Query 013724
Match_columns 437
No_of_seqs 461 out of 3476
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:55:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 6.6E-39 2.3E-43 291.1 4.3 137 115-253 33-176 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 6.4E-39 2.2E-43 286.6 2.5 137 115-253 6-148 (176)
3 3h16_A TIR protein; bacteria T 99.9 2.4E-26 8.2E-31 203.0 7.9 115 115-230 18-137 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.8 2.9E-22 9.9E-27 174.9 1.3 130 112-246 5-145 (146)
5 4fcg_A Uncharacterized protein 99.8 4.3E-18 1.5E-22 168.0 13.7 130 266-397 123-263 (328)
6 1fyx_A TOLL-like receptor 2; b 99.7 3.7E-19 1.3E-23 155.9 4.1 93 115-209 3-104 (149)
7 2j67_A TOLL like receptor 10; 99.7 1.2E-18 4E-23 156.9 7.2 98 112-211 30-136 (178)
8 1t3g_A X-linked interleukin-1 99.7 1.6E-18 5.5E-23 153.3 7.3 96 116-211 1-114 (159)
9 4fcg_A Uncharacterized protein 99.7 1.2E-17 4.2E-22 164.7 11.9 173 245-423 128-311 (328)
10 2js7_A Myeloid differentiation 99.7 2.3E-18 7.9E-23 152.5 1.6 95 115-211 14-117 (160)
11 1ogq_A PGIP-2, polygalacturona 99.6 1.1E-16 3.8E-21 156.6 7.2 176 245-426 77-257 (313)
12 2o6q_A Variable lymphocyte rec 99.6 1.1E-14 3.6E-19 139.3 17.1 126 267-395 82-213 (270)
13 1ogq_A PGIP-2, polygalacturona 99.6 7E-16 2.4E-20 150.9 8.2 177 244-426 101-281 (313)
14 3rgz_A Protein brassinosteroid 99.6 1.3E-15 4.5E-20 166.7 11.2 81 316-396 632-713 (768)
15 3m19_A Variable lymphocyte rec 99.6 7.9E-15 2.7E-19 138.6 15.2 150 245-398 36-190 (251)
16 1ozn_A Reticulon 4 receptor; N 99.6 4.3E-15 1.5E-19 142.8 13.2 131 266-396 101-234 (285)
17 3rfs_A Internalin B, repeat mo 99.6 1.5E-14 5E-19 138.5 16.2 147 245-397 64-215 (272)
18 3rgz_A Protein brassinosteroid 99.6 3.6E-15 1.2E-19 163.2 13.3 83 339-423 632-714 (768)
19 1ozn_A Reticulon 4 receptor; N 99.6 1.7E-14 5.9E-19 138.6 15.8 178 245-427 57-239 (285)
20 4ezg_A Putative uncharacterize 99.6 4.6E-15 1.6E-19 135.1 10.8 128 267-398 41-170 (197)
21 3rfs_A Internalin B, repeat mo 99.6 2.4E-14 8E-19 137.1 14.7 174 245-426 42-218 (272)
22 3zyi_A Leucine-rich repeat-con 99.6 1.2E-14 4.2E-19 149.0 13.5 175 246-426 125-303 (452)
23 3zyj_A Leucine-rich repeat-con 99.6 1.3E-14 4.4E-19 148.4 13.3 175 246-426 114-292 (440)
24 2o6q_A Variable lymphocyte rec 99.6 4.7E-14 1.6E-18 134.7 15.3 177 245-427 38-219 (270)
25 1h6u_A Internalin H; cell adhe 99.5 4.7E-14 1.6E-18 137.6 15.1 125 266-397 81-205 (308)
26 3zyi_A Leucine-rich repeat-con 99.5 4.6E-14 1.6E-18 144.8 15.6 175 245-426 100-279 (452)
27 1p9a_G Platelet glycoprotein I 99.5 4.3E-14 1.5E-18 136.8 14.3 147 244-397 55-205 (290)
28 4ezg_A Putative uncharacterize 99.5 2.7E-14 9.2E-19 130.0 12.1 148 243-398 43-192 (197)
29 3e6j_A Variable lymphocyte rec 99.5 7.7E-14 2.6E-18 130.3 15.2 125 270-397 40-169 (229)
30 2ell_A Acidic leucine-rich nuc 99.5 2.9E-14 9.9E-19 126.1 11.7 128 269-399 23-159 (168)
31 3m19_A Variable lymphocyte rec 99.5 1.5E-13 5.2E-18 129.7 17.4 155 270-427 35-193 (251)
32 3zyj_A Leucine-rich repeat-con 99.5 7E-14 2.4E-18 142.9 15.4 175 245-426 89-268 (440)
33 3o6n_A APL1; leucine-rich repe 99.5 5.6E-14 1.9E-18 141.1 14.3 37 267-304 138-176 (390)
34 3oja_B Anopheles plasmodium-re 99.5 4.2E-14 1.4E-18 150.3 13.8 38 267-304 144-182 (597)
35 2z66_A Variable lymphocyte rec 99.5 2.1E-14 7.3E-19 139.2 10.3 129 268-397 99-233 (306)
36 3vq2_A TLR4, TOLL-like recepto 99.5 2.4E-14 8.3E-19 151.7 11.4 177 245-427 377-559 (606)
37 2z62_A TOLL-like receptor 4, v 99.5 3E-14 1E-18 136.2 11.0 176 245-427 53-238 (276)
38 2xwt_C Thyrotropin receptor; s 99.5 4.3E-14 1.5E-18 132.3 11.7 147 246-397 33-189 (239)
39 3e6j_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 129.0 14.7 133 244-380 40-176 (229)
40 4eco_A Uncharacterized protein 99.5 6.3E-14 2.2E-18 150.2 14.5 174 245-428 403-602 (636)
41 2v9t_B SLIT homolog 2 protein 99.5 1.1E-13 3.9E-18 128.4 14.4 127 270-397 32-162 (220)
42 1h6u_A Internalin H; cell adhe 99.5 4.4E-14 1.5E-18 137.8 11.8 144 245-399 86-229 (308)
43 2z66_A Variable lymphocyte rec 99.5 1.2E-14 4.2E-19 141.0 7.7 179 245-426 53-236 (306)
44 2je0_A Acidic leucine-rich nuc 99.5 2.4E-14 8.1E-19 124.1 8.8 125 269-395 16-148 (149)
45 1wwl_A Monocyte differentiatio 99.5 4E-14 1.4E-18 138.2 11.0 175 245-426 96-287 (312)
46 4eco_A Uncharacterized protein 99.5 1.3E-14 4.4E-19 155.5 8.2 154 268-426 247-415 (636)
47 1h6t_A Internalin B; cell adhe 99.5 9.4E-14 3.2E-18 134.5 12.8 122 268-396 88-209 (291)
48 1xku_A Decorin; proteoglycan, 99.5 1.7E-13 5.8E-18 134.4 14.1 127 267-397 142-273 (330)
49 1m9s_A Internalin B; cell inva 99.5 1.6E-13 5.6E-18 146.1 14.6 144 245-399 66-209 (605)
50 2id5_A Lingo-1, leucine rich r 99.5 1.5E-13 5.1E-18 141.6 13.8 150 245-398 57-211 (477)
51 3v47_A TOLL-like receptor 5B a 99.5 2.2E-13 7.5E-18 139.1 14.9 133 293-427 275-409 (455)
52 3v47_A TOLL-like receptor 5B a 99.5 1.2E-13 4.3E-18 140.9 12.9 180 245-427 130-385 (455)
53 4ecn_A Leucine-rich repeat pro 99.5 1.7E-14 5.8E-19 159.4 6.7 152 245-399 449-631 (876)
54 2z62_A TOLL-like receptor 4, v 99.5 1.1E-13 3.9E-18 132.2 11.7 126 267-395 97-232 (276)
55 3vq2_A TLR4, TOLL-like recepto 99.5 2.9E-14 1E-18 151.1 8.3 179 245-426 351-534 (606)
56 2v70_A SLIT-2, SLIT homolog 2 99.5 2.9E-13 1E-17 125.6 14.1 127 270-397 32-163 (220)
57 4ecn_A Leucine-rich repeat pro 99.5 2.9E-13 9.9E-18 149.6 16.1 80 315-396 696-785 (876)
58 2o6s_A Variable lymphocyte rec 99.5 6.4E-13 2.2E-17 121.6 15.7 126 270-397 28-158 (208)
59 2z63_A TOLL-like receptor 4, v 99.5 2.7E-14 9.4E-19 149.8 7.1 157 267-426 370-531 (570)
60 2id5_A Lingo-1, leucine rich r 99.5 2.7E-13 9.3E-18 139.6 14.4 178 245-426 81-285 (477)
61 4glp_A Monocyte differentiatio 99.5 7.7E-14 2.6E-18 135.9 9.7 152 245-398 92-262 (310)
62 1a9n_A U2A', U2A'; complex (nu 99.5 9.4E-14 3.2E-18 124.1 9.4 130 267-400 16-153 (176)
63 2z80_A TOLL-like receptor 2, v 99.5 5.2E-14 1.8E-18 139.5 8.4 147 246-395 54-206 (353)
64 1xku_A Decorin; proteoglycan, 99.5 3.7E-13 1.3E-17 132.0 14.1 133 291-428 143-278 (330)
65 3oja_B Anopheles plasmodium-re 99.5 4.2E-13 1.4E-17 142.6 15.4 84 245-331 100-186 (597)
66 1p9a_G Platelet glycoprotein I 99.5 6.2E-13 2.1E-17 128.7 15.3 176 244-428 31-210 (290)
67 2z81_A CD282 antigen, TOLL-lik 99.5 4.7E-14 1.6E-18 147.6 7.8 151 245-398 27-183 (549)
68 2v70_A SLIT-2, SLIT homolog 2 99.5 4.2E-13 1.4E-17 124.5 13.4 152 273-428 14-168 (220)
69 4fmz_A Internalin; leucine ric 99.5 7.2E-13 2.5E-17 130.5 15.7 145 244-398 44-188 (347)
70 3o6n_A APL1; leucine-rich repe 99.5 6.2E-13 2.1E-17 133.4 15.5 82 246-330 95-179 (390)
71 1h6t_A Internalin B; cell adhe 99.5 3E-13 1E-17 130.9 12.5 169 243-426 45-213 (291)
72 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.3E-18 122.0 9.0 133 244-382 24-165 (168)
73 3t6q_A CD180 antigen; protein- 99.5 3.7E-13 1.3E-17 142.5 14.1 148 245-395 279-433 (606)
74 1xeu_A Internalin C; cellular 99.5 2.5E-13 8.4E-18 129.6 11.1 144 243-399 40-184 (263)
75 3bz5_A Internalin-J, INLJ; leu 99.5 8.3E-13 2.9E-17 136.0 15.9 142 268-426 83-225 (457)
76 2z80_A TOLL-like receptor 2, v 99.4 3.2E-13 1.1E-17 133.8 12.0 152 270-425 52-210 (353)
77 2v9t_B SLIT homolog 2 protein 99.4 8.6E-13 2.9E-17 122.4 14.1 151 273-428 14-167 (220)
78 2o6s_A Variable lymphocyte rec 99.4 7.2E-13 2.4E-17 121.3 13.2 139 245-394 29-172 (208)
79 4g8a_A TOLL-like receptor 4; l 99.4 5.1E-13 1.8E-17 141.2 14.0 125 271-397 53-183 (635)
80 3t6q_A CD180 antigen; protein- 99.4 2.4E-13 8.1E-18 144.1 11.3 158 266-426 396-560 (606)
81 2ft3_A Biglycan; proteoglycan, 99.4 2.9E-13 9.9E-18 132.9 11.0 147 245-398 124-275 (332)
82 1xeu_A Internalin C; cellular 99.4 6.5E-13 2.2E-17 126.7 13.1 122 267-397 38-160 (263)
83 2z7x_B TOLL-like receptor 1, v 99.4 4.3E-13 1.5E-17 139.5 12.8 173 246-428 304-483 (520)
84 2xwt_C Thyrotropin receptor; s 99.4 3.3E-13 1.1E-17 126.3 10.7 150 245-398 56-216 (239)
85 1wwl_A Monocyte differentiatio 99.4 1.7E-13 5.9E-18 133.7 8.9 171 245-426 122-309 (312)
86 4glp_A Monocyte differentiatio 99.4 1.4E-13 4.7E-18 134.1 8.0 175 245-426 118-307 (310)
87 4fmz_A Internalin; leucine ric 99.4 1.4E-12 4.6E-17 128.5 15.2 151 266-426 106-278 (347)
88 1w8a_A SLIT protein; signaling 99.4 6.5E-13 2.2E-17 120.5 11.8 109 271-380 30-143 (192)
89 3o53_A Protein LRIM1, AGAP0063 99.4 5.5E-14 1.9E-18 137.5 4.4 148 246-397 122-272 (317)
90 2ft3_A Biglycan; proteoglycan, 99.4 8.5E-13 2.9E-17 129.6 12.6 105 317-426 173-277 (332)
91 3j0a_A TOLL-like receptor 5; m 99.4 5.3E-13 1.8E-17 147.5 12.4 152 245-398 25-185 (844)
92 4b8c_D Glucose-repressible alc 99.4 1.4E-13 5E-18 149.6 7.3 120 263-385 217-338 (727)
93 1o6v_A Internalin A; bacterial 99.4 1.5E-12 5.1E-17 134.0 14.6 101 269-374 220-320 (466)
94 2xot_A Amphoterin-induced prot 99.4 4.8E-13 1.6E-17 133.3 10.0 147 246-396 41-198 (361)
95 3bz5_A Internalin-J, INLJ; leu 99.4 3.1E-12 1.1E-16 131.7 16.4 137 245-398 107-244 (457)
96 1m9s_A Internalin B; cell inva 99.4 1.1E-12 3.6E-17 139.9 13.2 167 244-425 43-209 (605)
97 1ziw_A TOLL-like receptor 3; i 99.4 1E-12 3.4E-17 141.2 12.9 150 246-397 27-181 (680)
98 2z81_A CD282 antigen, TOLL-lik 99.4 1.4E-12 4.6E-17 136.4 13.2 129 270-399 26-160 (549)
99 4g8a_A TOLL-like receptor 4; l 99.4 3.6E-13 1.2E-17 142.4 8.3 142 245-389 53-199 (635)
100 2z63_A TOLL-like receptor 4, v 99.4 4.5E-13 1.6E-17 140.5 8.5 151 245-398 374-529 (570)
101 2z7x_B TOLL-like receptor 1, v 99.4 1.1E-12 3.6E-17 136.5 11.0 149 244-398 324-479 (520)
102 1ziw_A TOLL-like receptor 3; i 99.4 1.8E-12 6.3E-17 139.2 13.1 155 270-426 25-184 (680)
103 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 2.3E-12 7.8E-17 135.7 13.1 171 246-426 333-510 (562)
104 2ast_B S-phase kinase-associat 99.4 2.6E-14 8.9E-19 140.1 -2.0 151 245-397 119-282 (336)
105 2je0_A Acidic leucine-rich nuc 99.4 4.4E-13 1.5E-17 116.0 5.8 124 244-372 17-149 (149)
106 3oja_A Leucine-rich immune mol 99.4 3E-13 1E-17 140.4 5.3 123 268-392 142-267 (487)
107 3o53_A Protein LRIM1, AGAP0063 99.4 7.4E-13 2.5E-17 129.4 7.6 148 244-400 99-250 (317)
108 3oja_A Leucine-rich immune mol 99.4 6.7E-13 2.3E-17 137.8 7.6 149 244-400 99-250 (487)
109 3j0a_A TOLL-like receptor 5; m 99.4 3.5E-12 1.2E-16 141.0 13.7 130 269-398 23-159 (844)
110 1o6v_A Internalin A; bacterial 99.3 6.9E-12 2.3E-16 129.0 14.4 144 245-399 178-321 (466)
111 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 3.2E-12 1.1E-16 134.5 12.2 148 244-398 353-508 (562)
112 2xot_A Amphoterin-induced prot 99.3 3.6E-12 1.2E-16 126.9 11.9 128 270-399 39-175 (361)
113 1w8a_A SLIT protein; signaling 99.3 5.7E-12 1.9E-16 114.3 12.1 123 273-397 11-136 (192)
114 2ast_B S-phase kinase-associat 99.3 1.2E-13 4E-18 135.4 0.3 176 244-423 70-257 (336)
115 1ds9_A Outer arm dynein; leuci 99.3 3.2E-14 1.1E-18 129.6 -4.2 151 238-393 10-180 (198)
116 1dce_A Protein (RAB geranylger 99.3 2.8E-12 9.4E-17 135.7 9.7 98 272-374 443-544 (567)
117 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.1E-16 112.4 12.6 105 270-376 31-139 (193)
118 1a9n_A U2A', U2A'; complex (nu 99.3 1.4E-12 4.8E-17 116.4 6.1 125 245-375 20-152 (176)
119 2o6r_A Variable lymphocyte rec 99.3 2.4E-11 8.2E-16 108.2 13.8 110 269-380 27-141 (177)
120 2wfh_A SLIT homolog 2 protein 99.3 2.3E-11 8E-16 110.4 13.1 120 273-397 13-136 (193)
121 3cvr_A Invasion plasmid antige 99.3 1.8E-11 6E-16 129.4 13.4 136 244-399 100-242 (571)
122 4b8c_D Glucose-repressible alc 99.3 3.6E-12 1.2E-16 138.6 8.0 121 275-399 206-328 (727)
123 2o6r_A Variable lymphocyte rec 99.3 2.5E-11 8.6E-16 108.1 12.0 123 272-398 9-135 (177)
124 2r9u_A Variable lymphocyte rec 99.3 2.4E-11 8.1E-16 108.6 11.5 102 272-376 14-118 (174)
125 3cvr_A Invasion plasmid antige 99.3 2E-11 7E-16 128.9 12.4 128 245-388 121-255 (571)
126 3g39_A Variable lymphocyte rec 99.2 7.1E-11 2.4E-15 104.9 12.0 105 271-378 10-117 (170)
127 1dce_A Protein (RAB geranylger 99.2 2.4E-11 8.4E-16 128.4 9.8 119 245-370 442-567 (567)
128 3g06_A SSPH2 (leucine-rich rep 99.2 2.6E-10 9E-15 121.7 16.2 91 246-350 42-132 (622)
129 1jl5_A Outer protein YOPM; leu 99.2 2E-10 6.7E-15 118.1 14.6 136 245-397 132-267 (454)
130 1jl5_A Outer protein YOPM; leu 99.2 2.1E-10 7.1E-15 117.9 14.7 138 244-399 111-249 (454)
131 3g06_A SSPH2 (leucine-rich rep 99.2 2E-10 6.8E-15 122.6 13.8 117 269-399 180-296 (622)
132 1ds9_A Outer arm dynein; leuci 99.1 5.7E-13 1.9E-17 121.3 -6.1 112 284-399 38-152 (198)
133 2ca6_A RAN GTPase-activating p 99.1 2.4E-12 8.2E-17 129.0 -2.3 183 244-426 94-316 (386)
134 2ca6_A RAN GTPase-activating p 99.1 1.9E-12 6.4E-17 129.8 -3.8 157 244-400 122-316 (386)
135 4ay9_X Follicle-stimulating ho 99.1 2.1E-10 7.1E-15 113.6 11.1 150 246-398 32-213 (350)
136 4ay9_X Follicle-stimulating ho 99.0 3.5E-10 1.2E-14 111.9 7.2 106 267-373 101-212 (350)
137 3g39_A Variable lymphocyte rec 99.0 3.6E-09 1.2E-13 93.8 11.3 100 294-397 10-112 (170)
138 2r9u_A Variable lymphocyte rec 99.0 3.6E-09 1.2E-13 94.3 11.4 99 295-398 14-116 (174)
139 2ifg_A High affinity nerve gro 98.9 2.4E-09 8.2E-14 105.4 10.5 101 274-376 12-116 (347)
140 3goz_A Leucine-rich repeat-con 98.9 8.1E-11 2.8E-15 117.0 -1.5 153 245-399 52-237 (362)
141 3ogk_B Coronatine-insensitive 98.9 7.4E-11 2.5E-15 124.3 -2.1 150 246-395 140-326 (592)
142 1z7x_W Ribonuclease inhibitor; 98.8 7.7E-11 2.6E-15 120.2 -5.2 130 245-374 29-181 (461)
143 2ifg_A High affinity nerve gro 98.8 1.3E-08 4.5E-13 100.0 10.1 100 297-397 12-113 (347)
144 1z7x_W Ribonuclease inhibitor; 98.8 1.2E-10 3.9E-15 118.9 -5.4 151 246-398 5-181 (461)
145 3goz_A Leucine-rich repeat-con 98.8 1.5E-09 5E-14 107.9 1.7 156 245-400 23-209 (362)
146 3sb4_A Hypothetical leucine ri 98.7 5.9E-08 2E-12 94.9 10.4 83 338-426 225-310 (329)
147 3un9_A NLR family member X1; l 98.7 1.1E-09 3.8E-14 109.7 -2.3 161 238-399 66-251 (372)
148 2p1m_B Transport inhibitor res 98.6 7.4E-10 2.5E-14 116.5 -5.0 106 268-373 128-245 (594)
149 3ogk_B Coronatine-insensitive 98.6 3.2E-09 1.1E-13 111.7 -1.4 105 245-350 193-304 (592)
150 2p1m_B Transport inhibitor res 98.5 1.1E-08 3.7E-13 107.5 -2.2 131 268-399 370-518 (594)
151 3sb4_A Hypothetical leucine ri 98.4 8.7E-07 3E-11 86.5 9.6 76 315-394 225-304 (329)
152 3un9_A NLR family member X1; l 98.3 1.2E-08 4E-13 102.2 -5.1 156 269-426 71-252 (372)
153 2ra8_A Uncharacterized protein 98.1 6.5E-07 2.2E-11 89.1 1.5 130 266-397 168-317 (362)
154 2ra8_A Uncharacterized protein 98.0 4.2E-06 1.4E-10 83.3 5.9 129 267-397 136-289 (362)
155 3rw6_A Nuclear RNA export fact 98.0 4.4E-06 1.5E-10 79.5 5.0 58 334-393 191-257 (267)
156 3rw6_A Nuclear RNA export fact 97.9 4.2E-06 1.4E-10 79.7 3.9 100 269-370 140-258 (267)
157 3e4g_A ATP synthase subunit S, 97.9 9.3E-06 3.2E-10 72.3 5.8 86 293-378 61-154 (176)
158 4fdw_A Leucine rich hypothetic 97.9 0.00011 3.7E-09 74.0 13.5 152 266-426 176-358 (401)
159 1io0_A Tropomodulin; LRR prote 97.9 1.6E-06 5.6E-11 77.7 0.0 104 269-374 35-162 (185)
160 1io0_A Tropomodulin; LRR prote 97.9 4.6E-06 1.6E-10 74.7 2.6 108 291-399 34-163 (185)
161 3e4g_A ATP synthase subunit S, 97.8 2E-05 6.9E-10 70.1 5.4 87 316-402 61-154 (176)
162 4fdw_A Leucine rich hypothetic 97.5 0.00049 1.7E-08 69.2 11.6 164 246-423 137-310 (401)
163 4h09_A Hypothetical leucine ri 96.2 0.037 1.3E-06 54.3 12.3 119 268-394 215-340 (379)
164 4fs7_A Uncharacterized protein 96.0 0.02 7E-07 56.7 9.4 119 266-395 249-374 (394)
165 4gt6_A Cell surface protein; l 96.0 0.019 6.3E-07 57.0 8.9 99 291-396 263-366 (394)
166 3rfe_A Platelet glycoprotein I 95.9 0.01 3.5E-07 49.7 5.5 34 317-350 32-66 (130)
167 4h09_A Hypothetical leucine ri 95.6 0.03 1E-06 55.0 8.4 107 266-380 236-348 (379)
168 1pgv_A TMD-1, tropomodulin TMD 95.4 0.011 3.6E-07 53.4 3.9 80 270-349 41-136 (197)
169 1pgv_A TMD-1, tropomodulin TMD 94.8 0.0063 2.2E-07 54.9 0.7 105 291-396 39-166 (197)
170 4gt6_A Cell surface protein; l 94.7 0.045 1.5E-06 54.1 6.8 119 266-394 261-385 (394)
171 4fs7_A Uncharacterized protein 94.6 0.2 7E-06 49.3 11.3 121 266-394 67-215 (394)
172 1eiw_A Hypothetical protein MT 94.1 0.029 9.8E-07 45.6 3.0 63 116-193 3-65 (111)
173 3rfe_A Platelet glycoprotein I 93.8 0.099 3.4E-06 43.5 6.0 53 274-329 12-68 (130)
174 1pq1_B BCL2-like protein 11; B 72.5 1.1 3.9E-05 26.9 0.8 8 27-34 7-14 (33)
175 3hyn_A Putative signal transdu 69.2 11 0.00036 33.1 6.5 40 153-192 66-105 (189)
176 3kj0_B BCL-2-like protein 11; 67.4 1.7 5.9E-05 24.8 0.8 9 26-34 8-16 (27)
177 2wh6_B BCL-2-like protein 11; 66.6 1.9 6.3E-05 24.5 0.8 8 27-34 7-14 (26)
178 1pd3_A Nonstructural protein N 62.8 3 0.0001 28.4 1.4 16 22-37 15-30 (58)
179 3ro3_B Minsc, peptide of prote 56.8 3.5 0.00012 22.5 0.7 8 22-29 14-21 (22)
180 2bzw_B BCL2-antagonist of cell 20.7 40 0.0014 19.3 1.1 12 23-34 13-24 (27)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=6.6e-39 Score=291.09 Aligned_cols=137 Identities=36% Similarity=0.624 Sum_probs=127.1
Q ss_pred CCCCceeeccCCCcccCchHHHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHH
Q 013724 115 DSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLV 189 (437)
Q Consensus 115 ~~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~ 189 (437)
.++|||||||||+|+|++|++||+++|+++||++|+ ++|+.|.++|++||++||++|+|||++|++|.||++||+
T Consensus 33 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~ 112 (204)
T 3ozi_A 33 SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELA 112 (204)
T ss_dssp -CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHH
T ss_pred CcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHH
Confidence 458899999999999999999999999999999999 689999999999999999999999999999999999999
Q ss_pred hhhhhccc-cCeEEEeeeecCCCCCCCCCCCccCCchhhhhhhhhcChHHHHHHHHhhhhh-hccc
Q 013724 190 KILQCKRV-YGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEK-IISA 253 (437)
Q Consensus 190 ~il~c~~~-~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~~~~~~~e~l~~W~~aL~~L-~Ls~ 253 (437)
+|++|.+. +++.|+||||+|+|++||+|+|.||++|.+++..+ ..+++++|+.+|++. +|++
T Consensus 113 ~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG 176 (204)
T 3ozi_A 113 EIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKG 176 (204)
T ss_dssp HHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCB
T ss_pred HHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCc
Confidence 99999864 68999999999999999999999999999999876 457899999999984 4444
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=6.4e-39 Score=286.62 Aligned_cols=137 Identities=38% Similarity=0.668 Sum_probs=117.4
Q ss_pred CCCCceeeccCCCcccCchHHHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHH
Q 013724 115 DSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLV 189 (437)
Q Consensus 115 ~~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~ 189 (437)
.++|||||||||+|+|++|++||+++|+++||++|+ ++|+.|.++|++||++||++|+|||+||++|.||++||+
T Consensus 6 ~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~ 85 (176)
T 3jrn_A 6 ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELV 85 (176)
T ss_dssp -CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHH
T ss_pred CCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHH
Confidence 348899999999999999999999999999999999 689999999999999999999999999999999999999
Q ss_pred hhhhhccccCeEEEeeeecCCCCCCCCCCCccCCchhhhhhhhhcChHHHHHHHHhhhhh-hccc
Q 013724 190 KILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEK-IISA 253 (437)
Q Consensus 190 ~il~c~~~~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~~~~~~~e~l~~W~~aL~~L-~Ls~ 253 (437)
+|++|.+..++.|+||||+|+|++||+|+|.||++|.+++.. ...+++++|+.+|++. ++++
T Consensus 86 ~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G 148 (176)
T 3jrn_A 86 TIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSG 148 (176)
T ss_dssp HHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccc
Confidence 999999889999999999999999999999999999999986 5788999999999984 3444
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.93 E-value=2.4e-26 Score=203.03 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=108.1
Q ss_pred CCCCceeeccCCCcccCchHHHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHH
Q 013724 115 DSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLV 189 (437)
Q Consensus 115 ~~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~ 189 (437)
.++|||||||+|+| |..|+.||+++|+++|+++|+ .+|+.|.++|.++|++|+++|+|+|++|++|.||++|+.
T Consensus 18 ~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~ 96 (154)
T 3h16_A 18 APPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELD 96 (154)
T ss_dssp CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHH
T ss_pred CCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHH
Confidence 45889999999999 689999999999999999999 689999999999999999999999999999999999999
Q ss_pred hhhhhccccCeEEEeeeecCCCCCCCCCCCccCCchhhhhh
Q 013724 190 KILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEE 230 (437)
Q Consensus 190 ~il~c~~~~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~ 230 (437)
.+++|...+++.|+||||+++|++|+++.|.|+++|.....
