Query 013726
Match_columns 437
No_of_seqs 423 out of 1934
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 06:46:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0110 RNA-binding protein (R 100.0 3.7E-38 8.1E-43 330.1 15.1 318 104-429 322-692 (725)
2 TIGR01659 sex-lethal sex-letha 99.9 1.6E-26 3.4E-31 234.6 22.0 164 252-430 103-275 (346)
3 TIGR01645 half-pint poly-U bin 99.9 1E-24 2.3E-29 233.2 18.7 169 254-426 105-278 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.4E-24 3.1E-29 219.5 18.8 150 255-419 2-156 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 9E-25 2E-29 220.9 17.0 168 255-423 88-340 (352)
6 TIGR01622 SF-CC1 splicing fact 99.9 9.4E-24 2E-28 221.2 20.2 175 252-429 85-265 (457)
7 TIGR01628 PABP-1234 polyadenyl 99.9 9.3E-24 2E-28 227.2 17.9 152 258-422 2-157 (562)
8 KOG0148 Apoptosis-promoting RN 99.9 5.1E-23 1.1E-27 196.0 14.2 160 257-421 63-227 (321)
9 TIGR01628 PABP-1234 polyadenyl 99.9 1.8E-22 4E-27 217.2 19.8 174 254-428 176-362 (562)
10 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.7E-21 3.8E-26 206.6 19.4 164 253-421 172-364 (509)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.4E-21 5.3E-26 205.1 20.2 165 254-422 273-464 (481)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.7E-21 1.7E-25 201.7 22.1 170 254-424 293-494 (509)
13 KOG0131 Splicing factor 3b, su 99.9 1E-21 2.3E-26 177.8 10.6 157 255-425 8-170 (203)
14 KOG0117 Heterogeneous nuclear 99.9 3E-21 6.4E-26 194.4 14.3 157 255-432 82-250 (506)
15 KOG0144 RNA-binding protein CU 99.9 1.2E-21 2.5E-26 196.5 10.6 152 251-416 29-187 (510)
16 KOG0145 RNA-binding protein EL 99.9 3.3E-21 7.2E-26 182.7 12.1 149 253-416 38-191 (360)
17 TIGR01648 hnRNP-R-Q heterogene 99.9 6.3E-21 1.4E-25 203.8 15.6 156 254-429 56-221 (578)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2E-20 4.2E-25 198.2 19.2 155 256-419 2-159 (481)
19 KOG0127 Nucleolar protein fibr 99.8 9.2E-20 2E-24 187.2 20.9 159 255-414 116-354 (678)
20 KOG0123 Polyadenylate-binding 99.8 1.4E-19 3.1E-24 185.0 14.4 143 257-424 2-145 (369)
21 TIGR01648 hnRNP-R-Q heterogene 99.8 6.4E-19 1.4E-23 188.5 19.8 160 255-430 137-307 (578)
22 KOG0127 Nucleolar protein fibr 99.8 2.2E-19 4.8E-24 184.4 14.1 171 256-427 5-193 (678)
23 TIGR01622 SF-CC1 splicing fact 99.8 1.9E-18 4.2E-23 181.1 20.9 166 256-424 186-440 (457)
24 KOG0124 Polypyrimidine tract-b 99.8 2.3E-19 5.1E-24 176.7 10.0 162 255-420 112-278 (544)
25 KOG0117 Heterogeneous nuclear 99.8 4.1E-18 8.9E-23 171.9 14.4 154 253-422 161-321 (506)
26 KOG0123 Polyadenylate-binding 99.8 5.4E-18 1.2E-22 173.5 13.3 155 258-420 78-234 (369)
27 KOG0145 RNA-binding protein EL 99.8 7.4E-18 1.6E-22 160.1 12.8 171 254-425 125-351 (360)
28 KOG0109 RNA-binding protein LA 99.7 7.3E-18 1.6E-22 162.3 8.8 126 257-411 3-129 (346)
29 KOG0147 Transcriptional coacti 99.7 9.7E-18 2.1E-22 173.1 5.7 173 250-424 173-350 (549)
30 KOG4205 RNA-binding protein mu 99.6 4.7E-16 1E-20 155.0 8.8 153 255-416 5-161 (311)
31 TIGR01645 half-pint poly-U bin 99.6 2.4E-14 5.3E-19 153.8 21.5 77 255-331 203-282 (612)
32 KOG0148 Apoptosis-promoting RN 99.6 3E-15 6.5E-20 143.2 10.2 131 253-425 3-135 (321)
33 KOG0144 RNA-binding protein CU 99.6 2.5E-15 5.4E-20 151.3 8.5 79 254-332 122-205 (510)
34 KOG0105 Alternative splicing f 99.6 3E-14 6.5E-19 129.8 13.6 152 255-413 5-169 (241)
35 KOG4211 Splicing factor hnRNP- 99.6 4.7E-14 1E-18 144.5 14.7 160 255-421 9-172 (510)
36 PLN03134 glycine-rich RNA-bind 99.5 1.4E-13 3.1E-18 123.5 11.5 79 254-332 32-113 (144)
37 KOG4206 Spliceosomal protein s 99.5 6.3E-13 1.4E-17 124.9 13.6 155 257-416 10-205 (221)
38 KOG0146 RNA-binding protein ET 99.5 5E-13 1.1E-17 127.9 12.9 167 254-421 17-354 (371)
39 PF00076 RRM_1: RNA recognitio 99.4 5.8E-13 1.3E-17 102.6 8.7 68 259-326 1-70 (70)
40 KOG4212 RNA-binding protein hn 99.4 1.4E-11 3.1E-16 124.5 17.0 160 255-415 43-277 (608)
41 COG0724 RNA-binding proteins ( 99.4 8.7E-12 1.9E-16 117.7 14.2 155 256-411 115-284 (306)
42 TIGR01659 sex-lethal sex-letha 99.4 1.6E-12 3.4E-17 132.5 9.0 78 255-332 192-274 (346)
43 PLN03120 nucleic acid binding 99.4 3.9E-12 8.4E-17 123.3 10.7 77 255-332 3-79 (260)
44 KOG0121 Nuclear cap-binding pr 99.4 1.5E-12 3.3E-17 112.4 7.0 81 250-330 30-113 (153)
45 KOG1457 RNA binding protein (c 99.3 2.5E-11 5.4E-16 113.8 14.8 164 253-419 31-273 (284)
46 KOG1548 Transcription elongati 99.3 8.1E-11 1.8E-15 116.3 16.6 165 251-418 129-338 (382)
47 PF14259 RRM_6: RNA recognitio 99.3 1.2E-11 2.6E-16 96.2 8.6 68 259-326 1-70 (70)
48 PLN03134 glycine-rich RNA-bind 99.3 1.3E-11 2.8E-16 110.9 9.0 77 352-429 33-113 (144)
49 PLN03213 repressor of silencin 99.3 3.5E-12 7.5E-17 130.5 5.9 77 253-331 7-86 (759)
50 PF00076 RRM_1: RNA recognitio 99.3 1.3E-11 2.8E-16 95.0 7.8 68 356-424 1-69 (70)
51 KOG0110 RNA-binding protein (R 99.3 2.2E-11 4.7E-16 129.5 11.3 158 252-415 381-581 (725)
52 smart00362 RRM_2 RNA recogniti 99.3 3.7E-11 8E-16 91.2 9.0 71 258-328 1-72 (72)
53 KOG0125 Ataxin 2-binding prote 99.2 4.7E-11 1E-15 117.3 11.3 79 254-332 94-173 (376)
54 KOG0147 Transcriptional coacti 99.2 2.5E-11 5.5E-16 126.0 9.9 158 259-420 281-516 (549)
55 PLN03121 nucleic acid binding 99.2 3.9E-11 8.5E-16 114.8 10.4 78 255-333 4-81 (243)
56 KOG0106 Alternative splicing f 99.2 1.6E-11 3.5E-16 116.2 6.9 152 257-421 2-160 (216)
57 KOG0107 Alternative splicing f 99.2 2E-11 4.3E-16 110.7 7.0 74 255-331 9-83 (195)
58 KOG0122 Translation initiation 99.2 5.3E-11 1.1E-15 113.0 8.7 77 255-331 188-267 (270)
59 KOG0149 Predicted RNA-binding 99.2 3.3E-11 7.3E-16 113.8 7.0 77 255-331 11-89 (247)
60 KOG0124 Polypyrimidine tract-b 99.2 8.3E-10 1.8E-14 109.8 15.7 78 254-331 208-288 (544)
61 PF14259 RRM_6: RNA recognitio 99.1 2.2E-10 4.8E-15 89.0 8.0 65 356-421 1-66 (70)
62 cd00590 RRM RRM (RNA recogniti 99.1 6.6E-10 1.4E-14 84.7 9.4 72 258-329 1-74 (74)
63 smart00360 RRM RNA recognition 99.1 5.1E-10 1.1E-14 84.4 7.9 68 261-328 1-71 (71)
64 PLN03120 nucleic acid binding 99.1 3.2E-10 7E-15 110.0 8.3 76 353-430 4-80 (260)
65 KOG4207 Predicted splicing fac 99.1 2.1E-10 4.6E-15 106.5 6.3 79 255-333 12-93 (256)
66 KOG0114 Predicted RNA-binding 99.1 5.1E-10 1.1E-14 93.6 7.8 78 253-331 15-93 (124)
67 KOG1190 Polypyrimidine tract-b 99.0 3.9E-09 8.4E-14 106.5 14.7 155 256-417 297-475 (492)
68 KOG0113 U1 small nuclear ribon 99.0 8.5E-10 1.8E-14 107.4 8.5 79 253-331 98-179 (335)
69 KOG0129 Predicted RNA-binding 99.0 4.7E-09 1E-13 108.7 13.8 165 251-421 254-440 (520)
70 KOG0120 Splicing factor U2AF, 99.0 8.5E-10 1.8E-14 115.7 7.9 171 253-424 286-484 (500)
71 KOG0122 Translation initiation 99.0 6.3E-10 1.4E-14 105.7 6.1 76 352-428 188-267 (270)
72 KOG0149 Predicted RNA-binding 99.0 1.1E-09 2.3E-14 103.8 7.5 70 352-422 11-82 (247)
73 KOG0126 Predicted RNA-binding 99.0 1E-10 2.2E-15 106.7 -0.3 79 254-332 33-114 (219)
74 smart00362 RRM_2 RNA recogniti 99.0 3E-09 6.6E-14 80.5 7.9 66 355-421 1-66 (72)
75 PLN03121 nucleic acid binding 98.9 3.2E-09 6.9E-14 101.8 9.0 70 352-423 4-73 (243)
76 KOG1456 Heterogeneous nuclear 98.9 1.4E-07 3E-12 94.5 20.7 166 253-422 284-475 (494)
77 KOG0108 mRNA cleavage and poly 98.9 2.1E-09 4.6E-14 111.9 7.3 75 257-331 19-96 (435)
78 KOG0121 Nuclear cap-binding pr 98.9 2.2E-09 4.8E-14 93.0 6.2 74 350-424 33-108 (153)
79 KOG1365 RNA-binding protein Fu 98.9 2.1E-09 4.6E-14 107.5 6.2 161 256-416 161-346 (508)
80 KOG0125 Ataxin 2-binding prote 98.9 2.2E-09 4.8E-14 105.7 5.7 70 350-420 93-162 (376)
81 KOG0130 RNA-binding protein RB 98.9 3.1E-09 6.7E-14 92.8 6.0 75 257-331 73-150 (170)
82 KOG0111 Cyclophilin-type pepti 98.9 2E-09 4.4E-14 100.9 5.0 80 254-333 8-90 (298)
83 KOG4454 RNA binding protein (R 98.9 4.3E-10 9.4E-15 105.3 0.4 153 254-434 7-165 (267)
84 PF13893 RRM_5: RNA recognitio 98.9 7.8E-09 1.7E-13 77.3 7.0 55 273-330 1-56 (56)
85 KOG0114 Predicted RNA-binding 98.8 1.3E-08 2.8E-13 85.3 7.4 68 352-421 17-84 (124)
86 KOG0120 Splicing factor U2AF, 98.8 1.5E-08 3.3E-13 106.4 9.6 163 255-422 174-359 (500)
87 smart00360 RRM RNA recognition 98.8 2.1E-08 4.5E-13 75.5 7.0 61 358-419 1-63 (71)
88 smart00361 RRM_1 RNA recogniti 98.8 3.4E-08 7.3E-13 77.6 7.8 58 270-327 2-69 (70)
89 cd00590 RRM RRM (RNA recogniti 98.8 4.1E-08 8.8E-13 74.7 8.1 66 355-421 1-67 (74)
90 KOG0113 U1 small nuclear ribon 98.7 2.8E-08 6E-13 97.0 7.6 70 351-421 99-170 (335)
91 COG0724 RNA-binding proteins ( 98.7 4.2E-08 9E-13 92.5 8.4 68 353-421 115-184 (306)
92 PLN03213 repressor of silencin 98.7 6.5E-08 1.4E-12 99.7 8.9 62 351-415 8-71 (759)
93 KOG4211 Splicing factor hnRNP- 98.7 2E-07 4.3E-12 96.4 11.9 165 255-421 102-348 (510)
94 KOG0146 RNA-binding protein ET 98.6 3E-08 6.4E-13 95.5 5.0 81 251-331 280-363 (371)
95 KOG1456 Heterogeneous nuclear 98.6 4.2E-07 9E-12 91.1 13.1 149 253-416 28-181 (494)
96 KOG0131 Splicing factor 3b, su 98.6 3.1E-08 6.6E-13 90.7 4.6 71 353-424 9-81 (203)
97 KOG0415 Predicted peptidyl pro 98.6 8.6E-08 1.9E-12 95.4 6.5 77 255-331 238-317 (479)
98 KOG0153 Predicted RNA-binding 98.6 1.5E-07 3.2E-12 93.7 7.9 78 251-332 223-302 (377)
99 KOG0109 RNA-binding protein LA 98.5 8.6E-08 1.9E-12 93.3 5.1 74 254-333 76-150 (346)
100 KOG0132 RNA polymerase II C-te 98.5 2.3E-07 5E-12 100.1 8.1 74 254-331 419-493 (894)
101 KOG0126 Predicted RNA-binding 98.5 1.5E-08 3.2E-13 92.7 -0.8 68 353-421 35-104 (219)
102 KOG0130 RNA-binding protein RB 98.5 1.4E-07 3E-12 82.7 4.9 77 350-427 69-149 (170)
103 KOG0128 RNA-binding protein SA 98.5 1E-08 2.2E-13 111.4 -2.7 136 255-421 666-804 (881)
104 KOG4210 Nuclear localization s 98.5 1.7E-07 3.6E-12 93.3 5.0 170 254-428 86-262 (285)
105 KOG4208 Nucleolar RNA-binding 98.4 4.7E-07 1E-11 84.5 7.2 78 253-330 46-127 (214)
106 KOG4207 Predicted splicing fac 98.4 3.4E-07 7.3E-12 85.4 5.8 69 352-421 12-82 (256)
107 KOG0107 Alternative splicing f 98.4 4E-07 8.6E-12 83.0 6.0 57 353-413 10-66 (195)
108 KOG1365 RNA-binding protein Fu 98.4 2E-06 4.3E-11 86.6 11.4 158 255-421 59-233 (508)
109 KOG4205 RNA-binding protein mu 98.4 1.1E-06 2.5E-11 88.0 9.7 77 255-331 96-174 (311)
110 KOG1190 Polypyrimidine tract-b 98.4 4.5E-07 9.8E-12 91.8 5.7 157 254-417 26-214 (492)
111 KOG4208 Nucleolar RNA-binding 98.4 7.1E-07 1.5E-11 83.3 6.5 70 352-421 48-119 (214)
112 KOG4212 RNA-binding protein hn 98.4 5.3E-07 1.1E-11 91.9 6.0 77 353-429 44-121 (608)
113 KOG0105 Alternative splicing f 98.4 4.9E-07 1.1E-11 83.1 5.1 64 352-417 5-68 (241)
114 KOG0108 mRNA cleavage and poly 98.4 5.9E-07 1.3E-11 93.8 6.4 76 354-430 19-98 (435)
115 KOG0226 RNA-binding proteins [ 98.3 3.9E-06 8.5E-11 80.6 11.3 157 259-424 99-262 (290)
116 smart00361 RRM_1 RNA recogniti 98.3 1.2E-06 2.5E-11 68.8 6.5 53 367-420 2-63 (70)
117 KOG0112 Large RNA-binding prot 98.3 6.4E-07 1.4E-11 98.1 6.5 152 250-422 366-519 (975)
118 KOG0111 Cyclophilin-type pepti 98.3 3.1E-07 6.7E-12 86.4 3.0 64 352-416 9-74 (298)
119 KOG4661 Hsp27-ERE-TATA-binding 98.3 1.9E-06 4E-11 90.3 7.6 82 253-334 402-486 (940)
120 KOG4209 Splicing factor RNPS1, 98.3 1.6E-06 3.6E-11 83.7 6.5 86 251-336 96-183 (231)
121 KOG0116 RasGAP SH3 binding pro 98.2 2.3E-06 4.9E-11 89.0 7.0 78 255-332 287-366 (419)
122 KOG0151 Predicted splicing reg 98.2 8.9E-06 1.9E-10 87.3 9.9 81 253-333 171-257 (877)
123 KOG0533 RRM motif-containing p 98.1 7.1E-06 1.5E-10 79.5 7.3 79 253-331 80-160 (243)
124 PF13893 RRM_5: RNA recognitio 98.1 7.7E-06 1.7E-10 60.9 5.7 48 370-421 1-48 (56)
125 KOG4660 Protein Mei2, essentia 98.0 3.9E-06 8.4E-11 88.1 3.7 72 252-326 71-143 (549)
126 PF04059 RRM_2: RNA recognitio 98.0 3.4E-05 7.3E-10 64.8 8.2 76 256-331 1-85 (97)
127 KOG0132 RNA polymerase II C-te 98.0 8.3E-06 1.8E-10 88.3 5.5 77 350-431 418-496 (894)
128 KOG4206 Spliceosomal protein s 98.0 1.8E-05 4E-10 74.9 7.0 74 354-429 10-89 (221)
129 KOG4307 RNA binding protein RB 97.9 4.6E-05 1E-09 81.8 10.5 166 254-421 309-504 (944)
130 KOG0415 Predicted peptidyl pro 97.9 1.2E-05 2.5E-10 80.5 5.6 69 352-421 238-308 (479)
131 KOG0226 RNA-binding proteins [ 97.9 1.3E-05 2.8E-10 77.1 4.1 79 252-330 186-267 (290)
132 PF04059 RRM_2: RNA recognitio 97.9 6.5E-05 1.4E-09 63.1 7.8 64 354-417 2-68 (97)
133 KOG4676 Splicing factor, argin 97.7 2.1E-05 4.6E-10 79.5 2.6 157 257-416 8-211 (479)
134 KOG0153 Predicted RNA-binding 97.7 5.9E-05 1.3E-09 75.4 5.6 75 352-431 227-304 (377)
135 KOG4209 Splicing factor RNPS1, 97.7 6.1E-05 1.3E-09 72.9 5.3 65 350-415 98-164 (231)
136 KOG0116 RasGAP SH3 binding pro 97.5 9.9E-05 2.1E-09 77.0 5.5 67 354-421 289-357 (419)
137 KOG0533 RRM motif-containing p 97.5 0.00021 4.6E-09 69.4 6.6 67 352-419 82-149 (243)
138 KOG4661 Hsp27-ERE-TATA-binding 97.3 0.00042 9.2E-09 73.1 6.0 75 350-425 402-478 (940)
139 KOG0128 RNA-binding protein SA 97.2 2.8E-05 6.1E-10 85.2 -3.1 158 255-417 570-732 (881)
140 KOG1457 RNA binding protein (c 97.2 0.00029 6.3E-09 66.8 4.0 64 255-320 209-273 (284)
141 PF08777 RRM_3: RNA binding mo 97.2 0.00092 2E-08 56.9 6.5 57 354-415 2-58 (105)
142 PF11608 Limkain-b1: Limkain b 97.2 0.00072 1.6E-08 55.0 5.3 67 257-331 3-75 (90)
143 KOG4660 Protein Mei2, essentia 97.1 0.00067 1.4E-08 71.7 5.9 65 347-415 69-133 (549)
144 KOG0106 Alternative splicing f 97.1 0.0012 2.6E-08 63.1 7.0 71 253-329 96-167 (216)
145 KOG2193 IGF-II mRNA-binding pr 97.1 7.3E-05 1.6E-09 76.4 -1.8 137 258-419 3-144 (584)
146 KOG4454 RNA binding protein (R 97.0 0.00042 9.1E-09 65.6 2.3 67 353-421 9-76 (267)
147 KOG4307 RNA binding protein RB 96.8 0.021 4.5E-07 62.1 13.8 73 256-328 867-942 (944)
148 KOG4676 Splicing factor, argin 96.8 0.00049 1.1E-08 69.9 1.6 69 251-321 146-214 (479)
149 KOG0151 Predicted splicing reg 96.8 0.0018 4E-08 70.1 5.5 79 350-429 171-256 (877)
150 PF08777 RRM_3: RNA binding mo 96.7 0.0041 8.9E-08 53.0 6.5 54 257-314 2-55 (105)
151 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0062 1.3E-07 45.4 5.9 52 354-411 2-53 (53)
152 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0066 1.4E-07 45.2 6.0 52 257-313 2-53 (53)
153 KOG1548 Transcription elongati 96.4 0.0073 1.6E-07 60.8 6.4 83 352-435 133-227 (382)
154 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.023 5.1E-07 48.0 8.5 75 255-330 5-89 (100)
155 KOG1995 Conserved Zn-finger pr 96.3 0.0041 9E-08 62.8 4.1 79 253-331 63-152 (351)
156 KOG0129 Predicted RNA-binding 96.1 0.02 4.3E-07 60.4 8.2 62 253-314 367-431 (520)
157 KOG1855 Predicted RNA-binding 96.0 0.0084 1.8E-07 61.8 4.6 66 251-316 226-307 (484)
158 COG5175 MOT2 Transcriptional r 95.9 0.016 3.4E-07 58.3 6.1 75 257-331 115-201 (480)
159 KOG4210 Nuclear localization s 95.9 0.0046 1E-07 61.7 2.3 77 255-331 183-262 (285)
160 PF08952 DUF1866: Domain of un 95.8 0.024 5.1E-07 51.0 6.3 55 271-331 51-105 (146)
161 KOG3152 TBP-binding protein, a 95.7 0.0054 1.2E-07 59.4 1.8 70 255-324 73-157 (278)
162 KOG1855 Predicted RNA-binding 95.6 0.022 4.8E-07 58.8 6.2 64 350-414 228-306 (484)
163 KOG2314 Translation initiation 95.6 0.031 6.7E-07 59.6 7.1 76 254-329 56-140 (698)
164 KOG0115 RNA-binding protein p5 95.2 0.03 6.5E-07 54.4 5.1 84 308-413 6-91 (275)
165 KOG4849 mRNA cleavage factor I 95.2 0.018 3.9E-07 58.0 3.7 73 256-328 80-157 (498)
166 KOG2314 Translation initiation 94.6 0.058 1.3E-06 57.5 5.7 68 352-420 57-131 (698)
167 PF11608 Limkain-b1: Limkain b 94.4 0.19 4.1E-06 41.2 7.0 54 354-416 3-61 (90)
168 KOG1995 Conserved Zn-finger pr 94.2 0.065 1.4E-06 54.3 4.9 79 352-431 65-155 (351)
169 KOG2253 U1 snRNP complex, subu 93.8 0.07 1.5E-06 57.9 4.4 108 255-375 39-157 (668)
170 KOG1996 mRNA splicing factor [ 93.4 0.2 4.3E-06 49.7 6.6 60 271-330 301-364 (378)
171 PF05172 Nup35_RRM: Nup53/35/4 93.3 0.44 9.5E-06 40.3 7.7 67 353-421 6-81 (100)
172 KOG2202 U2 snRNP splicing fact 93.3 0.038 8.2E-07 53.7 1.3 60 271-330 83-145 (260)
173 PF10309 DUF2414: Protein of u 92.8 0.63 1.4E-05 35.9 7.2 55 353-413 5-61 (62)
174 KOG2591 c-Mpl binding protein, 92.6 0.64 1.4E-05 49.8 9.2 83 305-412 146-230 (684)
175 PF08675 RNA_bind: RNA binding 91.9 0.69 1.5E-05 37.8 6.7 53 257-316 10-63 (87)
176 KOG0112 Large RNA-binding prot 91.7 0.49 1.1E-05 53.3 7.5 74 254-331 453-529 (975)
177 KOG4849 mRNA cleavage factor I 91.6 0.17 3.6E-06 51.3 3.4 66 353-419 80-149 (498)
178 KOG2135 Proteins containing th 91.4 0.13 2.8E-06 54.0 2.6 76 253-332 369-445 (526)
179 PF10309 DUF2414: Protein of u 91.4 0.93 2E-05 35.0 6.7 52 257-314 6-60 (62)
180 COG5175 MOT2 Transcriptional r 91.4 0.26 5.6E-06 49.7 4.6 68 353-421 114-192 (480)
181 PF07292 NID: Nmi/IFP 35 domai 90.3 0.32 6.9E-06 40.2 3.4 72 299-375 1-74 (88)
182 KOG3152 TBP-binding protein, a 90.1 0.27 5.9E-06 47.9 3.3 58 352-410 73-144 (278)
183 PF07576 BRAP2: BRCA1-associat 89.8 2.3 5.1E-05 36.5 8.5 66 257-322 13-81 (110)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 89.5 0.56 1.2E-05 43.6 4.8 68 255-322 6-82 (176)
185 PF03467 Smg4_UPF3: Smg-4/UPF3 89.4 0.65 1.4E-05 43.2 5.2 68 353-420 7-81 (176)
186 KOG0115 RNA-binding protein p5 89.4 0.36 7.9E-06 47.1 3.5 73 257-329 32-110 (275)
187 PF15023 DUF4523: Protein of u 87.6 2.9 6.2E-05 37.7 7.7 73 253-331 83-160 (166)
188 PF08675 RNA_bind: RNA binding 87.6 2.6 5.6E-05 34.6 6.8 60 354-421 10-72 (87)
189 KOG2416 Acinus (induces apopto 87.4 0.41 8.9E-06 51.6 2.7 74 253-330 441-519 (718)
190 KOG4285 Mitotic phosphoprotein 86.5 2.6 5.6E-05 42.2 7.5 69 256-329 197-266 (350)
191 KOG2416 Acinus (induces apopto 86.1 0.39 8.4E-06 51.8 1.8 63 350-416 441-503 (718)
192 KOG2591 c-Mpl binding protein, 83.7 2.3 5E-05 45.8 6.1 69 255-328 174-247 (684)
193 KOG1996 mRNA splicing factor [ 83.4 2.5 5.5E-05 42.2 5.9 49 367-416 300-351 (378)
194 PF07576 BRAP2: BRCA1-associat 83.2 8.3 0.00018 33.2 8.3 61 353-413 13-73 (110)
195 KOG2068 MOT2 transcription fac 82.1 0.57 1.2E-05 47.4 0.9 76 256-331 77-161 (327)
196 KOG0804 Cytoplasmic Zn-finger 79.8 4.3 9.2E-05 42.8 6.3 66 256-321 74-141 (493)
197 PF10567 Nab6_mRNP_bdg: RNA-re 79.5 23 0.00051 35.5 11.0 156 255-412 14-209 (309)
198 PF14111 DUF4283: Domain of un 79.1 3.7 8.1E-05 36.2 5.1 110 268-389 29-140 (153)
199 KOG2202 U2 snRNP splicing fact 76.2 1.2 2.6E-05 43.6 1.0 48 368-416 83-132 (260)
200 PF15023 DUF4523: Protein of u 75.3 6.1 0.00013 35.7 5.1 61 350-416 83-147 (166)
201 PF04847 Calcipressin: Calcipr 75.2 7.7 0.00017 36.4 6.1 59 269-331 8-69 (184)
202 PF03880 DbpA: DbpA RNA bindin 72.8 12 0.00025 29.5 5.8 56 267-329 12-73 (74)
203 KOG0804 Cytoplasmic Zn-finger 69.3 12 0.00026 39.5 6.4 63 353-415 74-136 (493)
204 KOG4410 5-formyltetrahydrofola 67.2 33 0.00071 34.4 8.6 49 255-307 329-378 (396)
205 KOG4574 RNA-binding protein (c 63.3 4.4 9.5E-05 45.7 2.0 72 257-332 299-373 (1007)
206 KOG4285 Mitotic phosphoprotein 63.3 11 0.00025 37.8 4.7 63 353-421 197-259 (350)
207 PF11767 SET_assoc: Histone ly 63.1 51 0.0011 25.7 7.4 54 267-327 11-65 (66)
208 KOG2253 U1 snRNP complex, subu 62.1 6.8 0.00015 43.1 3.2 59 353-419 40-98 (668)
209 PRK14548 50S ribosomal protein 59.7 31 0.00067 28.3 5.9 57 355-412 22-79 (84)
210 KOG2068 MOT2 transcription fac 59.5 6.1 0.00013 40.1 2.1 70 354-424 78-155 (327)
211 KOG2193 IGF-II mRNA-binding pr 59.5 8.3 0.00018 40.4 3.1 56 354-415 2-58 (584)
212 PF03468 XS: XS domain; Inter 57.8 23 0.00049 30.7 5.2 49 355-405 10-67 (116)
213 TIGR03636 L23_arch archaeal ri 55.0 44 0.00096 26.9 6.0 55 355-410 15-70 (77)
214 PF03468 XS: XS domain; Inter 50.8 19 0.00042 31.1 3.6 58 258-316 10-77 (116)
215 KOG1924 RhoA GTPase effector D 50.6 61 0.0013 36.9 8.0 18 72-89 456-473 (1102)
216 KOG4483 Uncharacterized conser 50.5 46 0.001 34.8 6.7 65 254-323 389-454 (528)
217 KOG4483 Uncharacterized conser 42.9 48 0.001 34.8 5.4 66 352-422 390-455 (528)
218 KOG2318 Uncharacterized conser 42.4 90 0.0019 34.3 7.6 71 253-323 171-296 (650)
219 PF08952 DUF1866: Domain of un 35.3 88 0.0019 28.3 5.4 61 354-421 28-97 (146)
220 PRK01178 rps24e 30S ribosomal 35.0 77 0.0017 26.8 4.7 47 363-410 29-81 (99)
221 PF04847 Calcipressin: Calcipr 28.9 1.3E+02 0.0029 28.2 5.7 45 366-415 8-52 (184)
222 KOG3424 40S ribosomal protein 28.3 93 0.002 27.2 4.1 46 364-410 34-85 (132)
223 KOG2940 Predicted methyltransf 28.1 36 0.00079 33.4 1.8 27 73-101 16-42 (325)
224 PTZ00071 40S ribosomal protein 27.5 1.2E+02 0.0026 27.0 4.8 46 363-409 34-86 (132)
225 PF01282 Ribosomal_S24e: Ribos 26.5 2.1E+02 0.0046 23.2 5.8 47 363-410 11-63 (84)
226 PF10567 Nab6_mRNP_bdg: RNA-re 24.5 1.5E+02 0.0033 29.9 5.4 56 352-408 14-78 (309)
227 PTZ00191 60S ribosomal protein 24.3 2.1E+02 0.0047 25.8 5.9 55 355-410 83-138 (145)
228 PRK05738 rplW 50S ribosomal pr 23.5 1.3E+02 0.0028 24.9 4.1 36 354-389 20-56 (92)
229 KOG1924 RhoA GTPase effector D 23.3 2.1E+02 0.0046 32.8 6.7 15 68-82 448-462 (1102)
230 KOG2135 Proteins containing th 22.9 33 0.00071 36.6 0.5 69 356-429 375-445 (526)
231 KOG4574 RNA-binding protein (c 21.7 41 0.0009 38.3 1.0 61 357-422 302-365 (1007)
232 CHL00030 rpl23 ribosomal prote 20.8 1.5E+02 0.0033 24.7 4.0 36 354-389 19-55 (93)
No 1
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=3.7e-38 Score=330.12 Aligned_cols=318 Identities=19% Similarity=0.236 Sum_probs=235.4
Q ss_pred hhhhHhhhhhhhcCCCCCCCCCCCCCCCcccccC-CCcccCCCccccccCCCCCC--------------CCCCCccChHH
Q 013726 104 ETMAVVESASQDSAVSSAGSIPASNGQDHPKQNG-GTMVMPLDQGLYNQNNQRSN--------------GGGDFKRDMRE 168 (437)
Q Consensus 104 ~~~av~~s~a~~~gv~ks~~~~~~~~~~~~k~~~-et~vi~~~~~~~~~~g~r~~--------------~~~~~~~~~~e 168 (437)
..+||+.++|.++||.|+.++|++...++|++|+ ||+++++++.+|+.+|++-+ +..|+||..++
T Consensus 322 ~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~e 401 (725)
T KOG0110|consen 322 GANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEE 401 (725)
T ss_pred cccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHH
Confidence 3579999999999999999999999888999996 99999999999999997433 23699999999
Q ss_pred HHHHHHhcCCCCcccCCCCCCcCCCCC----CCCCCCCCCcc------------CCCCcccCCCCCCCC--CCCCcc---
Q 013726 169 LQELFSKLNPMAEEFVPPSLAKTNNNN----HGVNGFNGGFF------------ANNSLIFNNHNARNG--NVNANA--- 227 (437)
Q Consensus 169 l~~~f~~~gp~~~~llPP~~~~~~~~~----~~~~~~~~~~~------------~~~~~l~~~~~~~~p--~~~~~~--- 227 (437)
+.++|..||+..+++|||.|+.+++.+ +++.++..++| +|...++.. +.... ..+...
