Query 013726
Match_columns 437
No_of_seqs 423 out of 1934
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 15:58:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.4E-28 4.9E-33 230.9 19.0 162 254-428 13-179 (213)
2 1l3k_A Heterogeneous nuclear r 100.0 2.3E-28 8E-33 223.7 18.2 168 252-428 9-181 (196)
3 1fxl_A Paraneoplastic encephal 100.0 6.4E-28 2.2E-32 214.3 19.3 151 256-421 2-157 (167)
4 3md3_A Nuclear and cytoplasmic 100.0 8.5E-28 2.9E-32 213.3 18.9 159 257-428 1-165 (166)
5 1b7f_A Protein (SXL-lethal pro 100.0 9E-28 3.1E-32 214.2 17.5 150 255-419 2-156 (168)
6 3nmr_A Cugbp ELAV-like family 100.0 7.1E-28 2.4E-32 215.9 16.9 149 255-417 2-159 (175)
7 2qfj_A FBP-interacting repress 99.9 6.9E-28 2.3E-32 223.8 13.8 174 251-428 23-203 (216)
8 2cjk_A Nuclear polyadenylated 99.9 6.7E-28 2.3E-32 215.2 12.3 158 255-428 2-164 (167)
9 3tyt_A Heterogeneous nuclear r 99.9 5.5E-27 1.9E-31 220.1 18.3 164 255-422 3-193 (205)
10 2g4b_A Splicing factor U2AF 65 99.9 8.5E-26 2.9E-30 202.4 16.7 147 255-420 3-162 (172)
11 2ghp_A U4/U6 snRNA-associated 99.9 6.2E-26 2.1E-30 221.4 14.0 164 255-427 116-288 (292)
12 2yh0_A Splicing factor U2AF 65 99.9 3.1E-25 1.1E-29 203.2 17.8 169 255-428 3-192 (198)
13 1fje_B Nucleolin RBD12, protei 99.9 5.2E-26 1.8E-30 204.9 10.7 160 253-428 10-172 (175)
14 2ghp_A U4/U6 snRNA-associated 99.9 2.3E-25 7.8E-30 217.4 16.0 147 251-419 36-184 (292)
15 3sde_A Paraspeckle component 1 99.9 4.1E-25 1.4E-29 213.7 16.7 137 253-414 19-157 (261)
16 3pgw_A U1-A; protein-RNA compl 99.9 7.5E-25 2.6E-29 212.7 18.1 171 253-428 6-281 (282)
17 3smz_A Protein raver-1, ribonu 99.9 1.3E-24 4.3E-29 211.3 18.7 162 255-428 94-262 (284)
18 2adc_A Polypyrimidine tract-bi 99.9 1.7E-24 5.8E-29 205.2 19.0 161 253-420 31-215 (229)
19 3smz_A Protein raver-1, ribonu 99.9 2.7E-24 9.1E-29 209.0 18.0 152 251-428 17-173 (284)
20 1qm9_A Polypyrimidine tract-bi 99.9 1.3E-24 4.6E-29 200.0 14.5 158 255-419 2-183 (198)
21 4f25_A Polyadenylate-binding p 99.8 1.6E-20 5.3E-25 160.0 9.5 109 255-369 4-113 (115)
22 2kn4_A Immunoglobulin G-bindin 99.7 8.1E-18 2.8E-22 150.0 11.9 135 285-428 2-148 (158)
23 4fxv_A ELAV-like protein 1; RN 99.7 1E-16 3.5E-21 133.1 10.7 78 254-331 17-97 (99)
24 2i2y_A Fusion protein consists 99.7 1.6E-16 5.3E-21 140.8 10.1 137 287-428 4-146 (150)
25 3lqv_A PRE-mRNA branch site pr 99.6 2.9E-16 1E-20 132.6 9.2 102 254-379 6-108 (115)
26 2hvz_A Splicing factor, argini 99.6 2E-16 6.9E-21 130.6 7.1 99 257-362 1-100 (101)
27 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.2E-15 4.1E-20 126.4 11.4 80 253-332 12-92 (103)
28 2cq3_A RNA-binding protein 9; 99.6 1.5E-15 5.2E-20 125.7 11.9 80 253-332 12-92 (103)
29 3s8s_A Histone-lysine N-methyl 99.6 8.9E-16 3E-20 130.0 10.4 78 254-331 4-84 (110)
30 2lxi_A RNA-binding protein 10; 99.6 4.7E-16 1.6E-20 126.9 6.5 76 256-331 1-81 (91)
31 2dgo_A Cytotoxic granule-assoc 99.6 3.9E-15 1.3E-19 125.7 12.3 84 252-335 11-97 (115)
