Query 013725
Match_columns 437
No_of_seqs 198 out of 794
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 15:56:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e20_C Eukaryotic peptide chai 100.0 1E-98 3E-103 769.3 22.8 425 8-437 14-441 (441)
2 1dt9_A ERF1, protein (eukaryot 100.0 9.4E-90 3.2E-94 707.9 31.3 435 1-437 1-436 (437)
3 3agk_A Peptide chain release f 100.0 3.2E-76 1.1E-80 596.2 32.5 363 6-419 7-371 (373)
4 3mca_B Protein DOM34, elongati 100.0 1.7E-61 5.7E-66 488.2 20.9 335 29-420 11-372 (390)
5 2vgn_A DOM34; translation term 100.0 1.6E-59 5.6E-64 473.8 25.7 332 30-419 14-377 (386)
6 3obw_A Protein pelota homolog; 100.0 1.4E-58 4.9E-63 462.0 17.4 319 30-419 29-364 (364)
7 3j15_A Protein pelota; ribosom 100.0 1.7E-59 5.8E-64 469.1 8.3 329 29-419 8-357 (357)
8 3oby_A Protein pelota homolog; 100.0 7.2E-58 2.5E-62 454.6 19.2 313 29-420 10-344 (352)
9 3agj_B Protein pelota homolog; 100.0 5.1E-58 1.7E-62 459.3 16.2 327 31-421 12-354 (358)
10 2qi2_A Pelota, cell division p 100.0 4E-56 1.4E-60 442.4 12.7 316 31-423 10-343 (347)
11 3ir9_A Peptide chain release f 100.0 6.5E-41 2.2E-45 299.0 18.0 162 257-419 2-165 (166)
12 1x52_A Pelota homolog, CGI-17; 99.9 4.6E-28 1.6E-32 205.6 8.1 108 274-419 11-118 (124)
13 3j21_Z 50S ribosomal protein L 94.2 0.42 1.4E-05 37.9 10.1 60 299-402 13-73 (99)
14 3on1_A BH2414 protein; structu 93.9 0.23 7.9E-06 39.5 8.1 75 296-414 13-87 (101)
15 3v7q_A Probable ribosomal prot 93.8 0.22 7.4E-06 39.8 7.8 75 296-414 14-88 (101)
16 2lbw_A H/ACA ribonucleoprotein 93.2 0.56 1.9E-05 38.6 9.5 62 298-402 17-78 (121)
17 3iz5_f 60S ribosomal protein L 93.0 0.76 2.6E-05 37.3 9.9 74 297-414 22-97 (112)
18 4a18_G RPL30; ribosome, eukary 92.6 0.38 1.3E-05 38.5 7.5 73 299-415 20-94 (104)
19 3v7e_A Ribosome-associated pro 92.5 0.25 8.4E-06 37.8 5.9 60 299-402 9-68 (82)
20 1xbi_A 50S ribosomal protein L 91.0 0.8 2.7E-05 37.6 7.9 84 289-416 18-102 (120)
21 3o85_A Ribosomal protein L7AE; 90.9 0.41 1.4E-05 39.6 6.0 62 298-402 28-89 (122)
22 1w41_A 50S ribosomal protein L 90.8 1 3.4E-05 35.7 8.1 76 299-418 14-91 (101)
23 2aif_A Ribosomal protein L7A; 90.6 1.2 4.2E-05 37.3 8.8 72 299-414 39-112 (135)
24 3cpq_A 50S ribosomal protein L 90.1 1 3.6E-05 36.3 7.7 76 299-418 19-96 (110)
25 2ale_A SNU13, NHP2/L7AE family 89.9 1.2 4E-05 37.4 8.0 61 299-402 30-90 (134)
26 2xzm_U Ribosomal protein L7AE 89.8 1.3 4.5E-05 36.7 8.2 71 288-402 12-82 (126)
27 3u5e_c L32, RP73, YL38, 60S ri 89.3 1.7 5.8E-05 34.7 8.3 62 297-402 18-80 (105)
28 2fc3_A 50S ribosomal protein L 88.3 1.1 3.8E-05 37.0 6.7 75 300-417 27-102 (124)
29 1vq8_F 50S ribosomal protein L 86.1 2.3 7.8E-05 34.8 7.4 61 299-402 27-87 (120)
30 3pwf_A Rubrerythrin; non heme 85.0 0.55 1.9E-05 41.2 3.2 60 289-366 103-162 (170)
31 1rlg_A 50S ribosomal protein L 84.7 2.5 8.6E-05 34.5 7.0 74 300-416 26-100 (119)
32 2jnb_A NHP2-like protein 1; sp 81.6 0.91 3.1E-05 38.6 3.1 30 299-328 48-77 (144)
33 3vi6_A 60S ribosomal protein L 80.2 6 0.0002 32.6 7.6 30 299-328 25-54 (125)
34 3u5c_M 40S ribosomal protein S 72.1 4.4 0.00015 34.3 4.7 60 300-402 39-100 (143)
35 1lko_A Rubrerythrin all-iron(I 69.7 3.2 0.00011 36.9 3.5 46 306-366 135-180 (191)
36 3jyw_G 60S ribosomal protein L 68.7 9.9 0.00034 30.7 5.9 63 297-402 21-83 (113)
37 1yuz_A Nigerythrin; rubrythrin 67.4 2.1 7.2E-05 38.4 1.8 25 333-366 171-195 (202)
38 1gz0_A Hypothetical tRNA/RRNA 66.4 11 0.00038 34.8 6.7 71 301-417 13-87 (253)
39 3a43_A HYPD, hydrogenase nicke 60.3 13 0.00043 31.2 5.3 19 320-342 61-79 (139)
40 2zkr_f 60S ribosomal protein L 60.2 11 0.00038 35.1 5.3 62 298-402 132-193 (266)
41 3nk6_A 23S rRNA methyltransfer 59.4 14 0.00047 34.8 5.9 69 301-417 35-106 (277)
42 2kdx_A HYPA, hydrogenase/ureas 52.4 6.7 0.00023 31.8 2.2 26 333-366 73-99 (119)
43 1ipa_A RRMH, RNA 2'-O-ribose m 50.5 16 0.00053 34.3 4.7 27 301-327 29-56 (274)
44 3izc_H 60S ribosomal protein R 50.1 29 0.001 32.0 6.3 59 301-402 131-189 (256)
45 2lcq_A Putative toxin VAPC6; P 45.2 9.2 0.00032 32.8 2.0 59 301-367 99-158 (165)
46 3irb_A Uncharacterized protein 44.2 14 0.00046 31.2 2.9 37 307-366 34-70 (145)
47 6rxn_A Rubredoxin; electron tr 44.0 15 0.00053 24.5 2.5 29 334-366 5-39 (46)
48 2kg4_A Growth arrest and DNA-d 39.2 63 0.0021 27.8 6.3 66 300-402 34-101 (165)
49 2kn9_A Rubredoxin; metalloprot 38.3 17 0.00057 27.5 2.2 30 333-366 27-69 (81)
50 2gnr_A Conserved hypothetical 36.9 18 0.00062 30.4 2.5 37 307-366 34-70 (145)
51 2gmg_A Hypothetical protein PF 36.8 39 0.0013 26.8 4.2 34 319-367 61-94 (105)
52 4a17_F RPL7A, 60S ribosomal pr 35.4 82 0.0028 29.0 6.8 59 301-402 124-182 (255)
53 3sr0_A Adenylate kinase; phosp 35.2 9.1 0.00031 34.1 0.4 124 224-367 3-147 (206)
54 3iz5_H 60S ribosomal protein L 35.2 63 0.0022 29.7 6.0 74 301-417 127-200 (258)
55 1twf_L ABC10-alpha, DNA-direct 34.5 20 0.00067 26.3 2.0 28 332-366 27-54 (70)
56 1dx8_A Rubredoxin; electron tr 33.5 23 0.0008 25.9 2.3 30 333-366 7-49 (70)
57 4ayb_P DNA-directed RNA polyme 31.0 23 0.00079 23.7 1.7 29 334-366 4-32 (48)
58 1gh9_A 8.3 kDa protein (gene M 29.8 18 0.0006 26.7 1.1 28 334-369 5-32 (71)
59 1s24_A Rubredoxin 2; electron 29.1 31 0.001 26.4 2.4 12 355-366 66-77 (87)
60 2apo_B Ribosome biogenesis pro 28.8 25 0.00084 25.0 1.7 21 335-367 8-28 (60)
61 1e8j_A Rubredoxin; iron-sulfur 26.0 39 0.0013 23.1 2.2 12 355-366 34-45 (52)
62 2aus_D NOP10, ribosome biogene 25.9 30 0.001 24.6 1.6 21 335-367 7-27 (60)
63 2v3b_B Rubredoxin 2, rubredoxi 25.9 41 0.0014 23.3 2.4 12 355-366 34-45 (55)
64 3h0g_L DNA-directed RNA polyme 24.6 36 0.0012 24.4 1.9 28 332-366 20-47 (63)
65 3nkl_A UDP-D-quinovosamine 4-d 24.5 1.4E+02 0.0047 23.8 6.0 55 300-397 48-102 (141)
66 3v2d_5 50S ribosomal protein L 22.9 45 0.0015 23.6 2.1 19 335-364 32-50 (60)
67 4rxn_A Rubredoxin; electron tr 22.6 49 0.0017 22.9 2.2 12 355-366 34-45 (54)
68 1yk4_A Rubredoxin, RD; electro 22.1 53 0.0018 22.4 2.3 12 355-366 33-44 (52)
69 1zma_A Bacterocin transport ac 21.2 1.6E+02 0.0055 22.3 5.6 30 286-318 2-31 (118)
No 1
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-98 Score=769.29 Aligned_cols=425 Identities=63% Similarity=1.029 Sum_probs=242.0
Q ss_pred hhhHHHHHHHHHHHHHHccCCCCcceEEEEeCCCCChHHHHhhhhhhhhhhhhhhhhhhhhhhhHhHHHHHHHhhccccc
Q 013725 8 DKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKV 87 (437)
Q Consensus 8 ~~~~~~~~~~~~l~~L~~~~g~~t~lvSlyip~~~~~~~v~~~l~~e~~~a~nik~~~~r~~v~~al~~~~~rl~~~~~~ 87 (437)
++++++|+||++|++|++++|+||+||||||||+++|++|.++|++||++|+|||||++|++|++|++++++||+++.++
T Consensus 14 ~~~~~~~~~k~~i~~l~~~~g~gt~lisl~ipp~~~i~~v~~~l~~e~~~asnIksk~~r~~v~~ai~s~~~rlkl~~~v 93 (441)
T 3e20_C 14 EKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKV 93 (441)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSSCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred hhHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCcHHHHHHHHHHHHhhhhhhhhhhhccchhhHHHHHHHHHhhhccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeccccCCCCCeeEEEEeecCCCcceeeeeeccCccchHHHHHhhccCCcEEEEEEECCceEEEEEeCCeEEE
Q 013725 88 PPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREV 167 (437)
Q Consensus 88 ~~~Gl~~fa~~~~~~~G~~~~~tl~i~p~~~v~~~~~~~~~~~~l~~L~~~~~~~~~~~vvvvd~~~A~i~~~~g~~~~~ 167 (437)
|++|+++|||.+....|.+.+||++++||+||++++|+||+.||++||.++++++.++++|+||+++|.|+++.|+++++
T Consensus 94 p~~g~v~~~G~~~~e~~~~~~~T~~iep~~pi~i~k~~~w~~~~le~L~eal~~~~~~gvVvvD~~ga~i~~l~g~~~ev 173 (441)
T 3e20_C 94 PDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSAREV 173 (441)
T ss_dssp TTSCCEEEEEEECCGGGCCEEEEEEECCSCCTTCCEEEEESSCCCTTGGGGC----------------------------
T ss_pred CCCCEEEEeceeeccCCceeEEEEEecCCCceEEEEEccCCHHHHHHHHHHhCccCcEEEEEEecCCeEEEEEecCeEEE
Confidence 99999999998765445666799999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEEeecCCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEecChhcHHHhhhccCCChhh
Q 013725 168 LHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRL 247 (437)
Q Consensus 168 ~~~~~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~f~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~l 247 (437)
+.+++.++|+||++||||+.||+|++++++++||++|++.+.++|.. .++.++++||||||+++|+.|.++++|+++|
T Consensus 174 l~~i~~~vPkK~~~GG~S~~RF~R~ree~~~~f~~~Vae~l~~~~~~--~~~~~v~~lVlaGPg~~k~~f~~~~~l~~~L 251 (441)
T 3e20_C 174 LQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFIT--DDKPNVAGIVLAGSADFKTELGQSDLFDQRL 251 (441)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEecCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hcccCcCEEEEECCHHHHHHHHHhcccCHHH
Confidence 99999999999999999999999999999999999999999999863 3356899999999999999999878999999
Q ss_pred hcceeEEEeCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEcHHHHHHHHHhCCccEEEeccCc
Q 013725 248 QAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENL 327 (437)
Q Consensus 248 ~~~vi~~v~~s~~~~~gl~E~l~~~~~~l~~~~~~~e~~ll~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l 327 (437)
++++++++++|||+++|++|++++++++|+++++++|+++|++|++++++++|+||||+++|.+|+++|||+||||+|++
T Consensus 252 ~~kvv~~vdvs~gg~~Gl~EvL~~~~~~L~d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l 331 (441)
T 3e20_C 252 QSRIIKTVDVSYGGDAGFNQAIELAADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADL 331 (441)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETTC
T ss_pred HhheEEEEECCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEeccc
Confidence 99987889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeecCCCCceEEEecccccccc---cCCccCccccchhhhhhhccHHHHHHHHHHhcCCeEEEeCCCCchhhhhh
Q 013725 328 DINRYVLKNSATGEIVIKHLNRDQEAD---QSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCTLEFVTNKSQEGSQFC 404 (437)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~cp~~~~~~~~~~~~~~v~~l~~~a~~~ga~V~vvs~~~e~G~q~l 404 (437)
...|++++|++|++ .+.++.|.+..+ .+.+.||.||.+++++++.++++||++.|+++||+|+|||+.|++|.||+
T Consensus 332 ~~~r~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~l~e~a~~~G~~v~~vs~~~~eG~ql~ 410 (441)
T 3e20_C 332 DMIRYEFKNSEGNP-VITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFV 410 (441)
T ss_dssp CCEEC-----------CCEECSCTTTCCC-----------------CCEEHHHHHHHHGGGGSCCEEEECTTSHHHHHHH
T ss_pred ccceeEEECCCCce-EEEecCccccccccccccccCcccCccceecchhhHHHHHHHHHHHcCCEEEEECCCCHHHHHHH
Confidence 99999999999963 445666665322 34568999999999999999999999999999999999999999999988
Q ss_pred cccccEEEEeecccCcccccccCCCCCCCCCCC
Q 013725 405 RGFGGIGGILRYQLDIRSYDELSDDGGVYEDSD 437 (437)
Q Consensus 405 ~~~GGIaAiLRy~~~~~~~~~~~~~~~~~~~~~ 437 (437)
++|||||||||||++++++.++ +|++|+++|
T Consensus 411 ~~fgGIaaiLRy~~~~~~~~~~--~~~~~~~~~ 441 (441)
T 3e20_C 411 KGFGGIGAVMRYQLDLSMLDPE--SDEFYSDSD 441 (441)
T ss_dssp HTSTTEEEECSSCCCCCSSCSS--CCC------
T ss_pred HcCCcEEEEEeccCChHHhccc--cccccccCC
Confidence 9999999999999999887754 355687765
No 2
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=100.00 E-value=9.4e-90 Score=707.87 Aligned_cols=435 Identities=75% Similarity=1.145 Sum_probs=372.8
Q ss_pred CCC-ccchhhhHHHHHHHHHHHHHHccCCCCcceEEEEeCCCCChHHHHhhhhhhhhhhhhhhhhhhhhhhhHhHHHHHH
Q 013725 1 MSD-GQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQ 79 (437)
Q Consensus 1 ~~~-~~~~~~~~~~~~~~~~l~~L~~~~g~~t~lvSlyip~~~~~~~v~~~l~~e~~~a~nik~~~~r~~v~~al~~~~~ 79 (437)
|.+ .+++++++++|+||++|+.|++++|+||++||+||||+++++++.+++.++|++++|||+|.+|++++.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~k~~l~~L~~~~g~gt~~isl~I~pgd~v~~~t~rl~~e~~~~~~iks~~~r~~v~~ai~~~~~ 80 (437)
T 1dt9_A 1 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQ 80 (437)
T ss_dssp ----CCTTTHHHHHHHHHHHHHHHHTCCCSSSCEEEEEECSSSCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHH
T ss_pred CCcccchhhHHHHHHHHHHHHHHHhhccCCCCeEEEEEECCCCchhHHHHHHHHHhccccccccchHHHhHHHHHHHHHH
Confidence 555 3444789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCCCeEEEEeccccCCCCCeeEEEEeecCCCcceeeeeeccCccchHHHHHhhccCCcEEEEEEECCceEEEE
Q 013725 80 RLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGT 159 (437)
Q Consensus 80 rl~~~~~~~~~Gl~~fa~~~~~~~G~~~~~tl~i~p~~~v~~~~~~~~~~~~l~~L~~~~~~~~~~~vvvvd~~~A~i~~ 159 (437)
+++++.++|++|+++|||.+....|..++||++++||.|++..+|.||++||++||.++++...+|++|+||+++|.||+
T Consensus 81 ~l~~~~~~~~~Glvvf~g~~~~~~g~~~~~tl~~e~~~pi~~~~~~~~~~f~l~~L~~~~~~~~~~~vvvvd~~~A~i~~ 160 (437)
T 1dt9_A 81 RLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGT 160 (437)
T ss_dssp HHTTCSSCCTTCEEEEEEEEECGGGCEEEEEEEECCSCCTTCCEEEEESSCCCHHHHHHCCCCCEEEEEECCSSCCCEEE
T ss_pred HhccCCCCCCCeEEEEeCccccCCCceEEEEEEecCCCCCceeEEEecChhhHHHHHHHhcCCCCEEEEEEeCCceEEEE
Confidence 99999999999999999986544566566999999999998777779999999999999999999999999999999999
Q ss_pred EeCCeEEEEeEEeecCCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEecChhcHHHhhh
Q 013725 160 LSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQ 239 (437)
Q Consensus 160 ~~g~~~~~~~~~~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~f~~~~~~~~~~~~lilaGp~~~k~~f~~ 239 (437)
+++++++++.+++..+|+||++||||+.||+|++++++++||++|++++.++|.. .++.++++||||||+++|+.|.+
T Consensus 161 ~~~~~~~~~~~i~~~~P~K~~~Gg~s~~Rf~R~ree~~~~f~~~Vae~l~~~~~~--~~~~~~~~lIlaGpg~~k~~f~~ 238 (437)
T 1dt9_A 161 LQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFIS--GDKVNVAGLVLAGSADFKTELSQ 238 (437)
T ss_dssp EETTEEEEEECCCCCCSCCCCSSCSCSHHHHHHHHHHTTTTTTHHHHHTTTTTSC--SSSCSSSCCEEEESTTTTHHHHS
T ss_pred EcCcEEEEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cccCCccEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999763 23458999999999999999998
Q ss_pred ccCCChhhhcceeEEEeCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEcHHHHHHHHHhCCcc
Q 013725 240 SDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVE 319 (437)
Q Consensus 240 ~~~l~~~l~~~vi~~v~~s~~~~~gl~E~l~~~~~~l~~~~~~~e~~ll~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~ 319 (437)
+++++++|+++++.++++||++++|++|++++++++|+++++++|+++|++|++++++++|++|||+++|++|+++|||+
T Consensus 239 ~~~l~~~L~~~vv~~v~~s~g~~~gl~E~l~~~~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GaVe 318 (437)
T 1dt9_A 239 SDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVE 318 (437)
T ss_dssp CSSSCTTTTTTCCCEEECSSCTTHHHHHHHHHHSSTTTSHHHHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCS
T ss_pred hhccChhhHhcEEEEEecCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEecHHHHHHHHHhCCcc
Confidence 88999999999888999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred EEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHHHHHHHhcCCeEEEeCCCCch
Q 013725 320 ILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCTLEFVTNKSQE 399 (437)
Q Consensus 320 tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l~~~a~~~ga~V~vvs~~~e~ 399 (437)
||||+|++..+|++++|++||.....++.+.+...+....||.||.+++.++..++++||++.|+++||+|+|||++|++
T Consensus 319 tLLv~d~l~~~r~~~r~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~ve~L~e~~~~~G~~V~ivs~~~e~ 398 (437)
T 1dt9_A 319 ILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQE 398 (437)
T ss_dssp EEEEESCCCCBCCCC---------CCCBCTTCSSCCCCCC-----------CCCBHHHHHHHTCTTTTSCEEEECSSSHH
T ss_pred EEEEecCcccceEEEEcCCCCceeeeeeccccccccccccCcccCccccccccccHHHHHHHHHHHcCCEEEEECCCChh
Confidence 99999999999999999999987777777765334556789999999888899999999999999999999999999999
Q ss_pred hhhhhcccccEEEEeecccCcccccccCCCCCCCCCCC
Q 013725 400 GSQFCRGFGGIGGILRYQLDIRSYDELSDDGGVYEDSD 437 (437)
Q Consensus 400 G~q~l~~~GGIaAiLRy~~~~~~~~~~~~~~~~~~~~~ 437 (437)
|+|||++|||||||||||++++++.+++++|+||+++|
T Consensus 399 G~q~l~~~gGIaAiLRy~i~~~~~~~~~~~~~~~~~~~ 436 (437)
T 1dt9_A 399 GSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDD 436 (437)
T ss_dssp HHHHHHTTTTEEEECSSCCCCCCC--------------
T ss_pred HHHHHHhCCCEEEEEecccchhhhccccccccccCcCC
Confidence 99999999999999999999888877555666777654
No 3
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=100.00 E-value=3.2e-76 Score=596.18 Aligned_cols=363 Identities=29% Similarity=0.518 Sum_probs=323.3
Q ss_pred chhhhHHHHHHHHHHHHHHccCCCCcceEEEEeCCCCChHHHHhhhhhhhhhhhhhhhhhhhhhhhHhHHHHHHHhhccc
Q 013725 6 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYN 85 (437)
Q Consensus 6 ~~~~~~~~~~~~~~l~~L~~~~g~~t~lvSlyip~~~~~~~v~~~l~~e~~~a~nik~~~~r~~v~~al~~~~~rl~~~~ 85 (437)
+.+.++++|+||++|++|.+++|+||++|||||||+++++++.++|+++|++++|||+|.+|++|.++|++++++|+.+.