T Consensus 402 lt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~-pka~~~~~e~~~~~ee 480 (725)
T KOG0110|consen 402 LTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTED-PKADDLSAESRSKMEE 480 (725)
T ss_pred HHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCC-cccccccccccccccc
Confidence 999999999999999999999988833 45666666655 222333311 00000 000000
Q ss_pred cc--ccccCCCCCCCCCC---CCcchhhhhccCCcE-EEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-----Cc
Q 013726 228 AV--RRKKSFGQGKRRMN---SRTSLAQREEIIRRT-VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-----VL 296 (437)
Q Consensus 228 ~~--~~~~~~~~g~r~~~---~~~~~~~~~~~~~rt-LfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-----s~ 296 (437)
++ +.....++-..-.. ..............| |||.||++++|.++|...|...|.|.++.|...++. ++
T Consensus 481 ~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSm 560 (725)
T KOG0110|consen 481 NPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSM 560 (725)
T ss_pred CcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEecccccccccccc
Confidence 00 00000111000000 000011111222233 999999999999999999999999999988644422 68
Q ss_pred eEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhh
Q 013726 297 RFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 375 (437)
Q Consensus 297 GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~ 375 (437)
|||||+|.+.++|++|++ |+|+.++||.|.|..+... ... +-. .........++|.|+|||+.++..+|+.+|.
T Consensus 561 GfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k-~~~--~~g--K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~ 635 (725)
T KOG0110|consen 561 GFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENK-PAS--TVG--KKKSKKKKGTKILVRNIPFEATKREVRKLFT 635 (725)
T ss_pred ceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCc-ccc--ccc--cccccccccceeeeeccchHHHHHHHHHHHh
Confidence 999999999999999999 9999999999999998711 111 111 1111122368999999999999999999999
Q ss_pred hcCCceEEEEEeccCC--CcceEEEEEeCCHHHH---HHHHhhcCceeccCchhhhhhh
Q 013726 376 SVCGEVYRLRLLGDYH--HSTRIAFVEFVMVIAS---STLFIHTEFYILHNPSIAWLEE 429 (437)
Q Consensus 376 ~f~G~I~~v~i~kd~g--~srGfAFVeF~s~e~A---~kal~~~~~~~~~~~~i~~~~~ 429 (437)
.| |+|.+|+|++..+ .++|||||+|.++++| ..+|..||+|++|+ +|+||+.
T Consensus 636 aF-GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrL-VLEwA~~ 692 (725)
T KOG0110|consen 636 AF-GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRL-VLEWAKS 692 (725)
T ss_pred cc-cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhh-heehhcc
Confidence 95 9999999999844 4799999999997655 67788999999999 9999974
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=1.6e-26 Score=234.59 Aligned_cols=164 Identities=21% Similarity=0.342 Sum_probs=142.0
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
.....++|||+|||+++|+++|+++|+.||.|++|+++.|+.+ ++|||||+|.++++|.+|++ |++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 4456789999999999999999999999999999999998765 68999999999999999998 99999999999999
Q ss_pred ccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHH
Q 013726 329 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIA 406 (437)
Q Consensus 329 ~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~ 406 (437)
+++... .....++|||+|||.++|+++|+++|++| |.|..|+|++| +++++|||||+|.+.++
T Consensus 183 ~a~p~~--------------~~~~~~~lfV~nLp~~vtee~L~~~F~~f-G~V~~v~i~~d~~tg~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 183 YARPGG--------------ESIKDTNLYVTNLPRTITDDQLDTIFGKY-GQIVQKNILRDKLTGTPRGVAFVRFNKREE 247 (346)
T ss_pred cccccc--------------cccccceeEEeCCCCcccHHHHHHHHHhc-CCEEEEEEeecCCCCccceEEEEEECCHHH
Confidence 875211 01124689999999999999999999995 99999999988 67899999999999999
Q ss_pred HHHHHhhcCceecc----Cchhhhhhhh
Q 013726 407 SSTLFIHTEFYILH----NPSIAWLEEF 430 (437)
Q Consensus 407 A~kal~~~~~~~~~----~~~i~~~~~~ 430 (437)
|++|+...+...+. ...|.||++.
T Consensus 248 A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 248 AQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 99999887776543 2247777754
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=1e-24 Score=233.17 Aligned_cols=169 Identities=22% Similarity=0.352 Sum_probs=140.4
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++++++|+++|++||.|.+|+++.|+.+ ++|||||+|.+.++|.+|++ |||..++|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35678999999999999999999999999999999988755 69999999999999999999 9999999999999865
Q ss_pred CCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHH
Q 013726 331 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASS 408 (437)
Q Consensus 331 ~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~ 408 (437)
...... .+. ... ........++|||+|||+++++++|+++|++| |.|.+|+|.++ .++++|||||+|.+.++|.
T Consensus 185 ~~~p~a-~~~-~~~-~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F-G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 185 SNMPQA-QPI-IDM-VQEEAKKFNRIYVASVHPDLSETDIKSVFEAF-GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred cccccc-ccc-ccc-ccccccccceEEeecCCCCCCHHHHHHHHhhc-CCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 322111 000 000 00112235799999999999999999999995 99999999998 4679999999999999999
Q ss_pred HHHhhcCceeccCchhhh
Q 013726 409 TLFIHTEFYILHNPSIAW 426 (437)
Q Consensus 409 kal~~~~~~~~~~~~i~~ 426 (437)
+|+..++.+.++...|.+
T Consensus 261 kAI~amNg~elgGr~LrV 278 (612)
T TIGR01645 261 EAIASMNLFDLGGQYLRV 278 (612)
T ss_pred HHHHHhCCCeeCCeEEEE
Confidence 999999988776655543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=1.4e-24 Score=219.51 Aligned_cols=150 Identities=21% Similarity=0.376 Sum_probs=132.6
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
...+|||+|||+++|+++|+++|++||+|.+|+++.|+.+ ++|||||+|.+.++|.+|++ |+|..+.|++|.|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 3578999999999999999999999999999999998765 68999999999999999999 99999999999999874
Q ss_pred CCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHH
Q 013726 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASST 409 (437)
Q Consensus 332 ~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~k 409 (437)
... .....++|||+|||..+++++|+++|++| |.|..++++.+ .+.++|||||+|.+.++|++
T Consensus 82 ~~~--------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 82 PSS--------------DSIKGANLYVSGLPKTMTQHELESIFSPF-GQIITSRILSDNVTGLSKGVGFIRFDKRDEADR 146 (352)
T ss_pred ccc--------------cccccceEEECCccccCCHHHHHHHHhcc-CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 210 01234689999999999999999999995 99999999987 56799999999999999999
Q ss_pred HHhhcCceec
Q 013726 410 LFIHTEFYIL 419 (437)
Q Consensus 410 al~~~~~~~~ 419 (437)
|+...+....
T Consensus 147 ai~~l~g~~~ 156 (352)
T TIGR01661 147 AIKTLNGTTP 156 (352)
T ss_pred HHHHhCCCcc
Confidence 9877666544
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=9e-25 Score=220.92 Aligned_cols=168 Identities=20% Similarity=0.320 Sum_probs=133.9
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeee--eeeEEec
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGF--YPVRVLP 329 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~G--r~L~V~~ 329 (437)
..++|||+|||..+++++|+++|++||.|..++++.+..+ ++|||||+|.+.++|.+|++ |+|..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4568999999999999999999999999999999887643 68999999999999999999 99999877 5678877
Q ss_pred cCCCCCCCCC------------CC------------------------CC------------------------CCh---
Q 013726 330 SKTAIAPVNP------------TF------------------------LP------------------------RTE--- 346 (437)
Q Consensus 330 s~~~~~~~~~------------~~------------------------~p------------------------r~~--- 346 (437)
+......... .. .+ ...
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 6422200000 00 00 000
Q ss_pred --h-------------hhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHH
Q 013726 347 --D-------------EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASST 409 (437)
Q Consensus 347 --~-------------~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~k 409 (437)
. .......+|||+|||+++++++|+++|++| |.|.+++|++| ++.++|||||+|.+.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f-G~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF-GAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0 001123379999999999999999999995 99999999998 67899999999999999999
Q ss_pred HHhhcCceeccCch
Q 013726 410 LFIHTEFYILHNPS 423 (437)
Q Consensus 410 al~~~~~~~~~~~~ 423 (437)
|+..++++.++...
T Consensus 327 Ai~~lnG~~~~gr~ 340 (352)
T TIGR01661 327 AILSLNGYTLGNRV 340 (352)
T ss_pred HHHHhCCCEECCeE
Confidence 99988887776654
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=9.4e-24 Score=221.19 Aligned_cols=175 Identities=23% Similarity=0.304 Sum_probs=140.9
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEec
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 329 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~ 329 (437)
.+...++|||+|||..+++++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+||.|+|..+.|++|.|..
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 3456789999999999999999999999999999999988765 59999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHH
Q 013726 330 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIAS 407 (437)
Q Consensus 330 s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A 407 (437)
+............. ........++|||+|||..+|+++|+++|++| |.|..|.++++ .|+++|||||+|.+.++|
T Consensus 165 ~~~~~~~~~~~~~~--~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~-G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 165 SQAEKNRAAKAATH--QPGDIPNFLKLYVGNLHFNITEQELRQIFEPF-GDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred cchhhhhhhhcccc--cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 64321111000000 00001225899999999999999999999995 99999999987 457999999999999999
Q ss_pred HHHHhhcCceeccCc--hhhhhhh
Q 013726 408 STLFIHTEFYILHNP--SIAWLEE 429 (437)
Q Consensus 408 ~kal~~~~~~~~~~~--~i~~~~~ 429 (437)
.+|+...+++.+... .|.||.+
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccC
Confidence 999876666544433 4667543
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.91 E-value=9.3e-24 Score=227.20 Aligned_cols=152 Identities=26% Similarity=0.417 Sum_probs=134.0
Q ss_pred EEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCCC
Q 013726 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAI 334 (437)
Q Consensus 258 tLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~~ 334 (437)
+|||+|||+++|+++|+++|++||.|.+|++++|..+ ++|||||+|.+.++|.+|++ +++..+.|+.|+|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999999998864 68999999999999999998 99999999999999875321
Q ss_pred CCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhh
Q 013726 335 APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIH 413 (437)
Q Consensus 335 ~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~ 413 (437)
..+....++|||+|||.++++++|+++|++| |.|.+|++..+ .|+++|||||+|.+.++|.+|+..
T Consensus 82 ------------~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~-G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~ 148 (562)
T TIGR01628 82 ------------SLRRSGVGNIFVKNLDKSVDNKALFDTFSKF-GNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQK 148 (562)
T ss_pred ------------cccccCCCceEEcCCCccCCHHHHHHHHHhc-CCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHH
Confidence 1112234689999999999999999999995 99999999988 677999999999999999999987
Q ss_pred cCceeccCc
Q 013726 414 TEFYILHNP 422 (437)
Q Consensus 414 ~~~~~~~~~ 422 (437)
.+...++..
T Consensus 149 lng~~~~~~ 157 (562)
T TIGR01628 149 VNGMLLNDK 157 (562)
T ss_pred hcccEecCc
Confidence 776655443
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=5.1e-23 Score=196.02 Aligned_cols=160 Identities=23% Similarity=0.350 Sum_probs=135.6
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 333 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~ 333 (437)
--+||+.|...++.+.|++.|.+||+|.++++++|.++ ++|||||.|...++|++||. |||..|++|.|+-.|+.+.
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 45999999999999999999999999999999999976 69999999999999999999 9999999999999998765
Q ss_pred CCCCCCCCCCCChh--hhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 013726 334 IAPVNPTFLPRTED--EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLF 411 (437)
Q Consensus 334 ~~~~~~~~~pr~~~--~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal 411 (437)
....+.....-++- ..+...++|||+||+.-+||++|++.|++| |+|..||+.++.| ||||.|++.|+|.+|+
T Consensus 143 p~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f-G~I~EVRvFk~qG----YaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 143 PSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF-GPIQEVRVFKDQG----YAFVRFETKEAAAHAI 217 (321)
T ss_pred ccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC-CcceEEEEecccc----eEEEEecchhhHHHHH
Confidence 43322211100000 114456899999999999999999999996 9999999999866 9999999999999998
Q ss_pred hhcCceeccC
Q 013726 412 IHTEFYILHN 421 (437)
Q Consensus 412 ~~~~~~~~~~ 421 (437)
.+++.--++-
T Consensus 218 v~mNntei~G 227 (321)
T KOG0148|consen 218 VQMNNTEIGG 227 (321)
T ss_pred HHhcCceeCc
Confidence 8888754443
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.89 E-value=1.8e-22 Score=217.18 Aligned_cols=174 Identities=21% Similarity=0.323 Sum_probs=139.5
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEee----eeeeEE
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLG----FYPVRV 327 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~----Gr~L~V 327 (437)
...++|||+|||.++|+++|+++|+.||.|.++.+..+... ++|||||+|.+.++|.+|++ |+|..+. |+.|.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 34578999999999999999999999999999999888654 58999999999999999999 9999999 999999
Q ss_pred eccCCCCCCCCC---CCCC-CChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeC
Q 013726 328 LPSKTAIAPVNP---TFLP-RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFV 402 (437)
Q Consensus 328 ~~s~~~~~~~~~---~~~p-r~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~ 402 (437)
.++......... .+.. ..........++|||+||+.++|+++|+++|++| |.|.+|++..| .+.++|||||+|.
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~-G~i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSEC-GEITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhc-CCeEEEEEEECCCCCcCCeEEEEeC
Confidence 876432111000 0000 0001113345789999999999999999999995 99999999998 6789999999999
Q ss_pred CHHHHHHHHhhcCceeccCch--hhhhh
Q 013726 403 MVIASSTLFIHTEFYILHNPS--IAWLE 428 (437)
Q Consensus 403 s~e~A~kal~~~~~~~~~~~~--i~~~~ 428 (437)
+.++|.+|+...+...++... |.||.
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 999999999877766555443 45544
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=1.7e-21 Score=206.61 Aligned_cols=164 Identities=21% Similarity=0.218 Sum_probs=127.2
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcC------------CCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEe
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGC------------GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTML 320 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~------------G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l 320 (437)
....++|||+|||+.+|+++|+++|..+ +.|..+.+.. .+|||||+|.+.++|..||.|+|..+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~----~kg~afVeF~~~e~A~~Al~l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK----EKNFAFLEFRTVEEATFAMALDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC----CCCEEEEEeCCHHHHhhhhcCCCeEe
Confidence 4466899999999999999999999864 3455555533 35899999999999999999999999
Q ss_pred eeeeeEEeccCCCCCCCCCC-----CCCC----------ChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEE
Q 013726 321 GFYPVRVLPSKTAIAPVNPT-----FLPR----------TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 385 (437)
Q Consensus 321 ~Gr~L~V~~s~~~~~~~~~~-----~~pr----------~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~ 385 (437)
.|+.|.|............. ..+. .........++|||+|||..+|+++|+++|++| |.|..+.
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~~~ 326 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF-GDLKAFN 326 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEE
Confidence 99999998654322111000 0000 000112345799999999999999999999995 9999999
Q ss_pred Eecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 386 LLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 386 i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
++++ +|.++|||||+|.+.++|..|+...++..+..
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~ 364 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD 364 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 9987 67799999999999999999987666554443
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.87 E-value=2.4e-21 Score=205.13 Aligned_cols=165 Identities=24% Similarity=0.304 Sum_probs=133.1
Q ss_pred cCCcEEEEecCCc-cchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 254 IIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 254 ~~~rtLfVgNLp~-~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
...++|||+|||+ .+|+++|+++|+.||.|.+|+++.++ +|||||+|.+.++|..|+. |||..+.|++|+|.+++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4568999999998 69999999999999999999998874 4899999999999999999 99999999999999876
Q ss_pred CCCCCCCC------------CCCC----CChh-------hhcccccEEEEEcCCccCCHHHHHHHhhhcCCc--eEEEEE
Q 013726 332 TAIAPVNP------------TFLP----RTED-------EREMCARTIYCTNIDKKVTQADVKLFFESVCGE--VYRLRL 386 (437)
Q Consensus 332 ~~~~~~~~------------~~~p----r~~~-------~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~--I~~v~i 386 (437)
........ .+.. +... ....++.+|||+|||.++|+++|+++|+++ |. |..+++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~-G~~~i~~ik~ 428 (481)
T TIGR01649 350 QQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAEN-GVHKVKKFKF 428 (481)
T ss_pred cccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhc-CCccceEEEE
Confidence 43211100 0000 0000 001245799999999999999999999995 98 888988
Q ss_pred eccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc
Q 013726 387 LGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP 422 (437)
Q Consensus 387 ~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~ 422 (437)
..+.+..+|+|||+|.+.++|.+|+...+.+.+..+
T Consensus 429 ~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~ 464 (481)
T TIGR01649 429 FPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEP 464 (481)
T ss_pred ecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCC
Confidence 765545689999999999999999998888766553
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=7.7e-21 Score=201.67 Aligned_cols=170 Identities=15% Similarity=0.176 Sum_probs=132.8
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||..+|+++|+++|+.||.|..+.++.++.+ ++|||||+|.+.++|..|+. |+|..++|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999988754 58999999999999999998 9999999999999987
Q ss_pred CCCCCCCCCCCC---------CCC-h----hhhcccccEEEEEcCCccC----------CHHHHHHHhhhcCCceEEEEE
Q 013726 331 KTAIAPVNPTFL---------PRT-E----DEREMCARTIYCTNIDKKV----------TQADVKLFFESVCGEVYRLRL 386 (437)
Q Consensus 331 ~~~~~~~~~~~~---------pr~-~----~~~~~~~~tL~V~NLp~~v----------teedLrelF~~f~G~I~~v~i 386 (437)
............ +.. . .....++.+|+|.|+...- ..++|+++|++| |.|..|.|
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~-G~v~~v~i 451 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKY-GPLINIVI 451 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhc-CCeeEEEe
Confidence 543221111000 000 0 0012356789999996421 236899999995 99999999
Q ss_pred eccC-----CCcceEEEEEeCCHHHHHHHHhhcCceeccCchh
Q 013726 387 LGDY-----HHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424 (437)
Q Consensus 387 ~kd~-----g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~i 424 (437)
+++. +...|+|||+|.+.++|++|+..+++.......|
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v 494 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVV 494 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 9752 3367999999999999999999888766655443
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.86 E-value=1e-21 Score=177.80 Aligned_cols=157 Identities=25% Similarity=0.334 Sum_probs=137.3
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
...||||+||+..++++.|.++|-+.|+|.++++.+|+.+ .+||||++|.++|+|+-|++ ||...+-|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3479999999999999999999999999999999998865 59999999999999999999 99999999999999875
Q ss_pred CCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEE-EEecc--CCCcceEEEEEeCCHHHHH
Q 013726 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRL-RLLGD--YHHSTRIAFVEFVMVIASS 408 (437)
Q Consensus 332 ~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v-~i~kd--~g~srGfAFVeF~s~e~A~ 408 (437)
.. ......+.+|||+||++.+++..|.+.|+.| |.|.+. .+.++ +|+++|||||.|.+.+.+.
T Consensus 88 ~~-------------~~nl~vganlfvgNLd~~vDe~~L~dtFsaf-G~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 88 AH-------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAF-GVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred cc-------------cccccccccccccccCcchhHHHHHHHHHhc-cccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 11 1112234799999999999999999999985 998874 56666 5789999999999999999
Q ss_pred HHHhhcCceeccCchhh
Q 013726 409 TLFIHTEFYILHNPSIA 425 (437)
Q Consensus 409 kal~~~~~~~~~~~~i~ 425 (437)
+|++.++..+++|+.|.
T Consensus 154 ~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 154 AAIGSMNGQYLCNRPIT 170 (203)
T ss_pred HHHHHhccchhcCCceE
Confidence 99999999999988653
No 14
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=3e-21 Score=194.38 Aligned_cols=157 Identities=22% Similarity=0.260 Sum_probs=138.6
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEe-eeeeeEEecc
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTML-GFYPVRVLPS 330 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l-~Gr~L~V~~s 330 (437)
..+-||||.||.++.|++|..+|++.|+|-.+|++.|+.+ ++|||||.|.+++.|++|++ ||++.| .|+.|.|+.+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 3467999999999999999999999999999999999765 69999999999999999999 999988 5899999976
Q ss_pred CCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCC-ceEEEEEecc---CCCcceEEEEEeCCHHH
Q 013726 331 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGD---YHHSTRIAFVEFVMVIA 406 (437)
Q Consensus 331 ~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G-~I~~v~i~kd---~g~srGfAFVeF~s~e~ 406 (437)
. ..+.|||+|||.+.++++|.+.+++. + .|..|.+... ..+.||||||+|.++.+
T Consensus 162 v--------------------an~RLFiG~IPK~k~keeIlee~~kV-teGVvdVivy~~p~dk~KNRGFaFveYe~H~~ 220 (506)
T KOG0117|consen 162 V--------------------ANCRLFIGNIPKTKKKEEILEEMKKV-TEGVVDVIVYPSPDDKTKNRGFAFVEYESHRA 220 (506)
T ss_pred e--------------------ecceeEeccCCccccHHHHHHHHHhh-CCCeeEEEEecCccccccccceEEEEeecchh
Confidence 4 23799999999999999999999997 6 4778877765 45699999999999887
Q ss_pred H----HHHHhhcCceeccCchhhhhhhhcC
Q 013726 407 S----STLFIHTEFYILHNPSIAWLEEFSG 432 (437)
Q Consensus 407 A----~kal~~~~~~~~~~~~i~~~~~~sg 432 (437)
| ++++.+.-.++.|.+.+.||+.-++
T Consensus 221 Aa~aRrKl~~g~~klwgn~~tVdWAep~~e 250 (506)
T KOG0117|consen 221 AAMARRKLMPGKIKLWGNAITVDWAEPEEE 250 (506)
T ss_pred HHHHHhhccCCceeecCCcceeeccCcccC
Confidence 7 5667777788999999999987654
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.2e-21 Score=196.49 Aligned_cols=152 Identities=22% Similarity=0.308 Sum_probs=129.6
Q ss_pred hhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeE-ee--eee
Q 013726 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTM-LG--FYP 324 (437)
Q Consensus 251 ~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~-l~--Gr~ 324 (437)
..+.+.-.+||+.||..++|.||+++|++||.|.+|.+++|+.+ ++|||||.|.+.++|.+|+. |++.. |- .++
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 44566778999999999999999999999999999999999976 69999999999999999999 76654 43 358
Q ss_pred eEEeccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCC
Q 013726 325 VRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVM 403 (437)
Q Consensus 325 L~V~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s 403 (437)
|.|+++.. +.++-...++|||+-|+..+||.+|+++|++| |.|+.|.|.+| .+.+||+|||.|.+
T Consensus 109 vqvk~Ad~-------------E~er~~~e~KLFvg~lsK~~te~evr~iFs~f-G~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 109 VQVKYADG-------------ERERIVEERKLFVGMLSKQCTENEVREIFSRF-GHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred eeecccch-------------hhhccccchhhhhhhccccccHHHHHHHHHhh-CccchhhheecccccccceeEEEEeh
Confidence 88888752 11222235899999999999999999999996 99999999999 67799999999999
Q ss_pred HHHHHHHHhhcCc
Q 013726 404 VIASSTLFIHTEF 416 (437)
Q Consensus 404 ~e~A~kal~~~~~ 416 (437)
.+.|..|+...|.
