... .|++|+.|+|..|.+-.. .-.|.+|++|+.|
T Consensus 174 ni~~L~La~N~It~l-~~-~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 174 NIKKLNLASNRITTL-ET-GHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CceEEeecccccccc-cc-ccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 456677777654332 22 234456678888888887 66677655 577888888777643211 1124555555555
Q ss_pred EeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724 322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF 394 (437)
Q Consensus 322 ~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~ 394 (437)
.|..|.|..+-+ .|..|.++++|+|..|+ +..+. .++.+|++|+.|++++|.+-.--++.....++|+.|++
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 555555554432 23444455555555444 33322 23444444444444444333333333444444444443
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.81 E-value=7.1e-10 Score=118.68 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=112.8
Q ss_pred CccccccCceEEEeccCCCCCCCcCccC---------------------------CCCCccEEeeeCCCCCC-CCCCCCC
Q 013724 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI---------------------------HLEFLKELDLSGCSKLK-RLPDISS 314 (437)
Q Consensus 263 ~~~~~~l~~L~~L~Ls~n~~l~~lp~~~---------------------------~l~~L~~L~Ls~n~~~~-~lp~l~~ 314 (437)
+.+...+..|++|+|..|+ +..+|..+ .++.|+.|++.+|.+.. .+|.+.+
T Consensus 303 p~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 303 PPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred CCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 4456668899999999988 66666432 12346667777776554 3566788
Q ss_pred CCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceee
Q 013724 315 AANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTT 393 (437)
Q Consensus 315 l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~ 393 (437)
..+|+.|+|++|+|.++|. .+.++..|+.|+|++|+ ++.||..+.++..|++|...+| .+..+| .+.+++.|+.++
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEe
Confidence 8888888888888888886 46778888888888888 8888888888888888888764 466788 778888888888
Q ss_pred cccccchhhccccccCCCcccccccccCCCC
Q 013724 394 FIYVYKFFVETSAASGDDWKSAFDAAADGPV 424 (437)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~ 424 (437)
+ .|+++.....+ ....|+.++.++.+|+.
T Consensus 459 l-S~N~L~~~~l~-~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 L-SCNNLSEVTLP-EALPSPNLKYLDLSGNT 487 (1081)
T ss_pred c-ccchhhhhhhh-hhCCCcccceeeccCCc
Confidence 6 33333222222 23346778888888875
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.75 E-value=1.8e-09 Score=115.65 Aligned_cols=101 Identities=29% Similarity=0.372 Sum_probs=47.9
Q ss_pred CceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEec
Q 013724 270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL 346 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L 346 (437)
+.|+.|.+.+|.+....-+-+ .+++|++|+|++|. +..+|+ +.++..|+.|+|+||+++.||..+..+..|++|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 344455555554333222222 44555555555532 344443 44455555555555555555555555555555555
Q ss_pred cCCCCCCCCccccCCCCCCCEEeeeCC
Q 013724 347 EDCKSLKSLPSGLCKLKSLKYLTLNGC 373 (437)
Q Consensus 347 ~~n~~l~~LP~~l~~L~~L~~L~Ls~c 373 (437)
.+|. +..+| .+.+++.|+.+|++.|
T Consensus 438 hsN~-l~~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 438 HSNQ-LLSFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred cCCc-eeech-hhhhcCcceEEecccc
Confidence 4444 44444 3444555555555443
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.72 E-value=1.9e-08 Score=109.75 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=52.4
Q ss_pred CCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecc
Q 013724 316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFI 395 (437)
Q Consensus 316 ~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~ 395 (437)
.+|+.|+|++|.|+.+|.. .++|+.|++++|. +..+|.. ..+|+.|++++|. +..+|..+.++.+|..|++.
T Consensus 382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred cccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECC
Confidence 3677777777777777653 3567778888877 6667753 2456777887755 55788888888888888775
Q ss_pred ccc
Q 013724 396 YVY 398 (437)
Q Consensus 396 ~~~ 398 (437)
++.
T Consensus 454 ~N~ 456 (788)
T PRK15387 454 GNP 456 (788)
T ss_pred CCC
Confidence 543
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=2e-09 Score=109.99 Aligned_cols=123 Identities=28% Similarity=0.403 Sum_probs=57.7
Q ss_pred cccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~ 345 (437)
.++..|++|+|+.|. +..+|..+..--|++|-+++|+ ++.+|+ ++.++.|..|+.+.|.|..+|+.++.|.+|+.|+
T Consensus 118 ~~L~~lt~l~ls~Nq-lS~lp~~lC~lpLkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQ-LSHLPDGLCDLPLKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhhhHHHHhhhccch-hhcCChhhhcCcceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence 344445555555554 4444444422224555555433 333333 4444455555555555555555555555555555
Q ss_pred ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724 346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF 394 (437)
Q Consensus 346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~ 394 (437)
+..|. +..+|+.++.|+ |..||++. +++..||-+|.+|..|++|.+
T Consensus 196 vrRn~-l~~lp~El~~Lp-Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 196 VRRNH-LEDLPEELCSLP-LIRLDFSC-NKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred Hhhhh-hhhCCHHHhCCc-eeeeeccc-Cceeecchhhhhhhhheeeee
Confidence 55544 444444444332 44455543 334445555555555555443
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=2.4e-09 Score=101.98 Aligned_cols=132 Identities=27% Similarity=0.309 Sum_probs=98.3
Q ss_pred HHHHHHHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCC
Q 013724 238 KLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAA 316 (437)
Q Consensus 238 ~l~~W~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~ 316 (437)
.+..|. +|++++|++|...... ....-+|.++.|+++.|. +..+.....|++|+.|+|++|.+. .+.. -.+|.
T Consensus 279 ~~dTWq-~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLG 352 (490)
T KOG1259|consen 279 SADTWQ-ELTELDLSGNLITQID---ESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLG 352 (490)
T ss_pred ecchHh-hhhhccccccchhhhh---hhhhhccceeEEeccccc-eeeehhhhhcccceEeecccchhH-hhhhhHhhhc
Confidence 345676 6889999987553221 223446889999999998 555555338899999999997543 3333 34577
Q ss_pred CCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCc--cccCCCCCCCEEeeeCCCCCC
Q 013724 317 NIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP--SGLCKLKSLKYLTLNGCSILQ 377 (437)
Q Consensus 317 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~~l~ 377 (437)
|++.|.|++|.|..+ +.+++|.+|..||+++|+ +..+. ..|++|+.|++|.|.+|+..+
T Consensus 353 NIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred CEeeeehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccc
Confidence 899999999998877 468889999999999988 66664 458999999999999988543
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.68 E-value=2.3e-09 Score=105.53 Aligned_cols=84 Identities=24% Similarity=0.291 Sum_probs=41.3
Q ss_pred CCccEEeeeCCCCCCC----CCC-CCCCCCCCEEEeeCCCCc-----ccChhhcCCCCCCEEeccCCCCCC----CCccc
Q 013724 293 EFLKELDLSGCSKLKR----LPD-ISSAANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCKSLK----SLPSG 358 (437)
Q Consensus 293 ~~L~~L~Ls~n~~~~~----lp~-l~~l~~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~n~~l~----~LP~~ 358 (437)
++|+.|+|++|.+... ++. +..+++|+.|+|++|.++ .++..+..+++|+.|++++|.... .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 5566666666554421 111 344455666666665555 123334444566666666554211 12233
Q ss_pred cCCCCCCCEEeeeCCCCC
Q 013724 359 LCKLKSLKYLTLNGCSIL 376 (437)
Q Consensus 359 l~~L~~L~~L~Ls~c~~l 376 (437)
+..+++|++|++++|+..
T Consensus 217 ~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hcccCCCCEEecCCCcCc
Confidence 445555666666665433
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=1e-08 Score=92.56 Aligned_cols=122 Identities=28% Similarity=0.333 Sum_probs=53.5
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-C-CCCCCCCEEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-I-SSAANIEEMF 322 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l-~~l~~L~~L~ 322 (437)
.+++|+|.++....... ....+.+|+.|++++|. +..++..-.++.|+.|++++|.+. .+++ + ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~Ie~---L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN---LGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ----------------S-----TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccc---hhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 35678888876543221 22257899999999998 777765448999999999998654 4543 4 3689999999
Q ss_pred eeCCCCcccC--hhhcCCCCCCEEeccCCCCCCCCcc----ccCCCCCCCEEeeeC
Q 013724 323 LNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSLPS----GLCKLKSLKYLTLNG 372 (437)
Q Consensus 323 Ls~n~l~~lp--~~i~~L~~L~~L~L~~n~~l~~LP~----~l~~L~~L~~L~Ls~ 372 (437)
|++|+|..+- ..+..|++|+.|+|.+|+ +...+. .+..+++|+.||-..
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 9999998653 467789999999999999 555443 368899999998654
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.61 E-value=1.1e-07 Score=103.86 Aligned_cols=162 Identities=21% Similarity=0.136 Sum_probs=79.5
Q ss_pred HHHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEE
Q 013724 242 WRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEM 321 (437)
Q Consensus 242 W~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L 321 (437)
....|+.|++++|... ..+. .+++|+.|++++|. +..+|... ..|+.|++++|.+ ..+|.+ ..+|+.|
T Consensus 280 lp~~L~~L~Ls~N~Lt-~LP~-----~p~~L~~LdLS~N~-L~~Lp~lp--~~L~~L~Ls~N~L-~~LP~l--p~~Lq~L 347 (788)
T PRK15387 280 LPSGLCKLWIFGNQLT-SLPV-----LPPGLQELSVSDNQ-LASLPALP--SELCKLWAYNNQL-TSLPTL--PSGLQEL 347 (788)
T ss_pred chhhcCEEECcCCccc-cccc-----cccccceeECCCCc-cccCCCCc--ccccccccccCcc-cccccc--ccccceE
Confidence 3345556666665433 2211 13567777777776 44555421 2333444444332 223321 1244444
Q ss_pred EeeCCCCcccChhhc-----------------CCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhcc
Q 013724 322 FLNGTAIEELPSSIE-----------------CLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIW 384 (437)
Q Consensus 322 ~Ls~n~l~~lp~~i~-----------------~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~ 384 (437)
+|++|+|+.+|.... .+.+|+.|+|++|. +..+|.. .++|+.|++++|. +..+|..+
T Consensus 348 dLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~-Lt~LP~l---~s~L~~LdLS~N~-LssIP~l~- 421 (788)
T PRK15387 348 SVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR-LTSLPVL---PSELKELMVSGNR-LTSLPMLP- 421 (788)
T ss_pred ecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCc-ccCCCCc---ccCCCEEEccCCc-CCCCCcch-
Confidence 444444444443111 12356666666665 5556543 2456677777765 44566433
Q ss_pred CCCCCceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724 385 SILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 385 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
.+|+.|++.++.. ...+.....+..+..+..++|.+.
T Consensus 422 --~~L~~L~Ls~NqL---t~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 422 --SGLLSLSVYRNQL---TRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred --hhhhhhhhccCcc---cccChHHhhccCCCeEECCCCCCC
Confidence 2344555433322 233444455666777777776655
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=5.6e-09 Score=99.48 Aligned_cols=125 Identities=22% Similarity=0.223 Sum_probs=103.6
Q ss_pred cCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEecc
Q 013724 269 LNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLE 347 (437)
Q Consensus 269 l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~ 347 (437)
...|+.|+|++|. +..+..++ -++.++.|++++|. +..+..+..|++|..|||++|.++++...-.+|-+.+.|.|.
T Consensus 283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 4568999999998 88888888 77999999999986 445556888999999999999999887766788899999999
Q ss_pred CCCCCCCCccccCCCCCCCEEeeeCCCCCCccc--hhccCCCCCceeeccccc
Q 013724 348 DCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLN--FDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 348 ~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP--~~l~~L~~L~~L~~~~~~ 398 (437)
+|. +.++ .++++|-+|..||+++|+ +..+. ..+++|+.|+.+.+.+.+
T Consensus 361 ~N~-iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 QNK-IETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhh-Hhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 988 7777 568899999999999976 44443 468999999988775543
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.58 E-value=7.4e-08 Score=105.35 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=41.5
Q ss_pred CCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecc
Q 013724 316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFI 395 (437)
Q Consensus 316 ~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~ 395 (437)
++|+.|++++|.++.+|..+. ++|+.|+|++|+ +..+|..+. ++|+.|+|++|. +..+|..+. ..|+.|++.