32 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.9E-15 6.6E-20 120.4 9.3 78 254-331 5-85 (85)
33 2lkz_A RNA-binding protein 5; 99.6 6.7E-16 2.3E-20 127.6 6.6 79 254-332 7-94 (95)
34 3s7r_A Heterogeneous nuclear r 99.6 3.1E-15 1.1E-19 120.0 10.3 79 252-330 7-87 (87)
35 2cpz_A CUG triplet repeat RNA- 99.6 4.5E-15 1.5E-19 125.4 11.8 80 253-332 22-104 (115)
36 2cqc_A Arginine/serine-rich sp 99.6 3.3E-15 1.1E-19 121.4 10.4 79 253-331 12-93 (95)
37 2cpf_A RNA binding motif prote 99.6 2.6E-15 9E-20 123.1 9.8 79 255-333 4-88 (98)
38 2dgx_A KIAA0430 protein; RRM d 99.6 2.9E-15 1E-19 123.0 10.0 77 255-332 8-89 (96)
39 3md1_A Nuclear and cytoplasmic 99.6 3.8E-15 1.3E-19 118.1 10.4 76 256-331 1-79 (83)
40 2ywk_A Putative RNA-binding pr 99.6 2.3E-15 7.8E-20 122.6 9.1 79 253-331 13-93 (95)
41 3p5t_L Cleavage and polyadenyl 99.6 8E-16 2.7E-20 124.8 6.2 76 257-332 2-82 (90)
42 2cq0_A Eukaryotic translation 99.6 3.5E-15 1.2E-19 123.5 10.3 80 253-332 12-94 (103)
43 2e5h_A Zinc finger CCHC-type a 99.6 2.6E-15 9E-20 122.0 9.3 79 253-331 13-94 (94)
44 1whw_A Hypothetical protein ri 99.6 4.6E-15 1.6E-19 121.8 10.8 80 254-333 6-88 (99)
45 3ucg_A Polyadenylate-binding p 99.6 2.1E-15 7.3E-20 121.1 8.4 78 255-332 5-84 (89)
46 1x4a_A Splicing factor, argini 99.6 7E-15 2.4E-19 123.1 11.9 79 253-332 19-98 (109)
47 3bs9_A Nucleolysin TIA-1 isofo 99.6 4E-15 1.4E-19 119.0 9.8 77 255-331 5-84 (87)
48 2dnz_A Probable RNA-binding pr 99.6 6.1E-15 2.1E-19 120.0 10.9 78 255-332 4-84 (95)
49 2dgs_A DAZ-associated protein 99.6 6E-15 2.1E-19 121.3 10.8 80 253-332 7-88 (99)
50 2dgv_A HnRNP M, heterogeneous 99.6 3.8E-15 1.3E-19 120.5 9.4 79 254-332 6-85 (92)
51 1s79_A Lupus LA protein; RRM, 99.6 1.7E-15 5.9E-20 126.8 7.5 79 253-331 8-87 (103)
52 2err_A Ataxin-2-binding protei 99.6 2E-15 6.8E-20 127.1 7.9 79 253-331 26-105 (109)
53 2dnm_A SRP46 splicing factor; 99.6 2.7E-15 9.4E-20 124.2 8.4 80 253-332 10-92 (103)
54 2khc_A Testis-specific RNP-typ 99.6 6.4E-15 2.2E-19 124.9 10.8 79 253-331 37-118 (118)
55 2do4_A Squamous cell carcinoma 99.6 7.2E-15 2.5E-19 121.0 10.6 79 253-331 14-94 (100)
56 2d9p_A Polyadenylate-binding p 99.6 4.8E-15 1.6E-19 122.7 9.6 80 253-332 12-92 (103)
57 2cph_A RNA binding motif prote 99.6 5.8E-15 2E-19 122.7 10.1 80 253-332 12-96 (107)
58 2dnh_A Bruno-like 5, RNA bindi 99.6 8E-15 2.7E-19 121.6 10.8 80 253-332 12-96 (105)
59 1x5u_A Splicing factor 3B subu 99.6 5.7E-15 1.9E-19 122.6 9.8 80 253-332 12-94 (105)
60 2x1f_A MRNA 3'-END-processing 99.6 6.8E-15 2.3E-19 120.4 10.0 77 256-332 2-81 (96)
61 3ns6_A Eukaryotic translation 99.6 3.4E-15 1.2E-19 123.7 8.2 77 255-331 5-91 (100)
62 1x5t_A Splicing factor 3B subu 99.6 6.3E-15 2.2E-19 120.2 9.6 78 255-332 4-85 (96)
63 2cq4_A RNA binding motif prote 99.6 4.3E-15 1.5E-19 125.4 8.7 79 253-331 22-102 (114)
64 1x4h_A RNA-binding protein 28; 99.6 9.4E-15 3.2E-19 122.3 10.6 80 253-332 12-100 (111)