T Consensus 175 ke~A~~Aika~ng 187 (510)
T KOG0144|consen 175 KEMAVAAIKALNG 187 (510)
T ss_pred HHHHHHHHHhhcc
Confidence 9988766665554
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=3.3e-21 Score=182.70 Aligned_cols=149 Identities=21% Similarity=0.390 Sum_probs=132.7
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
++..+.|.|.-||.++|+++++.+|.+.|+|++|++++|+-+ +.|||||.|.++++|++|+. |||..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 456678999999999999999999999999999999999966 69999999999999999999 999999999999999
Q ss_pred cCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHH
Q 013726 330 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIAS 407 (437)
Q Consensus 330 s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A 407 (437)
++.. . .......|||.+||.++|+++|.++|++| |.|..-+|+.| +|-+||.|||.|+-.++|
T Consensus 118 ARPS-----------s---~~Ik~aNLYvSGlPktMtqkelE~iFs~f-GrIItSRiL~dqvtg~srGVgFiRFDKr~EA 182 (360)
T KOG0145|consen 118 ARPS-----------S---DSIKDANLYVSGLPKTMTQKELEQIFSPF-GRIITSRILVDQVTGLSRGVGFIRFDKRIEA 182 (360)
T ss_pred ccCC-----------h---hhhcccceEEecCCccchHHHHHHHHHHh-hhhhhhhhhhhcccceecceeEEEecchhHH
Confidence 8621 1 12234799999999999999999999996 99999999998 677999999999999999
Q ss_pred HHHHhhcCc
Q 013726 408 STLFIHTEF 416 (437)
Q Consensus 408 ~kal~~~~~ 416 (437)
..|+...++
T Consensus 183 e~AIk~lNG 191 (360)
T KOG0145|consen 183 EEAIKGLNG 191 (360)
T ss_pred HHHHHhccC
Confidence 887766554
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.85 E-value=6.3e-21 Score=203.78 Aligned_cols=156 Identities=21% Similarity=0.238 Sum_probs=126.0
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEee-eeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~-Gr~L~V~~s 330 (437)
...++|||+|||+++++++|+++|++||.|.+|+++.|... ++|||||+|.+.++|++||+ ||+..+. |+.|.|..+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 34589999999999999999999999999999999988533 69999999999999999999 9999885 777777654
Q ss_pred CCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEec---cCCCcceEEEEEeCCHHHH
Q 013726 331 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG---DYHHSTRIAFVEFVMVIAS 407 (437)
Q Consensus 331 ~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~k---d~g~srGfAFVeF~s~e~A 407 (437)
. ..++|||+|||.++|+++|.+.|++++..+..+.+.. +.++++|||||+|.+.++|
T Consensus 136 ~--------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edA 195 (578)
T TIGR01648 136 V--------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAA 195 (578)
T ss_pred c--------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHH
Confidence 2 1379999999999999999999999633455554432 2456899999999999999
Q ss_pred HHHHhhcC--c--eeccCchhhhhhh
Q 013726 408 STLFIHTE--F--YILHNPSIAWLEE 429 (437)
Q Consensus 408 ~kal~~~~--~--~~~~~~~i~~~~~ 429 (437)
.+|+.... . +..+...+.|++.
T Consensus 196 a~AirkL~~gki~l~Gr~I~VdwA~p 221 (578)
T TIGR01648 196 AMARRKLMPGRIQLWGHVIAVDWAEP 221 (578)
T ss_pred HHHHHHhhccceEecCceEEEEeecc
Confidence 88765432 1 2334445778764
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.85 E-value=2e-20 Score=198.24 Aligned_cols=155 Identities=20% Similarity=0.153 Sum_probs=125.1
Q ss_pred CcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-h--cCeEeeeeeeEEeccCC
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-L--AGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-l--ng~~l~Gr~L~V~~s~~ 332 (437)
+++|||+|||+++|+++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++ + ++..++|++|.|.++..
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 589999999999999999999999999999999864 4799999999999999998 4 78899999999999853
Q ss_pred CCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHh
Q 013726 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFI 412 (437)
Q Consensus 333 ~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~ 412 (437)
........ . ...........+|+|+||++.+|+++|+++|++| |.|.+|.+.++.+ +|+|||+|.+.++|.+|+.
T Consensus 78 ~~~~~~~~-~-~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~-G~V~~v~i~~~~~--~~~afVef~~~~~A~~A~~ 152 (481)
T TIGR01649 78 QEIKRDGN-S-DFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPY-GKVLRIVTFTKNN--VFQALVEFESVNSAQHAKA 152 (481)
T ss_pred cccccCCC-C-cccCCCCCceEEEEEcCCCCCCCHHHHHHHHhcc-CCEEEEEEEecCC--ceEEEEEECCHHHHHHHHH
Confidence 22111100 0 0000011233589999999999999999999995 9999999987654 5799999999999999987
Q ss_pred hcCceec
Q 013726 413 HTEFYIL 419 (437)
Q Consensus 413 ~~~~~~~ 419 (437)
..++..+
T Consensus 153 ~Lng~~i 159 (481)
T TIGR01649 153 ALNGADI 159 (481)
T ss_pred HhcCCcc
Confidence 6666543
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=9.2e-20 Score=187.21 Aligned_cols=159 Identities=22% Similarity=0.287 Sum_probs=129.2
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCC-ceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSV-LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s-~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
..-.|.|+|||+.+.+.+|+.+|+.||.|..|.|++.+.+. .|||||.|....+|..|++ +|+..|+|++|-|.|+-.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 36789999999999999999999999999999998766553 7999999999999999999 999999999999999632
Q ss_pred CCCC---------------------C-CCC--------------------CC-----------------------CCCh-
Q 013726 333 AIAP---------------------V-NPT--------------------FL-----------------------PRTE- 346 (437)
Q Consensus 333 ~~~~---------------------~-~~~--------------------~~-----------------------pr~~- 346 (437)
...- . ... .. +...
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 1000 0 000 00 0000
Q ss_pred ----------hhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhc
Q 013726 347 ----------DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHT 414 (437)
Q Consensus 347 ----------~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~ 414 (437)
.+......+|||+|||+++|+++|.+.|++| |+|.++.|+.+ +++++|-|||.|.+..+|+.++...
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskF-G~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKF-GEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhh-ccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 0001123699999999999999999999996 99999999887 7889999999999999999888776
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.4e-19 Score=185.04 Aligned_cols=143 Identities=23% Similarity=0.388 Sum_probs=130.5
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCCCC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIA 335 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~~~ 335 (437)
.+|||| +++|+..|.++|+.+|+|.++++++|. ++.|||||.|.++++|.+||. ||...+.|++|++.|+.+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-
Confidence 368999 899999999999999999999999999 799999999999999999999 99999999999999985211
Q ss_pred CCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcC
Q 013726 336 PVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTE 415 (437)
Q Consensus 336 ~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~ 415 (437)
..|||+||++++|.++|.++|+.| |+|.+|++..+.+.++|| ||+|++.++|++++...+
T Consensus 77 ------------------~~~~i~nl~~~~~~~~~~d~f~~~-g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~n 136 (369)
T KOG0123|consen 77 ------------------SLVFIKNLDESIDNKSLYDTFSEF-GNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLN 136 (369)
T ss_pred ------------------ceeeecCCCcccCcHHHHHHHHhh-cCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhc
Confidence 229999999999999999999995 999999999995559999 999999999999999998
Q ss_pred ceeccCchh
Q 013726 416 FYILHNPSI 424 (437)
Q Consensus 416 ~~~~~~~~i 424 (437)
+.+++...|
T Consensus 137 g~ll~~kki 145 (369)
T KOG0123|consen 137 GMLLNGKKI 145 (369)
T ss_pred CcccCCCee
Confidence 877776543
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.81 E-value=6.4e-19 Score=188.46 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=124.1
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCC-eeEEEEeeC---CCCCceEEEEEEcCHHHHHHHHH-hcC--eEeeeeeeEE
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRICGD---PNSVLRFAFIEFTDEEGARAALN-LAG--TMLGFYPVRV 327 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~-I~~vri~~d---~~~s~GfaFVeF~~~e~A~~Al~-lng--~~l~Gr~L~V 327 (437)
..++|||+|||.++|+++|.+.|+.++. +..+.+... ...++|||||+|.+.++|..|++ |+. ..+.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4688999999999999999999999863 444444322 23468999999999999999998 643 4688999999
Q ss_pred eccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcC--CceEEEEEeccCCCcceEEEEEeCCHH
Q 013726 328 LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVC--GEVYRLRLLGDYHHSTRIAFVEFVMVI 405 (437)
Q Consensus 328 ~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~--G~I~~v~i~kd~g~srGfAFVeF~s~e 405 (437)
.++....... .+.....++|||+||+.++|+++|+++|++ | |.|++|++++ +||||+|++.+
T Consensus 217 dwA~p~~~~d---------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~-f~~G~I~rV~~~r------gfAFVeF~s~e 280 (578)
T TIGR01648 217 DWAEPEEEVD---------EDVMAKVKILYVRNLMTTTTEEIIEKSFSE-FKPGKVERVKKIR------DYAFVHFEDRE 280 (578)
T ss_pred Eeeccccccc---------ccccccccEEEEeCCCCCCCHHHHHHHHHh-cCCCceEEEEeec------CeEEEEeCCHH
Confidence 9875321110 111223479999999999999999999998 8 9999998764 49999999999
Q ss_pred HHHHHHhhcCceeccCc--hhhhhhhh
Q 013726 406 ASSTLFIHTEFYILHNP--SIAWLEEF 430 (437)
Q Consensus 406 ~A~kal~~~~~~~~~~~--~i~~~~~~ 430 (437)
+|.+|+...+...+... .|.||...
T Consensus 281 ~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 281 DAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred HHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 99999986665433332 58888654
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=2.2e-19 Score=184.44 Aligned_cols=171 Identities=20% Similarity=0.253 Sum_probs=138.8
Q ss_pred CcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
..||||++||+.++.++|.++|+..|+|..|.++.++.+ .+|||||.|.-.|++++|++ ..+..+.|+.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 379999999999999999999999999999999998876 59999999999999999999 999999999999988753
Q ss_pred CCCCCCCC----------CCCCChhhh--cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEE
Q 013726 333 AIAPVNPT----------FLPRTEDER--EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFV 399 (437)
Q Consensus 333 ~~~~~~~~----------~~pr~~~~~--~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFV 399 (437)
-....... .....+... ......|+|+|||+.+.+.+|+.+|+.| |.|..|.||+. .|+-.|||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~-G~V~Ei~IP~k~dgklcGFaFV 163 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF-GKVVEIVIPRKKDGKLCGFAFV 163 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc-ceEEEEEcccCCCCCccceEEE
Confidence 22111000 000011111 2235799999999999999999999996 99999999988 5667799999
Q ss_pred EeCCHHHHHHHHhhcCce-eccCc-hhhhh
Q 013726 400 EFVMVIASSTLFIHTEFY-ILHNP-SIAWL 427 (437)
Q Consensus 400 eF~s~e~A~kal~~~~~~-~~~~~-~i~~~ 427 (437)
+|....+|.+|+..++.. +.+.| .+.||
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 999999999888877764 44444 36776
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.80 E-value=1.9e-18 Score=181.07 Aligned_cols=166 Identities=23% Similarity=0.311 Sum_probs=129.7
Q ss_pred CcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
.++|||+|||..+|+++|+++|+.||.|..|.+..++.+ ++|||||+|.+.++|.+|+. |+|..+.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 689999999999999999999999999999999988765 58999999999999999999 999999999999999532
Q ss_pred CCCCCC------------------------------------------CC------------------CCC---------
Q 013726 333 AIAPVN------------------------------------------PT------------------FLP--------- 343 (437)
Q Consensus 333 ~~~~~~------------------------------------------~~------------------~~p--------- 343 (437)
...... +. ..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 110000 00 000
Q ss_pred -----CChhh--hcccccEEEEEcCCccCC----------HHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHH
Q 013726 344 -----RTEDE--REMCARTIYCTNIDKKVT----------QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIA 406 (437)
Q Consensus 344 -----r~~~~--~~~~~~tL~V~NLp~~vt----------eedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~ 406 (437)
..... ....+++|+|.||....+ .+||++.|++| |.|..|.+... ...|++||+|.+.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~-G~v~~v~v~~~--~~~G~~fV~F~~~e~ 422 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKY-GGVVHIYVDTK--NSAGKIYLKFSSVDA 422 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhc-CCeeEEEEeCC--CCceeEEEEECCHHH
Confidence 00000 124567899999955544 37899999995 99999998743 457899999999999
Q ss_pred HHHHHhhcCceeccCchh
Q 013726 407 SSTLFIHTEFYILHNPSI 424 (437)
Q Consensus 407 A~kal~~~~~~~~~~~~i 424 (437)
|.+|+...++...+...|
T Consensus 423 A~~A~~~lnGr~f~gr~i 440 (457)
T TIGR01622 423 ALAAFQALNGRYFGGKMI 440 (457)
T ss_pred HHHHHHHhcCcccCCeEE
Confidence 999988888766655443
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.3e-19 Score=176.72 Aligned_cols=162 Identities=23% Similarity=0.388 Sum_probs=134.9
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
.-+.||||.|.++..|+.|+..|..||+|+++.+..|+-+ .+|||||+|+-+|.|+-|++ |||..++||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 4578999999999999999999999999999999988866 59999999999999999999 99999999999998642
Q ss_pred CCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-C-CCcceEEEEEeCCHHHHHH
Q 013726 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-Y-HHSTRIAFVEFVMVIASST 409 (437)
Q Consensus 332 ~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~-g~srGfAFVeF~s~e~A~k 409 (437)
++....+.. ..-.+....-+.|||..+.++++++||+..|+.| |+|.+|.+-++ + +.++||+|++|.+..+-..
T Consensus 192 -NmpQAQpiI--D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF-G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 192 -NMPQAQPII--DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF-GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred -CCcccchHH--HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh-cceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 111111110 0011223345799999999999999999999995 99999999998 3 4599999999999998888
Q ss_pred HHhhcCceecc
Q 013726 410 LFIHTEFYILH 420 (437)
Q Consensus 410 al~~~~~~~~~ 420 (437)
|++.++.+-++
T Consensus 268 AiasMNlFDLG 278 (544)
T KOG0124|consen 268 AIASMNLFDLG 278 (544)
T ss_pred Hhhhcchhhcc
Confidence 88888876443
No 25
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=4.1e-18 Score=171.87 Aligned_cols=154 Identities=21% Similarity=0.281 Sum_probs=127.5
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCC-CeeEEEEeeCC---CCCceEEEEEEcCHHHHHHHHH--hcCe-Eeeeeee
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDP---NSVLRFAFIEFTDEEGARAALN--LAGT-MLGFYPV 325 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G-~I~~vri~~d~---~~s~GfaFVeF~~~e~A~~Al~--lng~-~l~Gr~L 325 (437)
..+.+.|||||||.+.++++|.+.|++.+ .|+.|.+...+ ..++|||||+|.+...|..|-+ +++. .+.|+.+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 45678899999999999999999999887 46777775444 3479999999999999999976 5554 5899999
Q ss_pred EEeccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHH
Q 013726 326 RVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVI 405 (437)
Q Consensus 326 ~V~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e 405 (437)
.|.|+.....+. + +.....+.|||+||+.++|+|.|+++|++| |.|++|+.++| ||||+|.+.+
T Consensus 241 tVdWAep~~e~d--------e-d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~-G~veRVkk~rD------YaFVHf~eR~ 304 (506)
T KOG0117|consen 241 TVDWAEPEEEPD--------E-DTMSKVKVLYVRNLMESTTEETLKKLFNEF-GKVERVKKPRD------YAFVHFAERE 304 (506)
T ss_pred eeeccCcccCCC--------h-hhhhheeeeeeeccchhhhHHHHHHHHHhc-cceEEeecccc------eeEEeecchH
Confidence 999986322211 1 124456799999999999999999999996 99999999876 9999999999
Q ss_pred HHHHHHhhcCceeccCc
Q 013726 406 ASSTLFIHTEFYILHNP 422 (437)
Q Consensus 406 ~A~kal~~~~~~~~~~~ 422 (437)
+|.+|+..++.+-+.-.
T Consensus 305 davkAm~~~ngkeldG~ 321 (506)
T KOG0117|consen 305 DAVKAMKETNGKELDGS 321 (506)
T ss_pred HHHHHHHHhcCceecCc
Confidence 99999999998766543
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=5.4e-18 Score=173.47 Aligned_cols=155 Identities=20% Similarity=0.343 Sum_probs=134.6
Q ss_pred EEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCCCCC
Q 013726 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAP 336 (437)
Q Consensus 258 tLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~~~~ 336 (437)
.|||.||+++++..+|.++|+.||.|++|++..+.+.++|| ||+|.++++|.+|++ +||..+.|++|.|.........
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 39999999999999999999999999999999999999999 999999999999999 9999999999999886532222
Q ss_pred CCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcC
Q 013726 337 VNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTE 415 (437)
Q Consensus 337 ~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~ 415 (437)
..+... .....+.++++|++.+.+++.|.++|+.+ |.|.++.++.+ .++++||+||.|.++++|..++...+
T Consensus 157 ~~~~~~------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~-g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 157 EAPLGE------YKKRFTNVYVKNLEEDSTDEELKDLFSAY-GSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred cccccc------hhhhhhhhheeccccccchHHHHHhhccc-CcceEEEEeecCCCCCCCccceeecChhHHHHHHHhcc
Confidence 211111 23345789999999999999999999995 99999999998 67799999999999999999988877
Q ss_pred ceecc
Q 013726 416 FYILH 420 (437)
Q Consensus 416 ~~~~~ 420 (437)
.-...
T Consensus 230 ~~~~~ 234 (369)
T KOG0123|consen 230 GKIFG 234 (369)
T ss_pred CCcCC
Confidence 65443
No 27
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=7.4e-18 Score=160.06 Aligned_cols=171 Identities=20% Similarity=0.300 Sum_probs=139.5
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeee--eeEEe
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFY--PVRVL 328 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr--~L~V~ 328 (437)
.....|||.+||..+|..||..+|++||.|..-++..|..+ ++|.|||.|...++|+.|++ |||..--|. +|.|+
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVK 204 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEE
Confidence 34567999999999999999999999999998888887765 69999999999999999999 999987665 78998
Q ss_pred ccCCCCCCCCCC--------------------------------------CCCCChh-----------hhcccccEEEEE
Q 013726 329 PSKTAIAPVNPT--------------------------------------FLPRTED-----------EREMCARTIYCT 359 (437)
Q Consensus 329 ~s~~~~~~~~~~--------------------------------------~~pr~~~-----------~~~~~~~tL~V~ 359 (437)
++.......... +.|-..+ .......+|||-
T Consensus 205 FannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvY 284 (360)
T KOG0145|consen 205 FANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVY 284 (360)
T ss_pred ecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEE
Confidence 875432111000 0110000 012235689999
Q ss_pred cCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCchhh
Q 013726 360 NIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSIA 425 (437)
Q Consensus 360 NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~i~ 425 (437)
||.++.+|.-|+++|.+| |.|.+|++++| +++.+|||||...+.++|.-|+...++|.+.+.+++
T Consensus 285 NLspd~de~~LWQlFgpF-GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 285 NLSPDADESILWQLFGPF-GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred ecCCCchHhHHHHHhCcc-cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 999999999999999996 99999999999 467999999999999999999999999999887664
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.73 E-value=7.3e-18 Score=162.33 Aligned_cols=126 Identities=25% Similarity=0.438 Sum_probs=115.1
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCCCC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIA 335 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~~~ 335 (437)
-.|||||||.++++.+|+.+|++||.|.+|.|+.+ ||||..++...|..|+. |+|..|+|..|+|+.++..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK-- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK-- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEecccc--
Confidence 35899999999999999999999999999999854 99999999999999999 9999999999999987621
Q ss_pred CCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 013726 336 PVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLF 411 (437)
Q Consensus 336 ~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal 411 (437)
+..+++|+|+||.+.++.++|+..|+++ |.|..|+|.+| |+||+|+-.++|..|+
T Consensus 75 --------------sk~stkl~vgNis~tctn~ElRa~fe~y-gpviecdivkd------y~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 75 --------------SKASTKLHVGNISPTCTNQELRAKFEKY-GPVIECDIVKD------YAFVHFDRAEDAVEAI 129 (346)
T ss_pred --------------CCCccccccCCCCccccCHHHhhhhccc-CCceeeeeecc------eeEEEEeeccchHHHH
Confidence 2345899999999999999999999995 99999999875 9999999999986665
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.70 E-value=9.7e-18 Score=173.07 Aligned_cols=173 Identities=26% Similarity=0.333 Sum_probs=142.3
Q ss_pred hhhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEE
Q 013726 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRV 327 (437)
Q Consensus 250 ~~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V 327 (437)
..++.+.+|+|+-.|+..++..+|.++|+..|.|..|+++.|..+ ++|.|||+|.+.+++..|+.|.|..+.|.+|.|
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 356778899999999999999999999999999999999999876 699999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCCCCh-hhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCH
Q 013726 328 LPSKTAIAPVNPTFLPRTE-DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMV 404 (437)
Q Consensus 328 ~~s~~~~~~~~~~~~pr~~-~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~ 404 (437)
+.+.......... .+... .....+...|||+||.+.+++++|+.+|++| |.|..|.+.+| +|.++|||||+|.+.
T Consensus 253 q~sEaeknr~a~~-s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf-g~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 253 QLSEAEKNRAANA-SPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF-GKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred cccHHHHHHHHhc-cccccccccccchhhhhhcccccCchHHHHhhhccCc-ccceeeeeccccccccccCcceEEEecH
Confidence 9865322111000 00000 0111222349999999999999999999996 99999999999 788999999999999
Q ss_pred HHHHHHHhhcCceeccCchh
Q 013726 405 IASSTLFIHTEFYILHNPSI 424 (437)
Q Consensus 405 e~A~kal~~~~~~~~~~~~i 424 (437)
++|++|+...+++.+--..|
T Consensus 331 ~~ar~a~e~lngfelAGr~i 350 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLI 350 (549)
T ss_pred HHHHHHHHHhccceecCceE
Confidence 99999988888776654433
No 30
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.64 E-value=4.7e-16 Score=154.95 Aligned_cols=153 Identities=22% Similarity=0.351 Sum_probs=128.4
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~~ 332 (437)
+.++|||++|++.++++.|++.|.+||.|..|.+++|+.+ ++||+||+|.+.+...+++......|+|+.|.+..+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 6789999999999999999999999999999999999876 59999999999999999998777889999998887642
Q ss_pred CCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHH
Q 013726 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 333 ~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~--g~srGfAFVeF~s~e~A~ka 410 (437)
-..... ........+|||++||.+++++++++.|++| |.|..+.+..|. ..++||+||.|.+.+++.++
T Consensus 85 r~~~~~--------~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~-g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 85 REDQTK--------VGRHLRTKKIFVGGLPPDTTEEDFKDYFEQF-GKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred cccccc--------cccccceeEEEecCcCCCCchHHHhhhhhcc-ceeEeeEEeecccccccccceeeEecccccccee
Confidence 111110 0111245799999999999999999999996 999999999884 45999999999999999777
Q ss_pred HhhcCc
Q 013726 411 FIHTEF 416 (437)
Q Consensus 411 l~~~~~ 416 (437)
+..+-.
T Consensus 156 ~~~~f~ 161 (311)
T KOG4205|consen 156 TLQKFH 161 (311)
T ss_pred ccccee
Confidence 655443
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.63 E-value=2.4e-14 Score=153.84 Aligned_cols=77 Identities=21% Similarity=0.412 Sum_probs=71.7
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
..++|||+|||+++++++|+++|+.||.|.+|++.+++.+ ++|||||+|.+.++|.+|++ ||+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4578999999999999999999999999999999998765 59999999999999999999 99999999999997754
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3e-15 Score=143.20 Aligned_cols=131 Identities=21% Similarity=0.281 Sum_probs=108.2
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccCC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~~ 332 (437)
+...|||||+||+..+||+-|..+|.+.|+|.+|+++.| .++|.++..
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa~~ 50 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWATA 50 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccccC
Confidence 346799999999999999999999999999999999865 455666543
Q ss_pred CCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHH
Q 013726 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 333 ~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~ka 410 (437)
......+. ....--+||+.|..+++-++|++.|.+| |+|..++|++| +++++|||||.|-+.++|+.|
T Consensus 51 p~nQsk~t---------~~~hfhvfvgdls~eI~~e~lr~aF~pF-GevS~akvirD~~T~KsKGYgFVSf~~k~dAEnA 120 (321)
T KOG0148|consen 51 PGNQSKPT---------SNQHFHVFVGDLSPEIDNEKLREAFAPF-GEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENA 120 (321)
T ss_pred cccCCCCc---------cccceeEEehhcchhcchHHHHHHhccc-cccccceEeecccCCcccceeEEeccchHHHHHH
Confidence 21111110 1113579999999999999999999996 99999999999 778999999999999999999
Q ss_pred HhhcCceeccCchhh
Q 013726 411 FIHTEFYILHNPSIA 425 (437)
Q Consensus 411 l~~~~~~~~~~~~i~ 425 (437)
+.++++-++..+.|.
T Consensus 121 I~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 121 IQQMNGQWLGRRTIR 135 (321)
T ss_pred HHHhCCeeeccceee
Confidence 999999888777664
No 33
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.5e-15 Score=151.30 Aligned_cols=79 Identities=32% Similarity=0.515 Sum_probs=71.1
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeE-eeee--eeEEe
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTM-LGFY--PVRVL 328 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~-l~Gr--~L~V~ 328 (437)
.+.+.|||+-|+..+||.+++++|++||.|++|+|.+|+.. ++|||||.|.+.|-|..|++ |||.. +.|. +|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 34688999999999999999999999999999999998865 89999999999999999999 99875 6665 78998
Q ss_pred ccCC
Q 013726 329 PSKT 332 (437)
Q Consensus 329 ~s~~ 332 (437)
++.+
T Consensus 202 FADt 205 (510)
T KOG0144|consen 202 FADT 205 (510)
T ss_pred eccc
Confidence 8753
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=3e-14 Score=129.82 Aligned_cols=152 Identities=18% Similarity=0.261 Sum_probs=119.2
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 333 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~ 333 (437)
..++|||+|||.++.+.+|.++|.+||.|..|.+...+ ....||||+|+++-+|+.|+. -+|..++|+.|.|+..+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 46889999999999999999999999999999885432 346799999999999999999 9999999999999998754
Q ss_pred CCCCCCC--CC--------C--CChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEe
Q 013726 334 IAPVNPT--FL--------P--RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF 401 (437)
Q Consensus 334 ~~~~~~~--~~--------p--r~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF 401 (437)
....... +. . +.-.........|.|.+||.+.+.+||+++..+. |.|-...+.+| |++.|+|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea-GdvCfadv~rD-----g~GvV~~ 157 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA-GDVCFADVQRD-----GVGVVEY 157 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh-CCeeeeeeecc-----cceeeee
Confidence 3111100 00 0 0000001123689999999999999999999996 99999988876 3788999
Q ss_pred CCHHHHHHHHhh
Q 013726 402 VMVIASSTLFIH 413 (437)
Q Consensus 402 ~s~e~A~kal~~ 413 (437)
...|+-+.|+..