T Consensus 97 ~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~ 137 (154)
T 3h16_A 97 GLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS 137 (154)
T ss_dssp HHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT
T ss_pred HHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC
Confidence 99999888888999999999999999999999998876543
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.83 E-value=2.9e-22 Score=174.87 Aligned_cols=130 Identities=17% Similarity=0.253 Sum_probs=94.4
Q ss_pred CCCCCCCceeeccCCCcccCchHHHHHHHHhc--CCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCcccccccc
Q 013724 112 AHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQ--KSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWF 184 (437)
Q Consensus 112 ~~~~~~~dvf~sf~g~d~r~~f~~~l~~~L~~--~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wc 184 (437)
.++.++|||||||+++|+ .|+.+|+.+|++ +|+++|+ .+|+.|.++|.+||++||++|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 456789999999999999 478999999999 6999998 6899999999999999999999999999999999
Q ss_pred HhhHHhhhhhccccCeEEEeeeecCCCCCC----CCCCCccCCchhhhhhhhhcChHHHHHHHHhh
Q 013724 185 FDKLVKILQCKRVYGQIVLPVFYGVDPAPV----KWPTGSYGDSFLKLEERFKENSEKLQTWRNAL 246 (437)
Q Consensus 185 l~EL~~il~c~~~~~~~vlPiFy~VdpS~V----r~q~gsf~~af~~le~~~~~~~e~l~~W~~aL 246 (437)
..|+..++.+.......++|+||++++.++ +.... ..+...+..+....+.|.+|..+|
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~---id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYY---VDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCC---EETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeee---eeccChHhhHHHHHHHHHHHHHhc
Confidence 999999999863333356799999985554 33322 223344555555566777787654
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=4.3e-18 Score=168.00 Aligned_cols=130 Identities=31% Similarity=0.459 Sum_probs=62.2
Q ss_pred ccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCC---------CCCCCEEEeeCCCCcccChh
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISS---------AANIEEMFLNGTAIEELPSS 334 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~---------l~~L~~L~Ls~n~l~~lp~~ 334 (437)
+..+++|++|+|++|. +..+|..+ .+++|++|+|++|+..+.+|. +.. +++|++|+|++|.|+.+|..
T Consensus 123 ~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~ 201 (328)
T 4fcg_A 123 MQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201 (328)
T ss_dssp GGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG
T ss_pred HhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh
Confidence 3444555555555554 33444444 445555555555444444443 222 44455555555544444444
Q ss_pred hcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724 335 IECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 335 i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
++.+++|+.|+|++|. +..+|..++.+++|++|++++|+..+.+|..++.+++|+.|++.+|
T Consensus 202 l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp GGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred hcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence 4445555555555444 3344444444445555555544444444444444444544444333
No 6
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.75 E-value=3.7e-19 Score=155.90 Aligned_cols=93 Identities=14% Similarity=0.199 Sum_probs=84.0
Q ss_pred CCCCceeeccCCCcccCchHHH-HHHHHhcC--CceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccccHh
Q 013724 115 DSYEGVPTAIPSEDTRDNFTSH-LYSALSQK--SIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFD 186 (437)
Q Consensus 115 ~~~~dvf~sf~g~d~r~~f~~~-l~~~L~~~--g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~ 186 (437)
+++|||||||+|+|+ .|+.+ |+++|+++ |+++|+ .+|+.|.++|.++|++||++|+|+|++|++|.||..
T Consensus 3 ~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~ 80 (149)
T 1fyx_A 3 NIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKY 80 (149)
T ss_dssp SCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHH
T ss_pred CccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHH
Confidence 468999999999999 79996 99999986 999998 689999999999999999999999999999999999
Q ss_pred hHHhhhh-hccccCeEEEeeeecC
Q 013724 187 KLVKILQ-CKRVYGQIVLPVFYGV 209 (437)
Q Consensus 187 EL~~il~-c~~~~~~~vlPiFy~V 209 (437)
|+..++. +....++.++||||+-
T Consensus 81 El~~a~~~~~~~~~~~vIpv~~~~ 104 (149)
T 1fyx_A 81 ELDFSHFRLFDENNDAAILILLEP 104 (149)
T ss_dssp HSCCSCCTTCGGGTTCCEEEESSC
T ss_pred HHHHHHHHHHhcCCCEEEEEEecC
Confidence 9999885 4455667799999953
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.75 E-value=1.2e-18 Score=156.92 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=82.8
Q ss_pred CCCCCCCceeeccCCCcccCchHH-HHHHHHhc--CCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccc
Q 013724 112 AHFDSYEGVPTAIPSEDTRDNFTS-HLYSALSQ--KSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRW 183 (437)
Q Consensus 112 ~~~~~~~dvf~sf~g~d~r~~f~~-~l~~~L~~--~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~W 183 (437)
....++|||||||+|+|+ .|+. +|+.+|++ +|+++|+ .+|+.|.++|.++|++||++|+|+|++|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 345678999999999998 8997 59999998 8999998 689999999999999999999999999999999
Q ss_pred cHhhHHhhhhhc-cccCeEEEeeeecCCC
Q 013724 184 FFDKLVKILQCK-RVYGQIVLPVFYGVDP 211 (437)
Q Consensus 184 cl~EL~~il~c~-~~~~~~vlPiFy~Vdp 211 (437)
|..|+..++.+. +..++.++||||+--+
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 999999998754 4566789999997443
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=153.33 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=85.2
Q ss_pred CCCceeeccCCCcc---------cCchHHHHHH-HHh-cCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccc
Q 013724 116 SYEGVPTAIPSEDT---------RDNFTSHLYS-ALS-QKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYA 179 (437)
Q Consensus 116 ~~~dvf~sf~g~d~---------r~~f~~~l~~-~L~-~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~ 179 (437)
|+|||||||+|+|+ |+.||.|++. +|+ ++|+++|+ .+|+.|.++|.++|++||.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 57999999999997 5689999776 699 79999999 68999999999999999999999999997
Q ss_pred -cccccHhhHHhhhhhc-cccCeEEEeeeecCCC
Q 013724 180 -SSRWFFDKLVKILQCK-RVYGQIVLPVFYGVDP 211 (437)
Q Consensus 180 -sS~Wcl~EL~~il~c~-~~~~~~vlPiFy~Vdp 211 (437)
.|.||..|+..++.+. ...+..++||+|.-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999886 5567789999987544
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=1.2e-17 Score=164.68 Aligned_cols=173 Identities=24% Similarity=0.296 Sum_probs=143.0
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-C---------CCCccEEeeeCCCCCCCCCC-CC
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-H---------LEFLKELDLSGCSKLKRLPD-IS 313 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~---------l~~L~~L~Ls~n~~~~~lp~-l~ 313 (437)
.|+.|++++|... . .|..+..+++|++|++++|..++.+|..+ . +++|++|+|++|.+. .+|. +.
T Consensus 128 ~L~~L~Ls~n~l~-~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~ 203 (328)
T 4fcg_A 128 GLETLTLARNPLR-A--LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA 203 (328)
T ss_dssp TCSEEEEESCCCC-C--CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG
T ss_pred CCCEEECCCCccc-c--CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc
Confidence 4778899888665 2 34457789999999999988888888876 3 899999999998755 7776 88
Q ss_pred CCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceee
Q 013724 314 SAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTT 393 (437)
Q Consensus 314 ~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~ 393 (437)
.+++|++|+|++|.++.+|..++.+++|+.|+|++|...+.+|..++.+++|++|+|++|+.++.+|..+.++++|+.|+
T Consensus 204 ~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred cccccchhhccccccCCCcccccccccCCC
Q 013724 394 FIYVYKFFVETSAASGDDWKSAFDAAADGP 423 (437)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ 423 (437)
+.+|... ...+.....++++..+.....
T Consensus 284 L~~n~~~--~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 284 LRGCVNL--SRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCTTC--CCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCch--hhccHHHhhccCceEEeCCHH
Confidence 8776543 344555555565555554443
No 10
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.69 E-value=2.3e-18 Score=152.48 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=85.1
Q ss_pred CCCCceeeccCCCcccCchHHHHHHHHhcC--CceEEe-----cCCCchHHHHHHHHH-hcceEEEEecCccccccccHh
Q 013724 115 DSYEGVPTAIPSEDTRDNFTSHLYSALSQK--SIETFI-----NRGDEISQSLVDAIE-ASAISLIIFSEGYASSRWFFD 186 (437)
Q Consensus 115 ~~~~dvf~sf~g~d~r~~f~~~l~~~L~~~--g~~~~~-----~~g~~i~~~l~~~i~-~S~~~i~i~S~~~~sS~Wcl~ 186 (437)
.++|||||||+|+|. .|+.+|+.+|++. |+++|+ .+|+.|.++|.++|+ .||++|+|+|++|++|.||..
T Consensus 14 ~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~ 91 (160)
T 2js7_A 14 PERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF 91 (160)
T ss_dssp TTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred CcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence 458899999999997 8999999999994 699998 679999999999999 799999999999999999999
Q ss_pred hHHhhhhhc-cccCeEEEeeeecCCC
Q 013724 187 KLVKILQCK-RVYGQIVLPVFYGVDP 211 (437)
Q Consensus 187 EL~~il~c~-~~~~~~vlPiFy~Vdp 211 (437)
|+..++.+. +..++.++||+|+.-+
T Consensus 92 El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 92 QTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999875 3455689999997653
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=1.1e-16 Score=156.64 Aligned_cols=176 Identities=16% Similarity=0.127 Sum_probs=118.1
Q ss_pred hhhhhhccc-CcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISA-CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~-~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.|+.|++++ ++..+.. |..+..+++|++|++++|.+.+.+|..+ .+++|++|+|++|.+.+.+|. +..+++|++|
T Consensus 77 ~L~~L~L~~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPI--PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp TCSEEEEEEETTEESCC--CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCeeeCCCCCcccccC--ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 466677774 4433332 2345667777777777777555667666 777777777777776666665 7777777777
Q ss_pred EeeCCCCc-ccChhhcCCC-CCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 322 FLNGTAIE-ELPSSIECLY-KLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 322 ~Ls~n~l~-~lp~~i~~L~-~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+|++|.++ .+|..++.++ +|+.|++++|...+.+|..+..++ |+.|++++|...+.+|..+..+++|+.|++.++..
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 77777777 6777777776 777777777775556777777776 77777777776667777778888888888766544
Q ss_pred hhhccccccCCCcccccccccCCCCCC
Q 013724 400 FFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
.. .. ......+.++.+..+++.+.
T Consensus 234 ~~--~~-~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 234 AF--DL-GKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp CC--BG-GGCCCCTTCCEEECCSSCCE
T ss_pred ee--ec-CcccccCCCCEEECcCCccc
Confidence 21 11 11334566666666666554
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=1.1e-14 Score=139.26 Aligned_cols=126 Identities=28% Similarity=0.345 Sum_probs=60.0
Q ss_pred cccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCC
Q 013724 267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLL 342 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~ 342 (437)
..+++|++|++++|. +..+|... .+++|++|+|++|.+....+. +..+++|++|+|++|.|+.+|.. +..+++|+
T Consensus 82 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 82 KELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp SSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 344555555555554 33333322 455555555555443333333 44555555555555555544433 44555555
Q ss_pred EEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeecc
Q 013724 343 HLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFI 395 (437)
Q Consensus 343 ~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~ 395 (437)
.|+|++|. ++.+|. .+..+++|++|+|++|... .+| ..+..+++|+.|++.
T Consensus 161 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 161 ELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECC
T ss_pred eeEecCCc-CcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEec
Confidence 55555554 333332 3445555555555554332 233 234455555555543
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.61 E-value=7e-16 Score=150.95 Aligned_cols=177 Identities=18% Similarity=0.115 Sum_probs=139.8
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCC-CCCE
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAA-NIEE 320 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~-~L~~ 320 (437)
..|+.|++++|...+..+ ..+..+++|++|++++|.+.+.+|..+ .+++|++|+|++|.+.+.+|. +..++ +|+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIP--DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp TTCSEEEEEEECCEEECC--GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred CCCCEEECcCCeeCCcCC--HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence 357778888887654433 356778999999999998666888888 899999999999987767776 88887 8999
Q ss_pred EEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 321 MFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 321 L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
|+|++|.++ .+|..+..++ |+.|+|++|...+.+|..+..+++|+.|++++|...+.+|. +..+++|+.|++.++..
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc
Confidence 999999998 7888888887 99999999986667888899999999999999887766665 78889999999866654
Q ss_pred hhhccccccCCCcccccccccCCCCCC
Q 013724 400 FFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
. ...+.....++.++.+..+++.+.
T Consensus 257 ~--~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 257 Y--GTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp E--ECCCGGGGGCTTCCEEECCSSEEE
T ss_pred c--CcCChHHhcCcCCCEEECcCCccc
Confidence 2 233444445566666666665443
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.61 E-value=1.3e-15 Score=166.66 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=40.5
Q ss_pred CCCCEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724 316 ANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF 394 (437)
Q Consensus 316 ~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~ 394 (437)
++|+.|+|++|.++ .+|..++.|++|+.|+|++|...+.+|..++++++|+.|+|++|...+.+|..++.++.|+.|++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 33444444444444 44444555555555555555544455555555555555555555544555555555555555554
Q ss_pred cc
Q 013724 395 IY 396 (437)
Q Consensus 395 ~~ 396 (437)
.+
T Consensus 712 s~ 713 (768)
T 3rgz_A 712 SN 713 (768)
T ss_dssp CS
T ss_pred cC
Confidence 33
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=7.9e-15 Score=138.59 Aligned_cols=150 Identities=23% Similarity=0.267 Sum_probs=121.2
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.++.|++++|...+..+ ..+..+++|++|+|++|. +..++.. + .+++|++|+|++|.+....+. +..+++|++|
T Consensus 36 ~l~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSD--ATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TCCEEECTTSCCCCCCT--TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEccCCCcCccCH--hHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 46778888877654332 346678999999999998 4455544 4 899999999999886655555 7899999999
Q ss_pred EeeCCCCcccChh-hcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724 322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 322 ~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~ 398 (437)
+|++|.|+.+|.. +..+++|+.|+|++|. ++.+|. .+..+++|++|+|++|...+..+..+..+++|+.|++.++.
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 9999999988775 5889999999999998 666665 68999999999999987665555678899999999987644
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=4.3e-15 Score=142.80 Aligned_cols=131 Identities=21% Similarity=0.188 Sum_probs=64.4
Q ss_pred ccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCC
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLL 342 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~ 342 (437)
+..+++|++|++++|.+.+..|..+ .+++|++|+|++|.+....+. +..+++|+.|+|++|.++.+|. .+..+++|+
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 3345555555555555222222233 455555555555543333333 4555555555555555555443 245555555
Q ss_pred EEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccc
Q 013724 343 HLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIY 396 (437)
Q Consensus 343 ~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~ 396 (437)
.|+|++|...+..|..+..+++|+.|++++|...+..+..+..+++|+.|++.+
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence 555555553333345555555555555555543333333455555555555543
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=1.5e-14 Score=138.50 Aligned_cols=147 Identities=24% Similarity=0.226 Sum_probs=80.7
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.|+.|++++|...+. ..+..+++|++|++++|. +..++.. + .+++|++|+|++|.+....+. +..+++|++|
T Consensus 64 ~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 64 NVRYLALGGNKLHDI----SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp TCCEEECTTSCCCCC----GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEECCCCCCCCc----hhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 355555555543321 134455666666666665 3344433 2 566666666666654443333 5566666666
Q ss_pred EeeCCCCcccChh-hcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724 322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 322 ~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
+|++|.++.+|.. ++.+++|+.|++++|. ++.+|. .++.+++|++|++++|...+..|..+..+++|+.|++.++
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 6666666655443 4566666666666665 333333 3456666666666666544444444566666666665443
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=3.6e-15 Score=163.19 Aligned_cols=83 Identities=10% Similarity=0.015 Sum_probs=43.7
Q ss_pred CCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCccccccc
Q 013724 339 YKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDA 418 (437)
Q Consensus 339 ~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (437)
++|+.|+|++|...+.+|..++++++|+.|+|++|...+.+|..++++++|+.|++.++. +....+......+.++.+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~--l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK--LDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--CEECCCGGGGGCCCCSEE
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc--ccCcCChHHhCCCCCCEE
Confidence 445555555555445555556666666666666666555666666666666666654332 222333333444445555
Q ss_pred ccCCC
Q 013724 419 AADGP 423 (437)
Q Consensus 419 ~~s~~ 423 (437)
..+.+
T Consensus 710 ~ls~N 714 (768)
T 3rgz_A 710 DLSNN 714 (768)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 44444
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=1.7e-14 Score=138.55 Aligned_cols=178 Identities=19% Similarity=0.184 Sum_probs=132.2
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCc-CccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~l-p~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.|+.|++++|...... +..+..+++|++|++++|..++.+ |..+ .+++|++|+|++|.+....|. +..+++|++|
T Consensus 57 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 57 NLTILWLHSNVLARID--AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp TCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCccceeC--HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 5777888877554322 234567888999999988656666 4445 888999999998876665565 7888999999
Q ss_pred EeeCCCCcccChh-hcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 322 ~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+|++|.++.+|.. ++.+++|+.|+|++|. ++.+|. .+..+++|++|++++|...+..|..+..+++|+.|++.++..
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence 9999988877654 7888999999999887 666665 478889999999998887776788888899999998866543
Q ss_pred hhhccccccCCCcccccccccCCCCCCc
Q 013724 400 FFVETSAASGDDWKSAFDAAADGPVKPS 427 (437)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~~ 427 (437)
. ...+.....++.++.+..+++.+.+
T Consensus 214 ~--~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 214 S--ALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp S--CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred C--cCCHHHcccCcccCEEeccCCCccC
Confidence 3 2222234556777888888876664
No 20
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=4.6e-15 Score=135.11 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=77.8
Q ss_pred cccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcc-cChhhcCCCCCCEE
Q 013724 267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEE-LPSSIECLYKLLHL 344 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~-lp~~i~~L~~L~~L 344 (437)
..+++|+.|++++|. +..+| .+ .+++|++|++++| .+..++.+..+++|++|+|++|.++. .|..++.+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 445666666666665 44555 33 6666666666666 33444456666666666666666663 45566666666666
Q ss_pred eccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724 345 DLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 345 ~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~ 398 (437)
++++|......|..+..+++|++|++++|..++.+| .+..+++|+.|++.+|.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC
Confidence 666666444455556666666666666665555565 46666666666665543
No 21
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=2.4e-14 Score=137.05 Aligned_cols=174 Identities=20% Similarity=0.112 Sum_probs=113.0
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEe
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL 323 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~L 323 (437)
.|+.+++.+|.... . ..+..+++|++|++++|. +..++....+++|++|+|++|.+....+. +..+++|++|+|
T Consensus 42 ~L~~L~l~~~~i~~-~---~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-V---QGIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TCCEEECTTSCCCC-C---TTGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ceeeeeeCCCCccc-c---cccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 45666666654322 1 125567788888888877 55554322778888888888765544444 677888888888
Q ss_pred eCCCCcccChh-hcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchh
Q 013724 324 NGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFF 401 (437)
Q Consensus 324 s~n~l~~lp~~-i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~ 401 (437)
++|.++.+|.. ++.+++|++|++++|. ++.+|. .++.+++|++|++++|...+..|..+..+++|+.|++.++...
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~- 194 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK- 194 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC-
Confidence 88888866554 6778888888888876 455544 3577888888888887655444445677788888877655432
Q ss_pred hccccccCCCcccccccccCCCCCC
Q 013724 402 VETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 402 ~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
...+.....++.++.+..+++.+.
T Consensus 195 -~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 195 -SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -ccCHHHHhCCcCCCEEEccCCCcc
Confidence 222233445666666666665544
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.57 E-value=1.2e-14 Score=149.02 Aligned_cols=175 Identities=17% Similarity=0.116 Sum_probs=89.1
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEE
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L 321 (437)
|+.|+|++|.... .+ +..+..+++|++|+|++|. +..+|... .+++|+.|+|++|+.++.++. +..+++|++|
T Consensus 125 L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 125 LNTLELFDNWLTV-IP-SGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CCEEECCSSCCSB-CC-TTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCcCCc-cC-hhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 5555555554332 11 1234445666666666665 44444432 555666666665555554443 5555666666
Q ss_pred EeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchh
Q 013724 322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFF 401 (437)
Q Consensus 322 ~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~ 401 (437)
+|++|.++.+| .+..+++|+.|+|++|...+..|..+.++++|+.|+|++|...+..|..+..+++|+.|++.++...
T Consensus 202 ~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~- 279 (452)
T 3zyi_A 202 NLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS- 279 (452)
T ss_dssp ECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-
T ss_pred ECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-
Confidence 66666655554 3555556666666665533333455555566666666555544444555555555665555443221
Q ss_pred hccccccCCCcccccccccCCCCCC
Q 013724 402 VETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 402 ~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
.........+..++.+..+++.+.
T Consensus 280 -~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 280 -SLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp -CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred -ccChHHhccccCCCEEEccCCCcC
Confidence 111222233444555555555444
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=148.41 Aligned_cols=175 Identities=18% Similarity=0.112 Sum_probs=90.9
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEE
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L 321 (437)
|+.|+|++|.... .+ +..+..+++|++|+|++|. +..+|... .+++|+.|+|++|+.+..++. +..+++|++|
T Consensus 114 L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 114 LNTLELFDNRLTT-IP-NGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CCEEECCSSCCSS-CC-TTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CCEEECCCCcCCe-eC-HhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 5556666654332 11 1234456666666666665 44444422 556666666666555554443 5556666666
Q ss_pred EeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchh
Q 013724 322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFF 401 (437)
Q Consensus 322 ~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~ 401 (437)
+|++|.|+.+|. +..+++|+.|+|++|...+..|..+..+++|+.|+|++|...+..|..+..+++|+.|++.++...
T Consensus 191 ~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~- 268 (440)
T 3zyj_A 191 NLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT- 268 (440)
T ss_dssp ECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-
T ss_pred cCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-
Confidence 666666665552 555666666666666533333455556666666666655544444455555666666655443222
Q ss_pred hccccccCCCcccccccccCCCCCC
Q 013724 402 VETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 402 ~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
.........+..++.+..+++.+.
T Consensus 269 -~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 269 -LLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp -CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred -ccChhHhccccCCCEEEcCCCCcc
Confidence 111222233445555555555444
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=4.7e-14 Score=134.70 Aligned_cols=177 Identities=23% Similarity=0.203 Sum_probs=137.8
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.++.|++++|..... + +..+..+++|++|++++|. +..+|... .+++|++|+|++|.+....+. +..+++|++|
T Consensus 38 ~l~~L~l~~n~l~~~-~-~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSL-P-SKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TCSEEECCSSCCSCC-C-TTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCEEECcCCCCCee-C-HHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 467888888865432 2 2346779999999999998 66777765 799999999999876654444 7899999999
Q ss_pred EeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 322 ~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+|++|.++.+|. .++.+++|++|+|++|. ++.+|.. +..+++|++|+|++|......+..+..+++|+.|++.++..
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 999999998765 57899999999999998 6677654 78999999999999875554445688999999999877643
Q ss_pred hhhccccccCCCcccccccccCCCCCCc
Q 013724 400 FFVETSAASGDDWKSAFDAAADGPVKPS 427 (437)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~~ 427 (437)
. .........+..++.+..+++.+.+
T Consensus 194 ~--~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 194 K--RVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp S--CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred C--cCCHHHhccccCCCEEEecCCCeeC
Confidence 3 2222334556778888888777653
No 25
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=4.7e-14 Score=137.63 Aligned_cols=125 Identities=20% Similarity=0.298 Sum_probs=64.4
Q ss_pred ccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~ 345 (437)
+..+++|++|++++|. +..++....+++|+.|+|++|.+ ..++.+..+++|+.|+|++|.++.++. ++.+++|+.|+
T Consensus 81 ~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 81 LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLS 157 (308)
T ss_dssp GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCCC-CCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEE
Confidence 3445555555555555 44444222555555555555543 223445555555555555555555543 55555555555
Q ss_pred ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724 346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
+++|. +..++. +..+++|+.|++++|.. ..++. +..+++|+.|++.+|
T Consensus 158 l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 158 IGNAQ-VSDLTP-LANLSKLTTLKADDNKI-SDISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp CCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECTTS
T ss_pred ccCCc-CCCChh-hcCCCCCCEEECCCCcc-CcChh-hcCCCCCCEEEccCC
Confidence 55554 444444 55555566666655443 33332 455555555555444
No 26
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=4.6e-14 Score=144.79 Aligned_cols=175 Identities=19% Similarity=0.153 Sum_probs=111.0
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.|+.|+|++|...... +..+..+++|++|+|++|. +..+|.. + .+++|++|+|++|.+....+. +..+++|+.|
T Consensus 100 ~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCccCCcC--hhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 4555666665443221 1234456667777777766 4455544 3 566777777776654432222 6667777777
Q ss_pred EeeC-CCCcccCh-hhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 322 FLNG-TAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 322 ~Ls~-n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+|++ +.+..++. .+..+++|+.|+|++|. +..+|. +..+++|+.|+|++|...+..|..+..+++|+.|++.++..
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 7766 45555554 46677777777777776 566653 67778888888888776666677888888888888765543
Q ss_pred hhhccccccCCCcccccccccCCCCCC
Q 013724 400 FFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
. ...+.....+..++.+..+++.+.
T Consensus 255 ~--~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 255 S--LIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp C--EECTTTTTTCTTCCEEECCSSCCS
T ss_pred c--eECHHHhcCCCCCCEEECCCCcCC
Confidence 3 222334455677777777777665
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=4.3e-14 Score=136.85 Aligned_cols=147 Identities=24% Similarity=0.265 Sum_probs=115.4
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
..|+.|++++|....... ...+++|+.|++++|. +..+|..+ .+++|++|+|++|.+....|. |..+++|++|
T Consensus 55 ~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKLQV----DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp TTCCEEECTTSCCCEEEC----CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCcccC----CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 356778888776543221 2567889999999987 67888777 888999999999876655545 8889999999
Q ss_pred EeeCCCCcccChh-hcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724 322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 322 ~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
+|++|.|+.+|.. +..+++|+.|+|++|+ ++.+|.. +..+++|++|+|++|. +..+|..+..+.+|+.|++.++
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCC
Confidence 9999999988764 5788999999999988 6777765 5778999999998865 5588888888888988887643
No 28
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.7e-14 Score=129.99 Aligned_cols=148 Identities=15% Similarity=0.093 Sum_probs=122.1
Q ss_pred HHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 243 RNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 243 ~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
...|+.|++++|... ..+ .+..+++|++|++++|. +..++....+++|++|+|++|.+....|. +..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~---~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT---GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT---TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH---HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 346788999887654 222 36778999999999996 66665333999999999999987664454 9999999999
Q ss_pred EeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724 322 FLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 322 ~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~ 398 (437)
+|++|.++ ..|..++.+++|+.|++++|..++.+| .+..+++|++|++++|.. ..++ .+..+++|+.|++.+..
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCEEEeeCcc
Confidence 99999999 478889999999999999998788887 689999999999999874 5566 78899999999975543
No 29
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=7.7e-14 Score=130.25 Aligned_cols=125 Identities=25% Similarity=0.247 Sum_probs=93.9
Q ss_pred CceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCC-C-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEe
Q 013724 270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLD 345 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp-~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~ 345 (437)
++|++|+|++|.+.+..|..+ .+++|++|+|++|.+ ..+| . +..+++|+.|+|++|.|+.+|.. +..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 678888888888444335555 788888888888765 4444 3 67888888888888888877654 57788888888
Q ss_pred ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeecccc
Q 013724 346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFIYV 397 (437)
Q Consensus 346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~~~ 397 (437)
|++|. +..+|..+..+++|++|+|++|... .+| ..+..+++|+.|++.++
T Consensus 119 Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 119 MCCNK-LTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCSSC-CCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred ccCCc-ccccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCC
Confidence 88887 6688888888888888888887544 444 45778888888887543
No 30
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=2.9e-14 Score=126.15 Aligned_cols=128 Identities=24% Similarity=0.231 Sum_probs=106.0
Q ss_pred cCceEEEeccCCCCC-CCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcc-cChhhcCCCCCCEEe
Q 013724 269 LNTLVVLNLRDCKSL-KSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEE-LPSSIECLYKLLHLD 345 (437)
Q Consensus 269 l~~L~~L~Ls~n~~l-~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~-lp~~i~~L~~L~~L~ 345 (437)
.++|+.|++++|.+. +.+|..+ .+++|++|+|++|.+.. ++.+..+++|++|+|++|.+.. +|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-CSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-hhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 367899999999843 3788877 88999999999987554 4668899999999999999996 777777899999999
Q ss_pred ccCCCCCCCCc--cccCCCCCCCEEeeeCCCCCCccch----hccCCCCCceeecccccc
Q 013724 346 LEDCKSLKSLP--SGLCKLKSLKYLTLNGCSILQRLNF----DIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 346 L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~~l~~lP~----~l~~L~~L~~L~~~~~~~ 399 (437)
|++|. ++.+| ..+..+++|++|++++|+.. .+|. .+..+++|+.|++.+|..
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCCh
Confidence 99997 77776 67899999999999998754 4554 788999999998866654
No 31
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=1.5e-13 Score=129.69 Aligned_cols=155 Identities=19% Similarity=0.092 Sum_probs=124.2
Q ss_pred CceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEec
Q 013724 270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDL 346 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L 346 (437)
++|+.|+|++|.+.+..+..+ .+++|++|+|++|.+....|. +..+++|++|+|++|.|+.+|. .+..+++|+.|+|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 689999999999444344445 899999999999987776665 8999999999999999998875 5789999999999
Q ss_pred cCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCC
Q 013724 347 EDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVK 425 (437)
Q Consensus 347 ~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~ 425 (437)
++|. ++.+|.. +..+++|++|+|++|...+-.+..+..+++|+.|++.++... ...+.....++.++.+..+++.+
T Consensus 115 ~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 115 GGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ--SVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC--ccCHHHHhCCCCCCEEEeeCCce
Confidence 9998 6677655 689999999999998655444447899999999998766433 23333455677888888888877
Q ss_pred Cc
Q 013724 426 PS 427 (437)
Q Consensus 426 ~~ 427 (437)
.+
T Consensus 192 ~c 193 (251)
T 3m19_A 192 DC 193 (251)
T ss_dssp CT
T ss_pred eC
Confidence 64
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.53 E-value=7e-14 Score=142.90 Aligned_cols=175 Identities=21% Similarity=0.173 Sum_probs=107.6
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.|+.|+|++|...... +..+..+++|+.|+|++|. +..+|.. + .+++|++|+|++|.+....+. +..+++|+.|
T Consensus 89 ~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIE--IGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SCCEEECCSSCCCEEC--GGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCCccC--hhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 3555666665433211 1234456666777776665 4455543 3 666677777776654433332 6666777777
Q ss_pred EeeC-CCCcccCh-hhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 322 FLNG-TAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 322 ~Ls~-n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+|++ +.+..++. .+..+++|+.|+|++|. +..+|. +..+++|+.|+|++|...+..|..+..+++|+.|++.++..