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs 396 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRNA-LTNLPENLP--AALQIMQAS 396 (754)
T ss_pred ccceeccccCCccccCChhhc--CcccEEECCCCC-CCcCChhhc--CCcCEEECCCCc-CCCCCHhHH--HHHHHHhhc
Confidence 456666666666666655442 466666666665 555665442 466666666654 335665543 245555544
Q ss_pred cc
Q 013724 396 YV 397 (437)
Q Consensus 396 ~~ 397 (437)
++
T Consensus 397 ~N 398 (754)
T PRK15370 397 RN 398 (754)
T ss_pred cC
Confidence 43
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.57 E-value=3e-08 Score=110.04 Aligned_cols=132 Identities=30% Similarity=0.338 Sum_probs=105.9
Q ss_pred ccCceEEEeccCCCC-CCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCE
Q 013724 268 HLNTLVVLNLRDCKS-LKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLH 343 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~-l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~ 343 (437)
.++.|+.|-+..|.. +..++..+ .++.|++|||++|...+.+|. ++.|-+|++|+|+++.++.+|..+++|..|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 345788888888852 55566654 899999999999999999998 99999999999999999999999999999999
Q ss_pred EeccCCCCCCCCccccCCCCCCCEEeeeCCC--CCCccchhccCCCCCceeecccccc
Q 013724 344 LDLEDCKSLKSLPSGLCKLKSLKYLTLNGCS--ILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 344 L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~--~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
|++..+..+..+|..+..|++|++|.+..-. .....-..+.+|++|+.+....++.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence 9999998888888777889999999997643 1222334456667776666544433
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.57 E-value=1.4e-07 Score=103.28 Aligned_cols=136 Identities=20% Similarity=0.227 Sum_probs=79.0
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEe
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL 323 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~L 323 (437)
.++.|++++|... ..+. .+ +.+|+.|++++|. +..+|..+ ..+|+.|+|++|.+. .+|. +. .+|+.|+|
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~--~l--~~nL~~L~Ls~N~-LtsLP~~l-~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELK-SLPE--NL--QGNIKTLYANSNQ-LTSIPATL-PDTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCC-cCCh--hh--ccCCCEEECCCCc-cccCChhh-hccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 3556666665433 2221 11 2466777777766 55666543 235677777776533 4554 32 36777777
Q ss_pred eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~ 398 (437)
++|+|+.+|..+. .+|+.|+|++|+ +..+|..+. ++|+.|++++|. +..+|..+. .+|+.|++.+|.
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N~ 336 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETLP--PGLKTLEAGENA 336 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCcccc--ccceeccccCCc
Confidence 7777777766543 467777777776 566665442 356777777654 334665433 467777765554
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.56 E-value=3e-08 Score=97.60 Aligned_cols=134 Identities=21% Similarity=0.164 Sum_probs=99.2
Q ss_pred ccccCceEEEeccCCCCCCCcCccC-CC---CCccEEeeeCCCCCCC----CCC-CCCC-CCCCEEEeeCCCCc-----c
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HL---EFLKELDLSGCSKLKR----LPD-ISSA-ANIEEMFLNGTAIE-----E 330 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~-~l---~~L~~L~Ls~n~~~~~----lp~-l~~l-~~L~~L~Ls~n~l~-----~ 330 (437)
+..+++|+.|++++|.+....+..+ .+ ++|+.|++++|..... +.. +..+ ++|+.|+|++|.++ .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 3457799999999998554444444 33 4499999999876531 122 4556 89999999999988 3
Q ss_pred cChhhcCCCCCCEEeccCCCCCC----CCccccCCCCCCCEEeeeCCCCCC----ccchhccCCCCCceeecccccc
Q 013724 331 LPSSIECLYKLLHLDLEDCKSLK----SLPSGLCKLKSLKYLTLNGCSILQ----RLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 331 lp~~i~~L~~L~~L~L~~n~~l~----~LP~~l~~L~~L~~L~Ls~c~~l~----~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
++..+..+++|+.|++++|...+ .++..+..+++|++|++++|...+ .++..+..+++|+.|++.+|..
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 45567788899999999998442 344556677899999999987543 3556677889999999987653
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.52 E-value=2e-08 Score=102.85 Aligned_cols=146 Identities=24% Similarity=0.261 Sum_probs=114.2
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEE
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~ 322 (437)
.+|+.++|+.|.+.. .+. .+..|+ |++|-+++|+ ++.+|..+ .+.+|..|+.+.|.+....+.++.+.+|+.|+
T Consensus 121 ~~lt~l~ls~NqlS~-lp~--~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 121 EALTFLDLSSNQLSH-LPD--GLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred hHHHHhhhccchhhc-CCh--hhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence 467788888775542 232 234444 8999999998 89999999 78899999999987665555699999999999
Q ss_pred eeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCC---Cceeecccc
Q 013724 323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILP---LVLTTFIYV 397 (437)
Q Consensus 323 Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~---L~~L~~~~~ 397 (437)
+..|++..+|+++.. -.|..||++.|+ +..||-.|.+|+.|++|-|.+|+ +++-|..|...-+ .+.|+...|
T Consensus 196 vrRn~l~~lp~El~~-LpLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 196 VRRNHLEDLPEELCS-LPLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HhhhhhhhCCHHHhC-CceeeeecccCc-eeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 999999999999884 468999999888 89999999999999999998877 5666766544333 345554445
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=2.4e-07 Score=68.63 Aligned_cols=58 Identities=33% Similarity=0.561 Sum_probs=37.1
Q ss_pred CCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCC
Q 013724 316 ANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCS 374 (437)
Q Consensus 316 ~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~ 374 (437)
++|++|+|++|+|+.+|. .+..+++|++|++++|. +..+| ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 356666777666666664 45667777777777666 44544 345667777777776664
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=1.3e-07 Score=96.47 Aligned_cols=122 Identities=32% Similarity=0.417 Sum_probs=52.7
Q ss_pred ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~ 345 (437)
.+++|+.|++++|. +..+|... .++.|+.|++++|+ +..+|. +..+.+|++|.+++|.+..++..+.++.+|..|.
T Consensus 161 ~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 161 NLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE 238 (394)
T ss_pred ccccccccccCCch-hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence 34444444444444 34444433 44444444444432 223333 2233334444444444334444444444444444
Q ss_pred ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724 346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF 394 (437)
Q Consensus 346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~ 394 (437)
+.+|+ +..++..++.+++|++|++++|. +..++. ++.+.+|+.|++
T Consensus 239 l~~n~-~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~ 284 (394)
T COG4886 239 LSNNK-LEDLPESIGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDL 284 (394)
T ss_pred cCCce-eeeccchhccccccceecccccc-cccccc-ccccCccCEEec
Confidence 44443 33334444555555555555432 333333 444555555543
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.30 E-value=4e-07 Score=92.88 Aligned_cols=171 Identities=29% Similarity=0.311 Sum_probs=119.6
Q ss_pred hhhhhhcccCcccCCCCCCccccccC-ceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLN-TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~-~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.++.+++..++..... .....+. +|+.|++++|. +..+|..+ .+++|+.|++++|+ +..+|. .+.+++|+.|
T Consensus 117 ~l~~L~l~~n~i~~i~---~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 117 NLTSLDLDNNNITDIP---PLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ceeEEecCCcccccCc---cccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhhe
Confidence 4556666655443222 2233443 88999999988 77777556 88899999999876 444555 4588889999
Q ss_pred EeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchh
Q 013724 322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFF 401 (437)
Q Consensus 322 ~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~ 401 (437)
++++|.+..+|..++.+..|+.|.+++|. ...++..+.+++++..|.+.+| .+..++..++.+.+|+.|++..+....
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCc-eeeeccchhccccccceeccccccccc
Confidence 99999999998888788889999999886 4556667888888888887664 455567788888888888864443332
Q ss_pred hccccccCCCcccccccccCCCCCC
Q 013724 402 VETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 402 ~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
... ......+..++.+++.+.
T Consensus 270 i~~----~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 270 ISS----LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccc----ccccCccCEEeccCcccc
Confidence 222 344556667776665443
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.30 E-value=1.2e-06 Score=88.65 Aligned_cols=88 Identities=25% Similarity=0.554 Sum_probs=60.6
Q ss_pred HHHHHHHHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCC
Q 013724 237 EKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAA 316 (437)
Q Consensus 237 e~l~~W~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~ 316 (437)
..+..| ..++.|+++.|.. ...+ .+ -.+|+.|.+.+|..+..+|..+ ..+|+.|+|++|..+..+| .
T Consensus 46 ~r~~~~-~~l~~L~Is~c~L-~sLP--~L---P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP-----~ 112 (426)
T PRK15386 46 PQIEEA-RASGRLYIKDCDI-ESLP--VL---PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP-----E 112 (426)
T ss_pred HHHHHh-cCCCEEEeCCCCC-cccC--CC---CCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc-----c
Confidence 345556 5688899998843 3333 11 2469999999988888888654 4689999999996666665 3
Q ss_pred CCCEEEeeCCC---CcccChhhcC
Q 013724 317 NIEEMFLNGTA---IEELPSSIEC 337 (437)
Q Consensus 317 ~L~~L~Ls~n~---l~~lp~~i~~ 337 (437)
+|+.|+|.++. +..+|+++..
T Consensus 113 sLe~L~L~~n~~~~L~~LPssLk~ 136 (426)
T PRK15386 113 SVRSLEIKGSATDSIKNVPNGLTS 136 (426)
T ss_pred ccceEEeCCCCCcccccCcchHhh
Confidence 57778887755 4466765443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=7.3e-07 Score=66.05 Aligned_cols=57 Identities=30% Similarity=0.447 Sum_probs=41.1
Q ss_pred CCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCC
Q 013724 293 EFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCK 350 (437)
Q Consensus 293 ~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~ 350 (437)
++|++|+|++|+ +..+|. |..+++|++|+|++|.|+.+++ .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467777777764 334443 7778888888888888887754 66788888888888776
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=9.8e-08 Score=95.18 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=93.7
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCC-cCccC-CCCCccEEeeeCCCCCCCC-CCCCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS-LPAGI-HLEFLKELDLSGCSKLKRL-PDISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~-lp~~~-~l~~L~~L~Ls~n~~~~~l-p~l~~l~~L~~L 321 (437)
.|+.|+|+.|......... ....+++|+.|.|+.|.+... +-... .+++|+.|+|.+|..+... -....+..|+.|
T Consensus 173 ~Le~LNls~Nrl~~~~~s~-~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L 251 (505)
T KOG3207|consen 173 SLENLNLSSNRLSNFISSN-TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL 251 (505)
T ss_pred cchhcccccccccCCcccc-chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence 5666888777554332221 123577888888988883311 11111 7889999999888532221 124446779999
Q ss_pred EeeCCCCcccC--hhhcCCCCCCEEeccCCCCCCCC--ccc-----cCCCCCCCEEeeeCCCCCCccc--hhccCCCCCc
Q 013724 322 FLNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSL--PSG-----LCKLKSLKYLTLNGCSILQRLN--FDIWSILPLV 390 (437)
Q Consensus 322 ~Ls~n~l~~lp--~~i~~L~~L~~L~L~~n~~l~~L--P~~-----l~~L~~L~~L~Ls~c~~l~~lP--~~l~~L~~L~ 390 (437)
+|++|.+..++ ..++.|+.|+.|+++.|. +.++ |+. ...+++|++|++..|+. ..++ ..+..+.+|+
T Consensus 252 dLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 252 DLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHLRTLENLK 329 (505)
T ss_pred cccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCcc-ccccccchhhccchhh
Confidence 99999888776 567889999999999887 5443 433 35678899999998774 2333 1344445555
Q ss_pred eee
Q 013724 391 LTT 393 (437)
Q Consensus 391 ~L~ 393 (437)
.|.
T Consensus 330 ~l~ 332 (505)
T KOG3207|consen 330 HLR 332 (505)
T ss_pred hhh
Confidence 554
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.22 E-value=7.9e-07 Score=98.90 Aligned_cols=128 Identities=27% Similarity=0.326 Sum_probs=105.5
Q ss_pred cCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCC-CCCCCC--CCCCCCCCEEEeeCC-CCcccChhhcCCCCCCEE
Q 013724 269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSK-LKRLPD--ISSAANIEEMFLNGT-AIEELPSSIECLYKLLHL 344 (437)
Q Consensus 269 l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~-~~~lp~--l~~l~~L~~L~Ls~n-~l~~lp~~i~~L~~L~~L 344 (437)
....+.+.+-+|. +..++.....+.|+.|-+..|.. +..++. |..|+.|+.|||++| .+.++|..|+.|-+|++|
T Consensus 522 ~~~~rr~s~~~~~-~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 522 WNSVRRMSLMNNK-IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hhheeEEEEeccc-hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 3456667776666 55666666777899999988763 445554 788999999999975 567999999999999999
Q ss_pred eccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724 345 DLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 345 ~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~ 398 (437)
+++++. +..||.++++|+.|.+|++..+..+..+|..+..|.+|++|.+..-.
