BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013726
(437 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ AL
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 123
Query: 314 NLAGTMLGFYPVRVLPSKTAI 334
G M G P+++ S AI
Sbjct: 124 AFNGVMFGDRPLKINHSNNAI 144
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV 402
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFA 114
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 255 IRRTVYVSDIDQQVT-EEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ AL
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 126
Query: 314 NLAGTMLGFYPVRVLPSKTAI 334
G M G P+++ S AI
Sbjct: 127 AFNGVMFGDRPLKINHSNNAI 147
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 311 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 370
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 371 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV 402
L F GEV +R+ GD TR AFVEF
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFA 117
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 255 IRRTVYVSDIDQQVT-EEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ AL
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 126
Query: 314 NLAGTMLGFYPVRVLPSKTAI 334
G M G P+++ S AI
Sbjct: 127 AFNGVMFGDRPLKINHSNNAI 147
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 311 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 370
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 38 AALDPNITALGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 371 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV 402
L F GEV +R+ GD TR AFVEF
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFA 117
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 158 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 214
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 215 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 245
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 346 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEF 401
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 160 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEF 216
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 219 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 249
Score = 35.8 bits (81), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 346 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEF 401
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEF 220
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 219 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 249
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 346 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEF 401
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEF 220
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 152 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYI 208
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 209 EFSDKESVRTSLALDESLFRGRQIKVVPKRT 239
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 346 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEF 401
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 154 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFTGHPKGFAYIEF 210
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 153 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYI 209
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF+D+E R +L L ++ ++V+P +T
Sbjct: 210 EFSDKESVRTSLALDESLFRGRQIKVVPKRT 240
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 346 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEF 401
E++ E AR+IY N+D T +++ F CG V R+ +L D + H A++EF
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKYTGHPKGFAYIEF 211
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFIEFTD 305
+E I ++VYV ++D VT E+L + F CG V + C + G P FA+IEF++
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAYIEFSE 105
Query: 306 EEGARAALNLAGTMLGFYPVRVLPSKTAI 334
AL L G+ML P++V P +T +
Sbjct: 106 PSLVPNALLLNGSMLHERPLKVTPKRTNV 134
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 347 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEF 401
D+ + A+++Y N+D VT +++ F S CG V R+ +L D H A++EF
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFAS-CGSVNRVTILCDKFTGHPKGFAYIEF 103
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 153 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYI 209
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF D+E R +L L ++ ++V+P +T
Sbjct: 210 EFCDKESVRTSLALDESLFRGRQIKVVPKRT 240
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 346 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEF 401
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFTGHPKGFAYIEF 211