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 7766 44555554 46677777777777776 666664 67777788888877766555577778888888887755433
Q ss_pred hhhccccccCCCcccccccccCCCCCC
Q 013724 400 FFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
. ...+.....++.++.+..+++.+.
T Consensus 244 ~--~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 244 Q--VIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp C--EECTTSSTTCTTCCEEECTTSCCC
T ss_pred e--EEChhhhcCCCCCCEEECCCCCCC
Confidence 2 222334455677777777777665
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.53 E-value=5.6e-14 Score=141.08 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=17.9
Q ss_pred cccCceEEEeccCCCCCCCcC-ccC-CCCCccEEeeeCCC
Q 013724 267 QHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCS 304 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~l~~lp-~~~-~l~~L~~L~Ls~n~ 304 (437)
..+++|++|++++|. +..++ ..+ .+++|+.|+|++|.
T Consensus 138 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC
T ss_pred cCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCc
Confidence 345555555555555 22332 223 45555555555554
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=4.2e-14 Score=150.31 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=18.1
Q ss_pred cccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCC
Q 013724 267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCS 304 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~ 304 (437)
..+++|++|+|++|.+.+..|..+ .+++|+.|+|++|.
T Consensus 144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 445555555555555222222233 55555555555544
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.53 E-value=2.1e-14 Score=139.24 Aligned_cols=129 Identities=22% Similarity=0.309 Sum_probs=60.2
Q ss_pred ccCceEEEeccCCCCCCCcCc--cC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcc--cChhhcCCCCC
Q 013724 268 HLNTLVVLNLRDCKSLKSLPA--GI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEE--LPSSIECLYKL 341 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~--~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~--lp~~i~~L~~L 341 (437)
.+++|++|++++|. +..++. .+ .+++|++|+|++|.+....|. +..+++|++|+|++|.+.. +|..+..+++|
T Consensus 99 ~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 99 GLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp TCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 44555555555554 333332 22 445555555555544333333 4445555555555555542 44445555555
Q ss_pred CEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724 342 LHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 342 ~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
+.|+|++|...+..|..+..+++|++|++++|...+..+..+..+++|+.|++.++
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 55555555422222444455555555555554433323334444555555554433
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.52 E-value=2.4e-14 Score=151.71 Aligned_cols=177 Identities=15% Similarity=0.089 Sum_probs=119.2
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcC-ccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp-~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.|+.|++++|..... + ..+..+++|+.|++++|.+.+..| ..+ .+++|+.|+|++|.+....|. +..+++|++|
T Consensus 377 ~L~~L~L~~n~l~~~-~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 377 SLRHLDLSFNGAIIM-S--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp CCCEEECCSCSEEEE-C--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred cccEeECCCCccccc-h--hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 456666666654321 1 345567778888888877444444 234 778888888888776666665 7778888888
Q ss_pred EeeCCCCcc--cChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 322 FLNGTAIEE--LPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 322 ~Ls~n~l~~--lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+|++|.+.. +|..++.+++|+.|+|++|...+..|..+..+++|++|++++|...+..|..+..+++|+.|++.+|..
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 888887774 577778888888888888875555566677888888888888777666677788888888888766643
Q ss_pred hhhccccccCCCcc-cccccccCCCCCCc
Q 013724 400 FFVETSAASGDDWK-SAFDAAADGPVKPS 427 (437)
Q Consensus 400 ~~~~~~~~~~~~~~-~l~~~~~s~~~~~~ 427 (437)
. ..+.....+. .++.+..+++.+.+
T Consensus 534 ~---~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 534 E---TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp C---CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred c---ccCHhHhhhcccCcEEEccCCCccc
Confidence 2 2333333343 35666666665553
No 37
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=3e-14 Score=136.18 Aligned_cols=176 Identities=20% Similarity=0.128 Sum_probs=87.7
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcC-ccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp-~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.|+.|++++|...... +..+..+++|++|++++|. +..++ ..+ .+++|++|++++|.+....+. +..+++|++|
T Consensus 53 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (276)
T ss_dssp TCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred CCcEEECCCCcCCccC--HHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence 3455555555332211 1123445556666666555 33333 233 555666666655544433332 5555666666
Q ss_pred EeeCCCCcc--cChhhcCCCCCCEEeccCCCCCCCC-ccccCCCCCCC----EEeeeCCCCCCccchhccCCCCCceeec
Q 013724 322 FLNGTAIEE--LPSSIECLYKLLHLDLEDCKSLKSL-PSGLCKLKSLK----YLTLNGCSILQRLNFDIWSILPLVLTTF 394 (437)
Q Consensus 322 ~Ls~n~l~~--lp~~i~~L~~L~~L~L~~n~~l~~L-P~~l~~L~~L~----~L~Ls~c~~l~~lP~~l~~L~~L~~L~~ 394 (437)
+|++|.+.. +|..++.+++|+.|++++|. ++.+ +..+..+++|+ .|++++|. +..+|.......+|+.|++
T Consensus 130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L 207 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELAL 207 (276)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEEC
T ss_pred ECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCc-ccccCccccCCCcccEEEC
Confidence 666665553 45555556666666666655 3332 23333333333 55555544 2334434334446666666
Q ss_pred ccccchhhccccccCCCcccccccccCCCCCCc
Q 013724 395 IYVYKFFVETSAASGDDWKSAFDAAADGPVKPS 427 (437)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~ 427 (437)
.++... .........++.++.+..+++.+.+
T Consensus 208 ~~n~l~--~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 208 DTNQLK--SVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CSSCCS--CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCcee--ecCHhHhcccccccEEEccCCcccc
Confidence 544322 2222233456677777777776663
No 38
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=4.3e-14 Score=132.31 Aligned_cols=147 Identities=12% Similarity=0.116 Sum_probs=76.4
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeC-CCCCCCCC-C-CCCCCCCCE
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSG-CSKLKRLP-D-ISSAANIEE 320 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~-n~~~~~lp-~-l~~l~~L~~ 320 (437)
++.|++++|......+ ..+..+++|+.|++++|..++.++.. + .+++|++|+|++ |. +..+| . +..+++|++
T Consensus 33 l~~L~l~~n~l~~i~~--~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPS--HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKF 109 (239)
T ss_dssp CCEEEEESCCCSEECT--TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCE
T ss_pred ccEEEEeCCcceEECH--HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCE
Confidence 4455555554332211 12344566666666666434445442 2 566666666665 33 33333 2 555666666
Q ss_pred EEeeCCCCcccChhhcCCCCCC---EEeccCCCCCCCCcc-ccCCCCCCC-EEeeeCCCCCCccchhccCCCCCceeecc
Q 013724 321 MFLNGTAIEELPSSIECLYKLL---HLDLEDCKSLKSLPS-GLCKLKSLK-YLTLNGCSILQRLNFDIWSILPLVLTTFI 395 (437)
Q Consensus 321 L~Ls~n~l~~lp~~i~~L~~L~---~L~L~~n~~l~~LP~-~l~~L~~L~-~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~ 395 (437)
|+|++|.++.+|. +..+++|+ .|++++|..++.+|. .+..+++|+ +|++++|.. ..+|.......+|+.|++.
T Consensus 110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTTTTTCEEEEEECT
T ss_pred EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhhcCCCCCCEEEcC
Confidence 6666666666554 55555555 666666622455543 255566666 666665543 3555443333556666554
Q ss_pred cc
Q 013724 396 YV 397 (437)
Q Consensus 396 ~~ 397 (437)
++
T Consensus 188 ~n 189 (239)
T 2xwt_C 188 KN 189 (239)
T ss_dssp TC
T ss_pred CC
Confidence 44
No 39
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.2e-13 Score=128.96 Aligned_cols=133 Identities=27% Similarity=0.321 Sum_probs=111.5
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCE
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEE 320 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~ 320 (437)
..|+.|+|++|...+..+ ..+..+++|++|+|++|. ++.+|... .+++|++|+|++|.+....+. +..+++|+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEP--GVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccCH--HHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 357889999887654332 456779999999999998 67787654 899999999999976655455 789999999
Q ss_pred EEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccc
Q 013724 321 MFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLN 380 (437)
Q Consensus 321 L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP 380 (437)
|+|++|.|+.+|..+..+++|+.|+|++|. +..+| ..+..+++|+.|+|++|+.....+
T Consensus 117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp EECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred EeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999999999999999999999999999998 66776 458899999999999998765443
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.52 E-value=6.3e-14 Score=150.18 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=128.3
Q ss_pred hhhhhhcccCcccCCCCCCcccc-------ccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CC
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQ-------HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--IS 313 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~-------~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~ 313 (437)
.|+.|++++|...+..+. .+. .+++|+.|++++|. +..+|..+ .+++|+.|+|++|.+. .+|. +.
T Consensus 403 ~L~~L~Ls~N~l~~~~p~--~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~ 478 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGK--NFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLK 478 (636)
T ss_dssp CEEEEECCSSCTTTTTTC--SSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSE
T ss_pred ccCEEECcCCcCCCcchh--hhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhc
Confidence 355666666655443321 122 45688888888887 55777766 6889999999988766 6665 32
Q ss_pred CC-------CCCCEEEeeCCCCcccChhhc--CCCCCCEEeccCCCCCCCCccccCCCCCCCEEeee------CCCCCCc
Q 013724 314 SA-------ANIEEMFLNGTAIEELPSSIE--CLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLN------GCSILQR 378 (437)
Q Consensus 314 ~l-------~~L~~L~Ls~n~l~~lp~~i~--~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls------~c~~l~~ 378 (437)
.+ ++|+.|+|++|.|+.+|..+. .+++|+.|+|++|. +..+|..+..+++|++|+|+ +|...+.
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred cccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCccccc
Confidence 22 289999999999999998887 89999999999988 55589888899999999994 5667788
Q ss_pred cchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCCcc
Q 013724 379 LNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQ 428 (437)
Q Consensus 379 lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~~ 428 (437)
+|..+..+++|+.|++.+|.. ...+.... +.++.+..+++.+.+.
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l---~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDI---RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCC---CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred ChHHHhcCCCCCEEECCCCcC---CccCHhHh--CcCCEEECcCCCCccc
Confidence 999999999999999877665 23333222 6777788777766543
No 41
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=1.1e-13 Score=128.38 Aligned_cols=127 Identities=21% Similarity=0.264 Sum_probs=102.9
Q ss_pred CceEEEeccCCCCCCCcCc-cC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEe
Q 013724 270 NTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLD 345 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~lp~-~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~ 345 (437)
++|+.|++++|. +..++. .+ .+++|++|+|++|.+....|. |..+++|++|+|++|.|+.+|.. +..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 578999999998 666665 44 889999999999877666565 88899999999999999988875 57899999999
Q ss_pred ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724 346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
|++|...+..|..+..+++|++|+|++|...+-.+..+..+++|+.|++.++
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 9999844444677889999999999998765555556888999999988654
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=4.4e-14 Score=137.82 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=97.3
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN 324 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls 324 (437)
.|+.|++++|.... . ..+..+++|+.|++++|. +..++....+++|+.|+|++|.+. .++.+..+++|+.|+|+
T Consensus 86 ~L~~L~L~~n~l~~-~---~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 86 KITELELSGNPLKN-V---SAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIG 159 (308)
T ss_dssp SCCEEECCSCCCSC-C---GGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCCEEECC
T ss_pred CCCEEEccCCcCCC-c---hhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCEEECCCCccC-cCccccCCCCccEEEcc
Confidence 46667777665432 1 135567778888888777 555655227777888888877543 44447777778888888
Q ss_pred CCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 325 ~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+|.++.++. +..+++|+.|++++|. +..+|. +..+++|++|++++|.. ..++ .+..+++|+.|++.++..
T Consensus 160 ~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 160 NAQVSDLTP-LANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQI-SDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTSCC-CBCG-GGTTCTTCCEEEEEEEEE
T ss_pred CCcCCCChh-hcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCCcc-Cccc-cccCCCCCCEEEccCCee
Confidence 887777766 7777788888887777 556654 67777788888877654 3444 367777777777765543
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.52 E-value=1.2e-14 Score=140.95 Aligned_cols=179 Identities=16% Similarity=0.059 Sum_probs=133.4
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCC--CCCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP--DISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp--~l~~l~~L~~L 321 (437)
.|+.|++++|........+..+..+++|++|++++|. +..+|..+ .+++|++|+|++|.+....+ .+..+++|++|
T Consensus 53 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 131 (306)
T 2z66_A 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131 (306)
T ss_dssp TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence 4777888877553221111223457889999999998 66777777 89999999999987655443 38889999999
Q ss_pred EeeCCCCcc-cChhhcCCCCCCEEeccCCCCCC-CCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 322 FLNGTAIEE-LPSSIECLYKLLHLDLEDCKSLK-SLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 322 ~Ls~n~l~~-lp~~i~~L~~L~~L~L~~n~~l~-~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
++++|.+.. .|..+..+++|+.|++++|...+ .+|..+..+++|++|++++|...+..|..+..+++|+.|++.++..
T Consensus 132 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211 (306)
T ss_dssp ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc
Confidence 999999984 45678899999999999998444 4788899999999999999887666688899999999999877653
Q ss_pred hhhccccccCCCcccccccccCCCCCC
Q 013724 400 FFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
.. ........++.++.+..+++.+.
T Consensus 212 ~~--~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 212 FS--LDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp SB--CCSGGGTTCTTCCEEECTTSCCC
T ss_pred Cc--cChhhccCcccCCEeECCCCCCc
Confidence 32 11222334556666666665554
No 44
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=2.4e-14 Score=124.12 Aligned_cols=125 Identities=21% Similarity=0.179 Sum_probs=105.4
Q ss_pred cCceEEEeccCCCCC-CCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcc-cChhhcCCCCCCEEe
Q 013724 269 LNTLVVLNLRDCKSL-KSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEE-LPSSIECLYKLLHLD 345 (437)
Q Consensus 269 l~~L~~L~Ls~n~~l-~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~-lp~~i~~L~~L~~L~ 345 (437)
.++|+.|++++|.+. +.+|..+ .+++|+.|++++|.+... +.+..+++|++|+|++|.++. +|..++.+++|+.|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 478999999999844 4888877 899999999999875544 669999999999999999997 788888899999999
Q ss_pred ccCCCCCCCCc--cccCCCCCCCEEeeeCCCCCCccc---hhccCCCCCceeecc
Q 013724 346 LEDCKSLKSLP--SGLCKLKSLKYLTLNGCSILQRLN---FDIWSILPLVLTTFI 395 (437)
Q Consensus 346 L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~~l~~lP---~~l~~L~~L~~L~~~ 395 (437)
+++|. ++.+| ..++.+++|++|++++|+..+..+ ..+..+++|+.|++.
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99998 66665 788999999999999987544333 368889999998864
No 45
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=4e-14 Score=138.15 Aligned_cols=175 Identities=15% Similarity=0.051 Sum_probs=111.6
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CC-----CCccEEeeeCCCCCCCCCC-CCCCCC
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HL-----EFLKELDLSGCSKLKRLPD-ISSAAN 317 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l-----~~L~~L~Ls~n~~~~~lp~-l~~l~~ 317 (437)
.|+.|++++|...+..+...++..+++|++|++++|. +..+|..+ .+ ++|++|+|++|.+....|. +..+++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 5677778877665544443233677888888888887 44446554 43 7888888888776655544 777888
Q ss_pred CCEEEeeCCCCcc---cChhh--cCCCCCCEEeccCCCCCCCCc---cc-cCCCCCCCEEeeeCCCCCCccc-hhccCCC
Q 013724 318 IEEMFLNGTAIEE---LPSSI--ECLYKLLHLDLEDCKSLKSLP---SG-LCKLKSLKYLTLNGCSILQRLN-FDIWSIL 387 (437)
Q Consensus 318 L~~L~Ls~n~l~~---lp~~i--~~L~~L~~L~L~~n~~l~~LP---~~-l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~ 387 (437)
|++|+|++|.+.. +|..+ +.+++|+.|+|++|. ++.+| .. +..+++|++|++++|...+..| ..+..++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 8888888887652 34444 677888888888777 55333 22 3566778888887776655554 3455677
Q ss_pred CCceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724 388 PLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 388 ~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
+|+.|++.++... ..+.... ..++.+..+++.+.
T Consensus 254 ~L~~L~Ls~N~l~---~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 254 QLNSLNLSFTGLK---QVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp TCCEEECTTSCCS---SCCSSCC--SEEEEEECCSSCCC
T ss_pred CCCEEECCCCccC---hhhhhcc--CCceEEECCCCCCC
Confidence 7777777655433 2222222 45566666655554
No 46
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.51 E-value=1.3e-14 Score=155.55 Aligned_cols=154 Identities=15% Similarity=0.106 Sum_probs=87.1
Q ss_pred ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCC-CCC-CCCC-CCCC------CCCCEEEeeCCCCcccCh--hh
Q 013724 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCS-KLK-RLPD-ISSA------ANIEEMFLNGTAIEELPS--SI 335 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~-~~~-~lp~-l~~l------~~L~~L~Ls~n~l~~lp~--~i 335 (437)
.+++|++|++++|.+.+.+|..+ .+++|++|+|++|. +.+ .+|. ++.+ ++|+.|+|++|.++.+|. .+
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence 56666666666666556666555 56666666666665 443 4554 4443 566666666666666665 56
Q ss_pred cCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCC-CceeecccccchhhccccccCCC--c
Q 013724 336 ECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILP-LVLTTFIYVYKFFVETSAASGDD--W 412 (437)
Q Consensus 336 ~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~-L~~L~~~~~~~~~~~~~~~~~~~--~ 412 (437)
+.+++|+.|++++|...+.+| .++.+++|++|++++|... .+|..+..+++ |+.|++.++... ..+..... .
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~---~lp~~~~~~~l 401 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK---YIPNIFDAKSV 401 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS---SCCSCCCTTCS
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc---ccchhhhhccc
Confidence 666666666666666444666 5566666666666665433 66666666666 666665544422 22222222 2
Q ss_pred ccccccccCCCCCC
Q 013724 413 KSAFDAAADGPVKP 426 (437)
Q Consensus 413 ~~l~~~~~s~~~~~ 426 (437)
..++.+..+.+.+.
T Consensus 402 ~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 402 SVMSAIDFSYNEIG 415 (636)
T ss_dssp SCEEEEECCSSCTT
T ss_pred CccCEEECcCCcCC
Confidence 24555555555443
No 47
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=9.4e-14 Score=134.47 Aligned_cols=122 Identities=24% Similarity=0.311 Sum_probs=53.6
Q ss_pred ccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEecc
Q 013724 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLE 347 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~ 347 (437)
.+++|+.|++++|. +..+|....+++|++|+|++|.+ ..++.+..+++|+.|+|++|.++.+ +.+..+++|+.|+++
T Consensus 88 ~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~i-~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 88 NLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLE 164 (291)
T ss_dssp TCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECC
T ss_pred cCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCcC-CCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEcc
Confidence 34444444444444 33333311444444444444432 2233344444444444444444444 334444555555555
Q ss_pred CCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccc
Q 013724 348 DCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIY 396 (437)
Q Consensus 348 ~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~ 396 (437)
+|. +..++. +..+++|+.|++++|. +..+|. +..+++|+.|++.+
T Consensus 165 ~N~-l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~-l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 165 DNQ-ISDIVP-LAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFS 209 (291)
T ss_dssp SSC-CCCCGG-GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEEEEE
T ss_pred CCc-cccchh-hcCCCccCEEECCCCc-CCCChh-hccCCCCCEEECcC
Confidence 444 333333 4445555555554443 233332 44445555554433
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.50 E-value=1.7e-13 Score=134.37 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=55.4
Q ss_pred cccCceEEEeccCCCCCC--CcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCccc-ChhhcCCCCC
Q 013724 267 QHLNTLVVLNLRDCKSLK--SLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYKL 341 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~l~--~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L 341 (437)
..+++|+.|++++|.+.. ..+..+ .+++|++|++++|.+. .+|. +. ++|+.|+|++|.++.+ |..+..+++|
T Consensus 142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL 218 (330)
T ss_dssp TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 344455555555544211 122222 4455555555554322 2332 21 4455555555555433 3344445555
Q ss_pred CEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724 342 LHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 342 ~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
+.|+|++|...+..+..+..+++|++|++++|. +..+|..+..+++|+.|++.++
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS
T ss_pred CEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC
Confidence 555555544222222234444555555555443 2344444445555555544433
No 49
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=1.6e-13 Score=146.13 Aligned_cols=144 Identities=22% Similarity=0.273 Sum_probs=89.5
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN 324 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls 324 (437)
.|+.|+|++|......+ +..+++|+.|+|++|. +..+|....+++|+.|+|++|.+. .++.+..+++|+.|+|+
T Consensus 66 ~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 66 NVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLG 139 (605)
T ss_dssp TCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSCCC-CCGGGGGCTTCSEEECC
T ss_pred CCCEEEeeCCCCCCChh----hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCCCC-CCccccCCCccCEEECC
Confidence 45566666665432211 4556677777777776 555553226677777777776533 34556667777777777
Q ss_pred CCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 325 ~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+|.|+.+ ..+..|++|+.|+|++|. +..++. +..+++|+.|+|++|.+ ..+| .+..|++|+.|++.+|..
T Consensus 140 ~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~i-~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 140 NNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHI-SDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp SSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CBCG-GGTTCTTCSEEECCSEEE
T ss_pred CCccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCCC-CCCh-HHccCCCCCEEEccCCcC
Confidence 7777766 456677777777777776 444444 66777777777777643 3444 466777777777655543
No 50
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=141.57 Aligned_cols=150 Identities=23% Similarity=0.287 Sum_probs=98.4
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.|+.|+|++|...... +..+..+++|++|+|++|. +..+|... .+++|++|+|++|.+....|. +..+++|+.|
T Consensus 57 ~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 57 HLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCccCEeC--hhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 4666777666443322 2235567777777777776 55566543 677777777777766555554 6777777777
Q ss_pred EeeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724 322 FLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 322 ~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~ 398 (437)
+|++|.+..+ |..+..+++|+.|+|++|. ++.+| ..+.++++|+.|++++|...+..+..+..+.+|+.|++.+|.
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 7777777754 3466777777777777776 44554 346777777777777776555555567777777777776553
No 51
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.49 E-value=2.2e-13 Score=139.12 Aligned_cols=133 Identities=17% Similarity=0.022 Sum_probs=96.3
Q ss_pred CCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEee
Q 013724 293 EFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTL 370 (437)
Q Consensus 293 ~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~L 370 (437)
++|+.|+|++|.+...+|. +..+++|+.|+|++|.+..+ |..++.+++|+.|+|++|...+..|..++.+++|++|+|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 4566667776665555565 77888888888888888865 557888888888888888843444667788888888888
Q ss_pred eCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCCc
Q 013724 371 NGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPS 427 (437)
Q Consensus 371 s~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~ 427 (437)
++|...+..|..+..+++|+.|++.++... .........++.++.+..+++.+.+
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLK--SVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCcccccChhhccccccccEEECCCCccc--cCCHhHhccCCcccEEEccCCCccc
Confidence 888776666788888888888888665432 2222234566777778777776663
No 52
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.49 E-value=1.2e-13 Score=140.94 Aligned_cols=180 Identities=19% Similarity=0.094 Sum_probs=125.4
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-C--------------------------------
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-H-------------------------------- 291 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~-------------------------------- 291 (437)
.|+.|++++|...+..+ ..++..+++|++|++++|.+.+..|..+ .
T Consensus 130 ~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQP-ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208 (455)
T ss_dssp TCCEEECCSSBCCSCCC-CGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred cCCEEECCCCccCccCc-ccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence 56777787776543322 2346678888888888887444434332 2
Q ss_pred --CCCccEEeeeCCCCCCCCCC--------------------------------------CC--CCCCCCEEEeeCCCCc
Q 013724 292 --LEFLKELDLSGCSKLKRLPD--------------------------------------IS--SAANIEEMFLNGTAIE 329 (437)
Q Consensus 292 --l~~L~~L~Ls~n~~~~~lp~--------------------------------------l~--~l~~L~~L~Ls~n~l~ 329 (437)
+++|+.|+|++|.+.+..|. +. ..++|+.|+|++|.+.
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 288 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc
Confidence 24567777776654321110 11 1257888888888888
Q ss_pred c-cChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhcccccc
Q 013724 330 E-LPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAAS 408 (437)
Q Consensus 330 ~-lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~ 408 (437)
. +|..++.+++|+.|+|++|...+..|..+..+++|++|+|++|...+..|..+..+++|+.|++.++.. ....+..
T Consensus 289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~ 366 (455)
T 3v47_A 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI--RALGDQS 366 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC--CEECTTT
T ss_pred ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc--cccChhh
Confidence 4 466789999999999999995555577889999999999999887666688899999999999877644 2333445
Q ss_pred CCCcccccccccCCCCCCc
Q 013724 409 GDDWKSAFDAAADGPVKPS 427 (437)
Q Consensus 409 ~~~~~~l~~~~~s~~~~~~ 427 (437)
...++.++.+..+++.+..
T Consensus 367 ~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp TTTCTTCCEEECCSSCCSC
T ss_pred ccccccccEEECCCCcccc
Confidence 5667788888888877663
No 53
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=1.7e-14 Score=159.41 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=122.8
Q ss_pred hhhhhhcccCcccCC------C---------CCCcccc--ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCC-C
Q 013724 245 ALKEKIISACNIFTK------T---------PNPSFSQ--HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCS-K 305 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~------~---------~~~~~~~--~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~-~ 305 (437)
.|+.|+|++|...+. . ..|..++ .+++|+.|+|++|.+.+.+|..+ .+++|+.|+|++|. +
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 567788888876651 0 0334444 89999999999998888999888 89999999999987 5
Q ss_pred CC-CCCC-CC-------CCCCCCEEEeeCCCCcccCh--hhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCC
Q 013724 306 LK-RLPD-IS-------SAANIEEMFLNGTAIEELPS--SIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCS 374 (437)
Q Consensus 306 ~~-~lp~-l~-------~l~~L~~L~Ls~n~l~~lp~--~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~ 374 (437)
.+ .+|. ++ .+++|+.|+|++|.++.+|. .++++++|+.|+|++|. +..+| .++.+++|+.|+|++|.
T Consensus 529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSC
T ss_pred ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCc
Confidence 54 5664 33 45599999999999999998 89999999999999988 55888 78899999999999887
Q ss_pred CCCccchhccCCCC-Cceeecccccc
Q 013724 375 ILQRLNFDIWSILP-LVLTTFIYVYK 399 (437)
Q Consensus 375 ~l~~lP~~l~~L~~-L~~L~~~~~~~ 399 (437)
.. .+|..+..+++ |+.|++.+|..
T Consensus 607 l~-~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 607 IE-EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred cc-cchHHHhhccccCCEEECcCCCC
Confidence 55 88988888888 99998877653
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=1.1e-13 Score=132.18 Aligned_cols=126 Identities=25% Similarity=0.277 Sum_probs=53.6
Q ss_pred cccCceEEEeccCCCCCCCcCc-cC-CCCCccEEeeeCCCCCC-CCCC-CCCCCCCCEEEeeCCCCcccC-hhhcCCCCC
Q 013724 267 QHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLK-RLPD-ISSAANIEEMFLNGTAIEELP-SSIECLYKL 341 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~l~~lp~-~~-~l~~L~~L~Ls~n~~~~-~lp~-l~~l~~L~~L~Ls~n~l~~lp-~~i~~L~~L 341 (437)
..+++|++|++++|. +..++. .+ .+++|++|+|++|.+.. .+|. +..+++|+.|+|++|.++.++ ..+..+.+|
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 334455555555544 222322 22 44455555555444332 1233 444455555555555544433 233333333
Q ss_pred C----EEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccch-hccCCCCCceeecc
Q 013724 342 L----HLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNF-DIWSILPLVLTTFI 395 (437)
Q Consensus 342 ~----~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~-~l~~L~~L~~L~~~ 395 (437)
+ .|++++|. +..+|..+....+|+.|++++|.. ..+|. .+..+++|+.|++.
T Consensus 176 ~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 176 PLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp TTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSCC-SCCCTTTTTTCCSCCEEECC
T ss_pred cccceeeecCCCc-ccccCccccCCCcccEEECCCCce-eecCHhHhcccccccEEEcc
Confidence 3 44455444 333433333333455555554432 22332 23444455554443
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.49 E-value=2.9e-14 Score=151.09 Aligned_cols=179 Identities=15% Similarity=0.006 Sum_probs=135.6
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCC--CCCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP--DISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp--~l~~l~~L~~L 321 (437)
.|+.|++++|...+....+..+..+++|+.|++++|. +..+|..+ .+++|+.|+|++|.+.+..| .+..+++|+.|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 3555566655443322223345567888888888887 66677666 88899999999988777666 38889999999
Q ss_pred EeeCCCCcc-cChhhcCCCCCCEEeccCCCCCC-CCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 322 FLNGTAIEE-LPSSIECLYKLLHLDLEDCKSLK-SLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 322 ~Ls~n~l~~-lp~~i~~L~~L~~L~L~~n~~l~-~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
++++|.+.. +|..++.+++|+.|++++|...+ .+|..++.+++|++|++++|...+..|..+..+++|+.|++.+|..