T Consensus 7 ~~~~~~~~~~~k~~l~~L~~~~~~~t~~vSlyip~~~~~~~~~~~l~~e~~~a~nik~~~~r~~v~~al~~~~~~l~~~~ 86 (373)
T 3agk_A 7 EERLTISKRELARLLKELKKWSAPATVLLSLYIPPGRPLSDVMTLLRQEYSITDNIKLKRTRQAVKRALSAAMDRLQMLT 86 (373)
T ss_dssp CGGGBCCHHHHHHHHHHHTTCCCSSSCEEEEEECTTSCHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hhhhhhHHHHHHHHHHHHhhCcCCCCeEEEEEECCCCchHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcC
Confidence 33578999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCeEEEEeccccCCCCCeeEEEEeecCCCcceeeeeeccCccchHHHHHhhccCCcEEEEEEECCceEEEEEeCCeE
Q 013725 86 KVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTR 165 (437)
Q Consensus 86 ~~~~~Gl~~fa~~~~~~~G~~~~~tl~i~p~~~v~~~~~~~~~~~~l~~L~~~~~~~~~~~vvvvd~~~A~i~~~~g~~~ 165 (437)
+.|++|+|+||+... +.|.+ ||++++||.|+++++|.||+.||++||.++++.+.+|++|+||+++|.||+++++++
T Consensus 87 ~~~~~Gl~vf~~~~~-~~~~~--~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~~~~~~vvvvd~~~A~i~~~~~~~~ 163 (373)
T 3agk_A 87 STPPNGLVLFCGEDM-STGKF--ECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNNAIGIIIVERDQATIGLLKGARL 163 (373)
T ss_dssp SCCTTCEEEEEEC------CC--EEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSCSCEEEEEEEETTEEEEEEEETTEE
T ss_pred CCCCCEEEEEEecCC-CCccE--EEEEecCCCCceEEEEecCChhHHHHHHHHhcCCCCEEEEEEeCCcEEEEEEeCcEE
Confidence 899999999999753 23445 999999999999999989999999999999999999999999999999999999999
Q ss_pred EEEeEEeecCCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCccEEEEecChhcHHHhhhccCCC
Q 013725 166 EVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATS-QPNVSGLILAGSADFKTELSQSDMFD 244 (437)
Q Consensus 166 ~~~~~~~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~f~~~~~~-~~~~~~lilaGp~~~k~~f~~~~~l~ 244 (437)
+++.+++.++|+||++||||+.||+|++++.+++||++|++.+.++|.+ .+ +.++++||||||+++++.|.+.++|+
T Consensus 164 ~~~~~i~~~vp~K~~~gG~s~~rf~r~~e~~~~~f~~~V~~~l~~~~~~--~~~~~~~~~lilaGp~~~k~~f~~~~~l~ 241 (373)
T 3agk_A 164 EVLKELEGFVPGKHKMGGQSQRRYERIIEQMVDEFFKKVGEEASNLLVP--LAEKGVLKGVIVAGPGLAKQEFVEGNYLD 241 (373)
T ss_dssp EEEEEEECCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTCEEEEEEEESTTHHHHHHHSSCSC
T ss_pred EEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccccCcceEEEECChHHHHHhhhhhhcC
Confidence 9999999999999999999999999999999999999999999999731 11 25799999999999999999777899
Q ss_pred hhhhccee-EEEeCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEcHHHHHHHHHhCCccEEEe
Q 013725 245 PRLQAKIL-NVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIV 323 (437)
Q Consensus 245 ~~l~~~vi-~~v~~s~~~~~gl~E~l~~~~~~l~~~~~~~e~~ll~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~tLlV 323 (437)
++++++++ +++++++++++|++|+++++.++|+++++++|+++|++|++++++++|+++||+++|++|+++|||+||||
T Consensus 242 ~~l~~~vi~~~v~~s~~~~~g~~E~l~~~~~~l~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~eV~~Al~~GaVetLlv 321 (373)
T 3agk_A 242 YRLKKILAPELVDVAYQGLQGLKEAVMKAEKVVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKDVEAALEMGAVKTLLI 321 (373)
T ss_dssp HHHHTTBCSSCEECCCCHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHTTCCCEEESHHHHHHHHHTTCEEEEEE
T ss_pred hHhhhCceeEEEccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHHHHHHHHhCCccEEEE
Confidence 99999986 68999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred ccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHHHHHHHhcCCeEEEeCCCCchhhhh
Q 013725 324 WENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCTLEFVTNKSQEGSQF 403 (437)
Q Consensus 324 ~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l~~~a~~~ga~V~vvs~~~e~G~q~ 403 (437)
+|+ . + ++++|++.|.++||+|+|||++|++|+||
T Consensus 322 ~d~-r--------d-------------------------------------~~~~L~e~a~~~G~~V~ivs~~~~~g~ql 355 (373)
T 3agk_A 322 HES-R--------E-------------------------------------DLEEWVEKAKSSGAQVIVVPESLAEAEWF 355 (373)
T ss_dssp ETT-C--------T-------------------------------------THHHHHHHHTTTTCEEEEECTTSTTHHHH
T ss_pred eCC-h--------h-------------------------------------HHHHHHHHHHHcCCEEEEECCCCccHHHH
Confidence 986 1 1 15899999999999999999999999996
Q ss_pred hcccccEEEEeecccC
Q 013725 404 CRGFGGIGGILRYQLD 419 (437)
Q Consensus 404 l~~~GGIaAiLRy~~~ 419 (437)
+++|||||||||||++
T Consensus 356 ~~~~gGIaAiLRy~~~ 371 (373)
T 3agk_A 356 LKTFGGLAGILRFRIS 371 (373)
T ss_dssp HHHHTTEEEEECC---
T ss_pred HHhCCcEEEEEeccCC
Confidence 6999999999999986
No 4
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-61 Score=488.17 Aligned_cols=335 Identities=18% Similarity=0.262 Sum_probs=272.7
Q ss_pred CCcceEEEEeCCCCChHHHHhhhh-hhhhhhhhhhhhhhhhhhhHhHHHHHHHhhccc------ccCCCeEEEEeccccC
Q 013725 29 NGTSMISLIMPPRDQISRVTKMLG-DEFGTASNIKSRVNRQSVLAAITSAQQRLKLYN------KVPPNGLVLYTGTVVT 101 (437)
Q Consensus 29 ~~t~lvSlyip~~~~~~~v~~~l~-~e~~~a~nik~~~~r~~v~~al~~~~~rl~~~~------~~~~~Gl~~fa~~~~~ 101 (437)
++.+.|+|++...+|+|+++|++. .+...|..+| |+++.+..++-.+.+.++.+.- --|.+|++.++|.+..
T Consensus 11 ~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~R-kv~~~~~~~~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~ 89 (390)
T 3mca_B 11 NGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVR-RVVKVGATGSTSGSRVVMKLRILVENMDFDTKAAQLHIKGRTTE 89 (390)
T ss_dssp C-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCC-C--------------------EECCCEEECTTSSCEEEC-CBCS
T ss_pred CCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEE-EEEccCCCCCCceEEEEEEEEEEEEEEEecCCCCEEEEEEEEec
Confidence 455699999999999999999999 6666676666 3444433333333333333221 1366888888887754
Q ss_pred C-----CCCeeEEEEeecCCCcceeeeeeccCccchHHHHHhhccC--CcEEEEEEECCceEEEEEeCCeEEEEeEEeec
Q 013725 102 D-----DGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESD--DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVD 174 (437)
Q Consensus 102 ~-----~G~~~~~tl~i~p~~~v~~~~~~~~~~~~l~~L~~~~~~~--~~~~vvvvd~~~A~i~~~~g~~~~~~~~~~~~ 174 (437)
. .|+| ||++++||+||+++|+ ||+.|+++||.+|+++. ..+++|+||++.|.||++++++++++++++..
T Consensus 90 ~~~~vk~G~~--HTl~ie~~~~i~i~K~-~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~ 166 (390)
T 3mca_B 90 YHPEVKMGSY--HTLDLELHRNFTLYKN-EWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILRQRIDQV 166 (390)
T ss_dssp CCC---CCSC--CCCCCCSSSCCBCC-C-CCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCEEEEEEEECC
T ss_pred CCccccccce--EEEEEecCCcEEEEEc-CCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEEEEEEEEEEe
Confidence 3 4777 9999999999999997 99999999999999986 45999999999999999999999999999999
Q ss_pred CCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEecChhcHHHhhhccCCChh--------
Q 013725 175 LPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPR-------- 246 (437)
Q Consensus 175 vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~f~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~-------- 246 (437)
+|+||+.||+ + +++++++||++|++.+.++| ++.++++|||||||++|+.|.++ |+++
T Consensus 167 iPkK~~~gg~-~------~~~~~~~F~~~V~e~l~~~~-----d~~~v~~iIlaGPgf~K~~f~~~--L~~~~~~~~~k~ 232 (390)
T 3mca_B 167 IPRKRRGDSS-A------YQKGLDKFYDSVFQSINSEF-----DFDKLKVVILASPGFVARGLYDY--IFSMAVKLDLKQ 232 (390)
T ss_dssp CCCCBTTBCH-H------HHHHHHHHHHHHHHHHHHHC-----CTTTCSEEEEEESSSHHHHHHHH--HHHHHHHTTCHH
T ss_pred CCCcCCCCch-h------HHHHHHHHHHHHHHHHHHHh-----cccCCcEEEEECChHHHHHHHHH--HHHHHhhccchh
Confidence 9999987775 3 68999999999999999995 46789999999999999999974 6543
Q ss_pred ---hhcceeEEEeCCCCCcccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEcHHHHHHHHHhCCccEE
Q 013725 247 ---LQAKILNVVDVSYGGENGFNQAIEL--SAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEIL 321 (437)
Q Consensus 247 ---l~~~vi~~v~~s~~~~~gl~E~l~~--~~~~l~~~~~~~e~~ll~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~tL 321 (437)
++.++ .++++|+|+++|++|++++ ++++|+++++++|+++|++|++++++++|+||||+++|.+|+++|||+||
T Consensus 233 l~~~~~k~-~vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetL 311 (390)
T 3mca_B 233 IVKSKNKF-VILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGEL 311 (390)
T ss_dssp HHHHGGGE-EEEECSCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSC
T ss_pred hhhhcCeE-EEEEcCCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEE
Confidence 35777 6899999999999999999 56999999999999999999999999999999999999999999999999
Q ss_pred EeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHHHHHHHhcCCeEEEeCCCCchhh
Q 013725 322 IVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCTLEFVTNKSQEGS 401 (437)
Q Consensus 322 lV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l~~~a~~~ga~V~vvs~~~e~G~ 401 (437)
||+|++. +|++|+ .+.+++ +|++.|+++||+|+|||++|++|+
T Consensus 312 LI~d~l~------r~~d~~------------------------------~r~~~~-~L~e~~~~~Gg~V~ivs~~~~~G~ 354 (390)
T 3mca_B 312 LISDSLF------RSSDIA------------------------------TRKKWV-SLVEGVKEINCPVYIFSSLHESGK 354 (390)
T ss_dssp EEEETTC------CCSCHH------------------------------HHHHHH-HHHHHHHHTTCCEEEECTTSHHHH
T ss_pred EEecccc------cCCChh------------------------------HHHHHH-HHHHHHHhcCCEEEEECCCCCchh
Confidence 9999997 776432 123334 899999999999999999999999
Q ss_pred hhhcccccEEEEeecccCc
Q 013725 402 QFCRGFGGIGGILRYQLDI 420 (437)
Q Consensus 402 q~l~~~GGIaAiLRy~~~~ 420 (437)
| |++|||||||||||++.
T Consensus 355 q-L~~lgGiaAiLRy~i~~ 372 (390)
T 3mca_B 355 Q-LDLLSGIAAILTYPVDE 372 (390)
T ss_dssp H-HHHTTSEEEEBSSCCCC
T ss_pred h-hhcCCcEEEEEeccCCc
Confidence 9 79999999999999983
No 5
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=100.00 E-value=1.6e-59 Score=473.81 Aligned_cols=332 Identities=17% Similarity=0.219 Sum_probs=270.5
Q ss_pred CcceEEEEeCCCCChHHHHhhhh-hhhhhhhhhhhhhhhhhhhHhHHHHHHHhhc------ccccCCCeEEEEeccccCC
Q 013725 30 GTSMISLIMPPRDQISRVTKMLG-DEFGTASNIKSRVNRQSVLAAITSAQQRLKL------YNKVPPNGLVLYTGTVVTD 102 (437)
Q Consensus 30 ~t~lvSlyip~~~~~~~v~~~l~-~e~~~a~nik~~~~r~~v~~al~~~~~rl~~------~~~~~~~Gl~~fa~~~~~~ 102 (437)
+.+.|+|.+...+|+|+++|.+. .+...+...| |+.+ ...++ .+.+.++++ +.-.|.+|++.++|.+...
