Your job contains 1 sequence.
>013726
MRWKRHSTVHFQDDVKQIPHSSIRRSSSVFDSLSNSLCVNYFVTESKKSKNNNNSLALRF
VLHQWKEFQFQLSLRLFSFIDQSKVKIFERVNQVQEGKKERKKETMAVVESASQDSAVSS
AGSIPASNGQDHPKQNGGTMVMPLDQGLYNQNNQRSNGGGDFKRDMRELQELFSKLNPMA
EEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQGKR
RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF
IEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTN
IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILH
NPSIAWLEEFSGEYLLG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013726
(437 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2035629 - symbol:CID11 "CTC-interacting domain... 973 5.8e-98 1
TAIR|locus:2139242 - symbol:CID12 "CTC-interacting domain... 822 2.3e-97 2
TAIR|locus:2082961 - symbol:CID10 "CTC-interacting domain... 763 2.4e-85 2
TAIR|locus:2091657 - symbol:CID9 "CTC-interacting domain ... 704 1.6e-75 2
TAIR|locus:2024842 - symbol:CID8 "CTC-interacting domain ... 685 9.7e-72 2
TAIR|locus:2184022 - symbol:CID13 "CTC-interacting domain... 641 8.8e-63 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 130 6.9e-08 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 130 6.9e-08 1
ZFIN|ZDB-GENE-040801-132 - symbol:srek1 "splicing regulat... 147 3.0e-07 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 124 3.1e-07 1
RGD|621696 - symbol:Srek1 "splicing regulatory glutamine/... 145 4.7e-07 1
UNIPROTKB|Q9JKL7 - symbol:Srek1 "Splicing regulatory glut... 145 4.7e-07 1
MGI|MGI:2145245 - symbol:Srek1 "splicing regulatory gluta... 145 4.7e-07 1
UNIPROTKB|Q8WXA9 - symbol:SREK1 "Splicing regulatory glut... 145 4.9e-07 1
UNIPROTKB|E2R749 - symbol:SREK1 "Uncharacterized protein"... 145 5.0e-07 1
UNIPROTKB|J9P0H2 - symbol:SREK1 "Uncharacterized protein"... 145 6.8e-07 1
UNIPROTKB|F1NA16 - symbol:Gga.54187 "Uncharacterized prot... 139 3.5e-06 2
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 132 5.2e-06 1
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 132 5.2e-06 1
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 126 6.4e-06 1
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 130 6.8e-06 1
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 130 8.9e-06 1
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 130 8.9e-06 1
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 130 8.9e-06 1
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 130 8.9e-06 1
UNIPROTKB|Q7ZXB8 - symbol:pabpn1-b "Polyadenylate-binding... 128 1.4e-05 1
UNIPROTKB|Q6NVP7 - symbol:pabpn1 "Polyadenylate-binding p... 128 1.4e-05 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 131 2.3e-05 1
UNIPROTKB|Q9DDY9 - symbol:pabpn1-a "Polyadenylate-binding... 126 2.4e-05 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 127 3.4e-05 1
POMBASE|SPAC19G12.07c - symbol:rsd1 "RNA-binding protein ... 128 4.9e-05 1
DICTYBASE|DDB_G0275459 - symbol:DDB_G0275459 "RNA-binding... 109 6.3e-05 2
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 116 7.9e-05 1
GENEDB_PFALCIPARUM|PFF0300w - symbol:PFF0300w "RNA-bindin... 129 8.0e-05 2
TAIR|locus:2831834 - symbol:AT5G03580 species:3702 "Arabi... 101 9.9e-05 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 117 0.00011 1
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 116 0.00014 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 122 0.00016 1
FB|FBgn0005648 - symbol:Pabp2 "Pabp2" species:7227 "Droso... 115 0.00020 1
UNIPROTKB|Q28ZX3 - symbol:Pabp2 "Polyadenylate-binding pr... 115 0.00021 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 98 0.00021 1
UNIPROTKB|I3LCY5 - symbol:LOC100525398 "Uncharacterized p... 117 0.00025 1
CGD|CAL0003946 - symbol:orf19.1389 species:5476 "Candida ... 108 0.00027 1
TAIR|locus:2100696 - symbol:PHIP1 "phragmoplastin interac... 121 0.00029 1
UNIPROTKB|E1B908 - symbol:E1B908 "Uncharacterized protein... 115 0.00040 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 95 0.00044 1
ZFIN|ZDB-GENE-040426-2401 - symbol:pabpn1 "poly(A) bindin... 114 0.00049 1
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 119 0.00052 1
ASPGD|ASPL0000007134 - symbol:AN6256 species:162425 "Emer... 104 0.00056 1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 94 0.00057 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 113 0.00075 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 114 0.00087 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 114 0.00087 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 114 0.00087 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 117 0.00091 1
POMBASE|SPBC1861.04c - symbol:SPBC1861.04c "RNA-binding p... 119 0.00093 1
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 92 0.00094 1
>TAIR|locus:2035629 [details] [associations]
symbol:CID11 "CTC-interacting domain 11" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0046482 "para-aminobenzoic acid metabolic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
IPI:IPI00657306 RefSeq:NP_001031131.1 UniGene:At.27546
ProteinModelPortal:F4IEC7 SMR:F4IEC7 PRIDE:F4IEC7
EnsemblPlants:AT1G32790.2 GeneID:840173 KEGG:ath:AT1G32790
OMA:NARTSMA PhylomeDB:F4IEC7 Uniprot:F4IEC7
Length = 406
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 204/298 (68%), Positives = 227/298 (76%)
Query: 112 ASQDSAVSSAGSIPASNGQDHPKQNGGTMVMPLDQGLYNQNNQ---RSNG--GGD-FKRD 165
+S S+++S S +S+ Q+H + V+ DQGLY++ RS+G GG+ FKRD
Sbjct: 25 SSPPSSMTSQDSGVSSDDQNHHSRID--QVLRHDQGLYSKIGSHVARSDGVDGGESFKRD 82
Query: 166 MRELQELFSKLNPMAEEFVPPSLAKTXXXXXXXXXXXXXXXXXXSLIFXXXXXXXXXXXX 225
MRELQELFSKLNPMAEEFVPPSL K + F
Sbjct: 83 MRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTGNGGYGNEN 142
Query: 226 XXXXXXKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD 285
KKSFGQGKRRMN+RTS+AQRE++IRRTVYVSD+DQQVTEEQLA LFV CGQVVD
Sbjct: 143 GGFRR-KKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVD 201
Query: 286 CRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT 345
CRICGDPNSVLRFAFIEFTDEEGA ALNL+GTMLGFYPV+VLPSKTAIAPVNPTFLPRT
Sbjct: 202 CRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRT 261
Query: 346 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 403