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 999999884 57778899999999999998555 3788889999999999999988777788899999999999876643
Q ss_pred hhhccccccCCCcccccccccCCCCCC
Q 013724 400 FFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
. ...+.....++.++.+..+++.+.
T Consensus 510 ~--~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 510 L--FLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp S--CEEGGGTTTCTTCCEEECTTSCCC
T ss_pred C--CcCHHHccCCCcCCEEECCCCcCc
Confidence 3 333455566777888888877765
No 56
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=2.9e-13 Score=125.56 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=102.4
Q ss_pred CceEEEeccCCCCCCCc-Ccc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEE
Q 013724 270 NTLVVLNLRDCKSLKSL-PAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHL 344 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~l-p~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L 344 (437)
..++.|+|++|. +..+ |.. + .+++|++|+|++|.+....+. |..+++|++|+|++|.|+.++. .+..+++|+.|
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 456899999998 5555 433 3 889999999999876655554 8889999999999999997765 47889999999
Q ss_pred eccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724 345 DLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 345 ~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
+|++|...+..|..+..+++|++|+|++|...+..|..+..+++|+.|++.++
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 99999855555777889999999999998776666888899999999988654
No 57
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=2.9e-13 Score=149.56 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=39.9
Q ss_pred CCCCCEEEeeCCCCcccChhhcC--------CCCCCEEeccCCCCCCCCccccC--CCCCCCEEeeeCCCCCCccchhcc
Q 013724 315 AANIEEMFLNGTAIEELPSSIEC--------LYKLLHLDLEDCKSLKSLPSGLC--KLKSLKYLTLNGCSILQRLNFDIW 384 (437)
Q Consensus 315 l~~L~~L~Ls~n~l~~lp~~i~~--------L~~L~~L~L~~n~~l~~LP~~l~--~L~~L~~L~Ls~c~~l~~lP~~l~ 384 (437)
+++|+.|+|++|.|..+|..+.. |++|+.|+|++|. +..+|..+. .+++|+.|+|++|...+ +|..+.
T Consensus 696 l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~ 773 (876)
T 4ecn_A 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL 773 (876)
T ss_dssp TCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred CCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCc-cchhhh
Confidence 44444444444444444443322 1255555555554 345555554 55555555555554333 555555
Q ss_pred CCCCCceeeccc
Q 013724 385 SILPLVLTTFIY 396 (437)
Q Consensus 385 ~L~~L~~L~~~~ 396 (437)
.+++|+.|++.+
T Consensus 774 ~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 774 NSSQLKAFGIRH 785 (876)
T ss_dssp GCTTCCEEECCC
T ss_pred cCCCCCEEECCC
Confidence 555555555544
No 58
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=6.4e-13 Score=121.59 Aligned_cols=126 Identities=25% Similarity=0.257 Sum_probs=77.5
Q ss_pred CceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEe
Q 013724 270 NTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLD 345 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~ 345 (437)
++|++|++++|. +..++... .+++|++|+|++|.+....+. +..+++|++|+|++|.|+.+|.. +..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 466777777776 44455433 667777777777654433333 56677777777777777766543 46677777777
Q ss_pred ccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724 346 LEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 346 L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
|++|. +..+|. .+..+++|++|++++|...+..+..+..+++|+.|++.++
T Consensus 107 L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 107 LNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 77766 444443 3566777777777776544333333666777777766544
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.48 E-value=2.7e-14 Score=149.80 Aligned_cols=157 Identities=17% Similarity=0.081 Sum_probs=86.6
Q ss_pred cccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCC--CCCCCCCCCEEEeeCCCCcc-cChhhcCCCCCC
Q 013724 267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP--DISSAANIEEMFLNGTAIEE-LPSSIECLYKLL 342 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp--~l~~l~~L~~L~Ls~n~l~~-lp~~i~~L~~L~ 342 (437)
..+++|+.|++++|. +..+|..+ .+++|+.|++++|.+....| .+..+++|++|+|++|.+.. .|..+..+++|+
T Consensus 370 ~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 370 FGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp HTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred cccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 345555555555555 33344334 55666666666655444433 25566666666666666653 344556666666
Q ss_pred EEeccCCCCC-CCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccC
Q 013724 343 HLDLEDCKSL-KSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAAD 421 (437)
Q Consensus 343 ~L~L~~n~~l-~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s 421 (437)
.|+|++|... +.+|..+..+++|++|++++|...+..|..+..+++|+.|++.+|... ...+.....++.++.+..+
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK--SVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECC
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC--CCCHHHhhcccCCcEEEec
Confidence 6666666633 345666666666666666666555545666666666666666544221 1222233445555566655
Q ss_pred CCCCC
Q 013724 422 GPVKP 426 (437)
Q Consensus 422 ~~~~~ 426 (437)
++.+.
T Consensus 527 ~N~~~ 531 (570)
T 2z63_A 527 TNPWD 531 (570)
T ss_dssp SSCBC
T ss_pred CCccc
Confidence 55554
No 60
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.47 E-value=2.7e-13 Score=139.61 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=94.9
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF 322 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~ 322 (437)
.|+.|+|++|.... .+ +..+..+++|++|+|++|.+.+..|..+ .+++|+.|+|++|.+....|. +..+++|+.|+
T Consensus 81 ~L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 81 NLRTLGLRSNRLKL-IP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp TCCEEECCSSCCCS-CC-TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred cCCEEECCCCcCCc-cC-cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 35666666654332 22 1234556677777777766333333344 666677777766655444443 66666666666
Q ss_pred eeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccch--------------------
Q 013724 323 LNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNF-------------------- 381 (437)
Q Consensus 323 Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~-------------------- 381 (437)
|++|.++.+|. .+..+++|+.|+|++|...+..+..+..+++|+.|++++|+.++.+|.
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 66666665553 355566666666666553222223445555555555555444444433
Q ss_pred ----hccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724 382 ----DIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 382 ----~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
.+..+++|+.|++.++... .........+..++.+..+++.+.
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPIS--TIEGSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCC--EECTTSCTTCTTCCEEECCSSCCS
T ss_pred cCHHHhcCccccCeeECCCCcCC--ccChhhccccccCCEEECCCCccc
Confidence 4566666666666544322 222223344556666666555443
No 61
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=7.7e-14 Score=135.95 Aligned_cols=152 Identities=14% Similarity=0.009 Sum_probs=93.3
Q ss_pred hhhhhhcccCcccCCCCCCccc-cccCceEEEeccCCCCCCCcC----ccC-CCCCccEEeeeCCCCCCCCCC-CCCCCC
Q 013724 245 ALKEKIISACNIFTKTPNPSFS-QHLNTLVVLNLRDCKSLKSLP----AGI-HLEFLKELDLSGCSKLKRLPD-ISSAAN 317 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~~l~~lp----~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~ 317 (437)
.|++|++++|...+..+. .++ ..+++|++|++++|.+.+..+ ..+ .+++|++|+|++|.+....|. +..+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 477788888766544433 222 567777777777777443333 111 567777777777766555544 667777
Q ss_pred CCEEEeeCCCCcc---cCh--hhcCCCCCCEEeccCCCCCCCCccc----cCCCCCCCEEeeeCCCCCCccchhccCC--
Q 013724 318 IEEMFLNGTAIEE---LPS--SIECLYKLLHLDLEDCKSLKSLPSG----LCKLKSLKYLTLNGCSILQRLNFDIWSI-- 386 (437)
Q Consensus 318 L~~L~Ls~n~l~~---lp~--~i~~L~~L~~L~L~~n~~l~~LP~~----l~~L~~L~~L~Ls~c~~l~~lP~~l~~L-- 386 (437)
|++|+|++|.+.. ++. .++.+++|++|+|++|. ++.+|.. +..+++|++|+|++|...+.+|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 7777777777652 322 23566777777777766 4554442 3566677777777766555556655555
Q ss_pred -CCCceeeccccc
Q 013724 387 -LPLVLTTFIYVY 398 (437)
Q Consensus 387 -~~L~~L~~~~~~ 398 (437)
++|+.|++.++.
T Consensus 250 ~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 250 SSALNSLNLSFAG 262 (310)
T ss_dssp CTTCCCEECCSSC
T ss_pred cCcCCEEECCCCC
Confidence 466666665443
No 62
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=9.4e-14 Score=124.08 Aligned_cols=130 Identities=20% Similarity=0.213 Sum_probs=110.5
Q ss_pred cccCceEEEeccCCCCCCCcCccCCC-CCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhh-cCCCCCCEE
Q 013724 267 QHLNTLVVLNLRDCKSLKSLPAGIHL-EFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHL 344 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~l~~lp~~~~l-~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i-~~L~~L~~L 344 (437)
..+.+|+.|++++|. +..+|....+ ++|++|+|++|.+.. ++.+..+++|++|+|++|.|+.+|+.+ ..+++|+.|
T Consensus 16 ~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCCCCc-ccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 457899999999998 6677654444 499999999987554 467999999999999999999998765 899999999
Q ss_pred eccCCCCCCCCcc--ccCCCCCCCEEeeeCCCCCCccchh----ccCCCCCceeecccccch
Q 013724 345 DLEDCKSLKSLPS--GLCKLKSLKYLTLNGCSILQRLNFD----IWSILPLVLTTFIYVYKF 400 (437)
Q Consensus 345 ~L~~n~~l~~LP~--~l~~L~~L~~L~Ls~c~~l~~lP~~----l~~L~~L~~L~~~~~~~~ 400 (437)
+|++|. ++.+|. .+..+++|++|++++|+. ..+|.. +..+++|+.|++..+...
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999998 788887 789999999999999875 467764 899999999998766544
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.47 E-value=5.2e-14 Score=139.47 Aligned_cols=147 Identities=18% Similarity=0.121 Sum_probs=69.8
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcC-ccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF 322 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp-~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~ 322 (437)
|+.|++++|..... + +..+..+++|+.|++++|. ++.++ ..+ .+++|++|+|++|.+....+. +.++++|++|+
T Consensus 54 L~~L~l~~n~i~~~-~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 54 VKSLDLSNNRITYI-S-NSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CCEEECTTSCCCEE-C-TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred CcEEECCCCcCccc-C-HHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 44455555443221 1 1123445555555555554 33332 223 555555555555543322222 45555555555
Q ss_pred eeCCCCcccCh--hhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecc
Q 013724 323 LNGTAIEELPS--SIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFI 395 (437)
Q Consensus 323 Ls~n~l~~lp~--~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~ 395 (437)
|++|.++.+|. .+..+++|+.|++++|..++.++ ..+..+++|++|++++|...+..|..+..+++|+.|++.
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 55555555544 44555555555555553344332 344555555555555554444445555555555555443
No 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.47 E-value=3.7e-13 Score=131.97 Aligned_cols=133 Identities=16% Similarity=0.015 Sum_probs=82.0
Q ss_pred CCCCccEEeeeCCCCCC--CCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCE
Q 013724 291 HLEFLKELDLSGCSKLK--RLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKY 367 (437)
Q Consensus 291 ~l~~L~~L~Ls~n~~~~--~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~ 367 (437)
.+++|+.|++++|.+.. ..+. +..+++|++|++++|.++.+|..+. ++|+.|++++|...+..|..+..+++|++
T Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAK 220 (330)
T ss_dssp TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 44555555555544321 2222 5555666666666666665555443 56666777766633334566778888888
Q ss_pred EeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCCcc
Q 013724 368 LTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQ 428 (437)
Q Consensus 368 L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~~ 428 (437)
|++++|...+..+..+..+++|+.|++.++... ..+.....++.++.+..+++.+...
T Consensus 221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred EECCCCcCceeChhhccCCCCCCEEECCCCcCc---cCChhhccCCCcCEEECCCCcCCcc
Confidence 888887655555557777888888887666433 3344455667778888877777633
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=4.2e-13 Score=142.58 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=54.3
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.|+.|+|++|...+.. +..++.+++|++|+|++|. +..+|..+ .+++|++|+|++|.+.+..|. +..+++|+.|
T Consensus 100 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLP--PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCCCCC--HHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 4666777666543322 2345567777777777776 55666553 677777777777766555554 7777777777
Q ss_pred EeeCCCCccc
Q 013724 322 FLNGTAIEEL 331 (437)
Q Consensus 322 ~Ls~n~l~~l 331 (437)
+|++|.++.+
T Consensus 177 ~L~~N~l~~~ 186 (597)
T 3oja_B 177 QLSSNRLTHV 186 (597)
T ss_dssp ECTTSCCSBC
T ss_pred ECcCCCCCCc
Confidence 7777776644
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.46 E-value=6.2e-13 Score=128.66 Aligned_cols=176 Identities=21% Similarity=0.129 Sum_probs=136.5
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF 322 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~ 322 (437)
..++.|++++|...... +..+..+++|+.|+|++|. ++.++....+++|++|+|++|.+. .+|. +..+++|++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFS--LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEE--GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccC--HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 35778888887654322 2346678999999999998 667766558899999999998654 6676 88899999999
Q ss_pred eeCCCCcccC-hhhcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccchh-ccCCCCCceeecccccc
Q 013724 323 LNGTAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFD-IWSILPLVLTTFIYVYK 399 (437)
Q Consensus 323 Ls~n~l~~lp-~~i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~-l~~L~~L~~L~~~~~~~ 399 (437)
|++|.|+.+| ..+..+++|+.|+|++|. ++.+|.. +..+++|+.|+|++|. +..+|.. +..+++|+.|++.++..
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcC
Confidence 9999999887 468999999999999998 6666654 6889999999999976 4566654 57899999999866544
Q ss_pred hhhccccccCCCcccccccccCCCCCCcc
Q 013724 400 FFVETSAASGDDWKSAFDAAADGPVKPSQ 428 (437)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~~~ 428 (437)
. ..+........++.+..+++.+.|.
T Consensus 185 ~---~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 185 Y---TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp C---CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred C---ccChhhcccccCCeEEeCCCCccCc
Confidence 3 3444444556788888888877653
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.46 E-value=4.7e-14 Score=147.59 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=116.3
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcC-ccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp-~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.|+.|++++|...... +..+..+++|++|++++|. +..++ ..+ .+++|++|+|++|.+....|. ++++++|++|
T Consensus 27 ~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 27 AMKSLDLSFNKITYIG--HGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TCCEEECCSSCCCEEC--SSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CccEEECcCCccCccC--hhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 5777888887654332 2345678889999999888 44444 455 888899999998876666665 8888899999
Q ss_pred EeeCCCCcc--cChhhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724 322 FLNGTAIEE--LPSSIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 322 ~Ls~n~l~~--lp~~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~ 398 (437)
+|++|.++. +|..++.+++|+.|++++|..++.+| ..+.++++|++|++++|...+.+|..++.+++|+.|++..+.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999888884 46778888899999998888777776 468888889999998888777788888888888888765544
No 68
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=4.2e-13 Score=124.53 Aligned_cols=152 Identities=14% Similarity=0.070 Sum_probs=123.6
Q ss_pred EEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCC
Q 013724 273 VVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDC 349 (437)
Q Consensus 273 ~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n 349 (437)
+.+++++|. ++.+|..+ ...++.|+|++|.+....|. +..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|
T Consensus 14 ~~l~~s~n~-l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSC-CSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCC-cccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 489999998 78888765 34678999999987665453 7899999999999999998876 7999999999999999
Q ss_pred CCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCCcc
Q 013724 350 KSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQ 428 (437)
Q Consensus 350 ~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~~ 428 (437)
...+..|..+..+++|++|+|++|.+.+..|..+..+++|+.|++.++.. ....+.....+..++.+..+++.+.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI--TTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC--CCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC--CEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 94444445689999999999999987777788999999999999866543 333345566778888888888877643
No 69
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.46 E-value=7.2e-13 Score=130.47 Aligned_cols=145 Identities=19% Similarity=0.308 Sum_probs=97.9
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFL 323 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L 323 (437)
..|+.+++.++..... + .+..+++|++|++++|. +..++....+++|++|+|++|. +..+|.+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~~-~---~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI-Q---GIEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCCC-T---TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccccc-h---hhhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEEC
Confidence 3566677777654322 1 25567788888888876 5566652277888888888775 344566777888888888
Q ss_pred eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~ 398 (437)
++|.+..++. +..+++|+.|++++|..+..++. +..+++|++|++++|... .++. +..+++|+.|++.+|.
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSC
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCc
Confidence 8888877765 77778888888887765555544 677777777777776533 3332 6666777777765554
No 70
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.46 E-value=6.2e-13 Score=133.41 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=42.3
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF 322 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~ 322 (437)
|+.|++++|...... +..+..+++|++|++++|. ++.+|..+ .+++|++|+|++|.+....|. +..+++|++|+
T Consensus 95 L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 95 IQKLYMGFNAIRYLP--PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp CCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred cCEEECCCCCCCcCC--HHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 444555554432211 1234455566666666665 44555443 556666666666554443343 55566666666
Q ss_pred eeCCCCcc
Q 013724 323 LNGTAIEE 330 (437)
Q Consensus 323 Ls~n~l~~ 330 (437)
|++|.++.
T Consensus 172 l~~n~l~~ 179 (390)
T 3o6n_A 172 LSSNRLTH 179 (390)
T ss_dssp CCSSCCSB
T ss_pred CCCCcCCc
Confidence 66655543
No 71
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=3e-13 Score=130.91 Aligned_cols=169 Identities=18% Similarity=0.095 Sum_probs=126.8
Q ss_pred HHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEE
Q 013724 243 RNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322 (437)
Q Consensus 243 ~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~ 322 (437)
...|+.|++++|..... + .+..+++|+.|++++|. +..++....+++|++|+|++|.+ ..+|.+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~---~~~~l~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q---GIQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T---TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h---hHhcCCCCCEEEccCCc-cCCCcccccCCCCCEEECCCCcC-CCChhhccCCCCCEEE
Confidence 34677888888755432 2 25678999999999998 66666622899999999999864 4567789999999999
Q ss_pred eeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhh
Q 013724 323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFV 402 (437)
Q Consensus 323 Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~ 402 (437)
|++|.++.+ +.+..+++|+.|++++|. ++.+ ..+..+++|++|++++|... .++. +..+++|+.|++.++.....
T Consensus 119 L~~n~i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 119 LEHNGISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp CTTSCCCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCcCCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccc-cchh-hcCCCccCEEECCCCcCCCC
Confidence 999999987 468889999999999988 6666 56889999999999998654 4544 88999999999877644322
Q ss_pred ccccccCCCcccccccccCCCCCC
Q 013724 403 ETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 403 ~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
. ....+++++.+..+++.+.
T Consensus 194 ~----~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 194 R----ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp G----GGTTCTTCSEEEEEEEEEE
T ss_pred h----hhccCCCCCEEECcCCccc
Confidence 1 2344556666665555443
No 72
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.3e-13 Score=121.98 Aligned_cols=133 Identities=23% Similarity=0.307 Sum_probs=110.5
Q ss_pred HhhhhhhcccCccc-CCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCE
Q 013724 244 NALKEKIISACNIF-TKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEE 320 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~-~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~ 320 (437)
..|+.|++++|... +.. +..+..+++|+.|++++|. +..+ ..+ .+++|++|+|++|.+...+|. +..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i--~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKI--EGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBC--SSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhH--HHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 46788999998764 233 3446789999999999998 6666 445 999999999999987776777 566999999
Q ss_pred EEeeCCCCcccC--hhhcCCCCCCEEeccCCCCCCCCcc----ccCCCCCCCEEeeeCCCCCCccchh
Q 013724 321 MFLNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSLPS----GLCKLKSLKYLTLNGCSILQRLNFD 382 (437)
Q Consensus 321 L~Ls~n~l~~lp--~~i~~L~~L~~L~L~~n~~l~~LP~----~l~~L~~L~~L~Ls~c~~l~~lP~~ 382 (437)
|+|++|.|+.+| ..+..+++|+.|++++|. +..+|. .+..+++|++|++++|. ..++|..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 999999999876 789999999999999998 667776 78999999999999986 4556643
No 73
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.46 E-value=3.7e-13 Score=142.54 Aligned_cols=148 Identities=20% Similarity=0.156 Sum_probs=70.2
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L 321 (437)
.|+.|++++|... .. |..+..+++|++|++++|.+.+..|..+ .+++|+.|++++|.+...+|. +..+++|++|
T Consensus 279 ~L~~L~l~~n~l~-~l--p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 279 GLQELDLTATHLS-EL--PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TCSEEECTTSCCS-CC--CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred CCCEEeccCCccC-CC--ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 3555666655433 11 2234455666666666665222223333 555555555555554444443 5555555555
Q ss_pred EeeCCCCccc---ChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccch-hccCCCCCceeecc
Q 013724 322 FLNGTAIEEL---PSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNF-DIWSILPLVLTTFI 395 (437)
Q Consensus 322 ~Ls~n~l~~l---p~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~-~l~~L~~L~~L~~~ 395 (437)
++++|.+..+ |..++.+++|+.|++++|...+..|..+..+++|++|++++|...+..|. .+..+++|+.|++.
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 5555555533 33455555555555555543333334444444444444444443333222 23444444444443
No 74
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=2.5e-13 Score=129.63 Aligned_cols=144 Identities=23% Similarity=0.224 Sum_probs=112.5
Q ss_pred HHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEE
Q 013724 243 RNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEM 321 (437)
Q Consensus 243 ~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L 321 (437)
...|+.|++++|.... .+ .+..+++|+.|++++|. +..++. + .+++|+.|+|++|.+ ..+|.+.. ++|+.|
T Consensus 40 l~~L~~L~l~~n~i~~-l~---~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~l-~~l~~~~~-~~L~~L 111 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS-LA---GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNRL-KNLNGIPS-ACLSRL 111 (263)
T ss_dssp HTTCSEEECTTSCCCC-CT---TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSCC-SCCTTCCC-SSCCEE
T ss_pred cCcCcEEECcCCCccc-ch---HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCcc-CCcCcccc-CcccEE
Confidence 3467778888875432 22 35678899999999998 666776 5 889999999999864 44666555 889999
Q ss_pred EeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 322 ~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+|++|.|+.++ .+..+++|+.|+|++|. ++.+| .+..+++|+.|++++|...+ + ..+..+++|+.|++.++..
T Consensus 112 ~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~-~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 112 FLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITN-T-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCB-C-TTSTTCCCCCEEEEEEEEE
T ss_pred EccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcc-h-HHhccCCCCCEEeCCCCcc
Confidence 99999999875 58889999999999988 67776 68889999999999977544 4 5788889999998866543
No 75
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.45 E-value=8.3e-13 Score=136.01 Aligned_cols=142 Identities=15% Similarity=0.031 Sum_probs=65.5
Q ss_pred ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEec
Q 013724 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL 346 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L 346 (437)
.+++|++|++++|. ++.++ + .+++|++|+|++|.+.. +| ++.+++|++|++++|.++.++ ++.+++|+.|++
T Consensus 83 ~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l 155 (457)
T 3bz5_A 83 QNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDC 155 (457)
T ss_dssp TCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccceec--cccCCcCCEEEC
Confidence 34444445554444 33332 2 44445555555443322 22 444455555555555554442 444555555555
Q ss_pred cCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724 347 EDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 347 ~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
++|..++.+ .++.+++|++|++++|.. ..+| +..+++|+.|++.++..... ....++.++.+..+++.+.
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~~l~--l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCC-CCCC--CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCS
T ss_pred CCCCccccc--ccccCCcCCEEECCCCcc-ceec--cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCccc
Confidence 555444444 244555555555555432 2344 45555555555544332211 1233445555555555444
No 76
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.45 E-value=3.2e-13 Score=133.79 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=123.1
Q ss_pred CceEEEeccCCCCCCCcCc-cC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEe
Q 013724 270 NTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLD 345 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~lp~-~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~ 345 (437)
++|++|++++|. ++.+|. .+ .+++|++|+|++|.+....|. +.++++|++|+|++|.|+.+|.. ++.+++|++|+
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 589999999998 667776 45 999999999999977666565 99999999999999999999876 89999999999
Q ss_pred ccCCCCCCCCcc--ccCCCCCCCEEeeeCCCCCCcc-chhccCCCCCceeecccccchhhccccccCCCcccccccccCC
Q 013724 346 LEDCKSLKSLPS--GLCKLKSLKYLTLNGCSILQRL-NFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADG 422 (437)
Q Consensus 346 L~~n~~l~~LP~--~l~~L~~L~~L~Ls~c~~l~~l-P~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~ 422 (437)
+++|. ++.+|. .+..+++|++|++++|+.++.+ |..+..+++|+.|++.++... ...+.....++.++.+..++
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ--SYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC--EECTTTTTTCSEEEEEEEEC
T ss_pred CCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC--ccCHHHHhccccCCeecCCC
Confidence 99998 778886 6899999999999999767776 467899999999998766432 22234444555666665555
Q ss_pred CCC
Q 013724 423 PVK 425 (437)
Q Consensus 423 ~~~ 425 (437)
+.+
T Consensus 208 n~l 210 (353)
T 2z80_A 208 KQH 210 (353)
T ss_dssp SCS
T ss_pred Ccc
Confidence 543
No 77
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=8.6e-13 Score=122.39 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=123.6
Q ss_pred EEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEEeccCCC
Q 013724 273 VVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCK 350 (437)
Q Consensus 273 ~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~ 350 (437)
+.++++++. ++.+|..+. ++|+.|+|++|.+....+. +..+++|+.|+|++|.|+.+ |..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~-l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCC-cCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578888887 888887653 7899999999876655554 89999999999999999977 7789999999999999998
Q ss_pred CCCCCccc-cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCCcc
Q 013724 351 SLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQ 428 (437)
Q Consensus 351 ~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~~ 428 (437)
+..+|.. +..+++|++|+|++|...+..|..+..+++|+.|++.++... ...+.....+..++.+..+++.+.+.
T Consensus 92 -l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 -ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ--TIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred -CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC--EECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 7778765 688999999999999877777888999999999998665433 22233455677888888888877643
No 78
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=7.2e-13 Score=121.27 Aligned_cols=139 Identities=25% Similarity=0.305 Sum_probs=109.5
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.|+.|++++|.... .+ +..+..+++|++|++++|. +..+|... .+++|++|+|++|.+....+. +..+++|++|
T Consensus 29 ~l~~L~l~~n~l~~-~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLDLETNSLKS-LP-NGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEECCSSCCCC-CC-TTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCccCc-CC-hhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 46778888886643 22 2346778999999999998 66777654 899999999999876654444 7899999999
Q ss_pred EeeCCCCcccChh-hcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724 322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF 394 (437)
Q Consensus 322 ~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~ 394 (437)
+|++|.|+.+|.. +..+++|+.|+|++|. ++.+|.. +..+++|++|++++|+..+. ++.|+.|++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~ 172 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSE 172 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHH
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHH
Confidence 9999999988765 7899999999999998 5566654 78999999999999876543 345555554
No 79
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.44 E-value=5.1e-13 Score=141.23 Aligned_cols=125 Identities=23% Similarity=0.213 Sum_probs=76.7
Q ss_pred ceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEec
Q 013724 271 TLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDL 346 (437)
Q Consensus 271 ~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L 346 (437)
++++|+|++|. ++.+|.. + .+++|++|+|++|.+....|. |.++++|++|+|++|+|+.+|+ .|.+|++|++|+|
T Consensus 53 ~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 56667777666 5555543 3 666777777776654433333 6666677777777776666654 3566677777777
Q ss_pred cCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCC-ccchhccCCCCCceeecccc
Q 013724 347 EDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQ-RLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 347 ~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~-~lP~~l~~L~~L~~L~~~~~ 397 (437)
++|. +..+|. .++++++|++|++++|.... .+|..++.+++|+.|++.++
T Consensus 132 s~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 132 VETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 7666 444443 36666677777776665433 35566666666666666543
No 80
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.44 E-value=2.4e-13 Score=144.06 Aligned_cols=158 Identities=13% Similarity=0.025 Sum_probs=87.7
Q ss_pred ccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcc--cC--hhhcCC
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEE--LP--SSIECL 338 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~--lp--~~i~~L 338 (437)
+..+++|+.|++++|.+.+..|.. + .+++|+.|+|++|.+....|. +..+++|++|+|++|.+.. +| ..+..+
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 334555555555555533333332 2 556666666666655444444 5566666666666666653 22 345666
Q ss_pred CCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCccccccc
Q 013724 339 YKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDA 418 (437)
Q Consensus 339 ~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (437)
++|+.|+|++|...+..|..+..+++|++|+|++|...+..|..+.+++.| .|++.++... ...+.....++.++.+
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~--~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS--IILPSLLPILSQQRTI 552 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC--CCCGGGHHHHHTSSEE
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc--ccCHhhcccCCCCCEE
Confidence 666666666666444445566666666666666666666666666666666 6665444322 1222222334555666
Q ss_pred ccCCCCCC
Q 013724 419 AADGPVKP 426 (437)
Q Consensus 419 ~~s~~~~~ 426 (437)
..+++.+.
T Consensus 553 ~l~~N~~~ 560 (606)
T 3t6q_A 553 NLRQNPLD 560 (606)
T ss_dssp ECTTCCEE
T ss_pred eCCCCCcc
Confidence 66666554
No 81
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.44 E-value=2.9e-13 Score=132.94 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=86.2
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCC--CCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSL--KSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEE 320 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l--~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~ 320 (437)
.|+.|++++|.... .+ +..+..+++|+.|++++|.+. +..|..+ .+ +|+.|++++|.+. .+|. +. ++|+.