T Consensus 14 ~~g~v~l~pE~~dDlw~lynli~~gD~v~~~T~R-kv~~-~~~g~-~~~r~~~~L~i~Ve~~~f~~~~~~lri~G~i~~~ 90 (386)
T 2vgn_A 14 GGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKF-TSKL-DEAGK-KKSTDLVKLKIKVISEDFDMKDEYLKYKGVTVTD 90 (386)
T ss_dssp TCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC----------------CCEEEEEEEEEEEEETTTTEEEEEEEECCC
T ss_pred CCceEEEEECCHHHHHHHHHhcCCCCEEEEEEEE-EEec-cCCCC-ceEEEEEEEEEEEEEEEecCCCCEEEEEEEEEcc
Confidence 45689999999999999999998 4444444333 1222 33356 667777776 4445778888888877532
Q ss_pred ----------CCCeeEEEEeecCCCcceeeeeeccCccchHHHHHhhcc--CCcEEEEEEECCceEEEEEeCCeEEEEeE
Q 013725 103 ----------DGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLES--DDKFGFIVMDGNGTLFGTLSGNTREVLHK 170 (437)
Q Consensus 103 ----------~G~~~~~tl~i~p~~~v~~~~~~~~~~~~l~~L~~~~~~--~~~~~vvvvd~~~A~i~~~~g~~~~~~~~ 170 (437)
.|+| ||++++||+||+++||. |+.||++||.+|++. ...|++|+||+++|.||++++++++++.+
T Consensus 91 ~~~~~~~~vk~g~~--hT~~iep~~~i~i~k~~-w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~~~~ 167 (386)
T 2vgn_A 91 ESGASNVDIPVGKY--LSFTLDYVYPFTIIKQN-FNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHVCLVTSSSTILKQK 167 (386)
T ss_dssp TTSSSSTTCCTTCE--EEEECCSSSCEEEEESC-CCHHHHHHHHHTTCTTTTTCEEEEEEETTEEEEEEECSSCEEEEEE
T ss_pred CCccccccccCccE--EEEEEeCCCeEEEEEcc-CChhhHHHHHHHhccccCCCEEEEEEECCcEEEEEEECCEEEEEEE
Confidence 2666 99999999999999995 999999999999985 58899999999999999999999999999
Q ss_pred EeecCCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEecChhcHHHhhhccCCChhh---
Q 013725 171 FTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRL--- 247 (437)
Q Consensus 171 ~~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~f~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~l--- 247 (437)
++.++|+||+.|++|+ +++++++||++|++++.++|. +.++++|||||||++|+.|.+ ++++++
T Consensus 168 i~~~iP~K~~~g~~s~------~~~~~~~F~~~V~~~l~~~~~-----~~~v~~lIlaGPg~~k~~f~~--~l~~~~~~~ 234 (386)
T 2vgn_A 168 IEYSMPKKKRTTDVLK------FDEKTEKFYKAIYSAMKKDLN-----FDKLKTIILCSPGFYAKILMD--KIFQYAEEE 234 (386)
T ss_dssp EEC---------CCSS------CCHHHHHHHHHHHHHHHHHCC-----TTTCSEEEEEESTTHHHHHHH--HHHHHHHHT
T ss_pred EEecCCCCccCCCcch------HHHHHHHHHHHHHHHHHHHhc-----ccCCcEEEEECCHHHHHHHHH--HHHHHhhhh
Confidence 9999999997643444 467899999999999999963 578999999999999999994 577665
Q ss_pred --------hcceeEEEeCCCCCcccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEcHHHHHHHHHhCC
Q 013725 248 --------QAKILNVVDVSYGGENGFNQAIEL--SAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGA 317 (437)
Q Consensus 248 --------~~~vi~~v~~s~~~~~gl~E~l~~--~~~~l~~~~~~~e~~ll~~f~~~~~~~~g~a~yG~~eV~~Al~~Ga 317 (437)
++++ .++++|+++++|++|++++ ++++|+++++++|+++|++|+++++++++++|||+++|++|+++||
T Consensus 235 ~~~~~~~~~~ki-~vv~~s~~~~~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~eV~~Ale~GA 313 (386)
T 2vgn_A 235 HNKKILDNKGMF-FIAHCSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGA 313 (386)
T ss_dssp TCHHHHTTGGGE-EEEECSCSSTHHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHHHHHHHHTTC
T ss_pred ccchhhhccCcE-EEEECCCCccccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHcCC
Confidence 3666 6899999999999999999 7899999999999999999999999999999999999999999999
Q ss_pred ccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHHHHHHHhcCCeEEEeCCCC
Q 013725 318 VEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCTLEFVTNKS 397 (437)
Q Consensus 318 V~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l~~~a~~~ga~V~vvs~~~ 397 (437)
|+||||+|++. +|+ | |. ++.+ +++|++.|+++||+|+|||++|
T Consensus 314 VetLLV~d~l~------r~~-d---------------------~~--------~r~~-v~~L~e~v~~~Gg~V~ivs~~~ 356 (386)
T 2vgn_A 314 ISYLLLTDKVL------HSD-N---------------------IA--------QREE-YLKLMDSVESNGGKALVLSTLH 356 (386)
T ss_dssp EEEEEEETTGG------GSS-C---------------------HH--------HHHH-HHHHHHHHHHTTCEEEEECTTS
T ss_pred cEEEEEechhh------cCC-C---------------------ch--------hhhH-HHHHHHHHHHcCCEEEEECCCC
Confidence 99999999996 665 1 11 1233 7999999999999999999999
Q ss_pred chhhhhhcccccEEEEeecccC
Q 013725 398 QEGSQFCRGFGGIGGILRYQLD 419 (437)
Q Consensus 398 e~G~q~l~~~GGIaAiLRy~~~ 419 (437)
++|+| |++|||||||||||++
T Consensus 357 e~G~q-L~~lgGIAAiLRy~i~ 377 (386)
T 2vgn_A 357 SLGEE-LDQLTGIACILKYPLP 377 (386)
T ss_dssp HHHHH-HHHTTTEEEEESSCCC
T ss_pred cchhh-HhccCcEEEEEecCCC
Confidence 99999 6999999999999998
No 6
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-58 Score=462.00 Aligned_cols=319 Identities=18% Similarity=0.237 Sum_probs=259.7
Q ss_pred CcceEEEEeCCCCChHHHHhhhh-hhhhhhhhhhhhhhhhhhhHhHHHHHHHhhc--------------ccccCCCeEEE
Q 013725 30 GTSMISLIMPPRDQISRVTKMLG-DEFGTASNIKSRVNRQSVLAAITSAQQRLKL--------------YNKVPPNGLVL 94 (437)
Q Consensus 30 ~t~lvSlyip~~~~~~~v~~~l~-~e~~~a~nik~~~~r~~v~~al~~~~~rl~~--------------~~~~~~~Gl~~ 94 (437)
+.+.|+|.+...+|+|+++|++. .+...|...|. +.+ +. ..+|... .+.++.+|.++
T Consensus 29 ~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rk-v~~----~~---~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~iv 100 (364)
T 3obw_A 29 KRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRD-VGL----GK---ESRRIPMTIILKVDYTEFQEFTNRLRIHGIIE 100 (364)
T ss_dssp CCCCEEEECCSHHHHHHHHHHCCTTCEEEEEEEEE-CC----------CCCEEEEEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCceEEEEeCCHHHHHHHHHhccCCCEEEEEEEEE-EEc----CC---ceEEEEEEEEEEEEEEEecCCCCEEEEEEEEE
Confidence 45589999999999999999998 65555554442 221 11 1123221 13455677777
Q ss_pred EeccccCCCCCeeEEEEeecCCCcceeeeeeccCccchHHHHHhhccCCcEEEEEEECCceEEEEEeCCeEEEEeEEeec
Q 013725 95 YTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVD 174 (437)
Q Consensus 95 fa~~~~~~~G~~~~~tl~i~p~~~v~~~~~~~~~~~~l~~L~~~~~~~~~~~vvvvd~~~A~i~~~~g~~~~~~~~~~~~ 174 (437)
.+++.....|+| ||++++|++||+++||. |+.|+++||.++++....+++|+||+++|.||++++++++++.+++.+
T Consensus 101 ~~~~~~v~~G~~--HT~~ie~~~~i~i~K~~-w~~~~le~L~e~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~~~i~~~ 177 (364)
T 3obw_A 101 DAPERFGIKGAH--HTINLDIGDEIIIIKQQ-WNKYVLDRLKRQANKRSRIIIALVDFDEYLIAIPFEQGIKILSEKSLR 177 (364)
T ss_dssp ECCGGGCCTTCE--EEEEECTTCEEEEECSC-C--------------CCCEEEEEEETTEEEEEEECSSCEECCCEEECG
T ss_pred eccccccccceE--EEEEEcCCCeEEEEEcc-CCHHHHHHHHHHhCcCCCEEEEEEECCcEEEEEEeCCEEEEEEEEEee
Confidence 766333345888 99999999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEecChhcHHHhhhccCCChhhhcceeEE
Q 013725 175 LPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNV 254 (437)
Q Consensus 175 vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~f~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~l~~~vi~~ 254 (437)
+|+||+ +++++||++|++.+.+++. +.++++|||||||++|++|.+ +|+++++++.+.+
T Consensus 178 iPkK~~--------------~~~~~f~~~V~e~~~~~~~-----~~~v~~iIlaGPg~~K~~f~~--~l~~~~~~~~i~~ 236 (364)
T 3obw_A 178 PLNEEE--------------GIIEQNALEIATELAEYVK-----QYDPDAILLAGPGFFKEEVSK--KVNAILKNKKIYI 236 (364)
T ss_dssp GGCSST--------------THHHHHHHHHHHHHHHHHH-----HHCCSEEEEECSSSHHHHHHH--HHHTTTCCSEEEE
T ss_pred Cccchh--------------HHHHHHHHHHHHHHHHHhc-----cccCCEEEEECChHHHHHHHH--HHHHHhhcCeEEE
Confidence 999963 4568999999999999853 578999999999999999996 6888887777789
Q ss_pred EeCCCCCcccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEcHHHHHHHHHhCCccEEEeccCccccce
Q 013725 255 VDVSYGGENGFNQAIELS--AEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRY 332 (437)
Q Consensus 255 v~~s~~~~~gl~E~l~~~--~~~l~~~~~~~e~~ll~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~ 332 (437)
+++||++++|++|+++++ +++|+++++++|+++|++|++++++++|++|||+++|.+|+++|||+||||+|++.
T Consensus 237 vd~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~---- 312 (364)
T 3obw_A 237 DSVSSATRAGLHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLL---- 312 (364)
T ss_dssp ECCSCSSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGG----
T ss_pred EeCCCCchHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCCcEEEEeccCc----
Confidence 999999999999999984 69999999999999999999999999999999999999999999999999999997
Q ss_pred eeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHHHHHHHhcCCeEEEeCCCCchhhhhhcccccEEE
Q 013725 333 VLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCTLEFVTNKSQEGSQFCRGFGGIGG 412 (437)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l~~~a~~~ga~V~vvs~~~e~G~q~l~~~GGIaA 412 (437)
++. + + ..+.+++|++.|+++||+|+|||++|++|+| |++||||||
T Consensus 313 --r~~----------------------------d---~-~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~q-L~~lGGIAA 357 (364)
T 3obw_A 313 --SSD----------------------------E---Q-ERLTIERMLEDIENKRGEVILVPKESPIYFE-LKNLTGILA 357 (364)
T ss_dssp --SSC----------------------------H---H-HHHHHHHHHHHHHTTTCEEEEECTTSTTHHH-HHHTTTEEE
T ss_pred --ccc----------------------------c---c-hHHHHHHHHHHHHhcCCEEEEECCCCCCchh-hhcCCcEEE
Confidence 321 0 1 3566899999999999999999999999999 699999999
Q ss_pred EeecccC
Q 013725 413 ILRYQLD 419 (437)
Q Consensus 413 iLRy~~~ 419 (437)
|||||++
T Consensus 358 iLRy~i~ 364 (364)
T 3obw_A 358 ILRFRIN 364 (364)
T ss_dssp EESSCCC
T ss_pred EEeccCC
Confidence 9999985
No 7
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.7e-59 Score=469.13 Aligned_cols=329 Identities=18% Similarity=0.290 Sum_probs=278.8
Q ss_pred CCcceEEEEeCCCCChHHHHhhhh-hhhhhhhhhhhhhhhhhhh-HhHHHHHHH---------hh---cccccCCCeEEE
Q 013725 29 NGTSMISLIMPPRDQISRVTKMLG-DEFGTASNIKSRVNRQSVL-AAITSAQQR---------LK---LYNKVPPNGLVL 94 (437)
Q Consensus 29 ~~t~lvSlyip~~~~~~~v~~~l~-~e~~~a~nik~~~~r~~v~-~al~~~~~r---------l~---~~~~~~~~Gl~~ 94 (437)
++.+.|+|.+...+|+|+++|++. .+...|...|. +++.+.. ++-...+.+ +. ..+.++.+|.++
T Consensus 8 ~~~g~v~l~pE~~dDlw~ly~li~~gD~v~a~T~Rk-v~~~~~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~Lri~G~i~ 86 (357)
T 3j15_A 8 PKEGKVKVKAETLDDLWHLYHIIDPGDIVYAKTLRK-QAQRADSLRAEKVEVIPVFLGVQAEKINFHKFANQVRVTGPIV 86 (357)
T ss_dssp TTSSSEECCCCSHHHHHHHHHHCCSSCEEECCCCCC-CCCCCSSSCCCCCCCCCCCCEEECSCEEEETTTTEEEECCBEE
T ss_pred CCCceEEEEECChHHHHHHHHhCCCCCEEEEEEEEE-EEcCCCCcCCCccEEEEEEEEEEEEEEEecCCCCEEEEEEEEE
Confidence 455689999999999999999998 65555554442 2222110 000000011 11 124678899999
Q ss_pred EeccccCCCCCeeEEEEeecCCCcceeeeeeccCccchHHHHHhhc--cCCcEEEEEEECCceEEEEEeCCeEEEEeEEe
Q 013725 95 YTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLE--SDDKFGFIVMDGNGTLFGTLSGNTREVLHKFT 172 (437)
Q Consensus 95 fa~~~~~~~G~~~~~tl~i~p~~~v~~~~~~~~~~~~l~~L~~~~~--~~~~~~vvvvd~~~A~i~~~~g~~~~~~~~~~ 172 (437)
.+++...+.|+| ||++++||+||+++||. |+.||++||.+|++ .++.+++|+||+++|.||++++++++++.+++
T Consensus 87 ~~~~~~v~~G~~--hT~~ie~~~~i~i~k~~-w~~~~~e~L~ea~~~~~~~~~~~Vv~d~g~A~i~~l~~~~~~~~~~i~ 163 (357)
T 3j15_A 87 YASREDVPLGKY--HTIAIEQGTVVTIQKPR-WKEHHIERLKEAVAASKRARVMIVVIDDGEADMALVREYGVEILNSIR 163 (357)
T ss_dssp ECCCSSCCCSSB--CCEEECSSCCEEECTTC-CCHHHHHHHHHSCSSCCCSCCCEEEECSSCEEEEEEETTEEEEEECCC
T ss_pred eccccccccccE--EEEEecCCCeEEEEEec-CCHHHHHHHHHHHhccccCcEEEEEEECCcEEEEEEeCCEEEEEEEEE
Confidence 987333457999 99999999999999995 99999999999999 67899999999999999999999999999999
Q ss_pred ecCCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEecChhcHHHhhhccCCCh---hhhc
Q 013725 173 VDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDP---RLQA 249 (437)
Q Consensus 173 ~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~f~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~---~l~~ 249 (437)
.++|+||+ |++ +++++++||++|++.+.++|. +.++++|||||||++|+.|.+ +|++ ++++
T Consensus 164 ~~ipkK~~---~~~------~e~~~~~f~~~Vae~~~~~~~-----~~~v~~iilaGPg~~k~~f~~--~l~~~~~~l~~ 227 (357)
T 3j15_A 164 HNLGGKRY---NTD------RESEEMKFFHDVAKTMEEVMK-----RENVEKAIVAGPGFVKEDFYK--FLKEKYPELAK 227 (357)
T ss_dssp CCSCSSSS---SCC------CCHHHHHHHHHHHHHHHHHHH-----HHTCCCCEECCSTTHHHHHHH--HHHHHSCCSSC
T ss_pred ecCCCCcc---cch------HHHHHHHHHHHHHHHHHHHhc-----ccCCCEEEEECChHHHHHHHH--HHHHhhHHhhC
Confidence 99999975 443 578899999999999999974 468999999999999999995 5776 6788
Q ss_pred ceeEEEeCCCCCcccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEcHHHHHHHHHhCCccEEEeccCc
Q 013725 250 KILNVVDVSYGGENGFNQAIELS--AEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENL 327 (437)
Q Consensus 250 ~vi~~v~~s~~~~~gl~E~l~~~--~~~l~~~~~~~e~~ll~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l 327 (437)
+++ ++++|+++++|++|+++++ +++|+++++++|+++|++|++++++++|++|||+++|.+|+++|||+||||+|++
T Consensus 228 kvv-~v~~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l 306 (357)
T 3j15_A 228 KVV-IEDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEEAVNYGAVETLLVLDEL 306 (357)
T ss_dssp EEC-CCCCSCCHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHHHHHHTCEEEEEEEHHH
T ss_pred eEE-EEeCCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEeccc
Confidence 886 8999999999999999996 7999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHHHHHHHhcCCeEEEeCCCCchhhhhhccc
Q 013725 328 DINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCTLEFVTNKSQEGSQFCRGF 407 (437)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l~~~a~~~ga~V~vvs~~~e~G~q~l~~~ 407 (437)
. +++ ..+.+++|++.|+++||+|+|||++|++|+| |++|
T Consensus 307 ~------r~~----------------------------------~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~q-L~~l 345 (357)
T 3j15_A 307 L------KGE----------------------------------LREKVEELMDAVRYSRGEVVVVSSEHEGGEK-LKAL 345 (357)
T ss_dssp H------TSS----------------------------------CCHHHHHHHHHHHHTTCEEEEECSSSTTHHH-HHHH