T Consensus 601 ~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999988 88999999999999999999988888888777889999999875443
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=4e-06 Score=84.91 Aligned_cols=115 Identities=31% Similarity=0.508 Sum_probs=79.2
Q ss_pred ccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCC-CCcccChhhcCCCCCCEEe
Q 013724 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGT-AIEELPSSIECLYKLLHLD 345 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n-~l~~lp~~i~~L~~L~~L~ 345 (437)
.+.+++.|++++|. +..+|. ...+|+.|.+++|..+..+|+ + ..+|+.|++++| .+..+|.. |+.|+
T Consensus 50 ~~~~l~~L~Is~c~-L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCD-IESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCC-CcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence 35778899999996 888883 234699999999888888886 4 368999999987 77778764 44455
Q ss_pred ccCC--CCCCCCccccCCC------------------CCCCEEeeeCCCCCCccchhccCCCCCceeeccc
Q 013724 346 LEDC--KSLKSLPSGLCKL------------------KSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIY 396 (437)
Q Consensus 346 L~~n--~~l~~LP~~l~~L------------------~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~ 396 (437)
+..+ ..++.+|.++..| ++|++|++++|..+ .+|..+. .+|+.|.+..
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 5443 3366777665444 37889999988855 3444333 3666666543
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.3e-07 Score=91.52 Aligned_cols=107 Identities=23% Similarity=0.297 Sum_probs=43.2
Q ss_pred cccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCC-CCC-CCCCCCCCEEEeeCCC-CcccChhhcCCCCC
Q 013724 267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR-LPD-ISSAANIEEMFLNGTA-IEELPSSIECLYKL 341 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~-lp~-l~~l~~L~~L~Ls~n~-l~~lp~~i~~L~~L 341 (437)
..|++|+.|+|+.|.+.-...... .+.+|+.|.|+.|.+... +-. +..+|+|+.|+|..|. +..--.+...+..|
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 344555555555544221111111 344455555555543311 111 2234455555555442 11111122234455
Q ss_pred CEEeccCCCCCCCCc--cccCCCCCCCEEeeeCCC
Q 013724 342 LHLDLEDCKSLKSLP--SGLCKLKSLKYLTLNGCS 374 (437)
Q Consensus 342 ~~L~L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~ 374 (437)
+.|+|++|+ +-.++ ..++.++.|..|+++.|.
T Consensus 249 ~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 249 QELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred hhccccCCc-ccccccccccccccchhhhhccccC
Confidence 555555555 33333 224455555555555543
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=5.8e-06 Score=57.10 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=26.4
Q ss_pred CCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCc
Q 013724 316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP 356 (437)
Q Consensus 316 ~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP 356 (437)
++|++|+|++|+|+.+|+.+++|++|+.|++++|+ +.++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 35777777777777777667777777777777776 55543
No 44
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.98 E-value=5.8e-07 Score=88.75 Aligned_cols=100 Identities=29% Similarity=0.344 Sum_probs=46.9
Q ss_pred eEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeC-CCCcccCh-hhcCCCCCCEEec
Q 013724 272 LVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNG-TAIEELPS-SIECLYKLLHLDL 346 (437)
Q Consensus 272 L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~-n~l~~lp~-~i~~L~~L~~L~L 346 (437)
-+.++|..|. +..+|+.. .+++|+.|+|++|++...-|+ |.++.+|..|-+.+ |+|+.+|. .|+.|.+|+.|.+
T Consensus 69 tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 4455555554 55555444 555555555555544443343 55555555554444 55555553 3444444444444
Q ss_pred cCCCCCCCCccccCCCCCCCEEeeeC
Q 013724 347 EDCKSLKSLPSGLCKLKSLKYLTLNG 372 (437)
Q Consensus 347 ~~n~~l~~LP~~l~~L~~L~~L~Ls~ 372 (437)
.-|+......+.+..|++|..|.+..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccc
Confidence 44442222223344444444444433
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=4.2e-07 Score=77.66 Aligned_cols=79 Identities=20% Similarity=0.319 Sum_probs=38.7
Q ss_pred CceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEec
Q 013724 270 NTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL 346 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L 346 (437)
.+|+..+|++|. +..+|..+ .++.++.|+|++|. +..+|. +..|+.|+.|+++.|.+...|..+..|.+|-.|+.
T Consensus 53 ~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 345555555555 44455444 44455555555543 333343 44455555555555555544444444555555554
Q ss_pred cCCC
Q 013724 347 EDCK 350 (437)
Q Consensus 347 ~~n~ 350 (437)
.+|.
T Consensus 131 ~~na 134 (177)
T KOG4579|consen 131 PENA 134 (177)
T ss_pred CCCc
Confidence 4444
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.93 E-value=1.8e-06 Score=85.30 Aligned_cols=137 Identities=19% Similarity=0.199 Sum_probs=102.8
Q ss_pred CCCcCccCCCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCccc-
Q 013724 283 LKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG- 358 (437)
Q Consensus 283 l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~~- 358 (437)
+..+|..+ -+.-..|+|..|. +..+|+ |+.+++|+.|||+.|.|+.| |..|..|.+|..|.+.+|+.++.+|..
T Consensus 58 L~eVP~~L-P~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 58 LTEVPANL-PPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cccCcccC-CCcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 56677654 2356678888875 566665 99999999999999999987 778999999999999886669999965
Q ss_pred cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCC
Q 013724 359 LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGP 423 (437)
Q Consensus 359 l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ 423 (437)
|++|.+|+.|.+.-|...-...+.+..|++|..|.+++.. ....++........++.+...-+
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~--~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK--IQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh--hhhhccccccchhccchHhhhcC
Confidence 7999999999998877665666778999999888875433 33344444555555555444333
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=4.9e-05 Score=69.17 Aligned_cols=124 Identities=21% Similarity=0.305 Sum_probs=85.5
Q ss_pred CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcC-CCCCCEEeccCCCCCCCCcc--ccCCCCCCCE
Q 013724 291 HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIEC-LYKLLHLDLEDCKSLKSLPS--GLCKLKSLKY 367 (437)
Q Consensus 291 ~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~-L~~L~~L~L~~n~~l~~LP~--~l~~L~~L~~ 367 (437)
.+.+...++|++|. +..++.|..++.|.+|.|++|+|+.|.+.+.. +++|..|.|.+|. +..+-+ .+..|+.|++
T Consensus 40 ~~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 40 TLDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccccceecccccc-hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccce
Confidence 45567788888864 55667788888899999999999888766655 5678899988887 555432 3567888999
Q ss_pred EeeeCCCCCCc---cchhccCCCCCceeecccccchhhc------cccccCCCccccc
Q 013724 368 LTLNGCSILQR---LNFDIWSILPLVLTTFIYVYKFFVE------TSAASGDDWKSAF 416 (437)
Q Consensus 368 L~Ls~c~~l~~---lP~~l~~L~~L~~L~~~~~~~~~~~------~~~~~~~~~~~l~ 416 (437)
|.+-+|+.... --..+..+++|++|++......-.+ ......+.|+++.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f~~k~~k~~~~~i~ 175 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVFFKGKKGKKAAKSIN 175 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHHHhccccchhhhhhhh
Confidence 98888874432 2235778889999988654333111 1234455566665
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.75 E-value=1.7e-06 Score=74.09 Aligned_cols=107 Identities=21% Similarity=0.333 Sum_probs=85.9
Q ss_pred eEEEeccCCCCCCCcCccC----CCCCccEEeeeCCCCCCCCCC-CC-CCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724 272 LVVLNLRDCKSLKSLPAGI----HLEFLKELDLSGCSKLKRLPD-IS-SAANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (437)
Q Consensus 272 L~~L~Ls~n~~l~~lp~~~----~l~~L~~L~Ls~n~~~~~lp~-l~-~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~ 345 (437)
+..++|+.|. +..++... ....|+..+|++|. ...+|. |. ..+.+..|+|++|.|+.+|.++..++.|+.|+
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4567788887 66666554 55678888999975 555665 54 45689999999999999999999999999999
Q ss_pred ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchh
Q 013724 346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFD 382 (437)
Q Consensus 346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~ 382 (437)
++.|+ +...|.-+..|.+|-.|+..+|. ..+||..
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 99999 78888888889999999987754 5667765
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.8e-06 Score=82.58 Aligned_cols=152 Identities=22% Similarity=0.243 Sum_probs=91.5
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC---CCCCccEEeeeCCCCCCCCCC--CCC-CCCC
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPD--ISS-AANI 318 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~---~l~~L~~L~Ls~n~~~~~lp~--l~~-l~~L 318 (437)
.|+.+.|.+...-..+.. .+..-.+|+.|+|+.|..++...... .|+.|..|+|++|......-. +.+ -++|
T Consensus 211 kLk~lSlEg~~LdD~I~~--~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVN--TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred hhhhccccccccCcHHHH--HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 455555555443322221 23344678888888887555443333 778888888888865543221 222 3567
Q ss_pred CEEEeeCCC----CcccChhhcCCCCCCEEeccCCCCCCC-CccccCCCCCCCEEeeeCCCCCCccchh---ccCCCCCc
Q 013724 319 EEMFLNGTA----IEELPSSIECLYKLLHLDLEDCKSLKS-LPSGLCKLKSLKYLTLNGCSILQRLNFD---IWSILPLV 390 (437)
Q Consensus 319 ~~L~Ls~n~----l~~lp~~i~~L~~L~~L~L~~n~~l~~-LP~~l~~L~~L~~L~Ls~c~~l~~lP~~---l~~L~~L~ 390 (437)
..|+|+|+. .+.+..-..++++|.+|||++|..++. .-..+.+++.|++|.++.|..+ +|.. +...++|.
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLV 366 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceE
Confidence 888888742 112333346688888888888775544 1234567788888888888633 4443 45667778
Q ss_pred eeecccccch
Q 013724 391 LTTFIYVYKF 400 (437)
Q Consensus 391 ~L~~~~~~~~ 400 (437)
+|+..+|..-
T Consensus 367 yLdv~g~vsd 376 (419)
T KOG2120|consen 367 YLDVFGCVSD 376 (419)
T ss_pred EEEeccccCc
Confidence 8877766443
No 50
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.71 E-value=7.8e-05 Score=75.04 Aligned_cols=88 Identities=16% Similarity=0.271 Sum_probs=69.5
Q ss_pred CCCCceeeccCCCcccCchHHHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccc--------cc
Q 013724 115 DSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYA--------SS 181 (437)
Q Consensus 115 ~~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~--------sS 181 (437)
.++.|||||||...- +...+.+.-.|+-+|+++|| ..|+.- ..|++.|++.|.+|.|++||.. .-
T Consensus 610 skq~DVFISYRRstG-nQLASLiKV~LQL~GyrVFIDVdKL~AGKFd-ssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 610 SKQIDVFISYRRSTG-NQLASLIKVLLQLRGYRVFIDVDKLYAGKFD-SSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred cCCcceEEEeecccc-HHHHHHHHHHHHhcCceEEEehhhhhccccc-HHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence 457899999985543 45666666667779999999 457765 5899999999999999999974 56
Q ss_pred cccHhhHHhhhhhccccCeEEEeeeec
Q 013724 182 RWFFDKLVKILQCKRVYGQIVLPVFYG 208 (437)
Q Consensus 182 ~Wcl~EL~~il~c~~~~~~~vlPiFy~ 208 (437)
.|-+.||+-.++|.+ -|+|||-.
T Consensus 688 DWVHKEl~~Afe~~K----NIiPI~D~ 710 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQK----NIIPIFDT 710 (832)
T ss_pred HHHHHHHHHHHHhcC----Ceeeeecc
Confidence 788888888888753 48888754
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.62 E-value=1.5e-05 Score=79.59 Aligned_cols=183 Identities=20% Similarity=0.220 Sum_probs=135.9
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC---CCCCccEEeeeCCCCCCCCC--C-CCCCCCC
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLP--D-ISSAANI 318 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~---~l~~L~~L~Ls~n~~~~~lp--~-l~~l~~L 318 (437)
.+.++++..|+.++..........+..|++|..++|..++..+-.- +..+|++|-|+.|+..+..- . -.+.+.|
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 4556677788776655433334567889999999998655433222 78999999999998755432 2 3457899
Q ss_pred CEEEeeCCCCc---ccChhhcCCCCCCEEeccCCCCCCCC-----ccccCCCCCCCEEeeeCCCCCCc-cchhccCCCCC
Q 013724 319 EEMFLNGTAIE---ELPSSIECLYKLLHLDLEDCKSLKSL-----PSGLCKLKSLKYLTLNGCSILQR-LNFDIWSILPL 389 (437)
Q Consensus 319 ~~L~Ls~n~l~---~lp~~i~~L~~L~~L~L~~n~~l~~L-----P~~l~~L~~L~~L~Ls~c~~l~~-lP~~l~~L~~L 389 (437)
+.|++...... ++-..-.+++.|+.|.|+.|..++.. ...-..+..|+.|.|++|+.+.. .-+.+....+|
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 99999886554 34444467899999999999866554 33346677899999999997654 33456777899
Q ss_pred ceeecccccchhhccccccCCCcccccccccCCCCCCc
Q 013724 390 VLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPS 427 (437)
Q Consensus 390 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~ 427 (437)
+.+++++|.....+....-...++.++.....+|+.+.