EDEREMCARTIYCTNIDKKVTQ+DVK+FFES CGEVYRLRLLGDY HSTRIAFVEFVM
Sbjct: 262 EDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVM 319
Score = 148 (57.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEEGARA 311
E+ RT+Y ++ID++VT+ + F CG+V R+ GD R AF+EF E A A
Sbjct: 266 EMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIA 325
Query: 312 ALNLAGTMLGFYPVR 326
ALN +G +LG P+R
Sbjct: 326 ALNCSGVVLGSLPIR 340
Score = 39 (18.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 106 MAVVESASQDSAVSSAGSIPASNGQDHPKQNGGTMVMPLDQGLYNQNNQRSNGGGDFKRD 165
MAVVE+ + +A + G + Q P +M D G+ + ++Q + D +
Sbjct: 1 MAVVETGAAATAADAGGVVI----QPPPSSPPSSMTSQ-DSGV-SSDDQNHHSRID--QV 52
Query: 166 MRELQELFSKL 176
+R Q L+SK+
Sbjct: 53 LRHDQGLYSKI 63
>TAIR|locus:2139242 [details] [associations]
symbol:CID12 "CTC-interacting domain 12" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 InterPro:IPR009818 Pfam:PF07145 EMBL:AL161517
EMBL:AL049523 EMBL:AF118222 EMBL:AF109721 EMBL:AY039599
EMBL:AY078011 EMBL:AY086286 IPI:IPI00524673 PIR:T04196
RefSeq:NP_192799.1 UniGene:At.24082 ProteinModelPortal:Q9S7N9
SMR:Q9S7N9 STRING:Q9S7N9 PRIDE:Q9S7N9 EnsemblPlants:AT4G10610.1
GeneID:826653 KEGG:ath:AT4G10610 TAIR:At4g10610 InParanoid:Q9S7N9
OMA:DMRELHE PhylomeDB:Q9S7N9 ProtClustDB:CLSN2682834
ArrayExpress:Q9S7N9 Genevestigator:Q9S7N9 Uniprot:Q9S7N9
Length = 336
Score = 822 (294.4 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 158/173 (91%), Positives = 164/173 (94%)
Query: 232 KKSFGQ-GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG 290
KKSFGQ GKRRMN RTSLAQREEIIRRTVYVSDIDQQVTEEQLA LF+G GQVVDCRICG
Sbjct: 124 KKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICG 183
Query: 291 DPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDERE 350
DPNSVLRFAFIEFTDE GAR ALNL+GTMLGFYPV+V+PSKTAIAPVNPTFLPRTEDERE
Sbjct: 184 DPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDERE 243
Query: 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 403
MCARTIYCTNIDKK+TQ D+KLFFESVCGEVYRLRLLGDYHH TRI FVEFVM
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVM 296
Score = 174 (66.3 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEEGARA 311
E+ RT+Y ++ID+++T+ + F CG+V R+ GD + R F+EF E A A
Sbjct: 243 EMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIA 302
Query: 312 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 344
ALN +G +LG P+RV PSKT PV +PR
Sbjct: 303 ALNCSGVLLGSLPIRVSPSKT---PVRSRAIPR 332
Score = 165 (63.1 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 40/90 (44%), Positives = 52/90 (57%)
Query: 106 MAVVESASQDSAVSSAGSIPASNGQDHPKQNGGTMVMPLD--QGLYNQ---NNQRSNGGG 160
MAV+ES ++ V + G I S Q G G++++ + RS+GG
Sbjct: 1 MAVIESVGANTTVEAGGLISPSPPSSVTSQESGASSNNDHGGNGIHDEIGVHVARSDGGE 60
Query: 161 DFKRDMRELQELFSKLNPMAEEFVPPSLAK 190
FKRDMREL EL SKLNPMA+EF+PPSL K
Sbjct: 61 SFKRDMRELHELLSKLNPMAKEFIPPSLTK 90
Score = 94 (38.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 343 PRTE--DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVE 400
PRT E+ RT+Y ++ID++VT+ + F G+V R+ GD + R AF+E
Sbjct: 137 PRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGF-GQVVDCRICGDPNSVLRFAFIE 195
Query: 401 FVMVIASST 409
F + + T
Sbjct: 196 FTDEVGART 204
>TAIR|locus:2082961 [details] [associations]
symbol:CID10 "CTC-interacting domain 10" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 EMBL:AC012329
EMBL:AL132956 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818
Pfam:PF07145 EMBL:AK317338 IPI:IPI00545615 PIR:T45844
RefSeq:NP_001030833.1 RefSeq:NP_190508.1 UniGene:At.738
ProteinModelPortal:Q9SG10 SMR:Q9SG10 PRIDE:Q9SG10
EnsemblPlants:AT3G49390.1 EnsemblPlants:AT3G49390.2 GeneID:824101
KEGG:ath:AT3G49390 TAIR:At3g49390 InParanoid:Q9SG10 OMA:ETDDRIN
PhylomeDB:Q9SG10 ProtClustDB:CLSN2684239 Genevestigator:Q9SG10
Uniprot:Q9SG10
Length = 353
Score = 763 (273.6 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
Identities = 141/188 (75%), Positives = 167/188 (88%)
Query: 232 KKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD 291
++SFGQGKRRMN RTSLAQ++++IRRTVYVSDIDQQVTEE LA +F+ CGQVVDCR+CGD
Sbjct: 144 RRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGD 203
Query: 292 PNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREM 351
PNSVLRFAFIEFT+EEGARAAL+++GT+LGFYP++VLPSKTAIAPVNPTFLPR+EDEREM
Sbjct: 204 PNSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREM 263
Query: 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLF 411
C RT+YCTNIDK++TQ D+K FFE +CGEV+RLRL GDYHH TRIAFVEF M S+
Sbjct: 264 CVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMA-ESAIAA 321
Query: 412 IHTEFYIL 419
+H +L
Sbjct: 322 LHCSGIVL 329
Score = 172 (65.6 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
Identities = 44/98 (44%), Positives = 61/98 (62%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLRFAFIEFTDEEG 308
+RE +R TVY ++ID+++T+ L F + CG+V R+ GD + R AF+EF E
Sbjct: 260 EREMCVR-TVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAES 317
Query: 309 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTE 346
A AAL+ +G +LG P+RV PSKT PV P F PR E
Sbjct: 318 AIAALHCSGIVLGALPIRVSPSKT---PVRPHF-PRAE 351
Score = 110 (43.8 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 146 QGLYNQNNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKT 191
Q + N NG D ++++L + FSKLNPMA+EFVPPSLA++
Sbjct: 67 QKVQTLNGFSGNGERDNNGEIKDLADAFSKLNPMAQEFVPPSLARS 112
>TAIR|locus:2091657 [details] [associations]
symbol:CID9 "CTC-interacting domain 9" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB028617 HSSP:P11940 HOGENOM:HOG000006309 IPI:IPI00526270
RefSeq:NP_188063.1 UniGene:At.53311 ProteinModelPortal:Q9LRR6
SMR:Q9LRR6 EnsemblPlants:AT3G14450.1 GeneID:820668
KEGG:ath:AT3G14450 TAIR:At3g14450 eggNOG:NOG243629
InParanoid:Q9LRR6 OMA:PRVNRVG PhylomeDB:Q9LRR6
ProtClustDB:CLSN2915572 Genevestigator:Q9LRR6 Uniprot:Q9LRR6
Length = 327
Score = 704 (252.9 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
Identities = 136/179 (75%), Positives = 152/179 (84%)
Query: 232 KKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD 291
++++ QG+RR+ R S AQRE+ IRRTVYVSDIDQ VTEE LA LF CGQVVDCRICGD