T ss_pred c------ccc----------------------------------chHHHHHHHHHHHHcCCEEEEECCCCCcchh-hhcC
Confidence 7 211 1334789999999999999999999999999 6999
Q ss_pred ccEEEEeecccC
Q 013725 408 GGIGGILRYQLD 419 (437)
Q Consensus 408 GGIaAiLRy~~~ 419 (437)
||||||||||++
T Consensus 346 gGiaAiLRy~ip 357 (357)
T 3j15_A 346 GGLAALLRFRVK 357 (357)
T ss_dssp CSEEEEESSCCC
T ss_pred CcEEEEEeccCC
Confidence 999999999986
No 8
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=100.00 E-value=7.2e-58 Score=454.61 Aligned_cols=313 Identities=19% Similarity=0.273 Sum_probs=253.0
Q ss_pred CCcceEEEEeCCCCChHHHHhhhh-hhhhhhhhhhhhhhhhhhhHhHHHHHHHhhcc--------------cccCCCeEE
Q 013725 29 NGTSMISLIMPPRDQISRVTKMLG-DEFGTASNIKSRVNRQSVLAAITSAQQRLKLY--------------NKVPPNGLV 93 (437)
Q Consensus 29 ~~t~lvSlyip~~~~~~~v~~~l~-~e~~~a~nik~~~~r~~v~~al~~~~~rl~~~--------------~~~~~~Gl~ 93 (437)
++.+.|+|.+...+|+|+++|++. .+...|.. | |+.+.+..+.-+. +|...+ +.++.+|.+
T Consensus 10 ~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T-R-kv~~~~~~~~~~~--er~~~~L~i~Ve~ief~~~~~~Lri~G~i 85 (352)
T 3oby_A 10 DNEGEIKLIPETLDDLWHLRFIIEKGDVVFATT-K-RASQSSDKLRSDK--EMVTVRLGIEVEKVEFHRFANRLRVSGKI 85 (352)
T ss_dssp TTEEEEEEECCSHHHHHHHHHHSCTTCEEEECC-C------------------CCCCEEEEEEEEEECSSSSCEEEEEEE
T ss_pred CCceeEEEEeCChHHHHHHHHhccCCCEEEEEE-E-EEeccCCCCCcce--EEEEEEEEEEEEEEEecCCCCEEEEEEEE
Confidence 456799999999999999999999 66666655 3 3433332221122 443321 234456666
Q ss_pred EEeccccCCCCCeeEEEEeecCCCcceeeeeeccCccchHHHHHhhc--cCCcEEEEEEECCceEEEEEeCCeEEEEeEE
Q 013725 94 LYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLE--SDDKFGFIVMDGNGTLFGTLSGNTREVLHKF 171 (437)
Q Consensus 94 ~fa~~~~~~~G~~~~~tl~i~p~~~v~~~~~~~~~~~~l~~L~~~~~--~~~~~~vvvvd~~~A~i~~~~g~~~~~~~~~ 171 (437)
+.++. .|+| ||++++||+||+++| ||+.|+++||.+|++ ....+++|+||+++|.||++++++++++.++
T Consensus 86 ~~~~~----~G~~--hT~~iep~~~i~i~k--~w~~~~~e~L~ea~~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~~~i 157 (352)
T 3oby_A 86 VAGIE----ESGY--HTLNITVGKELSIIK--KWKPEQLERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEIFEE 157 (352)
T ss_dssp EEC--------CE--EEEEECTTCCEEEEE--ECCHHHHHHHHHHHTTSCCCCEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EecCC----CCeE--EEEEEeCCCeEEEEE--cCCHHHHHHHHHHhhccccCcEEEEEEECCcEEEEEEeCCEEEEEEEE
Confidence 65542 2788 999999999999999 899999999999999 6789999999999999999999999999999
Q ss_pred eecCCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEecChhcHHHhhhccCCCh---hhh
Q 013725 172 TVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDP---RLQ 248 (437)
Q Consensus 172 ~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~f~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~---~l~ 248 (437)
+.++|+||+ ++ | ++||++|++.+.++ ++++|||||||++|++|.+ +|++ +++
T Consensus 158 ~~~ipkK~g---~~--r---------~~F~~~V~e~~~~~---------~v~~iIlaGPg~~K~~f~~--~l~~~~~~l~ 212 (352)
T 3oby_A 158 RMGYGKGMG---DS--R---------KEFFGEVAAKLESF---------DFKYLIVAGPGFAKNDFLD--FLKERYPEMA 212 (352)
T ss_dssp EC-----------C--C---------CCHHHHHHHHHHHH---------CCSEEEEECSTTHHHHHHH--HHHHHCHHHH
T ss_pred eccCCCccc---hh--H---------HHHHHHHHHHHHhc---------CCCEEEEECCHHHHHHHHH--HHHHHHHHhh
Confidence 999999862 32 1 68999999999887 5899999999999999996 5665 788
Q ss_pred cceeEEEeCCCCCcccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEcHHHHHHHHHhCCccEEEeccC
Q 013725 249 AKILNVVDVSYGGENGFNQAIELS--AEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWEN 326 (437)
Q Consensus 249 ~~vi~~v~~s~~~~~gl~E~l~~~--~~~l~~~~~~~e~~ll~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~ 326 (437)
++++ ++++||++++|++|+++++ +++|+++++++|+++|++|+++++++ |++|||+++|.+|+++|||+||||+|+
T Consensus 213 ~kvv-~v~~s~gg~~gl~Evl~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d-~~a~YG~~eV~~Ale~GAVetLLIsd~ 290 (352)
T 3oby_A 213 KNAV-VVDVSSVGSRGFIEILKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKG-ERVAYGLDEVREAHNYRAIEVLLVADE 290 (352)
T ss_dssp TTEE-ECCCCCCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSEEESHHHHHHHHTTTCEEEEEEEHH
T ss_pred CcEE-EEECCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEECHHHHHHHHHcCCceEEEEecc
Confidence 9985 8999999999999999998 79999999999999999999999998 999999999999999999999999999
Q ss_pred ccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHHHHHHHhcCCeEEEeCCCCchhhhhhcc
Q 013725 327 LDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCTLEFVTNKSQEGSQFCRG 406 (437)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l~~~a~~~ga~V~vvs~~~e~G~q~l~~ 406 (437)
+. ++.. ..+.+++|++.|+++||+|+|||++|++|+| |++
T Consensus 291 l~------r~~r---------------------------------~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~q-L~~ 330 (352)
T 3oby_A 291 FL------LEER---------------------------------EKWDVDGLLREVEESGGKVVIMSTEFEPGKR-LMS 330 (352)
T ss_dssp HH------HHHT---------------------------------TTSCHHHHHHHHHHTTCEEEEECTTSHHHHH-HHH
T ss_pred ch------hccc---------------------------------chHHHHHHHHHHHHcCCEEEEEcCCCcchhH-Hhc
Confidence 97 3210 0123689999999999999999999999999 699
Q ss_pred cccEEEEeecccCc
Q 013725 407 FGGIGGILRYQLDI 420 (437)
Q Consensus 407 ~GGIaAiLRy~~~~ 420 (437)
|||||||||||++.
T Consensus 331 lGGIaAiLRy~~~~ 344 (352)
T 3oby_A 331 LGGIAALLRFNVKG 344 (352)
T ss_dssp TTSEEEEESSCCCC
T ss_pred CCCEEEEEecCCcc
Confidence 99999999999983
No 9
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=100.00 E-value=5.1e-58 Score=459.29 Aligned_cols=327 Identities=15% Similarity=0.225 Sum_probs=273.1
Q ss_pred cceEEEEeCCCCChHHHHhhhh-hhhhhhhhhhhhhhhhhhhHhHHHHHHHhhcc------------cccCCCeEEEEec
Q 013725 31 TSMISLIMPPRDQISRVTKMLG-DEFGTASNIKSRVNRQSVLAAITSAQQRLKLY------------NKVPPNGLVLYTG 97 (437)
Q Consensus 31 t~lvSlyip~~~~~~~v~~~l~-~e~~~a~nik~~~~r~~v~~al~~~~~rl~~~------------~~~~~~Gl~~fa~ 97 (437)
.+.|+|.+...+|+|+++|.+. .+...+...|. +.+ ++-.+.+.++.+. +.++.+|.++..+
T Consensus 12 ~g~v~l~pe~~dDlw~ly~li~~gD~v~~~t~R~-v~~----g~~~~~r~~~~l~i~Ve~~~f~~~~~~Lri~G~i~~~~ 86 (358)
T 3agj_B 12 RRIVRLRPESEEDLWLLRITLRPGDVVRKRTSRD-VPV----GSGRKERVVMTLRIRLDSIEFQPFTGKLRISGIVVEGP 86 (358)
T ss_dssp SCEEEEECCSHHHHHHHHHHCCTTCEEEEEEEEE-ECC----SSSCCEEEEEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEE-Eec----CCCccEEEEEEEEEEEEEEEcCCCCCEEEEEEEEccCC
Confidence 4589999999999999999998 55555544431 111 1111111111111 1223344444322
Q ss_pred -cccCCCCCeeEEEEeecCCCcceeeeeeccCccchHHHHHhhccCCcEEEEEEECCceEEEEEeCCeEEEEeEEeecCC
Q 013725 98 -TVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLP 176 (437)
Q Consensus 98 -~~~~~~G~~~~~tl~i~p~~~v~~~~~~~~~~~~l~~L~~~~~~~~~~~vvvvd~~~A~i~~~~g~~~~~~~~~~~~vp 176 (437)
..+ ..|++ ||++++||+||+++||.||++||++||.++ +.+..|++|+||+++|.||++++++++++.+++.++|
T Consensus 87 ~~~v-~~g~~--ht~~ie~~~~i~i~k~~~w~~~~le~L~~~-~~~~~~~~vvvd~~~A~i~~l~~~~~~~~~~i~~~vp 162 (358)
T 3agj_B 87 DEFG-VKGRR--HSTAVSIGTWLVVERDKGWSEQELERLAAG-RARGTAVIAAVDYDEFALAVLAGHGMKILEDTSARLP 162 (358)
T ss_dssp GGGC-CTTSE--EEEEEETTCCEEEECTTCCCHHHHHHHHHC-CCCCEEEEEEECSSEEEEEEEESSCEEEEEEEECCCC
T ss_pred Cccc-ccccE--EEEEEeCCCcEEEEEecCCCHhhHHHHHhh-CcCCCEEEEEEECCcEEEEEEeCCEEEEEEEEEecCC
Confidence 111 23777 999999999999999867999999999999 8889999999999999999999999999999999999
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEecChhcHHHhhhccCCChhhhcceeEEEe
Q 013725 177 KKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVD 256 (437)
Q Consensus 177 ~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~f~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~l~~~vi~~v~ 256 (437)
+|| || | +++++++||++|++++.++|. +.++++||||||+++|+.|. ++|+++++++++.+++
T Consensus 163 kK~--g~--q------~e~~~~~f~~~Va~~l~~~~~-----~~~~~~lIlAGpg~~k~~f~--~~L~~~~~~~~i~~v~ 225 (358)
T 3agj_B 163 GKD--DP--S------REQEVEKYVDRAAKRIVEEAA-----RHRSPIAVIAGPGQLKTSVA--EKVQRAMPSLKVATVD 225 (358)
T ss_dssp CTT--ST--T------HHHHHHHHHHHHHHHHHHHHH-----HHTCSEEEEEESSSHHHHHH--HHHHHHSTTSEEEEEE
T ss_pred CCC--ch--H------HHHHHHHHHHHHHHHHHHHhc-----ccCCcEEEEECCHHHHHHHH--HHHHHHhhhceEEEEE
Confidence 998 43 3 688999999999999999973 45799999999999999998 5799999998778999
Q ss_pred CCCCCcccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEcHHHHHHHHHhCCccEEEeccCccccceee
Q 013725 257 VSYGGENGFNQAIELS--AEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVL 334 (437)
Q Consensus 257 ~s~~~~~gl~E~l~~~--~~~l~~~~~~~e~~ll~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~ 334 (437)
+|+++++|++|+++++ +++|++.++++|+++|++|++++++++|++|||+++|.+|+++|||+||||+|++.
T Consensus 226 ~s~g~~~gl~E~l~~~~v~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~------ 299 (358)
T 3agj_B 226 TSMGGVAGVREALRRESVTRILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLL------ 299 (358)
T ss_dssp CSCCHHHHHHHHTTSHHHHHHTTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHH------
T ss_pred cCCCCchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCceEEEEecccc------
Confidence 9999999999999996 79999999999999999999999999999999999999999999999999999997
Q ss_pred ecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHHHHHHHhcCCeEEEeCCCCchhhhhhcccccEEEEe
Q 013725 335 KNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCTLEFVTNKSQEGSQFCRGFGGIGGIL 414 (437)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l~~~a~~~ga~V~vvs~~~e~G~q~l~~~GGIaAiL 414 (437)
+|+ + ++..+.+++|++.|+++||+|+|||++|++|+| |++||||||||
T Consensus 300 r~~--d-----------------------------~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~q-L~~~gGIaAiL 347 (358)
T 3agj_B 300 HSP--D-----------------------------DAVREAVDEALRLVESMGGRVIIIPGDSPAGER-LVSFGGVIALL 347 (358)
T ss_dssp TCS--S-----------------------------HHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHH-HGGGTTEEEEE
T ss_pred cCC--C-----------------------------hhhHHHHHHHHHHHHHcCCEEEEECCCCcchhh-hhcCCcEEEEE
Confidence 664 1 123455899999999999999999999999999 79999999999
Q ss_pred ecccCcc
Q 013725 415 RYQLDIR 421 (437)
Q Consensus 415 Ry~~~~~ 421 (437)
|||++.+
T Consensus 348 Ry~i~~~ 354 (358)
T 3agj_B 348 RYPVPQE 354 (358)
T ss_dssp SSCCCGG
T ss_pred eccCchh
Confidence 9999853
No 10
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=100.00 E-value=4e-56 Score=442.45 Aligned_cols=316 Identities=16% Similarity=0.248 Sum_probs=250.6
Q ss_pred cceEEEEeCCCCChHHHHhhhh-hhhhhhhhhhhhhhhhh-hhHhHHHHHHHhh------------cccccCCCeEEEEe
Q 013725 31 TSMISLIMPPRDQISRVTKMLG-DEFGTASNIKSRVNRQS-VLAAITSAQQRLK------------LYNKVPPNGLVLYT 96 (437)
Q Consensus 31 t~lvSlyip~~~~~~~v~~~l~-~e~~~a~nik~~~~r~~-v~~al~~~~~rl~------------~~~~~~~~Gl~~fa 96 (437)
.+.|+|.+...+|+|+++|.+. .+...|...|. +.+.+ ..++-.+.+.++. ..+.++++|+++||
T Consensus 10 ~g~v~l~pE~~dDlw~lynli~~GD~v~a~T~Rk-v~~~~~~~g~~~~er~~~~l~i~Ve~v~f~~~~~~Lri~G~vv~~ 88 (347)
T 2qi2_A 10 NSTYRIRIESLDDLWYLRNILSEGDEVSAITFRR-VEESADVQRSRERERIPITIRLKVEKIEFQDFDNRLRILGTVIEG 88 (347)
T ss_dssp TTEEEEECCSSHHHHHHHHHCCTTCEEEEEEC--------------CCEEEEEEEEEEECCTTCSCEEEEEEECC-----
T ss_pred CcEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEE-EecccccCCCCccEEEEEEEEEEEEEEEccCCCCEEecceEEEEc
Confidence 4589999999999999999998 55555554442 22111 1111111111111 12457889999999
Q ss_pred ccccCCCCCeeEEEEeecCCCcceeeeeeccCccchHHHHHhhcc--CCcEEEEEEECCceEEEEEeCCeEEEEeEEeec
Q 013725 97 GTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLES--DDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVD 174 (437)
Q Consensus 97 ~~~~~~~G~~~~~tl~i~p~~~v~~~~~~~~~~~~l~~L~~~~~~--~~~~~vvvvd~~~A~i~~~~g~~~~~~~~~~~~ 174 (437)
+.. ..|++ ||++++||+||+++| ||+.|+++||.+|++. ...|++|+||+++|.||++++++++++.+++.+
T Consensus 89 ~~~--~~g~~--htl~ie~~~~i~i~k--~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~~~~i~~~ 162 (347)
T 2qi2_A 89 PED--TKGKH--QSITVTVDSEISITK--EWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQQVGTVYSG 162 (347)
T ss_dssp ------CCSE--EEEEECTTCEEEEES--CCCHHHHHHHHHHTCHHHHCCEEEEEECSSEEEEEEECSSCEEEEEEEECC
T ss_pred CCC--CCccE--EEEEEcCCCeEEEEE--cCCHhHHHHHHHHhccccCCCEEEEEEeCCcEEEEEEECCEEEEEEEEeec
Confidence 975 35777 999999999999966 9999999999999997 688999999999999999999999999999999
Q ss_pred CCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEecChhcHHHhhhccCCChhhhcceeEE
Q 013725 175 LPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNV 254 (437)
Q Consensus 175 vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~f~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~l~~~vi~~ 254 (437)
+|+|++ || +|.| ++||++|++.+.++ + ++|||||||++|+.|. +++++++++++ .+
T Consensus 163 ~~Kk~~---~s--~f~r------~~F~~~V~~~~~~~---------d-~~lIlaGPg~~k~~f~--~~l~~~~~~~i-~~ 218 (347)
T 2qi2_A 163 RSGKYA---EG--NYSE------ASYFDQIVNALKNY---------S-NSIIILGPGFARDRFA--RYCAQRGVNVI-GS 218 (347)
T ss_dssp HHHHC---------CCH------HHHHHHHHHHHHTC---------C-SCEEEEESSSHHHHHH--HHHHHTSCCCS-CC
T ss_pred CCCccc---cc--hhhH------HHHHHHHHHHHHhc---------C-CeEEEECCHHHHHHHH--HHHHHhhcceE-EE
Confidence 887764 34 3544 69999999999774 3 8999999999999998 46888877665 68
Q ss_pred EeCCCCCcccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEcHHHHHHHHHhCCccEEEeccCccccce
Q 013725 255 VDVSYGGENGFNQAIELS--AEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRY 332 (437)
Q Consensus 255 v~~s~~~~~gl~E~l~~~--~~~l~~~~~~~e~~ll~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~ 332 (437)
+++||++++|++|+++++ +++|+++++++|+++|++|+++++++ ++|||+++|++|+++|||+||||+|++.