65 3ulh_A THO complex subunit 4; 99.6 7.1E-15 2.4E-19 122.4 9.7 79 253-331 26-106 (107)
66 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.4E-15 1.8E-19 122.1 8.7 80 253-332 9-91 (102)
67 1p27_B RNA-binding protein 8A; 99.6 6.4E-15 2.2E-19 122.5 9.2 79 254-332 21-102 (106)
68 4a8x_A RNA-binding protein wit 99.6 6.6E-15 2.3E-19 117.8 9.0 77 255-331 3-83 (88)
69 1sjq_A Polypyrimidine tract-bi 99.6 6.6E-15 2.2E-19 124.1 9.2 76 253-332 13-91 (105)
70 2la6_A RNA-binding protein FUS 99.6 7.6E-15 2.6E-19 120.8 9.3 78 253-330 10-98 (99)
71 2cqd_A RNA-binding region cont 99.6 1.3E-14 4.6E-19 122.7 11.1 81 252-333 13-96 (116)
72 2jrs_A RNA-binding protein 39; 99.6 9.5E-15 3.3E-19 122.9 9.8 79 253-331 23-104 (108)
73 1x5s_A Cold-inducible RNA-bind 99.6 5.7E-15 2E-19 121.9 8.3 80 253-332 9-91 (102)
74 2fy1_A RNA-binding motif prote 99.6 1.3E-14 4.4E-19 123.6 10.7 80 254-333 5-86 (116)
75 2div_A TRNA selenocysteine ass 99.6 9.9E-15 3.4E-19 119.8 9.6 79 254-332 7-93 (99)
76 2krb_A Eukaryotic translation 99.6 4.7E-15 1.6E-19 117.7 7.2 73 256-328 1-81 (81)
77 2dgp_A Bruno-like 4, RNA bindi 99.6 7.5E-15 2.6E-19 122.0 8.7 80 253-332 10-95 (106)
78 2do0_A HnRNP M, heterogeneous 99.6 2.3E-14 7.7E-19 120.7 11.7 81 253-333 12-94 (114)
79 2cpi_A CCR4-NOT transcription 99.6 6.4E-15 2.2E-19 124.2 8.2 79 254-332 13-100 (111)
80 2cpe_A RNA-binding protein EWS 99.6 1.1E-14 3.8E-19 122.5 9.5 81 252-332 11-102 (113)
81 4f02_A Polyadenylate-binding p 99.6 3.1E-15 1.1E-19 139.8 6.8 79 253-331 100-179 (213)
82 1x4e_A RNA binding motif, sing 99.6 3.6E-15 1.2E-19 119.0 6.2 78 254-331 3-83 (85)
83 2jwn_A Embryonic polyadenylate 99.6 1.5E-14 5.1E-19 123.7 10.5 82 251-332 31-114 (124)
84 2mss_A Protein (musashi1); RNA 99.6 4.1E-15 1.4E-19 115.9 6.1 73 258-330 1-75 (75)
85 2dng_A Eukaryotic translation 99.5 2.2E-14 7.6E-19 118.8 10.8 79 253-332 12-92 (103)
86 1u6f_A Tcubp1, RNA-binding pro 99.5 4.5E-14 1.6E-18 123.1 13.3 82 252-333 38-122 (139)
87 1oo0_B CG8781-PA, drosophila Y 99.5 1E-14 3.5E-19 122.1 8.7 80 253-332 23-105 (110)
88 2wbr_A GW182, gawky, LD47780P; 99.5 9.7E-15 3.3E-19 118.9 8.2 72 255-330 6-78 (89)
89 2dh8_A DAZ-associated protein 99.5 1.4E-14 4.9E-19 120.2 9.3 80 253-332 13-94 (105)
90 2cjk_A Nuclear polyadenylated 99.5 5.8E-15 2E-19 131.0 7.3 79 253-331 84-164 (167)
91 2kxn_B Transformer-2 protein h 99.5 9.7E-15 3.3E-19 126.9 8.5 80 253-332 43-125 (129)
92 2nlw_A Eukaryotic translation 99.5 9.7E-15 3.3E-19 121.9 7.8 79 253-331 12-98 (105)
93 1wi8_A EIF-4B, eukaryotic tran 99.5 2E-14 6.9E-19 119.3 9.7 78 254-332 13-93 (104)
94 3n9u_C Cleavage and polyadenyl 99.5 1.9E-14 6.6E-19 129.2 10.1 78 254-331 53-135 (156)
95 2dhg_A TRNA selenocysteine ass 99.5 1.6E-14 5.5E-19 119.6 8.8 80 253-332 6-89 (104)
96 1p1t_A Cleavage stimulation fa 99.5 6.9E-15 2.4E-19 121.7 6.5 78 254-331 6-86 (104)
97 1x4g_A Nucleolysin TIAR; struc 99.5 4E-14 1.4E-18 118.6 11.2 78 251-332 20-98 (109)