Sbjct: 116 RRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGD 175
Query: 292 PNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREM 351
P+SVLRFAF+EF D++GA AL+L GTMLGFYPVRVLPSKTAI PVNPTFLPR+EDEREM
Sbjct: 176 PHSVLRFAFVEFADDQGAHEALSLGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREM 235
Query: 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTL 410
C RTIYCTNIDKKV+QADV+ FFES CGEV RLRLLGD HSTRIAFVEF + A S L
Sbjct: 236 CTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFAL--ADSAL 292
Score = 163 (62.4 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEEGARA 311
E+ RT+Y ++ID++V++ + F CG+V R+ GD R AF+EF + A +
Sbjct: 234 EMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADSALS 293
Query: 312 ALNLAGTMLGFYPVRVLPSKTAIAP 336
ALN +G ++G P+RV PSKT + P
Sbjct: 294 ALNCSGMVVGSQPIRVSPSKTPVRP 318
Score = 76 (31.8 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 144 LDQGLYNQNNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVP 185
+D+G+ + S + + DM +L +F KLNP+A+EF P
Sbjct: 28 IDEGIEKSSITDSKTETESRLDMHKLVAMFKKLNPLAKEFFP 69
>TAIR|locus:2024842 [details] [associations]
symbol:CID8 "CTC-interacting domain 8" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AC024260 HSSP:P11940 EMBL:BT014885 IPI:IPI00524059 PIR:F96576
RefSeq:NP_175769.1 UniGene:At.37370 ProteinModelPortal:Q9C8M0
SMR:Q9C8M0 STRING:Q9C8M0 EnsemblPlants:AT1G53650.1 GeneID:841802
KEGG:ath:AT1G53650 TAIR:At1g53650 HOGENOM:HOG000006309
InParanoid:Q9C8M0 OMA:ITEMATD PhylomeDB:Q9C8M0
ProtClustDB:CLSN2682126 Genevestigator:Q9C8M0 Uniprot:Q9C8M0
Length = 314
Score = 685 (246.2 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
Identities = 129/173 (74%), Positives = 148/173 (85%)
Query: 232 KKSFGQGKR-RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG 290
+ ++ QG+R R+ R S AQRE+ IRRTVYVSDIDQ VTEE LA LF CGQVVDCRICG
Sbjct: 102 RNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICG 161
Query: 291 DPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDERE 350
DPNSVLRFAF+EF+D++GAR+AL+L GTM+G+YPVRVLPSKTAI PVNPTFLPR+EDERE
Sbjct: 162 DPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDERE 221
Query: 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 403
MC+RTIYCTN+DK T+ DV FF+S CGEV RLRLLGD HSTRIAFVEF M
Sbjct: 222 MCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAM 274
Score = 171 (65.3 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEEGARA 311
E+ RT+Y +++D+ TE+ + F CG+V R+ GD R AF+EF E A A
Sbjct: 221 EMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVA 280
Query: 312 ALNLAGTMLGFYPVRVLPSKTAI 334
ALN +G +LG P+RV PSKT +
Sbjct: 281 ALNCSGIVLGSQPIRVSPSKTPV 303
Score = 59 (25.8 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 166 MRELQELFSKLNPMAEEFVP 185
M++L +F KLNP A+EF P
Sbjct: 50 MKKLVAMFKKLNPEAKEFFP 69
>TAIR|locus:2184022 [details] [associations]
symbol:CID13 "CTC-interacting domain 13" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB025641 HOGENOM:HOG000006309 IPI:IPI00536712
RefSeq:NP_197832.1 UniGene:At.54975 ProteinModelPortal:Q9FGE6
SMR:Q9FGE6 EnsemblPlants:AT5G24440.1 GeneID:832515
KEGG:ath:AT5G24440 TAIR:At5g24440 eggNOG:NOG303272
InParanoid:Q9FGE6 OMA:FKLAESA PhylomeDB:Q9FGE6
ProtClustDB:CLSN2916288 Genevestigator:Q9FGE6 Uniprot:Q9FGE6
Length = 320
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 127/233 (54%), Positives = 165/233 (70%)
Query: 169 LQELFSKLNPMAEEFVPPSLAKTXXXXXXXXXXXXXXXXXXSLIFXXXXXXXXXXXXXXX 228
L+ S LNPMA+EFVP LA+T IF
Sbjct: 59 LKSEISHLNPMAKEFVPSFLAQTHHSEFWGNRFWFTNHFPKQTIFLIGQFATM------- 111
Query: 229 XXXKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRI 288
+++FG+G+ + +T+L Q E++I+RTVYVSDID QVTEEQLA+LF+ CGQVVDCR+
Sbjct: 112 ---RRNFGKGRPWITKKTNLVQNEDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCRM 168
Query: 289 CGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE 348
CGD S+LRFAFIEFTD EGAR+AL +GTM G +P+RV SKTAIAPVNP+FLP+++DE
Sbjct: 169 CGDYKSILRFAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDE 228
Query: 349 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF 401
E C +T+YCTNIDK+VT+ +++ FF++VCGEV+ LRLLGD++H TRIAFVEF
Sbjct: 229 LEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEF 281
Score = 158 (60.7 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 257 RTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNL 315
+TVY ++ID++VT+ +L F CG+V R+ GD R AF+EF E A +ALN
Sbjct: 234 KTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESAISALNC 293
Query: 316 AGTMLGFYPVRVLPSKTAI 334
+G +LG P+RV PSKT +
Sbjct: 294 SGVVLGELPIRVSPSKTPV 312
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 130 (50.8 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 34 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 90
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 91 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 121
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 130 (50.8 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 34 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 90
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 91 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 121
>ZFIN|ZDB-GENE-040801-132 [details] [associations]
symbol:srek1 "splicing regulatory
glutamine/lysine-rich protein 1" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040801-132 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 OrthoDB:EOG4K3KWS HOGENOM:HOG000121772
EMBL:BX950207 EMBL:CU207241 EMBL:CU467961 IPI:IPI00497438
UniGene:Dr.81675 Ensembl:ENSDART00000134937 HOVERGEN:HBG097523
InParanoid:A2BIN4 Uniprot:A2BIN4
Length = 515
Score = 147 (56.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 255 IRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 313
IRRTVYV +++ Q T +QL F G V R+ GD RFAF+EF D++ AL
Sbjct: 169 IRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVARAL 228
Query: 314 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 344
G M G P+++ S AI P P+
Sbjct: 229 TYNGVMFGDRPLKINHSNNAIVKP-PELTPQ 258
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 124 (48.7 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 32/89 (35%), Positives = 49/89 (55%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFIEFTD 305