T Consensus 219 v~~s~~~~~gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d--~~~YG~~eV~~Ale~GAVetLlV~d~l~---- 292 (347)
T 2qi2_A 219 FPANRTDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAVKKD--MGVYGRDQTESALQMGALSDLIITDEMF---- 292 (347)
T ss_dssp EECSSSSHHHHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTT--CEEESHHHHHHHHHTTCEEEEEEEHHHH----
T ss_pred EecCCCccccHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CEEEcHHHHHHHHHcCCCeEEEEecccc----
Confidence 999999999999999999 89999999999999999999999987 9999999999999999999999999987
Q ss_pred eeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHHHHHHHhcCCeEEEeCCCCchhhhhhcccccEEE
Q 013725 333 VLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCTLEFVTNKSQEGSQFCRGFGGIGG 412 (437)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l~~~a~~~ga~V~vvs~~~e~G~q~l~~~GGIaA 412 (437)
+ +.+ +++|++.|+++||+|+|||++|++|+| |++||||||
T Consensus 293 --r------------------------------------r~~-~~~L~e~~~~~G~~V~ivs~~~e~G~q-L~~lGGIAa 332 (347)
T 2qi2_A 293 --R------------------------------------TED-GRRSLSIAQTVGTRIHIVSVSNDPGQI-VKKFGGFAG 332 (347)
T ss_dssp --T------------------------------------SHH-HHHHHHHHHHHTCEEEEECTTSHHHHH-HHHTTSEEE
T ss_pred --c------------------------------------chh-HHHHHHHHHHcCCEEEEECCCCcchHH-HHhcCCEEE
Confidence 1 012 589999999999999999999999999 699999999
Q ss_pred EeecccCcccc
Q 013725 413 ILRYQLDIRSY 423 (437)
Q Consensus 413 iLRy~~~~~~~ 423 (437)
|||||++..++
T Consensus 333 iLRy~~~~~~~ 343 (347)
T 2qi2_A 333 ILRYRVQLEHH 343 (347)
T ss_dssp EECSCC-----
T ss_pred EEeccchhhhc
Confidence 99999985443
No 11
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=100.00 E-value=6.5e-41 Score=299.03 Aligned_cols=162 Identities=25% Similarity=0.435 Sum_probs=147.8
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeec
Q 013725 257 VSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKN 336 (437)
Q Consensus 257 ~s~~~~~gl~E~l~~~~~~l~~~~~~~e~~ll~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~ 336 (437)
-||+|++|++|+|++++++|+++++++|+++|++||+++++++|++|||+++|++||++|||+||||+|++...|++++|
T Consensus 2 ~sy~ge~Gl~E~i~~~~~~L~~~k~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c 81 (166)
T 3ir9_A 2 NAYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKC 81 (166)
T ss_dssp -CCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEE
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEEC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEe--cccccccccCCccCccccchhhhhhhccHHHHHHHHHHhcCCeEEEeCCCCchhhhhhcccccEEEEe
Q 013725 337 SATGEIVIKH--LNRDQEADQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCTLEFVTNKSQEGSQFCRGFGGIGGIL 414 (437)
Q Consensus 337 ~~~~~~~~~~--~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l~~~a~~~ga~V~vvs~~~e~G~q~l~~~GGIaAiL 414 (437)
++||+..+.+ ..|.+ .......||.||.+++++++.++++||++.|+++||+|+|||++|++|.||+++||||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~~~c~~~g~~~~~~e~~~~ve~L~e~~~~~G~~v~ivs~~~eeG~ql~~~fGGIaaiL 160 (166)
T 3ir9_A 82 SVCGYENKWTRRWKPGE-PAPAAGNCPKCGSSLEVTDVTDIVDEFSELADKSNAKVVFVSTDFDEGSQLMNAFGGIAAIL 160 (166)
T ss_dssp SSSSCEEEEEECCCC---CCCCCCBCTTTCCBEEEEEEEEHHHHHHHHHHHTTCEEEEECSCSHHHHHHHHTSTTEEEEE
T ss_pred CCCCceeEEEeecChhh-cccccccccccCccchhhhHHHHHHHHHHHHHhcCCEEEEECCCChhHHHHHHcCCCEEEEE
Confidence 9999765443 34443 22345689999999999999999999999999999999999999999999779999999999
Q ss_pred ecccC
Q 013725 415 RYQLD 419 (437)
Q Consensus 415 Ry~~~ 419 (437)
|||++
T Consensus 161 Ry~i~ 165 (166)
T 3ir9_A 161 RYNTG 165 (166)
T ss_dssp SSCCC
T ss_pred eccCC
Confidence 99986
No 12
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=99.95 E-value=4.6e-28 Score=205.59 Aligned_cols=108 Identities=18% Similarity=0.358 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEeccccccc
Q 013725 274 EILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEA 353 (437)
Q Consensus 274 ~~l~~~~~~~e~~ll~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (437)
++|+++++++|+++|++|++++++++|++|||+++|.+|+++|||+||||+|++. +|+ |
T Consensus 11 ~~l~~~k~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~------r~~-d-------------- 69 (124)
T 1x52_A 11 SRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELF------RHQ-D-------------- 69 (124)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHH------TCS-S--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhhh------cCC-C--------------
Confidence 5678999999999999999999999999999999999999999999999999996 665 1
Q ss_pred ccCCccCccccchhhhhhhccHHHHHHHHHHhcCCeEEEeCCCCchhhhhhcccccEEEEeecccC
Q 013725 354 DQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLD 419 (437)
Q Consensus 354 ~~~~~~cp~~~~~~~~~~~~~~v~~l~~~a~~~ga~V~vvs~~~e~G~q~l~~~GGIaAiLRy~~~ 419 (437)
| .++.++++ |++.|+++||+|+|||+.|++|+| |++|||||||||||++
T Consensus 70 -------~--------~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~q-L~~~gGIaAiLRy~i~ 118 (124)
T 1x52_A 70 -------V--------ATRSRYVR-LVDSVKENAGTVRIFSSLHVSGEQ-LSQLTGVAAILRFPVP 118 (124)
T ss_dssp -------H--------HHHHHHHH-HHHHHHHTTCEEEEECSSSHHHHH-HHTTTTEEEEESSCCT
T ss_pred -------h--------HHHHHHHH-HHHHHHHcCCEEEEECCCCccHHH-HhcCCCEEEEEecCCc
Confidence 1 13456677 999999999999999999999999 5999999999999997
No 13
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.17 E-value=0.42 Score=37.87 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=48.0
Q ss_pred CCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHH
Q 013725 299 TGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEW 378 (437)
Q Consensus 299 ~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~ 378 (437)
.|..+.|.++|.+|++.|.+..+++..|.. .+....
T Consensus 13 agk~v~G~~~v~kai~~gka~lViiA~D~~--------------------------------------------~~~~~~ 48 (99)
T 3j21_Z 13 TGKVVLGSNETIRLAKTGGAKLIIVAKNAP--------------------------------------------KEIKDD 48 (99)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEECCCC--------------------------------------------HHHHHH
T ss_pred hCCEeECHHHHHHHHHcCCccEEEEeCCCC--------------------------------------------HHHHHH
Confidence 488999999999999999999999987632 112356
Q ss_pred HHHHHHhcCCeEEEe-CCCCchhhh
Q 013725 379 FANEYKQFGCTLEFV-TNKSQEGSQ 402 (437)
Q Consensus 379 l~~~a~~~ga~V~vv-s~~~e~G~q 402 (437)
+...+...+..+..+ .+..+-|..
T Consensus 49 i~~~c~~~~ip~~~~~~s~~eLG~a 73 (99)
T 3j21_Z 49 IYYYAKLSDIPVYEFEGTSVELGTL 73 (99)
T ss_dssp HHHHHHHTTCCEEEECCCSCGGGGT
T ss_pred HHHHHHHcCCCEEEeCCCHHHHHHH
Confidence 677888999998666 888888876
No 14
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=93.90 E-value=0.23 Score=39.55 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=54.1
Q ss_pred ccCCCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccH
Q 013725 296 SQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSL 375 (437)
Q Consensus 296 ~~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~ 375 (437)
++..|+.+.|.++|.+|++.|.+..+++..|... +.
T Consensus 13 a~kagk~v~G~~~v~kai~~gka~lViiA~D~~~--------------------------------------------~~ 48 (101)
T 3on1_A 13 AARARQLLTGEEQVVKAVQNGQVTLVILSSDAGI--------------------------------------------HT 48 (101)
T ss_dssp HHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCH--------------------------------------------HH
T ss_pred HHHHCCEeECHHHHHHHHHcCCCcEEEEeCCCCH--------------------------------------------HH
Confidence 3345899999999999999999999999876541 11
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCchhhhhhcccccEEEEe
Q 013725 376 LEWFANEYKQFGCTLEFVTNKSQEGSQFCRGFGGIGGIL 414 (437)
Q Consensus 376 v~~l~~~a~~~ga~V~vvs~~~e~G~q~l~~~GGIaAiL 414 (437)
...+...+...+..+.++.+..+-|..+=+..-.+.||+
T Consensus 49 ~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~~~~~vai~ 87 (101)
T 3on1_A 49 KKKLLDKCGSYQIPVKVVGNRQMLGRAIGKHERVVIGVK 87 (101)
T ss_dssp HHHHHHHHHHHTCCEEEESCHHHHHHHTTSSCCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEeCCHHHHHHHhCCcCeEEEEEE
Confidence 245667788889999998888777775222233345553
No 15
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=93.84 E-value=0.22 Score=39.77 Aligned_cols=75 Identities=11% Similarity=0.149 Sum_probs=54.6
Q ss_pred ccCCCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccH
Q 013725 296 SQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSL 375 (437)
Q Consensus 296 ~~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~ 375 (437)
++..|+.+.|.++|.+|++.|.+..+++..|... +.
T Consensus 14 a~kagk~v~G~~~v~kai~~gka~lViiA~D~~~--------------------------------------------~~ 49 (101)
T 3v7q_A 14 ANRARKVVSGEDLVIKEIRNARAKLVLLTEDASS--------------------------------------------NT 49 (101)
T ss_dssp HHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCH--------------------------------------------HH
T ss_pred hhhhhhcccchhhhHHHHhcCceeEEEEeccccc--------------------------------------------cc
Confidence 3445899999999999999999999999876541 01
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCchhhhhhcccccEEEEe
Q 013725 376 LEWFANEYKQFGCTLEFVTNKSQEGSQFCRGFGGIGGIL 414 (437)
Q Consensus 376 v~~l~~~a~~~ga~V~vvs~~~e~G~q~l~~~GGIaAiL 414 (437)
...+...+...+..+.++.+..+-|.-+=+.+-.+.||+
T Consensus 50 ~~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~~~~~~ai~ 88 (101)
T 3v7q_A 50 AKKVTDKCNYYKVPYKKVESRAVLGRSIGKEARVVVAVT 88 (101)
T ss_dssp HHHHHHHHHHTTCCEEEESCHHHHHHHTTSSCCSEEEEC
T ss_pred hhhhcccccccCCCeeeechHHHHHhhhCccceEEEEEe
Confidence 245567788899999999888777765322233455553
No 16
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=93.19 E-value=0.56 Score=38.64 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=49.7
Q ss_pred CCCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHH
Q 013725 298 DTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLE 377 (437)
Q Consensus 298 ~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~ 377 (437)
..|..+.|..+|..|++.|.+..++|+.|... ..++.
T Consensus 17 k~gkl~~G~~~v~kai~~gkakLViiA~D~~~-------------------------------------------~~~~~ 53 (121)
T 2lbw_A 17 KAKNVKRGVKEVVKALRKGEKGLVVIAGDIWP-------------------------------------------ADVIS 53 (121)
T ss_dssp TTTCEEESHHHHHHHHHHSCCCEEEECTTCSC-------------------------------------------TTHHH
T ss_pred HcCCccccHHHHHHHHHcCCceEEEEeCCCCH-------------------------------------------HHHHH
Confidence 45889999999999999999999999876541 11235
Q ss_pred HHHHHHHhcCCeEEEeCCCCchhhh
Q 013725 378 WFANEYKQFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 378 ~l~~~a~~~ga~V~vvs~~~e~G~q 402 (437)
.+...+..+|.-+.++++..+-|..
T Consensus 54 ~l~~lc~~~~VP~~~v~sk~eLG~a 78 (121)
T 2lbw_A 54 HIPVLCEDHSVPYIFIPSKQDLGAA 78 (121)
T ss_dssp HHHHHHHHTCCCEEECCCHHHHHHH
T ss_pred HHHHHHHhcCCcEEEECCHHHHHHH
Confidence 6778888999999999887777765
No 17
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=93.02 E-value=0.76 Score=37.32 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=54.9
Q ss_pred cCCCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHH
Q 013725 297 QDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLL 376 (437)
Q Consensus 297 ~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v 376 (437)
...|..+.|.++|.+|++.|.+..++|+.|... +..
T Consensus 22 ~kagk~~~G~~~t~kai~~gkakLVilA~D~~~--------------------------------------------~~~ 57 (112)
T 3iz5_f 22 MKSGKYTLGYKTVLKTLRSSLGKLIILANNCPP--------------------------------------------LRK 57 (112)
T ss_dssp HTTCEEEESHHHHHHHHHTTCCSEEEECSCCCH--------------------------------------------HHH
T ss_pred HHhCCeeECHHHHHHHHHcCCceEEEEeCCCCH--------------------------------------------HHH
Confidence 345899999999999999999999999876530 113
Q ss_pred HHHHHHHHhcCCeEEEe-CCCCchhhhhhcccc-cEEEEe
Q 013725 377 EWFANEYKQFGCTLEFV-TNKSQEGSQFCRGFG-GIGGIL 414 (437)
Q Consensus 377 ~~l~~~a~~~ga~V~vv-s~~~e~G~q~l~~~G-GIaAiL 414 (437)
..+...|...+..+.++ .+..+-|..+=+.++ .+.||+
T Consensus 58 ~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~~~v~~vaI~ 97 (112)
T 3iz5_f 58 SEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSIL 97 (112)
T ss_dssp HHHHHHHHHTTCCEECCCCTTCTHHHHHCTTCSSCEEEEE
T ss_pred HHHHHHHHHcCCcEEEeCCCHHHHHHHhCCccceEEEEEe
Confidence 56677888999999999 788888876322233 335554
No 18
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=92.65 E-value=0.38 Score=38.54 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=52.7
Q ss_pred CCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHH
Q 013725 299 TGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEW 378 (437)
Q Consensus 299 ~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~ 378 (437)
.|..+.|.++|.+|++.|.+..+++..|... +....
T Consensus 20 agklv~G~~~v~kai~~gkaklViiA~D~~~--------------------------------------------~~~~~ 55 (104)
T 4a18_G 20 SGKATLGYKSTIKAIRNGTAKLVFISNNCPT--------------------------------------------VRKSE 55 (104)
T ss_dssp HSEEEESHHHHHHHHHHTCCCEEEECTTSCH--------------------------------------------HHHHH
T ss_pred hCCEeECHHHHHHHHHcCCceEEEEeCCCCH--------------------------------------------HHHHH
Confidence 4889999999999999999999999876530 01245
Q ss_pred HHHHHHhcCCeEE-EeCCCCchhhhhhcccc-cEEEEee
Q 013725 379 FANEYKQFGCTLE-FVTNKSQEGSQFCRGFG-GIGGILR 415 (437)
Q Consensus 379 l~~~a~~~ga~V~-vvs~~~e~G~q~l~~~G-GIaAiLR 415 (437)
+...+...+..+. ++.+..+-|..+=+.++ .+.||+=
T Consensus 56 i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~D 94 (104)
T 4a18_G 56 IEYYASLAQISIHHFVGSNVELGTACGKYHRCSTMAILD 94 (104)
T ss_dssp HHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEE
T ss_pred HHHHHHHcCCcEEEecCCHHHHHHHhCCccCEEEEEEec
Confidence 5567777889988 58888888876323333 3456653
No 19
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=92.51 E-value=0.25 Score=37.84 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=50.2
Q ss_pred CCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHH
Q 013725 299 TGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEW 378 (437)
Q Consensus 299 ~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~ 378 (437)
.|+.+.|.++|.+|++.|.+..++|+.|... ++...
T Consensus 9 agk~~~G~~~v~kai~~gkaklViiA~D~~~--------------------------------------------~~~~~ 44 (82)
T 3v7e_A 9 AKSIIIGTKQTVKALKRGSVKEVVVAKDADP--------------------------------------------ILTSS 44 (82)
T ss_dssp CSEEEESHHHHHHHHTTTCEEEEEEETTSCH--------------------------------------------HHHHH
T ss_pred cCCeeEcHHHHHHHHHcCCeeEEEEeCCCCH--------------------------------------------HHHHH
Confidence 4889999999999999999999999876540 22467
Q ss_pred HHHHHHhcCCeEEEeCCCCchhhh
Q 013725 379 FANEYKQFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 379 l~~~a~~~ga~V~vvs~~~e~G~q 402 (437)
+...+..++..+.++++..+-|..
T Consensus 45 i~~lc~~~~Ip~~~v~sk~eLG~a 68 (82)
T 3v7e_A 45 VVSLAEDQGISVSMVESMKKLGKA 68 (82)
T ss_dssp HHHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCHHHHHHH
Confidence 788999999999999988777765
No 20
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=90.98 E-value=0.8 Score=37.63 Aligned_cols=84 Identities=15% Similarity=0.259 Sum_probs=56.6
Q ss_pred HHHHHHhccCCCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhh
Q 013725 289 GKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELE 368 (437)
Q Consensus 289 ~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~ 368 (437)
+++++.++.. |..+.|.++|.+|++.|.+..++++.|.....
T Consensus 18 ~k~~~ll~~A-gkl~~G~~~v~kai~~gka~lViiA~D~~p~~------------------------------------- 59 (120)
T 1xbi_A 18 KELLDAVAKA-QKIKKGANEVTKAVERGIAKLVIIAEDVKPEE------------------------------------- 59 (120)
T ss_dssp HHHHHHHHTC-SEEEESHHHHHHHHHHTCCSEEEEESCCSSGG-------------------------------------
T ss_pred HHHHHHHHHc-CCccccHHHHHHHHHcCCceEEEEcCCCChHH-------------------------------------
Confidence 4444445444 78999999999999999999999987764110
Q ss_pred hhhhccHHHHHHHHHHhcCCeEEEeCCCCchhhhhhccc-ccEEEEeec
Q 013725 369 VQEKTSLLEWFANEYKQFGCTLEFVTNKSQEGSQFCRGF-GGIGGILRY 416 (437)
Q Consensus 369 ~~~~~~~v~~l~~~a~~~ga~V~vvs~~~e~G~q~l~~~-GGIaAiLRy 416 (437)
++..|...+...|..+.++.+..+-|..+=+.+ =.++||+-+
T Consensus 60 ------~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~d~ 102 (120)
T 1xbi_A 60 ------VVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINE 102 (120)
T ss_dssp ------GTTTHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEEC
T ss_pred ------HHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCCCEEEEEEecc
Confidence 012445667778888888888777776522221 234566644
No 21
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=90.93 E-value=0.41 Score=39.59 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=47.6
Q ss_pred CCCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHH
Q 013725 298 DTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLE 377 (437)
Q Consensus 298 ~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~ 377 (437)
..|..+.|.++|.+|++.|.+..++++.|..... ++.