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p 466 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPP 466 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCc
Confidence 99999999999888887777778888888888888874
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=0.00012 Score=66.66 Aligned_cols=102 Identities=25% Similarity=0.295 Sum_probs=72.4
Q ss_pred CceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCC-CCCCCCEEEeeCCCCcccCh--hhcCCCCCCEEec
Q 013724 270 NTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDIS-SAANIEEMFLNGTAIEELPS--SIECLYKLLHLDL 346 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~-~l~~L~~L~Ls~n~l~~lp~--~i~~L~~L~~L~L 346 (437)
.+...++|++|. +..++..-.++.|..|.|.+|.++..-|.+. .+++|..|.|.+|+|.++-+ .+..|++|++|.+
T Consensus 42 d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccc-hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 355677888887 6555544477888888888877666666644 46778888888888886642 4567788888888
Q ss_pred cCCCCCCCCcc----ccCCCCCCCEEeeeCC
Q 013724 347 EDCKSLKSLPS----GLCKLKSLKYLTLNGC 373 (437)
Q Consensus 347 ~~n~~l~~LP~----~l~~L~~L~~L~Ls~c 373 (437)
-+|+ ....+. .++.+++|+.||+++-
T Consensus 121 l~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 8887 444432 3678888888888653
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=4.3e-05 Score=83.17 Aligned_cols=81 Identities=27% Similarity=0.339 Sum_probs=39.6
Q ss_pred CCCCccEEeeeCCCCCC-CCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCc--cccCCCCCCC
Q 013724 291 HLEFLKELDLSGCSKLK-RLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP--SGLCKLKSLK 366 (437)
Q Consensus 291 ~l~~L~~L~Ls~n~~~~-~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP--~~l~~L~~L~ 366 (437)
.||.|+.|.+++-.+.. ++-. ..+++||..||+++++++.+ ..+++|++|+.|.+.+-. ...-. ..+.+|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCC
Confidence 45556655555532211 1122 33455666666666655555 455556666665555433 11111 1245556666
Q ss_pred EEeeeCC
Q 013724 367 YLTLNGC 373 (437)
Q Consensus 367 ~L~Ls~c 373 (437)
.||+|.-
T Consensus 224 vLDIS~~ 230 (699)
T KOG3665|consen 224 VLDISRD 230 (699)
T ss_pred eeecccc
Confidence 6666553
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=8.4e-05 Score=51.25 Aligned_cols=40 Identities=33% Similarity=0.494 Sum_probs=29.6
Q ss_pred CCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh
Q 013724 293 EFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS 333 (437)
Q Consensus 293 ~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~ 333 (437)
++|++|+|++|++. .+|. +.+|++|+.|++++|.|+.+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46888888887644 5666 8888888888888888887653
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.49 E-value=3.5e-06 Score=88.93 Aligned_cols=103 Identities=33% Similarity=0.389 Sum_probs=59.6
Q ss_pred ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCC-CCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSA-ANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l-~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~ 345 (437)
-++.|+.|+|++|+ ...+- .+ .|+.|++|||++|. +..+|.++.- -+|+.|+|++|.++++- .+.+|.+|+.||
T Consensus 185 ll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccc
Confidence 35666777777776 43343 23 66777777777753 4555553321 13777777777766653 466677777777
Q ss_pred ccCCCCCCCCc--cccCCCCCCCEEeeeCCCC
Q 013724 346 LEDCKSLKSLP--SGLCKLKSLKYLTLNGCSI 375 (437)
Q Consensus 346 L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~~ 375 (437)
+++|- +.... .-++.|..|+.|.|.||+.
T Consensus 261 lsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 261 LSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 77665 22211 1234556666777777663
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.46 E-value=3.8e-05 Score=79.17 Aligned_cols=105 Identities=30% Similarity=0.411 Sum_probs=71.7
Q ss_pred ccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEE
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL 344 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 344 (437)
+..+.+|+.|++.+|. +..+...+ .+++|++|+|++|. +..+..+..++.|+.|++.+|.|+.+. .+..+++|+.|
T Consensus 91 l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccc-hhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 3456777888888877 66665534 67788888888764 555566666777888888888877664 34557778888
Q ss_pred eccCCCCCCCCccc-cCCCCCCCEEeeeCCC
Q 013724 345 DLEDCKSLKSLPSG-LCKLKSLKYLTLNGCS 374 (437)
Q Consensus 345 ~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~ 374 (437)
++++|. +..++.. +..+.+|+.+.+.+|.
T Consensus 168 ~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 168 DLSYNR-IVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cCCcch-hhhhhhhhhhhccchHHHhccCCc
Confidence 888777 4444432 4666777777777764
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.00011 Score=70.64 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=84.9
Q ss_pred HHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-CCCCCccEEeeeCCCCCCCC-CC-CCCCCCCC
Q 013724 243 RNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-IHLEFLKELDLSGCSKLKRL-PD-ISSAANIE 319 (437)
Q Consensus 243 ~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~~l~~L~~L~Ls~n~~~~~l-p~-l~~l~~L~ 319 (437)
...+++++|.+|.............++|.|++|+|+.|.+...+... ..+.+|++|.|.+..+.... .. +..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 34566677776654433333334567888888888888743332222 25667888887775433221 11 44555556
Q ss_pred EEEeeCCCCc----------ccChh---------------------------------------------hcCCCCCCEE
Q 013724 320 EMFLNGTAIE----------ELPSS---------------------------------------------IECLYKLLHL 344 (437)
Q Consensus 320 ~L~Ls~n~l~----------~lp~~---------------------------------------------i~~L~~L~~L 344 (437)
.|+++.|++. .+... ...++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 6655555322 11100 1112333344
Q ss_pred eccCCCCCCCCc--cccCCCCCCCEEeeeCCCCCCccch------hccCCCCCceeecc
Q 013724 345 DLEDCKSLKSLP--SGLCKLKSLKYLTLNGCSILQRLNF------DIWSILPLVLTTFI 395 (437)
Q Consensus 345 ~L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~~l~~lP~------~l~~L~~L~~L~~~ 395 (437)
+|+.|+ +.++. +.+.+++.|..|.+.+++....+-. -++.|++++.|+-.
T Consensus 230 nL~~~~-idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 230 NLGANN-IDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhcccc-cccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 444444 44432 3467788888888888887665432 36788888888753
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.39 E-value=0.00036 Score=68.40 Aligned_cols=263 Identities=15% Similarity=0.134 Sum_probs=135.3
Q ss_pred eeccCCCcccCc---hHHHHHHHHhcCCceEEe-cCCCchH----HHHHHHHH-hcceEEEEecCccccccccHhhHHhh
Q 013724 121 PTAIPSEDTRDN---FTSHLYSALSQKSIETFI-NRGDEIS----QSLVDAIE-ASAISLIIFSEGYASSRWFFDKLVKI 191 (437)
Q Consensus 121 f~sf~g~d~r~~---f~~~l~~~L~~~g~~~~~-~~g~~i~----~~l~~~i~-~S~~~i~i~S~~~~sS~Wcl~EL~~i 191 (437)
|+||-|+-...+ -...+.+.+....-.+.+ --|..+. ..|-+.|. ....-+|-+|.-|+.+. -+|+...
T Consensus 3 ~~s~~gk~lkl~t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~--~~Ei~e~ 80 (382)
T KOG1909|consen 3 FFSIGGKSLKLETEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRL--KDEIPEA 80 (382)
T ss_pred eeccCCeeeeeehHhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCc--HHHHHHH
Confidence 456666544333 123455555555555555 2344444 34444443 23455666777776543 2344333
Q ss_pred hhhccccCeEEEeeeecCCCCCCCCCCCccCCchhhhhhhhhcChHHHHHHHHhhhhhhcccCcccCCCC----------
Q 013724 192 LQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTP---------- 261 (437)
Q Consensus 192 l~c~~~~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~~~~~~~e~l~~W~~aL~~L~Ls~~~~~~~~~---------- 261 (437)
+... ......-|....+|-|+- .||..+.. ..+.+.+-...|++|.|.+|..-....
T Consensus 81 L~~l-~~aL~~~~~L~~ldLSDN-----A~G~~g~~-------~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l 147 (382)
T KOG1909|consen 81 LKML-SKALLGCPKLQKLDLSDN-----AFGPKGIR-------GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFEL 147 (382)
T ss_pred HHHH-HHHHhcCCceeEeecccc-----ccCccchH-------HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHH
Confidence 3321 111122233444555541 22221111 011122224467777777775431100
Q ss_pred -CCccccccCceEEEeccCCCCCCCcCccC------CCCCccEEeeeCCCCCCC-C---C-CCCCCCCCCEEEeeCCCCc
Q 013724 262 -NPSFSQHLNTLVVLNLRDCKSLKSLPAGI------HLEFLKELDLSGCSKLKR-L---P-DISSAANIEEMFLNGTAIE 329 (437)
Q Consensus 262 -~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~------~l~~L~~L~Ls~n~~~~~-l---p-~l~~l~~L~~L~Ls~n~l~ 329 (437)
.......-+.|+++....|. +..-+... ..+.|+.+.+..|.+-.. . - .+..+++|+.|||.+|-++
T Consensus 148 ~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 148 AVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred HHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 00112233678888888877 55544332 456788888887654321 1 1 1667788888888888776
Q ss_pred -----ccChhhcCCCCCCEEeccCCCCCCC----Ccccc-CCCCCCCEEeeeCCCCCCc----cchhccCCCCCceeecc
Q 013724 330 -----ELPSSIECLYKLLHLDLEDCKSLKS----LPSGL-CKLKSLKYLTLNGCSILQR----LNFDIWSILPLVLTTFI 395 (437)
Q Consensus 330 -----~lp~~i~~L~~L~~L~L~~n~~l~~----LP~~l-~~L~~L~~L~Ls~c~~l~~----lP~~l~~L~~L~~L~~~ 395 (437)
.+...+..+++|+.|++++|..-.. +-..+ ...++|+.|.+.+|.+... +...+...+.|..|++.
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 2334556677788888888762211 11222 3367788888888765432 33455666777777765
Q ss_pred cccc
Q 013724 396 YVYK 399 (437)
Q Consensus 396 ~~~~ 399 (437)
.|..
T Consensus 307 gN~l 310 (382)
T KOG1909|consen 307 GNRL 310 (382)
T ss_pred cccc
Confidence 5443
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=3.2e-06 Score=80.87 Aligned_cols=135 Identities=19% Similarity=0.185 Sum_probs=74.8
Q ss_pred CccEEeeeCCCCCCC-CCC-CCCCCCCCEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCcc--ccCCCCCCCEE
Q 013724 294 FLKELDLSGCSKLKR-LPD-ISSAANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPS--GLCKLKSLKYL 368 (437)
Q Consensus 294 ~L~~L~Ls~n~~~~~-lp~-l~~l~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~--~l~~L~~L~~L 368 (437)
.|++|||+...+... +-. ++.+.+|+.|.|.++.+. .+-..|.+-.+|+.|+|+.|..+++... .+..|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355566655432221 111 445556666666666666 4555666666777777777665554322 24566777777
Q ss_pred eeeCCCCCCccc-hhccCC-CCCceeecccccchhhccccccCCCcccccccccCCCCCCcccccccccCC
Q 013724 369 TLNGCSILQRLN-FDIWSI-LPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQLLSFCIQLS 437 (437)
Q Consensus 369 ~Ls~c~~l~~lP-~~l~~L-~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~~d~s~c~~l~ 437 (437)
+|++|....+.- ..+... ++|..|++.+|...+... .+..+...+|.+.++|+|-|..|+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s---------h~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS---------HLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh---------HHHHHHHhCCceeeeccccccccC
Confidence 777776554332 112222 456666666665553332 345666666666666766666553
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.36 E-value=4e-05 Score=79.02 Aligned_cols=121 Identities=27% Similarity=0.361 Sum_probs=88.3
Q ss_pred cCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEec
Q 013724 269 LNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL 346 (437)
Q Consensus 269 l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L 346 (437)
+..+..+++..|. ++.+-..+ .+++|..|++.+|. +..+.. +..+++|++|+|++|.|+.+. .+..|+.|+.|++
T Consensus 71 l~~l~~l~l~~n~-i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNL-IAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhh-hhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 4556666677766 44433334 78999999999975 555555 888999999999999999884 4677888999999
Q ss_pred cCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchh-ccCCCCCceeecc
Q 013724 347 EDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFD-IWSILPLVLTTFI 395 (437)
Q Consensus 347 ~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~-l~~L~~L~~L~~~ 395 (437)
.+|. +..++ .+..++.|+.+++++|.... +... +..+.+|+.+.+.