+E I ++VYV ++D VT E+L + F CG V + C + G P FA+IEF++
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAYIEFSE 105
Query: 306 EEGARAALNLAGTMLGFYPVRVLPSKTAI 334
AL L G+ML P++V P +T +
Sbjct: 106 PSLVPNALLLNGSMLHERPLKVTPKRTNV 134
>RGD|621696 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:621696 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 KO:K13165 CTD:140890
HOVERGEN:HBG079174 OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759
RefSeq:NP_064477.1 UniGene:Rn.161755 ProteinModelPortal:Q9JKL7
STRING:Q9JKL7 PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763
UCSC:RGD:621696 eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 145 (56.1 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ AL
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 126
Query: 314 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 344
G M G P+++ S AI P P+
Sbjct: 127 AFNGVMFGDRPLKINHSNNAIVKP-PEMTPQ 156
Score = 119 (46.9 bits), Expect = 0.00036, P = 0.00036
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 309 ARAALNLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRTEDER-EMCARTIYCTNIDKKV 365
A ++L ++ + LG P L P+ TA+ + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 366 TQADVKL-FFESVCGEVYRLRLLGDYHHSTRIAFVEF 401
T AD L FF+ V GEV +R+ GD TR AFVEF
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEF 116
>UNIPROTKB|Q9JKL7 [details] [associations]
symbol:Srek1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:621696 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003676 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759 RefSeq:NP_064477.1
UniGene:Rn.161755 ProteinModelPortal:Q9JKL7 STRING:Q9JKL7
PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763 UCSC:RGD:621696
eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 145 (56.1 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ AL
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 126
Query: 314 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 344
G M G P+++ S AI P P+
Sbjct: 127 AFNGVMFGDRPLKINHSNNAIVKP-PEMTPQ 156
Score = 119 (46.9 bits), Expect = 0.00036, P = 0.00036
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 309 ARAALNLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRTEDER-EMCARTIYCTNIDKKV 365
A ++L ++ + LG P L P+ TA+ + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 366 TQADVKL-FFESVCGEVYRLRLLGDYHHSTRIAFVEF 401
T AD L FF+ V GEV +R+ GD TR AFVEF
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEF 116
>MGI|MGI:2145245 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2145245 GO:GO:0005739
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OMA:EKEQDKD OrthoDB:EOG4K3KWS EMBL:AK033354 EMBL:AK037115
EMBL:AK039311 EMBL:AK044086 EMBL:AK052265 EMBL:BC070460
IPI:IPI00227738 IPI:IPI00379480 RefSeq:NP_766180.1
UniGene:Mm.458176 ProteinModelPortal:Q8BZX4 SMR:Q8BZX4
STRING:Q8BZX4 PhosphoSite:Q8BZX4 PaxDb:Q8BZX4 PRIDE:Q8BZX4
Ensembl:ENSMUST00000074616 GeneID:218543 KEGG:mmu:218543
UCSC:uc007rsh.1 InParanoid:Q8BZX4 NextBio:376337 Bgee:Q8BZX4
CleanEx:MM_SFRS12 Genevestigator:Q8BZX4
GermOnline:ENSMUSG00000032621 Uniprot:Q8BZX4
Length = 494
Score = 145 (56.1 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ AL
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 126
Query: 314 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 344
G M G P+++ S AI P P+
Sbjct: 127 AFNGVMFGDRPLKINHSNNAIVKP-PEMTPQ 156
>UNIPROTKB|Q8WXA9 [details] [associations]
symbol:SREK1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 eggNOG:NOG277302 KO:K13165
EMBL:AF459094 EMBL:BC047322 EMBL:BC067770 EMBL:BC112343
IPI:IPI00103497 IPI:IPI00375462 RefSeq:NP_001070667.1
RefSeq:NP_001257421.1 RefSeq:NP_631907.1 UniGene:Hs.49367
UniGene:Hs.519347 ProteinModelPortal:Q8WXA9 SMR:Q8WXA9
IntAct:Q8WXA9 STRING:Q8WXA9 PhosphoSite:Q8WXA9 DMDM:37537968
PaxDb:Q8WXA9 PeptideAtlas:Q8WXA9 PRIDE:Q8WXA9
Ensembl:ENST00000334121 Ensembl:ENST00000380918 GeneID:140890
KEGG:hsa:140890 UCSC:uc003jun.3 UCSC:uc003juo.3 CTD:140890
GeneCards:GC05P065435 HGNC:HGNC:17882 HPA:HPA037674 MIM:609268
neXtProt:NX_Q8WXA9 PharmGKB:PA38255 HOVERGEN:HBG079174
InParanoid:Q8WXA9 OMA:EKEQDKD OrthoDB:EOG4K3KWS ChiTaRS:SREK1
GenomeRNAi:140890 NextBio:84548 ArrayExpress:Q8WXA9 Bgee:Q8WXA9
CleanEx:HS_SFRS12 Genevestigator:Q8WXA9 GermOnline:ENSG00000153914
Uniprot:Q8WXA9
Length = 508
Score = 145 (56.1 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ AL
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 123
Query: 314 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 344
G M G P+++ S AI P P+
Sbjct: 124 AFNGVMFGDRPLKINHSNNAIVKP-PEMTPQ 153
>UNIPROTKB|E2R749 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
EMBL:AAEX03001478 Ensembl:ENSCAFT00000012107 Uniprot:E2R749
Length = 510
Score = 145 (56.1 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ AL
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 123
Query: 314 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 344
G M G P+++ S AI P P+
Sbjct: 124 AFNGVMFGDRPLKINHSNNAIVKP-PEMTPQ 153
>UNIPROTKB|J9P0H2 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104035 KO:K13165 CTD:140890 OMA:EKEQDKD
EMBL:AAEX03001478 RefSeq:XP_544361.3 Ensembl:ENSCAFT00000044884
GeneID:487233 KEGG:cfa:487233 Uniprot:J9P0H2
Length = 626
Score = 145 (56.1 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ AL
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 239
Query: 314 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 344
G M G P+++ S AI P P+
Sbjct: 240 AFNGVMFGDRPLKINHSNNAIVKP-PEMTPQ 269
Score = 107 (42.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 313 LNLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRTEDER-EMCARTIYCTNIDKKVTQAD 369
L ++ + LG P L P+ + + P + + + + RT+Y N++ + T AD
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 197
Query: 370 VKL-FFESVCGEVYRLRLLGDYHHSTRIAFVEF 401
L FF+ V GEV +R+ GD TR AFVEF
Sbjct: 198 QLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEF 229