T Consensus 28 kagklv~G~~~v~kai~~gka~lViiA~D~~p~~-------------------------------------------~~~ 64 (122)
T 3o85_A 28 SLQAIKRGANEALKQVNRGKAELVIIAADADPIE-------------------------------------------IVL 64 (122)
T ss_dssp HTTCEEESHHHHHHHHHTTCCSEEEEETTCSSGG-------------------------------------------GGT
T ss_pred HhCCEeEcHHHHHHHHHcCCceEEEEeCCCChHH-------------------------------------------HHH
Confidence 3488999999999999999999999987764110 012
Q ss_pred HHHHHHHhcCCeEEEeCCCCchhhh
Q 013725 378 WFANEYKQFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 378 ~l~~~a~~~ga~V~vvs~~~e~G~q 402 (437)
.+...+..+|..+.++.+..+-|..
T Consensus 65 ~l~~lc~~~~VP~~~v~sk~eLG~a 89 (122)
T 3o85_A 65 HLPLACEDKGVPYVFIGSKNALGRA 89 (122)
T ss_dssp THHHHHHTTTCCEEEESCHHHHHHH
T ss_pred HHHHHHHHhCCCEEEECCHHHHHHH
Confidence 4456677888888888887777775
No 22
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=90.81 E-value=1 Score=35.72 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=54.8
Q ss_pred CCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHH
Q 013725 299 TGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEW 378 (437)
Q Consensus 299 ~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~ 378 (437)
.|..+.|.++|.+|++.|.+..++++.|.. .+.+..
T Consensus 14 agkl~~G~~~v~kai~~gka~lViiA~D~~--------------------------------------------~~~~~~ 49 (101)
T 1w41_A 14 TGKIVMGARKSIQYAKMGGAKLIIVARNAR--------------------------------------------PDIKED 49 (101)
T ss_dssp HSEEEESHHHHHHHHHHTCCSEEEEETTSC--------------------------------------------HHHHHH
T ss_pred cCCEeECHHHHHHHHHcCCCcEEEEeCCCC--------------------------------------------HHHHHH
Confidence 378999999999999999999999987632 112356
Q ss_pred HHHHHHhcCCeEEEe-CCCCchhhhhhcccc-cEEEEeeccc
Q 013725 379 FANEYKQFGCTLEFV-TNKSQEGSQFCRGFG-GIGGILRYQL 418 (437)
Q Consensus 379 l~~~a~~~ga~V~vv-s~~~e~G~q~l~~~G-GIaAiLRy~~ 418 (437)
|...+..++..+.++ .+..+-|..+=+.++ .+.||+-...
T Consensus 50 l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~~~vai~d~g~ 91 (101)
T 1w41_A 50 IEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPGA 91 (101)
T ss_dssp HHHHHHHHTCCEEEESSCHHHHHHHTTCSSCCCEEEEEECTT
T ss_pred HHHHHHhcCCCEEEecCCHHHHHHHhCCCCcEEEEEEecCCH
Confidence 667788889998875 777777776323333 2577775443
No 23
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=90.57 E-value=1.2 Score=37.32 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=53.7
Q ss_pred CCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHH
Q 013725 299 TGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEW 378 (437)
Q Consensus 299 ~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~ 378 (437)
.|..+.|.++|.+|++.|.+..+++..|... ..++..
T Consensus 39 agklv~G~~~v~kal~~gkaklViiA~D~~~-------------------------------------------~~~~~~ 75 (135)
T 2aif_A 39 YKQLRKGANEATKALNRGIAEIVLLAADAEP-------------------------------------------LEILLH 75 (135)
T ss_dssp TTCEEESHHHHHHHHHTTCEEEEEEETTCSC-------------------------------------------HHHHHH
T ss_pred cCCcccCHHHHHHHHHcCCCeEEEEecCCCh-------------------------------------------HHHHhH
Confidence 4889999999999999999999999876541 011356
Q ss_pred HHHHHHhcCCeEEEeCCCCchhhhhhcccccE--EEEe
Q 013725 379 FANEYKQFGCTLEFVTNKSQEGSQFCRGFGGI--GGIL 414 (437)
Q Consensus 379 l~~~a~~~ga~V~vvs~~~e~G~q~l~~~GGI--aAiL 414 (437)
+...+..++.-+.++.+..+-|.. +..--++ .||+
T Consensus 76 l~~lc~~~~IP~~~v~sk~eLG~a-~G~~~~v~~vaI~ 112 (135)
T 2aif_A 76 LPLVCEDKNTPYVFVRSKVALGRA-CGVSRPVIAAAIT 112 (135)
T ss_dssp HHHHHHHTTCCEEEESCHHHHHHH-TTCSSCCSEEEEE
T ss_pred HHHHHHhcCCcEEEECCHHHHHHH-hCCCCcEEEEEEE
Confidence 778888999999999888777765 3222334 5555
No 24
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=90.10 E-value=1 Score=36.28 Aligned_cols=76 Identities=20% Similarity=0.160 Sum_probs=55.9
Q ss_pred CCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHH
Q 013725 299 TGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEW 378 (437)
Q Consensus 299 ~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~ 378 (437)
.|..+.|.++|.+|++.|.+..++++.|.. .+.+..
T Consensus 19 agkl~~G~~~v~kai~~gka~lViiA~D~~--------------------------------------------~~~~~~ 54 (110)
T 3cpq_A 19 TGKVILGSKRTIKFVKHGEGKLVVLAGNIP--------------------------------------------KDLEED 54 (110)
T ss_dssp HSEEEESHHHHHHHHHTTCCSEEEECTTCB--------------------------------------------HHHHHH
T ss_pred cCCeeeCHHHHHHHHHcCCceEEEEeCCCC--------------------------------------------HHHHHH
Confidence 488999999999999999999999987653 112356
Q ss_pred HHHHHHhcCCeEEEe-CCCCchhhhhhcccc-cEEEEeeccc
Q 013725 379 FANEYKQFGCTLEFV-TNKSQEGSQFCRGFG-GIGGILRYQL 418 (437)
Q Consensus 379 l~~~a~~~ga~V~vv-s~~~e~G~q~l~~~G-GIaAiLRy~~ 418 (437)
|...+..++..+.++ .+..+-|..+=+.+. .++||+-...
T Consensus 55 l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~~~s~vaI~d~g~ 96 (110)
T 3cpq_A 55 VKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGL 96 (110)
T ss_dssp HHHHHHHTTCCEEECCSCHHHHHHHTTCSSCCSEEEEEECTT
T ss_pred HHHHHHHcCCCEEEEcCCHHHHHHHhCCccceEEEEEecCCH
Confidence 677788899998887 777777776333334 2577776543
No 25
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=89.87 E-value=1.2 Score=37.43 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=48.8
Q ss_pred CCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHH
Q 013725 299 TGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEW 378 (437)
Q Consensus 299 ~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~ 378 (437)
.|..+.|..+|.+|++.|.+..++|+.|.... +++..
T Consensus 30 ~gkl~~G~~~v~kai~~gkakLViiA~D~~p~-------------------------------------------~~~~~ 66 (134)
T 2ale_A 30 LRQLKKGANEATKTLNRGISEFIIMAADCEPI-------------------------------------------EILLH 66 (134)
T ss_dssp TTCEEESHHHHHHHHHHTCEEEEEEETTCSSG-------------------------------------------GGGTH
T ss_pred cCCcccCchHHHHHHHhCCCeEEEEeCCCCHH-------------------------------------------HHHHH
Confidence 47899999999999999999999998776410 01235
Q ss_pred HHHHHHhcCCeEEEeCCCCchhhh
Q 013725 379 FANEYKQFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 379 l~~~a~~~ga~V~vvs~~~e~G~q 402 (437)
|...+..+|.-+.++.+..+-|..
T Consensus 67 l~~lc~~~~VP~~~v~sk~eLG~a 90 (134)
T 2ale_A 67 LPLLCEDKNVPYVFVPSRVALGRA 90 (134)
T ss_dssp HHHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCHHHHHHH
Confidence 668888999999999888777765
No 26
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=89.77 E-value=1.3 Score=36.69 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=53.2
Q ss_pred HHHHHHHhccCCCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchh
Q 013725 288 IGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAEL 367 (437)
Q Consensus 288 l~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~ 367 (437)
|.+++.... ..|..+.|..+|.+|++.|.+..++|..|.. |
T Consensus 12 l~~~L~~A~-~~gkl~~G~~~v~Kai~~gka~LViiA~D~~--------p------------------------------ 52 (126)
T 2xzm_U 12 LAKVIKSSN-CQDAISKGLHEVLRTIEAKQALFVCVAEDCD--------Q------------------------------ 52 (126)
T ss_dssp HHHHHTTTT-SSSCEEESHHHHHHHHHHTCCSEEEEESSCC--------S------------------------------
T ss_pred HHHHHHHHH-HcCCEeecHHHHHHHHHcCCceEEEEeCCCC--------h------------------------------
Confidence 334443333 3478999999999999999999999987653 1
Q ss_pred hhhhhccHHHHHHHHHHhcCCeEEEeCCCCchhhh
Q 013725 368 EVQEKTSLLEWFANEYKQFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 368 ~~~~~~~~v~~l~~~a~~~ga~V~vvs~~~e~G~q 402 (437)
.+++..+...+..++..+.++++..+-|..
T Consensus 53 -----~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a 82 (126)
T 2xzm_U 53 -----GNYVKLVKALCAKNEIKYVSVPKRASLGEY 82 (126)
T ss_dssp -----TTHHHHHHHHHHHTTCCEEEESCSHHHHHH
T ss_pred -----HHHHHHHHHHHHHhCCCEEEECCHHHHHHH
Confidence 112356778899999999999988777764
No 27
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=89.32 E-value=1.7 Score=34.68 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=47.9
Q ss_pred cCCCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHH
Q 013725 297 QDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLL 376 (437)
Q Consensus 297 ~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v 376 (437)
...|..+.|.++|.+|++.|.+..+++..|... +..
T Consensus 18 ~kagk~v~G~~~v~kai~~gkaklVilA~D~~~--------------------------------------------~~~ 53 (105)
T 3u5e_c 18 IKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPV--------------------------------------------LRK 53 (105)
T ss_dssp HTTSEEEESHHHHHHHHHTTCCSEEEECTTSCH--------------------------------------------HHH
T ss_pred HHhCCeeECHHHHHHHHHcCCceEEEEeCCCCH--------------------------------------------HHH
Confidence 345899999999999999999999999876530 112
Q ss_pred HHHHHHHHhcCCeEE-EeCCCCchhhh
Q 013725 377 EWFANEYKQFGCTLE-FVTNKSQEGSQ 402 (437)
Q Consensus 377 ~~l~~~a~~~ga~V~-vvs~~~e~G~q 402 (437)
..+...+...+..+. ++.+..+-|..
T Consensus 54 ~~i~~~c~~~~ip~~~~~~s~~eLG~A 80 (105)
T 3u5e_c 54 SELEYYAMLSKTKVYYFQGGNNELGTA 80 (105)
T ss_dssp HHHHHHHHHHTCEEEECSSCHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeCCCHHHHHHH
Confidence 455677778888888 57777777766
No 28
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=88.29 E-value=1.1 Score=36.96 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=52.6
Q ss_pred CcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHH
Q 013725 300 GKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWF 379 (437)
Q Consensus 300 g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l 379 (437)
|..+.|.++|.+|++.|.+..++++.|..... ++..|
T Consensus 27 gkl~~G~~~v~kal~~gka~lViiA~D~~~~~-------------------------------------------~~~~l 63 (124)
T 2fc3_A 27 GRIKKGTNETTKAVERGLAKLVVIAEDVDPPE-------------------------------------------IVMHL 63 (124)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEEETTCSSGG-------------------------------------------GTTTH
T ss_pred CCccCCHHHHHHHHHcCCceEEEEcCCCChHH-------------------------------------------HHHHH
Confidence 78999999999999999999999988764110 01244
Q ss_pred HHHHHhcCCeEEEeCCCCchhhhhhccc-ccEEEEeecc
Q 013725 380 ANEYKQFGCTLEFVTNKSQEGSQFCRGF-GGIGGILRYQ 417 (437)
Q Consensus 380 ~~~a~~~ga~V~vvs~~~e~G~q~l~~~-GGIaAiLRy~ 417 (437)
...+...+..+.++.+..+-|..+=+.+ =.++||+-+.
T Consensus 64 ~~lc~~~~Vp~~~v~sk~eLG~a~G~~~~~~~vaI~d~g 102 (124)
T 2fc3_A 64 PLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEPG 102 (124)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEEECG
T ss_pred HHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEECcc
Confidence 5667778888888888777776522221 2456666543
No 29
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=86.14 E-value=2.3 Score=34.77 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=45.8
Q ss_pred CCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHH
Q 013725 299 TGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEW 378 (437)
Q Consensus 299 ~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~ 378 (437)
.|..+.|.++|.+|++.|.+..++++.|..... ++..
T Consensus 27 ag~l~~G~~~v~kal~~gka~lViiA~D~~~~~-------------------------------------------~~~~ 63 (120)
T 1vq8_F 27 TGAVKKGTNETTKSIERGSAELVFVAEDVQPEE-------------------------------------------IVMH 63 (120)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEESCCSSGG-------------------------------------------GTTT
T ss_pred cCCEeECHHHHHHHHHcCCceEEEEeCCCChHH-------------------------------------------HHHH
Confidence 478999999999999999999999987764110 0124
Q ss_pred HHHHHHhcCCeEEEeCCCCchhhh
Q 013725 379 FANEYKQFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 379 l~~~a~~~ga~V~vvs~~~e~G~q 402 (437)
|...+..++.-+.++.+..+-|..
T Consensus 64 l~~lc~~~~Vp~~~~~sk~eLG~a 87 (120)
T 1vq8_F 64 IPELADEKGVPFIFVEQQDDLGHA 87 (120)
T ss_dssp HHHHHHTTCCCEEEESCHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCHHHHHHH
Confidence 456677788888888877777765
No 30
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=84.98 E-value=0.55 Score=41.15 Aligned_cols=60 Identities=10% Similarity=-0.109 Sum_probs=33.4
Q ss_pred HHHHHHhccCCCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccch
Q 013725 289 GKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAE 366 (437)
Q Consensus 289 ~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~ 366 (437)
.++|..+++....-.--++..++.++.|.+- + ....|+|++||+... +. ....||.||.+
T Consensus 103 a~~f~~i~~~E~~H~~~~~~~l~~l~~~~~~-----~----~~~~~~C~~CG~i~~----~~-----~p~~CP~Cg~~ 162 (170)
T 3pwf_A 103 VRTTHYALEAEKIHAELYRKAKEKAEKGEDI-----E----IKKVYICPICGYTAV----DE-----APEYCPVCGAP 162 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC-----C----CSCEEECTTTCCEEE----SC-----CCSBCTTTCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC-----C----CCCeeEeCCCCCeeC----CC-----CCCCCCCCCCC
Confidence 3444444433333334455566666667652 1 124589999998432 11 12489999965
No 31
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=84.73 E-value=2.5 Score=34.46 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=52.4
Q ss_pred CcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHH
Q 013725 300 GKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWF 379 (437)
Q Consensus 300 g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l 379 (437)
|..+.|.++|.+|++.|.+..++++.|..... ++..|
T Consensus 26 g~l~~G~~~v~kal~~gka~lViiA~D~~~~~-------------------------------------------~~~~l 62 (119)
T 1rlg_A 26 GKVKKGTNETTKAVERGLAKLVYIAEDVDPPE-------------------------------------------IVAHL 62 (119)
T ss_dssp SEEEESHHHHHHHHTTTCCSEEEEESCCSCST-------------------------------------------TTTHH
T ss_pred CCeeECHHHHHHHHHcCCCcEEEEeCCCChHH-------------------------------------------HHHHH
Confidence 78999999999999999999999987764100 01355
Q ss_pred HHHHHhcCCeEEEeCCCCchhhhhhccc-ccEEEEeec
Q 013725 380 ANEYKQFGCTLEFVTNKSQEGSQFCRGF-GGIGGILRY 416 (437)
Q Consensus 380 ~~~a~~~ga~V~vvs~~~e~G~q~l~~~-GGIaAiLRy 416 (437)
...+...|..+.++.+..+-|..+=+.+ =.++||+-+
T Consensus 63 ~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~vaI~d~ 100 (119)
T 1rlg_A 63 PLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAIINE 100 (119)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEEC
T ss_pred HHHHHHcCCCEEEeCCHHHHHHHhCCCCCeEEEEEecC
Confidence 5677788888888888777776522221 234566654
No 32
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=81.57 E-value=0.91 Score=38.60 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=27.5
Q ss_pred CCcEEEcHHHHHHHHHhCCccEEEeccCcc
Q 013725 299 TGKYVFGVDDTLKALELGAVEILIVWENLD 328 (437)
Q Consensus 299 ~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~ 328 (437)
.|..+.|..+|.+|++.|.+..++|+.|..
T Consensus 48 agkl~~G~kev~KaI~~gkakLVIIA~D~~ 77 (144)
T 2jnb_A 48 YKQLRKGANEATKTLNRGISEFIVMAADAE 77 (144)
T ss_dssp TTCCCBCHHHHHHHHHHTCEEEEEEETTCS
T ss_pred cCCccccHHHHHHHHHhCCCeEEEEeCCCC
Confidence 478999999999999999999999988765
No 33
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=80.17 E-value=6 Score=32.58 Aligned_cols=30 Identities=37% Similarity=0.654 Sum_probs=27.3
Q ss_pred CCcEEEcHHHHHHHHHhCCccEEEeccCcc
Q 013725 299 TGKYVFGVDDTLKALELGAVEILIVWENLD 328 (437)
Q Consensus 299 ~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~ 328 (437)
.|+.+.|.++|.+|++.|.+..+|+..|..