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEEGARAALNLAG 317
+YV++ E + LF G VVD R N+ RF +++ + A AL L
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHK 727
Query: 318 TML-GFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 376
+L YP++V S P+ T PR+ E R +Y TNID KV + DV+ FF
Sbjct: 728 KLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVETFFRD 779
Query: 377 VCGEVYRLRL 386
G+V +R+
Sbjct: 780 Y-GQVESVRI 788
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 25/168 (14%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLA 316
R +YV++ID +V E+ + F GQV RI N F ++ T + A AL+ A
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA 816
Query: 317 GTMLGFYPVRVLPS-------KTAIAPVNPTFLPRTEDERE-------------MCARTI 356
G LG + V+ S KT ++ + L ++ + E + ++++
Sbjct: 817 GKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSL 876
Query: 357 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMV 404
TN+D V +A ++ FES G++YR+ L H A VEF+ +
Sbjct: 877 GVTNVDGTVNEARLRSLFESY-GKLYRVVL----HPEHEGAVVEFLDI 919
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 227 AAVRRKKSFGQGKRRMNSRTSLAQ---REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV 283
AA+ +K+ GQ + Q REE+ TV V+++ ++E +L F CG +
Sbjct: 560 AALSKKRKPGQEGDVFKKSKPIEQHRNREEL---TVLVTNLPSDISENELKIFFKDCGNI 616
Query: 284 VDCRICGDPNSVLRFAFIEFTDEEGARAA 312
+ I D ++ A IEF++ AA
Sbjct: 617 IRIFILEDNQKDVKVAQIEFSETSEVLAA 645
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 355 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF 401
T+ TN+ +++ ++K+FF+ CG + R+ +L D ++A +EF
Sbjct: 591 TVLVTNLPSDISENELKIFFKD-CGNIIRIFILEDNQKDVKVAQIEF 636
>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Pabp2 PE=3 SV=1
Length = 225
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRI-C----GDPNSVLRFAFI 301
SL +++EI R+VYV ++D + E+L A F GCG + I C G P FA+I
Sbjct: 86 SLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKG---FAYI 142
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF +E AL + T+ ++V+ +T
Sbjct: 143 EFGSKEFVETALAMNETLFRGRQIKVMSKRT 173
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S +++EI +R+VYV ++D T + L A F CG + + C + G P +A+I
Sbjct: 83 SAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYI 139
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 340
EF + AA+ + T+ ++VLP +T + ++ T
Sbjct: 140 EFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISST 178
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 346 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFV 402
E+++E+ R++Y N+D T D++ F S CG + R+ +L D H A++EF
Sbjct: 85 EEKKEIDKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFA 142
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRI-C----GDPNSVLRFAFI 301
SL +++EI R+VYV ++D + E+L A F GCG + I C G P FA+I
Sbjct: 86 SLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKG---FAYI 142
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332
EF +E AL + T+ ++V+ +T
Sbjct: 143 EFGSKEFVETALAMNETLFRGRQIKVMSKRT 173
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALNL 315
+T++V ++ V +EQ+ F G+VVD R + R F +EF E A+ AL L
Sbjct: 449 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFATAEAAKKALEL 508
Query: 316 AGTMLGFYPVR--VLPSKTAIAPV----NPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 369
AG L PVR + + A P N +F + + TI+ D T D
Sbjct: 509 AGHDLMGRPVRLDLARERGAYTPGSGRDNSSF----KKPAQSSGNTIFIKGFD---TSLD 561
Query: 370 VKLFFESV------CGEVYRLRLLGDYH--HSTRIAFVEFV 402
+ S+ CGE+ R+ + DY S +A+++F
Sbjct: 562 IHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFA 602
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S +++EI +R+VYV ++D T + L A F CG + + C + G P +A+I
Sbjct: 83 SAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYI 139
Query: 302 EFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 340
EF + AA+ + T+ ++VLP +T + ++ T
Sbjct: 140 EFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISST 178
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 345 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFV 402
E+++E+ R++Y N+D T D++ F S CG + R+ +L D H A++EF
Sbjct: 84 AEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFA 142
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 314
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 315 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 162
Query: 375 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424
+ G + ++ D + +S FV + A++ H +L++ +
Sbjct: 163 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 212
Score = 32.0 bits (71), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAAL 313
VY+ ++D ++ +++ +F G++ + D R F F+ F+ E A+AA+
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAV 292
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 314