Score = 72 (30.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA----FIEFTDEEGARAALN 314
+ V+++ VT EQ+ LF G++ + R+ N+ L F+ +++F D A +
Sbjct: 21 IQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKFRDPSSVGVAQH 80
Query: 315 LAGTM 319
L T+
Sbjct: 81 LTNTV 85
>UNIPROTKB|F1NA16 [details] [associations]
symbol:Gga.54187 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
OMA:EKEQDKD EMBL:AADN02045988 EMBL:AADN02045989 EMBL:AADN02045990
EMBL:AADN02045991 EMBL:AADN02045992 EMBL:AADN02045993
IPI:IPI00583646 Ensembl:ENSGALT00000023839 Uniprot:F1NA16
Length = 475
Score = 139 (54.0 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 36/103 (34%), Positives = 49/103 (47%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ AL
Sbjct: 166 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 225
Query: 314 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTI 356
G M G P++ + F+ TE CAR +
Sbjct: 226 AFNGVMFGDRPLKFVNHSIK----QSDFVQLTEVVHSTCARLL 264
Score = 116 (45.9 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 317 GTMLGFYPVRVL-PSKTAIAPV-NPTFLPRTEDER-EMCARTIYCTNIDKKVTQADVKL- 372
GT LG P L P+ TA+ + P + + + + RT+Y N++ + T AD L
Sbjct: 129 GT-LGAIPAAALDPNITALGEIPQPPIMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLE 187
Query: 373 FFESVCGEVYRLRLLGDYHHSTRIAFVEF 401
FF+ V GEV +R+ GD TR AFVEF
Sbjct: 188 FFKQV-GEVKFVRMAGDETQPTRFAFVEF 215
Score = 64 (27.6 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA----FIEFTDEEGARAALN 314
+ V+++ VT EQ+ LF G + + R+ N+ L F+ +I+F + A +
Sbjct: 7 IQVTNLSLAVTSEQMRTLFGFLGDIEELRLYPPDNAPLAFSSKVCYIKFREASSVGVAQH 66
Query: 315 LAGTM 319
L T+
Sbjct: 67 LTNTV 71
Score = 37 (18.1 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 105 TMAVVESASQDSAVSSAGSIP 125
T+ + +A+ D +++ G IP
Sbjct: 130 TLGAIPAAALDPNITALGEIP 150
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 132 (51.5 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 32/91 (35%), Positives = 51/91 (56%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 158 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 214
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 215 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 245
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 132 (51.5 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 32/91 (35%), Positives = 51/91 (56%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 158 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 214
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 215 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 245
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 126 (49.4 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 34/98 (34%), Positives = 52/98 (53%)
Query: 243 NSRTSLAQREEIIR---RTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNS 294
NS SL EE ++VYV ++D T E++ F GCG V + C R G P
Sbjct: 61 NSSQSLLTPEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKG 120
Query: 295 VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
FA++EFT++EG + AL + ++L ++V P +T
Sbjct: 121 ---FAYVEFTEKEGMQNALAMTDSLLRGRQIKVDPKRT 155
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 130 (50.8 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 131 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 187
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 188 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 218
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 130 (50.8 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 219 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 130 (50.8 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 219 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 130 (50.8 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 219 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 130 (50.8 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 219 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 152 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYI 208
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 209 EFSDKESVRTSLALDESLFRGRQIKVVPKRT 239
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 153 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYI 209
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 210 EFSDKESVRTSLALDESLFRGRQIKVVPKRT 240
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 131 (51.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 44/151 (29%), Positives = 73/151 (48%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGAR-AALNLA 316
+Y+ ++D V+E+ L F G++V I D N + R +AF+ F + E AR AA +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 317 GTMLG---FYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--IYCTNIDKKVTQADVK 371
GT G Y R + F + E E++M A+ IY N++ VT+ +++
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHE-EQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 372 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEF 401
F S CG + +L+ D ++ FV F
Sbjct: 322 KHF-SQCGTITSTKLMCDEKGKSKGFGFVCF 351
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 126 (49.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 153 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYI 209
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF D+E R +L L ++ ++V+P +T
Sbjct: 210 EFCDKESVRTSLALDESLFRGRQIKVVPKRT 240
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 127 (49.8 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 39/157 (24%), Positives = 71/157 (45%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALN 314
R V+V ++D+ + +QL +F G+V+ C++ D + V + + F++F + A N
Sbjct: 30 RGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACN 89
Query: 315 LA-GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 373
GT++ + V P F+ R + ++ +Y N+ + T AD+K
Sbjct: 90 FHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLKRL 138
Query: 374 FESVCGEVYRLRLLGDYH-HSTRIAFVEFVMVIASST 409
F GE+ ++ D S R FV F A+ T
Sbjct: 139 FGEF-GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVT 174
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 128 (50.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 50/172 (29%), Positives = 78/172 (45%)