T Consensus 124 ~L~~L~l~~n~i~~-~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~ 197 (332)
T 2ft3_A 124 SLVELRIHDNRIRK-VP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNE 197 (332)
T ss_dssp TCCEEECCSSCCCC-CC-SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSC
T ss_pred cCCEEECCCCccCc-cC-HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCE
Confidence 56677777765432 22 233556777788888777632 1333333 44 6777777766533 3443 22 56666
Q ss_pred EEeeCCCCcccC-hhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724 321 MFLNGTAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 321 L~Ls~n~l~~lp-~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~ 398 (437)
|+|++|.++.++ ..+..+++|+.|+|++|...+..|..+..+++|+.|++++|. +..+|..+..+++|+.|++.++.
T Consensus 198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCC
Confidence 666666666554 456666666777776666333333356666666677766654 34666666666666666665443
No 82
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=6.5e-13 Score=126.70 Aligned_cols=122 Identities=22% Similarity=0.266 Sum_probs=64.4
Q ss_pred cccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724 267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~ 345 (437)
..+++|+.|++++|. +..+| .+ .+++|+.|+|++|.+.. +|.+..+++|+.|+|++|.++.+|.... ++|+.|+
T Consensus 38 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISD-LSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCC-ChhhccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 345555666666554 44455 23 55566666666554332 2335555566666666665555544222 5566666
Q ss_pred ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724 346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
|++|. ++.+| .+..+++|+.|++++|. +..+| .+..+++|+.|++.++
T Consensus 113 L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 113 LDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS
T ss_pred ccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC
Confidence 66555 44443 35555666666665544 33344 4555555665555444
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.44 E-value=4.3e-13 Score=139.54 Aligned_cols=173 Identities=11% Similarity=0.069 Sum_probs=116.6
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCC--CCCC-CCCCCCCCEE
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK--RLPD-ISSAANIEEM 321 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~--~lp~-l~~l~~L~~L 321 (437)
|+.|++++|...... +...+++|++|++++|.+.+.+|..+ .+++|+.|+|++|.+.. .+|. +..+++|++|
T Consensus 304 L~~L~l~~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 304 IKNFTVSGTRMVHML----CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CSEEEEESSCCCCCC----CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred eeEEEcCCCcccccc----chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 677777777543221 12467788888888887555567666 78888888888876554 3444 7778888888
Q ss_pred EeeCCCCcc-cChh-hcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 322 FLNGTAIEE-LPSS-IECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 322 ~Ls~n~l~~-lp~~-i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+|++|.+.. +|.. +..+++|+.|++++|...+.+|..+. ++|+.|++++|.. ..+|..+..+++|+.|++.+|..
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc-cccchhhhcCCCCCEEECCCCcC
Confidence 888888885 7764 66777888888888775566665543 6777777777653 47777777777777777766533
Q ss_pred hhhcccccc-CCCcccccccccCCCCCCcc
Q 013724 400 FFVETSAAS-GDDWKSAFDAAADGPVKPSQ 428 (437)
Q Consensus 400 ~~~~~~~~~-~~~~~~l~~~~~s~~~~~~~ 428 (437)
. ..+.. ...++.++.+..+++.+.+.
T Consensus 457 ~---~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 457 K---SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp C---CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred C---ccCHHHhccCCcccEEECcCCCCccc
Confidence 3 22222 44566677777777766643
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.44 E-value=3.3e-13 Score=126.28 Aligned_cols=150 Identities=13% Similarity=0.127 Sum_probs=121.6
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccC-CCCCCCcCccC--CCCCccEEeeeCCCCCCCCCCCCCCCCCC--
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRD-CKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISSAANIE-- 319 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~-- 319 (437)
.|+.|++++|..++..+. ..+..+++|++|++++ |. +..+|... .+++|++|+|++|.+. .+|.+..+++|+
T Consensus 56 ~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~~~~l~~L~~L 132 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIF 132 (239)
T ss_dssp TCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEEEECCC-SCCCCTTCCBCCSE
T ss_pred CCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCCCCCCc-cccccccccccccc
Confidence 578899998863444332 2456789999999998 66 77777654 8999999999998755 478888888888
Q ss_pred -EEEeeCC-CCcccCh-hhcCCCCCC-EEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccc-hhccCC-CCCceee
Q 013724 320 -EMFLNGT-AIEELPS-SIECLYKLL-HLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLN-FDIWSI-LPLVLTT 393 (437)
Q Consensus 320 -~L~Ls~n-~l~~lp~-~i~~L~~L~-~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L-~~L~~L~ 393 (437)
+|++++| .++.+|. .+..+++|+ .|++++|. +..+|......++|+.|++++|..+..+| ..+..+ ++|+.|+
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 9999999 9998876 488999999 99999998 67888776555899999999986566775 568888 9999999
Q ss_pred ccccc
Q 013724 394 FIYVY 398 (437)
Q Consensus 394 ~~~~~ 398 (437)
+.++.
T Consensus 212 l~~N~ 216 (239)
T 2xwt_C 212 VSQTS 216 (239)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 86543
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.43 E-value=1.7e-13 Score=133.66 Aligned_cols=171 Identities=16% Similarity=0.104 Sum_probs=127.6
Q ss_pred hhhhhhcccCcccCCCCCCcccccc-----CceEEEeccCCCCCCCcC-ccC-CCCCccEEeeeCCCCCCC--CC-CC--
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHL-----NTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKR--LP-DI-- 312 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l-----~~L~~L~Ls~n~~l~~lp-~~~-~l~~L~~L~Ls~n~~~~~--lp-~l-- 312 (437)
.|+.|++++|...+. +..+..+ ++|++|++++|. ++.++ ..+ .+++|++|+|++|.+.+. +| .+
T Consensus 122 ~L~~L~Ls~N~l~~~---~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 122 DLNILNLRNVSWATR---DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSEEEEESCBCSSS---SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CccEEEccCCCCcch---hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 477888888876544 2344555 899999999998 45555 556 899999999999987654 22 33
Q ss_pred CCCCCCCEEEeeCCCCcccC---h-hhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCC
Q 013724 313 SSAANIEEMFLNGTAIEELP---S-SIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSIL 387 (437)
Q Consensus 313 ~~l~~L~~L~Ls~n~l~~lp---~-~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~ 387 (437)
..+++|++|+|++|.|+.++ . .+..+++|+.|+|++|...+..| ..+..+++|++|++++|.. ..+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-Chhhhhcc--C
Confidence 78999999999999998543 3 34578999999999998545454 4466789999999999875 48898777 8
Q ss_pred CCceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724 388 PLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 388 ~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
+|+.|++.++..... +. ...++.++.+..+++.+.
T Consensus 275 ~L~~L~Ls~N~l~~~---p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN---PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEEEECCSSCCCSC---CC-TTTSCEEEEEECTTCTTT
T ss_pred CceEEECCCCCCCCC---hh-HhhCCCCCEEeccCCCCC
Confidence 899999876644322 33 566788888888887664
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=134.11 Aligned_cols=175 Identities=16% Similarity=0.033 Sum_probs=129.4
Q ss_pred hhhhhhcccCcccCCCCCC--ccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCC--CC--C-CCCCC
Q 013724 245 ALKEKIISACNIFTKTPNP--SFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKR--LP--D-ISSAA 316 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~--~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~--lp--~-l~~l~ 316 (437)
.|+.|++++|...+..+.. ..+..+++|++|++++|.+.+..|..+ .+++|++|+|++|.+.+. ++ . +..++
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 197 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP 197 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence 4777888888765432210 122368899999999999544444555 899999999999986542 22 2 47899
Q ss_pred CCCEEEeeCCCCcccChh----hcCCCCCCEEeccCCCCCCCCccccCCC---CCCCEEeeeCCCCCCccchhccCCCCC
Q 013724 317 NIEEMFLNGTAIEELPSS----IECLYKLLHLDLEDCKSLKSLPSGLCKL---KSLKYLTLNGCSILQRLNFDIWSILPL 389 (437)
Q Consensus 317 ~L~~L~Ls~n~l~~lp~~----i~~L~~L~~L~L~~n~~l~~LP~~l~~L---~~L~~L~Ls~c~~l~~lP~~l~~L~~L 389 (437)
+|++|+|++|.++.++.. ++.+++|++|+|++|...+..|..+..+ ++|++|+|++|... .+|..+. ++|
T Consensus 198 ~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L 274 (310)
T 4glp_A 198 AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKL 274 (310)
T ss_dssp CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCC
T ss_pred CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCC
Confidence 999999999999877653 5788999999999999555558877776 69999999998754 8898775 799
Q ss_pred ceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724 390 VLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 390 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
+.|++.++..... +. ...++.++.+..+++.+.
T Consensus 275 ~~L~Ls~N~l~~~---~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 275 RVLDLSSNRLNRA---PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCEECCSCCCCSC---CC-TTSCCCCSCEECSSTTTS
T ss_pred CEEECCCCcCCCC---ch-hhhCCCccEEECcCCCCC
Confidence 9999877655422 11 345577778888777654
No 87
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.43 E-value=1.4e-12 Score=128.51 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=75.8
Q ss_pred ccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCC----------------------CCCCCEEEe
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISS----------------------AANIEEMFL 323 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~----------------------l~~L~~L~L 323 (437)
+..+++|++|++++|. +..++....+++|+.|++++|.....++.+.. +++|+.|++
T Consensus 106 ~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 184 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSL 184 (347)
T ss_dssp GTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred HcCCCcCCEEECcCCc-ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEc
Confidence 3344555555555554 33333311444555555555444444444444 444555555
Q ss_pred eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhc
Q 013724 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVE 403 (437)
Q Consensus 324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~ 403 (437)
++|.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.. ..+|. +..+++|+.|++.+|.....
T Consensus 185 ~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 185 NYNQIEDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKI-TDLSP-LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp TTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCCC-
T ss_pred cCCccccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCcc-CCCcc-hhcCCCCCEEECCCCccCCC-
Confidence 5544444433 4445555555555544 333333 55666777777777653 33443 66777777777665543321
Q ss_pred cccccCCCcccccccccCCCCCC
Q 013724 404 TSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 404 ~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
.....++.++.+..+++.+.
T Consensus 259 ---~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 259 ---NAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp ---GGGTTCTTCCEEECCSSCCC
T ss_pred ---hhHhcCCCcCEEEccCCccC
Confidence 12334455555555555443
No 88
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.43 E-value=6.5e-13 Score=120.51 Aligned_cols=109 Identities=24% Similarity=0.273 Sum_probs=81.5
Q ss_pred ceEEEeccCCCCCCCcCcc--C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEe
Q 013724 271 TLVVLNLRDCKSLKSLPAG--I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLD 345 (437)
Q Consensus 271 ~L~~L~Ls~n~~l~~lp~~--~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~ 345 (437)
+|+.|++++|. ++.++.. + .+++|++|+|++|.+.+..|. +..+++|++|+|++|.|+.++. .+..+++|++|+
T Consensus 30 ~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 77888888887 5555543 4 788888888888876666665 7788888888888888886654 477788888888
Q ss_pred ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccc
Q 013724 346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLN 380 (437)
Q Consensus 346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP 380 (437)
|++|...+..|..+..+++|++|+|++|+.....+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88887555557777888888888888887665544
No 89
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=5.5e-14 Score=137.49 Aligned_cols=148 Identities=13% Similarity=0.010 Sum_probs=93.5
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISSAANIEEMFL 323 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L 323 (437)
|+.|++++|...... +..+..+++|++|++++|.+.+..+..+ .+++|++|+|++|.+ ..+|....+++|+.|+|
T Consensus 122 L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~l~~L~~L~L 198 (317)
T 3o53_A 122 KKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQVVFAKLKTLDL 198 (317)
T ss_dssp CEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEEECCCCCTTCCEEEC
T ss_pred CCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-cccccccccccCCEEEC
Confidence 555666655443321 1234456777777777776333233333 467777777777653 33455455777777777
Q ss_pred eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCC-CccchhccCCCCCceeecccc
Q 013724 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSIL-QRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l-~~lP~~l~~L~~L~~L~~~~~ 397 (437)
++|.|+.+|+.+..+++|+.|+|++|. ++.+|..+..+++|+.|++++|+.. +.+|..+..+++|+.|++..+
T Consensus 199 s~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 199 SSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 777777777667777777777777776 5567777777777777777777665 566666777777776665433
No 90
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.42 E-value=8.5e-13 Score=129.60 Aligned_cols=105 Identities=14% Similarity=-0.016 Sum_probs=69.0
Q ss_pred CCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccc
Q 013724 317 NIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIY 396 (437)
Q Consensus 317 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~ 396 (437)
+|+.|++++|.++.+|..+. ++|+.|++++|...+..|..+..+++|++|++++|...+..|..+..+++|+.|++.+
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 44444444444444444332 5777777777774343446788889999999999876666666788899999999876
Q ss_pred ccchhhccccccCCCcccccccccCCCCCC
Q 013724 397 VYKFFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
+... ..+.....++.++.+..+++.+.
T Consensus 251 N~l~---~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 251 NKLS---RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp SCCC---BCCTTGGGCTTCCEEECCSSCCC
T ss_pred CcCe---ecChhhhcCccCCEEECCCCCCC
Confidence 6443 33444455666777777766665
No 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.42 E-value=5.3e-13 Score=147.50 Aligned_cols=152 Identities=20% Similarity=0.171 Sum_probs=105.5
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCc-CccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~l-p~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.++.|+|++|...... +..+..+++|++|+|++|...+.+ |..+ .+++|++|+|++|.+....|. |.++++|++|
T Consensus 25 ~l~~LdLs~N~i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TCCEEEEESCCCCEEC--SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CcCEEECCCCcCCccC--hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 4667777776554322 234566788888888888656666 3444 778888888888776666565 7788888888
Q ss_pred EeeCCCCcc-cChh--hcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCC--CCCceeecc
Q 013724 322 FLNGTAIEE-LPSS--IECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSI--LPLVLTTFI 395 (437)
Q Consensus 322 ~Ls~n~l~~-lp~~--i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L--~~L~~L~~~ 395 (437)
+|++|.+.. +|.. +++|++|++|+|++|...+..| ..++++++|++|+|++|...+..|..+..+ ++|+.|++.
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 888888773 5554 7778888888888877443333 457788888888888877766667766666 677777765
Q ss_pred ccc
Q 013724 396 YVY 398 (437)
Q Consensus 396 ~~~ 398 (437)
.+.
T Consensus 183 ~n~ 185 (844)
T 3j0a_A 183 ANS 185 (844)
T ss_dssp CSB
T ss_pred CCc
Confidence 443
No 92
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=1.4e-13 Score=149.64 Aligned_cols=120 Identities=21% Similarity=0.308 Sum_probs=104.5
Q ss_pred CccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCC
Q 013724 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYK 340 (437)
Q Consensus 263 ~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~ 340 (437)
+..+..++.|+.|+|++|. +..+|..+ .+++|++|+|++|.+. .+|. |+.|++|++|+|++|.|+.+|..|+.|++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 3456678999999999998 66888877 9999999999999766 7776 99999999999999999999999999999
Q ss_pred CCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccC
Q 013724 341 LLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWS 385 (437)
Q Consensus 341 L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~ 385 (437)
|++|+|++|. ++.+|..|+.|++|++|+|++|++.+.+|..+..
T Consensus 295 L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 295 LKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 9999999998 7899999999999999999999988888876543
No 93
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.41 E-value=1.5e-12 Score=134.02 Aligned_cols=101 Identities=27% Similarity=0.375 Sum_probs=42.3
Q ss_pred cCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccC
Q 013724 269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED 348 (437)
Q Consensus 269 l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~ 348 (437)
+++|+.|++++|. +..++....+++|+.|++++|.+... +.+..+++|+.|++++|.+..++. +..+++|+.|++++
T Consensus 220 l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 220 LTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNE 296 (466)
T ss_dssp CTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred cCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCccccc-hhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCC
Confidence 4444444444444 33332211444444444444433222 224444444444444444444433 44444444444444
Q ss_pred CCCCCCCccccCCCCCCCEEeeeCCC
Q 013724 349 CKSLKSLPSGLCKLKSLKYLTLNGCS 374 (437)
Q Consensus 349 n~~l~~LP~~l~~L~~L~~L~Ls~c~ 374 (437)
|. +..++. +..+++|+.|++++|.
T Consensus 297 n~-l~~~~~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 297 NQ-LEDISP-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp SC-CSCCGG-GGGCTTCSEEECCSSC
T ss_pred Cc-ccCchh-hcCCCCCCEEECcCCc
Confidence 44 233322 3444444444444443
No 94
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=4.8e-13 Score=133.34 Aligned_cols=147 Identities=20% Similarity=0.139 Sum_probs=113.0
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF 322 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~ 322 (437)
++.|+|++|..... +...+...+++|+.|+|++|. +..++.. + .+++|++|+|++|.+....+. |..+++|+.|+
T Consensus 41 l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 41 TALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp CSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 56788888765433 222222278999999999998 6666654 5 899999999999876554454 88999999999
Q ss_pred eeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCcccc----CCCCCCCEEeeeCCCCCCccc-hhccCCCCC--ceeec
Q 013724 323 LNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSGL----CKLKSLKYLTLNGCSILQRLN-FDIWSILPL--VLTTF 394 (437)
Q Consensus 323 Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~~l----~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L--~~L~~ 394 (437)
|++|.|..+ |..+..+++|+.|+|++|. +..+|..+ ..+++|+.|+|++|.+. .+| ..+..+..+ +.|++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEEC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEe
Confidence 999999977 5689999999999999998 77888765 67999999999997654 555 566777663 66666
Q ss_pred cc
Q 013724 395 IY 396 (437)
Q Consensus 395 ~~ 396 (437)
.+
T Consensus 197 ~~ 198 (361)
T 2xot_A 197 HN 198 (361)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 95
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.40 E-value=3.1e-12 Score=131.70 Aligned_cols=137 Identities=17% Similarity=0.158 Sum_probs=95.6
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFL 323 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L 323 (437)
.|+.|++++|...+ .+ +..+++|++|++++|. +..++ + .+++|++|++++|..++.+ .+..+++|+.|++
T Consensus 107 ~L~~L~L~~N~l~~-l~----~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l 177 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD----VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDC 177 (457)
T ss_dssp TCCEEECCSSCCSC-CC----CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCe-ec----CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEEC
Confidence 46667777665433 21 4567777777777776 44453 3 6777777777777666655 4677788888888
Q ss_pred eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~ 398 (437)
++|.++.+| ++.+++|+.|++++|. +..++ ++.+++|++|++++|...+ +| ++.+++|+.|++.++.
T Consensus 178 s~n~l~~l~--l~~l~~L~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 178 SFNKITELD--VSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CSSCCCCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred CCCccceec--cccCCCCCEEECcCCc-CCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence 888888776 7778888888888877 55553 6777888888888776444 66 6777888888776554
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=1.1e-12 Score=139.85 Aligned_cols=167 Identities=18% Similarity=0.108 Sum_probs=122.7
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFL 323 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L 323 (437)
..|+.|++++|.... .+ .+..+++|+.|+|++|. +..++....+++|+.|+|++|.+ ..+|.+..+++|+.|+|
T Consensus 43 ~~L~~L~l~~n~i~~-l~---~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ---GIQYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT---TGGGCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Ch---HHccCCCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCCC-CCChhhccCCCCCEEEe
Confidence 356777777776432 22 35678899999999988 66666633889999999998864 45677888999999999
Q ss_pred eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhc
Q 013724 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVE 403 (437)
Q Consensus 324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~ 403 (437)
++|.|..++ .+..|++|+.|+|++|. +..+ ..+..|++|+.|+|++|.+.+..| +..+++|+.|++.+|.....
T Consensus 117 s~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l- 190 (605)
T 1m9s_A 117 EHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 190 (605)
T ss_dssp TTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred cCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-
Confidence 999988874 58889999999999988 6666 568889999999999887655444 88889999998877644322
Q ss_pred cccccCCCcccccccccCCCCC
Q 013724 404 TSAASGDDWKSAFDAAADGPVK 425 (437)
Q Consensus 404 ~~~~~~~~~~~l~~~~~s~~~~ 425 (437)
.....++.|..+.++++.+
T Consensus 191 ---~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 191 ---RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ---GGGTTCTTCSEEECCSEEE
T ss_pred ---hHHccCCCCCEEEccCCcC
Confidence 1234455666665555443
No 97
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.40 E-value=1e-12 Score=141.23 Aligned_cols=150 Identities=16% Similarity=0.099 Sum_probs=75.9
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEe
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL 323 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~L 323 (437)
++.|++++|...+. + +..+..+++|++|++++|.+.+..|..+ .+++|++|+|++|.+....+. |.++++|++|+|
T Consensus 27 l~~L~Ls~n~l~~~-~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 27 ITVLNLTHNQLRRL-P-AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp CSEEECCSSCCCCC-C-GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CcEEECCCCCCCCc-C-HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 44555555543221 1 1234455566666666655333223333 556666666666543332222 555666666666
Q ss_pred eCCCCcccC-hhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhcc--CCCCCceeecccc
Q 013724 324 NGTAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIW--SILPLVLTTFIYV 397 (437)
Q Consensus 324 s~n~l~~lp-~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~--~L~~L~~L~~~~~ 397 (437)
++|.+..+| ..++++++|++|++++|...+..|..++++++|++|++++|...+..|..+. .+++|+.|++.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 666665554 3455566666666666654444444555566666666665554433333332 3355555555443
No 98
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.40 E-value=1.4e-12 Score=136.45 Aligned_cols=129 Identities=18% Similarity=0.138 Sum_probs=111.5
Q ss_pred CceEEEeccCCCCCCCc-CccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEe
Q 013724 270 NTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLD 345 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~l-p~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~ 345 (437)
++|++|++++|. ++.+ |..+ .+++|++|+|++|.+....|. +..+++|++|+|++|.++.+|+. ++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 689999999999 5555 5556 999999999999987766665 99999999999999999988765 99999999999
Q ss_pred ccCCCCCC-CCccccCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeecccccc
Q 013724 346 LEDCKSLK-SLPSGLCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 346 L~~n~~l~-~LP~~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~~~~~ 399 (437)
+++|...+ .+|..++++++|++|++++|..++.+| ..+..+++|+.|++.++..
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99998433 457789999999999999998888887 5799999999999876543
No 99
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.39 E-value=3.6e-13 Score=142.43 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=113.3
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.++.|+|++|.... .+ +..+..+++|++|+|++|. +..+|+. + .+++|++|+|++|++....+. |.++++|++|
T Consensus 53 ~~~~LdLs~N~i~~-l~-~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPLRH-LG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCCCE-EC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CCCEEEeeCCCCCC-CC-HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 46789999886543 22 2346779999999999998 7777765 4 899999999999975544444 8999999999
Q ss_pred EeeCCCCcccCh-hhcCCCCCCEEeccCCCCCC-CCccccCCCCCCCEEeeeCCCCCCccchhccCCCCC
Q 013724 322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLK-SLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPL 389 (437)
Q Consensus 322 ~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~-~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L 389 (437)
+|++|+|+.+|+ .+++|++|+.|+|++|.... .+|..++.+++|++|++++|...+..|..+..+.++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 999999998876 58999999999999998433 467888999999999999988666566666554443
No 100
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.38 E-value=4.5e-13 Score=140.47 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=124.3
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCc-cC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~-~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
.|+.|++++|...+.. ..+..+++|+.|++++|.+.+..|. .+ .+++|++|+|++|.+....|. +..+++|+.|
T Consensus 374 ~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 374 SLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp CCCEEECCSCSEEEEE---EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred ccCEEECCCCcccccc---ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 5666777776544322 1256789999999999985444442 34 899999999999988777776 8899999999
Q ss_pred EeeCCCCc--ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724 322 FLNGTAIE--ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 322 ~Ls~n~l~--~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~ 398 (437)
+|++|.+. .+|..+..+++|+.|+|++|...+..|..+..+++|++|++++|...+..|..+.++++|+.|++.++.
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 99999997 589999999999999999999555568889999999999999998766666778999999999987654
No 101
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=136.54 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=122.7
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCC--CcCccC-CCCCccEEeeeCCCCCCCCCC--CCCCCCC
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLK--SLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANI 318 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~--~lp~~~-~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L 318 (437)
..|+.|++++|...+..+ ..+..+++|+.|++++|.+.+ .+|..+ .+++|++|+|++|.+...+|. +..+++|
T Consensus 324 ~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVF--ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCEEECCSSCCCTTTT--TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CcccEEEeECCccChhhh--hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 357889999987655333 346789999999999998433 344555 899999999999988776774 7889999
Q ss_pred CEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchh-ccCCCCCceeeccc
Q 013724 319 EEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFD-IWSILPLVLTTFIY 396 (437)
Q Consensus 319 ~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~-l~~L~~L~~L~~~~ 396 (437)
+.|+|++|.++ .+|..+. ++|+.|+|++|. ++.+|..+..+++|++|++++|.. ..+|.. +..+++|+.|++.+
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCcC-CccCHHHhccCCcccEEECcC
Confidence 99999999997 5666554 799999999998 779999988999999999999864 578876 89999999999866
Q ss_pred cc
Q 013724 397 VY 398 (437)
Q Consensus 397 ~~ 398 (437)
+.
T Consensus 478 N~ 479 (520)
T 2z7x_B 478 NP 479 (520)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 102
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.38 E-value=1.8e-12 Score=139.20 Aligned_cols=155 Identities=16% Similarity=0.097 Sum_probs=122.6
Q ss_pred CceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEe
Q 013724 270 NTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLD 345 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~ 345 (437)
++|++|++++|. +..+|.. + .+++|++|+|++|.+.+..|. +.++++|++|+|++|.++.+|. .++.+++|++|+
T Consensus 25 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 689999999998 6666654 5 899999999999987777777 8899999999999999999987 599999999999
Q ss_pred ccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCC
Q 013724 346 LEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPV 424 (437)
Q Consensus 346 L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~ 424 (437)
|++|. +..+| ..++++++|++|++++|...+..|..++++++|+.|++.++...............+.++.+..+++.
T Consensus 104 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 99998 45555 67999999999999999888888888999999999998776432111110111123456666666554
Q ss_pred CC
Q 013724 425 KP 426 (437)
Q Consensus 425 ~~ 426 (437)
+.
T Consensus 183 l~ 184 (680)
T 1ziw_A 183 IK 184 (680)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 103
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.37 E-value=2.3e-12 Score=135.69 Aligned_cols=171 Identities=14% Similarity=0.033 Sum_probs=98.3
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCC--CCCC-CCCCCCCCEE
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK--RLPD-ISSAANIEEM 321 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~--~lp~-l~~l~~L~~L 321 (437)
|+.|++++|...... +...+++|++|++++|.+.+.+|..+ .+++|+.|+|++|.+.. .+|. +..+++|+.|
T Consensus 333 L~~L~l~~n~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 333 IKMLSISDTPFIHMV----CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp CSEEEEESSCCCCCC----CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred ceEEEccCCCccccc----CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 566666666543211 12456677777777776554456555 67777777777765443 1222 6667777777
Q ss_pred EeeCCCCcc-cChh-hcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 322 FLNGTAIEE-LPSS-IECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 322 ~Ls~n~l~~-lp~~-i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+|++|.++. +|.. +..+++|+.|++++|...+.+|..+. ++|++|++++|. +..+|..+..+++|+.|++.++..
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCC
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCC
Confidence 777777764 6653 55666666666666664444444332 466666666653 446666666666666666644432
Q ss_pred hhhcccccc-CCCcccccccccCCCCCC
Q 013724 400 FFVETSAAS-GDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 400 ~~~~~~~~~-~~~~~~l~~~~~s~~~~~ 426 (437)
. ..+.. ...++.++.+..+++.+.
T Consensus 486 ~---~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 486 K---SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp C---CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred C---CCCHHHHhcCCCCCEEEecCCCcC
Confidence 2 22222 344555566666665554
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.37 E-value=2.6e-14 Score=140.09 Aligned_cols=151 Identities=21% Similarity=0.296 Sum_probs=81.6
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCC--cCccC-CCCCccEEeeeCC-CCCCC-CCC-CCCCC-C
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGC-SKLKR-LPD-ISSAA-N 317 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~--lp~~~-~l~~L~~L~Ls~n-~~~~~-lp~-l~~l~-~ 317 (437)
.|+.|++++|...... +..+..+++|++|++++|..++. ++..+ .+++|++|+|++| .+... ++. +..++ +
T Consensus 119 ~L~~L~L~~~~l~~~~--~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPI--VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp CCSEEECTTCBCCHHH--HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCEEeCcCcccCHHH--HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 4555666665432111 11234466666666666632332 34333 5666666666666 33221 333 55566 6
Q ss_pred CCEEEeeCCC--Cc--ccChhhcCCCCCCEEeccCCCCC-CCCccccCCCCCCCEEeeeCCCCCC-ccchhccCCCCCce
Q 013724 318 IEEMFLNGTA--IE--ELPSSIECLYKLLHLDLEDCKSL-KSLPSGLCKLKSLKYLTLNGCSILQ-RLNFDIWSILPLVL 391 (437)
Q Consensus 318 L~~L~Ls~n~--l~--~lp~~i~~L~~L~~L~L~~n~~l-~~LP~~l~~L~~L~~L~Ls~c~~l~-~lP~~l~~L~~L~~ 391 (437)
|++|+|++|. ++ .+|..+..+++|+.|++++|..+ ...+..+..+++|++|++++|..+. .....+.++++|+.