98 2cq1_A PTB-like protein L; RRM 99.5 3.1E-14 1.1E-18 118.9 10.3 75 254-332 13-90 (101)
99 2cqg_A TDP-43, TAR DNA-binding 99.5 5.4E-14 1.8E-18 116.3 11.7 79 253-332 12-92 (103)
100 2ytc_A PRE-mRNA-splicing facto 99.5 1.8E-14 6.3E-19 114.8 8.5 75 253-331 9-85 (85)
101 2rs2_A Musashi-1, RNA-binding 99.5 2.9E-14 1E-18 120.0 10.1 80 252-331 21-102 (109)
102 3md3_A Nuclear and cytoplasmic 99.5 1.8E-14 6.1E-19 127.1 9.1 78 254-331 85-165 (166)
103 2la4_A Nuclear and cytoplasmic 99.5 2.2E-14 7.4E-19 118.3 8.9 75 253-331 24-99 (101)
104 2dnq_A RNA-binding protein 4B; 99.5 4E-14 1.4E-18 114.4 10.3 73 254-332 6-79 (90)
105 1x4b_A Heterogeneous nuclear r 99.5 3.5E-14 1.2E-18 120.1 10.3 80 253-332 24-105 (116)
106 2cpy_A RNA-binding protein 12; 99.5 1.4E-14 4.6E-19 122.8 7.4 79 253-331 12-92 (114)
107 2lea_A Serine/arginine-rich sp 99.5 1.3E-14 4.4E-19 127.0 7.4 80 253-332 44-126 (135)
108 2ek1_A RNA-binding protein 12; 99.5 1.3E-14 4.4E-19 118.1 6.8 77 255-331 14-93 (95)
109 2db1_A Heterogeneous nuclear r 99.5 1.7E-14 5.8E-19 123.2 7.8 79 253-331 14-96 (118)
110 1why_A Hypothetical protein ri 99.5 5.8E-14 2E-18 115.0 10.4 75 254-332 15-92 (97)
111 1x4c_A Splicing factor, argini 99.5 1E-13 3.6E-18 116.0 12.2 73 255-332 14-92 (108)
112 2kt5_A RNA and export factor-b 99.5 7E-14 2.4E-18 119.8 11.3 81 253-333 32-114 (124)
113 2cqp_A RNA-binding protein 12; 99.5 2E-14 6.9E-19 117.7 7.5 78 254-331 13-93 (98)
114 2ad9_A Polypyrimidine tract-bi 99.5 3.4E-14 1.2E-18 122.3 9.2 75 254-332 29-106 (119)
115 2e5j_A Methenyltetrahydrofolat 99.5 3.1E-14 1.1E-18 116.8 8.6 76 253-331 16-92 (97)
116 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1E-14 3.4E-19 114.0 5.3 73 257-330 1-76 (77)
117 2dgw_A Probable RNA-binding pr 99.5 5.3E-14 1.8E-18 113.8 9.8 79 253-332 7-86 (91)
118 1h2v_Z 20 kDa nuclear CAP bind 99.5 6.3E-14 2.2E-18 124.8 11.1 80 253-332 36-118 (156)
119 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 5.2E-14 1.8E-18 122.2 10.3 78 253-330 60-140 (140)
120 3ex7_B RNA-binding protein 8A; 99.5 2.7E-14 9.2E-19 122.5 8.3 80 253-332 19-101 (126)
121 4fxv_A ELAV-like protein 1; RN 99.5 4.1E-14 1.4E-18 117.3 9.0 76 352-428 18-97 (99)
122 1x5o_A RNA binding motif, sing 99.5 7.1E-14 2.4E-18 117.7 10.5 80 252-331 21-110 (114)
123 2qfj_A FBP-interacting repress 99.5 6.9E-14 2.4E-18 129.2 11.3 82 252-333 121-205 (216)
124 2jvr_A Nucleolar protein 3; RN 99.5 2.6E-14 8.8E-19 121.5 7.6 76 254-331 26-103 (111)
125 2cpj_A Non-POU domain-containi 99.5 3.4E-14 1.2E-18 116.9 8.0 76 253-332 12-88 (99)
126 3r27_A HnRNP L, heterogeneous 99.5 4.9E-14 1.7E-18 117.7 8.9 76 253-332 18-96 (100)
127 1x4d_A Matrin 3; structural ge 99.5 3E-14 1E-18 119.4 7.6 75 254-332 13-91 (102)
128 1whx_A Hypothetical protein ri 99.5 3.3E-14 1.1E-18 120.1 8.0 76 254-333 8-84 (111)
129 2ki2_A SS-DNA binding protein 99.5 7.6E-15 2.6E-19 118.4 3.8 75 257-332 2-79 (90)
130 1wel_A RNA-binding protein 12; 99.5 1.4E-14 4.6E-19 124.5 5.5 79 253-331 22-102 (124)