Query: 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVL 296
+ + R R+S EE RRTV+VS + ++T +L F G V D +I D S
Sbjct: 220 RSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGR 279
Query: 297 R--FAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR 354
A++EF E+ +AA+ L+G L PV V ++ A N E R A
Sbjct: 280 SKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTE---AEKNRKAREAAELARAASAE 336
Query: 355 TIY---C-TNIDKKVTQADVKLFFESVCGEVYRLRLL-GDYHHSTRIAFVEF 401
+ C +NI +T DVK FE G++ + L D + S ++++
Sbjct: 337 IPFHRLCVSNIHFNLTDEDVKAIFEPF-GDIEFVHLQRDDQNRSKGFGYIQY 387
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 109 (43.4 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 51/175 (29%), Positives = 78/175 (44%)
Query: 232 KKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG- 290
K +F + + +S + ++ ++ V+V + VTE L F CG + + +I
Sbjct: 53 KSTFTKKESAAKDESSNTKTDDDLK--VFVGQLPSGVTEYDLKEYFSECGDISNIKILNS 110
Query: 291 DPNSVLRFAFIEFTDEEGARAALNLAGTML-GFYPVRVLPSKTAIAPVNPTFLPRTEDER 349
+P V AFI F DE+G A+ G G +R+ + + P+ + E
Sbjct: 111 NPQRVA--AFITFADEKGRDTAITYNGKDFNGQGSLRINGANS-----KPS-----DGEG 158
Query: 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI---AFVEF 401
E TI C NI V + VK FF S CG + R+ L Y S R+ AFV F
Sbjct: 159 E--PTTIVCRNIAFTVDETLVKEFF-SKCGSISRVSL-PVYEDSGRLKGFAFVSF 209
Score = 53 (23.7 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 96 EGKKERKKETMAVVESASQDSAVSSAGS 123
E KK +K+E+ + ES+ +++A SS+ S
Sbjct: 9 ESKKRKKEESESETESSEENNASSSSES 36
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 116 (45.9 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 32/96 (33%), Positives = 48/96 (50%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV--VDC---RICGDPNSVLRFAFIEFT 304
+R + RR++YV ++D T ++L F CG V V R G P FA+IEF+
Sbjct: 59 ERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKG---FAYIEFS 115
Query: 305 DEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 340
D E R A+ L T+ ++V P +T I + T
Sbjct: 116 DRESVRTAMALDETLFRGRVIKVSPKRTNIPGFSTT 151
>GENEDB_PFALCIPARUM|PFF0300w [details] [associations]
symbol:PFF0300w "RNA-binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL844505 RefSeq:XP_966051.1
ProteinModelPortal:C6KSQ9 EnsemblProtists:PFF0300w:mRNA
GeneID:3885781 KEGG:pfa:PFF0300w EuPathDB:PlasmoDB:PF3D7_0606100
HOGENOM:HOG000281446 ProtClustDB:CLSZ2497377 Uniprot:C6KSQ9
Length = 582
Score = 129 (50.5 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 28/92 (30%), Positives = 52/92 (56%)
Query: 237 QGKRRMNSRTSLAQRE---EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN 293
Q KR ++ + SL ++ ++ + VY+ +I ++ EE + A F G ++ +
Sbjct: 131 QKKRLVDFQNSLNEKNNKFDVFSKIVYMENIPEKYGEEDIKAFFQNVGNTTSYKLQYNEQ 190
Query: 294 SVLRFAFIEFTDEEGARAALNLAGTMLGFYPV 325
+ AF+EF +EE A+AALNL+GT +G + +
Sbjct: 191 KKVHTAFVEFKNEEHAKAALNLSGTKVGLHEI 222
Score = 91 (37.1 bits), Expect = 0.00052, Sum P(2) = 0.00051
Identities = 26/97 (26%), Positives = 41/97 (42%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN 314
I VYV ++ +TEE + F C +++ P ++ IEF EG A
Sbjct: 7 IANVVYVKNLSSDITEENIREKFGSCDEIISITFKNFPGLNQKYCQIEFKTSEGITNASR 66
Query: 315 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREM 351
L G L P+ V + I N + L TE ++ +
Sbjct: 67 LNGESLLNVPMVVSVIEPIINNTNLSELSTTECDKNV 103
Score = 72 (30.4 bits), Expect = 0.00052, Sum P(2) = 0.00051
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF 401
++ ++ +Y NI +K + D+K FF++V G +L + AFVEF
Sbjct: 150 DVFSKIVYMENIPEKYGEEDIKAFFQNV-GNTTSYKLQYNEQKKVHTAFVEF 200
Score = 39 (18.8 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGE 380
E+C R Y DK + + + + + GE
Sbjct: 221 EICIRDAYSLINDKDILKNNFSFYSNNTTGE 251
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 101 (40.6 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGA-RAALNL 315
++Y++++D QV+EE L +F G+V+ + D R FAFIEF + A RA L++
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77
Query: 316 AGTMLG 321
G ++G
Sbjct: 78 DGRLIG 83
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 29/99 (29%), Positives = 52/99 (52%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S +++EI +R+VYV ++D T + L A F CG + + C + G P +A+I
Sbjct: 83 SAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYI 139
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 340
EF + AA+ + T+ ++VLP +T + ++ T
Sbjct: 140 EFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISST 178
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 29/99 (29%), Positives = 52/99 (52%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S +++EI +R+VYV ++D T + L A F CG + + C + G P +A+I
Sbjct: 83 SAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYI 139
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 340
EF + AA+ + T+ ++VLP +T + ++ T
Sbjct: 140 EFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISST 178
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 41/148 (27%), Positives = 71/148 (47%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLA 316
+T+YV ++D V+E+ L ALF G V C+I +P + +AFIE+++ + A AL
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAATTALTAM 65
Query: 317 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 376
L + + + A +P N P+T+ I+ ++ ++ ++ F
Sbjct: 66 NKRL--FLEKEIKVNWATSPGNQ---PKTDISSH---HHIFVGDLSPEIETETLREAFAP 117
Query: 377 VCGEVYRLRLLGDYH--HSTRIAFVEFV 402
GE+ R++ D H S AFV FV
Sbjct: 118 F-GEISNCRIVRDPHTMKSKGYAFVSFV 144
>FB|FBgn0005648 [details] [associations]
symbol:Pabp2 "Pabp2" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS;IDA] [GO:0006378
"mRNA polyadenylation" evidence=ISS;IMP;IDA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0005737 GO:GO:0022008 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:NOG238057 GO:GO:0000289 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 EMBL:L23873 EMBL:L34934 EMBL:AF116341
EMBL:AY070631 EMBL:AY075519 RefSeq:NP_476902.1 RefSeq:NP_724648.1
UniGene:Dm.521 ProteinModelPortal:Q7KNF2 SMR:Q7KNF2 IntAct:Q7KNF2
STRING:Q7KNF2 PaxDb:Q7KNF2 PRIDE:Q7KNF2 EnsemblMetazoa:FBtr0088785
EnsemblMetazoa:FBtr0088786 GeneID:35788 KEGG:dme:Dmel_CG2163
CTD:35788 FlyBase:FBgn0005648 InParanoid:Q7KNF2 OMA:GRANYYA