T Consensus 25 aGklv~G~~~v~kaIr~gkakLVIiA~Das 54 (125)
T 3vi6_A 25 SGKYVLGYKQTLKMIRQGKAKLVILANNCP 54 (125)
T ss_dssp HSEEEESHHHHHHHHHTTCCSEEEECTTSC
T ss_pred hCCeeeCHHHHHHHHHcCCceEEEEeCCCC
Confidence 488999999999999999999999987654
No 34
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=72.14 E-value=4.4 Score=34.27 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=45.6
Q ss_pred CcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHH
Q 013725 300 GKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWF 379 (437)
Q Consensus 300 g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l 379 (437)
|..+-|..++.+|++.|.+..+++.+|.. + .+++..+
T Consensus 39 g~l~~G~~et~Kal~kg~a~LvvLA~D~~------------~-------------------------------~~i~k~i 75 (143)
T 3u5c_M 39 DGLARGLRESTKALTRGEALLVVLVSSVT------------E-------------------------------ANIIKLV 75 (143)
T ss_dssp TCEEESHHHHHHHHSSTTCSCEECCSCCS------------T-------------------------------THHHHHH
T ss_pred CCEeEcHHHHHHHHhcCceeEEEEeCCCC------------H-------------------------------HHHHHHH
Confidence 67999999999999999999999987643 0 1123455
Q ss_pred HHHHH--hcCCeEEEeCCCCchhhh
Q 013725 380 ANEYK--QFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 380 ~~~a~--~~ga~V~vvs~~~e~G~q 402 (437)
...+. .++..+.+|++..+.|+.
T Consensus 76 ~~lC~~~e~~IP~i~V~s~keLG~a 100 (143)
T 3u5c_M 76 EGLANDPENKVPLIKVADAKQLGEW 100 (143)
T ss_dssp HHHHHCSSSCCCCCCCSCHHHHHHH
T ss_pred HHHHhhhhhCCCEEEECCHHHHhHH
Confidence 67788 888888888876665553
No 35
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=69.68 E-value=3.2 Score=36.87 Aligned_cols=46 Identities=13% Similarity=-0.000 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccch
Q 013725 306 VDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAE 366 (437)
Q Consensus 306 ~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~ 366 (437)
....++.++.|.+=.- +. -..|+|+.||+... .. .....||.||.+
T Consensus 135 ~~~~l~~l~~~~~~~~---~~----~~~~~C~~CG~~~~----g~----~~p~~CP~C~~~ 180 (191)
T 1lko_A 135 FLDFARNIKEGRVFLR---EQ----ATKWRCRNCGYVHE----GT----GAPELCPACAHP 180 (191)
T ss_dssp HHHHHHHHHHTCSSEE---EE----EEEEEETTTCCEEE----EE----ECCSBCTTTCCB
T ss_pred HHHHHHhhhccccccc---CC----CceEEECCCCCEee----CC----CCCCCCCCCcCC
Confidence 4555666777765321 11 12479999997421 00 112389999976
No 36
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=68.66 E-value=9.9 Score=30.70 Aligned_cols=63 Identities=14% Similarity=0.334 Sum_probs=49.7
Q ss_pred cCCCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHH
Q 013725 297 QDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLL 376 (437)
Q Consensus 297 ~~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v 376 (437)
+.+.....|..+|..|++.|.+..++|..|.. | ..++
T Consensus 21 ~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~--------p-----------------------------------~~i~ 57 (113)
T 3jyw_G 21 PKPYAVKYGLNHVVALIENKKAKLVLIANDVD--------P-----------------------------------IELV 57 (113)
T ss_dssp SSSSCEEESHHHHHHTTTTTCCSEEEECSCCS--------S-----------------------------------HHHH
T ss_pred CCCchhhchHHHHHHHHHcCCceEEEEeCCCC--------H-----------------------------------HHHH
Confidence 34456789999999999999999999987654 1 0113
Q ss_pred HHHHHHHHhcCCeEEEeCCCCchhhh
Q 013725 377 EWFANEYKQFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 377 ~~l~~~a~~~ga~V~vvs~~~e~G~q 402 (437)
..|...+..+|.-+.++++..+-|..
T Consensus 58 ~~l~~lC~~~~VP~~~v~sk~~LG~a 83 (113)
T 3jyw_G 58 VFLPALCKKMGVPYAIVKGKARLGTL 83 (113)
T ss_dssp TTHHHHHHHTTCCCEECSCSTTTHHH
T ss_pred HHHHHHHHHcCCCEEEECCHHHHHHH
Confidence 45678889999999999998887765
No 37
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=67.42 E-value=2.1 Score=38.44 Aligned_cols=25 Identities=8% Similarity=-0.183 Sum_probs=17.4
Q ss_pred eeecCCCCceEEEecccccccccCCccCccccch
Q 013725 333 VLKNSATGEIVIKHLNRDQEADQSNFRDAATSAE 366 (437)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~ 366 (437)
.|+|+.||+... . .....||.||..
T Consensus 171 ~~~C~~CG~i~~----g-----~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHK----G-----EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEE----S-----SCCSBCTTTCCB
T ss_pred EEEECCCCCEEc----C-----cCCCCCCCCCCC
Confidence 589999998421 1 113689999976
No 38
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=66.40 E-value=11 Score=34.83 Aligned_cols=71 Identities=10% Similarity=0.143 Sum_probs=49.5
Q ss_pred cEEEcHHHHHHHHHhC--CccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHH
Q 013725 301 KYVFGVDDTLKALELG--AVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEW 378 (437)
Q Consensus 301 ~a~yG~~eV~~Al~~G--aV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~ 378 (437)
..+||...|.+||+.| .+++|+++++... . . ...
T Consensus 13 ~~veG~~~V~eal~~~~~~i~~l~~~~~~~~-------~----------------------------~---------~~~ 48 (253)
T 1gz0_A 13 EMIYGIHAVQALLERAPERFQEVFILKGRED-------K----------------------------R---------LLP 48 (253)
T ss_dssp EEEESHHHHHHHHHSCGGGEEEEEEESSCCC-------T----------------------------T---------THH
T ss_pred EEEEEHHHHHHHHhcCCCCeEEEEEECCccc-------h----------------------------h---------HHH
Confidence 4789999999999998 5899999876430 0 0 135
Q ss_pred HHHHHHhcCCeEEEeCCCCchhhhh--hcccccEEEEeecc
Q 013725 379 FANEYKQFGCTLEFVTNKSQEGSQF--CRGFGGIGGILRYQ 417 (437)
Q Consensus 379 l~~~a~~~ga~V~vvs~~~e~G~q~--l~~~GGIaAiLRy~ 417 (437)
+++.+...|..+..++..-- .++ .....||.|+.+-+
T Consensus 49 l~~~~~~~~i~v~~v~~~~l--~~ls~~~~~qGv~a~~~~~ 87 (253)
T 1gz0_A 49 LIHALESQGVVIQLANRQYL--DEKSDGAVHQGIIARVKPG 87 (253)
T ss_dssp HHHHHHHHTCEEEEECSHHH--HHTTTSCCCTTEEEEECCC
T ss_pred HHHHHHHCCCcEEEeCHHHH--HHHhCCCCCcEEEEEEecc
Confidence 56777778999999986321 121 13468999998743
No 39
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=60.33 E-value=13 Score=31.19 Aligned_cols=19 Identities=16% Similarity=-0.081 Sum_probs=12.4
Q ss_pred EEEeccCccccceeeecCCCCce
Q 013725 320 ILIVWENLDINRYVLKNSATGEI 342 (437)
Q Consensus 320 tLlV~d~l~~~~~~~~~~~~~~~ 342 (437)
.|.|.+.. ..|+|.+||+.
T Consensus 61 ~L~i~~~p----~~~~C~~CG~~ 79 (139)
T 3a43_A 61 EIEFVEEE----AVFKCRNCNYE 79 (139)
T ss_dssp EEEEEEEC----CEEEETTTCCE
T ss_pred EEEEEecC----CcEECCCCCCE
Confidence 55554433 24799999974
No 40
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=60.24 E-value=11 Score=35.08 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=46.6
Q ss_pred CCCcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHH
Q 013725 298 DTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLE 377 (437)
Q Consensus 298 ~~g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~ 377 (437)
.++..+.|..+|..|++.|.+..+||+.|..... ++.
T Consensus 132 ~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~e-------------------------------------------i~~ 168 (266)
T 2zkr_f 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIE-------------------------------------------LVV 168 (266)
T ss_dssp SCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSST-------------------------------------------TTT
T ss_pred CCCeeeeChHHHHHHHHhCCceEEEEecCCCHHH-------------------------------------------HHH
Confidence 4567889999999999999999999988764110 012
Q ss_pred HHHHHHHhcCCeEEEeCCCCchhhh
Q 013725 378 WFANEYKQFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 378 ~l~~~a~~~ga~V~vvs~~~e~G~q 402 (437)
.|...|..+|.-+.+|.+..+-|..
T Consensus 169 ~Lp~LC~~~~VPyi~v~sk~eLG~A 193 (266)
T 2zkr_f 169 FLPALCRKMGVPYCIIKGKARLGHL 193 (266)
T ss_dssp HHHHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCHHHHHHH
Confidence 4557777888888888877766654
No 41
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=59.45 E-value=14 Score=34.75 Aligned_cols=69 Identities=9% Similarity=0.058 Sum_probs=46.5
Q ss_pred cEEEcHHHHHHHHHhC-CccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHH
Q 013725 301 KYVFGVDDTLKALELG-AVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWF 379 (437)
Q Consensus 301 ~a~yG~~eV~~Al~~G-aV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l 379 (437)
-.+||...|.+||+.| .+..|+++++.. . . ..+
T Consensus 35 flveG~~~V~eaL~~~~~i~~l~~~~~~~--------~----------------------------~----------~~l 68 (277)
T 3nk6_A 35 TLIEDTEPLMECIRAGVQFIEVYGSSGTP--------L----------------------------D----------PAL 68 (277)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEETTSC--------C----------------------------C----------HHH
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEeCCcc--------C----------------------------c----------HHH
Confidence 3689999999999998 678888876543 0 0 245
Q ss_pred HHHHHhcCCeEEEeCCCCchhhhh--hcccccEEEEeecc
Q 013725 380 ANEYKQFGCTLEFVTNKSQEGSQF--CRGFGGIGGILRYQ 417 (437)
Q Consensus 380 ~~~a~~~ga~V~vvs~~~e~G~q~--l~~~GGIaAiLRy~ 417 (437)
++.+...|..+..++...- .++ .....||.|+.+.+
T Consensus 69 ~~~~~~~~~~v~~v~~~~l--~~ls~~~~~qGv~a~~~~~ 106 (277)
T 3nk6_A 69 LDLCRQREIPVRLIDVSIV--NQLFKAERKAKVFGIARVP 106 (277)
T ss_dssp HHHHHHTTCCEEEECHHHH--TTCC-----CCEEEEEECC
T ss_pred HHHHHhcCCcEEEECHHHH--HHhhCCCCCCeEEEEEecC
Confidence 6677778899998875321 110 13467999998865
No 42
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=52.40 E-value=6.7 Score=31.84 Aligned_cols=26 Identities=4% Similarity=0.049 Sum_probs=17.4
Q ss_pred eeecCCCCceEEEecccccccccCCc-cCccccch
Q 013725 333 VLKNSATGEIVIKHLNRDQEADQSNF-RDAATSAE 366 (437)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~cp~~~~~ 366 (437)
.|+|.+||+... + ..... .||.||..
T Consensus 73 ~~~C~~CG~~~e--~------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFK--P------NALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEEC--S------CCSTTCCCSSSSSC
T ss_pred eEEcCCCCCEEe--C------CCCCCCcCccccCC
Confidence 369999997321 1 12245 79999977
No 43
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=50.52 E-value=16 Score=34.27 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=22.9
Q ss_pred cEEEcHHHHHHHHHhC-CccEEEeccCc
Q 013725 301 KYVFGVDDTLKALELG-AVEILIVWENL 327 (437)
Q Consensus 301 ~a~yG~~eV~~Al~~G-aV~tLlV~d~l 327 (437)
-.+||...|.+|++.| .++.|+++++.
T Consensus 29 f~veG~~~v~eal~~~~~i~~l~~~~~~ 56 (274)
T 1ipa_A 29 FLIEGAREIERALQAGIELEQALVWEGG 56 (274)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEETTC
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEEcCc
Confidence 4689999999999988 58889887754
No 44
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=50.14 E-value=29 Score=32.04 Aligned_cols=59 Identities=15% Similarity=0.347 Sum_probs=46.0
Q ss_pred cEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHHH
Q 013725 301 KYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWFA 380 (437)
Q Consensus 301 ~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l~ 380 (437)
...+|..+|..|++.|.+..++|..|.... .++..|.
T Consensus 131 ~lk~G~keV~KaIekgKAkLVVIA~DadP~-------------------------------------------eivk~Lp 167 (256)
T 3izc_H 131 AVKYGLNHVVALIENKKAKLVLIANDVDPI-------------------------------------------ELVVFLP 167 (256)
T ss_dssp CEEESHHHHHHHHHHTCCSEEEEESCCSSG-------------------------------------------GGTTHHH
T ss_pred hhhccHHHHHHHHHhCcceEEEEeCCCChH-------------------------------------------HHHHHHH
Confidence 357899999999999999999998776410 0013456
Q ss_pred HHHHhcCCeEEEeCCCCchhhh
Q 013725 381 NEYKQFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 381 ~~a~~~ga~V~vvs~~~e~G~q 402 (437)
..+..+|.-+.++.+..+-|..
T Consensus 168 aLC~k~gVPy~~V~sK~eLG~A 189 (256)
T 3izc_H 168 ALCKKMGVPYAIVKGKARLGTL 189 (256)
T ss_dssp HHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHhcCCCEEEECCHHHHHHH
Confidence 8888999999999988777764
No 45
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=45.23 E-value=9.2 Score=32.76 Aligned_cols=59 Identities=3% Similarity=-0.078 Sum_probs=33.2
Q ss_pred cEEEcHHHHHHHHHhCCccEEEeccCcccc-ceeeecCCCCceEEEecccccccccCCccCccccchh
Q 013725 301 KYVFGVDDTLKALELGAVEILIVWENLDIN-RYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAEL 367 (437)
Q Consensus 301 ~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~ 367 (437)
..+.+-....+.++.-.|..+=+.+-+... .|.++|..||..-. .. .....||.||.++
T Consensus 99 ~lvT~D~~l~~vA~~~Gv~v~~~~~~i~~~~~~~y~C~~Cg~~~~---~~-----~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 99 EIFSDDYNVQNIASLLGLRFRTLKRGIKKVIKWRYVCIGCGRKFS---TL-----PPGGVCPDCGSKV 158 (165)
T ss_dssp CEECCCHHHHHHHHHTTCCEECCSCCCSSCCCCCEEESSSCCEES---SC-----CGGGBCTTTCCBE
T ss_pred eEEcCcHHHHHHHHHCCCeEEchhhhccccccEEEECCCCCCccc---CC-----CCCCcCCCCCCcc
Confidence 344444455666665566666555333222 35679999996211 00 1134799999874
No 46
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=44.20 E-value=14 Score=31.18 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccch
Q 013725 307 DDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAE 366 (437)
Q Consensus 307 ~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~ 366 (437)
..=++||+.|. |++. +|++||.... +....||.|+..
T Consensus 34 ~~F~~~l~~gr---L~~~----------rC~~CG~~~~----------PPr~~Cp~C~s~ 70 (145)
T 3irb_A 34 EQFFNGLKQNK---IIGS----------KCSKCGRIFV----------PARSYCEHCFVK 70 (145)
T ss_dssp HHHHHHHHTTC---CEEE----------ECTTTCCEEE----------SCCSEETTTTEE
T ss_pred HHHHHHHHcCe---EEEE----------EeCCCCcEEc----------CchhhCcCCCCC
Confidence 56678888885 4442 8999997332 234569999976
No 47
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=44.02 E-value=15 Score=24.54 Aligned_cols=29 Identities=3% Similarity=-0.041 Sum_probs=17.7
Q ss_pred eecCCCCceEEEecccccc------cccCCccCccccch
Q 013725 334 LKNSATGEIVIKHLNRDQE------ADQSNFRDAATSAE 366 (437)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~------~~~~~~~cp~~~~~ 366 (437)
|+|..||+. + .++.. ..+....||.||..
T Consensus 5 y~C~vCGyv---y-d~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYE---Y-DPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCE---E-CGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeE---E-eCCcCCCcchhhCCCCCcCcCCCCc
Confidence 689999972 2 22111 11345689999965
No 48
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=39.21 E-value=63 Score=27.78 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=46.0
Q ss_pred CcEEEcHHHHHHHH--HhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHH
Q 013725 300 GKYVFGVDDTLKAL--ELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLE 377 (437)
Q Consensus 300 g~a~yG~~eV~~Al--~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~ 377 (437)
+..+-|..++.+|| +.|.+...++..|-..+.++ -+++. .-
T Consensus 34 ~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i--------------------------------~~hi~-----~~ 76 (165)
T 2kg4_A 34 RTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDV--------------------------------ALQIH-----FT 76 (165)
T ss_dssp TCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCH--------------------------------HHHHH-----HH
T ss_pred CCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchh--------------------------------hhhcc-----HH
Confidence 56889999999999 99999999998765411100 00000 11
Q ss_pred HHHHHHHhcCCeEEEeCCCCchhhh
Q 013725 378 WFANEYKQFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 378 ~l~~~a~~~ga~V~vvs~~~e~G~q 402 (437)
.+...+.+.|..+..|++...-|+.
T Consensus 77 li~alC~E~~Ip~i~V~s~k~LG~a 101 (165)
T 2kg4_A 77 LIQAFCCENDINILRVSNPGRLAEL 101 (165)
T ss_dssp HHHHHHHHTTCCEEEESCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCHHHHHHH
Confidence 3457788999999999987666654
No 49
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=38.28 E-value=17 Score=27.53 Aligned_cols=30 Identities=7% Similarity=0.011 Sum_probs=18.4
Q ss_pred eeecCCCCceEEEecccccc-------------cccCCccCccccch
Q 013725 333 VLKNSATGEIVIKHLNRDQE-------------ADQSNFRDAATSAE 366 (437)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~cp~~~~~ 366 (437)
.|+|..||+. | .++.. .-+....||.||..