131 1wez_A HnRNP H', FTP-3, hetero 99.5 2.1E-14 7.3E-19 119.7 6.6 78 254-332 13-91 (102)
132 2dgt_A RNA-binding protein 30; 99.5 1E-13 3.5E-18 112.4 10.4 74 253-332 7-81 (92)
133 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.5E-14 5.1E-19 119.6 5.4 78 253-331 16-96 (100)
134 1wex_A Hypothetical protein (r 99.5 4.8E-14 1.7E-18 118.3 8.6 75 254-332 13-90 (104)
135 2jvo_A Nucleolar protein 3; nu 99.5 5.9E-14 2E-18 118.1 9.1 75 252-332 27-102 (108)
136 2kn4_A Immunoglobulin G-bindin 99.5 5.6E-14 1.9E-18 125.0 9.5 79 254-332 68-149 (158)
137 1wg5_A Heterogeneous nuclear r 99.5 3.8E-14 1.3E-18 118.1 7.8 78 254-331 13-92 (104)
138 2hgl_A HNRPF protein, heteroge 99.5 2.2E-14 7.6E-19 126.2 6.7 79 253-331 41-123 (136)
139 2dis_A Unnamed protein product 99.5 5.8E-14 2E-18 117.2 8.8 79 255-333 7-92 (109)
140 2e5g_A U6 snRNA-specific termi 99.5 1.2E-13 4.2E-18 112.5 10.5 74 255-331 7-80 (94)
141 2dnp_A RNA-binding protein 14; 99.5 7E-14 2.4E-18 113.0 8.9 74 253-332 6-80 (90)
142 2m2b_A RNA-binding protein 10; 99.5 1.7E-14 5.7E-19 125.2 5.5 79 253-332 20-107 (131)
143 2xnq_A Nuclear polyadenylated 99.5 9.6E-14 3.3E-18 114.4 9.8 73 253-331 19-93 (97)
144 4f25_A Polyadenylate-binding p 99.5 5.7E-14 2E-18 119.2 8.6 75 353-428 5-81 (115)
145 1iqt_A AUF1, heterogeneous nuc 99.5 1E-14 3.4E-19 113.6 3.5 73 258-330 1-75 (75)
146 2dnn_A RNA-binding protein 12; 99.5 6.8E-14 2.3E-18 118.4 8.7 75 256-331 16-91 (109)
147 3nmr_A Cugbp ELAV-like family 99.5 3.1E-14 1.1E-18 126.8 6.6 77 254-330 93-174 (175)
148 1s79_A Lupus LA protein; RRM, 99.5 9.3E-14 3.2E-18 116.2 9.0 78 352-430 10-89 (103)
149 2cpd_A Apobec-1 stimulating pr 99.5 2.6E-13 8.7E-18 111.6 11.5 74 253-332 12-88 (99)
150 2fc9_A NCL protein; structure 99.5 1.1E-13 3.6E-18 114.1 9.2 77 253-332 12-90 (101)
151 2g4b_A Splicing factor U2AF 65 99.5 2.2E-14 7.6E-19 127.8 5.4 76 255-330 93-171 (172)
152 2dgu_A Heterogeneous nuclear r 99.5 1.8E-13 6.1E-18 113.4 10.2 74 254-333 9-83 (103)
153 1l3k_A Heterogeneous nuclear r 99.5 8.6E-14 2.9E-18 126.6 8.7 78 254-331 102-181 (196)
154 2lmi_A GRSF-1, G-rich sequence 99.5 2E-14 6.9E-19 120.4 4.1 79 253-331 8-90 (107)
155 1b7f_A Protein (SXL-lethal pro 99.5 2.6E-14 9.1E-19 126.6 4.6 77 254-330 87-168 (168)
156 2kvi_A Nuclear polyadenylated 99.5 8.8E-14 3E-18 114.0 7.4 74 253-332 7-82 (96)
157 1nu4_A U1A RNA binding domain; 99.5 5.4E-14 1.8E-18 114.8 6.1 78 253-331 5-87 (97)
158 1fjc_A Nucleolin RBD2, protein 99.5 7.3E-14 2.5E-18 113.9 6.9 76 253-331 13-89 (96)
159 2lxi_A RNA-binding protein 10; 99.5 4.8E-14 1.6E-18 114.9 5.5 76 353-429 1-82 (91)
160 2i2y_A Fusion protein consists 99.5 9.4E-14 3.2E-18 122.9 7.8 76 253-331 70-146 (150)
161 1wf1_A RNA-binding protein RAL 99.5 1.6E-13 5.6E-18 115.0 8.8 72 255-332 26-99 (110)
162 2a3j_A U1 small nuclear ribonu 99.5 1.2E-13 4.1E-18 120.1 8.1 76 255-331 28-108 (127)