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 315 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 110 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 157
Query: 375 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424
+ G + ++ D + +S FV + A++ H +L++ +
Sbjct: 158 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALN 314
VY+ +IDQ VTEE+ LF G++ + D R F F+ F+ E A+AA++
Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 121 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 180
Query: 300 FIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TIY 357
F+ + E A A+ ML L K + + R EM A +Y
Sbjct: 181 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 233
Query: 358 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEF 401
NID+ VT+ + + FE GE+ L D +R FV F
Sbjct: 234 IKNIDQDVTEEEFRELFEKF-GEITSATLSRDQEGKSRGFGFVNF 277
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 17/167 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEF-TDEEGARAALN 314
++YV ++D VTE L LF G V R+C D + L +A++ + T +G +A
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 315 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
L T++ P R++ S+ R R+ A I+ N+D + + F
Sbjct: 121 LNYTLIKGRPCRIMWSQ------------RDPALRKTGAGNIFIKNLDAAIDNKALHDTF 168
Query: 375 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMVIASSTLFIHTEFYILH 420
+ G + ++ D H +++ FV + A+S H +L+
Sbjct: 169 -AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLN 214
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALN 314
VYV +I+ +VT+E+ LF G+V + D R F F+ FT E A A++
Sbjct: 243 VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVD 299
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 314
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 315 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 109 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 156
Query: 375 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424
+ G + ++ D + +S FV + A++ H +L++ +
Sbjct: 157 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 206
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 16/165 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 120 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 179
Query: 300 FIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TIY 357
F+ + E A A+ ML L K + + R EM A +Y
Sbjct: 180 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 232
Query: 358 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEF 401
N+D+++++ + + FE GE+ L D +R FV +
Sbjct: 233 IKNLDQEISEEEFRQMFEKF-GEITSATLSRDQEGKSRGFGFVNY 276
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALN 314
VY+ ++DQ+++EE+ +F G++ + D R F F+ ++ + A+AA++
Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVD 287
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 17/171 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 314
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 315 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 116 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 375 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424
+ G + ++ D + +S FV + A+ H +L++ +
Sbjct: 164 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKV 213
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEEGARAAL 313
VYV +IDQ TEE+ LF G++ + D S F F+ FT + A AA+
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEF 303
T+ + E + ++YV D+D V+E L +F G V R+C D + L +A++ F
Sbjct: 24 TNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNF 83
Query: 304 TDEEGARAALNLAGTMLGFYPVR 326
D + A+ A+ L F P++
Sbjct: 84 NDHDAAKTAIE----KLNFTPIK 102
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEE 307
+++ I ++V++ ++D T E++ F GCGQ+V I D + + FA+IEF D
Sbjct: 48 EQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSS 107
Query: 308 GARAALNLAGTMLGFYPVRVLPSKTAI 334
AL + G++ P+ V +T I
Sbjct: 108 SIENALVMNGSLFRSRPIVVTAKRTNI 134
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 15/170 (8%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEEGARAALNL 315
++YV ++D VTE L +F G V R+C D L +A++ F ++ AL
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALE- 105
Query: 316 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 375
L + P++ P + + +P R+ A IY N+D + + F
Sbjct: 106 ---ELNYSPIKERPCRIMWSQRDPAL-------RKTGAGNIYIKNLDPAIDNKALHDTF- 154
Query: 376 SVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424
S G++ ++ D + +S FV + ++ + H +L++ +
Sbjct: 155 SAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKV 204
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 314
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 315 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 112 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 159