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLG 194 (414)
T ss_pred ccCc-chhcc-CCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhcc
Confidence 9998 77664 36668999999999976443 3321 3555566555543
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.34 E-value=8.8e-05 Score=69.99 Aligned_cols=62 Identities=27% Similarity=0.343 Sum_probs=26.6
Q ss_pred CCCCCCCCEEEeeCC--CCc-ccChhhcCCCCCCEEeccCCCCCCCCc--cccCCCCCCCEEeeeCCC
Q 013724 312 ISSAANIEEMFLNGT--AIE-ELPSSIECLYKLLHLDLEDCKSLKSLP--SGLCKLKSLKYLTLNGCS 374 (437)
Q Consensus 312 l~~l~~L~~L~Ls~n--~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~ 374 (437)
+..|++|++|.++.| ++. .++....++++|++|++++|+ +..+- ..+..+.+|..|++.+|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCC
Confidence 334445555555544 333 333333444555555555554 22110 113344445555555554
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00019 Score=67.73 Aligned_cols=105 Identities=29% Similarity=0.321 Sum_probs=71.4
Q ss_pred ccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCC--CCCCCCCC-CCCCCCCCEEEeeCCCCccc--ChhhcCCCC
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGC--SKLKRLPD-ISSAANIEEMFLNGTAIEEL--PSSIECLYK 340 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n--~~~~~lp~-l~~l~~L~~L~Ls~n~l~~l--p~~i~~L~~ 340 (437)
...+..|+.|.+.++. ++.+-..-.|++|+.|.++.| .....++- .-.+++|++|+|++|+|+-+ -..+..+.+
T Consensus 39 ~d~~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3346677888888776 444433337889999999988 44555554 45569999999999988742 224667888
Q ss_pred CCEEeccCCCCCCCCcc----ccCCCCCCCEEeeeC
Q 013724 341 LLHLDLEDCKSLKSLPS----GLCKLKSLKYLTLNG 372 (437)
Q Consensus 341 L~~L~L~~n~~l~~LP~----~l~~L~~L~~L~Ls~ 372 (437)
|..|++.+|.-.. +-. .+.-+++|++|+-..
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhccccccc
Confidence 8999999988333 432 245567777776544
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.20 E-value=0.00014 Score=71.20 Aligned_cols=179 Identities=18% Similarity=0.083 Sum_probs=118.9
Q ss_pred hhhhhhcccCcccCCC--CCCccccccCceEEEeccCCCCCCCcCc--------------cC-CCCCccEEeeeCCCCCC
Q 013724 245 ALKEKIISACNIFTKT--PNPSFSQHLNTLVVLNLRDCKSLKSLPA--------------GI-HLEFLKELDLSGCSKLK 307 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~~l~~lp~--------------~~-~l~~L~~L~Ls~n~~~~ 307 (437)
.|+.++||.|-+-... ....++.++..|++|.|.+|. ++.... .+ .-+.|+++....|. +.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-le 170 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LE 170 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cc
Confidence 4666788877543221 122345567888999999887 543221 11 34678888888864 44
Q ss_pred CCCC------CCCCCCCCEEEeeCCCCc-----ccChhhcCCCCCCEEeccCCCCCC----CCccccCCCCCCCEEeeeC
Q 013724 308 RLPD------ISSAANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCKSLK----SLPSGLCKLKSLKYLTLNG 372 (437)
Q Consensus 308 ~lp~------l~~l~~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~n~~l~----~LP~~l~~L~~L~~L~Ls~ 372 (437)
..+. +...+.|+.+.+..|.|. -+...+.++++|++|||.+|.+.. .+-..+..+++|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 3331 556788999999988876 234568899999999999998432 2344567788999999999
Q ss_pred CCCCCccc----hhc-cCCCCCceeecccccchhhccc--cccCCCcccccccccCCCCC
Q 013724 373 CSILQRLN----FDI-WSILPLVLTTFIYVYKFFVETS--AASGDDWKSAFDAAADGPVK 425 (437)
Q Consensus 373 c~~l~~lP----~~l-~~L~~L~~L~~~~~~~~~~~~~--~~~~~~~~~l~~~~~s~~~~ 425 (437)
|..-..-. +.+ ...++|++|.+.+|........ .......+.+..+..+++.+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 98654422 233 2357899999877766644433 33444466777788888777
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.14 E-value=0.0002 Score=78.09 Aligned_cols=151 Identities=21% Similarity=0.197 Sum_probs=97.4
Q ss_pred HHHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCC-cCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCC
Q 013724 242 WRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS-LPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIE 319 (437)
Q Consensus 242 W~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~-lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~ 319 (437)
-+..|+.|++++.......-.......||.|+.|.+.+-.+... +-... .+++|..||+++++ +..+-.+++|+||+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq 198 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQ 198 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHH
Confidence 34578888888754332111112234689999999988553222 11222 89999999999975 55555589999999
Q ss_pred EEEeeCCCCcccC--hhhcCCCCCCEEeccCCCCCCCC--c----cccCCCCCCCEEeeeCCCCCCccchh-ccCCCCCc
Q 013724 320 EMFLNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSL--P----SGLCKLKSLKYLTLNGCSILQRLNFD-IWSILPLV 390 (437)
Q Consensus 320 ~L~Ls~n~l~~lp--~~i~~L~~L~~L~L~~n~~l~~L--P----~~l~~L~~L~~L~Ls~c~~l~~lP~~-l~~L~~L~ 390 (437)
.|.+.+=.+..-. ..+.+|++|++||++.-.....- . +.-..|++|+.||.++....+.+-+. +..-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 9999886666322 36788999999999986643321 1 11235889999999986554444333 22334444
Q ss_pred eee
Q 013724 391 LTT 393 (437)
Q Consensus 391 ~L~ 393 (437)
.+.
T Consensus 279 ~i~ 281 (699)
T KOG3665|consen 279 QIA 281 (699)
T ss_pred hhh
Confidence 443
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.00017 Score=69.29 Aligned_cols=128 Identities=21% Similarity=0.229 Sum_probs=85.3
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC----CCCCccEEeeeCCCCCCCCCCC-CCCCCCC
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI----HLEFLKELDLSGCSKLKRLPDI-SSAANIE 319 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~----~l~~L~~L~Ls~n~~~~~lp~l-~~l~~L~ 319 (437)
++.-+.+.+|..-.......+-..++.++.|+|.+|. +..+.... +|+.|+.|+|+.|.+...+..+ ..+.+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 4455666666544332222334467889999999998 55544332 8999999999999876555443 3567999
Q ss_pred EEEeeCCCCc--ccChhhcCCCCCCEEeccCCCCCCCC---ccccCCC-CCCCEEeeeCCC
Q 013724 320 EMFLNGTAIE--ELPSSIECLYKLLHLDLEDCKSLKSL---PSGLCKL-KSLKYLTLNGCS 374 (437)
Q Consensus 320 ~L~Ls~n~l~--~lp~~i~~L~~L~~L~L~~n~~l~~L---P~~l~~L-~~L~~L~Ls~c~ 374 (437)
.|-|.++.+. .+-..+..++.++.|.++.|. +..+ ...+... +.+.+|++.+|.
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~ 184 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCL 184 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcH
Confidence 9999998887 566677889999999998884 2221 1122222 256666666664
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.96 E-value=6.6e-05 Score=79.55 Aligned_cols=107 Identities=21% Similarity=0.147 Sum_probs=84.5
Q ss_pred HHHHHHHHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCCCCC
Q 013724 237 EKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISS 314 (437)
Q Consensus 237 e~l~~W~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~l~~ 314 (437)
+.-.....+++.|+|+.|..... .++..|++|++|||++|. +..+|..- .++ |+.|+|++| -+..+-.+.+
T Consensus 180 D~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~gie~ 252 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNN-ALTTLRGIEN 252 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccch-hccccccchhhhh-heeeeeccc-HHHhhhhHHh
Confidence 33445566888899998765432 257789999999999998 88888765 555 999999986 4666777889
Q ss_pred CCCCCEEEeeCCCCcccC--hhhcCCCCCCEEeccCCC
Q 013724 315 AANIEEMFLNGTAIEELP--SSIECLYKLLHLDLEDCK 350 (437)
Q Consensus 315 l~~L~~L~Ls~n~l~~lp--~~i~~L~~L~~L~L~~n~ 350 (437)
|.+|+.|||++|-|.... .-++.|..|+.|.|.+|.
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 999999999999887432 246678899999999997
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=4.7e-05 Score=72.45 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=40.5
Q ss_pred ceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccCh--hhcCCCCCCEEeccC
Q 013724 271 TLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPS--SIECLYKLLHLDLED 348 (437)
Q Consensus 271 ~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~--~i~~L~~L~~L~L~~ 348 (437)
+.+.|+..+|. +..+.-...++.|++|.|+-|+ +..+..+..+++|+.|+|..|.|..+.+ -+.+|++|+.|.|..
T Consensus 20 ~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCC-ccHHHHHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 33444444444 3333322255555555555543 3333335555555555555555554432 234556666666666
Q ss_pred CCCCCC
Q 013724 349 CKSLKS 354 (437)
Q Consensus 349 n~~l~~ 354 (437)
|...+.
T Consensus 98 NPCc~~ 103 (388)
T KOG2123|consen 98 NPCCGE 103 (388)
T ss_pred CCcccc
Confidence 554443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=9.4e-05 Score=70.43 Aligned_cols=101 Identities=23% Similarity=0.199 Sum_probs=78.8
Q ss_pred CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCcc--ccCCCCCCCEE
Q 013724 291 HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS--GLCKLKSLKYL 368 (437)
Q Consensus 291 ~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~--~l~~L~~L~~L 368 (437)
.+.+.+.|++-+|. +..+.-..+|+.|+.|.|+-|+|+.+- .+..|++|+.|+|..|. +.+|.+ .+.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 46678889999985 444444667999999999999999884 58899999999999988 676653 36899999999
Q ss_pred eeeCCCCCCccch-----hccCCCCCceeec
Q 013724 369 TLNGCSILQRLNF-----DIWSILPLVLTTF 394 (437)
Q Consensus 369 ~Ls~c~~l~~lP~-----~l~~L~~L~~L~~ 394 (437)
-|..|+=.+.-+. -+.-|++|+.|+-
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 9999886665443 2455666766663
No 69
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=96.67 E-value=0.0044 Score=53.22 Aligned_cols=75 Identities=15% Similarity=0.275 Sum_probs=42.4
Q ss_pred CceeeccCCCcccCchHHHHHHHHhcC-------CceE--E--------ec-----CCCchHHHHHHHHHhcceEEEEec
Q 013724 118 EGVPTAIPSEDTRDNFTSHLYSALSQK-------SIET--F--------IN-----RGDEISQSLVDAIEASAISLIIFS 175 (437)
Q Consensus 118 ~dvf~sf~g~d~r~~f~~~l~~~L~~~-------g~~~--~--------~~-----~g~~i~~~l~~~i~~S~~~i~i~S 175 (437)
|.|||||...|-. ..++.|.+.+... .+.. + .. ..+.|...|.++|..|...||+++
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5899999998883 4666677677662 2321 1 11 123788999999999999999999
Q ss_pred CccccccccHhhHHhhhh
Q 013724 176 EGYASSRWFFDKLVKILQ 193 (437)
Q Consensus 176 ~~~~sS~Wcl~EL~~il~ 193 (437)
++-..|.|.-.|+...++
T Consensus 80 ~~T~~s~wV~~EI~~A~~ 97 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK 97 (130)
T ss_dssp TT----HHHHHHHHHHTT
T ss_pred CCcccCcHHHHHHHHHHH
Confidence 999999999999998777
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.55 E-value=9.3e-05 Score=73.97 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=14.2
Q ss_pred ccccccCCCCCCcccccccccCC
Q 013724 415 AFDAAADGPVKPSQLLSFCIQLS 437 (437)
Q Consensus 415 l~~~~~s~~~~~~~d~s~c~~l~ 437 (437)
+..++..++.++...+|.|..+|
T Consensus 364 L~sls~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELIT 386 (483)
T ss_pred HhhhccCCchhccCChhhhhhhh
Confidence 45566666666666666665543
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.16 E-value=0.00068 Score=70.30 Aligned_cols=125 Identities=28% Similarity=0.373 Sum_probs=68.6
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCC-CCCCCcCc---cC--CCCCccEEeeeCCCCCCCCC--CC-CCC
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDC-KSLKSLPA---GI--HLEFLKELDLSGCSKLKRLP--DI-SSA 315 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~~l~~lp~---~~--~l~~L~~L~Ls~n~~~~~lp--~l-~~l 315 (437)
.|+.+.+..|..............+++|+.|++++| ......+. .+ .+.+|+.|++++|..+...- .+ ..+
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 456666666665554332234456777888888763 22222221 11 56777888888776443222 12 236
Q ss_pred CCCCEEEeeCCC-Cc--ccChhhcCCCCCCEEeccCCCCCCC--CccccCCCCCCCEEe
Q 013724 316 ANIEEMFLNGTA-IE--ELPSSIECLYKLLHLDLEDCKSLKS--LPSGLCKLKSLKYLT 369 (437)
Q Consensus 316 ~~L~~L~Ls~n~-l~--~lp~~i~~L~~L~~L~L~~n~~l~~--LP~~l~~L~~L~~L~ 369 (437)
++|+.|.+.++. ++ .+-.....+++|+.|+|+.|..++. +.....++++|+.|.