T Consensus 158 ~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 158 LRKEDMKYAVRK 169 (241)
T ss_pred eehhhHHHHHHh
Confidence 888887666544
No 35
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.56 E-value=4.7e-14 Score=144.46 Aligned_cols=160 Identities=21% Similarity=0.220 Sum_probs=125.9
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccCCCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAI 334 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~~~~ 334 (437)
...-|.+++||+++|++||.++|+.|+ |.++.+.+......|-|||+|.++|++.+|++.+...+..+-|.|-.+....
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcc
Confidence 445688999999999999999999995 6777777765667899999999999999999999999999999998875332
Q ss_pred CCCCCC-CCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEE--EEEecc-CCCcceEEEEEeCCHHHHHHH
Q 013726 335 APVNPT-FLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR--LRLLGD-YHHSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 335 ~~~~~~-~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~--v~i~kd-~g~srGfAFVeF~s~e~A~ka 410 (437)
...... ..++. ......|.+++||+.+|++||.++|+.. +|.. +.++.+ .+++.|-|||+|++.+.|++|
T Consensus 88 ~d~~~~~~g~~s----~~~d~vVRLRGLPfscte~dI~~FFaGL--~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 88 ADWVMRPGGPNS----SANDGVVRLRGLPFSCTEEDIVEFFAGL--EIVPDGILLPMDQRGRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred ccccccCCCCCC----CCCCceEEecCCCccCcHHHHHHHhcCC--cccccceeeeccCCCCcccceEEEecCHHHHHHH
Confidence 211110 11111 1344689999999999999999999975 4444 345566 567999999999999999888
Q ss_pred HhhcCceeccC
Q 013726 411 FIHTEFYILHN 421 (437)
Q Consensus 411 l~~~~~~~~~~ 421 (437)
|......|.|.
T Consensus 162 l~rhre~iGhR 172 (510)
T KOG4211|consen 162 LGRHRENIGHR 172 (510)
T ss_pred HHHHHHhhccc
Confidence 88777666665
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.50 E-value=1.4e-13 Score=123.53 Aligned_cols=79 Identities=25% Similarity=0.480 Sum_probs=73.4
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++|+++|+++|++||.|.+|+++.|+.+ ++|||||+|.+.++|++|++ |++..|+|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999988765 59999999999999999998 9999999999999987
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 53
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.47 E-value=6.3e-13 Score=124.87 Aligned_cols=155 Identities=24% Similarity=0.355 Sum_probs=120.4
Q ss_pred cEEEEecCCccchHHHHHH----HHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 257 RTVYVSDIDQQVTEEQLAA----LFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~----~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
.||||.||+..+..++|+. +|++||.|..|.....+ ..+|-|||.|.+.+.|..|+. |+|..+-|++++|++++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-CccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 4999999999999999888 99999999998886443 258999999999999999999 99999999999999987
Q ss_pred CCCCCCCC---CCCCCCh---------------------------------hhhcccccEEEEEcCCccCCHHHHHHHhh
Q 013726 332 TAIAPVNP---TFLPRTE---------------------------------DEREMCARTIYCTNIDKKVTQADVKLFFE 375 (437)
Q Consensus 332 ~~~~~~~~---~~~pr~~---------------------------------~~~~~~~~tL~V~NLp~~vteedLrelF~ 375 (437)
....-... .+..+.. .....+..++++.|||.+++.+.+..+|+
T Consensus 89 s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~ 168 (221)
T KOG4206|consen 89 SDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFE 168 (221)
T ss_pred CccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHh
Confidence 54221110 1100000 11134567899999999999999999999
Q ss_pred hcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCc
Q 013726 376 SVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEF 416 (437)
Q Consensus 376 ~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~ 416 (437)
+| .....++++... .|.|||+|.+...|..|......
T Consensus 169 qf-~g~keir~i~~~---~~iAfve~~~d~~a~~a~~~lq~ 205 (221)
T KOG4206|consen 169 QF-PGFKEIRLIPPR---SGIAFVEFLSDRQASAAQQALQG 205 (221)
T ss_pred hC-cccceeEeccCC---CceeEEecchhhhhHHHhhhhcc
Confidence 95 888999887642 35999999998776555444443
No 38
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=5e-13 Score=127.85 Aligned_cols=167 Identities=20% Similarity=0.343 Sum_probs=132.5
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeE-eee--eeeEEe
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTM-LGF--YPVRVL 328 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~-l~G--r~L~V~ 328 (437)
.+.+.||||-|...-.|+|++.+|..||.|.+|.+.+.+.. ++|++||.|.+..+|..||. |+|.. +-| ..|.|+
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 35688999999999999999999999999999999988865 69999999999999999999 98865 333 356776
Q ss_pred ccCCCCC-------------------------------------------------------------------------
Q 013726 329 PSKTAIA------------------------------------------------------------------------- 335 (437)
Q Consensus 329 ~s~~~~~------------------------------------------------------------------------- 335 (437)
++.+...
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 6543100
Q ss_pred ----CCC----CC------------------C---------------------------CCCChh---------------
Q 013726 336 ----PVN----PT------------------F---------------------------LPRTED--------------- 347 (437)
Q Consensus 336 ----~~~----~~------------------~---------------------------~pr~~~--------------- 347 (437)
+.. +. + .+...+
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 000 00 0 000000
Q ss_pred ----------------------h-hcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeC
Q 013726 348 ----------------------E-REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFV 402 (437)
Q Consensus 348 ----------------------~-~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~ 402 (437)
. .....++|||-.||.+.++.+|...|-+| |.|.+.++..| ++.++.|+||.|+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PF-GhivSaKVFvDRATNQSKCFGFVSfD 335 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPF-GHIVSAKVFVDRATNQSKCFGFVSFD 335 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccc-cceeeeeeeehhccccccceeeEecC
Confidence 0 12346799999999999999999999996 99999999988 6779999999999
Q ss_pred CHHHHHHHHhhcCceeccC
Q 013726 403 MVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 403 s~e~A~kal~~~~~~~~~~ 421 (437)
++.+|++++..++++.++-
T Consensus 336 Np~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 336 NPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred CchhHHHHHHHhcchhhhh
Confidence 9999999999999886654
No 39
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=5.8e-13 Score=102.63 Aligned_cols=68 Identities=31% Similarity=0.550 Sum_probs=63.3
Q ss_pred EEEecCCccchHHHHHHHHhcCCCeeEEEEeeC-CCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeE
Q 013726 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD-PNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 326 (437)
Q Consensus 259 LfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d-~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~ 326 (437)
|||+|||.++|+++|+++|++||.|..+.+..+ ....+|+|||+|.+.++|.+|++ |+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999886 33469999999999999999999 999999999885
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.38 E-value=1.4e-11 Score=124.48 Aligned_cols=160 Identities=21% Similarity=0.243 Sum_probs=126.5
Q ss_pred CCcEEEEecCCccchHHHHHHHHh-cCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFV-GCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~-~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
..|.+||.|||++...++|+++|. ..|+|..|.+..|... ++|+|.|||+++|.+++|++ ||.+.+.|++|.|+.-+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346799999999999999999998 5799999999988865 69999999999999999999 99999999999998754
Q ss_pred CCCC-------------------------CCCC----------CCCCCChh-----------------------------
Q 013726 332 TAIA-------------------------PVNP----------TFLPRTED----------------------------- 347 (437)
Q Consensus 332 ~~~~-------------------------~~~~----------~~~pr~~~----------------------------- 347 (437)
.... ..+. .+.+++.+
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 3100 0000 00011000
Q ss_pred -h------hcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcC
Q 013726 348 -E------REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTE 415 (437)
Q Consensus 348 -~------~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~ 415 (437)
. ......++||.||.+.+..+.|++.|.- .|.|+.+.+-.| .|.++|||.++|..+-+|-.++...+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgm-AGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGM-AGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhcc-ceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhc
Confidence 0 0122458999999999999999999997 499999998777 67899999999999988866666555
No 41
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.37 E-value=8.7e-12 Score=117.70 Aligned_cols=155 Identities=26% Similarity=0.320 Sum_probs=115.9
Q ss_pred CcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCC--CCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~--~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
.++|||+|||..+|+++|+++|..||.|..+.+..++. .++|||||+|.+.++|..|+. ++|..+.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999998873 369999999999999999999 999999999999999542
Q ss_pred --CCCCCCC-----C---CCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCC--CcceEEEEE
Q 013726 333 --AIAPVNP-----T---FLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVE 400 (437)
Q Consensus 333 --~~~~~~~-----~---~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g--~srGfAFVe 400 (437)
....... . ...............+++.|++..++..++...|..+ |.+....+..... ......++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR-GDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccc-ccceeeeccCCCCCcccccccccc
Confidence 1100000 0 0011112224456799999999999999999999985 9997776665422 233344444
Q ss_pred eCCHHHHHHHH
Q 013726 401 FVMVIASSTLF 411 (437)
Q Consensus 401 F~s~e~A~kal 411 (437)
+.....+....
T Consensus 274 ~~~~~~~~~~~ 284 (306)
T COG0724 274 NEASKDALESN 284 (306)
T ss_pred hhHHHhhhhhh
Confidence 44444444433
No 42
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.36 E-value=1.6e-12 Score=132.47 Aligned_cols=78 Identities=26% Similarity=0.409 Sum_probs=70.5
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeee--eeeEEec
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGF--YPVRVLP 329 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~G--r~L~V~~ 329 (437)
..++|||+|||+.+|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..+.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4578999999999999999999999999999999988754 58999999999999999999 99999876 6888888
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
+..
T Consensus 272 a~~ 274 (346)
T TIGR01659 272 AEE 274 (346)
T ss_pred CCc
Confidence 753
No 43
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.35 E-value=3.9e-12 Score=123.31 Aligned_cols=77 Identities=26% Similarity=0.407 Sum_probs=71.8
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~~ 332 (437)
..++|||+|||+.+|+++|+++|+.||.|.+|++..++. ++|||||+|.++++|..||.|+|..|.|+.|.|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 357999999999999999999999999999999998864 46999999999999999999999999999999999764
No 44
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.5e-12 Score=112.41 Aligned_cols=81 Identities=30% Similarity=0.398 Sum_probs=73.8
Q ss_pred hhhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCC--CCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeE
Q 013726 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 326 (437)
Q Consensus 250 ~~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~--~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~ 326 (437)
.+.-..++||||+||++.++|++|.++|+.||.|..|.+-.|+. ++.|||||+|.+.++|..|++ ++|+.++.++|.
T Consensus 30 ~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 30 LEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred HHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence 34556789999999999999999999999999999998866664 479999999999999999999 999999999999
Q ss_pred Eecc
Q 013726 327 VLPS 330 (437)
Q Consensus 327 V~~s 330 (437)
+.+-
T Consensus 110 ~D~D 113 (153)
T KOG0121|consen 110 IDWD 113 (153)
T ss_pred eecc
Confidence 9884
No 45
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.34 E-value=2.5e-11 Score=113.78 Aligned_cols=164 Identities=18% Similarity=0.209 Sum_probs=118.4
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC---CceEEEEEEcCHHHHHHHHH-hcCeEee---eeee
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS---VLRFAFIEFTDEEGARAALN-LAGTMLG---FYPV 325 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~---s~GfaFVeF~~~e~A~~Al~-lng~~l~---Gr~L 325 (437)
...-|||||.+||.++...+|..+|..|-..+.+.+....+. -+-+||+.|.+...|.+|+. |||..++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 345699999999999999999999999866666655433221 24699999999999999999 9999985 6678
Q ss_pred EEeccCCCCCCCCCC--------------------C-------------------------------------------C
Q 013726 326 RVLPSKTAIAPVNPT--------------------F-------------------------------------------L 342 (437)
Q Consensus 326 ~V~~s~~~~~~~~~~--------------------~-------------------------------------------~ 342 (437)
++..++.+.....+. . .
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 887765432110000 0 0
Q ss_pred CCChh--h-------hcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhh
Q 013726 343 PRTED--E-------REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIH 413 (437)
Q Consensus 343 pr~~~--~-------~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~ 413 (437)
|.... + ......||||.||..++||++|+.+|+.| -....++|....|. ..||++|++.+.|..|+.+
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~-~gf~~l~~~~~~g~--~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRY-PGFHILKIRARGGM--PVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhC-CCceEEEEecCCCc--ceEeecHHHHHHHHHHHHH
Confidence 00000 0 01123489999999999999999999996 66677777655453 3799999999999888877
Q ss_pred cCceec
Q 013726 414 TEFYIL 419 (437)
Q Consensus 414 ~~~~~~ 419 (437)
..++++
T Consensus 268 lqg~~~ 273 (284)
T KOG1457|consen 268 LQGNLL 273 (284)
T ss_pred hhccee
Confidence 666543
No 46
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.30 E-value=8.1e-11 Score=116.35 Aligned_cols=165 Identities=18% Similarity=0.248 Sum_probs=124.7
Q ss_pred hhccCCcEEEEecCCccchHHHHHHHHhcCCCee--------EEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEe
Q 013726 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV--------DCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTML 320 (437)
Q Consensus 251 ~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~--------~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l 320 (437)
.++...+.|||.|||.++|.+++.++|+.||.|. .|++-++..+ -+|-|.|.|-..+++.-|++ |++..+
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3455567799999999999999999999999875 3677676654 49999999999999999999 999999
Q ss_pred eeeeeEEeccCCCCCCC----------CCC-------------CCCCC-hhhhcccccEEEEEcC----CccCC------
Q 013726 321 GFYPVRVLPSKTAIAPV----------NPT-------------FLPRT-EDEREMCARTIYCTNI----DKKVT------ 366 (437)
Q Consensus 321 ~Gr~L~V~~s~~~~~~~----------~~~-------------~~pr~-~~~~~~~~~tL~V~NL----p~~vt------ 366 (437)
.|+.|+|..++-..... ... +.|.. ...+....++|.++|+ .+..+
T Consensus 209 rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~d 288 (382)
T KOG1548|consen 209 RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLND 288 (382)
T ss_pred cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHH
Confidence 99999998875321111 000 12222 1122445689999998 22334
Q ss_pred -HHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCcee
Q 013726 367 -QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYI 418 (437)
Q Consensus 367 -eedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~ 418 (437)
++||++-.++ ||.|.+|.|.-. ++.|.+-|.|.+.++|..++..+++-.
T Consensus 289 lkedl~eec~K-~G~v~~vvv~d~--hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 289 LKEDLTEECEK-FGQVRKVVVYDR--HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred HHHHHHHHHHH-hCCcceEEEecc--CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 4666777888 599999988643 467899999999999999888777643
No 47
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.30 E-value=1.2e-11 Score=96.23 Aligned_cols=68 Identities=35% Similarity=0.568 Sum_probs=60.9
Q ss_pred EEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeE
Q 013726 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 326 (437)
Q Consensus 259 LfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~ 326 (437)
|||+|||+++++++|+++|+.+|.|..+++..++.. ++|+|||+|.+.++|.+|+. +++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999987653 48999999999999999999 788999999874
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.28 E-value=1.3e-11 Score=110.87 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=65.0
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
.+++|||+|||+++|+++|+++|++| |.|.+|++++| +++++|||||+|++.++|++|+...+...+... .|.|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHF-GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45799999999999999999999995 99999999988 578999999999999999999986655433333 46776
Q ss_pred hh
Q 013726 428 EE 429 (437)
Q Consensus 428 ~~ 429 (437)
.+
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 54
No 49
>PLN03213 repressor of silencing 3; Provisional
Probab=99.28 E-value=3.5e-12 Score=130.49 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=70.0
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCH--HHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE--EGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~--e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
.....+||||||++.+|+++|+.+|..||.|.+|.|++ .+++|||||+|... .++.+|+. |||..+.|+.|+|..
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34557899999999999999999999999999999994 34599999999987 78999999 999999999999998
Q ss_pred cC
Q 013726 330 SK 331 (437)
Q Consensus 330 s~ 331 (437)
++
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 76
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.28 E-value=1.3e-11 Score=95.00 Aligned_cols=68 Identities=21% Similarity=0.348 Sum_probs=61.2
Q ss_pred EEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccCchh
Q 013726 356 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424 (437)
Q Consensus 356 L~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~i 424 (437)
|||+|||.++|+++|+++|++| |.|..+.+..+ .+..+|+|||+|.+.++|++|+...+.+.+++..|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF-GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT-STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh-hhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 7999999999999999999995 99999999996 77899999999999999999999888777666443
No 51
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=2.2e-11 Score=129.54 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=120.9
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCce-EEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~G-faFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
.+...+.++|+|||..+..++|.++|..||+|..+-+. +. | -++|+|.++.+|..|++ |....+...++.+.+
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cc---cceeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 34556789999999999999999999999999998443 32 3 49999999999999999 998888888888877
Q ss_pred cCCCCCCCCCC-----CCC--------------------CChh-----------hhcccccEEEEEcCCccCCHHHHHHH
Q 013726 330 SKTAIAPVNPT-----FLP--------------------RTED-----------EREMCARTIYCTNIDKKVTQADVKLF 373 (437)
Q Consensus 330 s~~~~~~~~~~-----~~p--------------------r~~~-----------~~~~~~~tL~V~NLp~~vteedLrel 373 (437)
+...+-...+. ..+ .+.+ ......++|||+||+++.|.++|..+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 64332220000 000 0000 01122344999999999999999999
Q ss_pred hhhcCCceEEEEEeccC-C--C--cceEEEEEeCCHHHHHHHHhhcC
Q 013726 374 FESVCGEVYRLRLLGDY-H--H--STRIAFVEFVMVIASSTLFIHTE 415 (437)
Q Consensus 374 F~~f~G~I~~v~i~kd~-g--~--srGfAFVeF~s~e~A~kal~~~~ 415 (437)
|... |.|.++.|.+.. . + +.|||||+|.+.++|++|+..+.
T Consensus 536 F~k~-G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq 581 (725)
T KOG0110|consen 536 FSKQ-GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ 581 (725)
T ss_pred HHhc-CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhc
Confidence 9995 999999998762 2 1 66999999999999999988865
No 52
>smart00362 RRM_2 RNA recognition motif.
Probab=99.25 E-value=3.7e-11 Score=91.22 Aligned_cols=71 Identities=41% Similarity=0.619 Sum_probs=65.7
Q ss_pred EEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 258 tLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
+|||+|||..+++++|+++|.+||.|..+.+..++..++|+|||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999988775568999999999999999999 99999999998873
No 53
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=4.7e-11 Score=117.29 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=74.4
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
...+.|+|.|||+...|.||+..|.+||.|.+|.|+.+..+++|||||.|++.++|++|-+ |+|..+.||+|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3457899999999999999999999999999999999998999999999999999999998 999999999999998753
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.24 E-value=2.5e-11 Score=126.00 Aligned_cols=158 Identities=22% Similarity=0.283 Sum_probs=116.7
Q ss_pred EEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCCCC
Q 013726 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIA 335 (437)
Q Consensus 259 LfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~~~ 335 (437)
|||+||.+++++++|+.+|+.||.|..|.+..|..+ ++|||||+|.+.++|.+|++ |||..|.|+.|+|........
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 999999999999999999999999999999998744 69999999999999999998 999999999999976432111
Q ss_pred CCCC--C----------CC----------------------CCC------------------------hhhhc-------
Q 013726 336 PVNP--T----------FL----------------------PRT------------------------EDERE------- 350 (437)
Q Consensus 336 ~~~~--~----------~~----------------------pr~------------------------~~~~~------- 350 (437)
.... . .. +.. .....
T Consensus 361 ~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~ 440 (549)
T KOG0147|consen 361 TKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFD 440 (549)
T ss_pred cccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccC
Confidence 1000 0 00 000 00001
Q ss_pred ccccEEEEEcC--CccCC--------HHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 351 MCARTIYCTNI--DKKVT--------QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 351 ~~~~tL~V~NL--p~~vt--------eedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
.++.++.++|+ |.+.| .+||.+-++++ |.|..|.+-+. +-|+.||.|.+.+.|.+|....|+-+..
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~-g~v~hi~vd~n---s~g~VYvrc~s~~~A~~a~~alhgrWF~ 516 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKH-GKVCHIFVDKN---SAGCVYVRCPSAEAAGTAVKALHGRWFA 516 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhc-CCeeEEEEccC---CCceEEEecCcHHHHHHHHHHHhhhhhc
Confidence 23445666666 32333 27888889996 99999887654 3379999999999998888777775443
No 55
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.24 E-value=3.9e-11 Score=114.80 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=71.6
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccCCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTA 333 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~~~ 333 (437)
...||||+||++.+|+++|+++|+.||.|.+|++++|.. ..|||||+|.++++|..|+.|+|..|.+++|.|.+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e-t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE-YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC-cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCccc
Confidence 347999999999999999999999999999999998854 458999999999999999999999999999999987643
No 56
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=1.6e-11 Score=116.17 Aligned_cols=152 Identities=22% Similarity=0.278 Sum_probs=118.4
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCCCC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIA 335 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~~~ 335 (437)
..+||++||+.+.+.+|..+|..||.+..+.+. .||+||+|.+.-+|..|+. +++..|.|-.+.|.++.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee------cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 358999999999999999999999999998885 3799999999999999999 999999998888888763211
Q ss_pred CC-CCC--CC---CCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHH
Q 013726 336 PV-NPT--FL---PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASST 409 (437)
Q Consensus 336 ~~-~~~--~~---pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~k 409 (437)
.. .+. +. .+...........+.+.|++..+.+.+|.+.|.++ |++....+ .++++||+|.+.++|.+
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~-g~~~~~~~------~~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA-GEVTYVDA------RRNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc-CCCchhhh------hccccceeehhhhhhhh
Confidence 11 000 00 01111113345789999999999999999999996 99966554 45699999999999998
Q ss_pred HHhhcCceeccC
Q 013726 410 LFIHTEFYILHN 421 (437)
Q Consensus 410 al~~~~~~~~~~ 421 (437)
++...+...+..
T Consensus 149 a~~~l~~~~~~~ 160 (216)
T KOG0106|consen 149 ALEKLDGKKLNG 160 (216)
T ss_pred cchhccchhhcC
Confidence 888776644433
No 57
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2e-11 Score=110.70 Aligned_cols=74 Identities=28% Similarity=0.433 Sum_probs=69.5
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
..+.|||+||+..+++.||..+|..||++.+|.|...+. |||||||+++.+|..|+. |+|..|.|..|.|+.++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 357899999999999999999999999999999987654 999999999999999999 99999999999999986
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=5.3e-11 Score=112.95 Aligned_cols=77 Identities=27% Similarity=0.379 Sum_probs=74.1
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
+..||.|.||+.++++++|+++|..||.|.+|.+.+|+.+ ++|||||.|.+.++|.+|+. |||.-++.--|.|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 6789999999999999999999999999999999999988 49999999999999999999 99999999999999986
No 59
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=3.3e-11 Score=113.83 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=69.6
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
.-++||||+|++.++.+.|++.|++||+|+++.++.|+.+ ++|||||.|++.++|.+|++-..-.|+||+-.++.+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 3467999999999999999999999999999999999976 6999999999999999999955556899998888764
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=8.3e-10 Score=109.76 Aligned_cols=78 Identities=21% Similarity=0.398 Sum_probs=71.0
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
..-..|||..+.++.+++||+..|+.||+|++|++.+++.+ .+||||++|.+..+...|+. ||-+.++|..|+|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 34467999999999999999999999999999999988865 59999999999999999999 9999999999999664
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
-
T Consensus 288 v 288 (544)
T KOG0124|consen 288 V 288 (544)
T ss_pred c
Confidence 3
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.12 E-value=2.2e-10 Score=89.03 Aligned_cols=65 Identities=25% Similarity=0.363 Sum_probs=56.2
Q ss_pred EEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 356 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 356 L~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
|||+|||.++++++|+++|+.+ |.|..+++..+ .+.++|+|||+|.+.++|.+|+...+...+++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~-g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF-GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS-SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 7999999999999999999995 99999999987 56789999999999999999999888554444
No 62
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.10 E-value=6.6e-10 Score=84.67 Aligned_cols=72 Identities=44% Similarity=0.648 Sum_probs=66.0
Q ss_pred EEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 258 tLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.. +.|+|||+|.+.++|..|+. +++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999877653 58999999999999999999 999999999998863
No 63
>smart00360 RRM RNA recognition motif.
Probab=99.07 E-value=5.1e-10 Score=84.43 Aligned_cols=68 Identities=38% Similarity=0.589 Sum_probs=61.9
Q ss_pred EecCCccchHHHHHHHHhcCCCeeEEEEeeCCC--CCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 261 VSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 261 VgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~--~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
|+|||..+++++|+++|++||.|..+.+..++. .++|+|||+|.+.++|.+|+. +++..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999987754 358999999999999999999 99999999998873
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.07 E-value=3.2e-10 Score=110.04 Aligned_cols=76 Identities=24% Similarity=0.406 Sum_probs=63.9
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc-hhhhhhhh
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP-SIAWLEEF 430 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~-~i~~~~~~ 430 (437)
.++|||+|||+.+|+++|+++|+. ||.|.+|+|+.+.. ++|||||+|.+.++|.+|+...+..+...+ .|.+++++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 479999999999999999999997 69999999998753 579999999999999888876666555554 46666644
No 65
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.06 E-value=2.1e-10 Score=106.53 Aligned_cols=79 Identities=25% Similarity=0.369 Sum_probs=73.9
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
...+|.|-||.+-++.++|+.+|++||.|-+|.|..|+.+ ++|||||-|.+..+|+.|++ |+|.+|+|+.|.|+.++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4578999999999999999999999999999999999976 69999999999999999999 99999999999998876
Q ss_pred CC
Q 013726 332 TA 333 (437)
Q Consensus 332 ~~ 333 (437)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 43
No 66
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=5.1e-10 Score=93.62 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=70.0
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
++..+-|||+|||+++|.+++.++|.+||.|..+++-..+. .+|.|||.|++..+|.+|+. |+|..+.++.|.|.+..
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~-TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE-TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC-cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 44668899999999999999999999999999999954433 47999999999999999999 99999999999998753
No 67
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.04 E-value=3.9e-09 Score=106.47 Aligned_cols=155 Identities=23% Similarity=0.278 Sum_probs=118.5
Q ss_pred CcEEEEecCCcc-chHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCC
Q 013726 256 RRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 333 (437)
Q Consensus 256 ~rtLfVgNLp~~-~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~ 333 (437)
...|.|.||... +|.+-|..+|.-||.|.+|+|..+++ --|.|.+.+...|.-|++ |+|..+.|++|+|.+++..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 577999999875 89999999999999999999988765 479999999999999999 9999999999999998743
Q ss_pred CCCCCCC----------C----CCCChh-------hhcccccEEEEEcCCccCCHHHHHHHhhhcCCce-EEEEEeccCC
Q 013726 334 IAPVNPT----------F----LPRTED-------EREMCARTIYCTNIDKKVTQADVKLFFESVCGEV-YRLRLLGDYH 391 (437)
Q Consensus 334 ~~~~~~~----------~----~pr~~~-------~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I-~~v~i~kd~g 391 (437)
....... + ..|-.+ .-..++.+|.+.|+|.+++|||++++|..- |-. +..+.. +
T Consensus 374 ~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~-g~~vkafkff---~ 449 (492)
T KOG1190|consen 374 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEP-GGQVKAFKFF---Q 449 (492)
T ss_pred cccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcC-CceEEeeeec---C
Confidence 2111100 0 001100 012456799999999999999999999986 644 443333 3
Q ss_pred CcceEEEEEeCCHHHHHHHHhhcCce
Q 013726 392 HSTRIAFVEFVMVIASSTLFIHTEFY 417 (437)
Q Consensus 392 ~srGfAFVeF~s~e~A~kal~~~~~~ 417 (437)
+.+-+|.+.+++.|+|..++...|.+
T Consensus 450 kd~kmal~q~~sveeA~~ali~~hnh 475 (492)
T KOG1190|consen 450 KDRKMALPQLESVEEAIQALIDLHNH 475 (492)
T ss_pred CCcceeecccCChhHhhhhccccccc
Confidence 34459999999999996666655443
No 68
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=8.5e-10 Score=107.40 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=73.3
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
...-+||||+-|+.+++|..|+..|+.||+|+.++++.|..+ ++|||||+|.++-+...|.+ .+|..|+|+.|.|..