Query: 375 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424
+ G + ++ D + +S FV + A++ H +L++ +
Sbjct: 160 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 209
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALN 314
+Y+ +ID VTEE+ +F G++ + DP R F F+ ++ E A+AA++
Sbjct: 234 IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVD 290
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 16/165 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 123 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 182
Query: 300 FIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TIY 357
F+ + E A A+ ML L K + + R EM A IY
Sbjct: 183 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFDEMKANFTNIY 235
Query: 358 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEF 401
NID VT+ + + FE GE+ L D +R FV +
Sbjct: 236 IKNIDPDVTEEEFRKIFEQF-GEITSATLSRDPEGKSRGFGFVNY 279
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEF 303
T+ AQ+ ++YV ++D VTE L LF GQV R+C D + L +A++ +
Sbjct: 37 TTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 96
Query: 304 -TDEEGARAALNLAGTMLGFYPVRVL 328
+ E+G +A L T++ P R++
Sbjct: 97 NSSEDGEKALEELNYTVIKGKPCRIM 122
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 24/181 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 120 RIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYG 179
Query: 300 FIEFTDEEGARAAL-NLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRTEDEREMCAR- 354
F+ + E A A+ ++ G +L V V +P K R EM A
Sbjct: 180 FVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKE-----------RMSKFEEMKANF 228
Query: 355 -TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMVIASSTLFI 412
IY NID VT D + FE G++ + D +R FV ++ A++
Sbjct: 229 TNIYVKNIDLDVTDEDFRELFEK-HGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVD 287
Query: 413 H 413
H
Sbjct: 288 H 288
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 314
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 315 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 375 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424
+ G + ++ D + +S FV + A++ H +L++ +
Sbjct: 161 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 210
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 300 FIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TIY 357
F+ + E A A+ ML L K + + R EM A +Y
Sbjct: 184 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 236
Query: 358 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEF 401
NID++VT + + FE GE+ L D +R FV F
Sbjct: 237 IKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNF 280
Score = 38.5 bits (88), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALN 314
VY+ +IDQ+VT+E+ +F G++ + D R F F+ F+ + A+AA++
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 314
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 315 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 375 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424
+ G + ++ D + +S FV + A++ H +L++ +
Sbjct: 161 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 210
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 300 FIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TIY 357
F+ + E A A+ ML L K + + R EM A +Y
Sbjct: 184 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 236
Query: 358 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEF 401
NID++VT + + FE GE+ L D +R FV F
Sbjct: 237 IKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNF 280
Score = 38.5 bits (88), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALN 314
VY+ +IDQ+VT+E+ +F G++ + D R F F+ F+ + A+AA++
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 17/171 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 314
++YV ++D VTE L LF G V R+C D + L +A++ F + E+G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 315 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
L T++ P R++ S+ R R+M ++ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 375 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424
S G++ ++ D ++ FV F V +++ H +L++ +
Sbjct: 189 -SAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALN 314
VY+ ++D ++TE++ + LF G++ + D N R F F+ + + E A+ A++
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVD 319
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNL 315
TV+V ++ TE+ L+ F GCG + R+ DP S + F ++ F+D + A+ + +
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426
Query: 316 AGTMLGFYPVRV 327
G + P R+
Sbjct: 427 NGHFIAGRPCRL 438
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NS 294
Q ++ + S +Q E ++YV D++ V+E L +F G V R+C D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 295 VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR 354