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 6666666663 32 45555666666666666666632 3445556666666666666664221 11124556666666
Q ss_pred eecccc
Q 013724 392 TTFIYV 397 (437)
Q Consensus 392 L~~~~~ 397 (437)
|++.+|
T Consensus 277 L~l~~~ 282 (336)
T 2ast_B 277 LQVFGI 282 (336)
T ss_dssp EECTTS
T ss_pred EeccCc
Confidence 666555
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=4.4e-13 Score=116.04 Aligned_cols=124 Identities=25% Similarity=0.342 Sum_probs=103.4
Q ss_pred HhhhhhhcccCccc-CCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCE
Q 013724 244 NALKEKIISACNIF-TKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEE 320 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~-~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~ 320 (437)
..++.|++++|... +..+ ..+..+++|+.|++++|. +..+ ..+ .+++|++|+|++|.+...+|. +..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE--GLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC--SCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHH--HHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 46788999998765 2333 356789999999999998 6666 445 899999999999987776777 667999999
Q ss_pred EEeeCCCCcccC--hhhcCCCCCCEEeccCCCCCCCCcc----ccCCCCCCCEEeeeC
Q 013724 321 MFLNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSLPS----GLCKLKSLKYLTLNG 372 (437)
Q Consensus 321 L~Ls~n~l~~lp--~~i~~L~~L~~L~L~~n~~l~~LP~----~l~~L~~L~~L~Ls~ 372 (437)
|++++|.++.+| ..++.+++|+.|++++|. +..+|. .+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999865 789999999999999998 666665 688999999999863
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.36 E-value=3e-13 Score=140.43 Aligned_cols=123 Identities=13% Similarity=0.045 Sum_probs=54.3
Q ss_pred ccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724 268 HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~ 345 (437)
.+++|+.|+|++|.+.+..|..+ .+++|+.|+|++|.+. .+|.+..+++|+.|+|++|.|+.+|+.+..+++|+.|+
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-cccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEE
Confidence 34444444444444322233332 3444444444444322 22333334444444444444444444444444444444
Q ss_pred ccCCCCCCCCccccCCCCCCCEEeeeCCCCC-CccchhccCCCCCcee
Q 013724 346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSIL-QRLNFDIWSILPLVLT 392 (437)
Q Consensus 346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l-~~lP~~l~~L~~L~~L 392 (437)
|++|. +..+|..+..+++|+.|++++|+.. +.+|..+..++.|+.+
T Consensus 221 Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 221 LRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp CTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred ecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 44444 3344444444444444444444433 3344444444444433
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.36 E-value=7.4e-13 Score=129.45 Aligned_cols=148 Identities=15% Similarity=0.040 Sum_probs=116.1
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCc-cC-CCCCccEEeeeCCCCCCCCCC-C-CCCCCCC
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD-I-SSAANIE 319 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~-~~-~l~~L~~L~Ls~n~~~~~lp~-l-~~l~~L~ 319 (437)
..|+.|++++|...... ...+++|+.|++++|. +..++. .+ .+++|++|+|++|.+....+. + ..+++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 99 PSIETLHAANNNISRVS-----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp TTCCEEECCSSCCSEEE-----ECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECCCCccCCcC-----ccccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 35777788777654322 2236789999999998 555544 44 789999999999876665554 4 4789999
Q ss_pred EEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 320 EMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 320 ~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+|+|++|.|+.+|.. ..+++|+.|+|++|. +..+|..+..+++|+.|++++|. +..+|..+..+++|+.|++.++..
T Consensus 173 ~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp EEECTTSCCCEEECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCC
T ss_pred EEECCCCcCcccccc-cccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCc
Confidence 999999999988644 458999999999998 77888889999999999999976 557898999999999999876554
Q ss_pred h
Q 013724 400 F 400 (437)
Q Consensus 400 ~ 400 (437)
.
T Consensus 250 ~ 250 (317)
T 3o53_A 250 H 250 (317)
T ss_dssp B
T ss_pred c
Confidence 3
No 108
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=6.7e-13 Score=137.78 Aligned_cols=149 Identities=13% Similarity=-0.008 Sum_probs=117.6
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CC-CCCCCCE
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-IS-SAANIEE 320 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~-~l~~L~~ 320 (437)
..|+.|++++|...+..+ ..+++|+.|++++|.+.+..|..+ .+++|+.|+|++|.+.+..|. +. .+++|+.
T Consensus 99 ~~L~~L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp TTCCEEECCSSCCCCEEE-----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECcCCcCCCCCc-----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 457778888776544322 246789999999998554445555 889999999999987776665 54 7899999
Q ss_pred EEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccch
Q 013724 321 MFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKF 400 (437)
Q Consensus 321 L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~ 400 (437)
|+|++|.|+.+|. +..+++|+.|+|++|. +..+|..+..+++|+.|+|++|.. ..+|..+..+++|+.|++.++...
T Consensus 174 L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 174 LNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCBC
T ss_pred EecCCCccccccc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcC-cccchhhccCCCCCEEEcCCCCCc
Confidence 9999999998865 4468999999999998 777887899999999999999764 468988999999999998765443
No 109
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.35 E-value=3.5e-12 Score=140.96 Aligned_cols=130 Identities=22% Similarity=0.169 Sum_probs=111.2
Q ss_pred cCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCC-CC-CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEE
Q 013724 269 LNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHL 344 (437)
Q Consensus 269 l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~l-p~-l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L 344 (437)
.++|++|+|++|.+.+..|..+ .+++|++|+|++|.....+ |. |.++++|++|+|++|.|..+ |..++.|++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 4789999999998444445666 9999999999999777776 44 99999999999999999966 7899999999999
Q ss_pred eccCCCCCCCCccc--cCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeeccccc
Q 013724 345 DLEDCKSLKSLPSG--LCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 345 ~L~~n~~l~~LP~~--l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~~~~ 398 (437)
+|++|...+.+|.. ++++++|++|+|++|...+..| ..++++++|+.|++.++.
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 99999966666665 8999999999999998766544 679999999999987654
No 110
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.34 E-value=6.9e-12 Score=129.03 Aligned_cols=144 Identities=23% Similarity=0.265 Sum_probs=113.6
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN 324 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls 324 (437)
.|+.|++++|..... ..+..+++|+.|++++|. +..++....+++|+.|++++|.+ ..++.+..+++|+.|+++
T Consensus 178 ~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 178 TLERLDISSNKVSDI----SVLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLA 251 (466)
T ss_dssp TCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECC
T ss_pred CCCEEECcCCcCCCC----hhhccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCCc-ccchhhhcCCCCCEEECC
Confidence 577788888764332 236678999999999998 54554433789999999999864 456778889999999999
Q ss_pred CCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 325 ~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+|.+..+++ +..+++|+.|++++|. +..+|. +..+++|+.|++++|...+ ++. +..+++|+.|++.+|..
T Consensus 252 ~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 252 NNQISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCC
T ss_pred CCccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcC
Confidence 999998766 8899999999999998 666666 8899999999999987544 443 77888899998877643
No 111
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.34 E-value=3.2e-12 Score=134.52 Aligned_cols=148 Identities=17% Similarity=0.106 Sum_probs=122.1
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcC---ccC-CCCCccEEeeeCCCCCCCCCC--CCCCCC
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP---AGI-HLEFLKELDLSGCSKLKRLPD--ISSAAN 317 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp---~~~-~l~~L~~L~Ls~n~~~~~lp~--l~~l~~ 317 (437)
..|+.|++++|...+..+ ..+..+++|+.|++++|. +..++ ..+ .+++|+.|+|++|.+...+|. +..+++
T Consensus 353 ~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVF--QGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp CCCCEEECCSSCCCTTTT--TTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCceEEECCCCccccchh--hhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 367889999887655333 356789999999999998 65554 445 899999999999987775775 888999
Q ss_pred CCEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchh-ccCCCCCceeecc
Q 013724 318 IEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFD-IWSILPLVLTTFI 395 (437)
Q Consensus 318 L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~-l~~L~~L~~L~~~ 395 (437)
|+.|+|++|.++ .+|..+. ++|+.|+|++|. ++.+|..+..+++|++|++++|.. ..+|.. +..+++|+.|++.
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCC-CCCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCC-CCCCHHHHhcCCCCCEEEec
Confidence 999999999997 5555443 799999999997 789999988999999999999764 578887 8999999999986
Q ss_pred ccc
Q 013724 396 YVY 398 (437)
Q Consensus 396 ~~~ 398 (437)
++.
T Consensus 506 ~N~ 508 (562)
T 3a79_B 506 DNP 508 (562)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=3.6e-12 Score=126.95 Aligned_cols=128 Identities=18% Similarity=0.117 Sum_probs=105.1
Q ss_pred CceEEEeccCCCCCCCcCccC---CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEE
Q 013724 270 NTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHL 344 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~lp~~~---~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L 344 (437)
..|+.|+|++|. ++.++... .+++|+.|+|++|.+....+. |..+++|++|+|++|.|+.++. .+..+++|+.|
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 468999999998 66666554 789999999999976665555 9999999999999999998876 58899999999
Q ss_pred eccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhc----cCCCCCceeecccccc
Q 013724 345 DLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDI----WSILPLVLTTFIYVYK 399 (437)
Q Consensus 345 ~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l----~~L~~L~~L~~~~~~~ 399 (437)
+|++|......|..+..+++|+.|+|++|. +..+|..+ ..+++|+.|++.++..
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 999999544456789999999999999976 55677664 6799999999876543
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=5.7e-12 Score=114.25 Aligned_cols=123 Identities=17% Similarity=0.128 Sum_probs=105.9
Q ss_pred EEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEEeccCC
Q 013724 273 VVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDC 349 (437)
Q Consensus 273 ~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n 349 (437)
+.++++++. ++.+|..+ ..+|+.|+|++|.+....+. +..+++|++|+|++|.|+.+ |..+..+++|+.|+|++|
T Consensus 11 ~~l~~s~~~-l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSC-CSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCC-cCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 688999998 78899876 23899999999976665554 88999999999999999977 678999999999999999
Q ss_pred CCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724 350 KSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 350 ~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
...+..|..+..+++|++|+|++|...+..|..+..+++|+.|++.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 944444556899999999999999888888999999999999998654
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.33 E-value=1.2e-13 Score=135.40 Aligned_cols=176 Identities=12% Similarity=0.079 Sum_probs=131.2
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCC-cCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCE
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS-LPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEE 320 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~-lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~ 320 (437)
..++.+++.++...+..+. ...+++|+.|++++|.+... +|..+ .+++|++|+|++|.+....+. +..+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCccccccchh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 4566777777765443322 34689999999999984333 66555 899999999999976655555 888999999
Q ss_pred EEeeCC-CCc--ccChhhcCCCCCCEEeccCCCCCCC--CccccCCCC-CCCEEeeeCCC--CC-CccchhccCCCCCce
Q 013724 321 MFLNGT-AIE--ELPSSIECLYKLLHLDLEDCKSLKS--LPSGLCKLK-SLKYLTLNGCS--IL-QRLNFDIWSILPLVL 391 (437)
Q Consensus 321 L~Ls~n-~l~--~lp~~i~~L~~L~~L~L~~n~~l~~--LP~~l~~L~-~L~~L~Ls~c~--~l-~~lP~~l~~L~~L~~ 391 (437)
|+|++| .++ .++..+..+++|+.|++++|..++. ++..+..++ +|++|++++|. .. +.+|..+..+++|+.
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence 999998 787 4777889999999999999933554 677788899 99999999984 33 567888889999999
Q ss_pred eecccccchhhccccccCCCcccccccccCCC
Q 013724 392 TTFIYVYKFFVETSAASGDDWKSAFDAAADGP 423 (437)
Q Consensus 392 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ 423 (437)
|++.+|........ .....++.++.+..+++
T Consensus 227 L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 227 LDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp EECTTCTTCCGGGG-GGGGGCTTCCEEECTTC
T ss_pred EeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCC
Confidence 99988864322211 22334466666666665
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=3.2e-14 Score=129.58 Aligned_cols=151 Identities=17% Similarity=0.229 Sum_probs=119.1
Q ss_pred HHHHHHH--hhhhhhcccCcccCCCCC----CccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCC
Q 013724 238 KLQTWRN--ALKEKIISACNIFTKTPN----PSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP 310 (437)
Q Consensus 238 ~l~~W~~--aL~~L~Ls~~~~~~~~~~----~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp 310 (437)
.++.|.. .++.+++..+...+..+. +..+..+++|++|++++|. +..+| .+ .+++|+.|+|++|.+. .+|
T Consensus 10 ~~~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~-~l~ 86 (198)
T 1ds9_A 10 AIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIK-KIE 86 (198)
T ss_dssp HHHHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEEC-SCS
T ss_pred HHHHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcc-ccc
Confidence 3455543 455567776665544331 1246678999999999998 66788 55 8999999999998654 677
Q ss_pred C-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCcc--ccCCCCCCCEEeeeCCCCCCccchh-----
Q 013724 311 D-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS--GLCKLKSLKYLTLNGCSILQRLNFD----- 382 (437)
Q Consensus 311 ~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~--~l~~L~~L~~L~Ls~c~~l~~lP~~----- 382 (437)
. +..+++|+.|+|++|.|+.+| .+..+++|+.|++++|. +..+|. .+..+++|++|++++|+..+.+|..
T Consensus 87 ~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 87 NLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp SHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred chhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence 7 666799999999999999987 68899999999999998 777664 6899999999999999876665542
Q ss_pred -----ccCCCCCceee
Q 013724 383 -----IWSILPLVLTT 393 (437)
Q Consensus 383 -----l~~L~~L~~L~ 393 (437)
+..+++|+.|+
T Consensus 165 ~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHCSSCSEEC
T ss_pred HHHHHHHhCCCcEEEC
Confidence 78889999887
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=2.8e-12 Score=135.67 Aligned_cols=98 Identities=27% Similarity=0.306 Sum_probs=46.0
Q ss_pred eEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCC
Q 013724 272 LVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDC 349 (437)
Q Consensus 272 L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n 349 (437)
|+.|+|++|. ++.+|. + .+++|+.|+|++|.+. .+|. ++.+++|+.|+|++|.|+.+| .++.|++|+.|+|++|
T Consensus 443 L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred ceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 4445555544 333443 3 4445555555544333 3333 444555555555555554444 4444555555555554
Q ss_pred CCCCCC--ccccCCCCCCCEEeeeCCC
Q 013724 350 KSLKSL--PSGLCKLKSLKYLTLNGCS 374 (437)
Q Consensus 350 ~~l~~L--P~~l~~L~~L~~L~Ls~c~ 374 (437)
. +..+ |..++.+++|+.|+|++|+
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred C-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 4 2222 4444455555555555444
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=112.36 Aligned_cols=105 Identities=17% Similarity=0.278 Sum_probs=73.6
Q ss_pred CceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEec
Q 013724 270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDL 346 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L 346 (437)
++|+.|++++|. +..+|..+ .+++|+.|+|++|.+....+. |..+++|++|+|++|.|+.+++ .+..+++|+.|+|
T Consensus 31 ~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 467777777776 56677655 777777777777765554444 7777777777777777776654 5777777777777
Q ss_pred cCCCCCCCCcc-ccCCCCCCCEEeeeCCCCC
Q 013724 347 EDCKSLKSLPS-GLCKLKSLKYLTLNGCSIL 376 (437)
Q Consensus 347 ~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l 376 (437)
++|. +..+|. .+..+++|+.|+|++|+..
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 7777 555554 3667777777777777643
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=1.4e-12 Score=116.38 Aligned_cols=125 Identities=15% Similarity=0.202 Sum_probs=102.4
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF 322 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~ 322 (437)
.|+.|++++|.... . +.+....++|++|++++|. ++.+ ..+ .+++|++|+|++|.+....+. +..+++|++|+
T Consensus 20 ~L~~L~l~~n~l~~-i--~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 20 RDRELDLRGYKIPV-I--ENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp SCEEEECTTSCCCS-C--CCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CceEEEeeCCCCch-h--HHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 46778888886553 2 3344444599999999998 6666 445 899999999999976544445 58899999999
Q ss_pred eeCCCCcccCh--hhcCCCCCCEEeccCCCCCCCCccc----cCCCCCCCEEeeeCCCC
Q 013724 323 LNGTAIEELPS--SIECLYKLLHLDLEDCKSLKSLPSG----LCKLKSLKYLTLNGCSI 375 (437)
Q Consensus 323 Ls~n~l~~lp~--~i~~L~~L~~L~L~~n~~l~~LP~~----l~~L~~L~~L~Ls~c~~ 375 (437)
|++|.|..+|. .+..+++|+.|++++|. +..+|.. +..+++|+.|++++|..
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999987 89999999999999999 6788875 89999999999999763
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=2.4e-11 Score=108.23 Aligned_cols=110 Identities=26% Similarity=0.365 Sum_probs=81.4
Q ss_pred cCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEE
Q 013724 269 LNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHL 344 (437)
Q Consensus 269 l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L 344 (437)
.++|+.|++++|. +..+|... .+++|++|+|++|.+....+. +..+++|+.|+|++|.|+.+|.. +..+++|+.|
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 3678888888887 55565543 778888888888765544444 67888888888888888877654 5778888888
Q ss_pred eccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccc
Q 013724 345 DLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLN 380 (437)
Q Consensus 345 ~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP 380 (437)
+|++|. ++.+|.. +..+++|++|++++|+..+..|
T Consensus 106 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 106 ALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECcCCc-ceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 888887 5666655 4778888888888887666554
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=2.3e-11 Score=110.42 Aligned_cols=120 Identities=27% Similarity=0.301 Sum_probs=100.9
Q ss_pred EEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCC
Q 013724 273 VVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCK 350 (437)
Q Consensus 273 ~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~ 350 (437)
+.++++++. ++.+|..+ .++|+.|+|++|.+. .+|. +..+++|+.|+|++|.|+.++. .+..+++|+.|+|++|.
T Consensus 13 ~~l~~~~~~-l~~ip~~~-~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGI-PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSC-CSSCCSCC-CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCC-CCcCCCCC-CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 578899988 88898765 468999999998754 6665 9999999999999999998864 68999999999999999
Q ss_pred CCCCCc-cccCCCCCCCEEeeeCCCCCCccch-hccCCCCCceeecccc
Q 013724 351 SLKSLP-SGLCKLKSLKYLTLNGCSILQRLNF-DIWSILPLVLTTFIYV 397 (437)
Q Consensus 351 ~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~-~l~~L~~L~~L~~~~~ 397 (437)
+..+| ..+..+++|++|+|++|.+. .+|. .+..+++|+.|++.+.
T Consensus 90 -l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSS
T ss_pred -cCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCC
Confidence 55554 57899999999999998754 5654 5889999999998653
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=1.8e-11 Score=129.40 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=90.6
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFL 323 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L 323 (437)
..|+.|++++|...+ .+. +.. +|+.|+|++|. ++.+|. .+++|+.|+|++|.+.. +|. .+++|+.|+|
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~---l~~--~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~L 167 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE---LPA--SLKHLDVDNNQ-LTMLPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSV 167 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCT--TCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEEC
T ss_pred CCCCEEEccCCCCCC-cch---hhc--CCCEEECCCCc-CCCCCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEEC
Confidence 456667777765443 222 222 77777777776 555666 56777777877776443 555 5677888888
Q ss_pred eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCC-------CEEeeeCCCCCCccchhccCCCCCceeeccc
Q 013724 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSL-------KYLTLNGCSILQRLNFDIWSILPLVLTTFIY 396 (437)
Q Consensus 324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L-------~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~ 396 (437)
++|.|+.+|. +. ++|+.|+|++|. ++.+|. +.. +| +.|+|++|. +..+|..+..+++|+.|++.+
T Consensus 168 s~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 168 RNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp CSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCS
T ss_pred CCCCCCCcch-hh--CCCCEEECcCCC-CCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeC
Confidence 8888777777 55 778888888876 667777 544 56 888887765 456787777788888887765
Q ss_pred ccc
Q 013724 397 VYK 399 (437)
Q Consensus 397 ~~~ 399 (437)
+..
T Consensus 240 N~l 242 (571)
T 3cvr_A 240 NPL 242 (571)
T ss_dssp SSC
T ss_pred CcC
Confidence 543
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=3.6e-12 Score=138.63 Aligned_cols=121 Identities=22% Similarity=0.259 Sum_probs=96.7
Q ss_pred EeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCC
Q 013724 275 LNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSL 352 (437)
Q Consensus 275 L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l 352 (437)
+++..|. +...|..+ .++.|+.|+|++|.+. .+|. +..+++|++|+|++|.|+.+|..|+.|++|++|+|++|. +
T Consensus 206 ~~~~~n~-~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l 282 (727)
T 4b8c_D 206 DDDIENR-MVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-L 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-C
T ss_pred ccccccc-eecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-C
Confidence 3444444 33445555 8999999999998765 6665 779999999999999999999999999999999999999 6
Q ss_pred CCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 353 KSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 353 ~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
..+|..++.|++|++|+|++|. ++.+|..|++|++|+.|++.++..
T Consensus 283 ~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 283 TSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCcc
Confidence 6999999999999999999985 579999999999999999976543
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=2.5e-11 Score=108.08 Aligned_cols=123 Identities=23% Similarity=0.222 Sum_probs=101.0
Q ss_pred eEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEeccCC
Q 013724 272 LVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLDLEDC 349 (437)
Q Consensus 272 L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n 349 (437)
.+.++++++. +..+|..+ .++|+.|+|++|.+....+. +..+++|++|+|++|.|+.+|.. +..+++|+.|+|++|
T Consensus 9 ~~~l~~~~~~-l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCC-CccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4678888887 77888654 47999999999886654444 78999999999999999988765 689999999999999
Q ss_pred CCCCCCcc-ccCCCCCCCEEeeeCCCCCCccchh-ccCCCCCceeeccccc
Q 013724 350 KSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNFD-IWSILPLVLTTFIYVY 398 (437)
Q Consensus 350 ~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~~-l~~L~~L~~L~~~~~~ 398 (437)
. ++.+|. .+..+++|++|++++|.. ..+|.. +..+++|+.|++.++.
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 K-LQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-ccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCC
Confidence 8 666665 478999999999999865 466654 6889999999987654
No 124
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=2.4e-11 Score=108.57 Aligned_cols=102 Identities=29% Similarity=0.444 Sum_probs=89.0
Q ss_pred eEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEeccCC
Q 013724 272 LVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLDLEDC 349 (437)
Q Consensus 272 L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n 349 (437)
-+.+++++|. ++.+|..+. ++|+.|+|++|.+.+..|. +.++++|++|+|++|+|+.+|.. +..+++|+.|+|++|
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCC-CCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3689999998 788998763 8999999999987776676 89999999999999999999876 589999999999999
Q ss_pred CCCCCCccc-cCCCCCCCEEeeeCCCCC
Q 013724 350 KSLKSLPSG-LCKLKSLKYLTLNGCSIL 376 (437)
Q Consensus 350 ~~l~~LP~~-l~~L~~L~~L~Ls~c~~l 376 (437)
. +..+|.. +..+++|++|+|++|+..
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred c-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 8 7777765 899999999999998754
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=2e-11 Score=128.91 Aligned_cols=128 Identities=16% Similarity=0.256 Sum_probs=92.4
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN 324 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls 324 (437)
.|+.|++++|...+ .+. .+++|+.|+|++|. ++.+|. .+++|+.|+|++|.+.. +|.+. ++|+.|+|+
T Consensus 121 ~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~L~~-lp~l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE-----LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNNQLTF-LPELP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC-----cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCCCCCC-cchhh--CCCCEEECc
Confidence 67778888776544 222 46788888888887 555776 56788888888876544 66644 788888888
Q ss_pred CCCCcccChhhcCCCCC-------CEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCC
Q 013724 325 GTAIEELPSSIECLYKL-------LHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILP 388 (437)
Q Consensus 325 ~n~l~~lp~~i~~L~~L-------~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~ 388 (437)
+|.|+.+|. +.. +| +.|+|++|. ++.+|..+..+++|+.|+|++|+..+.+|..+..+..
T Consensus 189 ~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 189 TNLLESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SSCCSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCCCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 888888877 544 66 888888877 6778887777888888888888887888877766543
No 126
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=7.1e-11 Score=104.94 Aligned_cols=105 Identities=25% Similarity=0.283 Sum_probs=89.8
Q ss_pred ceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEeccC
Q 013724 271 TLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLDLED 348 (437)
Q Consensus 271 ~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~L~~ 348 (437)
..+.|++++|. ++.+|..+ .++|++|+|++|.+.+..|. |..+++|++|+|++|+|+.+|+. +..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCC-cCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35689999998 78898776 48899999999987776676 89999999999999999998875 58999999999999
Q ss_pred CCCCCCCcc-ccCCCCCCCEEeeeCCCCCCc
Q 013724 349 CKSLKSLPS-GLCKLKSLKYLTLNGCSILQR 378 (437)
Q Consensus 349 n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~ 378 (437)
|. +..+|. .+..+++|++|+|++|+....
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 98 666765 589999999999999886543
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=2.4e-11 Score=128.39 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=100.0
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFL 323 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L 323 (437)
.|+.|++++|...+ . |. +..+++|+.|+|++|. +..+|..+ .+++|+.|+|++|.+.+ +|.++.+++|+.|+|
T Consensus 442 ~L~~L~Ls~n~l~~-l--p~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-L--CH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-C--CC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-C--cC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEEC
Confidence 46678888886544 3 33 7789999999999998 66999988 99999999999987655 788999999999999
Q ss_pred eCCCCccc--ChhhcCCCCCCEEeccCCCCCCCCcccc----CCCCCCCEEee
Q 013724 324 NGTAIEEL--PSSIECLYKLLHLDLEDCKSLKSLPSGL----CKLKSLKYLTL 370 (437)
Q Consensus 324 s~n~l~~l--p~~i~~L~~L~~L~L~~n~~l~~LP~~l----~~L~~L~~L~L 370 (437)
++|.|+.+ |..++.|++|+.|+|++|. +..+|..+ ..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 99999987 8999999999999999999 66665543 34788888864
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.18 E-value=2.6e-10 Score=121.70 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=47.5
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeC
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNG 325 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~ 325 (437)
++.+++++++.. ..+. .+. ++|+.|+|++|. ++.+|. .+++|++|+|++|.+ ..+|. .+++|++|+|++
T Consensus 42 l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQL-TSLPV--LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCCC-SCCCC--CCTTCCEEEECS
T ss_pred CcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCcC-CcCCC--CCCCCCEEECcC
Confidence 455666665443 2221 111 566666666665 555555 456666666666643 33444 455566666666
Q ss_pred CCCcccChhhcCCCCCCEEeccCCC
Q 013724 326 TAIEELPSSIECLYKLLHLDLEDCK 350 (437)
Q Consensus 326 n~l~~lp~~i~~L~~L~~L~L~~n~ 350 (437)
|.|+.+|. .+++|+.|++++|+
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~ 132 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQ 132 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSC
T ss_pred CcCCCCCC---CCCCcCEEECCCCC
Confidence 65555544 33444444444443
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.18 E-value=2e-10 Score=118.14 Aligned_cols=136 Identities=17% Similarity=0.156 Sum_probs=81.5
Q ss_pred hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN 324 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls 324 (437)
.|+.|++++|...+ .+ .+..+++|++|++++|. +..+|.. ..+|++|++++|.+.+ +|.+..+++|+.|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp---~~~~l~~L~~L~l~~N~-l~~lp~~--~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP---ELQNSSFLKIIDVDNNS-LKKLPDL--PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC---CCTTCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc---ccCCCCCCCEEECCCCc-CcccCCC--cccccEEECcCCcCCc-CccccCCCCCCEEECC
Confidence 56666666665443 22 25566777777777776 4455543 3467777777765433 5667777777777777
Q ss_pred CCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724 325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 325 ~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
+|.++.+|... ++|+.|++++|. +..+|. ++.+++|++|++++|.. ..+|.. +.+|+.|++.+|
T Consensus 204 ~N~l~~l~~~~---~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~N 267 (454)
T 1jl5_A 204 NNSLKKLPDLP---LSLESIVAGNNI-LEELPE-LQNLPFLTTIYADNNLL-KTLPDL---PPSLEALNVRDN 267 (454)
T ss_dssp SSCCSSCCCCC---TTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSCC-SSCCSC---CTTCCEEECCSS
T ss_pred CCcCCcCCCCc---CcccEEECcCCc-CCcccc-cCCCCCCCEEECCCCcC-Cccccc---ccccCEEECCCC
Confidence 77776665432 466667776665 456663 66677777777766543 335532 245555554433
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.17 E-value=2.1e-10 Score=117.93 Aligned_cols=138 Identities=22% Similarity=0.294 Sum_probs=105.8
Q ss_pred HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEE
Q 013724 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~ 322 (437)
..|+.|++++|...+... . .++|++|++++|. +..+|. + .+++|++|++++|.+. .+|.. +.+|++|+
T Consensus 111 ~~L~~L~l~~n~l~~l~~---~---~~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~N~l~-~lp~~--~~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD---L---PPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNSLK-KLPDL--PPSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSCCSCCCS---C---CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSCCS-CCCCC--CTTCCEEE
T ss_pred CCCcEEECCCCccCcccC---C---CCCCCEEECcCCC-CCCCcc-cCCCCCCCEEECCCCcCc-ccCCC--cccccEEE
Confidence 457777887765443111 1 2688999999998 556884 5 8899999999998654 46653 35899999
Q ss_pred eeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 323 Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+++|.++.+| .++.+++|+.|++++|. +..+|... ++|++|++++|.. ..+| .++.+++|+.|++.++..