OrthoDB:EOG4V9S6S PhylomeDB:Q7KNF2 ChiTaRS:PABP2 GenomeRNAi:35788
NextBio:795217 Bgee:Q7KNF2 GermOnline:CG2163 Uniprot:Q7KNF2
Length = 224
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRI-CGDPNSVLR-FAFIEFT 304
SL +++EI R+VYV ++D + E+L A F GCG + I C + + FA+IEF
Sbjct: 86 SLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFG 145
Query: 305 DEEGARAALNLAGTMLGFYPVRVLPSKT 332
+E AL + T+ ++V+ +T
Sbjct: 146 SKEFVETALAMNETLFRGRQIKVMSKRT 173
>UNIPROTKB|Q28ZX3 [details] [associations]
symbol:Pabp2 "Polyadenylate-binding protein 2"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0042802 "identical protein binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0042802 EMBL:CM000071 GenomeReviews:CM000071_GR
eggNOG:NOG238057 GO:GO:0008143 KO:K14396 OMA:GRANYYA
OrthoDB:EOG4V9S6S RefSeq:XP_001360914.1 ProteinModelPortal:Q28ZX3
SMR:Q28ZX3 GeneID:4804339 KEGG:dpo:Dpse_GA15278 FlyBase:FBgn0075302
InParanoid:Q28ZX3 Uniprot:Q28ZX3
Length = 225
Score = 115 (45.5 bits), Expect = 0.00021, P = 0.00021
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRI-CGDPNSVLR-FAFIEFT 304
SL +++EI R+VYV ++D + E+L A F GCG + I C + + FA+IEF
Sbjct: 86 SLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFG 145
Query: 305 DEEGARAALNLAGTMLGFYPVRVLPSKT 332
+E AL + T+ ++V+ +T
Sbjct: 146 SKEFVETALAMNETLFRGRQIKVMSKRT 173
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 98 (39.6 bits), Expect = 0.00021, P = 0.00021
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRI-CGDPNSVLR-FAFIEFTDEEGA-RAALN 314
+VYV + Q TEE+L F GQ+ + RI C R FAFIEF +E A RA
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 315 LAGTMLGFYPVRV 327
+ G P+RV
Sbjct: 66 MNGAEFNGRPLRV 78
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 117 (46.2 bits), Expect = 0.00025, P = 0.00025
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFIEFT 304
++ E R+VYV ++D + T +L A F CG++ + C + G P +A+IEF
Sbjct: 155 EKVEADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCDKFSGHPKG---YAYIEFA 211
Query: 305 DEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 340
E A+AA+ L ++ ++VLP +T ++ T
Sbjct: 212 TESSAQAAVELDNSVFRGRVIKVLPKRTNFPGISST 247
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 108 (43.1 bits), Expect = 0.00027, P = 0.00027
Identities = 33/88 (37%), Positives = 46/88 (52%)
Query: 248 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTD 305
LA++EEI R+VYV ++D Q T EQL F G G + I D S L +A+IEF
Sbjct: 19 LAKQEEIDGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQ 78
Query: 306 EEGARAALN-LAGTMLGFYPVRVLPSKT 332
E + A++ L G +RV +T
Sbjct: 79 TESVQKAIDELHGKEFRGRELRVTAKRT 106
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 121 (47.7 bits), Expect = 0.00029, P = 0.00029
Identities = 45/171 (26%), Positives = 77/171 (45%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV--VDCRICGDPNSVLRFAFIEF 303
T + + ++ +YV I Q TE+++ + F CG + VDC++ + + AFI F
Sbjct: 150 TDNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITF 209
Query: 304 TDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER----EMCA--RTIY 357
E+GA+ AL +G R L + + P+ +PR + EM +Y
Sbjct: 210 DTEDGAKRALAFDRAAMGD---RYLTIQQYVKTTTPS-IPRRKTSSGFAPEMVDGYNRVY 265
Query: 358 CTNIDKKVTQADV-KLFFESVCGEVYRL---RLLGDYHHSTRIAFVEFVMV 404
N+ T+ D+ KLF + V V RL + G++ + F + V V
Sbjct: 266 IGNLAWDTTERDIRKLFSDCVINSV-RLGKNKETGEFKGYAHVDFKDSVSV 315
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 115 (45.5 bits), Expect = 0.00040, P = 0.00040
Identities = 28/96 (29%), Positives = 52/96 (54%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFIEFT 304
++ E R++YV ++D T ++L A F CG++ + C + G P +A+IEF
Sbjct: 152 EKAEADHRSIYVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKG---YAYIEFA 208
Query: 305 DEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 340
E A+AA+ L ++ ++VLP +T + ++ T
Sbjct: 209 TESSAQAAVELDKSIFRGRVIKVLPKRTNLPGISST 244
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 95 (38.5 bits), Expect = 0.00044, P = 0.00044
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGA-RAALN 314
+VYV ++ Q TEE++ F G V + RI D + FAF+EF++E GA RA
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 315 LAGTMLGFYPVRV 327
L G +RV
Sbjct: 67 LNGVAFNGRNLRV 79
>ZFIN|ZDB-GENE-040426-2401 [details] [associations]
symbol:pabpn1 "poly(A) binding protein, nuclear 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2401 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 KO:K14396
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD
CTD:8106 EMBL:BX294113 EMBL:BC068437 EMBL:BC079522 IPI:IPI00508307
RefSeq:NP_001098602.1 RefSeq:NP_998424.1 UniGene:Dr.76617
SMR:Q6NUT4 STRING:Q6NUT4 Ensembl:ENSDART00000066722 GeneID:406543
KEGG:dre:406543 InParanoid:Q6NUT4 OMA:MNLSPPP NextBio:20818107
Uniprot:Q6NUT4
Length = 284
Score = 114 (45.2 bits), Expect = 0.00049, P = 0.00049
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 88 SIEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYI 144
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF D+E R A+ L ++ ++V +T
Sbjct: 145 EFADKESVRTAMALDESLFRGRQIKVGAKRT 175
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 119 (46.9 bits), Expect = 0.00052, P = 0.00052
Identities = 40/177 (22%), Positives = 85/177 (48%)
Query: 232 KKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDCRIC 289
K++ ++++ ++ + QR++ + VYV I ++ E+ + F G + +
Sbjct: 103 KQTLAHQQQQLATQRTQVQRQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMS 162
Query: 290 GDPNSVLR--FAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTE 346
DP + FAF+E+ EGA+ AL + G ++G ++V + + P + +
Sbjct: 163 WDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKV--GRPSNMPQAQQVIDEVQ 220
Query: 347 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL-GDYHHSTR-IAFVEF 401
+E + R IY +I +++ D+K FE+ G + +L G H+ + F+E+
Sbjct: 221 EEAKSFNR-IYVASIHPDLSEEDIKSVFEAF-GPILYCKLAQGTSLHTHKGYGFIEY 275
>ASPGD|ASPL0000007134 [details] [associations]
symbol:AN6256 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACD01000107 EMBL:BN001301
GO:GO:0016853 HOGENOM:HOG000276232 eggNOG:NOG331137
OrthoDB:EOG4TJ03G RefSeq:XP_663860.1 ProteinModelPortal:Q5AZM4