L +A++ F D E R A+ L + P++ + + +P+ R+ +
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPIKGRLCRIMWSQRDPSL-------RKKGSG 126
Query: 355 TIYCTNIDKKVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR-IAFVEF 401
I+ N+ + D K ++ SV G++ ++ D + ++ FV F
Sbjct: 127 NIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHF 173
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAAL 313
+YV +I+ + T+EQ LF G +V + D + L+ F F+ + E A A+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEEGARAALNL 315
++YV D+ Q VTE L F G ++ R+C D L +A++ F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 AG-TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 375 E--SVCGEVYRLRLLGDYHHSTRIAFVEF 401
+ S G + +++ D + S FV F
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHF 145
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 359
+ F +E A A++ + G +L V V F R E E E+ AR T
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 360 NI 361
N+
Sbjct: 192 NV 193
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 27/181 (14%)
Query: 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNH-NA 218
GD D R L+E+F K P S+ ++N GF GF + F H +A
Sbjct: 199 GDDMNDER-LKEMFGKYGPAL------SVKVMTDDNGKSKGF--GFVS-----FERHEDA 244
Query: 219 RNGNVNANAAVRRKKSF--GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQ 267
+ N KS G+ ++++ +T L ++ E +++ +YV ++D
Sbjct: 245 QKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 268 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTD-EEGARAALNLAGTMLGFYPVR 326
+ +E+L F+ G + ++ + F F+ F+ EE +A + G ++ P+
Sbjct: 305 IDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 327 V 327
V
Sbjct: 365 V 365
>sp|Q9CQT2|RBM7_MOUSE RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1 SV=1
Length = 265
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALNL 315
RT++V +++ +VTEE L LF G V+ +I D + L+ FAF+ F E A+NL
Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNL 69
Query: 316 A-GTMLGFYPVRV 327
G L P+++
Sbjct: 70 LNGIKLFGRPIKI 82
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 17/171 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 314
++YV ++D VTE L LF GQV R+C D + L +A++ + D G RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 315 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 103 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 375 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424
+ G + ++ D + S FV + A++ H +L++ +
Sbjct: 151 -AAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 200
Score = 35.4 bits (80), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAAL 313
+Y+ +ID +V +E+ LF G++ + D R F F+ F+ E A+AA+
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T +++ ++DQ + + L F G ++ C++ D N R FA
Sbjct: 118 RIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFA 177
Query: 300 FIEFTDEEGARAALNLAGTML 320
F+ ++ E A AA+ ML
Sbjct: 178 FVHYSTGEAADAAIKAVNGML 198
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARA 311
+ ++YV ++D VTE L +F G V R+C D + L +A++ + + +G RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 312 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 371
+L +++ R++ S+ R R+ I+ N+D+ + +
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQ------------RDPALRKTGQGNIFIKNLDQSIDNKALH 151
Query: 372 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEF 401
F + G++ ++ D + +R AFV +
Sbjct: 152 DTF-AAFGDILSCKVGTDENGKSRGFAFVHY 181
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T +++ ++DQ + + L F G ++ C++ D N R FA
Sbjct: 118 RIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFA 177
Query: 300 FIEFTDEEGARAALNLAGTML 320
F+ ++ E A AA+ ML
Sbjct: 178 FVHYSTGEAADAAIKAVNGML 198
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARA 311
+ ++YV ++D VTE L +F G V R+C D + L +A++ + + +G RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 312 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 371
+L +++ R++ S+ R R+ I+ N+D+ + +
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQ------------RDPALRKTGQGNIFIKNLDQSIDNKALH 151
Query: 372 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEF 401
F + G++ ++ D + +R AFV +
Sbjct: 152 DTF-AAFGDILSCKVGTDENGKSRGFAFVHY 181
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 63/149 (42%), Gaps = 20/149 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGA-RAALNL 315
++Y D+D +VTE L LF VV R+C D N L +A+I F++ A RA L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 316 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 375
T L P+R++ S R R I+ N+D + D K FE
Sbjct: 110 NYTPLFDRPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASI---DNKALFE 154
Query: 376 --SVCGEVYRLRLLGDYH-HSTRIAFVEF 401
S G + ++ D S FV+F
Sbjct: 155 TFSSFGTILSCKVAMDVTGRSKGYGFVQF 183
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEEGA 309