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 677777766554 44 3334445677788888877775532 222233445444443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.66 E-value=0.0053 Score=35.54 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=11.6
Q ss_pred CCCEEEeeCCCCcccChhhcC
Q 013724 317 NIEEMFLNGTAIEELPSSIEC 337 (437)
Q Consensus 317 ~L~~L~Ls~n~l~~lp~~i~~ 337 (437)
+|++|+|++|.|+.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355566666655555555443
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.54 E-value=0.047 Score=52.35 Aligned_cols=111 Identities=23% Similarity=0.232 Sum_probs=60.8
Q ss_pred cccccCceEEEeccCCCCCCCcCcc--------------C-CCCCccEEeeeCCCCCCCCCC------CCCCCCCCEEEe
Q 013724 265 FSQHLNTLVVLNLRDCKSLKSLPAG--------------I-HLEFLKELDLSGCSKLKRLPD------ISSAANIEEMFL 323 (437)
Q Consensus 265 ~~~~l~~L~~L~Ls~n~~l~~lp~~--------------~-~l~~L~~L~Ls~n~~~~~lp~------l~~l~~L~~L~L 323 (437)
++.+-+.|.+|.|++|. ++.+... . .-+.|++.....|.+. ..|. +..-.+|+.+.+
T Consensus 115 ~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki 192 (388)
T COG5238 115 LISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKI 192 (388)
T ss_pred HHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEe
Confidence 34455667777777766 5543211 0 3355666666665432 2221 222346777777
Q ss_pred eCCCCc-c-----cChhhcCCCCCCEEeccCCCCCC----CCccccCCCCCCCEEeeeCCCCCC
Q 013724 324 NGTAIE-E-----LPSSIECLYKLLHLDLEDCKSLK----SLPSGLCKLKSLKYLTLNGCSILQ 377 (437)
Q Consensus 324 s~n~l~-~-----lp~~i~~L~~L~~L~L~~n~~l~----~LP~~l~~L~~L~~L~Ls~c~~l~ 377 (437)
..|.|. + +...+..+.+|+.|+|.+|.+.- .|...++..+.|+.|.+..|-...
T Consensus 193 ~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 193 QQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred eecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 777765 1 11234566778888887776321 122345556667777777775443
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.49 E-value=0.01 Score=61.43 Aligned_cols=127 Identities=27% Similarity=0.331 Sum_probs=84.5
Q ss_pred ccCceEEEeccCCCCCCCcC--ccC-CCCCccEEeeeCC-CCCCCCC----C-CCCCCCCCEEEeeCCC-Cccc-Chhh-
Q 013724 268 HLNTLVVLNLRDCKSLKSLP--AGI-HLEFLKELDLSGC-SKLKRLP----D-ISSAANIEEMFLNGTA-IEEL-PSSI- 335 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp--~~~-~l~~L~~L~Ls~n-~~~~~lp----~-l~~l~~L~~L~Ls~n~-l~~l-p~~i- 335 (437)
.++.|+.|.+.+|..+.... ... .++.|+.|++++| ......+ . ...+.+|+.|+++.+. ++.. -..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46889999999987666532 222 8899999999983 3333333 1 4457899999999876 6522 1223
Q ss_pred cCCCCCCEEeccCCCCCCC--CccccCCCCCCCEEeeeCCCCCCc--cchhccCCCCCceeec
Q 013724 336 ECLYKLLHLDLEDCKSLKS--LPSGLCKLKSLKYLTLNGCSILQR--LNFDIWSILPLVLTTF 394 (437)
Q Consensus 336 ~~L~~L~~L~L~~n~~l~~--LP~~l~~L~~L~~L~Ls~c~~l~~--lP~~l~~L~~L~~L~~ 394 (437)
..+++|+.|.+.+|..++. +-.....+++|++|+|++|..+.. +.....+..+|+.|.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 3488999999888885433 223346788999999999987643 3333334444444443
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.22 E-value=0.18 Score=42.24 Aligned_cols=99 Identities=13% Similarity=0.268 Sum_probs=48.2
Q ss_pred ccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCC
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYK 340 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~ 340 (437)
+..+.+|+.+.+.. . +..++... .+++|+.+.+..+ +..++. +.++.+|+.+.+.+ .+..++. .+..+++
T Consensus 8 F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 34456777777764 2 45566554 6667888877763 444554 66776778877755 5555543 3455777
Q ss_pred CCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeC
Q 013724 341 LLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNG 372 (437)
Q Consensus 341 L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~ 372 (437)
|+.+.+..+ +..++. .+.++ +|+.+.+..
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 777777543 444443 34555 677666643
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.74 E-value=0.027 Score=32.51 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=8.3
Q ss_pred CCEEeccCCCCCCCCcccc
Q 013724 341 LLHLDLEDCKSLKSLPSGL 359 (437)
Q Consensus 341 L~~L~L~~n~~l~~LP~~l 359 (437)
|++|+|++|. ++.+|..+
T Consensus 2 L~~Ldls~n~-l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSF 19 (22)
T ss_dssp ESEEEETSSE-ESEEGTTT
T ss_pred ccEEECCCCc-CEeCChhh
Confidence 4455555553 33444443
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.19 E-value=0.061 Score=29.03 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=5.2
Q ss_pred CCCEEEeeCCCCccc
Q 013724 317 NIEEMFLNGTAIEEL 331 (437)
Q Consensus 317 ~L~~L~Ls~n~l~~l 331 (437)
+|+.|+|++|+|+++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.04 E-value=0.24 Score=47.58 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=89.6
Q ss_pred ccCceEEEeccCCCCCCCcCccC-----CCCCccEEeeeCCCCCCCCCC---------------CCCCCCCCEEEeeCCC
Q 013724 268 HLNTLVVLNLRDCKSLKSLPAGI-----HLEFLKELDLSGCSKLKRLPD---------------ISSAANIEEMFLNGTA 327 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~~~-----~l~~L~~L~Ls~n~~~~~lp~---------------l~~l~~L~~L~Ls~n~ 327 (437)
.||+|+..+|+.|.+-...|..+ .-+.|++|.|++|. ++.+.. ...-|.|+..+...|+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 47899999999998666666554 66889999999874 443321 3346889999999999
Q ss_pred CcccChh-----hcCCCCCCEEeccCCCCCCCCcc--------ccCCCCCCCEEeeeCCCCCCc----cchhccCCCCCc
Q 013724 328 IEELPSS-----IECLYKLLHLDLEDCKSLKSLPS--------GLCKLKSLKYLTLNGCSILQR----LNFDIWSILPLV 390 (437)
Q Consensus 328 l~~lp~~-----i~~L~~L~~L~L~~n~~l~~LP~--------~l~~L~~L~~L~Ls~c~~l~~----lP~~l~~L~~L~ 390 (437)
+...|.. +..-.+|+.+.+..|. + =|. ++..+.+|+.|||+.|-.... +...+..-..|+
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNg-I--rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNG-I--RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecC-c--CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 9866542 2223588888888876 2 233 356788999999999875432 344455556678
Q ss_pred eeeccccc
Q 013724 391 LTTFIYVY 398 (437)
Q Consensus 391 ~L~~~~~~ 398 (437)
.|.+-+|-
T Consensus 246 EL~lnDCl 253 (388)
T COG5238 246 ELRLNDCL 253 (388)
T ss_pred hccccchh
Confidence 88776663
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.02 E-value=0.56 Score=39.19 Aligned_cols=96 Identities=10% Similarity=0.232 Sum_probs=54.4
Q ss_pred CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCC
Q 013724 291 HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLK 366 (437)
Q Consensus 291 ~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~ 366 (437)
.+.+|+.+.+.. .+..++. |.++.+|+.+.+..+ +..++. .+.++.+|+.+.+.+ . +..++. .+..+++|+
T Consensus 10 ~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-cccccccccccccccc
Confidence 667888888875 2445554 788889999999875 777764 567787899999965 2 455554 456789999
Q ss_pred EEeeeCCCCCCccchh-ccCCCCCceeec
Q 013724 367 YLTLNGCSILQRLNFD-IWSILPLVLTTF 394 (437)
Q Consensus 367 ~L~Ls~c~~l~~lP~~-l~~L~~L~~L~~ 394 (437)
.+++..+ +..++.. +.+. +|+.+.+
T Consensus 85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 85 NIDIPSN--ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp EEEETTT---BEEHTTTTTT--T--EEE-
T ss_pred ccccCcc--ccEEchhhhcCC-CceEEEE
Confidence 9998653 5556543 4554 7777765
No 80
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=90.70 E-value=0.66 Score=39.51 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=49.0
Q ss_pred eeeccCCCcccCchHHHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCcc
Q 013724 120 VPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGY 178 (437)
Q Consensus 120 vf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~ 178 (437)
|||-|. +|. .....+...|+..|+.+.+ ..|..|.+.|.++++.+..+|++++++-
T Consensus 2 VFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD 62 (125)
T PF10137_consen 2 VFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDD 62 (125)
T ss_pred EEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccc
Confidence 899985 776 6778899999988999877 5799999999999999999999999874
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.56 E-value=0.17 Score=27.25 Aligned_cols=16 Identities=50% Similarity=0.754 Sum_probs=6.3
Q ss_pred CCCEEeccCCCCCCCCc
Q 013724 340 KLLHLDLEDCKSLKSLP 356 (437)
Q Consensus 340 ~L~~L~L~~n~~l~~LP 356 (437)
+|+.|+|++|+ ++++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555555 44443
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.49 E-value=0.057 Score=49.56 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=50.0
Q ss_pred CCEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCc-ccc-CCCCCCCEEeeeCCCCCCccc-hhccCCCCCceee
Q 013724 318 IEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLP-SGL-CKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTT 393 (437)
Q Consensus 318 L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP-~~l-~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~ 393 (437)
++.++-++..|. +--..+.+++.++.|.+.+|..+...- +.+ +-.++|+.|+|++|+.+++-- ..+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455555555555 223456677778888888887665432 112 235678888888888766543 4567777777776
Q ss_pred cccc
Q 013724 394 FIYV 397 (437)
Q Consensus 394 ~~~~ 397 (437)
+.+.
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 6543
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.16 E-value=0.24 Score=29.55 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=12.3
Q ss_pred CCCCCEEEeeCCCCcccChh
Q 013724 315 AANIEEMFLNGTAIEELPSS 334 (437)
Q Consensus 315 l~~L~~L~Ls~n~l~~lp~~ 334 (437)
|++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666654
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.16 E-value=0.24 Score=29.55 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=12.3
Q ss_pred CCCCCEEEeeCCCCcccChh
Q 013724 315 AANIEEMFLNGTAIEELPSS 334 (437)
Q Consensus 315 l~~L~~L~Ls~n~l~~lp~~ 334 (437)
|++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666654
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.84 E-value=0.0082 Score=56.14 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=50.1
Q ss_pred CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEee
Q 013724 291 HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTL 370 (437)
Q Consensus 291 ~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~L 370 (437)
.+...+.||++.|.....--.++.++.|..|+++.|.+..+|..++.+..+..+++.+|. ...+|.+.+.++.++++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhh
Confidence 344555555555443332223555566666666666666666666666666666666555 6666666666666666666
Q ss_pred eCCCC
Q 013724 371 NGCSI 375 (437)
Q Consensus 371 s~c~~ 375 (437)
-+++.