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 355689999999999999999999999999999999999865 69999999999999999999 999999999999987
Q ss_pred cC
Q 013726 330 SK 331 (437)
Q Consensus 330 s~ 331 (437)
-.
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 54
No 69
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=4.7e-09 Score=108.75 Aligned_cols=165 Identities=21% Similarity=0.262 Sum_probs=115.3
Q ss_pred hhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-----Cce---EEEEEEcCHHHHHHHHH-hc----C
Q 013726 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-----VLR---FAFIEFTDEEGARAALN-LA----G 317 (437)
Q Consensus 251 ~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-----s~G---faFVeF~~~e~A~~Al~-ln----g 317 (437)
+...-.+.||||+||++++|++|...|..||.+. |.+....+. ++| |+|+.|+++.++..-+. +. +
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~ 332 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGN 332 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccc
Confidence 3455678899999999999999999999999864 555432211 355 99999999888877665 32 1
Q ss_pred eEe-------eeeeeEEeccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-
Q 013726 318 TML-------GFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD- 389 (437)
Q Consensus 318 ~~l-------~Gr~L~V~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd- 389 (437)
..| ..+.++|.+.... +..|. .+....-++.+||||++||..++.++|..+|+..||.|..+-|-.|
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~la----Ds~fv-~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~ 407 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLA----DSDFV-LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP 407 (520)
T ss_pred eEEEEecCcccccceeEEeeEec----cchhh-hccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc
Confidence 111 1112333222110 00111 1111224456899999999999999999999988899999999888
Q ss_pred -CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 390 -YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 390 -~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..-++|-|=|.|.+..+-.+|+...-.-+.|.
T Consensus 408 k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~ 440 (520)
T KOG0129|consen 408 KLKYPKGAGRVTFSNQQAYIKAISARFVQLDHT 440 (520)
T ss_pred ccCCCCCcceeeecccHHHHHHHhhheEEEecc
Confidence 33499999999999998888877655444444
No 70
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=8.5e-10 Score=115.70 Aligned_cols=171 Identities=20% Similarity=0.242 Sum_probs=126.6
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
......+||++||...++.++.++...||++...+++.+..+ ++||||.+|.+......|+. |||..++++.|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 345567999999999999999999999999999999988874 69999999999999999999 999999999999988
Q ss_pred cCCCCCCCCCCCC---------CCC-hhhhcccccEEEEEcC--CccC-CH-------HHHHHHhhhcCCceEEEEEecc
Q 013726 330 SKTAIAPVNPTFL---------PRT-EDEREMCARTIYCTNI--DKKV-TQ-------ADVKLFFESVCGEVYRLRLLGD 389 (437)
Q Consensus 330 s~~~~~~~~~~~~---------pr~-~~~~~~~~~tL~V~NL--p~~v-te-------edLrelF~~f~G~I~~v~i~kd 389 (437)
+-.+......... +.. ......++..|++.|+ |.++ ++ |+++.-+.+| |.|.+|.++++
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~-g~v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKF-GAVRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhccc-CceeEEecCCC
Confidence 6543222211111 110 1111334556666666 2222 23 4455555674 99999999998
Q ss_pred -CC----CcceEEEEEeCCHHHHHHHHhhcCceeccCchh
Q 013726 390 -YH----HSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424 (437)
Q Consensus 390 -~g----~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~i 424 (437)
.. -..|-.||+|.+.++|++|.+..++-.-.+.++
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 22 267889999999999999988887765555443
No 71
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=6.3e-10 Score=105.72 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=67.3
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCch--hhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPS--IAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~--i~~~ 427 (437)
..++|.|.||+.++++++|++||.+| |.|.+|.|.+| +|.++|||||.|.+.++|.+|+...++|.-.|-. ++|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~f-g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPF-GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhcc-CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 45799999999999999999999996 99999999998 7889999999999999999999998888665532 5665
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 267 k 267 (270)
T KOG0122|consen 267 K 267 (270)
T ss_pred C
Confidence 4
No 72
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.1e-09 Score=103.79 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=62.9
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP 422 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~ 422 (437)
.-++|||+||+.+++.++|+++|++| |+|....|+.| +|+++|||||+|.+.++|.+|+...+-.|-+..
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqf-GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~ 82 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQF-GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRK 82 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHh-CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccc
Confidence 34899999999999999999999996 99999999988 788999999999999999999988877665543
No 73
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1e-10 Score=106.68 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=73.9
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
.++.-|||||||+..||-+|.-+|++||+|+.|.+++|+++ ++||||+.|+++-+..-|+. |||..|.||.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45678999999999999999999999999999999999987 59999999999999999999 9999999999999886
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 43
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=98.95 E-value=3e-09 Score=80.52 Aligned_cols=66 Identities=24% Similarity=0.304 Sum_probs=57.9
Q ss_pred EEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 355 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 355 tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
+|+|+|||..+++++|+++|+++ |.|..+.+..+.+.++|+|||+|.+.++|++|+...+....++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~-g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF-GPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc-CCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 58999999999999999999995 9999999988777788999999999999999988776544333
No 75
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.93 E-value=3.2e-09 Score=101.81 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=61.4
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCch
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPS 423 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~ 423 (437)
...+|+|+||++.+|++||+++|+. ||+|.+|+|++| +..+|||||+|++.++|..|+..++.-++..++
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~~D-~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I 73 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEIIRS-GEYACTAYVTFKDAYALETAVLLSGATIVDQRV 73 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEecC-CCcceEEEEEECCHHHHHHHHhcCCCeeCCceE
Confidence 3479999999999999999999997 799999999988 445689999999999999998888777666653
No 76
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.93 E-value=1.4e-07 Score=94.52 Aligned_cols=166 Identities=14% Similarity=0.116 Sum_probs=127.4
Q ss_pred ccCCcEEEEecCCcc-chHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~-~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
......++|-+|... ++-+.|-++|..||.|..|++++.+. |.|.|++.+..+.++|+. ||+..+.|.+|.|+.+
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 345678999999986 66788999999999999999987665 899999999999999999 9999999999999999
Q ss_pred CCCCCCCCCCC--------------------CCCCh-hh--hcccccEEEEEcCCccCCHHHHHHHhhhcCCc-eEEEEE
Q 013726 331 KTAIAPVNPTF--------------------LPRTE-DE--REMCARTIYCTNIDKKVTQADVKLFFESVCGE-VYRLRL 386 (437)
Q Consensus 331 ~~~~~~~~~~~--------------------~pr~~-~~--~~~~~~tL~V~NLp~~vteedLrelF~~f~G~-I~~v~i 386 (437)
++........| ..... .+ -..++++|..-|.|..+||+.|.++|... +. -.++++
T Consensus 361 kQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek-~v~~~svkv 439 (494)
T KOG1456|consen 361 KQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEK-DVPPTSVKV 439 (494)
T ss_pred cccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhc-CCCcceEEe
Confidence 86533221111 00000 00 13467899999999999999999999975 42 355666
Q ss_pred eccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc
Q 013726 387 LGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP 422 (437)
Q Consensus 387 ~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~ 422 (437)
..-......-+.+||++.++|..+|...+.|.+..|
T Consensus 440 Fp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 440 FPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred ecccccccccceeeeehHHHHHHHHHHhccccccCC
Confidence 544322333689999999999888888887776664
No 77
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.91 E-value=2.1e-09 Score=111.87 Aligned_cols=75 Identities=36% Similarity=0.518 Sum_probs=72.1
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
++|||||||+++++++|.++|+..|.|.+++++.|+.+ ++||||++|.+.++|..|++ |||..+.|++|+|.++.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 88999999999999999999999999999999999976 59999999999999999999 99999999999999865
No 78
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=2.2e-09 Score=93.00 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=64.2
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCchh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~i 424 (437)
...++||||+||.+.++||+|.++|++ ||+|..|.+--| +..+-|||||+|-+.++|..|+...+...+....|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 446789999999999999999999998 899999988777 34599999999999999999988887776666544
No 79
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.89 E-value=2.1e-09 Score=107.52 Aligned_cols=161 Identities=15% Similarity=0.164 Sum_probs=115.3
Q ss_pred CcEEEEecCCccchHHHHHHHHhc----CCCeeEEEEeeCCC-CCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVG----CGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~----~G~I~~vri~~d~~-~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
.-.|..++||+++|+.++.++|.. -|....+-++..++ ...|-|||.|..+++|+.||.-+...++-|-|.+-.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345888999999999999999963 13445666665544 4689999999999999999997777787777777665
Q ss_pred CCC-------------CCC-CCCCCC---CCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEE--EEEecc-C
Q 013726 331 KTA-------------IAP-VNPTFL---PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR--LRLLGD-Y 390 (437)
Q Consensus 331 ~~~-------------~~~-~~~~~~---pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~--v~i~kd-~ 390 (437)
..+ ..+ ...... |...-.......+|.+++||++++.|||.++|..|--.|.. |.+..+ .
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 321 000 000001 11111112235799999999999999999999987445555 666665 7
Q ss_pred CCcceEEEEEeCCHHHHHHHHhhcCc
Q 013726 391 HHSTRIAFVEFVMVIASSTLFIHTEF 416 (437)
Q Consensus 391 g~srGfAFVeF~s~e~A~kal~~~~~ 416 (437)
|++.|-|||+|.+.++|.+|....|.
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk 346 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHK 346 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHH
Confidence 88999999999999999666555443
No 80
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=2.2e-09 Score=105.71 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=61.3
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
....+.|+|.|||+..-+.||+.+|++| |.|.+|.|+.+...+||||||+|++.+||++|-+..|+-.+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kf-G~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE 162 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKF-GKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE 162 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhh-CceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee
Confidence 4456899999999999999999999996 999999999886669999999999999998887776664333
No 81
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=3.1e-09 Score=92.84 Aligned_cols=75 Identities=23% Similarity=0.311 Sum_probs=70.7
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCC--ceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSV--LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s--~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
-.|||.++...+|+++|.+.|..||+|+.+.+-.|+.++ +|||+|+|.+.+.|++|+. +||..|.|..|.|.|+-
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 459999999999999999999999999999998888774 9999999999999999999 99999999999999864
No 82
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2e-09 Score=100.85 Aligned_cols=80 Identities=34% Similarity=0.437 Sum_probs=73.8
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...+|||||+|..++|+.-|...|-.||.|..+.++.|-.+ .+|||||+|...|+|.+|+. ||+..|.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35689999999999999999999999999999999887654 69999999999999999999 9999999999999998
Q ss_pred CCC
Q 013726 331 KTA 333 (437)
Q Consensus 331 ~~~ 333 (437)
+..
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 643
No 83
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=4.3e-10 Score=105.26 Aligned_cols=153 Identities=22% Similarity=0.274 Sum_probs=119.0
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
+..+||||+|+...++++-|.++|-+.|+|..|.|..++.....||||.|.++-+..-|+. +||..+.+.++++.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r-- 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR-- 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc--
Confidence 3458999999999999999999999999999999988777655599999999999999999 9999999998887653
Q ss_pred CCCCCCCCCCCCChhhhcccccEEEEEc----CCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHH
Q 013726 333 AIAPVNPTFLPRTEDEREMCARTIYCTN----IDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIAS 407 (437)
Q Consensus 333 ~~~~~~~~~~pr~~~~~~~~~~tL~V~N----Lp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A 407 (437)
.+| |+..++++.+...|+.. |.+.-+++..+ +|..+.++|+.+-...+.
T Consensus 85 -------------------------~G~shapld~r~~~ei~~~v~s~a-~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 85 -------------------------CGNSHAPLDERVTEEILYEVFSQA-GPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred -------------------------cCCCcchhhhhcchhhheeeeccc-CCCCCccccccccCCccCccchhhhhhhcC
Confidence 233 66778899999999985 99999999988 667888999887655444
Q ss_pred HHHHhhcCceeccCchhhhhhhhcCCc
Q 013726 408 STLFIHTEFYILHNPSIAWLEEFSGEY 434 (437)
Q Consensus 408 ~kal~~~~~~~~~~~~i~~~~~~sg~~ 434 (437)
-.++.....+-.-.+.+-+...+.|+-
T Consensus 139 P~~~~~y~~l~~~~~~~~~ggk~Gg~~ 165 (267)
T KOG4454|consen 139 PFALDLYQGLELFQKKVTIGGKQGGKQ 165 (267)
T ss_pred cHHhhhhcccCcCCCCcccccccCCCc
Confidence 444443333333333444444455543
No 84
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.86 E-value=7.8e-09 Score=77.29 Aligned_cols=55 Identities=33% Similarity=0.479 Sum_probs=49.6
Q ss_pred HHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 273 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 273 L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
|.++|++||.|.++.+..+. .++|||+|.+.++|..|++ |||..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997665 4799999999999999999 9999999999999874
No 85
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=1.3e-08 Score=85.29 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=59.6
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..+.|||+|||+.+|.++..++|.+| |.|..|+|-... ..+|-|||.|++..+|++|..|..+|-..+
T Consensus 17 vnriLyirNLp~~ITseemydlFGky-g~IrQIRiG~~k-~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKY-GTIRQIRIGNTK-ETRGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcc-cceEEEEecCcc-CcCceEEEEehHhhhHHHHHHHhcccccCC
Confidence 35799999999999999999999995 999999996543 368999999999999999999988875544
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=1.5e-08 Score=106.38 Aligned_cols=163 Identities=21% Similarity=0.284 Sum_probs=127.9
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcC-----------C-CeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeee
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGC-----------G-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGF 322 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~-----------G-~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~G 322 (437)
..+.++|+++|+.++++.+..+|..- | .+..|.+...+ +|+|++|.+.+.|..|+.+++..+.|
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~----nfa~ie~~s~~~at~~~~~~~~~f~g 249 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK----NFAFIEFRSISEATEAMALDGIIFEG 249 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc----cceeEEecCCCchhhhhcccchhhCC
Confidence 44679999999999999999999743 2 36777775554 59999999999999999999999999
Q ss_pred eeeEEeccCCCCCCCCCCC--------CCCCh-hhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CC
Q 013726 323 YPVRVLPSKTAIAPVNPTF--------LPRTE-DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YH 391 (437)
Q Consensus 323 r~L~V~~s~~~~~~~~~~~--------~pr~~-~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g 391 (437)
.++++...........-.. ..... ........+++|+|||..+++.+++++.+.| |.+...++.++ .|
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~f-g~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSF-GPLKAFRLVKDSATG 328 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhc-ccchhheeecccccc
Confidence 9988866543322211110 11011 1123456799999999999999999999995 99999999998 56
Q ss_pred CcceEEEEEeCCHHHHHHHHhhcCceeccCc
Q 013726 392 HSTRIAFVEFVMVIASSTLFIHTEFYILHNP 422 (437)
Q Consensus 392 ~srGfAFVeF~s~e~A~kal~~~~~~~~~~~ 422 (437)
.++||||.+|.+......|.++.+++.+...
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 8999999999999988888888888777744
No 87
>smart00360 RRM RNA recognition motif.
Probab=98.77 E-value=2.1e-08 Score=75.47 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=53.5
Q ss_pred EEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 358 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 358 V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
|+|||..+++++|+++|+++ |.|..+.+..+ .+.++|+|||+|.+.++|.+|+...+....
T Consensus 1 i~~l~~~~~~~~l~~~f~~~-g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF-GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh-CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 57999999999999999995 99999999887 467899999999999999999887764433
No 88
>smart00361 RRM_1 RNA recognition motif.
Probab=98.75 E-value=3.4e-08 Score=77.56 Aligned_cols=58 Identities=26% Similarity=0.281 Sum_probs=50.6
Q ss_pred HHHHHHHHh----cCCCeeEEE-EeeCC----CCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEE
Q 013726 270 EEQLAALFV----GCGQVVDCR-ICGDP----NSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (437)
Q Consensus 270 ee~L~~~F~----~~G~I~~vr-i~~d~----~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V 327 (437)
+++|+++|+ .||.|.++. +..++ ..++|||||+|.+.++|.+|+. |||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888898 999999995 55554 3369999999999999999999 9999999999876
No 89
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.75 E-value=4.1e-08 Score=74.65 Aligned_cols=66 Identities=26% Similarity=0.336 Sum_probs=57.7
Q ss_pred EEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 355 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 355 tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
+|+|+|||..+++++|+++|+.+ |.|..+.+..+ .+.++|+|||+|.+.++|..|+...+....++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~-g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~ 67 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF-GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG 67 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc-CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 48999999999999999999995 99999999987 34678999999999999999988877764443
No 90
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=2.8e-08 Score=96.99 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=62.8
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
.+-+||||.-|+++++|..|+..|+.| |.|+.|+|++| +|+++|||||+|++..+..+|..+.++..+..
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~Y-G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKY-GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhc-CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 456899999999999999999999995 99999999999 89999999999999999988888877655443
No 91
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.71 E-value=4.2e-08 Score=92.51 Aligned_cols=68 Identities=28% Similarity=0.370 Sum_probs=61.0
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..+|||+|||.++|+++|+++|.++ |.|..+.+..+ .+.++|||||+|.+.++|..|+...+...+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~-g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~ 184 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF-GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG 184 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc-CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC
Confidence 5899999999999999999999995 99999999988 58899999999999999999988888544433
No 92
>PLN03213 repressor of silencing 3; Provisional
Probab=98.67 E-value=6.5e-08 Score=99.66 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=53.3
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCH--HHHHHHHhhcC
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMV--IASSTLFIHTE 415 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~--e~A~kal~~~~ 415 (437)
....+|||+||++++|++||+.+|++| |.|.+|.|++.+| ||||||+|.+. .++.+|+...+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeF-GsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLN 71 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPM-GTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYN 71 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhc
Confidence 345799999999999999999999995 9999999998777 99999999987 55666666433
No 93
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.65 E-value=2e-07 Score=96.38 Aligned_cols=165 Identities=20% Similarity=0.193 Sum_probs=120.0
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeE-EEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVD-CRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~-vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~~ 332 (437)
....|.+++||+.+|++||.++|+..-.|.. +.++.+... +.|-|||.|++.+.|++||.-+...|+.+-|.|-.+..
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHH
Confidence 4567999999999999999999998755544 445555443 68999999999999999999777788888888865421
Q ss_pred C-----C------CC----------CCC----------------------------------C------C-------CCC
Q 013726 333 A-----I------AP----------VNP----------------------------------T------F-------LPR 344 (437)
Q Consensus 333 ~-----~------~~----------~~~----------------------------------~------~-------~pr 344 (437)
. . .. .+. . + .+.
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~ 261 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPV 261 (510)
T ss_pred HHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCC
Confidence 0 0 00 000 0 0 000
Q ss_pred C-----hh-----hh-cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHh
Q 013726 345 T-----ED-----ER-EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFI 412 (437)
Q Consensus 345 ~-----~~-----~~-~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~ 412 (437)
. .. .. ......++.++||+..++.+|.++|+. .....|.|-.. +|+..|-|+|+|.|.++|..|+.
T Consensus 262 ~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFsp--l~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 262 SSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSP--LNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCC--CCceeEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0 00 00 111256889999999999999999996 46667777665 78899999999999999999988
Q ss_pred hcCceeccC
Q 013726 413 HTEFYILHN 421 (437)
Q Consensus 413 ~~~~~~~~~ 421 (437)
....-+.|+
T Consensus 340 kd~anm~hr 348 (510)
T KOG4211|consen 340 KDGANMGHR 348 (510)
T ss_pred cCCcccCcc
Confidence 877666555
No 94
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=3e-08 Score=95.45 Aligned_cols=81 Identities=21% Similarity=0.440 Sum_probs=75.1
Q ss_pred hhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEE
Q 013726 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (437)
Q Consensus 251 ~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V 327 (437)
++..+.++|||-.||.+.++.||...|-.||.|.+.++..|+.+ +++||||.|.++.+|+.||. |||..|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45567899999999999999999999999999999999988866 69999999999999999999 9999999999999
Q ss_pred eccC
Q 013726 328 LPSK 331 (437)
Q Consensus 328 ~~s~ 331 (437)
...+
T Consensus 360 QLKR 363 (371)
T KOG0146|consen 360 QLKR 363 (371)
T ss_pred hhcC
Confidence 8764
No 95
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.63 E-value=4.2e-07 Score=91.13 Aligned_cols=149 Identities=20% Similarity=0.160 Sum_probs=113.2
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH---hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN---LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~---lng~~l~Gr~L~V~~ 329 (437)
...+-.|.|++|-..++|.+|.+.++.||+|..+..+..+ ..+.|+|++.+.|.+++. -+...+.|+.-.+.+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~----r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK----RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc----ceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 3455679999999999999999999999999999887654 489999999999999987 355667888877777
Q ss_pred cCCCCCCCCCCCCCCChhhhcccccEEE--EEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHH
Q 013726 330 SKTAIAPVNPTFLPRTEDEREMCARTIY--CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIAS 407 (437)
Q Consensus 330 s~~~~~~~~~~~~pr~~~~~~~~~~tL~--V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A 407 (437)
+...... ++. .+.......|. |-|--+.+|-+-|..+..+ +|+|.+|.|.+++|- .|.|||++.+.|
T Consensus 104 Stsq~i~-----R~g--~es~~pN~VLl~TIlNp~YpItvDVly~Icnp-~GkVlRIvIfkkngV---QAmVEFdsv~~A 172 (494)
T KOG1456|consen 104 STSQCIE-----RPG--DESATPNKVLLFTILNPQYPITVDVLYTICNP-QGKVLRIVIFKKNGV---QAMVEFDSVEVA 172 (494)
T ss_pred chhhhhc-----cCC--CCCCCCCeEEEEEeecCccccchhhhhhhcCC-CCceEEEEEEeccce---eeEEeechhHHH
Confidence 6422111 111 11122223333 4566678999999999999 599999999988663 799999999999
Q ss_pred HHHHhhcCc
Q 013726 408 STLFIHTEF 416 (437)
Q Consensus 408 ~kal~~~~~ 416 (437)
++|-+..++
T Consensus 173 qrAk~alNG 181 (494)
T KOG1456|consen 173 QRAKAALNG 181 (494)
T ss_pred HHHHhhccc
Confidence 776555544
No 96
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.63 E-value=3.1e-08 Score=90.71 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=61.3
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCchh
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~i 424 (437)
..||||+||+..++++.|+++|-+ +|+|.++++++| ....+|||||+|.+.++|+.|+...+..-+....|
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iq-agpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpI 81 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQ-AGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPI 81 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHh-cCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCcee
Confidence 479999999999999999999999 599999999999 56799999999999999987777666655555443
No 97
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=8.6e-08 Score=95.37 Aligned_cols=77 Identities=25% Similarity=0.484 Sum_probs=71.9
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
+...|||..|++-+|+++|.-+|+.||.|.+|.+++|..+ +..||||+|.+.+++.+|.- |++..|+.+.|+|.++.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 3467999999999999999999999999999999999987 58899999999999999976 99999999999998864
No 98
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=1.5e-07 Score=93.66 Aligned_cols=78 Identities=21% Similarity=0.380 Sum_probs=70.3
Q ss_pred hhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH--hcCeEeeeeeeEEe
Q 013726 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN--LAGTMLGFYPVRVL 328 (437)
Q Consensus 251 ~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~--lng~~l~Gr~L~V~ 328 (437)
.++..-+||||++|...+++.+|+++|.+||+|.++++.... ++|||+|.+.++|+.|.+ ++...++|++|.|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 345667899999999999999999999999999999997654 599999999999999987 88888999999999
Q ss_pred ccCC
Q 013726 329 PSKT 332 (437)
Q Consensus 329 ~s~~ 332 (437)
|.+.
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9875
No 99
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.53 E-value=8.6e-08 Score=93.33 Aligned_cols=74 Identities=28% Similarity=0.414 Sum_probs=68.8
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
..+++|+|+||.+.++.++|+..|++||+|..|.++.| |+||.|.-.++|..|++ ||+..++|++++|+.+..
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc------eeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 46788999999999999999999999999999999854 99999999999999999 999999999999998764
Q ss_pred C
Q 013726 333 A 333 (437)
Q Consensus 333 ~ 333 (437)
-
T Consensus 150 r 150 (346)
T KOG0109|consen 150 R 150 (346)
T ss_pred c
Confidence 3
No 100
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.51 E-value=2.3e-07 Score=100.09 Aligned_cols=74 Identities=26% Similarity=0.370 Sum_probs=68.9
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
..++|||||+|+..+++.+|.++|+.||+|.+|.++.. +|+|||.+....+|.+|+. |+...+.++.|+|.|+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 44789999999999999999999999999999999654 5799999999999999999 99999999999999985
No 101
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=1.5e-08 Score=92.70 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=57.0
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
+.-|||+|||+++||.||.-.|++| |+|..|.+++| +|+++||||+.|++..+..=|..+.+++.++.
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqy-Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g 104 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQY-GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG 104 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeecc-CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc
Confidence 4789999999999999999999995 99999999998 78899999999999887644444444444333
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=1.4e-07 Score=82.67 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=65.1
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCc--eeccCchhh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEF--YILHNPSIA 425 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~--~~~~~~~i~ 425 (437)
+.....|||.++...+|++||.+.|..| |+|+++.+.-| +|-.+|||.|+|++.+.|++|+...+. ++..+..+.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dy-GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADY-GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhc-ccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3345799999999999999999999995 99999999877 788999999999999999999887774 344454566
Q ss_pred hh
Q 013726 426 WL 427 (437)
Q Consensus 426 ~~ 427 (437)
|+
T Consensus 148 w~ 149 (170)
T KOG0130|consen 148 WC 149 (170)
T ss_pred EE
Confidence 64
No 103
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.49 E-value=1e-08 Score=111.38 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=113.2
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEe--eCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC--GDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~--~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~~ 332 (437)
+..++||+||+..+.+++|...|..+|.+..+++. .+....+|+||++|..++++.+|+.++...+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 34679999999999999999999999877776664 333446899999999999999999954333333
Q ss_pred CCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHH
Q 013726 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLF 411 (437)
Q Consensus 333 ~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal 411 (437)
...++|.|.|+..|.++++.++.++ |.+++++++.. .|+++|.|||.|.+..+|.+..