163 2yh0_A Splicing factor U2AF 65 99.4 9.2E-14 3.1E-18 126.6 7.6 80 253-332 111-193 (198)
164 2cpx_A Hypothetical protein FL 99.4 2.2E-13 7.5E-18 114.8 9.2 77 254-332 23-104 (115)
165 1rk8_A CG8781-PA, CG8781-PA pr 99.4 2.4E-13 8.3E-18 122.4 10.0 79 254-332 70-151 (165)
166 1wg1_A KIAA1579 protein, homol 99.4 1.3E-13 4.3E-18 111.2 7.1 73 255-332 4-77 (88)
167 1fxl_A Paraneoplastic encephal 99.4 3.4E-14 1.2E-18 125.4 3.9 77 254-330 86-167 (167)
168 3s8s_A Histone-lysine N-methyl 99.4 2.6E-13 8.8E-18 114.7 9.2 70 352-422 5-76 (110)
169 1x5p_A Negative elongation fac 99.4 7.1E-13 2.4E-17 108.6 11.4 74 253-332 12-86 (97)
170 2hgm_A HNRPF protein, heteroge 99.4 8.2E-14 2.8E-18 121.1 6.1 78 253-331 39-119 (126)
171 2cqh_A IGF-II mRNA-binding pro 99.4 1.3E-13 4.3E-18 112.0 6.7 74 254-332 6-82 (93)
172 2hzc_A Splicing factor U2AF 65 99.4 2E-13 7E-18 109.0 7.7 71 255-329 5-86 (87)
173 3q2s_C Cleavage and polyadenyl 99.4 1.6E-13 5.5E-18 130.6 8.4 77 255-331 67-148 (229)
174 2lkz_A RNA-binding protein 5; 99.4 3.5E-14 1.2E-18 117.2 3.3 64 352-416 8-75 (95)
175 2xs2_A Deleted in azoospermia- 99.4 7.3E-14 2.5E-18 115.3 5.2 78 253-331 6-84 (102)
176 2lea_A Serine/arginine-rich sp 99.4 1.3E-13 4.6E-18 120.5 7.0 115 298-428 6-125 (135)
177 2e44_A Insulin-like growth fac 99.4 1.9E-13 6.6E-18 111.4 7.4 76 255-332 14-91 (96)
178 2dha_A FLJ20171 protein; RRM d 99.4 1.6E-13 5.5E-18 118.6 7.2 79 253-331 20-103 (123)
179 3s7r_A Heterogeneous nuclear r 99.4 2.8E-13 9.5E-18 108.4 8.0 67 351-418 9-77 (87)
180 2fc8_A NCL protein; structure 99.4 4.8E-13 1.6E-17 110.3 9.5 77 253-332 12-91 (102)
181 2lcw_A RNA-binding protein FUS 99.1 1.4E-14 4.7E-19 122.8 0.0 80 253-332 4-94 (116)
182 2krb_A Eukaryotic translation 99.4 3.7E-13 1.3E-17 106.7 8.1 67 354-421 2-74 (81)
183 1fj7_A Nucleolin RBD1, protein 99.4 4E-14 1.4E-18 116.7 2.5 77 254-331 15-93 (101)
184 2hgn_A Heterogeneous nuclear r 99.4 5.2E-14 1.8E-18 124.3 3.0 79 253-332 43-122 (139)
185 2f3j_A RNA and export factor b 99.4 5.4E-13 1.9E-17 122.1 9.8 79 254-332 86-166 (177)
186 1qm9_A Polypyrimidine tract-bi 99.4 1.8E-12 6E-17 118.7 13.2 76 254-332 118-196 (198)
187 1x4f_A Matrin 3; structural ge 99.4 2.2E-13 7.4E-18 116.0 6.5 76 253-332 22-101 (112)
188 3d2w_A TAR DNA-binding protein 99.4 7E-13 2.4E-17 107.6 9.2 73 253-331 8-82 (89)
189 3egn_A RNA-binding protein 40; 99.4 2.4E-13 8.2E-18 119.3 6.9 78 254-332 43-129 (143)
190 1rk8_A CG8781-PA, CG8781-PA pr 99.4 5.2E-13 1.8E-17 120.2 9.0 127 301-428 11-150 (165)
191 3beg_B Splicing factor, argini 99.4 2.9E-13 9.8E-18 114.9 6.7 72 255-331 15-92 (115)
192 2cqg_A TDP-43, TAR DNA-binding 99.4 4.3E-13 1.5E-17 110.9 7.5 78 351-429 13-92 (103)
193 2dnh_A Bruno-like 5, RNA bindi 99.4 9.3E-13 3.2E-17 109.1 9.5 78 351-429 13-96 (105)
194 3pgw_S U1-70K; protein-RNA com 99.4 1.1E-12 3.6E-17 136.4 11.8 79 254-332 100-181 (437)
195 3bs9_A Nucleolysin TIA-1 isofo 99.4 1.1E-12 3.7E-17 104.7 9.1 76 352-428 5-84 (87)