EE RRTV+VS + ++T +L F G V D +I D S A++EF E+
Sbjct: 235 EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSV 294
Query: 310 RAALNLAGTMLGFYPVRV 327
+AA+ L+G L PV V
Sbjct: 295 QAAIALSGKRLLGLPVIV 312
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 355
+ F +E A A++ + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 356 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEF 401
+Y N + + +K +F G ++++ D H +R FV F
Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQY-GAALSVKVMTDDHGKSRGFGFVSF 238
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 20/149 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEEGARAALNL 315
++YV D+ VTE L F G ++ R+C D L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 AG-TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 375 E--SVCGEVYRLRLLGDYHHSTRIAFVEF 401
+ S G + +++ D + S FV F
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHF 145
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 20/168 (11%)
Query: 245 RTSLAQREEIIRR----TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R ++R+ IR+ +++ ++ + + L F G+V+ C++ D N R F
Sbjct: 122 RIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFG 181
Query: 300 FIEFTDEEGARAALNLAGTM----LGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART 355
F+ F +E A+ A+ M L Y +P K I+ + +E +
Sbjct: 182 FVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKL---------EEAKANFTN 232
Query: 356 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFV 402
IY NID + T + + F S GE+ L D + FV FV
Sbjct: 233 IYVKNIDVETTDEEFEQLF-SQYGEIVSAALEKDAEGKPKGFGFVNFV 279
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 29/188 (15%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTD-EEGARAALN 314
++YV ++D +TE L +F G + R+C D + L +A++ +TD E G +A
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 315 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
L + P R++ S+ R R+ + I+ N+ + + F
Sbjct: 111 LNYAEINGRPCRIMWSE------------RDPAIRKKGSGNIFIKNLHPAIDNKALHETF 158
Query: 375 ESVCGEVYRLRLLGDYHHSTR-IAFVEF--------VMVIASSTLFIHTEFYI-LHNPS- 423
S GEV ++ D + ++R FV F + + L E Y+ +H P
Sbjct: 159 -STFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKK 217
Query: 424 --IAWLEE 429
I+ LEE
Sbjct: 218 DRISKLEE 225
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAAL 313
+YV +ID + T+E+ LF G++V + D + F F+ F D A A+
Sbjct: 233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAV 288
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +RR+ V++ ++D+ + + + F G ++ C++ D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 300 FIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 355
F+ F EE A +++ ML +V K F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGML-LNGKKVYVGK---------FIPRKEREKELGEKAKLFT 183
Query: 356 -IYCTNIDKKVTQADVKLFFE 375
+Y N + +K FFE
Sbjct: 184 NVYVKNFTEDFDDEKLKEFFE 204
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 15/155 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEEGARAALNL 315
++YV D+ Q V E L F G V+ R+C D L +A++ F A AL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD- 61
Query: 316 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 375
+ F VR P + + +P+ R ++ N+D+ + + F
Sbjct: 62 ---TMNFDLVRNKPIRIMWSQRDPSL-------RRSGVGNVFIKNLDRAIDNKAIYDTF- 110
Query: 376 SVCGEVYRLRLLGDYHHSTR-IAFVEFVMVIASST 409
S G + ++ D +++ FV F A++T
Sbjct: 111 SAFGNILSCKVATDEKGNSKGYGFVHFETEEAANT 145
>sp|Q99181|HSH49_YEAST Protein HSH49 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HSH49 PE=1 SV=1
Length = 213
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEFTDEEGARAAL 313
TVYV +ID ++T+EQL LF+ V+ RI + VL+ +AFIEF ++ A+ A+
Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVL--RIKYPKDKVLQAYQGYAFIEFYNQGDAQYAI 67
Query: 314 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 373
+ + Y R++ + T LP +NI K + KLF
Sbjct: 68 KIMNNTVRLYD-RLIKVRQVTNSTGTTNLP---------------SNISKDMILPIAKLF 111
Query: 374 FESVCGEV 381
+++ +
Sbjct: 112 IKNLADSI 119
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEEGARAALNL 315
++YV D+ VTE L F G V+ R+C D L +A++ F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 AG-TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 375 E--SVCGEVYRLRLLGDYHHSTRIAFVEF 401
+ S G + +++ D + S AFV F
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHF 145
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 23/168 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 355
+ F +E A A+ + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 356 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEF 401
+Y N ++V +K F S G+ ++++ D + ++ FV +
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSY 238
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAAL 313