T Consensus 736 --------------------K~~v~i~g~pf~gt~e~~k~l~~~~-gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~ 794 (881)
T KOG0128|consen 736 --------------------KISVAISGPPFQGTKEELKSLASKT-GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKV 794 (881)
T ss_pred --------------------hhhhheeCCCCCCchHHHHhhcccc-CCccccchhhhhccccccceeccCCCcchhhhhc
Confidence 1488999999999999999999996 99999987776 7899999999999999998887
Q ss_pred hhcCceeccC
Q 013726 412 IHTEFYILHN 421 (437)
Q Consensus 412 ~~~~~~~~~~ 421 (437)
+.....+..-
T Consensus 795 ~s~d~~~~rE 804 (881)
T KOG0128|consen 795 ASVDVAGKRE 804 (881)
T ss_pred ccchhhhhhh
Confidence 7777655443
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.45 E-value=1.7e-07 Score=93.31 Aligned_cols=170 Identities=20% Similarity=0.138 Sum_probs=121.6
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCC--CCCceEEEEEEcCHHHHHHHHHhcCe-EeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEEGARAALNLAGT-MLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~--~~s~GfaFVeF~~~e~A~~Al~lng~-~l~Gr~L~V~~s 330 (437)
....+.|++++...+.+.+...++..+|....+.+.... ..++|++++.|...+.+..|+.+.+. .+.+..+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 457889999999999999888999999987777665433 34699999999999999999997664 556655544433
Q ss_pred CCCCCCCCCCCCCCChhhhcccccEEE-EEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHH
Q 013726 331 KTAIAPVNPTFLPRTEDEREMCARTIY-CTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIAS 407 (437)
Q Consensus 331 ~~~~~~~~~~~~pr~~~~~~~~~~tL~-V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A 407 (437)
..-..... .+... .......+++ ++|+++.+++++|+..|.. ||.|..++++.+ .+..+|||||.|.+..++
T Consensus 166 ~~~~~~~~---n~~~~-~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 166 TRRGLRPK---NKLSR-LSSGPSDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred cccccccc---chhcc-cccCccccceeecccccccchHHHhhhccC-cCcceeeccCCCCCccchhhhhhhhhhhchhH
Confidence 22111000 00101 1122344555 9999999999999999997 699999999987 567999999999999988
Q ss_pred HHHHhhcCceeccCc-hhhhhh
Q 013726 408 STLFIHTEFYILHNP-SIAWLE 428 (437)
Q Consensus 408 ~kal~~~~~~~~~~~-~i~~~~ 428 (437)
+.++...+..+...+ .+...+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 241 KLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred HHHhhcccCcccCcccccccCC
Confidence 777773333333333 344433
No 105
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.44 E-value=4.7e-07 Score=84.53 Aligned_cols=78 Identities=24% Similarity=0.325 Sum_probs=69.6
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcC-CCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGC-GQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~-G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
.....-+||..+|..+.+.++...|.++ |.+..+++.+++.+ ++|||||+|++++.|.-|-+ ||++.|.|+-|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4455679999999999999999999988 78888888888876 59999999999999999999 99999999998887
Q ss_pred cc
Q 013726 329 PS 330 (437)
Q Consensus 329 ~s 330 (437)
.-
T Consensus 126 vm 127 (214)
T KOG4208|consen 126 VM 127 (214)
T ss_pred Ee
Confidence 64
No 106
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.42 E-value=3.4e-07 Score=85.45 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=61.3
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..++|.|-||-+.++.++|+.+|++| |.|-.|.|++| +..++|||||.|....+|+.|+..+++..+.-
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekY-G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg 82 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKY-GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG 82 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHh-CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc
Confidence 45899999999999999999999995 99999999999 66799999999999999988888877755443
No 107
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=4e-07 Score=83.05 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=48.9
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhh
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIH 413 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~ 413 (437)
.++|||+||+..+++.||...|..| |.|.+|-|-+. +-|||||+|+++.+|..|.-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~y-G~lrsvWvArn---PPGfAFVEFed~RDA~DAvr~ 66 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKY-GPLRSVWVARN---PPGFAFVEFEDPRDAEDAVRY 66 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhc-CcceeEEEeec---CCCceEEeccCcccHHHHHhh
Confidence 4899999999999999999999985 99999998774 446999999998777655443
No 108
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.41 E-value=2e-06 Score=86.58 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=112.3
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcC----CCeeEEE-EeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEec
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGC----GQVVDCR-ICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 329 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~----G~I~~vr-i~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~ 329 (437)
+...|..++||+..++.++..+|+-. |.+.-|. .... ..|.+.|.|.++|.-+.|++-+...++++.|.|..
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgr---Rnge~lvrf~d~e~RdlalkRhkhh~g~ryievYk 135 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGR---RNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYK 135 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhc---cccceEEEecCchhhhhhhHhhhhhccCCceeeec
Confidence 44557788999999999999999843 2222221 1122 24899999999999999999888889999999987
Q ss_pred cCCCC--------CCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcC---CceEEEEEecc-CCCcceEE
Q 013726 330 SKTAI--------APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVC---GEVYRLRLLGD-YHHSTRIA 397 (437)
Q Consensus 330 s~~~~--------~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~---G~I~~v~i~kd-~g~srGfA 397 (437)
+.-.. ......+.++ ...-.|.+++||+++|+.|+.++|.+-| |..+.|-++.. +|+.+|-|
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk------~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdA 209 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSK------ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDA 209 (508)
T ss_pred cCchhheEecCCccccCCCCCCc------ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccce
Confidence 64211 0001112221 1235788899999999999999997332 34455555444 88999999
Q ss_pred EEEeCCHHHHHHHHhhcCceeccC
Q 013726 398 FVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 398 FVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
||.|...++|+.||......++..
T Consensus 210 Fvlfa~ee~aq~aL~khrq~iGqR 233 (508)
T KOG1365|consen 210 FVLFACEEDAQFALRKHRQNIGQR 233 (508)
T ss_pred EEEecCHHHHHHHHHHHHHHHhHH
Confidence 999999999988887766555443
No 109
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.41 E-value=1.1e-06 Score=88.04 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=70.8
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
....|||++||.+++++++++.|.+||.|..+-++.|..+ .+||+||.|.+++++.+++...-+.|.|+.+.|+.+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeecc
Confidence 4568999999999999999999999999999999888866 5999999999999999999988999999999999875
No 110
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.37 E-value=4.5e-07 Score=91.80 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=109.9
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcC--eEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG--TMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng--~~l~Gr~L~V~~s 330 (437)
..++.|.++|||++++|++|.+++.+||.|..+.+...++ -||++|.+.++|..-+. ... -.+.|++|.|.++
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn----QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN----QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch----hhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 3678899999999999999999999999999998876655 89999999999887444 222 2467888888876
Q ss_pred CCCCCCCCCC-------------------CCCCCh--h--hh---cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEE
Q 013726 331 KTAIAPVNPT-------------------FLPRTE--D--ER---EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRL 384 (437)
Q Consensus 331 ~~~~~~~~~~-------------------~~pr~~--~--~~---~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v 384 (437)
....-..... ..+... . .. ...--.++|.|+-+.++-+-|..+|++| |.|..+
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~f-G~VlKI 180 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKF-GFVLKI 180 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhc-ceeEEE
Confidence 4211000000 000000 0 00 1122367899999999999999999996 999988
Q ss_pred EEeccCCCcceEEEEEeCCHHHHHH---HHhhcCce
Q 013726 385 RLLGDYHHSTRIAFVEFVMVIASST---LFIHTEFY 417 (437)
Q Consensus 385 ~i~kd~g~srGfAFVeF~s~e~A~k---al~~~~~~ 417 (437)
.-..+... =.|.|+|.++++|+. +|...+.|
T Consensus 181 iTF~Knn~--FQALvQy~d~~sAq~AK~aLdGqnIy 214 (492)
T KOG1190|consen 181 ITFTKNNG--FQALVQYTDAVSAQAAKLALDGQNIY 214 (492)
T ss_pred EEEecccc--hhhhhhccchhhHHHHHHhccCCccc
Confidence 66554221 159999999888744 45555544
No 111
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.37 E-value=7.1e-07 Score=83.31 Aligned_cols=70 Identities=23% Similarity=0.319 Sum_probs=62.2
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
....+|+..+|.-+.+.++..+|.++.|.|..+++-++ +|+++|||||+|++.+.|+-|-..|+.|++.-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e 119 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME 119 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh
Confidence 45789999999999999999999997789999999666 89999999999999999988888888876654
No 112
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.36 E-value=5.3e-07 Score=91.93 Aligned_cols=77 Identities=23% Similarity=0.227 Sum_probs=67.4
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccCchhhhhhh
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSIAWLEE 429 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~i~~~~~ 429 (437)
.+.+||.|||+++..+||+++|....|+|++|.++.| .|++||.|.|+|+++|.++||+...+.|-..-..|..-|+
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3569999999999999999999987899999999999 8899999999999999999999999888666555443333
No 113
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=4.9e-07 Score=83.10 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=55.3
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCce
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFY 417 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~ 417 (437)
.+++|||+|||.++.+.||.++|-+| |.|..|.+....+ .-.||||+|+++.+|..|+-..+.|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKy-g~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGY 68 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKY-GRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGY 68 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhh-cceEEEEeccCCC-CCCeeEEEecCccchhhhhhccccc
Confidence 35799999999999999999999995 9999998865433 3459999999999999888877765
No 114
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.35 E-value=5.9e-07 Score=93.82 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=65.7
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhhh
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLEE 429 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~~ 429 (437)
..+||+|||+++++++|.++|+.. |.|.++++..| +|+++||||++|.+.++|.+|+...+.+-.... .+.|++.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~-g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV-GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc-CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 799999999999999999999996 99999999998 788999999999999999999888886544333 4666654
Q ss_pred h
Q 013726 430 F 430 (437)
Q Consensus 430 ~ 430 (437)
-
T Consensus 98 ~ 98 (435)
T KOG0108|consen 98 R 98 (435)
T ss_pred c
Confidence 4
No 115
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.35 E-value=3.9e-06 Score=80.63 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=106.8
Q ss_pred EEEecCCccchHHH-H--HHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCC
Q 013726 259 VYVSDIDQQVTEEQ-L--AALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 333 (437)
Q Consensus 259 LfVgNLp~~~tee~-L--~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~ 333 (437)
.+++++-..+..+- | ...|+.+-.....++..+... -.+++|+.|.....-.++-. -++..++..++++......
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 45555544444433 2 455665555555555554433 47899999987777776665 5666666666665543322
Q ss_pred CCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHH
Q 013726 334 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLF 411 (437)
Q Consensus 334 ~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal 411 (437)
..+. ..+......+||++.|..+++++-|-..|.+| -.....++.+| +|+++||+||.|.+..++..|+
T Consensus 179 edPs--------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kf-psf~~akviRdkRTgKSkgygfVSf~~pad~~rAm 249 (290)
T KOG0226|consen 179 EDPS--------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKF-PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAM 249 (290)
T ss_pred CCcc--------cccCccccceeecccccccccHHHHHHHHHhc-cchhhccccccccccccccceeeeecCHHHHHHHH
Confidence 1111 11223344799999999999999999999996 77777788888 7899999999999999998887
Q ss_pred hhcCceeccCchh
Q 013726 412 IHTEFYILHNPSI 424 (437)
Q Consensus 412 ~~~~~~~~~~~~i 424 (437)
..++.-..++..|
T Consensus 250 rem~gkyVgsrpi 262 (290)
T KOG0226|consen 250 REMNGKYVGSRPI 262 (290)
T ss_pred Hhhcccccccchh
Confidence 7776654444444
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=98.35 E-value=1.2e-06 Score=68.80 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=43.3
Q ss_pred HHHHHHHhh----hcCCceEEEE-Eecc--C--CCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 367 QADVKLFFE----SVCGEVYRLR-LLGD--Y--HHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 367 eedLrelF~----~f~G~I~~v~-i~kd--~--g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
+++|+++|+ +| |.|.++. +..+ . ++++|||||+|.+.++|.+|+.+.++-...
T Consensus 2 ~~~l~~~~~~~~~~f-G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~ 63 (70)
T smart00361 2 DEDFEREFSEEEEYF-GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD 63 (70)
T ss_pred chhHHHHHHHHHHhc-CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 678999998 85 9999995 5544 3 789999999999999999998877664443
No 117
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=6.4e-07 Score=98.07 Aligned_cols=152 Identities=14% Similarity=0.194 Sum_probs=122.6
Q ss_pred hhhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCC-CCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEE
Q 013726 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (437)
Q Consensus 250 ~~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~-~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V 327 (437)
......++|||++||+..+++.+|+..|..+|.|.+|.|.... ++..-|+||.|.+-..+..|+. +.+..|..-.+++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 3455778999999999999999999999999999999996653 4456799999999999999977 8887775545444
Q ss_pred eccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHH
Q 013726 328 LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIAS 407 (437)
Q Consensus 328 ~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A 407 (437)
..... .....+.+++++|........|...|..| |.|..|.+-.. .-||+|.|++...|
T Consensus 446 glG~~----------------kst~ttr~~sgglg~w~p~~~l~r~fd~f-Gpir~Idy~hg----q~yayi~yes~~~a 504 (975)
T KOG0112|consen 446 GLGQP----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRF-GPIRIIDYRHG----QPYAYIQYESPPAA 504 (975)
T ss_pred ccccc----------------ccccceeeccCCCCCCChHHHHHHHhhcc-CcceeeecccC----CcceeeecccCccc
Confidence 43310 12345799999999999999999999995 99998766432 33999999999999
Q ss_pred HHHHhhcCceeccCc
Q 013726 408 STLFIHTEFYILHNP 422 (437)
Q Consensus 408 ~kal~~~~~~~~~~~ 422 (437)
+.+..++-...++.|
T Consensus 505 q~a~~~~rgap~G~P 519 (975)
T KOG0112|consen 505 QAATHDMRGAPLGGP 519 (975)
T ss_pred hhhHHHHhcCcCCCC
Confidence 988888877766655
No 118
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.1e-07 Score=86.38 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=59.1
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCc
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEF 416 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~ 416 (437)
..++|||++|..++|+.-|...|-+| |.|..|.++.| +++.||||||+|+..|+|.+|+.+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPF-GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMne 74 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPF-GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNE 74 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccc-cchhhcccccchhcccccceeEEEeeccchhHHHhhcCch
Confidence 34899999999999999999999996 99999999999 677999999999999999999888775
No 119
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.27 E-value=1.9e-06 Score=90.33 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=74.2
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCC--ceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSV--LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s--~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||.+|...+...+|+.+|++||.|+-.+++.+..++ ++||||.+.+.++|.+||. |+.+.|.|+-|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3456889999999999999999999999999999999877653 8999999999999999999 999999999999998
Q ss_pred cCCCC
Q 013726 330 SKTAI 334 (437)
Q Consensus 330 s~~~~ 334 (437)
++..+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 87544
No 120
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.25 E-value=1.6e-06 Score=83.72 Aligned_cols=86 Identities=23% Similarity=0.343 Sum_probs=77.6
Q ss_pred hhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEe
Q 013726 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (437)
Q Consensus 251 ~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~ 328 (437)
..+.+.+.+||+|+.+.+|.+++...|+.||.|..+.+..|+.+ ++||+||+|.+.+.+..|+.|+|..+.|+.+.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 44678899999999999999999999999999999999888765 6999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 013726 329 PSKTAIAP 336 (437)
Q Consensus 329 ~s~~~~~~ 336 (437)
+.+..+..
T Consensus 176 ~~r~~~pg 183 (231)
T KOG4209|consen 176 LKRTNVPG 183 (231)
T ss_pred eeeeecCC
Confidence 98766433
No 121
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.21 E-value=2.3e-06 Score=88.99 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=67.1
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCC--CCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~--~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~~ 332 (437)
...+|||+|||++++.++|.++|..||.|+..+|.... .+..+||||+|.+.+++..|+.-+...+++++|.|+..+.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 34559999999999999999999999999988875433 2223999999999999999999778889999999988654
No 122
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.15 E-value=8.9e-06 Score=87.32 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=71.9
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCC-----CCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeE
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 326 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~-----~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~ 326 (437)
+..+++|||+||++.++++.|...|..||+|.+++++..+. ....+|||.|-+..+|++|++ |+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45678899999999999999999999999999999975442 246799999999999999999 999999999999
Q ss_pred EeccCCC
Q 013726 327 VLPSKTA 333 (437)
Q Consensus 327 V~~s~~~ 333 (437)
+.|++.-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998643
No 123
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.10 E-value=7.1e-06 Score=79.54 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=71.3
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
+.-..+|+|.|||+.+++++|+++|..||.+..+-+..++.+ +.|.|-|.|...++|.+|++ ++|..++|+++++...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 334478999999999999999999999999999999888876 68999999999999999999 9999999999888765
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
.
T Consensus 160 ~ 160 (243)
T KOG0533|consen 160 S 160 (243)
T ss_pred c
Confidence 4
No 124
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.08 E-value=7.7e-06 Score=60.94 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=38.8
Q ss_pred HHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 370 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 370 LrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
|+++|++| |+|..+.+.++. +|+|||+|.+.++|.+|+...+......
T Consensus 1 L~~~f~~f-G~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g 48 (56)
T PF13893_consen 1 LYKLFSKF-GEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNG 48 (56)
T ss_dssp HHHHHTTT-S-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred ChHHhCCc-ccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 68899995 999999998765 5699999999999999988666544443
No 125
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=3.9e-06 Score=88.12 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=65.7
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeE
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 326 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~ 326 (437)
.+...++|+|-|||..+++++|+.+|+.||+|..++..+.. .|..||+|.|.-+|++|++ |++..+.|+.|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 35678999999999999999999999999999997775544 4899999999999999999 999999999988
No 126
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.98 E-value=3.4e-05 Score=64.79 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=60.9
Q ss_pred CcEEEEecCCccchHHHHHHHHhcC--CCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEee----eeeeE
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGC--GQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLG----FYPVR 326 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~--G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~----Gr~L~ 326 (437)
++||.|+|||...|.++|.+++... |..--+.++.|..+ +.|||||.|.+++.|.+-.+ ++|..+. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 4799999999999999999998753 66666777766544 69999999999999999998 9998874 33455
Q ss_pred EeccC
Q 013726 327 VLPSK 331 (437)
Q Consensus 327 V~~s~ 331 (437)
|.+++
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 55553
No 127
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.97 E-value=8.3e-06 Score=88.35 Aligned_cols=77 Identities=25% Similarity=0.424 Sum_probs=66.5
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCch--hhhh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPS--IAWL 427 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~--i~~~ 427 (437)
..+++||||+.|+..++|.||.++|+.| |+|.+|.+.. +||.|||......+|.+|+.....|...... |.||
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feef-GeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEF-GEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhc-ccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 5678999999999999999999999995 9999999874 5669999999999999999888877666654 5998
Q ss_pred hhhc
Q 013726 428 EEFS 431 (437)
Q Consensus 428 ~~~s 431 (437)
--|.
T Consensus 493 ~g~G 496 (894)
T KOG0132|consen 493 VGKG 496 (894)
T ss_pred ccCC
Confidence 6553
No 128
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.96 E-value=1.8e-05 Score=74.93 Aligned_cols=74 Identities=19% Similarity=0.320 Sum_probs=58.8
Q ss_pred cEEEEEcCCccCCHHHHHH----HhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 354 RTIYCTNIDKKVTQADVKL----FFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLre----lF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
.||||.||+..+..++|+. +|++| |+|..|...+ +.+.||.|||.|.+.+.|-.|+....++..... .|+||
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqf-G~ildI~a~k-t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQF-GKILDISAFK-TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhh-CCeEEEEecC-CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 4999999999999999998 99996 9999998765 456899999999999888666666555433332 47777
Q ss_pred hh
Q 013726 428 EE 429 (437)
Q Consensus 428 ~~ 429 (437)
.+
T Consensus 88 ~s 89 (221)
T KOG4206|consen 88 KS 89 (221)
T ss_pred cC
Confidence 54
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.95 E-value=4.6e-05 Score=81.79 Aligned_cols=166 Identities=14% Similarity=0.027 Sum_probs=113.2
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-C-ceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-V-LRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s-~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
.+.+.+-+++.++++...+++++|... .|..+.+..+.-. + .|-++|+|....++.+|++-+...+-.+.+.+.+..
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 445567778999999999999999743 2333334333221 2 689999999999999999978777778888887653
Q ss_pred CCCC----------C--------CCCCCCCCChhh-------hcccccEEEEEcCCccCCHHHHHHHhhhcCCceEE-EE
Q 013726 332 TAIA----------P--------VNPTFLPRTEDE-------REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR-LR 385 (437)
Q Consensus 332 ~~~~----------~--------~~~~~~pr~~~~-------~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~-v~ 385 (437)
...- . ..+.-.++.... -......|||..||..+++.++-++|... -.|+. |.
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~-~~Ved~I~ 466 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGA-AAVEDFIE 466 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhh-hhhhheeE
Confidence 2100 0 000011111110 12345799999999999999999999986 45555 55
Q ss_pred Eecc-CCCcceEEEEEeCCHHHHHHHHhhcCc-eeccC
Q 013726 386 LLGD-YHHSTRIAFVEFVMVIASSTLFIHTEF-YILHN 421 (437)
Q Consensus 386 i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~-~~~~~ 421 (437)
|-+- ++..++-|||.|...+++.+|+..++. |+.|.
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r 504 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHR 504 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCce
Confidence 5554 677889999999998888666555544 55544
No 130
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.2e-05 Score=80.48 Aligned_cols=69 Identities=14% Similarity=0.355 Sum_probs=60.5
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
+.+.|||..|.+-+|++||.-+|+.| |.|.+|.|++| +|.+--||||+|++.+++.+|.-.+...++..
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrF-G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRF-GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhc-ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc
Confidence 34899999999999999999999996 99999999998 67788899999999999988877666665544
No 131
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.86 E-value=1.3e-05 Score=77.10 Aligned_cols=79 Identities=18% Similarity=0.345 Sum_probs=71.6
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
.+.+...||.|.|..+++++-|...|.+|-.....++++|+.+ ++||+||.|.+.+++..|++ |+|..++.++|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 4556788999999999999999999999988888899988866 69999999999999999999 99999999999886
Q ss_pred cc
Q 013726 329 PS 330 (437)
Q Consensus 329 ~s 330 (437)
.+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 64
No 132
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.85 E-value=6.5e-05 Score=63.09 Aligned_cols=64 Identities=22% Similarity=0.141 Sum_probs=54.2
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhc-CCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCce
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESV-CGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFY 417 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f-~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~ 417 (437)
+||.|+|||...|.++|.+++... .|....+-+|.| ++.+.|||||-|.+++.|.+....-++.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 799999999999999999988754 477888889988 4459999999999999997776666554
No 133
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.68 E-value=2.1e-05 Score=79.50 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=114.7
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-----CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-----VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-----s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
..|-|.||.+++|.++++.+|.-+|.|..+++...... ....|||.|.+...+..|.-|.++++-++.|.|-+.-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 37999999999999999999999999999999764432 3779999999999999998888898888888876643
Q ss_pred CCCCCCC----------------------CCCC---------------C---CCh--hhhcccccEEEEEcCCccCCHHH
Q 013726 332 TAIAPVN----------------------PTFL---------------P---RTE--DEREMCARTIYCTNIDKKVTQAD 369 (437)
Q Consensus 332 ~~~~~~~----------------------~~~~---------------p---r~~--~~~~~~~~tL~V~NLp~~vteed 369 (437)
....+.. +... | ... ..-....++++|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 2211100 0000 0 000 01123347899999999999999
Q ss_pred HHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCc
Q 013726 370 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEF 416 (437)
Q Consensus 370 LrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~ 416 (437)
+-+.|+.+ |+|...++.-... .-+|.++|....+...++...+.
T Consensus 168 ~~e~f~r~-Gev~ya~~ask~~--s~~c~~sf~~qts~~halr~~gr 211 (479)
T KOG4676|consen 168 SGESFERK-GEVSYAHTASKSR--SSSCSHSFRKQTSSKHALRSHGR 211 (479)
T ss_pred hhhhhhhc-chhhhhhhhccCC--CcchhhhHhhhhhHHHHHHhcch
Confidence 99999996 9998887754432 23677888877666666655543
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.67 E-value=5.9e-05 Score=75.43 Aligned_cols=75 Identities=23% Similarity=0.288 Sum_probs=57.9
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCc--eeccCc-hhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEF--YILHNP-SIAWLE 428 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~--~~~~~~-~i~~~~ 428 (437)
..++|||++|...+++.||+++|-+| |+|.++++....+ .|||+|.+.++|..|....-. +|-+.. .|.|.+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqy-Geirsi~~~~~~~----CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQY-GEIRSIRILPRKG----CAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhc-CCeeeEEeecccc----cceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 45899999999999999999999995 9999999986544 999999999999555443322 222222 577887
Q ss_pred hhc
Q 013726 429 EFS 431 (437)
Q Consensus 429 ~~s 431 (437)
.+.
T Consensus 302 ~~~ 304 (377)
T KOG0153|consen 302 PKQ 304 (377)
T ss_pred Ccc
Confidence 744
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.65 E-value=6.1e-05 Score=72.88 Aligned_cols=65 Identities=29% Similarity=0.451 Sum_probs=58.0
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcC
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTE 415 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~ 415 (437)
....+.+||+|+++.+|.+++...|+. ||.|..+.+++| .++++|||||+|.+.+.++.++....
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~g 164 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDG 164 (231)
T ss_pred ccCCceEEEeccccccccchhhheeec-cCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCC
Confidence 445689999999999999999999998 899999999998 45699999999999999999988433
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.55 E-value=9.9e-05 Score=76.96 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=55.5
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~--g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
.+|||+|||.++++.+|+++|..| |.|+...|.... ++..+||||+|.+.++++.++.....++...
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~F-G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~ 357 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQF-GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGR 357 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhc-ccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCe
Confidence 459999999999999999999995 999999887763 4444899999999999977777665554443
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.49 E-value=0.00021 Score=69.37 Aligned_cols=67 Identities=22% Similarity=0.164 Sum_probs=59.5
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
...+|+|.|||+.++++||+++|..| |+++.+-+..+ .|.+.|.|=|.|...++|.+++..-+.+.+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~-~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~l 149 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEF-GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVAL 149 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHh-ccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCccc
Confidence 34799999999999999999999996 99999999998 788999999999999999888777666433
No 138
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.26 E-value=0.00042 Score=73.12 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=65.4
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHhhcCceeccCchhh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSIA 425 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~--g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~i~ 425 (437)
....++|+|.+|...+-..||+.||++| |.|.-.+++.+. -..+.|+||++.+.++|.+++.|.|.--+|-..|.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKy-GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmIS 478 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKY-GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMIS 478 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHh-cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeee
Confidence 5567899999999999999999999996 999999998873 23788999999999999999999998777775543
No 139
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.23 E-value=2.8e-05 Score=85.21 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=117.4
Q ss_pred CCcEEEEecCCccchHH-HHHHHHhcCCCeeEEEEeeCC-C-CCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEE-QLAALFVGCGQVVDCRICGDP-N-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee-~L~~~F~~~G~I~~vri~~d~-~-~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
..+...+.|+.+..... ..+..|..+|.|..++..... + ...-++++++....++..|....+..+.++.+.|..+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCC
Confidence 34557788888877666 567788899999999886522 2 22338999999999999999988888888888887765
Q ss_pred CCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEe--ccCCCcceEEEEEeCCHHHHHH
Q 013726 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL--GDYHHSTRIAFVEFVMVIASST 409 (437)
Q Consensus 332 ~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~--kd~g~srGfAFVeF~s~e~A~k 409 (437)
...........+.. .....++|++||+..+.++||...|..+ |.+..+++. .+.+..||+||++|..+++|.+
T Consensus 650 ~~~~~~~~kvs~n~----~R~~~~~fvsnl~~~~~~~dl~~~~~~~-~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 650 AEEKEENFKVSPNE----IRDLIKIFVSNLSPKMSEEDLSERFSPS-GTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred chhhhhccCcCchH----HHHHHHHHHhhcchhhcCchhhhhcCcc-chhhhHHHHHHhhccccccceeeEeecCCchhh
Confidence 33222222222211 1234689999999999999999999985 888877665 4477899999999999999988
Q ss_pred HHhhcCce
Q 013726 410 LFIHTEFY 417 (437)
Q Consensus 410 al~~~~~~ 417 (437)
+++.....
T Consensus 725 aV~f~d~~ 732 (881)
T KOG0128|consen 725 AVAFRDSC 732 (881)
T ss_pred hhhhhhhh
Confidence 77665543
No 140
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.23 E-value=0.00029 Score=66.84 Aligned_cols=64 Identities=25% Similarity=0.404 Sum_probs=54.5
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEe
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML 320 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l 320 (437)
...||||.||.+++||++|+.+|+.|-....+++.. ..++..||++|++.+.|..||. |+|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 346899999999999999999999998776666632 3357899999999999999999 988766
No 141
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.21 E-value=0.00092 Score=56.95 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=37.0
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcC
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTE 415 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~ 415 (437)
..|+|.+++..++.++|++.|++| |.|..|.+.+... .|||.|.+.++|++++....
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~-g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF-GEVAYVDFSRGDT----EGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS---EEEEE--TT-S----EEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc-CCcceEEecCCCC----EEEEEECCcchHHHHHHHHH
Confidence 468999999999999999999995 9999999887655 79999999999988766433
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.19 E-value=0.00072 Score=55.04 Aligned_cols=67 Identities=24% Similarity=0.269 Sum_probs=45.9
Q ss_pred cEEEEecCCccchHHH----HHHHHhcCC-CeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 257 RTVYVSDIDQQVTEEQ----LAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 257 rtLfVgNLp~~~tee~----L~~~F~~~G-~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
..|+|.|||.+.+... |+.++..|| .|.+|. .+.|+|-|.+++.|.+|.+ |+|..+.|.+|.|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 4699999999877655 555666776 555541 2689999999999999999 9999999999999987
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
.