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 66553
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.48 E-value=0.88 Score=27.03 Aligned_cols=20 Identities=50% Similarity=0.727 Sum_probs=12.0
Q ss_pred CCCCCEEeccCCCCCCCCccc
Q 013724 338 LYKLLHLDLEDCKSLKSLPSG 358 (437)
Q Consensus 338 L~~L~~L~L~~n~~l~~LP~~ 358 (437)
|++|+.|+|++|. +..+|..
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHH
Confidence 3556666666665 6666554
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.48 E-value=0.88 Score=27.03 Aligned_cols=20 Identities=50% Similarity=0.727 Sum_probs=12.0
Q ss_pred CCCCCEEeccCCCCCCCCccc
Q 013724 338 LYKLLHLDLEDCKSLKSLPSG 358 (437)
Q Consensus 338 L~~L~~L~L~~n~~l~~LP~~ 358 (437)
|++|+.|+|++|. +..+|..
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHH
Confidence 3556666666665 6666554
No 88
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=83.14 E-value=2.5 Score=36.78 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=46.3
Q ss_pred ceeeccCCCcccC-chHHHHHHHHhcC-CceEEe---c----CCCchHHHHHHHHHhcceEEEEecCcc
Q 013724 119 GVPTAIPSEDTRD-NFTSHLYSALSQK-SIETFI---N----RGDEISQSLVDAIEASAISLIIFSEGY 178 (437)
Q Consensus 119 dvf~sf~g~d~r~-~f~~~l~~~L~~~-g~~~~~---~----~g~~i~~~l~~~i~~S~~~i~i~S~~~ 178 (437)
-|||+|.....-+ .-|-.|.+.|++. |+.+.+ + .+.....=+.++|+++-..|+|.|+.+
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 3899998744422 4477899999998 999988 2 244555667888999999999999765
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.92 E-value=0.025 Score=53.01 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=71.1
Q ss_pred cccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEE
Q 013724 267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHL 344 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 344 (437)
..+...+.||++.|. +..+...+ .++.|..|+++.|. +..+|. +..+..+..+++..|.++..|.+++.++.++++
T Consensus 39 ~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 346788999999998 65666666 77888999999865 555665 888888999999999999999999999999999
Q ss_pred eccCCCCCCCC
Q 013724 345 DLEDCKSLKSL 355 (437)
Q Consensus 345 ~L~~n~~l~~L 355 (437)
++.++.+...+
T Consensus 117 e~k~~~~~~~~ 127 (326)
T KOG0473|consen 117 EQKKTEFFRKL 127 (326)
T ss_pred hhccCcchHHH
Confidence 99998854444
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.68 E-value=0.3 Score=44.96 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=49.1
Q ss_pred ceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCC--CCC-CCCCCCEEEeeC-CCCcc-cChhhcCCCCCCEE
Q 013724 271 TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP--DIS-SAANIEEMFLNG-TAIEE-LPSSIECLYKLLHL 344 (437)
Q Consensus 271 ~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp--~l~-~l~~L~~L~Ls~-n~l~~-lp~~i~~L~~L~~L 344 (437)
.++.++-+++.+...=-..+ .++.|+.|.+.+|......- -++ -.++|+.|+|++ .+|++ --..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46677777765221111122 67777888888886655322 133 357888888885 46773 23467778888888
Q ss_pred eccCCC
Q 013724 345 DLEDCK 350 (437)
Q Consensus 345 ~L~~n~ 350 (437)
.|.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 877633
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.67 E-value=1.9 Score=26.01 Aligned_cols=17 Identities=18% Similarity=0.517 Sum_probs=9.4
Q ss_pred CCCEEEeeCCCCcccCh
Q 013724 317 NIEEMFLNGTAIEELPS 333 (437)
Q Consensus 317 ~L~~L~Ls~n~l~~lp~ 333 (437)
+|+.|++++|+|+++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555554
No 92
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=72.04 E-value=7.4 Score=36.97 Aligned_cols=97 Identities=10% Similarity=0.025 Sum_probs=65.3
Q ss_pred CCCCCCCceeeccCCCcccCchHHHHHHHHhc--CCceEEe--------cCCCchHHHHHHHHH--hcceEEEEecCccc
Q 013724 112 AHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQ--KSIETFI--------NRGDEISQSLVDAIE--ASAISLIIFSEGYA 179 (437)
Q Consensus 112 ~~~~~~~dvf~sf~g~d~r~~f~~~l~~~L~~--~g~~~~~--------~~g~~i~~~l~~~i~--~S~~~i~i~S~~~~ 179 (437)
....+.|||=+||.||-. +.+..+-..++. ..+.+|+ -+|+. ..++..|. .+++.+|-+-++|.
T Consensus 172 d~~~~~~DiG~SFaGEAR--~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~sL--~~~L~~~Y~~rC~~~~VF~~~~Y~ 247 (329)
T COG4916 172 DSSEKPVDSGISFAGEAR--NLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGSL--VSTLDPGYDIRCVVTTVFNTGSYI 247 (329)
T ss_pred cccccccceeeEeehhhh--hHHHHHHHhhhcccCCceeeeechhhccccCccH--HHhcccccCceEEEEEEEeCCceE
Confidence 344668999999999987 788888888884 4555566 23332 24555554 56777888899999
Q ss_pred cccccHhhHHhhhhhccccCeEEEeeee-cCCCCCC
Q 013724 180 SSRWFFDKLVKILQCKRVYGQIVLPVFY-GVDPAPV 214 (437)
Q Consensus 180 sS~Wcl~EL~~il~c~~~~~~~vlPiFy-~VdpS~V 214 (437)
...||.-|-..+-+.. .-....||.| .+|.+.+
T Consensus 248 ~K~~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~a~ 281 (329)
T COG4916 248 CKSTCHIEGLEGRLNP--ILDTGFRIKYLYADNIAI 281 (329)
T ss_pred Eeeeeccchhhccccc--cccccceEEEEecCCccc
Confidence 9999998887665542 1223344433 5555443
No 93
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=69.57 E-value=13 Score=28.86 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=46.3
Q ss_pred eeeccCCCcccCchHHHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccc
Q 013724 120 VPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASS 181 (437)
Q Consensus 120 vf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS 181 (437)
||||=...|- ..--+.|.+++.+.|..+.. -.+....+.++++|++|.++|.++-.+|.+.
T Consensus 2 VFiSSt~~Dl-~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~ 67 (83)
T PF13271_consen 2 VFISSTFRDL-KEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV 67 (83)
T ss_pred EEEecChhhH-HHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence 7887666664 23336788888877776644 3477777899999999999999999999543
No 94
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.75 E-value=3.7 Score=24.75 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=8.8
Q ss_pred CCCCEEEeeCCCCcc
Q 013724 316 ANIEEMFLNGTAIEE 330 (437)
Q Consensus 316 ~~L~~L~Ls~n~l~~ 330 (437)
.+|+.|+|+.|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666666653
No 95
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=58.87 E-value=7.1 Score=26.83 Aligned_cols=15 Identities=47% Similarity=0.565 Sum_probs=13.6
Q ss_pred CChHHHHHHhhHhhh
Q 013724 19 ADPEEELRWMSQEVR 33 (437)
Q Consensus 19 ~~~~~~~~~~~~~~~ 33 (437)
.||||+-|=|-|||=
T Consensus 11 ~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 11 MDPEEMKRKMREDVI 25 (51)
T ss_pred CCHHHHHHHHHHHHH
Confidence 799999999999983
No 96
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=58.57 E-value=5.2 Score=23.11 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=6.4
Q ss_pred CCCCEEEeeCCCCc
Q 013724 316 ANIEEMFLNGTAIE 329 (437)
Q Consensus 316 ~~L~~L~Ls~n~l~ 329 (437)
++|+.|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45555555555554
No 97
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=57.79 E-value=7.8 Score=22.94 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=10.5
Q ss_pred CCCCCEEeeeCCCCCC
Q 013724 362 LKSLKYLTLNGCSILQ 377 (437)
Q Consensus 362 L~~L~~L~Ls~c~~l~ 377 (437)
+++|++|+|++|..+.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3567777777776554
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.63 E-value=9.9 Score=40.19 Aligned_cols=62 Identities=19% Similarity=0.124 Sum_probs=32.8
Q ss_pred CCCCccEEeeeCCCCCCCCC---C-CCCCCCCCEEEeeCC--CCcccChhhcC--CCCCCEEeccCCCCCCC
Q 013724 291 HLEFLKELDLSGCSKLKRLP---D-ISSAANIEEMFLNGT--AIEELPSSIEC--LYKLLHLDLEDCKSLKS 354 (437)
Q Consensus 291 ~l~~L~~L~Ls~n~~~~~lp---~-l~~l~~L~~L~Ls~n--~l~~lp~~i~~--L~~L~~L~L~~n~~l~~ 354 (437)
+.+.+..|+|++|.+ ..+. . -...|+|+.|+|++| .+... .++.+ ...|+.|-+.+|+..+.
T Consensus 216 n~p~i~sl~lsnNrL-~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRL-YHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchh-hchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccc
Confidence 566777777777653 2222 2 223567777777776 33321 12222 23456666666664443
No 99
>PF08945 Bclx_interact: Bcl-x interacting, BH3 domain; InterPro: IPR015040 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Members of this entry induce apoptosis. The isoform BimL is more potent than the isoform BimEL. They form heterodimers with a number of antiapoptotic Bcl-2 proteins including Mcl-1, Bcl-2, Bcl-X(L), BFL-1, and BHRF1, but do not heterodimerise with proapoptotic proteins such as BAD, BOK, BAX or BAK. They are peripheral membrane proteins, associated with intracytoplasmic membranes. The BH3 motif is required for Bcl-2 binding and cytotoxicity. After antigen-driven expansion, the majority of T cells involved in an immune response die rapidly by apoptosis dependent on the Bcl-2 related proteins; Bim and Bax or Bak []. Bcl-xL regulates Bax and Bim is an important regulator of bcl-x deficiency induced cell death during hematopoiesis and testicular development in mice []. Bim(L) displaces Bcl-x(L) in the mitochondria and promotes Bax translocation during TNFalpha-induced apoptosis []. A potent inhibitor of antiapoptotic Bcl-2 family members, including Bcl-X(L), is AT-101 []. The immunophilin protein FKBP8 and its splice variant are Bcl-XL-interacting proteins and regulate the apoptotic signalling pathways in the RPE []. This protein is a long alpha helix, required for interaction with Bcl-x. It is found in BAM, Bim and Bcl2-like protein 11 []. ; PDB: 2NL9_B 2V6Q_B 3KJ0_B 3KJ1_B 3FDL_B 3D7V_B 3IO8_D 2K7W_B 2VM6_B 3IO9_B ....
Probab=46.49 E-value=9.8 Score=24.99 Aligned_cols=8 Identities=50% Similarity=1.290 Sum_probs=7.2
Q ss_pred HhhHhhhc
Q 013724 27 WMSQEVRE 34 (437)
Q Consensus 27 ~~~~~~~~ 34 (437)
|+|||.|-
T Consensus 19 wiAqELRR 26 (40)
T PF08945_consen 19 WIAQELRR 26 (40)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999995
No 100
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]
Probab=44.97 E-value=47 Score=30.50 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=43.4
Q ss_pred CCCCceeeccCCCcccCchHHHHHHHHhcC-CceE-Ee----cCCCchHHHHHHHHHhcceEEEEecCcc
Q 013724 115 DSYEGVPTAIPSEDTRDNFTSHLYSALSQK-SIET-FI----NRGDEISQSLVDAIEASAISLIIFSEGY 178 (437)
Q Consensus 115 ~~~~dvf~sf~g~d~r~~f~~~l~~~L~~~-g~~~-~~----~~g~~i~~~l~~~i~~S~~~i~i~S~~~ 178 (437)
..+ -|||-+ |.|. ......++|.+. -..+ |. ..|..|-+.|.+.|+++.++|++..|+-
T Consensus 81 ~~k-kvFvv~-ghd~---iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDD 145 (233)
T COG4271 81 NLK-KVFVVS-GHDA---IARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDD 145 (233)
T ss_pred Cce-eEEEEe-ccHH---HHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcc
Confidence 335 899988 5665 455555565532 2222 22 6899999999999999999999999984
No 101
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=39.04 E-value=22 Score=21.52 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=7.6
Q ss_pred CCCEEEeeCCCCc
Q 013724 317 NIEEMFLNGTAIE 329 (437)
Q Consensus 317 ~L~~L~Ls~n~l~ 329 (437)
+|++|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4566666666554
No 102
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.57 E-value=20 Score=37.99 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=35.9
Q ss_pred ccCceEEEeccCCCCCCCcCccC----CCCCccEEeeeCCCC-CCCCCCCCC--CCCCCEEEeeCCCCc
Q 013724 268 HLNTLVVLNLRDCKSLKSLPAGI----HLEFLKELDLSGCSK-LKRLPDISS--AANIEEMFLNGTAIE 329 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~~~----~l~~L~~L~Ls~n~~-~~~lp~l~~--l~~L~~L~Ls~n~l~ 329 (437)
+.+.+..++|++|+ +-.+...- ..++|+.|+|++|.. +...+++.+ ...|++|.|.||.+.