T Consensus 27 ~y~C~vCGyv---Y-D~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFE---Y-DEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCE---E-ETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCCEE---E-cCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 5799999972 2 22110 01345689999965
No 50
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=36.92 E-value=18 Score=30.43 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccch
Q 013725 307 DDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAE 366 (437)
Q Consensus 307 ~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~ 366 (437)
..-++|++.|+ |++. +|++||.... +....||.|+..
T Consensus 34 ~~fw~~l~~g~---L~~~----------rC~~CG~~~f----------PPr~~Cp~C~s~ 70 (145)
T 2gnr_A 34 EQFFNGLKQNK---IIGS----------KCSKCGRIFV----------PARSYCEHCFVK 70 (145)
T ss_dssp HHHHHHHHTTC---CEEE----------ECTTTCCEEE----------SCCSEETTTTEE
T ss_pred HHHHhhhhCCE---EEEE----------EECCCCcEEe----------CCCCCCCCCCCC
Confidence 34567777773 3432 8999997332 234579999876
No 51
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.78 E-value=39 Score=26.78 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=21.6
Q ss_pred cEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchh
Q 013725 319 EILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAEL 367 (437)
Q Consensus 319 ~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~ 367 (437)
..|+|.+ .+|.+||+. +..+ -.....||.|+.+.
T Consensus 61 ~~L~v~p--------~~C~~CG~~---F~~~----~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 61 MVLLIKP--------AQCRKCGFV---FKAE----INIPSRCPKCKSEW 94 (105)
T ss_dssp EEEEECC--------CBBTTTCCB---CCCC----SSCCSSCSSSCCCC
T ss_pred cEEEEEC--------cChhhCcCe---eccc----CCCCCCCcCCCCCc
Confidence 3676643 389999973 2111 12357899999873
No 52
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=35.37 E-value=82 Score=28.98 Aligned_cols=59 Identities=14% Similarity=0.320 Sum_probs=45.8
Q ss_pred cEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHHH
Q 013725 301 KYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWFA 380 (437)
Q Consensus 301 ~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l~ 380 (437)
....|+.+|..+++.|....++|..|.. | .+++..|-
T Consensus 124 ~lk~GvneVtKaIekgKAqLVVIA~Dvd--------P-----------------------------------ielv~~LP 160 (255)
T 4a17_F 124 VLKYGLNHITTLIENKQAKLVVIAHDVD--------P-----------------------------------IELVIFLP 160 (255)
T ss_dssp CEEECHHHHHHHHHTSCCSEEEEESCCS--------S-----------------------------------THHHHHHH
T ss_pred eeecchHHHHHHHHcCCceEEEEeCCCC--------h-----------------------------------HHHHHHHH
Confidence 4678999999999999999999987764 1 11234666
Q ss_pred HHHHhcCCeEEEeCCCCchhhh
Q 013725 381 NEYKQFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 381 ~~a~~~ga~V~vvs~~~e~G~q 402 (437)
..+..+|.-..+|.+..+-|..
T Consensus 161 aLCee~~VPY~~V~sK~~LG~a 182 (255)
T 4a17_F 161 QLCRKNDVPFAFVKGKAALGKL 182 (255)
T ss_dssp HHHHHTTCCEEEESCHHHHHHH
T ss_pred HHHHHcCCCEEEECCHHHHHHH
Confidence 7888889999998887766654
No 53
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=35.18 E-value=9.1 Score=34.12 Aligned_cols=124 Identities=21% Similarity=0.260 Sum_probs=60.0
Q ss_pred EEEEecChhcHHHhhhccCCChhhhcceeEEEeCCCCCcccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhc
Q 013725 224 GLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSA-------EILSNVKFIQEKRLIGKYFEEIS 296 (437)
Q Consensus 224 ~lilaGp~~~k~~f~~~~~l~~~l~~~vi~~v~~s~~~~~gl~E~l~~~~-------~~l~~~~~~~e~~ll~~f~~~~~ 296 (437)
.+++|+||-=|....+ .|.++. +..++|.|+ =+++.++... +.+..=+..-..-+++-+.+.+.
T Consensus 3 Iil~GpPGsGKgTqa~------~La~~~-g~~~istGd--llR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~ 73 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK------RLAKEK-GFVHISTGD--ILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFP 73 (206)
T ss_dssp EEEECSTTSSHHHHHH------HHHHHH-CCEEEEHHH--HHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHH------HHHHHH-CCeEEcHHH--HHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhc
Confidence 4677777777777663 354544 556776643 2455444311 11111111122223444445556
Q ss_pred cCCCcEEEcHHHHHH-H------HH-hC-CccE---EEeccCcccccee--eecCCCCceEEEecccccccccCCccCcc
Q 013725 297 QDTGKYVFGVDDTLK-A------LE-LG-AVEI---LIVWENLDINRYV--LKNSATGEIVIKHLNRDQEADQSNFRDAA 362 (437)
Q Consensus 297 ~~~g~a~yG~~eV~~-A------l~-~G-aV~t---LlV~d~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~cp~ 362 (437)
+..+-..-|...+.. | +. .| .++. |-|+++....|.. +.|+.||..-. ....||.
T Consensus 74 ~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~-----------~~~~pp~ 142 (206)
T 3sr0_A 74 KHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYH-----------VKYNPPP 142 (206)
T ss_dssp SSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEE-----------TTTBCCC
T ss_pred cCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceee-----------eeccCCC
Confidence 555656667533322 1 12 22 2333 3345554443432 25888886321 2356777
Q ss_pred ccchh
Q 013725 363 TSAEL 367 (437)
Q Consensus 363 ~~~~~ 367 (437)
||.++
T Consensus 143 ~g~~l 147 (206)
T 3sr0_A 143 PGVKV 147 (206)
T ss_dssp TTCCC
T ss_pred CCcee
Confidence 87653
No 54
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=35.16 E-value=63 Score=29.71 Aligned_cols=74 Identities=12% Similarity=0.277 Sum_probs=52.4
Q ss_pred cEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHHH
Q 013725 301 KYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWFA 380 (437)
Q Consensus 301 ~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l~ 380 (437)
...+|+.+|..+++.|....++|..|.+ | .+++-.|-
T Consensus 127 ~lk~GvneVTklVE~kKAqLVVIA~DVd--------P-----------------------------------iElV~fLP 163 (258)
T 3iz5_H 127 VVKYGLNHVTYLIEQSKAQLVVIAHDVD--------P-----------------------------------IELVVWLP 163 (258)
T ss_dssp CEEESHHHHHHHHHTTCEEEEEEESCCS--------S-----------------------------------THHHHHHH
T ss_pred eeecccHHHHHHHHcCcceEEEEeCCCC--------h-----------------------------------HHHHhHHH
Confidence 4679999999999999999999987664 1 23356778
Q ss_pred HHHHhcCCeEEEeCCCCchhhhhhcccccEEEEeecc
Q 013725 381 NEYKQFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQ 417 (437)
Q Consensus 381 ~~a~~~ga~V~vvs~~~e~G~q~l~~~GGIaAiLRy~ 417 (437)
.++..+|.-..+|++...-|...=..---.+||--+.
T Consensus 164 aLC~k~gVPY~iVk~KarLG~~vgrKtct~Va~t~v~ 200 (258)
T 3iz5_H 164 ALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVK 200 (258)
T ss_dssp HHHTTTTCCEEEESCHHHHHHHTTCSSCCSEEEEESC
T ss_pred HHHHhcCCCeEEECCHHHHHHHhCCccceEEEEEecC
Confidence 8888999999999987766653111112245555443
No 55
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=34.54 E-value=20 Score=26.34 Aligned_cols=28 Identities=4% Similarity=-0.085 Sum_probs=18.4
Q ss_pred eeeecCCCCceEEEecccccccccCCccCccccch
Q 013725 332 YVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAE 366 (437)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~ 366 (437)
+.++|++||..... . ......||.||.+
T Consensus 27 v~Y~C~~CG~~~e~--~-----~~d~irCp~CG~R 54 (70)
T 1twf_L 27 LKYICAECSSKLSL--S-----RTDAVRCKDCGHR 54 (70)
T ss_dssp CCEECSSSCCEECC--C-----TTSTTCCSSSCCC
T ss_pred EEEECCCCCCccee--C-----CCCCccCCCCCce
Confidence 44699999974221 1 1235689999985
No 56
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=33.46 E-value=23 Score=25.89 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=18.2
Q ss_pred eeecCCCCceEEEecccccc-------------cccCCccCccccch
Q 013725 333 VLKNSATGEIVIKHLNRDQE-------------ADQSNFRDAATSAE 366 (437)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~cp~~~~~ 366 (437)
.|+|..||+. + .++.. .-+....||.||..
T Consensus 7 ~y~C~vCGyi---Y-d~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYI---Y-EPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCE---E-CTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEE---E-cCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 3799999972 2 22210 01345689999965
No 57
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=30.99 E-value=23 Score=23.74 Aligned_cols=29 Identities=7% Similarity=-0.040 Sum_probs=15.1
Q ss_pred eecCCCCceEEEecccccccccCCccCccccch
Q 013725 334 LKNSATGEIVIKHLNRDQEADQSNFRDAATSAE 366 (437)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~ 366 (437)
++|-.||.. ++..+...-....||.||=+
T Consensus 4 Y~C~rCg~~----fs~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 4 YRCGKCWKT----FTDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp -CCCCTTTT----CCCCCSCCCSSSCCTTTCCS
T ss_pred EEeeccCCC----ccHHHHhhCCCcccCccCcE
Confidence 477778752 12222111224579999855
No 58
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=29.80 E-value=18 Score=26.68 Aligned_cols=28 Identities=7% Similarity=0.159 Sum_probs=16.8
Q ss_pred eecCCCCceEEEecccccccccCCccCccccchhhh
Q 013725 334 LKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEV 369 (437)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~ 369 (437)
.+|| |+...+. .. .+....|| ||..+.+
T Consensus 5 v~C~-C~~~~~~--~~----~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 5 FRCD-CGRALYS--RE----GAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEET-TSCCEEE--ET----TCSEEEET-TTEEEEC
T ss_pred EECC-CCCEEEE--cC----CCcEEECC-CCCeeee
Confidence 4899 9864321 11 23456799 9977543
No 59
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=29.11 E-value=31 Score=26.44 Aligned_cols=12 Identities=8% Similarity=0.083 Sum_probs=8.9
Q ss_pred cCCccCccccch
Q 013725 355 QSNFRDAATSAE 366 (437)
Q Consensus 355 ~~~~~cp~~~~~ 366 (437)
+....||.||..
T Consensus 66 PddW~CPvCga~ 77 (87)
T 1s24_A 66 PDDWCCPDCGAT 77 (87)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCCCCCCCCC
Confidence 445689999965
No 60
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=28.81 E-value=25 Score=24.98 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=14.6
Q ss_pred ecCCCCceEEEecccccccccCCccCccccchh
Q 013725 335 KNSATGEIVIKHLNRDQEADQSNFRDAATSAEL 367 (437)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~ 367 (437)
+|++|+.-. | ...||.||...
T Consensus 8 ~C~~CgvYT---L---------k~~CP~CG~~T 28 (60)
T 2apo_B 8 KCPKCGLYT---L---------KEICPKCGEKT 28 (60)
T ss_dssp ECTTTCCEE---S---------SSBCSSSCSBC
T ss_pred eCCCCCCEe---c---------cccCcCCCCcC
Confidence 799997521 2 34699999774
No 61
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=25.96 E-value=39 Score=23.13 Aligned_cols=12 Identities=8% Similarity=0.147 Sum_probs=8.7
Q ss_pred cCCccCccccch
Q 013725 355 QSNFRDAATSAE 366 (437)
Q Consensus 355 ~~~~~cp~~~~~ 366 (437)
+....||.||..
T Consensus 34 P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 34 PDDWACPVCGAS 45 (52)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCcCCCCCCc
Confidence 345589999965
No 62
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=25.88 E-value=30 Score=24.56 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=14.3
Q ss_pred ecCCCCceEEEecccccccccCCccCccccchh
Q 013725 335 KNSATGEIVIKHLNRDQEADQSNFRDAATSAEL 367 (437)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~ 367 (437)
+|++||.- +| ...||.||...
T Consensus 7 ~C~~Cg~Y---TL---------k~~CP~CG~~t 27 (60)
T 2aus_D 7 KCPKCGRY---TL---------KETCPVCGEKT 27 (60)
T ss_dssp ECTTTCCE---ES---------SSBCTTTCSBC
T ss_pred ECCCCCCE---Ec---------cccCcCCCCcc
Confidence 79999852 12 34599999774
No 63
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=25.86 E-value=41 Score=23.30 Aligned_cols=12 Identities=0% Similarity=0.022 Sum_probs=8.8
Q ss_pred cCCccCccccch
Q 013725 355 QSNFRDAATSAE 366 (437)
Q Consensus 355 ~~~~~cp~~~~~ 366 (437)
+....||.||..
T Consensus 34 P~dw~CP~Cga~ 45 (55)
T 2v3b_B 34 PADWVCPDCGVG 45 (55)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 345589999965
No 64
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.64 E-value=36 Score=24.36 Aligned_cols=28 Identities=7% Similarity=0.059 Sum_probs=18.3
Q ss_pred eeeecCCCCceEEEecccccccccCCccCccccch
Q 013725 332 YVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAE 366 (437)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~ 366 (437)
+.++|..||.... +. .....+||.||.+
T Consensus 20 v~Y~C~~Cg~~~~--l~-----~~~~iRC~~CG~R 47 (63)
T 3h0g_L 20 MIYLCADCGARNT--IQ-----AKEVIRCRECGHR 47 (63)
T ss_dssp CCCBCSSSCCBCC--CC-----SSSCCCCSSSCCC
T ss_pred eEEECCCCCCeee--cC-----CCCceECCCCCcE
Confidence 3468999986422 11 1235789999977
No 65
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=24.51 E-value=1.4e+02 Score=23.78 Aligned_cols=55 Identities=4% Similarity=0.025 Sum_probs=41.1
Q ss_pred CcEEEcHHHHHHHHHhCCccEEEeccCccccceeeecCCCCceEEEecccccccccCCccCccccchhhhhhhccHHHHH
Q 013725 300 GKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEADQSNFRDAATSAELEVQEKTSLLEWF 379 (437)
Q Consensus 300 g~a~yG~~eV~~Al~~GaV~tLlV~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~v~~l 379 (437)
|.-++|.++..+.++...|+.++|+-... . ......+
T Consensus 48 g~pV~g~~~l~~~~~~~~id~viia~~~~-----------~--------------------------------~~~~~~i 84 (141)
T 3nkl_A 48 GITIYRPKYLERLIKKHCISTVLLAVPSA-----------S--------------------------------QVQKKVI 84 (141)
T ss_dssp TEEEECGGGHHHHHHHHTCCEEEECCTTS-----------C--------------------------------HHHHHHH
T ss_pred CeEEECHHHHHHHHHHCCCCEEEEeCCCC-----------C--------------------------------HHHHHHH
Confidence 56788988888889999999988853221 0 0113578
Q ss_pred HHHHHhcCCeEEEeCCCC
Q 013725 380 ANEYKQFGCTLEFVTNKS 397 (437)
Q Consensus 380 ~~~a~~~ga~V~vvs~~~ 397 (437)
++.+...|.+|.++|+-.
T Consensus 85 ~~~l~~~gv~v~~vP~~~ 102 (141)
T 3nkl_A 85 IESLAKLHVEVLTIPNLD 102 (141)
T ss_dssp HHHHHTTTCEEEECCCHH
T ss_pred HHHHHHcCCeEEECCCHH
Confidence 899999999999999743
No 66
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=22.95 E-value=45 Score=23.59 Aligned_cols=19 Identities=0% Similarity=-0.148 Sum_probs=13.9
Q ss_pred ecCCCCceEEEecccccccccCCccCcccc
Q 013725 335 KNSATGEIVIKHLNRDQEADQSNFRDAATS 364 (437)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~ 364 (437)
.|++||+.. .....||.||
T Consensus 32 ~c~~cGe~~-----------~~H~vc~~CG 50 (60)
T 3v2d_5 32 PCPECKAMK-----------PPHTVCPECG 50 (60)
T ss_dssp ECTTTCCEE-----------CTTSCCTTTC
T ss_pred ECCCCCCee-----------cceEEcCCCC
Confidence 899999732 2345699998
No 67
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=22.58 E-value=49 Score=22.88 Aligned_cols=12 Identities=0% Similarity=-0.020 Sum_probs=9.0
Q ss_pred cCCccCccccch
Q 013725 355 QSNFRDAATSAE 366 (437)
Q Consensus 355 ~~~~~cp~~~~~ 366 (437)
+....||.||..
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 445689999965
No 68
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=22.06 E-value=53 Score=22.44 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=8.8
Q ss_pred cCCccCccccch
Q 013725 355 QSNFRDAATSAE 366 (437)
Q Consensus 355 ~~~~~cp~~~~~ 366 (437)
+....||.||..
T Consensus 33 P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 33 PDDWVCPLCGAP 44 (52)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 345689999965
No 69
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=21.21 E-value=1.6e+02 Score=22.28 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=20.8
Q ss_pred HHHHHHHHHhccCCCcEEEcHHHHHHHHHhCCc
Q 013725 286 RLIGKYFEEISQDTGKYVFGVDDTLKALELGAV 318 (437)
Q Consensus 286 ~ll~~f~~~~~~~~g~a~yG~~eV~~Al~~GaV 318 (437)
++++.|.+.+. +......++...++..|..
T Consensus 2 ~~~~~y~~~~~---~~~~~~~~~~~~~~~~~~~ 31 (118)
T 1zma_A 2 NAMEQFLDNIK---DLEVTTVVRAQEALDKKET 31 (118)
T ss_dssp HHHHHHHHHTT---TSEECCHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHh---hhhcCCHHHHHHHHhCCCe
Confidence 45677777665 4566677888888887753
Done!