196 3md1_A Nuclear and cytoplasmic 99.4 1.1E-12 3.8E-17 103.7 9.0 74 354-428 2-79 (83)
197 2d9p_A Polyadenylate-binding p 99.4 8.5E-13 2.9E-17 109.1 8.7 79 350-429 12-92 (103)
198 2dgv_A HnRNP M, heterogeneous 99.4 1E-12 3.5E-17 106.1 8.9 77 352-429 7-85 (92)
199 2dnz_A Probable RNA-binding pr 99.4 1.3E-12 4.4E-17 106.1 9.5 77 352-429 4-84 (95)
200 1x4e_A RNA binding motif, sing 99.4 3.4E-13 1.2E-17 107.5 5.9 68 352-420 4-73 (85)
201 2cq2_A Hypothetical protein LO 99.4 5.1E-13 1.8E-17 114.1 7.3 74 254-331 23-104 (114)
202 2adc_A Polypyrimidine tract-bi 99.4 2E-12 6.8E-17 122.0 12.1 76 254-332 149-227 (229)
203 2cq3_A RNA-binding protein 9; 99.4 1.6E-12 5.3E-17 107.5 9.8 78 351-429 13-92 (103)
204 1whw_A Hypothetical protein ri 99.4 1.3E-12 4.3E-17 107.1 9.2 76 352-428 7-86 (99)
205 2ywk_A Putative RNA-binding pr 99.4 1.3E-12 4.4E-17 106.2 9.0 75 352-427 15-92 (95)
206 3mdf_A Peptidyl-prolyl CIS-tra 99.4 8.8E-13 3E-17 104.8 7.8 69 352-421 6-76 (85)
207 2cqc_A Arginine/serine-rich sp 99.4 1.4E-12 4.8E-17 105.8 9.1 76 351-427 13-92 (95)
208 2nlw_A Eukaryotic translation 99.4 6.1E-13 2.1E-17 110.9 7.2 78 352-430 14-100 (105)
209 2cqi_A Nucleolysin TIAR; RNA r 99.4 1.4E-12 4.6E-17 107.8 9.2 78 351-429 13-92 (103)
210 3zzy_A Polypyrimidine tract-bi 99.4 2.1E-12 7.1E-17 112.8 10.6 74 257-333 29-106 (130)
211 2cqd_A RNA-binding region cont 99.4 1.1E-12 3.9E-17 110.7 8.7 77 351-428 15-94 (116)
212 2mss_A Protein (musashi1); RNA 99.4 5E-13 1.7E-17 104.0 5.9 64 355-419 1-66 (75)
213 2e5i_A Heterogeneous nuclear r 99.4 2.4E-12 8.3E-17 111.5 10.7 71 258-332 27-101 (124)
214 3p5t_L Cleavage and polyadenyl 99.4 5.3E-13 1.8E-17 108.0 6.0 67 354-421 2-72 (90)
215 2dgp_A Bruno-like 4, RNA bindi 99.4 6.9E-13 2.4E-17 110.0 6.8 78 351-429 11-95 (106)
216 2dgs_A DAZ-associated protein 99.4 1.9E-12 6.5E-17 106.2 9.3 77 352-429 9-88 (99)
217 2do4_A Squamous cell carcinoma 99.4 1.8E-12 6.1E-17 106.5 9.2 77 351-428 15-94 (100)
218 2x1f_A MRNA 3'-END-processing 99.4 1.4E-12 4.8E-17 106.5 8.5 75 353-428 2-80 (96)
219 2cq0_A Eukaryotic translation 99.4 1.5E-12 5.3E-17 107.5 8.8 77 351-428 13-93 (103)
220 2dhg_A TRNA selenocysteine ass 99.4 2.1E-12 7.1E-17 106.8 9.3 76 352-428 8-88 (104)
221 3ucg_A Polyadenylate-binding p 99.4 2.1E-12 7.2E-17 103.4 9.0 75 352-428 5-83 (89)
222 1sjq_A Polypyrimidine tract-bi 99.4 8.3E-13 2.9E-17 111.2 6.9 72 352-428 15-90 (105)
223 2dgo_A Cytotoxic granule-assoc 99.4 2.6E-12 8.7E-17 108.3 10.0 77 351-428 13-93 (115)
224 1wf0_A TDP-43, TAR DNA-binding 99.4 8.2E-13 2.8E-17 106.2 6.6 73 255-331 4-76 (88)
225 2voo_A Lupus LA protein; RNA-b 99.4 2.9E-12 9.8E-17 118.8 11.2 120 305-430 63-187 (193)
226 2cph_A RNA binding motif prote 99.4 1.7E-12 5.9E-17 107.7 8.7 78 351-429 13-96 (107)
227 2voo_A Lupus LA protein; RNA-b 99.4 1.2E-12 4.1E-17 121.4 8.5 81 252-332 105-186 (193)
228 2div_A TRNA selenocysteine ass 99.4 1.7E-12 5.8E-17 106.3 8.5 68 352-420 8-78 (99)