STRING:Q5AZM4 EnsemblFungi:CADANIAT00006735 GeneID:2871037
KEGG:ani:AN6256.2 OMA:TAVWEQE Uniprot:Q5AZM4
Length = 153
Score = 104 (41.7 bits), Expect = 0.00056, P = 0.00056
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLR---FAFIEFTDEEGA 309
++ TVYV +DQ V+ + LA FV G+VVD + PNS F ++EF E A
Sbjct: 7 LKCTVYVGGLDQAVSVQTLAEAFVPFGEVVDITLPKPDLPNSNDNHRGFGYVEFDSPEDA 66
Query: 310 RAAL-NLAGTMLGFYPVRVLPSK 331
+ A+ N+ G+ L ++V P+K
Sbjct: 67 KEAIDNMDGSELYGRTIKVAPAK 89
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 94 (38.1 bits), Expect = 0.00057, P = 0.00057
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALNL 315
RT++V +++ +VTEE L LF G V+ +I D + + FAF+ F E A+NL
Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69
Query: 316 A-GTMLGFYPVRV 327
G L P+++
Sbjct: 70 LNGIKLYGRPIKI 82
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 113 (44.8 bits), Expect = 0.00075, P = 0.00075
Identities = 34/147 (23%), Positives = 68/147 (46%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALNLAG 317
+Y+ ++++ + + + F G +++C + D + R + F+ F EE ARAA+
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 318 TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVKLFFE 375
ML + + V F+PR + E+E + +Y N+ ++ T+ ++ FE
Sbjct: 175 GMLC--------NNQKVHVVK--FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFE 224
Query: 376 SVCGEVYRLRLLGDYH-HSTRIAFVEF 401
G + +L+ D S R FV +
Sbjct: 225 PY-GRITSHKLMLDEEGRSRRFGFVAY 250
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 114 (45.2 bits), Expect = 0.00087, P = 0.00087
Identities = 44/179 (24%), Positives = 79/179 (44%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEE 307
++++ ++ +YV D+D VTE+ L F G + RIC DP S L + ++ F
Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70
Query: 308 GARAALNLAG-TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE-REMCARTIYCTNIDKKV 365
A ALN ++ P R++ S+ P +D R+ I+ N+DK +
Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQ----P---------DDRLRKSGVGNIFIKNLDKSI 117
Query: 366 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424
+ F S G + +++ D + S A+V F + A++ H L+N +
Sbjct: 118 DNRALFYLF-SAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 114 (45.2 bits), Expect = 0.00087, P = 0.00087
Identities = 44/179 (24%), Positives = 79/179 (44%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEE 307
++++ ++ +YV D+D VTE+ L F G + RIC DP S L + ++ F
Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70
Query: 308 GARAALNLAG-TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE-REMCARTIYCTNIDKKV 365
A ALN ++ P R++ S+ P +D R+ I+ N+DK +
Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQ----P---------DDRLRKSGVGNIFIKNLDKSI 117
Query: 366 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424
+ F S G + +++ D + S A+V F + A++ H L+N +
Sbjct: 118 DNRALFYLF-SAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 114 (45.2 bits), Expect = 0.00087, P = 0.00087
Identities = 44/179 (24%), Positives = 79/179 (44%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEE 307
++++ ++ +YV D+D VTE+ L F G + RIC DP S L + ++ F
Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70
Query: 308 GARAALNLAG-TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE-REMCARTIYCTNIDKKV 365
A ALN ++ P R++ S+ P +D R+ I+ N+DK +
Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQ----P---------DDHLRKSGVGNIFIKNLDKSI 117
Query: 366 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424
+ F S G + +++ D + S A+V F + A++ H L+N +
Sbjct: 118 DNRALFYLF-SAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 117 (46.2 bits), Expect = 0.00091, P = 0.00091
Identities = 44/164 (26%), Positives = 75/164 (45%)
Query: 243 NSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFI 301
+SR S A+R + ++V ++D+ V + L F GCG +V C++ D R + F+
Sbjct: 122 SSRDSSARRSGV--GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFV 179
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER---EMCARTIYC 358
+F E+ A+ A+ + G +VL K V P FL + E E +M +Y
Sbjct: 180 QFDTEDSAKNAIE---KLNG----KVLNDKQIF--VGP-FLRKEERESAADKMKFTNVYV 229
Query: 359 TNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEF 401
N+ + T ++K F G + ++ D +R FV F
Sbjct: 230 KNLSEATTDDELKTTFGQY-GSISSAVVMRDGDGKSRCFGFVNF 272
>POMBASE|SPBC1861.04c [details] [associations]
symbol:SPBC1861.04c "RNA-binding protein Prp24
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005688 "U6 snRNP" evidence=ISO] [GO:0017069
"snRNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 PomBase:SPBC1861.04c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0000244 GO:GO:0017069 GO:GO:0000245
GO:GO:0005688 OrthoDB:EOG486CNQ InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 OMA:SQAVMKM PIR:T39743 RefSeq:NP_596721.1
HSSP:P49960 ProteinModelPortal:Q9USY2 EnsemblFungi:SPBC1861.04c.1
GeneID:2539617 KEGG:spo:SPBC1861.04c NextBio:20800774
Uniprot:Q9USY2
Length = 1014
Score = 119 (46.9 bits), Expect = 0.00093, P = 0.00093
Identities = 42/130 (32%), Positives = 62/130 (47%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEEGARAALNLAG 317
+YV++ E + LF G VVD R N+ RF +++ + A AL L
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHK 727
Query: 318 TMLGF-YPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 376
+L YP++V S P+ T PR+ E R +Y TNID KV + DV+ FF
Sbjct: 728 KLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVETFFRD 779
Query: 377 VCGEVYRLRL 386
G+V +R+
Sbjct: 780 Y-GQVESVRI 788
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 92 (37.4 bits), Expect = 0.00094, P = 0.00094
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 27 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 86
Query: 301 IEFTDEEGARAALNLAGTML 320
+ F +E A A+ ML
Sbjct: 87 VHFETQEAADKAIEKMNGML 106
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 437 363 0.00083 117 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 57
No. of states in DFA: 611 (65 KB)
Total size of DFA: 237 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.79u 0.12s 28.91t Elapsed: 00:00:02
Total cpu time: 28.80u 0.12s 28.92t Elapsed: 00:00:02
Start: Sat May 11 16:14:01 2013 End: Sat May 11 16:14:03 2013