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 34667777777777 44433221 567888888888721 222233322 234778888888765
No 103
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=31.39 E-value=1e+02 Score=30.60 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=42.0
Q ss_pred CCceeeccCCCcccCchHHHHHHHHhcCCceEEe-cCCCchHHHHHHHHHhcceEEEEecCc
Q 013724 117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-NRGDEISQSLVDAIEASAISLIIFSEG 177 (437)
Q Consensus 117 ~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-~~g~~i~~~l~~~i~~S~~~i~i~S~~ 177 (437)
.-+|.||+.||=+-+.+...|.+.+++.|+.+++ ..|.. ++.++.+ ...+..+.+|=+
T Consensus 130 ~~~v~iSl~GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~--~e~l~~L-~~~~d~i~VSLd 188 (322)
T PRK13762 130 PKHVAISLSGEPTLYPYLPELIEEFHKRGFTTFLVTNGTR--PDVLEKL-EEEPTQLYVSLD 188 (322)
T ss_pred CCEEEEeCCccccchhhHHHHHHHHHHcCCCEEEECCCCC--HHHHHHH-HhcCCEEEEEcc
Confidence 3478999999988777888999999999999998 66643 5666666 334444444444
No 104
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=30.99 E-value=1.4e+02 Score=23.20 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=38.3
Q ss_pred ceeeccCCC---cccCchHHHHHHHHhcCCceEEe-cCCCchHHHHHHHHH-hcceEEEEe
Q 013724 119 GVPTAIPSE---DTRDNFTSHLYSALSQKSIETFI-NRGDEISQSLVDAIE-ASAISLIIF 174 (437)
Q Consensus 119 dvf~sf~g~---d~r~~f~~~l~~~L~~~g~~~~~-~~g~~i~~~l~~~i~-~S~~~i~i~ 174 (437)
||+|---|+ +. ..++.+|...|...||.+.+ ..+..+...+.+|-. +..+.|+|=
T Consensus 1 qv~Ii~~~~~~~~~-~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG 60 (94)
T PF03129_consen 1 QVVIIPVGKKDEEI-IEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIG 60 (94)
T ss_dssp SEEEEESSCSHHHH-HHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEE
T ss_pred CEEEEEeCCCcHHH-HHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEEC
Confidence 355544455 33 36778999999999999988 577788888888754 455555443
No 105
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=30.42 E-value=23 Score=27.68 Aligned_cols=8 Identities=50% Similarity=1.070 Sum_probs=4.9
Q ss_pred HhhHhhhc
Q 013724 27 WMSQEVRE 34 (437)
Q Consensus 27 ~~~~~~~~ 34 (437)
|||||.=-
T Consensus 24 WmaQElL~ 31 (99)
T COG3526 24 WMAQELLS 31 (99)
T ss_pred HHHHHHHH
Confidence 67776543
No 106
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=29.97 E-value=2.1e+02 Score=23.18 Aligned_cols=58 Identities=17% Similarity=0.081 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCceEEecCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHHhh
Q 013724 134 TSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKI 191 (437)
Q Consensus 134 ~~~l~~~L~~~g~~~~~~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~~i 191 (437)
...+..+|++.|+.+.+-....-.+++.+++++.+.-++.+|-.+.....-..++.+.
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~ 74 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARA 74 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHH
Confidence 3478889999999996622222237888999999999999987654443334444444
No 107
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=28.19 E-value=1.2e+02 Score=29.63 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=49.0
Q ss_pred CCCceeeccCCCcccCchHHHHHHHHhcCCceEEe--cCCCchHHHHHHHHH-hcceEEEEecCcc
Q 013724 116 SYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI--NRGDEISQSLVDAIE-ASAISLIIFSEGY 178 (437)
Q Consensus 116 ~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~--~~g~~i~~~l~~~i~-~S~~~i~i~S~~~ 178 (437)
+++||+|++-|.|- .+.+-.+..+|..+.++..+ .-+...-+++.+..+ ..++-+.+.+.+.
T Consensus 157 ~~r~ilI~lGGsDp-k~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dm 221 (318)
T COG3980 157 PKRDILITLGGSDP-KNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDM 221 (318)
T ss_pred chheEEEEccCCCh-hhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhH
Confidence 58999999999999 67888999999998866655 556777778888766 5667777776653
No 108
>PF11880 DUF3400: Domain of unknown function (DUF3400); InterPro: IPR021817 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 50 amino acids in length. This domain is found associated with PF02754 from PFAM, PF02913 from PFAM, PF01565 from PFAM.
Probab=25.87 E-value=36 Score=23.32 Aligned_cols=14 Identities=29% Similarity=0.781 Sum_probs=12.2
Q ss_pred CCcchHHHHHHHhc
Q 013724 43 SGDDWRSAFDAAAN 56 (437)
Q Consensus 43 ~~~~~~~~~~~~~~ 56 (437)
-|++|...|-++||
T Consensus 23 LGe~W~~~~v~~a~ 36 (45)
T PF11880_consen 23 LGENWQQDYVERAN 36 (45)
T ss_pred hhhhHHHHHHHHHH
Confidence 48999999998885
No 109
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=23.55 E-value=88 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=18.5
Q ss_pred CCCceeeccCCCcccCchHHHHHHHHhcC
Q 013724 116 SYEGVPTAIPSEDTRDNFTSHLYSALSQK 144 (437)
Q Consensus 116 ~~~dvf~sf~g~d~r~~f~~~l~~~L~~~ 144 (437)
++|.+||-+.|+|. . +.++.+.|+..
T Consensus 41 ~~y~Ffvd~~~~~~--~-~~~~l~~L~~~ 66 (74)
T cd04904 41 SEYEFFVDCEVDRG--D-LDQLISSLRRV 66 (74)
T ss_pred ceEEEEEEEEcChH--H-HHHHHHHHHHh
Confidence 37899999999665 2 45666666653
No 110
>PF15576 DUF4661: Domain of unknown function (DUF4661)
Probab=23.48 E-value=24 Score=32.08 Aligned_cols=29 Identities=52% Similarity=0.924 Sum_probs=20.7
Q ss_pred cCCCChH---HHHHHhhHhhhccCCCCCCCCCcchHHHHH
Q 013724 16 RRPADPE---EELRWMSQEVRESSPRTSAASGDDWRSAFD 52 (437)
Q Consensus 16 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (437)
|||.-|+ -|.||| +++| -++|.||-+|=+
T Consensus 2 rk~~~pd~p~pe~rr~-----dSS~---EnSGSDWDSAPe 33 (253)
T PF15576_consen 2 RKPTKPDLPAPEPRRM-----DSSP---ENSGSDWDSAPE 33 (253)
T ss_pred CCCCCCCCCCCCCccC-----CCCc---ccCCCccccccc
Confidence 7777777 899998 3444 346999977644
No 111
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=23.17 E-value=1.2e+02 Score=27.87 Aligned_cols=49 Identities=35% Similarity=0.396 Sum_probs=37.0
Q ss_pred cccCchHHHHHHHHhcCCceEEecCCCchHHHHHHHHHhcceEEEEecCccc
Q 013724 128 DTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYA 179 (437)
Q Consensus 128 d~r~~f~~~l~~~L~~~g~~~~~~~g~~i~~~l~~~i~~S~~~i~i~S~~~~ 179 (437)
|.-+.||-.|++.|++-|..+-.-+++.+... .++..+--.+|+||.=-
T Consensus 8 DNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~---~~~~~~pd~iviSPGPG 56 (191)
T COG0512 8 DNYDSFTYNLVQYLRELGAEVTVVRNDDISLE---LIEALKPDAIVISPGPG 56 (191)
T ss_pred ECccchHHHHHHHHHHcCCceEEEECCccCHH---HHhhcCCCEEEEcCCCC
Confidence 45568999999999998866655566655544 56677778899999853
No 112
>PF12437 GSIII_N: Glutamine synthetase type III N terminal ; InterPro: IPR022147 This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. The family is found in association with PF00120 from PFAM. This family is the N-terminal region of glutamine synthetase type III which is one of the enzymes responsible for generation of glutamine through conversion glutamate to glutamine by the incorporation of ammonia (NH3). ; GO: 0004356 glutamate-ammonia ligase activity; PDB: 3O6X_D.
Probab=22.54 E-value=17 Score=32.10 Aligned_cols=50 Identities=20% Similarity=0.099 Sum_probs=3.4
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCccccceeccCCCC-------CCCCceeeccCCCcc
Q 013724 79 PAENGDVRSGSNSGSRRTPNREGYRYGYILHSHAHF-------DSYEGVPTAIPSEDT 129 (437)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~dvf~sf~g~d~ 129 (437)
-++.+|..|=.+++=|.|=-..||+. |-..|+.-- .--.-|||||.|+-.
T Consensus 99 iqgEpDaSSFPsGGlRsTfeARGYTa-WD~tSPaFi~~~~g~tL~IPt~F~Sy~GeaL 155 (164)
T PF12437_consen 99 IQGEPDASSFPSGGLRSTFEARGYTA-WDPTSPAFIKDSGGGTLCIPTAFVSYTGEAL 155 (164)
T ss_dssp ---------------------------B-TTS-EEEES---SEEEEEB----------
T ss_pred ccCCCccccCCCcccccchhccCccc-ccCCCcHHhhhcccceEEeeeEEEecccccc
Confidence 45788998888888899999999997 533332111 112348889988643
No 113
>COG5250 RPB4 RNA polymerase II, fourth largest subunit [Transcription]
Probab=21.96 E-value=35 Score=28.45 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=35.2
Q ss_pred CCceeeccCCCcccCchHHHHHHHHhcCCceEEe--------------------cCCCchHHHHHHHHHh
Q 013724 117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI--------------------NRGDEISQSLVDAIEA 166 (437)
Q Consensus 117 ~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~--------------------~~g~~i~~~l~~~i~~ 166 (437)
+.|+|+-|+ |. ..+..+...|...|+..|- ..|..|.+.++++|.+
T Consensus 64 Yl~~F~Rfk--d~--e~~~a~~~~L~~~gfh~fEiAqlGsL~c~saeEAktLiPSL~nkidD~~lq~ilk 129 (138)
T COG5250 64 YLDDFCRFK--DK--EVAEALRTTLSGLGFHEFEIAQLGSLFCQSAEEAKTLIPSLGNKIDDAILQAILK 129 (138)
T ss_pred HHHHHHHhh--hH--HHHHHHHHHHccCCcchhhHHHhhccccccHHHHHhhcccccccccHHHHHHHHH
Confidence 568899885 44 5578999999999998764 2477888888888653
No 114
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.47 E-value=2.5e+02 Score=21.22 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=31.7
Q ss_pred CceeeccCCCcccCchHHHHHHHHhcCCceEEe-cCCCchHHHHHHH
Q 013724 118 EGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-NRGDEISQSLVDA 163 (437)
Q Consensus 118 ~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-~~g~~i~~~l~~~ 163 (437)
|||+|..-+++. ....-.++..|+..|+.+.+ -++..+...+..|
T Consensus 2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a 47 (91)
T cd00860 2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREA 47 (91)
T ss_pred eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Confidence 577766555443 34566889999999999987 4566776666665
No 115
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.16 E-value=2.3e+02 Score=23.36 Aligned_cols=61 Identities=7% Similarity=-0.035 Sum_probs=39.5
Q ss_pred CCCCceeeccCC--CcccCchHHHHHHHHhcCCceEEe-cCCCchHHHHHHHHHhcceEEEEecCc
Q 013724 115 DSYEGVPTAIPS--EDTRDNFTSHLYSALSQKSIETFI-NRGDEISQSLVDAIEASAISLIIFSEG 177 (437)
Q Consensus 115 ~~~~dvf~sf~g--~d~r~~f~~~l~~~L~~~g~~~~~-~~g~~i~~~l~~~i~~S~~~i~i~S~~ 177 (437)
...+||+|..-+ ++. ....-.++..|+..|+.+.+ -. ..+...+.+|=..---.++|+.++
T Consensus 24 lap~~v~Ii~~~~~~~~-~~~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 24 LAPIKVAVLPLVKRDEL-VEIAKEISEELRELGFSVKYDDS-GSIGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred cCCcEEEEEecCCcHHH-HHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhcCCCEEEEECcC
Confidence 347898887766 333 34556789999999999988 44 677766666633222234455544
Done!