T Consensus 180 L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~n~l-~~lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 180 AGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLP---LSLESIVAGNNIL-EELP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp CCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCC---TTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCC
T ss_pred CcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCc---CcccEEECcCCcC-Cccc-ccCCCCCCCEEECCCCcC
Confidence 9999999887 68999999999999988 66677643 5899999999864 4888 489999999999877643
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.15 E-value=2e-10 Score=122.60 Aligned_cols=117 Identities=21% Similarity=0.192 Sum_probs=83.6
Q ss_pred cCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccC
Q 013724 269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED 348 (437)
Q Consensus 269 l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~ 348 (437)
+++|+.|++++|. +..+|.. +++|+.|++++|.+ ..+|. .+++|+.|+|++|.|+.+| ..+++|+.|+|++
T Consensus 180 ~~~L~~L~Ls~N~-l~~l~~~--~~~L~~L~L~~N~l-~~l~~--~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 180 PSGLQELSVSDNQ-LASLPTL--PSELYKLWAYNNRL-TSLPA--LPSGLKELIVSGNRLTSLP---VLPSELKELMVSG 250 (622)
T ss_dssp CTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCC-SSCCC--CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCS
T ss_pred CCCCcEEECCCCC-CCCCCCc--cchhhEEECcCCcc-cccCC--CCCCCCEEEccCCccCcCC---CCCCcCcEEECCC
Confidence 3566666666666 4445542 35666666666543 34443 2477888888888888887 4567888888888
Q ss_pred CCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724 349 CKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 349 n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
|. ++.+|. .+++|+.|+|++|.+ ..+|..+.++++|+.|++.++..
T Consensus 251 N~-L~~lp~---~~~~L~~L~Ls~N~L-~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 251 NR-LTSLPM---LPSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp SC-CSCCCC---CCTTCCEEECCSSCC-CSCCGGGGGSCTTCEEECCSCCC
T ss_pred CC-CCcCCc---ccccCcEEeCCCCCC-CcCCHHHhhccccCEEEecCCCC
Confidence 87 777877 567888999988754 48888888889999888876543
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=5.7e-13 Score=121.27 Aligned_cols=112 Identities=20% Similarity=0.150 Sum_probs=95.0
Q ss_pred CCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCC
Q 013724 284 KSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKL 362 (437)
Q Consensus 284 ~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L 362 (437)
..+|..+ .+++|++|+|++|.+.. +|.+..+++|++|+|++|.|+.+|..+..+++|+.|++++|. ++.+| .+..+
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l 114 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKL 114 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccC
Confidence 3444466 89999999999987554 778888999999999999999999988889999999999998 77787 68899
Q ss_pred CCCCEEeeeCCCCCCccc--hhccCCCCCceeecccccc
Q 013724 363 KSLKYLTLNGCSILQRLN--FDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 363 ~~L~~L~Ls~c~~l~~lP--~~l~~L~~L~~L~~~~~~~ 399 (437)
++|++|++++|.. ..+| ..+..+++|+.|++.++..
T Consensus 115 ~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 115 VNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCcc
Confidence 9999999999864 4554 3789999999999877644
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.13 E-value=2.4e-12 Score=129.01 Aligned_cols=183 Identities=16% Similarity=0.085 Sum_probs=125.8
Q ss_pred HhhhhhhcccCcccCCC--CCCccccccCceEEEeccCCCCCCC----cCccC-CC---------CCccEEeeeCCCCC-
Q 013724 244 NALKEKIISACNIFTKT--PNPSFSQHLNTLVVLNLRDCKSLKS----LPAGI-HL---------EFLKELDLSGCSKL- 306 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~~l~~----lp~~~-~l---------~~L~~L~Ls~n~~~- 306 (437)
..|+.|+|++|...... ..+..+..+++|++|+|++|.+... ++..+ .+ ++|++|+|++|.+.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 35677888887654321 1122456788999999999984222 22222 33 89999999998765
Q ss_pred CCCC---C-CCCCCCCCEEEeeCCCCc------ccChhhcCCCCCCEEeccCCCCC----CCCccccCCCCCCCEEeeeC
Q 013724 307 KRLP---D-ISSAANIEEMFLNGTAIE------ELPSSIECLYKLLHLDLEDCKSL----KSLPSGLCKLKSLKYLTLNG 372 (437)
Q Consensus 307 ~~lp---~-l~~l~~L~~L~Ls~n~l~------~lp~~i~~L~~L~~L~L~~n~~l----~~LP~~l~~L~~L~~L~Ls~ 372 (437)
..+| . +..+++|+.|+|++|.|. -+|..+..+++|+.|+|++|... ..+|..+..+++|++|+|++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 3444 2 567889999999999988 23337888999999999999842 66888888999999999999
Q ss_pred CCCCCc----cchhc--cCCCCCceeecccccchhhc--cccccC-CCcccccccccCCCCCC
Q 013724 373 CSILQR----LNFDI--WSILPLVLTTFIYVYKFFVE--TSAASG-DDWKSAFDAAADGPVKP 426 (437)
Q Consensus 373 c~~l~~----lP~~l--~~L~~L~~L~~~~~~~~~~~--~~~~~~-~~~~~l~~~~~s~~~~~ 426 (437)
|..... +|..+ +.+++|+.|++.+|...... ..+... ..++.++.+..+++.+.
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 886654 56777 44899999998777544311 112222 23566777777776655
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.12 E-value=1.9e-12 Score=129.82 Aligned_cols=157 Identities=13% Similarity=0.067 Sum_probs=118.5
Q ss_pred HhhhhhhcccCcccCCCC--CCcccccc---------CceEEEeccCCCCC-CCcC---ccC-CCCCccEEeeeCCCCCC
Q 013724 244 NALKEKIISACNIFTKTP--NPSFSQHL---------NTLVVLNLRDCKSL-KSLP---AGI-HLEFLKELDLSGCSKLK 307 (437)
Q Consensus 244 ~aL~~L~Ls~~~~~~~~~--~~~~~~~l---------~~L~~L~Ls~n~~l-~~lp---~~~-~l~~L~~L~Ls~n~~~~ 307 (437)
..|+.|+|++|....... ....+..+ ++|++|++++|.+. ..++ ..+ .+++|+.|+|++|.+..
T Consensus 122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 201 (386)
T 2ca6_A 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH
Confidence 367889998886532111 01112233 89999999999843 3444 233 78899999999997552
Q ss_pred -----CCC-CCCCCCCCCEEEeeCCCC-----cccChhhcCCCCCCEEeccCCCCCCC----Ccccc--CCCCCCCEEee
Q 013724 308 -----RLP-DISSAANIEEMFLNGTAI-----EELPSSIECLYKLLHLDLEDCKSLKS----LPSGL--CKLKSLKYLTL 370 (437)
Q Consensus 308 -----~lp-~l~~l~~L~~L~Ls~n~l-----~~lp~~i~~L~~L~~L~L~~n~~l~~----LP~~l--~~L~~L~~L~L 370 (437)
.+| .+..+++|+.|+|++|.| ..+|..+..+++|+.|+|++|..... +|..+ +.+++|++|+|
T Consensus 202 ~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281 (386)
T ss_dssp HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEEC
Confidence 355 588899999999999999 56788899999999999999984333 56666 45999999999
Q ss_pred eCCCCCC----ccchhc-cCCCCCceeecccccch
Q 013724 371 NGCSILQ----RLNFDI-WSILPLVLTTFIYVYKF 400 (437)
Q Consensus 371 s~c~~l~----~lP~~l-~~L~~L~~L~~~~~~~~ 400 (437)
++|.... .+|..+ .++++|+.|++.+|...
T Consensus 282 ~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred cCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 9988666 489888 67899999998776543
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.12 E-value=2.1e-10 Score=113.58 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=86.1
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEE-eeeCCCCCCCCCC-CCCCCCCCEE
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKEL-DLSGCSKLKRLPD-ISSAANIEEM 321 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L-~Ls~n~~~~~lp~-l~~l~~L~~L 321 (437)
+++|+|++|... .++. ..+..+++|++|+|++|.+++.+|... .+++|+.+ .+.+|++....|. |..+++|++|
T Consensus 32 l~~L~Ls~N~i~-~i~~-~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 32 AIELRFVLTKLR-VIQK-GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp CSEEEEESCCCS-EECT-TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCEEEccCCcCC-CcCH-HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 445566555432 2221 223456666666666666445455433 45554443 3333332222233 5556666666
Q ss_pred EeeCCCCcccCh--------------------------hhcCC-CCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCC
Q 013724 322 FLNGTAIEELPS--------------------------SIECL-YKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCS 374 (437)
Q Consensus 322 ~Ls~n~l~~lp~--------------------------~i~~L-~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~ 374 (437)
++++|.|..+|. .+..+ ..|+.|+|++|. ++.+|..+...++|+.|++.+|+
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhccCC
Confidence 666555554432 12223 356777777777 67777766667778888888777
Q ss_pred CCCccchh-ccCCCCCceeeccccc
Q 013724 375 ILQRLNFD-IWSILPLVLTTFIYVY 398 (437)
Q Consensus 375 ~l~~lP~~-l~~L~~L~~L~~~~~~ 398 (437)
.++.+|.. +..+++|+.|++.++.
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSC
T ss_pred cccCCCHHHhccCcccchhhcCCCC
Confidence 78888754 6788888888876554
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.00 E-value=3.5e-10 Score=111.94 Aligned_cols=106 Identities=22% Similarity=0.242 Sum_probs=48.1
Q ss_pred cccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCC-CCCEEEeeCCCCcccChhhcCCCCC
Q 013724 267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAA-NIEEMFLNGTAIEELPSSIECLYKL 341 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~-~L~~L~Ls~n~l~~lp~~i~~L~~L 341 (437)
..+++|++|++++|. +..+|... ....+..|++.++..+..+|. +..+. .|+.|+|++|+|+.+|..+....+|
T Consensus 101 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 101 QNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179 (350)
T ss_dssp CCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred hhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence 344555555555554 33333322 333344444444333333332 33322 3455555555555555544444455
Q ss_pred CEEeccCCCCCCCCccc-cCCCCCCCEEeeeCC
Q 013724 342 LHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGC 373 (437)
Q Consensus 342 ~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c 373 (437)
+.|++.+|+.++.+|.. +..+++|++|+|++|
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 55555444445555432 345555555555544
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=3.6e-09 Score=93.83 Aligned_cols=100 Identities=27% Similarity=0.358 Sum_probs=82.1
Q ss_pred CccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEee
Q 013724 294 FLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTL 370 (437)
Q Consensus 294 ~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~L 370 (437)
..+.|++++|. +..+|. + .++|++|+|++|.|+.+ |..+..+++|+.|+|++|. +..+|.. +..+++|++|+|
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence 35789999975 555775 5 38899999999999988 5678999999999999998 6677655 689999999999
Q ss_pred eCCCCCCccchhccCCCCCceeecccc
Q 013724 371 NGCSILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 371 s~c~~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
++|.+.+-.+..+..+++|+.|++.+.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 998755433446899999999998664
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=3.6e-09 Score=94.30 Aligned_cols=99 Identities=22% Similarity=0.342 Sum_probs=82.7
Q ss_pred ccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeee
Q 013724 295 LKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLN 371 (437)
Q Consensus 295 L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls 371 (437)
-+.+++++|. ++.+|. +. ++|+.|+|++|.|+.+ |..+..+++|+.|+|++|+ +..+|.. +..+++|++|+|+
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence 3789999875 567776 54 8999999999999987 5678999999999999998 7778765 5899999999999
Q ss_pred CCCCCCccchh-ccCCCCCceeeccccc
Q 013724 372 GCSILQRLNFD-IWSILPLVLTTFIYVY 398 (437)
Q Consensus 372 ~c~~l~~lP~~-l~~L~~L~~L~~~~~~ 398 (437)
+|.+ ..+|.. +..+++|+.|++.++.
T Consensus 90 ~N~l-~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 DNHL-KSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SSCC-CCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCcc-ceeCHHHhccccCCCEEEeCCCC
Confidence 9765 466654 8999999999986643
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=2.4e-09 Score=105.38 Aligned_cols=101 Identities=19% Similarity=0.143 Sum_probs=68.7
Q ss_pred EEeccCCCCCCCcCccC-CCCCccEEeeeC-CCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCC
Q 013724 274 VLNLRDCKSLKSLPAGI-HLEFLKELDLSG-CSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDC 349 (437)
Q Consensus 274 ~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~-n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n 349 (437)
.++.++++.+..+|. + .+++|+.|+|++ |.+....+. |..|++|+.|+|++|.|+.+|+ .|..|++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 346666622667777 6 777888888875 544433333 7778888888888888886654 5677888888888887
Q ss_pred CCCCCCccccCCCCCCCEEeeeCCCCC
Q 013724 350 KSLKSLPSGLCKLKSLKYLTLNGCSIL 376 (437)
Q Consensus 350 ~~l~~LP~~l~~L~~L~~L~Ls~c~~l 376 (437)
. +..+|..+.....|+.|+|.+|+..
T Consensus 91 ~-l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred c-cceeCHHHcccCCceEEEeeCCCcc
Confidence 7 6666655433333888888877644
No 140
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.91 E-value=8.1e-11 Score=117.04 Aligned_cols=153 Identities=16% Similarity=0.097 Sum_probs=94.3
Q ss_pred hhhhhhcccCcccCCCCCCcccccc-----CceEEEeccCCCCCCCcCccC-----CC-CCccEEeeeCCCCCCCCCC--
Q 013724 245 ALKEKIISACNIFTKTPNPSFSQHL-----NTLVVLNLRDCKSLKSLPAGI-----HL-EFLKELDLSGCSKLKRLPD-- 311 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~~~~~~l-----~~L~~L~Ls~n~~l~~lp~~~-----~l-~~L~~L~Ls~n~~~~~lp~-- 311 (437)
.|+.|++++|......+ ..+..+ ++|++|+|++|.+....+..+ .+ ++|+.|+|++|.+....+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 129 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNS--DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129 (362)
T ss_dssp TCCEEECCSSCGGGSCH--HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred ceeEEECcCCCCCHHHH--HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence 56777787775543221 112222 778888888887333333322 34 7888888888775443332
Q ss_pred ---CCC-CCCCCEEEeeCCCCc-----ccChhhcCCC-CCCEEeccCCCCCCCCcc----ccCCC-CCCCEEeeeCCCCC
Q 013724 312 ---ISS-AANIEEMFLNGTAIE-----ELPSSIECLY-KLLHLDLEDCKSLKSLPS----GLCKL-KSLKYLTLNGCSIL 376 (437)
Q Consensus 312 ---l~~-l~~L~~L~Ls~n~l~-----~lp~~i~~L~-~L~~L~L~~n~~l~~LP~----~l~~L-~~L~~L~Ls~c~~l 376 (437)
+.. ..+|++|+|++|.|. .++..+..++ +|+.|+|++|......+. .+..+ ++|++|+|++|...
T Consensus 130 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 333 357888888888877 3455556665 888888888873333332 23444 58888888887643
Q ss_pred C----ccchhccCC-CCCceeecccccc
Q 013724 377 Q----RLNFDIWSI-LPLVLTTFIYVYK 399 (437)
Q Consensus 377 ~----~lP~~l~~L-~~L~~L~~~~~~~ 399 (437)
. .++..+..+ ++|+.|++.++..
T Consensus 210 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 210 LKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp GSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred hhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 3 266666654 4788888766543
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.91 E-value=7.4e-11 Score=124.27 Aligned_cols=150 Identities=15% Similarity=0.040 Sum_probs=85.9
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCC----cCccC-CCCCccEEeeeCCCCCC----CCCC-CCCC
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS----LPAGI-HLEFLKELDLSGCSKLK----RLPD-ISSA 315 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~----lp~~~-~l~~L~~L~Ls~n~~~~----~lp~-l~~l 315 (437)
|+.|++++|........+.....+++|++|+|++|.+.+. ++... .+++|+.|+|++|.... .++. +.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 7777777776332222222234577888888888863332 22222 67788888888776541 2233 4567
Q ss_pred CCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCC--------------------------CCCCccccCCCCCCCEEe
Q 013724 316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKS--------------------------LKSLPSGLCKLKSLKYLT 369 (437)
Q Consensus 316 ~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~--------------------------l~~LP~~l~~L~~L~~L~ 369 (437)
++|+.|+|++|.+..+|..+..+++|+.|+++.+.. ...+|..+..+++|++|+
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence 788888888877777777777777777777764321 233444444555555566
Q ss_pred eeCCCCCCc-cchhccCCCCCceeecc
Q 013724 370 LNGCSILQR-LNFDIWSILPLVLTTFI 395 (437)
Q Consensus 370 Ls~c~~l~~-lP~~l~~L~~L~~L~~~ 395 (437)
|++|..... ++..+..+++|+.|++.
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 655552222 12234555555555543
No 142
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.83 E-value=7.7e-11 Score=120.21 Aligned_cols=130 Identities=19% Similarity=0.217 Sum_probs=57.1
Q ss_pred hhhhhhcccCcccCCC--CCCccccccCceEEEeccCCCCCCCcCccC--CCC----CccEEeeeCCCCCC----CCCC-
Q 013724 245 ALKEKIISACNIFTKT--PNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLE----FLKELDLSGCSKLK----RLPD- 311 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~----~L~~L~Ls~n~~~~----~lp~- 311 (437)
.|+.|++++|...... ..+..+..+++|++|++++|.+....+..+ .++ +|++|+|++|.+.. .++.
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 4555666655432110 011123344556666666655222112111 233 46666666654332 2233
Q ss_pred CCCCCCCCEEEeeCCCCccc-Chhh-----cCCCCCCEEeccCCCCCC----CCccccCCCCCCCEEeeeCCC
Q 013724 312 ISSAANIEEMFLNGTAIEEL-PSSI-----ECLYKLLHLDLEDCKSLK----SLPSGLCKLKSLKYLTLNGCS 374 (437)
Q Consensus 312 l~~l~~L~~L~Ls~n~l~~l-p~~i-----~~L~~L~~L~L~~n~~l~----~LP~~l~~L~~L~~L~Ls~c~ 374 (437)
+..+++|++|+|++|.+... +..+ ..+++|+.|++++|.... .++..+..+++|++|++++|.
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 55555666666666555421 1111 113445555555554221 123334444555555555544
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=1.3e-08 Score=100.04 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=79.5
Q ss_pred EEeeeCCCCCCCCCCCCCCCCCCEEEeeC-CCCcccC-hhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCC
Q 013724 297 ELDLSGCSKLKRLPDISSAANIEEMFLNG-TAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCS 374 (437)
Q Consensus 297 ~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~-n~l~~lp-~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~ 374 (437)
.+++++++.+..+|.+..+++|+.|+|++ |.|+.+| ..|+.|++|+.|+|++|...+..|..|.+|++|+.|+|++|.
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 46777763566688888899999999996 9999887 578999999999999998444445678999999999999976
Q ss_pred CCCccchhccCCCCCceeecccc
Q 013724 375 ILQRLNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 375 ~l~~lP~~l~~L~~L~~L~~~~~ 397 (437)
+..+|..+.....|+.|++.++
T Consensus 92 -l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 92 -LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp -CSCCCSTTTCSCCCCEEECCSS
T ss_pred -cceeCHHHcccCCceEEEeeCC
Confidence 4567655444344999988543
No 144
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.79 E-value=1.2e-10 Score=118.92 Aligned_cols=151 Identities=19% Similarity=0.139 Sum_probs=108.6
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCC-----CcCccC-CCCCccEEeeeCCCCCCCCC-C-CCCCC-
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLK-----SLPAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAA- 316 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~-----~lp~~~-~l~~L~~L~Ls~n~~~~~lp-~-l~~l~- 316 (437)
|+.|+++++.... ......+..+++|++|++++|. ++ .++..+ .+++|++|+|++|.+....+ . ...+.
T Consensus 5 l~~L~Ls~~~l~~-~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 5 IQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEESCCCCH-HHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ceehhhhhcccCc-hhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5667777665432 2222335678999999999998 54 345555 78999999999987544222 1 22344
Q ss_pred ---CCCEEEeeCCCCc-----ccChhhcCCCCCCEEeccCCCCCCCCcc----c-cCCCCCCCEEeeeCCCCCC----cc
Q 013724 317 ---NIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCKSLKSLPS----G-LCKLKSLKYLTLNGCSILQ----RL 379 (437)
Q Consensus 317 ---~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~n~~l~~LP~----~-l~~L~~L~~L~Ls~c~~l~----~l 379 (437)
+|++|+|++|.|. .+|..+..+++|+.|+|++|.....-+. . ....++|++|++++|.... .+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 7999999999998 4688899999999999999983222222 2 2346789999999997655 35
Q ss_pred chhccCCCCCceeeccccc
Q 013724 380 NFDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 380 P~~l~~L~~L~~L~~~~~~ 398 (437)
+..+..+++|+.|++.++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHCTTCCEEECCSSB
T ss_pred HHHHhhCCCCCEEECcCCC
Confidence 6677788999999987765
No 145
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.76 E-value=1.5e-09 Score=107.91 Aligned_cols=156 Identities=14% Similarity=0.077 Sum_probs=111.0
Q ss_pred hhhhhhcccCcccCCCCCC--ccccccC-ceEEEeccCCCCCCCcCccC-CC-----CCccEEeeeCCCCCCCCCC----
Q 013724 245 ALKEKIISACNIFTKTPNP--SFSQHLN-TLVVLNLRDCKSLKSLPAGI-HL-----EFLKELDLSGCSKLKRLPD---- 311 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~~~~~--~~~~~l~-~L~~L~Ls~n~~l~~lp~~~-~l-----~~L~~L~Ls~n~~~~~lp~---- 311 (437)
.|+.|++++|......... ..+..++ +|++|+|++|.+....+..+ .+ ++|++|+|++|.+....+.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 4888999998754332100 2345577 89999999998444334444 32 8999999999986655554
Q ss_pred -CCCC-CCCCEEEeeCCCCcccCh-h----hcC-CCCCCEEeccCCCCCC----CCccccCCCC-CCCEEeeeCCCCCCc
Q 013724 312 -ISSA-ANIEEMFLNGTAIEELPS-S----IEC-LYKLLHLDLEDCKSLK----SLPSGLCKLK-SLKYLTLNGCSILQR 378 (437)
Q Consensus 312 -l~~l-~~L~~L~Ls~n~l~~lp~-~----i~~-L~~L~~L~L~~n~~l~----~LP~~l~~L~-~L~~L~Ls~c~~l~~ 378 (437)
+..+ ++|++|+|++|.|+..+. . +.. .++|+.|+|++|.... .++..+..++ +|++|+|++|.....
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 4444 899999999999996653 2 344 3699999999998332 4555566666 999999999986665
Q ss_pred cchh----ccCC-CCCceeecccccch
Q 013724 379 LNFD----IWSI-LPLVLTTFIYVYKF 400 (437)
Q Consensus 379 lP~~----l~~L-~~L~~L~~~~~~~~ 400 (437)
.+.. +..+ ++|+.|++.+|...
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 5544 4455 59999999877644
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=5.9e-08 Score=94.94 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=51.7
Q ss_pred CCCCCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccch-hccCCCCCc-eeecccccchhhccccccCCCccc
Q 013724 338 LYKLLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNF-DIWSILPLV-LTTFIYVYKFFVETSAASGDDWKS 414 (437)
Q Consensus 338 L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~-~l~~L~~L~-~L~~~~~~~~~~~~~~~~~~~~~~ 414 (437)
+++|+.|+|.+|. +..+|. .+.+|++|+.|+|..| +..++. .|..+.+|+ .+.+.. ............+..
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~---~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA---SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT---TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc---cceEEchhhhhCCcc
Confidence 6677777777766 666664 3677777777777765 556653 467777777 776533 222333344555666
Q ss_pred ccccccCCCCCC
Q 013724 415 AFDAAADGPVKP 426 (437)
Q Consensus 415 l~~~~~s~~~~~ 426 (437)
|+.+...++.+.
T Consensus 299 L~~l~l~~n~i~ 310 (329)
T 3sb4_A 299 LRYVLATGDKIT 310 (329)
T ss_dssp EEEEEECSSCCC
T ss_pred CCEEEeCCCccC
Confidence 777766555444
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=1.1e-09 Score=109.69 Aligned_cols=161 Identities=14% Similarity=0.060 Sum_probs=106.2
Q ss_pred HHHHHHHhhhhhhcccCcccCCCCC--Cccc-cccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-
Q 013724 238 KLQTWRNALKEKIISACNIFTKTPN--PSFS-QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311 (437)
Q Consensus 238 ~l~~W~~aL~~L~Ls~~~~~~~~~~--~~~~-~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~- 311 (437)
.+..-...|+.|++++|........ ...+ ....+|+.|+|++|.+...-...+ .+++|+.|+|++|.+...-..
T Consensus 66 l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 66 FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 3444455677788888764321110 0011 123689999999997322222222 567899999999865432111
Q ss_pred C-----CCCCCCCEEEeeCCCCcc-----cChhhcCCCCCCEEeccCCCCCCC-----CccccCCCCCCCEEeeeCCCCC
Q 013724 312 I-----SSAANIEEMFLNGTAIEE-----LPSSIECLYKLLHLDLEDCKSLKS-----LPSGLCKLKSLKYLTLNGCSIL 376 (437)
Q Consensus 312 l-----~~l~~L~~L~Ls~n~l~~-----lp~~i~~L~~L~~L~L~~n~~l~~-----LP~~l~~L~~L~~L~Ls~c~~l 376 (437)
+ ...++|+.|+|++|.|+. ++..+..+++|++|+|++|. ++. ++..+..+++|++|+|++|.+.
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 2 346789999999998863 55566788899999999988 443 4556777888999999998764
Q ss_pred C----ccchhccCCCCCceeecccccc
Q 013724 377 Q----RLNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 377 ~----~lP~~l~~L~~L~~L~~~~~~~ 399 (437)
. .++..+...++|+.|++.+|..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 3 3555666778899999877653
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.64 E-value=7.4e-10 Score=116.50 Aligned_cols=106 Identities=23% Similarity=0.256 Sum_probs=56.4
Q ss_pred ccCceEEEeccCCCCCCC--cCccC-CCCCccEEeeeCCCCCCC----CCC-CCCCCCCCEEEeeCCC--Cc--ccChhh
Q 013724 268 HLNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGCSKLKR----LPD-ISSAANIEEMFLNGTA--IE--ELPSSI 335 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~--lp~~~-~l~~L~~L~Ls~n~~~~~----lp~-l~~l~~L~~L~Ls~n~--l~--~lp~~i 335 (437)
.+++|++|++++|..++. ++... .+++|++|+|++|.+... ++. ...+++|+.|+|++|. +. .++..+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 456666666666632332 22222 566666666666653221 122 2245566666666654 22 222223
Q ss_pred cCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCC
Q 013724 336 ECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGC 373 (437)
Q Consensus 336 ~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c 373 (437)
..+++|+.|+|++|..++.+|..+..+++|++|++..|
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 44566666666666445555555666666666665443
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.60 E-value=3.2e-09 Score=111.74 Aligned_cols=105 Identities=12% Similarity=0.046 Sum_probs=50.9
Q ss_pred hhhhhhcccCcccCC--CCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCC---CCC-CCCCCCC
Q 013724 245 ALKEKIISACNIFTK--TPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK---RLP-DISSAAN 317 (437)
Q Consensus 245 aL~~L~Ls~~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~---~lp-~l~~l~~ 317 (437)
.|+.|+++++...+. ...+..+..+++|+.|++++|. +..+|..+ .+++|+.|+++++.... ..+ .+..+++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 455566655543211 0111223355666666666665 44455444 55666666665432221 111 1444555
Q ss_pred CCEEEeeCCCCcccChhhcCCCCCCEEeccCCC
Q 013724 318 IEEMFLNGTAIEELPSSIECLYKLLHLDLEDCK 350 (437)
Q Consensus 318 L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~ 350 (437)
|+.|+++++....+|..+..+++|+.|+|++|.
T Consensus 272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred ccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 555555554444455555555555555555554
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.45 E-value=1.1e-08 Score=107.54 Aligned_cols=131 Identities=11% Similarity=0.018 Sum_probs=82.2
Q ss_pred ccCceEEEeccCCCCCCCcCccC--CCCCccEEeee-----CCCCCCCCCC-------CCCCCCCCEEEeeCCCCc-ccC
Q 013724 268 HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLS-----GCSKLKRLPD-------ISSAANIEEMFLNGTAIE-ELP 332 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls-----~n~~~~~lp~-------l~~l~~L~~L~Ls~n~l~-~lp 332 (437)
.+++|+.|.+..|.+.......+ .+++|+.|+|+ +|..++..|. +..+++|+.|+|++ .++ ..+
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 46677777665555222222222 47888888888 4444554331 45577888888876 555 333
Q ss_pred hhhcC-CCCCCEEeccCCCCCCCCcccc-CCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeecccccc
Q 013724 333 SSIEC-LYKLLHLDLEDCKSLKSLPSGL-CKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 333 ~~i~~-L~~L~~L~L~~n~~l~~LP~~l-~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~~~~~ 399 (437)
..+.. +++|+.|+|++|.....-+..+ ..+++|+.|+|++|+.....+ ..+..+++|+.|++.+|..
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 44544 7888888888887333222233 567888888888888743333 2445578888888888765
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.38 E-value=8.7e-07 Score=86.53 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCC-EEeeeCCCCCCccc-hhccCCCCCc
Q 013724 315 AANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLK-YLTLNGCSILQRLN-FDIWSILPLV 390 (437)
Q Consensus 315 l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~-~L~Ls~c~~l~~lP-~~l~~L~~L~ 390 (437)
+++|+.|+|++|+++.||. .|..|++|+.|+|.+| +..++. .+.+|++|+ .|++.. .+..++ ..|..+.+|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 5677888888777777765 4677778888888775 555654 467777787 787765 355554 5577777777
Q ss_pred eeec
Q 013724 391 LTTF 394 (437)
Q Consensus 391 ~L~~ 394 (437)
.+++
T Consensus 301 ~l~l 304 (329)
T 3sb4_A 301 YVLA 304 (329)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7765
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.34 E-value=1.2e-08 Score=102.22 Aligned_cols=156 Identities=15% Similarity=0.052 Sum_probs=106.3
Q ss_pred cCceEEEeccCCCCCCCcC-ccC------CCCCccEEeeeCCCCCCCC-CCC-CCCCCCCEEEeeCCCCccc-----Chh
Q 013724 269 LNTLVVLNLRDCKSLKSLP-AGI------HLEFLKELDLSGCSKLKRL-PDI-SSAANIEEMFLNGTAIEEL-----PSS 334 (437)
Q Consensus 269 l~~L~~L~Ls~n~~l~~lp-~~~------~l~~L~~L~Ls~n~~~~~l-p~l-~~l~~L~~L~Ls~n~l~~l-----p~~ 334 (437)
+++|+.|+|++|. ++... ..+ ..++|+.|+|++|.+...- ..+ ..+.+|+.|+|++|.|... ...