T Consensus 75 ~ 75 (90)
T PF11608_consen 75 P 75 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.00067 Score=71.68 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=53.5
Q ss_pred hhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcC
Q 013726 347 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTE 415 (437)
Q Consensus 347 ~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~ 415 (437)
.+.....++|+|-|||.++++++|+.+|+.| |+|+.|+.-. ..+|..||+|-+..+|++|+....
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~y-Geir~ir~t~---~~~~~~~v~FyDvR~A~~Alk~l~ 133 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAY-GEIREIRETP---NKRGIVFVEFYDVRDAERALKALN 133 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhh-cchhhhhccc---ccCceEEEEEeehHhHHHHHHHHH
Confidence 3445667999999999999999999999995 9999965543 466799999999998877766543
No 144
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.13 E-value=0.0012 Score=63.06 Aligned_cols=71 Identities=27% Similarity=0.360 Sum_probs=61.5
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....+.+.|.|++..+.+++|.+.|..+|.+..... ..+++||+|.+.++|..|+. +++..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 345677999999999999999999999999854444 24699999999999999999 999999999999943
No 145
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.07 E-value=7.3e-05 Score=76.36 Aligned_cols=137 Identities=18% Similarity=0.207 Sum_probs=101.4
Q ss_pred EEEEecCCccchHHHHHHHHhcC--CCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeE-eeeeeeEEeccCCC
Q 013726 258 TVYVSDIDQQVTEEQLAALFVGC--GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTM-LGFYPVRVLPSKTA 333 (437)
Q Consensus 258 tLfVgNLp~~~tee~L~~~F~~~--G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~-l~Gr~L~V~~s~~~ 333 (437)
.+|++||.+..+..+|..+|... +.-..+-+ ..||+||.+.+...|.+|++ ++|.. +.|+++.+.++-.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~- 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP- 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh-
Confidence 58999999999999999999753 11111111 24899999999999999999 88875 8899999887631
Q ss_pred CCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHh
Q 013726 334 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFI 412 (437)
Q Consensus 334 ~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~ 412 (437)
. ...++++-|+|+|+..-.+-|..|..+| |.+++|..... .. .-.-=|+|.+.+.++.++.
T Consensus 76 ----------k-----kqrsrk~Qirnippql~wevld~Ll~qy-g~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~ 137 (584)
T KOG2193|consen 76 ----------K-----KQRSRKIQIRNIPPQLQWEVLDSLLAQY-GTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIH 137 (584)
T ss_pred ----------H-----HHHhhhhhHhcCCHHHHHHHHHHHHhcc-CCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHH
Confidence 1 1234679999999999999999999995 99999976432 22 1122266777788877766
Q ss_pred hcCceec
Q 013726 413 HTEFYIL 419 (437)
Q Consensus 413 ~~~~~~~ 419 (437)
+.++..+
T Consensus 138 kl~g~Q~ 144 (584)
T KOG2193|consen 138 KLNGPQL 144 (584)
T ss_pred hhcchHh
Confidence 6655443
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=96.96 E-value=0.00042 Score=65.62 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=57.1
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
.+||||.|+-..++|+-|.++|-+. |+|..|.|+.+ .++.+ ||||.|.+.-+..-|....++..+-+
T Consensus 9 drtl~v~n~~~~v~eelL~Elfiqa-GPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~ 76 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQA-GPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEE 76 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhcc-CceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhcc
Confidence 3799999999999999999999996 99999999988 55566 99999999888877776666654444
No 147
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.83 E-value=0.021 Score=62.10 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=61.0
Q ss_pred CcEEEEecCCccchHHHHHHHHhcCCCe-eEEEEeeCCC-CCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGCGQV-VDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~G~I-~~vri~~d~~-~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
.+.|-+.|+|++++-+||.++|..|-.+ .+|++..+.+ ...|-|.|.|++.++|.+|.. +++..|..+.+++.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 3478899999999999999999998654 3455554443 368999999999999999988 99999999888764
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.83 E-value=0.00049 Score=69.93 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=58.5
Q ss_pred hhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEee
Q 013726 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLG 321 (437)
Q Consensus 251 ~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~ 321 (437)
..++..+|++|.+|+..+...++.+.|..+|+|...++..... .-+|-++|....+...|+.++|..+.
T Consensus 146 kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~--s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 146 KLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR--SSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC--CcchhhhHhhhhhHHHHHHhcchhhh
Confidence 4566779999999999999999999999999999888864443 34778999999999999998887765
No 149
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.77 E-value=0.0018 Score=70.07 Aligned_cols=79 Identities=13% Similarity=0.226 Sum_probs=64.1
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-----CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-----YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP-- 422 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-----~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~-- 422 (437)
...+++|||+||++.++++.|...|..| |+|.+++|... ....+-.|||-|.+..+|.+|+....+.+...-
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrf-gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRF-GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhccc-CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 3456899999999999999999999995 99999998754 123556899999999999999988887655443
Q ss_pred hhhhhhh
Q 013726 423 SIAWLEE 429 (437)
Q Consensus 423 ~i~~~~~ 429 (437)
.+.|++.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 5777654
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.75 E-value=0.0041 Score=52.97 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=36.3
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN 314 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~ 314 (437)
..|.|.+++..++-++|++.|+.||.|..|.+.... ..|+|-|.++++|..|+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~----~~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD----TEGYVRFKTPEAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-----SEEEEEESS---HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC----CEEEEEECCcchHHHHHH
Confidence 458899999999999999999999999999886544 389999999999999987
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.62 E-value=0.0062 Score=45.38 Aligned_cols=52 Identities=12% Similarity=0.200 Sum_probs=42.3
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLF 411 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal 411 (437)
+.|-|.+.+.+..+ ++...|.. ||+|..+.+..... +.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~-fGeI~~~~~~~~~~----~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFAS-FGEIVDIYVPESTN----WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHh-cCCEEEEEcCCCCc----EEEEEECCHHHHHhhC
Confidence 57889999977664 45668888 59999998874444 8999999999998885
No 152
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.61 E-value=0.0066 Score=45.23 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=42.6
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHH
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 313 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al 313 (437)
+.|-|.+.+++.. +.+...|.+||+|..+.+.... .+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 5788999998766 4456689999999998886333 49999999999999985
No 153
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.37 E-value=0.0073 Score=60.76 Aligned_cols=83 Identities=14% Similarity=0.239 Sum_probs=59.7
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEE--------EEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYR--------LRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP 422 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~--------v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~ 422 (437)
..+.|||.|||.++|.+++.++|++ ||-|.+ |++.++ .|+.+|=|.+.|--.++..=|+.+.+...++.-
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3467999999999999999999999 798854 777777 788999898888777776555555554433332
Q ss_pred h--hhhhh-hhcCCcc
Q 013726 423 S--IAWLE-EFSGEYL 435 (437)
Q Consensus 423 ~--i~~~~-~~sg~~~ 435 (437)
. ++-|. ++.|+|-
T Consensus 212 ~~rVerAkfq~Kge~~ 227 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYD 227 (382)
T ss_pred EEEEehhhhhhccCcC
Confidence 2 33232 5566664
No 154
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.35 E-value=0.023 Score=47.98 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=51.6
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEe-eC-------C-CCCceEEEEEEcCHHHHHHHHHhcCeEeeeee-
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC-GD-------P-NSVLRFAFIEFTDEEGARAALNLAGTMLGFYP- 324 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~-~d-------~-~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~- 324 (437)
..+.|.|-+.|+..+ ..+.+.|++||.|.+..-. ++ + .....+-.|.|.++.+|.+||..||..+.|.-
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 456788999999854 6677889999999877511 11 0 11345999999999999999999999998754
Q ss_pred eEEecc
Q 013726 325 VRVLPS 330 (437)
Q Consensus 325 L~V~~s 330 (437)
+-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 445554
No 155
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.26 E-value=0.0041 Score=62.78 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=67.3
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeE--------EEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEee
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--------CRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLG 321 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~--------vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~ 321 (437)
....-||||-+||..+++++|.++|.+||.|.. +.+-+|+.+ ++|-|.|.|.+...|++|+. +++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345678999999999999999999999998753 334445554 69999999999999999999 9999999
Q ss_pred eeeeEEeccC
Q 013726 322 FYPVRVLPSK 331 (437)
Q Consensus 322 Gr~L~V~~s~ 331 (437)
+..|+|..+.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9999998764
No 156
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.02 Score=60.42 Aligned_cols=62 Identities=26% Similarity=0.312 Sum_probs=56.5
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHh-cCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFV-GCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN 314 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~-~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~ 314 (437)
-..++|||||+||.-++.++|..+|. -||.|..+-|-.|++- ++|-|=|.|.+..+-.+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 35679999999999999999999999 6999999999888643 69999999999999999998
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.96 E-value=0.0084 Score=61.82 Aligned_cols=66 Identities=29% Similarity=0.490 Sum_probs=56.7
Q ss_pred hhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeC---CCC------------CceEEEEEEcCHHHHHHHHH-
Q 013726 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD---PNS------------VLRFAFIEFTDEEGARAALN- 314 (437)
Q Consensus 251 ~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d---~~~------------s~GfaFVeF~~~e~A~~Al~- 314 (437)
.++...+||.+-|||.+-.-+.|.++|..+|.|..|+|+.. +.. .+-+|+|+|...+.|.+|.+
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 45568899999999999999999999999999999999865 221 14589999999999999999
Q ss_pred hc
Q 013726 315 LA 316 (437)
Q Consensus 315 ln 316 (437)
|+
T Consensus 306 ~~ 307 (484)
T KOG1855|consen 306 LN 307 (484)
T ss_pred hc
Confidence 53
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.90 E-value=0.016 Score=58.27 Aligned_cols=75 Identities=21% Similarity=0.354 Sum_probs=59.6
Q ss_pred cEEEEecCCccchHHHH------HHHHhcCCCeeEEEEeeCC---CCCceEE--EEEEcCHHHHHHHHH-hcCeEeeeee
Q 013726 257 RTVYVSDIDQQVTEEQL------AALFVGCGQVVDCRICGDP---NSVLRFA--FIEFTDEEGARAALN-LAGTMLGFYP 324 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L------~~~F~~~G~I~~vri~~d~---~~s~Gfa--FVeF~~~e~A~~Al~-lng~~l~Gr~ 324 (437)
.-+||-+||+.+..++. .++|.+||.|..+.+-+.. ++..+.+ ||.|.+.|+|.+|+. .+|..++|+-
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999999887773 4689999999888774322 1123433 999999999999999 9999999999
Q ss_pred eEEeccC
Q 013726 325 VRVLPSK 331 (437)
Q Consensus 325 L~V~~s~ 331 (437)
|+..+..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9988754
No 159
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.87 E-value=0.0046 Score=61.74 Aligned_cols=77 Identities=26% Similarity=0.471 Sum_probs=66.0
Q ss_pred CCcEEE-EecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 255 IRRTVY-VSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLf-VgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
...++| |+||++.+++++|+..|..+|.|..+++..++.+ .+|||+|.|.....+..++..+...+.++++.+....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 334555 9999999999999999999999999999887766 4999999999999988888776667888888888754
No 160
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.79 E-value=0.024 Score=51.00 Aligned_cols=55 Identities=29% Similarity=0.439 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 271 EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 271 e~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
.+|.+.|..||.+.-+|+..+ .-+|.|.+.++|.+|+.++|..++|+.|+|....
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE--
T ss_pred HHHHHHHHhCCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCC
Confidence 367778899999998988754 5799999999999999999999999999998864
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.67 E-value=0.0054 Score=59.44 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=59.3
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC----------C----ceEEEEEEcCHHHHHHHHH-hcCeE
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS----------V----LRFAFIEFTDEEGARAALN-LAGTM 319 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~----------s----~GfaFVeF~~~e~A~~Al~-lng~~ 319 (437)
....||+++||+.+...-|+++|+.||.|-.|.+...... + ..-|+|+|.+...|..+.. ||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999999998654422 1 2357899999999999988 99999
Q ss_pred eeeee
Q 013726 320 LGFYP 324 (437)
Q Consensus 320 l~Gr~ 324 (437)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 162
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.65 E-value=0.022 Score=58.80 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=53.0
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-------CCCc--------ceEEEEEeCCHHHHHHHHhhc
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-------YHHS--------TRIAFVEFVMVIASSTLFIHT 414 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-------~g~s--------rGfAFVeF~s~e~A~kal~~~ 414 (437)
+.++++|.+.|||.+-.-+.|.++|+. ||.|.+|+|++. .+.+ +-.|+|+|+..+.|.+|....
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~-~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGT-VGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhc-ccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 457799999999999999999999999 599999999875 1112 336999999999998886655
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.031 Score=59.56 Aligned_cols=76 Identities=20% Similarity=0.206 Sum_probs=60.4
Q ss_pred cCCcEEEEecCCccch--H----HHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEee-eee
Q 013726 254 IIRRTVYVSDIDQQVT--E----EQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLG-FYP 324 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~t--e----e~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~-Gr~ 324 (437)
.....|+|-|+|.--. . .-|..+|+++|+++.+.+..+..+ .+||.|++|.+..+|..|++ +||+.|+ .|.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4556799999986322 2 345678999999999999877765 59999999999999999999 9999986 456
Q ss_pred eEEec
Q 013726 325 VRVLP 329 (437)
Q Consensus 325 L~V~~ 329 (437)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66654
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.19 E-value=0.03 Score=54.42 Aligned_cols=84 Identities=20% Similarity=0.138 Sum_probs=69.4
Q ss_pred HHHHHHH-hcCeEeeeeeeEEeccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEE
Q 013726 308 GARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 386 (437)
Q Consensus 308 ~A~~Al~-lng~~l~Gr~L~V~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i 386 (437)
-|..|-. |++....|+.+.|.++. . ..|||.||..-+..+.+.+-|+.| |+|....+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~--------------------~-a~l~V~nl~~~~sndll~~~f~~f-g~~e~av~ 63 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAM--------------------H-AELYVVNLMQGASNDLLEQAFRRF-GPIERAVA 63 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeec--------------------c-ceEEEEecchhhhhHHHHHhhhhc-Cccchhee
Confidence 3555655 88999999999999864 1 589999999999999999999995 99998777
Q ss_pred ecc-CCCcceEEEEEeCCHHHHHHHHhh
Q 013726 387 LGD-YHHSTRIAFVEFVMVIASSTLFIH 413 (437)
Q Consensus 387 ~kd-~g~srGfAFVeF~s~e~A~kal~~ 413 (437)
..| .++..|-++|+|...-.|.+|+..
T Consensus 64 ~vD~r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 64 KVDDRGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred eecccccccccchhhhhcchhHHHHHHH
Confidence 766 678889999999998777555443
No 165
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.18 E-value=0.018 Score=58.04 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=60.7
Q ss_pred CcEEEEecCCccchHHHHHHHHhcCC--CeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~G--~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
...+|||||-+.+|+++|.+...+.| .+.++++..++.. ++|||+|...+..+..+-++ |....|.|+.-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 35799999999999999999999877 5667777666543 69999999999999999999 88888988865553
No 166
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=0.058 Score=57.52 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=54.5
Q ss_pred cccEEEEEcCCcc--CC----HHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 352 CARTIYCTNIDKK--VT----QADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 352 ~~~tL~V~NLp~~--vt----eedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
-...|+|-|+|-- .. ..-|..+|+++ |+|..+.++.+ .|..+||.|++|.+..+|+.|....+++.+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~-gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKA-GKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhh-ccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 3468999999842 22 23456899996 99999999988 6679999999999999999998888876543
No 167
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=94.35 E-value=0.19 Score=41.19 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=36.5
Q ss_pred cEEEEEcCCccCCHHHHH----HHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCc
Q 013726 354 RTIYCTNIDKKVTQADVK----LFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEF 416 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLr----elF~~f~G-~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~ 416 (437)
..|+|.|||.+.+...|+ .+++. || .|.+|. .|-|+|.|.+.+.|.+|+.-+++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdN-CGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmeg 61 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDN-CGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEG 61 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHT-TT--EEE----------TT-EEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhc-cCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcc
Confidence 579999999999887665 55555 65 566652 25799999999999888776664
No 168
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=94.17 E-value=0.065 Score=54.32 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=58.7
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEE--------EEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCce--ec
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYR--------LRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFY--IL 419 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~--------v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~--~~ 419 (437)
...+|||.+||..+++++|.++|.+ ||.|.. +.|-++ ++.++|-|.|.|++..+|++|+..-..- ..
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3479999999999999999999998 798754 333334 6679999999999999998886655442 33
Q ss_pred cCchhhhhhhhc
Q 013726 420 HNPSIAWLEEFS 431 (437)
Q Consensus 420 ~~~~i~~~~~~s 431 (437)
..+++..|+.-.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 444455555443
No 169
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.76 E-value=0.07 Score=57.91 Aligned_cols=108 Identities=20% Similarity=0.208 Sum_probs=78.6
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 333 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~ 333 (437)
...++||+|+...+..+-++.+...||.|.++.... |||++|.....+.+|+. ++...++|..+.+..-...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~ 111 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQT 111 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhh
Confidence 446899999999999999999999999998886642 99999999999999998 8888888888877653211
Q ss_pred CCCC----------CCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhh
Q 013726 334 IAPV----------NPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 375 (437)
Q Consensus 334 ~~~~----------~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~ 375 (437)
+... ...+.|.. ..+-..|.|+|....+......+.
T Consensus 112 ~~n~~k~~~~~~~~~~~f~p~~------srr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 112 IENADKEKSIANKESHKFVPSS------SRRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred hcCccccccchhhhhcccCCch------hHHHHHhhccccchhHHHHHHHHh
Confidence 1110 01111211 135567788887777766666655
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.44 E-value=0.2 Score=49.73 Aligned_cols=60 Identities=23% Similarity=0.178 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCCeeEEEEeeCCCCC---ceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 271 EQLAALFVGCGQVVDCRICGDPNSV---LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 271 e~L~~~F~~~G~I~~vri~~d~~~s---~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
+++.+-..+||.|..|.|..++..+ .---||+|...++|.+|+- |||..++|+.+..++-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4677788899999999987776542 3357999999999999988 9999999998887764
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=93.33 E-value=0.44 Score=40.30 Aligned_cols=67 Identities=7% Similarity=0.049 Sum_probs=45.4
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEE-Eecc-C-------CCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR-LLGD-Y-------HHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~-i~kd-~-------g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
.+-|.|-+.|+. ....|.+.|++ ||.|.... +.++ . .....+--|+|.++.+|.+||..+...+...
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~-~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSS-FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHC-CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHh-cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCc
Confidence 467999999988 55678889999 59998774 1111 0 0123389999999999999999988766543
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.25 E-value=0.038 Score=53.72 Aligned_cols=60 Identities=22% Similarity=0.377 Sum_probs=49.3
Q ss_pred HHHHHHHh-cCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 271 EQLAALFV-GCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 271 e~L~~~F~-~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
+++...|+ +||+|..+.++.+... -.|-+||.|...++|.+|+. ||+..+.|++|....+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444445 8999999988765433 37899999999999999999 9999999999998875
No 173
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.79 E-value=0.63 Score=35.93 Aligned_cols=55 Identities=15% Similarity=0.312 Sum_probs=44.8
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCC--ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhh
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIH 413 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G--~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~ 413 (437)
..+|+|++++ +++.+||+.+|..||. ...+|..+.|.. |=|.|.+.+.|.+||.+
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-----cNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS-----CNVVFKDEETAARALVA 61 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc-----EEEEECCHHHHHHHHHc
Confidence 3689999996 5889999999998643 566777777755 77999999999998864
No 174
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.57 E-value=0.64 Score=49.83 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=62.5
Q ss_pred CHHHHHHHHH-hcCeEeeeeeeEEeccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhh-cCCceE
Q 013726 305 DEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES-VCGEVY 382 (437)
Q Consensus 305 ~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~-f~G~I~ 382 (437)
|.+-...+|+ ..+..++.+-.+|.+.+ ..+.|+++-||.+...|+++.||+. -|-.++
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~~--------------------kRcIvilREIpettp~e~Vk~lf~~encPk~i 205 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPNH--------------------KRCIVILREIPETTPIEVVKALFKGENCPKVI 205 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccCc--------------------ceeEEEEeecCCCChHHHHHHHhccCCCCCce
Confidence 3444555666 66666777666666543 2378889999999999999999984 266888
Q ss_pred EEEEeccCCCcceEEEEEeCCHHHHHHHHh
Q 013726 383 RLRLLGDYHHSTRIAFVEFVMVIASSTLFI 412 (437)
Q Consensus 383 ~v~i~kd~g~srGfAFVeF~s~e~A~kal~ 412 (437)
+|.+-.+++ =||+|++..||+.|..
T Consensus 206 scefa~N~n-----WyITfesd~DAQqAyk 230 (684)
T KOG2591|consen 206 SCEFAHNDN-----WYITFESDTDAQQAYK 230 (684)
T ss_pred eeeeeecCc-----eEEEeecchhHHHHHH
Confidence 998876666 6899999999977754
No 175
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.91 E-value=0.69 Score=37.85 Aligned_cols=53 Identities=19% Similarity=0.356 Sum_probs=40.6
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hc
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA 316 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-ln 316 (437)
...+|. .|..+...||.++|+.||.|. |.++.|. -|||.....+.|..|+. +.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-----EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-----cEEEEeecHHHHHHHHHHhc
Confidence 445665 999999999999999999975 6666653 69999999999999988 53
No 176
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.71 E-value=0.49 Score=53.26 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=63.3
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeee--eeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF--YPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~G--r~L~V~~s 330 (437)
...+.+++++|..++....|...|..||.|..+.+-. +.-|++|.|.+...++.|+. |.|..++| +.|.|.++
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 4567799999999999999999999999998876632 34599999999999999999 99999976 46777776
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
+
T Consensus 529 ~ 529 (975)
T KOG0112|consen 529 S 529 (975)
T ss_pred c
Confidence 4
No 177
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=91.59 E-value=0.17 Score=51.32 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=51.1
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCC--ceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G--~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
..++||+||-..+|++||.+..... | ++..+++..+ +|.++|||.|...+..+.++.+...-.-.+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~-G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i 149 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQST-GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI 149 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhh-hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee
Confidence 4689999999999999999888875 6 4555565554 788999999999988888777665444333
No 178
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.45 E-value=0.13 Score=53.96 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=63.3
Q ss_pred ccCCcEEEEecCCccc-hHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQV-TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~-tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
..+.++|-+.-.|+.. |-++|...|.+||.|..|.+-.... .|.|.|.+..+|..|....+..|+++.|+|.|.+
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~----~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL----HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh----hheeeeeccccccchhccccceecCceeEEEEec
Confidence 3455667777777764 5588999999999999998865533 7999999999999999999999999999999976
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 4
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.45 E-value=0.93 Score=35.01 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=43.3
Q ss_pred cEEEEecCCccchHHHHHHHHhcC---CCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGC---GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN 314 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~---G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~ 314 (437)
..|+|+++. +++.++++.+|..| .....+.++.|. -|-|.|.+.+.|.+||.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 579999996 57889999999988 234578888775 48899999999999986
No 180
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.44 E-value=0.26 Score=49.75 Aligned_cols=68 Identities=13% Similarity=0.282 Sum_probs=51.6
Q ss_pred ccEEEEEcCCccCCHHHH------HHHhhhcCCceEEEEEeccC---CCcceEE--EEEeCCHHHHHHHHhhcCceeccC
Q 013726 353 ARTIYCTNIDKKVTQADV------KLFFESVCGEVYRLRLLGDY---HHSTRIA--FVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedL------relF~~f~G~I~~v~i~kd~---g~srGfA--FVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
.+-+||-+||+.+..|++ .++|.+| |.|..|.|.++. +...+.+ ||+|.+.++|.++++..++-.+..
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQy-GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQY-GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhc-cceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 467899999998877773 2899995 999999998873 2222323 999999999999988877644433
No 181
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.30 E-value=0.32 Score=40.17 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=46.3
Q ss_pred EEEEEcCHHHHHHHHHhcCe--EeeeeeeEEeccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhh
Q 013726 299 AFIEFTDEEGARAALNLAGT--MLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 375 (437)
Q Consensus 299 aFVeF~~~e~A~~Al~lng~--~l~Gr~L~V~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~ 375 (437)
|.|.|.+.+-|++.+++..+ .+++..+.|..+.-..... .+-+-......++|.|.|||..+++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~-----~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHL-----QKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCc-----eEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999985444 4555555444321100000 000111133568999999999999999998876
No 182
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=90.08 E-value=0.27 Score=47.92 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=46.1
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--C--------CCcce----EEEEEeCCHHHHHHH
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--Y--------HHSTR----IAFVEFVMVIASSTL 410 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~--------g~srG----fAFVeF~s~e~A~ka 410 (437)
.+..||++|||+.+....|+++|+.| |.|-+|-+... . |..++ -|.|+|.+...|.++
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~y-GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~i 144 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQY-GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRI 144 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhc-cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHH
Confidence 45799999999999999999999995 99999988754 2 11222 467999999888544
No 183
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.82 E-value=2.3 Score=36.54 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=48.0
Q ss_pred cEEEEecCCcc-chHHHHHHHHhcC-CCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeee
Q 013726 257 RTVYVSDIDQQ-VTEEQLAALFVGC-GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF 322 (437)
Q Consensus 257 rtLfVgNLp~~-~tee~L~~~F~~~-G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~G 322 (437)
.++.|--.|+. ++.++|..+.+.+ ..|..+++++|...++-.+.+.|++.++|..-.. +||..+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444444444 5556666555554 4677889998877677789999999999999998 99987743
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.46 E-value=0.56 Score=43.61 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=44.3
Q ss_pred CCcEEEEecCCccchHHHHHHHHhc-CCCe---eEEEEeeCCCC----CceEEEEEEcCHHHHHHHHH-hcCeEeee
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVG-CGQV---VDCRICGDPNS----VLRFAFIEFTDEEGARAALN-LAGTMLGF 322 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~-~G~I---~~vri~~d~~~----s~GfaFVeF~~~e~A~~Al~-lng~~l~G 322 (437)
....|.|++||+++|++++.+.++. ++.- ..+.-...... .-.-|||.|.+.+++..-.. ++|..+..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 4568999999999999999887776 5655 23332222211 24579999999999988888 99988743
No 185
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.37 E-value=0.65 Score=43.16 Aligned_cols=68 Identities=6% Similarity=0.021 Sum_probs=43.6
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCce---EEEE--Eecc-CC-CcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEV---YRLR--LLGD-YH-HSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I---~~v~--i~kd-~g-~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
..+|.|++||+.+|++++++.+++++|.- .++. .... .. ..-.-|||.|.+.+++.......+++...
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 46999999999999999999888733655 3443 2222 11 13346999999999988877777665433
No 186
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.37 E-value=0.36 Score=47.10 Aligned_cols=73 Identities=26% Similarity=0.323 Sum_probs=57.2
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCC-CCCceEEEEEEcCHHHHHHHHH-h--cCe--EeeeeeeEEec
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEEGARAALN-L--AGT--MLGFYPVRVLP 329 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~-~~s~GfaFVeF~~~e~A~~Al~-l--ng~--~l~Gr~L~V~~ 329 (437)
..|||.||+..++.+.+...|+.||+|....++-|. ..+.+-++|+|...-.|.+|+. + .|. ...+++.-|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 679999999999999999999999999876665444 4468899999999999999987 4 222 23455555544
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.64 E-value=2.9 Score=37.71 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=53.4
Q ss_pred ccCCcEEEEecCCccch----HHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEE
Q 013726 253 EIIRRTVYVSDIDQQVT----EEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~t----ee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V 327 (437)
+..-.||.|+=|..++. -..+...++.||+|.+|..+.. --|.|.|.+..+|-+|+. +.. ..-|..+++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----QSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----ceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 44567888876655543 3344555678999999998754 379999999999999998 554 556777777
Q ss_pred eccC
Q 013726 328 LPSK 331 (437)
Q Consensus 328 ~~s~ 331 (437)
.|..