VY+ + ++V +E L LF G+ + ++ DPN + F F+ + E A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNL 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 316 AG-TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
++ P+R++ S+ R R+ ++ N+D+ + D K +
Sbjct: 72 MNFEVIKGRPIRIMWSQ------------RDPGLRKSGVGNVFIKNLDESI---DNKALY 116
Query: 375 E--SVCGEVYRLRLLGDYHHSTRIAFVEF 401
+ S G + +++ D H S FV F
Sbjct: 117 DTFSAFGNILSCKVVCDEHGSRGYGFVHF 145
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNL 315
++Y+ D+ VTE L F G ++ R+C D + L +A+I F A AL+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 316 AG-TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
++ P+R++ S+ R R+ ++ N+D+ + D K +
Sbjct: 72 MNFEVIKGRPIRIMWSQ------------RDPGLRKSGVGNVFIKNLDESI---DNKALY 116
Query: 375 E--SVCGEVYRLRLLGDYHHSTRIAFVEF 401
+ S G + +++ D H S FV F
Sbjct: 117 DTFSAFGNILSCKVVCDEHGSRGYGFVHF 145
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 236 GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ ++R+ ++ L ++ E I++ +YV ++D + +++L F+ G +
Sbjct: 264 GRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSA 323
Query: 287 RICGDPNSVLRFAFIEFTD-EEGARAALNLAGTMLGFYPVRV 327
++ + F F+ F+ EE +A + G ++ P+ V
Sbjct: 324 KVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>sp|Q09301|YQOC_CAEEL Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans
GN=EEED8.12 PE=4 SV=1
Length = 197
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEE 307
+++ I ++V++ ++D T E++ F GCG +V I D + + FA+IEF D
Sbjct: 54 EQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSS 113
Query: 308 GARAALNLAGTMLGFYPVRVLPSKTAI 334
AL + G++ P+ V +T I
Sbjct: 114 SIENALVMNGSLFRSRPIVVTAKRTNI 140
>sp|Q9Y580|RBM7_HUMAN RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1
Length = 266
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALNL 315
RT++V +++ +VTEE L LF G V+ +I D + + FAF+ F E A+NL
Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69
Query: 316 A-GTMLGFYPVRV-LPSKTAIAP 336
G L P+++ S ++ AP
Sbjct: 70 LNGIKLYGRPIKIQFRSGSSHAP 92
>sp|Q3MHY8|RBM7_BOVIN RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1
Length = 262
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALNL 315
RT++V +++ +VTEE L LF G V+ +I D + + FAF+ F E A+NL
Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69
Query: 316 A-GTMLGFYPVRV 327
G L P+++
Sbjct: 70 LNGIKLFGRPIKI 82
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 21/169 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D N + +
Sbjct: 133 RIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYG 192
Query: 300 FIEF-TDEEGARAALNLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRTEDEREMCART 355
F+ + TDE ++A ++ G +L V V +P K + DE +
Sbjct: 193 FVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF---------DEMKANFTN 243
Query: 356 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFV 402
IY NI+ +VT + + FE G+V L D S FV F
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKY-GDVTSSSLARDQETGKSRGFGFVNFT 291
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 17/167 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEF-TDEEGARAALN 314
++YV ++D VTE L LF G V R+C D + L +A++ + T +G +A
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 315 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 122 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDVAIDNKALHDTF 169
Query: 375 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMVIASSTLFIHTEFYILH 420
+ G + ++ D + +++ FV + A+S H +L+
Sbjct: 170 -AAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLN 215
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDE 306
+EEI R+VYV ++D + T +Q+ A F CG V I D + ++EF ++
Sbjct: 93 TDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNK 152
Query: 307 EGARAALNLAGTMLGFYPVRVLPSKTAIA 335
E A+ L + +++ P +T +
Sbjct: 153 ESIINAMALNDSFFNERQLKITPKRTNLP 181
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 347 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFV 402
D+ E+ +R++Y N+D K T + +F+S CG V R+ +L D H +VEFV
Sbjct: 94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQS-CGTVNRITILSDKTTGHPKGCCYVEFV 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,017,428
Number of Sequences: 539616
Number of extensions: 6560908
Number of successful extensions: 47276
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 413
Number of HSP's that attempted gapping in prelim test: 28701
Number of HSP's gapped (non-prelim): 11879
length of query: 437
length of database: 191,569,459
effective HSP length: 120
effective length of query: 317
effective length of database: 126,815,539
effective search space: 40200525863
effective search space used: 40200525863
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)