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4678999999998 44322 111 2369999999999754321 122 3467899999999999732 222
Q ss_pred h-cCCCCCCEEeccCCCCCCC-----CccccCCCCCCCEEeeeCCCCCC----ccchhccCCCCCceeecccccchhhcc
Q 013724 335 I-ECLYKLLHLDLEDCKSLKS-----LPSGLCKLKSLKYLTLNGCSILQ----RLNFDIWSILPLVLTTFIYVYKFFVET 404 (437)
Q Consensus 335 i-~~L~~L~~L~L~~n~~l~~-----LP~~l~~L~~L~~L~Ls~c~~l~----~lP~~l~~L~~L~~L~~~~~~~~~~~~ 404 (437)
+ ...++|+.|+|++|. ++. ++..+..+++|++|+|++|.... .++..+...++|+.|++.+|.......
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 3 346899999999998 543 55666789999999999987543 356777888999999998875432211
Q ss_pred c--cccCCCcccccccccCCCCCC
Q 013724 405 S--AASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 405 ~--~~~~~~~~~l~~~~~s~~~~~ 426 (437)
. .......+.++.+..+++.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHhCCCCCEEeccCCCCC
Confidence 1 111223345667777776654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=6.5e-07 Score=89.14 Aligned_cols=130 Identities=17% Similarity=0.172 Sum_probs=68.5
Q ss_pred ccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCC-CC--CCCCCCCEEEeeC--CC------CcccChh
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLP-DI--SSAANIEEMFLNG--TA------IEELPSS 334 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp-~l--~~l~~L~~L~Ls~--n~------l~~lp~~ 334 (437)
+..+|+|+.|+|++|..+ .++. +.+++|+.|+|..|.+....- .+ ..+++|+.|+|+. +. +..+...
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 345667777777766322 2333 346677777777654322111 12 2567777777652 11 2122222
Q ss_pred h--cCCCCCCEEeccCCCCCCCCcccc---CCCCCCCEEeeeCCCCCCc----cchhccCCCCCceeecccc
Q 013724 335 I--ECLYKLLHLDLEDCKSLKSLPSGL---CKLKSLKYLTLNGCSILQR----LNFDIWSILPLVLTTFIYV 397 (437)
Q Consensus 335 i--~~L~~L~~L~L~~n~~l~~LP~~l---~~L~~L~~L~Ls~c~~l~~----lP~~l~~L~~L~~L~~~~~ 397 (437)
+ ..+++|++|+|.+|......+..+ ..+++|++|+|+.|..... ++..+.++++|+.|++..|
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 2 246677777777766332222222 2466777777766543322 4444455677777776555
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=4.2e-06 Score=83.30 Aligned_cols=129 Identities=13% Similarity=0.085 Sum_probs=85.5
Q ss_pred cccCceEEEeccCCCC---------CCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCc-ccChhh
Q 013724 267 QHLNTLVVLNLRDCKS---------LKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIE-ELPSSI 335 (437)
Q Consensus 267 ~~l~~L~~L~Ls~n~~---------l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~-~lp~~i 335 (437)
..+++|+.|.+..... .+.+...+ .+++|+.|+|++|... .++.+. +++|+.|+|..+.+. .....+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHH
Confidence 3578888888865431 11233333 7899999999997433 344444 899999999998876 322344
Q ss_pred c--CCCCCCEEeccCC--CC-----CCCCcccc--CCCCCCCEEeeeCCCCCCccchhc---cCCCCCceeecccc
Q 013724 336 E--CLYKLLHLDLEDC--KS-----LKSLPSGL--CKLKSLKYLTLNGCSILQRLNFDI---WSILPLVLTTFIYV 397 (437)
Q Consensus 336 ~--~L~~L~~L~L~~n--~~-----l~~LP~~l--~~L~~L~~L~Ls~c~~l~~lP~~l---~~L~~L~~L~~~~~ 397 (437)
. .+++|+.|+|+.+ .. +..+...+ ..+++|++|+|.+|......+..+ ..+++|+.|++..+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 3 7899999998632 11 11222223 358999999999988665444333 35789999998654
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=4.4e-06 Score=79.49 Aligned_cols=58 Identities=26% Similarity=0.174 Sum_probs=26.3
Q ss_pred hhcCCCCCCEEeccCCCCCCCCccccCCCC--CCCEEeeeCCCCCCccc-------hhccCCCCCceee
Q 013724 334 SIECLYKLLHLDLEDCKSLKSLPSGLCKLK--SLKYLTLNGCSILQRLN-------FDIWSILPLVLTT 393 (437)
Q Consensus 334 ~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~--~L~~L~Ls~c~~l~~lP-------~~l~~L~~L~~L~ 393 (437)
.+..+++|+.|+|++|. +..+ ..+..++ +|++|+|++|+..+.+| ..+..+++|+.|+
T Consensus 191 ~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 191 IVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred HHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 33444455555555444 3332 1122222 55555555555444443 1244555555554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=4.2e-06 Score=79.69 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=70.0
Q ss_pred cCceEE--EeccCCCCCCCcCccC-----CCCCccEEeeeCCCCCC--CCCC-CCCCCCCCEEEeeCCCCcccChhhcCC
Q 013724 269 LNTLVV--LNLRDCKSLKSLPAGI-----HLEFLKELDLSGCSKLK--RLPD-ISSAANIEEMFLNGTAIEELPSSIECL 338 (437)
Q Consensus 269 l~~L~~--L~Ls~n~~l~~lp~~~-----~l~~L~~L~Ls~n~~~~--~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L 338 (437)
.+.|.. ++++.|. ...++..+ .+++|+.|+|++|.+.+ .+|. +..+++|+.|+|++|.|+.+ ..+..+
T Consensus 140 dp~L~~~~l~l~~N~-~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l 217 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNR-RSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKI 217 (267)
T ss_dssp CHHHHHTTCCCCTTS-HHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGG
T ss_pred CcchhhcCccccCCH-HHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhc
Confidence 344444 5556654 33344322 67899999999987655 3444 56789999999999999876 334555
Q ss_pred C--CCCEEeccCCCCCCCCcc-------ccCCCCCCCEEee
Q 013724 339 Y--KLLHLDLEDCKSLKSLPS-------GLCKLKSLKYLTL 370 (437)
Q Consensus 339 ~--~L~~L~L~~n~~l~~LP~-------~l~~L~~L~~L~L 370 (437)
. +|+.|+|.+|...+.+|. .+..+++|+.||=
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 5 899999999996665652 3677889998873
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=9.3e-06 Score=72.28 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=56.0
Q ss_pred CCccEEeeeCCCCCCC-CCCCCCCCCCCEEEeeCCC-Cc-ccChhhcCC----CCCCEEeccCCCCCCCCc-cccCCCCC
Q 013724 293 EFLKELDLSGCSKLKR-LPDISSAANIEEMFLNGTA-IE-ELPSSIECL----YKLLHLDLEDCKSLKSLP-SGLCKLKS 364 (437)
Q Consensus 293 ~~L~~L~Ls~n~~~~~-lp~l~~l~~L~~L~Ls~n~-l~-~lp~~i~~L----~~L~~L~L~~n~~l~~LP-~~l~~L~~ 364 (437)
..|+.|+|++|.+... +..+..+++|+.|+|+++. |+ .--..+..+ ++|+.|+|++|..++.-- ..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4677777777763321 2336677788888887763 55 222334443 478888888887665421 23567888
Q ss_pred CCEEeeeCCCCCCc
Q 013724 365 LKYLTLNGCSILQR 378 (437)
Q Consensus 365 L~~L~Ls~c~~l~~ 378 (437)
|++|+|++|+.++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888887664
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.90 E-value=0.00011 Score=74.03 Aligned_cols=152 Identities=11% Similarity=0.053 Sum_probs=85.1
Q ss_pred ccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeC-----------------
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNG----------------- 325 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~----------------- 325 (437)
+..|.+|+.+++.+|. +..++... .+.+|+.+.|..+ +..++. |.++++|+.++|..
T Consensus 176 F~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~ 252 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITT 252 (401)
T ss_dssp TTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSE
T ss_pred hhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCccccccccCCccE
Confidence 4557777777777765 55566554 5566666666532 333333 55555555555543
Q ss_pred ----CCCcccC-hhhcCCCCCCEEeccCCCCC----CCCc-cccCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeec
Q 013724 326 ----TAIEELP-SSIECLYKLLHLDLEDCKSL----KSLP-SGLCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTF 394 (437)
Q Consensus 326 ----n~l~~lp-~~i~~L~~L~~L~L~~n~~l----~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~ 394 (437)
+.++.++ ..|.+|++|+.+.+.+|... ..++ ..+.+|++|+.++|.. .+..++ ..|..+.+|+.+.+
T Consensus 253 i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 253 VKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEE
T ss_pred EEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEE
Confidence 2334442 34566777777777665421 1233 3466777777777763 255555 34666777777765
Q ss_pred ccccchhhccccccCCCcccccccccCCCCCC
Q 013724 395 IYVYKFFVETSAASGDDWKSAFDAAADGPVKP 426 (437)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~ 426 (437)
.. ............+ .|+.+...++..+
T Consensus 331 p~---~l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 331 PA---NVTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CT---TCCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred Cc---cccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 22 2222223334445 6666666665444
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.89 E-value=1.6e-06 Score=77.71 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=56.3
Q ss_pred cCceEEEeccCC-CCCCC-----cCccC-CCCCccEEeeeCCCCCCC----CCC-CCCCCCCCEEEeeCCCCcc-----c
Q 013724 269 LNTLVVLNLRDC-KSLKS-----LPAGI-HLEFLKELDLSGCSKLKR----LPD-ISSAANIEEMFLNGTAIEE-----L 331 (437)
Q Consensus 269 l~~L~~L~Ls~n-~~l~~-----lp~~~-~l~~L~~L~Ls~n~~~~~----lp~-l~~l~~L~~L~Ls~n~l~~-----l 331 (437)
.+.|++|+|++| . ++. +...+ ..++|++|+|++|.+... +.. +...++|++|+|++|.|.. +
T Consensus 35 ~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 456777777777 4 432 11122 456677777777653221 111 3344566666666666652 3
Q ss_pred ChhhcCCCCCCEEec--cCCCCCCC-----CccccCCCCCCCEEeeeCCC
Q 013724 332 PSSIECLYKLLHLDL--EDCKSLKS-----LPSGLCKLKSLKYLTLNGCS 374 (437)
Q Consensus 332 p~~i~~L~~L~~L~L--~~n~~l~~-----LP~~l~~L~~L~~L~Ls~c~ 374 (437)
...+...++|+.|+| ++|. ++. +...+...++|++|+|++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 445555666666666 5555 332 23334445666666666654
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.87 E-value=4.6e-06 Score=74.73 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=82.3
Q ss_pred CCCCccEEeeeCC-CCCCC----CCC-CCCCCCCCEEEeeCCCCcc-----cChhhcCCCCCCEEeccCCCCCCC-----
Q 013724 291 HLEFLKELDLSGC-SKLKR----LPD-ISSAANIEEMFLNGTAIEE-----LPSSIECLYKLLHLDLEDCKSLKS----- 354 (437)
Q Consensus 291 ~l~~L~~L~Ls~n-~~~~~----lp~-l~~l~~L~~L~Ls~n~l~~-----lp~~i~~L~~L~~L~L~~n~~l~~----- 354 (437)
..+.|+.|+|++| .+... +.. +...++|++|+|++|.|.. +...+...++|++|+|++|. ++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHH
Confidence 6789999999998 54321 222 6667899999999999972 45566777899999999998 554
Q ss_pred CccccCCCCCCCEEee--eCCCCCCc----cchhccCCCCCceeecccccc
Q 013724 355 LPSGLCKLKSLKYLTL--NGCSILQR----LNFDIWSILPLVLTTFIYVYK 399 (437)
Q Consensus 355 LP~~l~~L~~L~~L~L--s~c~~l~~----lP~~l~~L~~L~~L~~~~~~~ 399 (437)
+...+...++|++|+| ++|..... +...+...++|+.|++.+|..
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 5566788899999999 77765433 556667778999999876643
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=2e-05 Score=70.08 Aligned_cols=87 Identities=14% Similarity=0.071 Sum_probs=66.7
Q ss_pred CCCCEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCc-cccCCC----CCCCEEeeeCCCCCCc-cchhccCCCC
Q 013724 316 ANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLP-SGLCKL----KSLKYLTLNGCSILQR-LNFDIWSILP 388 (437)
Q Consensus 316 ~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L----~~L~~L~Ls~c~~l~~-lP~~l~~L~~ 388 (437)
.+|+.|||+++.|+ .--..+..|++|+.|+|++|..++.-- ..+..+ ++|++|+|++|..++. --..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 47999999999988 323567899999999999998776521 224443 4799999999986654 2235778999
Q ss_pred Cceeecccccchhh
Q 013724 389 LVLTTFIYVYKFFV 402 (437)
Q Consensus 389 L~~L~~~~~~~~~~ 402 (437)
|+.|++.+|.....
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 99999999986643
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.52 E-value=0.00049 Score=69.16 Aligned_cols=164 Identities=14% Similarity=0.127 Sum_probs=104.6
Q ss_pred hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEE
Q 013724 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (437)
Q Consensus 246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L 321 (437)
|+.+.+..+ +..+....|.. .+|+.+.+.. . +..++... .|++|+.++|.+|. +..+|. |. ..+|+.+
T Consensus 137 L~~i~l~~~--i~~I~~~aF~~--~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l 208 (401)
T 4fdw_A 137 IAKVVLNEG--LKSIGDMAFFN--STVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV-YAGIEEV 208 (401)
T ss_dssp CSEEECCTT--CCEECTTTTTT--CCCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT-TCCCSEE
T ss_pred ccEEEeCCC--ccEECHHhcCC--CCceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCc-ceEechhhEe-ecccCEE
Confidence 455554432 33333333333 3688888876 3 66676555 78889999998764 445554 44 5788998
Q ss_pred EeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeeccccc
Q 013724 322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFIYVY 398 (437)
Q Consensus 322 ~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~~~~ 398 (437)
.|.. .++.|+. .|.+|++|+.+.|.++ +..++.. +.+ .+|+.+.|.. .+..++ ..|.++.+|+.+.+....
T Consensus 209 ~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 209 LLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp ECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSC
T ss_pred EeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCcc
Confidence 8874 4777754 5778889999998764 5666654 444 7899999954 356664 568888999998874432
Q ss_pred ch---hhccccccCCCcccccccccCCC
Q 013724 399 KF---FVETSAASGDDWKSAFDAAADGP 423 (437)
Q Consensus 399 ~~---~~~~~~~~~~~~~~l~~~~~s~~ 423 (437)
.. ...........+..|+.+.....
T Consensus 283 ~~~~~~~~I~~~aF~~c~~L~~l~l~~~ 310 (401)
T 4fdw_A 283 FNDDPEAMIHPYCLEGCPKLARFEIPES 310 (401)
T ss_dssp CCCCTTCEECTTTTTTCTTCCEECCCTT
T ss_pred ccCCcccEECHHHhhCCccCCeEEeCCc
Confidence 21 01122334556677777766643
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.20 E-value=0.037 Score=54.25 Aligned_cols=119 Identities=11% Similarity=0.203 Sum_probs=76.0
Q ss_pred ccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCC
Q 013724 268 HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLL 342 (437)
Q Consensus 268 ~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~ 342 (437)
.+.+|+.+.+..+ +..++... .+..|+.+.+..+ +..++. +.++.+|+.+.+.. .+..++. .+..|.+|+
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 3455666666543 34444433 6677888777653 444443 66777888887754 3555554 567788888
Q ss_pred EEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccch-hccCCCCCceeec
Q 013724 343 HLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNF-DIWSILPLVLTTF 394 (437)
Q Consensus 343 ~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~-~l~~L~~L~~L~~ 394 (437)
.+.+.++. +..++ ..+.+|++|+.+.|.. .+..|.. .|.++.+|+.+.+
T Consensus 290 ~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 290 KVVMDNSA-IETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred cccccccc-cceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 88887655 56665 3467788888888854 2556653 4677777777664
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.02 E-value=0.02 Score=56.67 Aligned_cols=119 Identities=13% Similarity=0.171 Sum_probs=83.8
Q ss_pred ccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCC
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYK 340 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~ 340 (437)
+..+..|+.+.+..+. ..++... .+..|+.+.+.... ++. +..+.+|+.+.+..+ ++.++. .+..|.+
T Consensus 249 f~~~~~l~~~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~ 321 (394)
T 4fs7_A 249 FYGCTDLESISIQNNK--LRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS 321 (394)
T ss_dssp TTTCSSCCEEEECCTT--CEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ccccccceeEEcCCCc--ceeeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCC
Confidence 4457788888887653 3444433 77788887776532 343 777888999888754 666754 5778899
Q ss_pred CCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeecc
Q 013724 341 LLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFI 395 (437)
Q Consensus 341 L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~ 395 (437)
|+.++|.++ +..++ ..+.+|++|+.+++..+ +..++ ..|.++.+|+.+.+.
T Consensus 322 L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 322 LVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred CCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 999988643 56665 45788899999988654 56665 457888888888763
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.00 E-value=0.019 Score=56.98 Aligned_cols=99 Identities=9% Similarity=0.218 Sum_probs=61.0
Q ss_pred CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCC
Q 013724 291 HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLK 366 (437)
Q Consensus 291 ~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~ 366 (437)
.+..|+.+.+..+ ...++. +.++.+|+.+.+. +.++.++. .|..|.+|+.+.|.++ ++.+. ..+.+|++|+
T Consensus 263 ~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 263 SCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred ecccccEEecccc--cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCC
Confidence 5667777777543 223333 6667777777774 45556654 4666777777777543 45554 3467777777
Q ss_pred EEeeeCCCCCCccc-hhccCCCCCceeeccc
Q 013724 367 YLTLNGCSILQRLN-FDIWSILPLVLTTFIY 396 (437)
Q Consensus 367 ~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~~ 396 (437)
.+.|..+ +..+. ..|.++.+|+.+.+..
T Consensus 338 ~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 338 RIAIPSS--VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp EEEECTT--CCBCCGGGGTTCTTCCEEEESS
T ss_pred EEEECcc--cCEEhHhHhhCCCCCCEEEECC
Confidence 7777532 45554 3567777777776643
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.89 E-value=0.01 Score=49.67 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=15.3
Q ss_pred CCCEEEeeCCCCcccChh-hcCCCCCCEEeccCCC
Q 013724 317 NIEEMFLNGTAIEELPSS-IECLYKLLHLDLEDCK 350 (437)
Q Consensus 317 ~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n~ 350 (437)
+|+.|+|++|.|+.||.. +..+++|+.|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 344445554444444432 3334444444444443
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.58 E-value=0.03 Score=54.97 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=81.7
Q ss_pred ccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCC
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYK 340 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~ 340 (437)
+..+..|+.+.+..+ +..+.... .+..|+.+.+..+ +..++. |..+.+|+.+.+.++.++.|+. .+.+|.+
T Consensus 236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 345778888888765 56666555 7889999999753 555654 8889999999999999998864 6889999
Q ss_pred CCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccc
Q 013724 341 LLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLN 380 (437)
Q Consensus 341 L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP 380 (437)
|+.+.|..+ ++.++. .+.+|++|+.+.+..+ +..+.
T Consensus 312 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~--v~~I~ 348 (379)
T 4h09_A 312 LSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS--ITLIE 348 (379)
T ss_dssp CCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEEC
T ss_pred CCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc--cCEEc
Confidence 999999753 666654 5788999998888542 44443
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.36 E-value=0.011 Score=53.37 Aligned_cols=80 Identities=10% Similarity=0.185 Sum_probs=39.5
Q ss_pred CceEEEeccCCCCCCCc-----CccC-CCCCccEEeeeCCCCCCC----CCC-CCCCCCCCEEEeeCCCCc-----ccCh
Q 013724 270 NTLVVLNLRDCKSLKSL-----PAGI-HLEFLKELDLSGCSKLKR----LPD-ISSAANIEEMFLNGTAIE-----ELPS 333 (437)
Q Consensus 270 ~~L~~L~Ls~n~~l~~l-----p~~~-~l~~L~~L~Ls~n~~~~~----lp~-l~~l~~L~~L~Ls~n~l~-----~lp~ 333 (437)
+.|+.|+|++|+.++.- -..+ .-+.|+.|+|++|.+... +-+ +..-+.|+.|+|+.|.|. .|-.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 46777788765224321 1111 335667777776653211 111 223455666666666665 1223
Q ss_pred hhcCCCCCCEEeccCC
Q 013724 334 SIECLYKLLHLDLEDC 349 (437)
Q Consensus 334 ~i~~L~~L~~L~L~~n 349 (437)
.+..-+.|+.|+|++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 3444455666666543
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.80 E-value=0.0063 Score=54.86 Aligned_cols=105 Identities=21% Similarity=0.207 Sum_probs=70.1
Q ss_pred CCCCccEEeeeCCCCCCC-----CCC-CCCCCCCCEEEeeCCCCc-----ccChhhcCCCCCCEEeccCCCCCCC-----
Q 013724 291 HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCKSLKS----- 354 (437)
Q Consensus 291 ~l~~L~~L~Ls~n~~~~~-----lp~-l~~l~~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~n~~l~~----- 354 (437)
.-+.|+.|+|++|+.++. +-+ +..-..|+.|+|++|.|. .|-..+..-+.|+.|+|+.|. ++.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHH
Confidence 346788999987633432 112 555678999999999887 244456666889999999988 442
Q ss_pred CccccCCCCCCCEEeeeCCC--CCC-----ccchhccCCCCCceeeccc
Q 013724 355 LPSGLCKLKSLKYLTLNGCS--ILQ-----RLNFDIWSILPLVLTTFIY 396 (437)
Q Consensus 355 LP~~l~~L~~L~~L~Ls~c~--~l~-----~lP~~l~~L~~L~~L~~~~ 396 (437)
|-+.+..-+.|++|+|++|. .++ .+.+.+..=++|..|++..
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 33456666779999998653 344 2445555557788887643
No 170
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.73 E-value=0.045 Score=54.15 Aligned_cols=119 Identities=13% Similarity=0.236 Sum_probs=84.6
Q ss_pred ccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCC
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYK 340 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~ 340 (437)
+..+..|+.+.+..+. ..+.... .+..|+.+.+.. .+..+++ |.++.+|+.+.|.. .++.|.. .|.+|.+
T Consensus 261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTT
T ss_pred eeecccccEEeccccc--ceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCC
Confidence 4567888888887653 4555544 889999999974 3566665 88899999999976 4777754 6889999
Q ss_pred CCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724 341 LLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF 394 (437)
Q Consensus 341 L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~ 394 (437)
|+.+.|..+ +..++ ..+.+|++|+.+++.++.. . -..+.....|+.+.+
T Consensus 336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~--~-~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRS--Q-WNAISTDSGLQNLPV 385 (394)
T ss_dssp CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHH--H-HHTCBCCCCC-----
T ss_pred CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCcee--e-hhhhhccCCCCEEEe
Confidence 999999653 66775 4589999999999987532 1 234555666776654
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.63 E-value=0.2 Score=49.32 Aligned_cols=121 Identities=12% Similarity=0.157 Sum_probs=67.9
Q ss_pred ccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCC---------------
Q 013724 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGT--------------- 326 (437)
Q Consensus 266 ~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n--------------- 326 (437)
+.++.+|+.+.|..+ ++.++... .+.+|+.++|..+ +..++. |.++.+|+.+.+..+
T Consensus 67 F~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred hhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 445778888888643 56666554 7788888888653 444443 666666666554322
Q ss_pred ------CCccc-ChhhcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeec
Q 013724 327 ------AIEEL-PSSIECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTF 394 (437)
Q Consensus 327 ------~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~ 394 (437)
.+..+ ...+..+++|+.+.+.++ +..++. .+.++++|+.+++..+ +..++ ..+.+...|+.+.+
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeec
Confidence 11111 123556677777776543 233433 3566677777766543 34443 23555555655543
No 172
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=94.10 E-value=0.029 Score=45.65 Aligned_cols=63 Identities=6% Similarity=-0.084 Sum_probs=47.1
Q ss_pred CCCceeeccCCCcccCchHHHHHHHHhcCCceEEecCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHHhhhh
Q 013724 116 SYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQ 193 (437)
Q Consensus 116 ~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~~il~ 193 (437)
+.|.|||||..+|.+ +.|...|...|+..- . +.|+.+...|+..++.-..|.||..|+....+
T Consensus 3 ~~~~lFISh~~~d~~----~~L~~~l~~~~f~~~-~----------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~ 65 (111)
T 1eiw_A 3 AEIRLYITEGEVEDY----RVFLERLEQSGLEWR-P----------ATPEDADAVIVLAGLWGTRRDEILGAVDLARK 65 (111)
T ss_dssp CCEEEEECCCCSHHH----HHHHHHHHHHCSCEE-E----------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT
T ss_pred ceEEEEEecccHhHH----HHHHHHHhCCCCeee-c----------CccccCCEEEEEeCCCcCCChHHHHHHHHHHH
Confidence 478999999999933 344444445566542 2 67889999999999999999999999965443
No 173
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.80 E-value=0.099 Score=43.50 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=40.0
Q ss_pred EEeccCCCCCC--CcCccCCCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCc
Q 013724 274 VLNLRDCKSLK--SLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE 329 (437)
Q Consensus 274 ~L~Ls~n~~l~--~lp~~~~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~ 329 (437)
.++.+++. ++ .+|..+ -++|+.|+|++|.+. .+|. |..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~-L~~~~vP~~l-p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAF-PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSC-CCTTTSCSCC-CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCC-CccccCCCCC-CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 66777776 65 777654 346899999998644 4554 788999999999999775
No 174
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=72.53 E-value=1.1 Score=26.93 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=7.1
Q ss_pred HhhHhhhc
Q 013724 27 WMSQEVRE 34 (437)
Q Consensus 27 ~~~~~~~~ 34 (437)
|+|||.|-
T Consensus 7 wIAQELRR 14 (33)
T 1pq1_B 7 RIAQELRR 14 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999984
No 175
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=69.19 E-value=11 Score=33.11 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=36.7
Q ss_pred CCchHHHHHHHHHhcceEEEEecCccccccccHhhHHhhh
Q 013724 153 GDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKIL 192 (437)
Q Consensus 153 g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~~il 192 (437)
-..|-..|.+.|..|+..|+++|++...+.|-..|+...+
T Consensus 66 e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai 105 (189)
T 3hyn_A 66 EKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGI 105 (189)
T ss_dssp TTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHH
Confidence 3468889999999999999999999999999999998887
No 176
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=67.44 E-value=1.7 Score=24.79 Aligned_cols=9 Identities=44% Similarity=0.959 Sum_probs=7.4
Q ss_pred HHhhHhhhc
Q 013724 26 RWMSQEVRE 34 (437)
Q Consensus 26 ~~~~~~~~~ 34 (437)
=|+|||.|-
T Consensus 8 ~wiAqELRR 16 (27)
T 3kj0_B 8 IWYAQELRR 16 (27)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 399999984
No 177
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=66.58 E-value=1.9 Score=24.54 Aligned_cols=8 Identities=50% Similarity=1.290 Sum_probs=6.9
Q ss_pred HhhHhhhc
Q 013724 27 WMSQEVRE 34 (437)
Q Consensus 27 ~~~~~~~~ 34 (437)
|+|||.|-
T Consensus 7 ~iAqELRR 14 (26)
T 2wh6_B 7 WIAQELRR 14 (26)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89999984
No 178
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=62.83 E-value=3 Score=28.36 Aligned_cols=16 Identities=44% Similarity=0.769 Sum_probs=13.2
Q ss_pred HHHHHHhhHhhhccCC
Q 013724 22 EEELRWMSQEVRESSP 37 (437)
Q Consensus 22 ~~~~~~~~~~~~~~~~ 37 (437)
-||.||+-.|||----
T Consensus 15 FEeIRwlIeE~Rh~Lk 30 (58)
T 1pd3_A 15 FEEIRWLIEEVRHRLK 30 (58)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4899999999997433
No 179
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=56.81 E-value=3.5 Score=22.50 Aligned_cols=8 Identities=38% Similarity=0.671 Sum_probs=6.3
Q ss_pred HHHHHHhh
Q 013724 22 EEELRWMS 29 (437)
Q Consensus 22 ~~~~~~~~ 29 (437)
-||||||-
T Consensus 14 meDLr~MT 21 (22)
T 3ro3_B 14 MEDLKLMT 21 (26)
T ss_pred HHHHHhhc
Confidence 48899984
No 180
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=20.67 E-value=40 Score=19.28 Aligned_cols=12 Identities=50% Similarity=0.606 Sum_probs=9.7
Q ss_pred HHHHHhhHhhhc
Q 013724 23 EELRWMSQEVRE 34 (437)
Q Consensus 23 ~~~~~~~~~~~~ 34 (437)
.|||-||.|.-+
T Consensus 13 ReLRRMSDEF~~ 24 (27)
T 2bzw_B 13 RELRRMSDEFEG 24 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhHHHHh
Confidence 589999999743
Done!