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 7754
No 188
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.59 E-value=2.6 Score=34.58 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=38.8
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHH---HHHHhhcCceeccC
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIAS---STLFIHTEFYILHN 421 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A---~kal~~~~~~~~~~ 421 (437)
...+|. +|.++...||.++|+.| |.|. |..+.|+ -|||...+.+.| ..++.....|.+.+
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspf-G~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~~~~~~~~y~i~t 72 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPF-GQIY-VSWINDT-----SAFVALHNRDQAKVVMNTLKKNSSYRIQT 72 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCC-CCEE-EEEECTT-----EEEEEECCCHHHHHHHHHHTT-SSSEEEE
T ss_pred eEEEEe-CchHhhhhhHHHHhccC-CcEE-EEEEcCC-----cEEEEeecHHHHHHHHHHhccCCceEEEE
Confidence 455566 99999999999999995 9875 5555443 499999998877 44455444444443
No 189
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=87.41 E-value=0.41 Score=51.62 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=59.1
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHh-cCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEe---eeeeeEE
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFV-GCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML---GFYPVRV 327 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~-~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l---~Gr~L~V 327 (437)
...+..|+|.||-.-.|.-+|++++. .+|.|....| |+- +..|||.|.+.++|.+-.. |+|..+ +++.|.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI--KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI--KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh--hcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 34567899999999999999999999 5677777633 221 3589999999999999988 999886 5667777
Q ss_pred ecc
Q 013726 328 LPS 330 (437)
Q Consensus 328 ~~s 330 (437)
.+.
T Consensus 517 df~ 519 (718)
T KOG2416|consen 517 DFV 519 (718)
T ss_pred eec
Confidence 664
No 190
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.54 E-value=2.6 Score=42.23 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=53.4
Q ss_pred CcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeee-eEEec
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYP-VRVLP 329 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~-L~V~~ 329 (437)
..=|-|-++|+.-. .-|..+|++||.|++.....+- .+-+|-|.+.-+|++||..||..|+|.. |-|++
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng----NwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG----NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC----ceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 34477778888755 4566789999999887665222 4899999999999999999999998763 44555
No 191
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=86.14 E-value=0.39 Score=51.77 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=48.9
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCc
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEF 416 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~ 416 (437)
...++.|+|.||=..+|..+|++++.+-||.|+.. + .| +-+..|||.|.+.++|.+....+|+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-W-mD--kIKShCyV~yss~eEA~atr~Alhn 503 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-W-MD--KIKSHCYVSYSSVEEAAATREALHN 503 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-H-HH--HhhcceeEecccHHHHHHHHHHHhc
Confidence 45678999999999999999999999877877776 2 22 2334699999999999655554443
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=83.71 E-value=2.3 Score=45.77 Aligned_cols=69 Identities=25% Similarity=0.415 Sum_probs=55.8
Q ss_pred CCcEEEEecCCccchHHHHHHHHh--cCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcC--eEeeeeeeEEe
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFV--GCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG--TMLGFYPVRVL 328 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~--~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng--~~l~Gr~L~V~ 328 (437)
.++.|.++-||..+..|+++.+|+ .|-.+.+|.+..+.+ =||.|++..+|+.|.+ |.. ..|.|++|...
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 456788999999999999999998 488899999876653 5899999999999987 532 34777776543
No 193
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=83.41 E-value=2.5 Score=42.15 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=36.7
Q ss_pred HHHHHHHhhhcCCceEEEEEeccCCC---cceEEEEEeCCHHHHHHHHhhcCc
Q 013726 367 QADVKLFFESVCGEVYRLRLLGDYHH---STRIAFVEFVMVIASSTLFIHTEF 416 (437)
Q Consensus 367 eedLrelF~~f~G~I~~v~i~kd~g~---srGfAFVeF~s~e~A~kal~~~~~ 416 (437)
++++.+-+++ ||+|..|.|....+. ..---||+|+..++|.+|+-..++
T Consensus 300 ede~keEceK-yg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnG 351 (378)
T KOG1996|consen 300 EDETKEECEK-YGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNG 351 (378)
T ss_pred HHHHHHHHHh-hcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCC
Confidence 4578889999 599999999877433 222479999999999777655444
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=83.19 E-value=8.3 Score=33.15 Aligned_cols=61 Identities=7% Similarity=0.072 Sum_probs=46.1
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhh
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIH 413 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~ 413 (437)
...+.+-..|..++-++|..+.+.+...|..++|.+|....+-.+.+.|.+.++|......
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~ 73 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEE 73 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHH
Confidence 3455666666667777787777776567889999998666777899999999999765443
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=82.09 E-value=0.57 Score=47.37 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=59.6
Q ss_pred CcEEEEecCCccchHHHHHH---HHhcCCCeeEEEEeeCCC--C---CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeE
Q 013726 256 RRTVYVSDIDQQVTEEQLAA---LFVGCGQVVDCRICGDPN--S---VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 326 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~---~F~~~G~I~~vri~~d~~--~---s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~ 326 (437)
..-+||-+|+....++.+.+ .|.+||.|..+.+..++. . +..-++|.|...++|..||. .+|..++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 34588889998876665543 688899999998877662 1 23358999999999999999 999999999977
Q ss_pred EeccC
Q 013726 327 VLPSK 331 (437)
Q Consensus 327 V~~s~ 331 (437)
.....
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 76654
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.82 E-value=4.3 Score=42.77 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=58.0
Q ss_pred CcEEEEecCCccchHHHHHHHHhcC-CCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEee
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGC-GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG 321 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~-G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~ 321 (437)
.+.|.|--+|..+|-.||..|...+ -.|..+++++|....+=...|.|++.++|....+ +||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 7889999999999999999998854 5788999999776566678999999999999998 9998874
No 197
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=79.50 E-value=23 Score=35.51 Aligned_cols=156 Identities=11% Similarity=0.119 Sum_probs=94.3
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCC---------CCceEEEEEEcCHHHHHHHHH-----hcC--e
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN---------SVLRFAFIEFTDEEGARAALN-----LAG--T 318 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~---------~s~GfaFVeF~~~e~A~~Al~-----lng--~ 318 (437)
.+|.|...|+..+++--.+...|..||+|++|.++.+.. +...-..+.|-+.+.+..... |.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 457799999999999999999999999999999986651 135678899999988776532 222 2
Q ss_pred EeeeeeeEEeccCC-----CCCCCCCCCC-----C--CChhhhcccccEEEEEcCCccCCHHH-HHHHhh---hcCC---
Q 013726 319 MLGFYPVRVLPSKT-----AIAPVNPTFL-----P--RTEDEREMCARTIYCTNIDKKVTQAD-VKLFFE---SVCG--- 379 (437)
Q Consensus 319 ~l~Gr~L~V~~s~~-----~~~~~~~~~~-----p--r~~~~~~~~~~tL~V~NLp~~vteed-LrelF~---~f~G--- 379 (437)
.+....|.+....- .......... + .-.-.....++.|.|. +...+.+++ +.+.+. . -+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~-~~n~R 171 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKN-SNNKR 171 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhcc-CCCce
Confidence 35555666555321 1000000000 0 0000113456777776 334443333 333332 1 13
Q ss_pred -ceEEEEEeccC----CCcceEEEEEeCCHHHHHHHHh
Q 013726 380 -EVYRLRLLGDY----HHSTRIAFVEFVMVIASSTLFI 412 (437)
Q Consensus 380 -~I~~v~i~kd~----g~srGfAFVeF~s~e~A~kal~ 412 (437)
-|++|.++.-. .-+..||.++|-+..-|...+.
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~d 209 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLD 209 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHH
Confidence 46778777542 2277799999999988865543
No 198
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=79.07 E-value=3.7 Score=36.20 Aligned_cols=110 Identities=10% Similarity=-0.054 Sum_probs=70.5
Q ss_pred chHHHHHHHHhcC-CCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccCCCCCCCCCCCCCCCh
Q 013726 268 VTEEQLAALFVGC-GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTE 346 (437)
Q Consensus 268 ~tee~L~~~F~~~-G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~~~~~~~~~~~~pr~~ 346 (437)
.+-..|...+... +....+.+..- +.++..+.|.+.+++.+++......++|..+.+.............
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l---~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~------ 99 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDL---GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVK------ 99 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEe---CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccc------
Confidence 4455555555432 22222333211 2369999999999999999977778888888887764221111110
Q ss_pred hhhcccccEEEEEcCCcc-CCHHHHHHHhhhcCCceEEEEEecc
Q 013726 347 DEREMCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGD 389 (437)
Q Consensus 347 ~~~~~~~~tL~V~NLp~~-vteedLrelF~~f~G~I~~v~i~kd 389 (437)
-....-=|.|.|||.. .+++-++.+-+. +|++..+.....
T Consensus 100 --~~~~~vWVri~glP~~~~~~~~~~~i~~~-iG~~i~vD~~t~ 140 (153)
T PF14111_consen 100 --FEHIPVWVRIYGLPLHLWSEEILKAIGSK-IGEPIEVDENTL 140 (153)
T ss_pred --eeccchhhhhccCCHHHhhhHHHHHHHHh-cCCeEEEEcCCC
Confidence 0112245778999987 677788888887 599999876544
No 199
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=76.15 E-value=1.2 Score=43.60 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=36.4
Q ss_pred HHHHHHhh-hcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCc
Q 013726 368 ADVKLFFE-SVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEF 416 (437)
Q Consensus 368 edLrelF~-~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~ 416 (437)
+||...|+ + ||+|+.+.|..+ ..+-+|=+||.|...++|++|+...+.
T Consensus 83 Ed~f~E~~~k-ygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnn 132 (260)
T KOG2202|consen 83 EDVFTELEDK-YGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNN 132 (260)
T ss_pred HHHHHHHHHH-hhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcC
Confidence 44555555 5 599999988777 345888999999999999888665444
No 200
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=75.26 E-value=6.1 Score=35.66 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=41.5
Q ss_pred cccccEEEEEcC----CccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCc
Q 013726 350 EMCARTIYCTNI----DKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEF 416 (437)
Q Consensus 350 ~~~~~tL~V~NL----p~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~ 416 (437)
..+..||.|+=| ...-+.+.+-.-++. ||+|.+|..... --|.|.|++..+|-+|....+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~-fGpI~SVT~cGr-----qsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSV-FGPIQSVTLCGR-----QSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHh-cCCcceeeecCC-----ceEEEEehhhHHHHHHHHhhcC
Confidence 344578888654 444444445566666 599999987542 3599999999999776655444
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=75.19 E-value=7.7 Score=36.41 Aligned_cols=59 Identities=24% Similarity=0.213 Sum_probs=43.8
Q ss_pred hHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hc--CeEeeeeeeEEeccC
Q 013726 269 TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA--GTMLGFYPVRVLPSK 331 (437)
Q Consensus 269 tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-ln--g~~l~Gr~L~V~~s~ 331 (437)
..+.|+++|..++.+..+...+. -+=..|.|.+.++|.+|.. ++ +..+.|..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 34789999999998887776543 3568999999999999998 88 899999999998874
No 202
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.79 E-value=12 Score=29.51 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=33.4
Q ss_pred cchHHHHHHHHhcCC-----CeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 267 QVTEEQLAALFVGCG-----QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 267 ~~tee~L~~~F~~~G-----~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
.++..+|..++...+ .|-.+.+.. .|.||+-.. +.|..+++ |++..+.|+++.|+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 578888999988664 344566643 389999865 57788888 999999999999875
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.30 E-value=12 Score=39.52 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=53.8
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcC
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTE 415 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~ 415 (437)
.+.|+|-.+|..+|-.||..+...+.-.|..+++++|.-..+=...|.|.+.++|......-+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcC
Confidence 589999999999999999999998878899999999744456688999999999977655443
No 204
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=67.22 E-value=33 Score=34.40 Aligned_cols=49 Identities=6% Similarity=0.197 Sum_probs=37.0
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCe-eEEEEeeCCCCCceEEEEEEcCHH
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQV-VDCRICGDPNSVLRFAFIEFTDEE 307 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I-~~vri~~d~~~s~GfaFVeF~~~e 307 (437)
..+-|+++||+.++.-.+|+..+...|-+ .++.+ ++..|-||..|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee----ecCCcceeEecCCcc
Confidence 34559999999999999999999877643 34444 234678999997643
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=63.27 E-value=4.4 Score=45.71 Aligned_cols=72 Identities=29% Similarity=0.315 Sum_probs=61.2
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEe--eeeeeEEeccCC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML--GFYPVRVLPSKT 332 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l--~Gr~L~V~~s~~ 332 (437)
.+.++-|.+-+.+...|..+|..||.|.+.+..++-+ .|.|+|.+.+.|..|+. ++|..+ -|-+.+|..++.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 4456667777888899999999999999999988876 89999999999999999 999874 577788877764
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=63.26 E-value=11 Score=37.83 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=49.3
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..=|-|-++|+... .-|..+|++ ||+|....... +| .+-+|.|.+.-+|++||...+.+|..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~-cG~Vvkhv~~~-ng---NwMhirYssr~~A~KALskng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSR-CGEVVKHVTPS-NG---NWMHIRYSSRTHAQKALSKNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHh-hCeeeeeecCC-CC---ceEEEEecchhHHHHhhhhcCeeeccc
Confidence 35677778887654 457788998 79998877663 33 289999999999999999999887766
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=63.15 E-value=51 Score=25.73 Aligned_cols=54 Identities=24% Similarity=0.283 Sum_probs=41.9
Q ss_pred cchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEE
Q 013726 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (437)
Q Consensus 267 ~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V 327 (437)
.++-++++..+..|+- .++..|+. | =||.|.+..+|.++.. .+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t---G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT---G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC---E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4778899999999964 23334443 3 3899999999999999 8999888877654
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=62.06 E-value=6.8 Score=43.07 Aligned_cols=59 Identities=20% Similarity=0.125 Sum_probs=48.3
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
..++||+|+-..+.++-++.+... ||-|.++.... |||.+|..+..++.++.....+..
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~ 98 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNI 98 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhh-CCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCC
Confidence 469999999999999999999996 99999987655 999999999877666555444433
No 209
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=59.75 E-value=31 Score=28.26 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=43.1
Q ss_pred EEEEEcCCccCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHh
Q 013726 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFI 412 (437)
Q Consensus 355 tL~V~NLp~~vteedLrelF~~f~G-~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~ 412 (437)
.-|.--++..++..+|++.++.+|| .|.+|+...-... .--|||.+..-++|..+..
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~-~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG-EKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC-cEEEEEEeCCCCcHHHHHH
Confidence 4566668899999999999999888 6777766654322 2369999999888866643
No 210
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=59.50 E-value=6.1 Score=40.13 Aligned_cols=70 Identities=9% Similarity=0.182 Sum_probs=54.3
Q ss_pred cEEEEEcCCccCCHHHHH---HHhhhcCCceEEEEEeccC--CC---cceEEEEEeCCHHHHHHHHhhcCceeccCchh
Q 013726 354 RTIYCTNIDKKVTQADVK---LFFESVCGEVYRLRLLGDY--HH---STRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLr---elF~~f~G~I~~v~i~kd~--g~---srGfAFVeF~s~e~A~kal~~~~~~~~~~~~i 424 (437)
+-+||-+|+..+..+.+. +.|.+| |.|..|.+.++. .. ..--++|+|...++|..++...+.+..+...+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqy-gki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQY-GKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCccccccc-ccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 567888888877666554 678885 999999998864 11 12248999999999999999999988887663
No 211
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=59.48 E-value=8.3 Score=40.40 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=41.3
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCce-EEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcC
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEV-YRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTE 415 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I-~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~ 415 (437)
+++|++||.+.++..||..+|... .+ .+-.++. ..|||||.+.+...|.++.....
T Consensus 2 nklyignL~p~~~psdl~svfg~a--k~~~~g~fl~----k~gyafvd~pdq~wa~kaie~~s 58 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA--KIPGSGQFLV----KSGYAFVDCPDQQWANKAIETLS 58 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc--cCCCCcceee----ecceeeccCCchhhhhhhHHhhc
Confidence 579999999999999999999863 11 1111111 45699999999999977765544
No 212
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.78 E-value=23 Score=30.70 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=28.2
Q ss_pred EEEEEcCCcc---------CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHH
Q 013726 355 TIYCTNIDKK---------VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVI 405 (437)
Q Consensus 355 tL~V~NLp~~---------vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e 405 (437)
+++|-|++.+ .+.++|++.|..| ..++ ++.+.+...++|++.|+|...-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f-~p~k-v~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEF-NPLK-VKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH----SE-EEEEEETTEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhc-CCce-eEECcCCCCCcEEEEEEECCCh
Confidence 6677777544 3558899999996 6665 5555555568899999998843
No 213
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=55.04 E-value=44 Score=26.87 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=41.4
Q ss_pred EEEEEcCCccCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHH
Q 013726 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 355 tL~V~NLp~~vteedLrelF~~f~G-~I~~v~i~kd~g~srGfAFVeF~s~e~A~ka 410 (437)
.-|+-.++..++..+|+..++..|| .|.+|+...-.+. .--|||.+..-+.|..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~-~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG-EKKAYVKLAEEYAAEEI 70 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC-ceEEEEEECCCCcHHHH
Confidence 5677778999999999999998877 6777766544322 22699999988877554
No 214
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.78 E-value=19 Score=31.14 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=34.0
Q ss_pred EEEEecCCcc---------chHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcC-HHHHHHHHHhc
Q 013726 258 TVYVSDIDQQ---------VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTD-EEGARAALNLA 316 (437)
Q Consensus 258 tLfVgNLp~~---------~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~-~e~A~~Al~ln 316 (437)
++.|-|++.. .+.++|++.|+.|.++. ++.+.++....|++.|+|.. -..-..|++|.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHHHH
Confidence 4556666443 35578999999998864 66667777778999999975 55566666643
No 215
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=50.60 E-value=61 Score=36.90 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=10.5
Q ss_pred eeeehhhcccccchhhhh
Q 013726 72 LSLRLFSFIDQSKVKIFE 89 (437)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~ 89 (437)
++.-+=..||+.|++=+|
T Consensus 456 ~~~liD~~vdkak~eese 473 (1102)
T KOG1924|consen 456 LTELIDKMVDKAKAEESE 473 (1102)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344556677777666
No 216
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.52 E-value=46 Score=34.85 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=50.8
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCC-eeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeee
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFY 323 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~-I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr 323 (437)
.-...|-|-|+|.....+||...|+.|+. -..|+++.|. .+|-.|.+...|..||.|.-..+.-+
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~kh~~lKiR 454 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTLKHDWLKIR 454 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhccCceEEee
Confidence 34567999999999999999999999863 3567777664 79999999999999999633333333
No 217
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.89 E-value=48 Score=34.76 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=51.7
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP 422 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~ 422 (437)
-...|-|-|+|.....+||...|+.|-+.=-.|.++.|+. ||..|.+...|..+|...|-+..-.|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdth-----alaVFss~~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTH-----ALAVFSSVNRAAEALTLKHDWLKIRP 455 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecce-----eEEeecchHHHHHHhhccCceEEeee
Confidence 3468899999999999999999999733334555555544 99999999999999988777665553
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.41 E-value=90 Score=34.28 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=55.6
Q ss_pred ccCCcEEEEecCCcc-chHHHHHHHHhcC----CCeeEEEEeeCCC-----------CC---------------------
Q 013726 253 EIIRRTVYVSDIDQQ-VTEEQLAALFVGC----GQVVDCRICGDPN-----------SV--------------------- 295 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~-~tee~L~~~F~~~----G~I~~vri~~d~~-----------~s--------------------- 295 (437)
...++.|-|-|+.|. +...+|.-+|.+| |.|.+|.|....- ++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456788999999997 7788999999876 6899998853210 00
Q ss_pred -----------------ceEEEEEEcCHHHHHHHHH-hcCeEeeee
Q 013726 296 -----------------LRFAFIEFTDEEGARAALN-LAGTMLGFY 323 (437)
Q Consensus 296 -----------------~GfaFVeF~~~e~A~~Al~-lng~~l~Gr 323 (437)
-=||.|+|.+.+.|.+... |+|..+..-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 1289999999999999999 999998643
No 219
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=35.28 E-value=88 Score=28.35 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=41.0
Q ss_pred cEEEEEcCC------ccCCH---HHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 354 RTIYCTNID------KKVTQ---ADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 354 ~tL~V~NLp------~~vte---edLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
.||.|.=.. ...++ .+|.+.|.. ||++.-+|+..+ --.|+|.+-++|-+|+.....-+.+.
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~-~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~ 97 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQ-YGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGR 97 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHC-CS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTE
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHh-CCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCE
Confidence 566666554 12333 356677777 599998887653 47899999999999998887755444
No 220
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=34.97 E-value=77 Score=26.76 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=29.5
Q ss_pred ccCCHHHHHHHhhhcCCceEEEEEecc----CC--CcceEEEEEeCCHHHHHHH
Q 013726 363 KKVTQADVKLFFESVCGEVYRLRLLGD----YH--HSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 363 ~~vteedLrelF~~f~G~I~~v~i~kd----~g--~srGfAFVeF~s~e~A~ka 410 (437)
.+.+..+|++-+.+.++.=....++.. +| .++|||.| |++.+.|++.
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 367788888777766663333333322 44 48888877 7888777553
No 221
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=28.86 E-value=1.3e+02 Score=28.17 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=34.5
Q ss_pred CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcC
Q 013726 366 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTE 415 (437)
Q Consensus 366 teedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~ 415 (437)
..+.|+++|..+ +.+.....++..+ =..|.|.+.++|.++....+
T Consensus 8 ~~~~l~~l~~~~-~~~~~~~~L~sFr----Ri~v~f~~~~~A~~~r~~l~ 52 (184)
T PF04847_consen 8 NLAELEELFSTY-DPPVQFSPLKSFR----RIRVVFESPESAQRARQLLH 52 (184)
T ss_dssp -HHHHHHHHHTT--SS-EEEEETTTT----EEEEE-SSTTHHHHHHHTST
T ss_pred hHHHHHHHHHhc-CCceEEEEcCCCC----EEEEEeCCHHHHHHHHHHhc
Confidence 457899999996 9999999998877 47899999999987776655
No 222
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=28.32 E-value=93 Score=27.24 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=29.3
Q ss_pred cCCHHHHHHHhhhcCCceEEEEEec----c--CCCcceEEEEEeCCHHHHHHH
Q 013726 364 KVTQADVKLFFESVCGEVYRLRLLG----D--YHHSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 364 ~vteedLrelF~~f~G~I~~v~i~k----d--~g~srGfAFVeF~s~e~A~ka 410 (437)
.++.+||++-+.+.|-.-.++.++. . .|++.|||.| |++.+.|.+.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 5677888877766543322222222 2 4568999977 8888888653
No 223
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=28.10 E-value=36 Score=33.39 Aligned_cols=27 Identities=41% Similarity=0.639 Sum_probs=19.8
Q ss_pred eeehhhcccccchhhhhhhhhhhhhhhhh
Q 013726 73 SLRLFSFIDQSKVKIFERVNQVQEGKKER 101 (437)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (437)
-|+-.||..|+||+||.| +...+.++|
T Consensus 16 ~l~sls~~t~s~~~iFDR--~~KR~qrdr 42 (325)
T KOG2940|consen 16 FLASLSFSTESKVKIFDR--DLKRIQRDR 42 (325)
T ss_pred HHHHhhccchhhhHhhhh--HHHHHHHhH
Confidence 367789999999999998 334444444
No 224
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=27.52 E-value=1.2e+02 Score=27.01 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=29.1
Q ss_pred ccCCHHHHHHHhhhcCC-ceEEEEEec----cCC--CcceEEEEEeCCHHHHHH
Q 013726 363 KKVTQADVKLFFESVCG-EVYRLRLLG----DYH--HSTRIAFVEFVMVIASST 409 (437)
Q Consensus 363 ~~vteedLrelF~~f~G-~I~~v~i~k----d~g--~srGfAFVeF~s~e~A~k 409 (437)
.+.+..||++-+.+.|+ .=.++.++. .+| .+.|||.| |++.+.|.+
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 36788899988887767 222222222 244 48888877 788777744
No 225
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=26.49 E-value=2.1e+02 Score=23.24 Aligned_cols=47 Identities=9% Similarity=0.141 Sum_probs=28.2
Q ss_pred ccCCHHHHHHHhhhcCCc----eEEEEEeccCC--CcceEEEEEeCCHHHHHHH
Q 013726 363 KKVTQADVKLFFESVCGE----VYRLRLLGDYH--HSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 363 ~~vteedLrelF~~f~G~----I~~v~i~kd~g--~srGfAFVeF~s~e~A~ka 410 (437)
.+.+.+||++-+.+.++. |.-..+...+| .+.|||.| |++.+.+++.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 466788888887766552 22223333355 47888877 8888877543
No 226
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=24.47 E-value=1.5e+02 Score=29.91 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=45.4
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccC---------CCcceEEEEEeCCHHHHH
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---------HHSTRIAFVEFVMVIASS 408 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~---------g~srGfAFVeF~s~e~A~ 408 (437)
.++.|.+.|+..+++-..+-..|-+| |+|++|.+..+. .+...-..+.|-+.+.+-
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~-~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKF-GPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhcc-CceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 35789999999999999999999995 999999998764 123446788999888773
No 227
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=24.32 E-value=2.1e+02 Score=25.85 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=39.5
Q ss_pred EEEEEcCCccCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHH
Q 013726 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 355 tL~V~NLp~~vteedLrelF~~f~G-~I~~v~i~kd~g~srGfAFVeF~s~e~A~ka 410 (437)
.-|+--++..++..+|++.++..|| .|..|......+. .--|||.+....+|..+
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g-~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDG-LKKAYIRLSPDVDALDV 138 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCC-ceEEEEEECCCCcHHHH
Confidence 5666678899999999999998776 5677766554332 22699999877666443
No 228
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=23.52 E-value=1.3e+02 Score=24.88 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=27.7
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCC-ceEEEEEecc
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGD 389 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G-~I~~v~i~kd 389 (437)
..-|+-.++..+|..||++.++.+|| .|..|+...-
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~ 56 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNV 56 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEe
Confidence 35666678899999999999999888 5666655543
No 229
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=23.34 E-value=2.1e+02 Score=32.83 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=8.2
Q ss_pred heeeeeeehhhcccc
Q 013726 68 FQFQLSLRLFSFIDQ 82 (437)
Q Consensus 68 ~~~~~~~~~~~~~~~ 82 (437)
+.|.|.+-+-.+||+
T Consensus 448 yr~~l~id~~~liD~ 462 (1102)
T KOG1924|consen 448 YRFRLDIDLTELIDK 462 (1102)
T ss_pred hhhcccCcHHHHHHH
Confidence 344455556666664
No 230
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=22.86 E-value=33 Score=36.60 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=44.8
Q ss_pred EEEEcCCccC-CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHh-hcCceeccCchhhhhhh
Q 013726 356 IYCTNIDKKV-TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFI-HTEFYILHNPSIAWLEE 429 (437)
Q Consensus 356 L~V~NLp~~v-teedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~-~~~~~~~~~~~i~~~~~ 429 (437)
|-+.-.|+.+ |-.+|...|.+| |+|..|.+-.... -|.|+|.+..+|-+|-. +.--+-....++.|...
T Consensus 375 l~lek~~~glnt~a~ln~hfA~f-G~i~n~qv~~~~~----~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQF-GEIENIQVDYSSL----HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhc-CccccccccCchh----hheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3344445544 568899999995 9999998865533 58999999998844433 33333333335666554
No 231
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=21.74 E-value=41 Score=38.35 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=46.4
Q ss_pred EEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHH---HhhcCceeccCc
Q 013726 357 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTL---FIHTEFYILHNP 422 (437)
Q Consensus 357 ~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~ka---l~~~~~~~~~~~ 422 (437)
++.|.+-..+-.-|..+|++| |.|.+.+.+++.+ .|.|+|.+.+.|-.| +...+-...|-|
T Consensus 302 ~~~nn~v~~tSssL~~l~s~y-g~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~P 365 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDY-GSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAP 365 (1007)
T ss_pred hhhcccccchHHHHHHHHHhh-cchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCc
Confidence 344455667778899999996 9999999999987 799999999988544 444444555555
No 232
>CHL00030 rpl23 ribosomal protein L23
Probab=20.78 E-value=1.5e+02 Score=24.68 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=28.2
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCC-ceEEEEEecc
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGD 389 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G-~I~~v~i~kd 389 (437)
..-|+--++..++..+|++.++.+|| .|..|....-
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 35667778899999999999999887 5777766544
Done!