229 3ns6_A Eukaryotic translation 99.4 7.2E-13 2.4E-17 109.6 6.3 77 352-429 5-92 (100)
230 1x5u_A Splicing factor 3B subu 99.4 1.8E-12 6E-17 107.4 8.7 79 351-430 13-95 (105)
231 1x4h_A RNA-binding protein 28; 99.4 1.8E-12 6.1E-17 108.3 8.7 64 351-415 13-78 (111)
232 3pgw_A U1-A; protein-RNA compl 99.4 7E-12 2.4E-16 121.1 14.2 76 253-331 204-281 (282)
233 1x5t_A Splicing factor 3B subu 99.4 1.2E-12 4.1E-17 106.5 7.4 77 352-429 4-85 (96)
234 1sjr_A Polypyrimidine tract-bi 99.3 1.4E-12 4.9E-17 118.1 8.5 75 257-333 47-124 (164)
235 1p27_B RNA-binding protein 8A; 99.3 2.9E-12 1E-16 106.2 9.7 77 351-428 21-101 (106)
236 1x5s_A Cold-inducible RNA-bind 99.3 1.7E-12 5.9E-17 106.9 8.1 77 352-429 11-91 (102)
237 2e5h_A Zinc finger CCHC-type a 99.3 1.9E-12 6.7E-17 104.8 8.2 69 352-421 15-85 (94)
238 2cpf_A RNA binding motif prote 99.3 1.8E-12 6.3E-17 105.9 8.0 76 352-428 4-86 (98)
239 1wg5_A Heterogeneous nuclear r 99.3 2.3E-12 7.9E-17 107.2 8.6 69 352-421 14-84 (104)
240 3ulh_A THO complex subunit 4; 99.3 2.8E-12 9.6E-17 106.5 9.1 70 351-421 27-97 (107)
241 2khc_A Testis-specific RNP-typ 99.3 3.9E-12 1.3E-16 107.6 10.0 71 350-421 37-109 (118)
242 2bz2_A Negative elongation fac 99.3 1.9E-12 6.4E-17 111.3 8.2 74 253-332 36-110 (121)
243 3pgw_S U1-70K; protein-RNA com 99.3 3.5E-13 1.2E-17 140.0 4.3 78 351-429 100-181 (437)
244 2rs2_A Musashi-1, RNA-binding 99.3 1.4E-12 4.7E-17 109.6 6.9 77 350-427 22-101 (109)
245 2err_A Ataxin-2-binding protei 99.3 1.3E-12 4.5E-17 109.7 6.8 70 350-420 26-95 (109)
246 1iqt_A AUF1, heterogeneous nuc 99.3 5.7E-13 1.9E-17 103.5 4.1 64 355-419 1-66 (75)
247 1uaw_A Mouse-musashi-1; RNP-ty 99.3 1E-12 3.4E-17 102.5 5.5 63 354-417 1-65 (77)
248 2jrs_A RNA-binding protein 39; 99.3 3.8E-12 1.3E-16 106.9 9.4 78 351-429 24-105 (108)
249 1x4b_A Heterogeneous nuclear r 99.3 3.7E-12 1.3E-16 107.6 9.4 77 350-428 24-104 (116)
250 2cpz_A CUG triplet repeat RNA- 99.3 2.8E-12 9.7E-17 108.1 8.7 77 351-428 23-103 (115)
251 2dnl_A Cytoplasmic polyadenyla 99.3 1.4E-12 4.7E-17 110.4 6.7 73 254-329 6-84 (114)
252 2dnm_A SRP46 splicing factor; 99.3 1.7E-12 5.7E-17 107.3 7.0 76 352-428 12-91 (103)
253 2la6_A RNA-binding protein FUS 99.3 3.4E-12 1.2E-16 104.8 8.8 66 352-418 12-87 (99)
254 1x5o_A RNA binding motif, sing 99.3 4.2E-12 1.4E-16 106.8 9.5 68 351-419 23-91 (114)
255 2do0_A HnRNP M, heterogeneous 99.3 3.4E-12 1.2E-16 107.2 8.7 76 352-428 14-92 (114)
256 2fy1_A RNA-binding motif prote 99.3 3.5E-12 1.2E-16 108.5 8.9 77 352-429 6-85 (116)
257 2dh8_A DAZ-associated protein 99.3 2E-12 7E-17 107.1 7.3 76 351-428 14-93 (105)
258 3d2w_A TAR DNA-binding protein 99.3 1.1E-12 3.9E-17 106.3 5.6 58 352-413 10-67 (89)
259 2diu_A KIAA0430 protein; struc 99.3 2.8E-12 9.7E-17 105.5 7.9 69 257-333 10-84 (96)
260 2cqb_A Peptidyl-prolyl CIS-tra 99.3 1.5E-12 5E-17 107.3 6.1 77 352-429 11-91 (102)
261 1oo0_B CG8781-PA, drosophila Y 99.3 4.1E-12 1.4E-16 106.2 8.9 77 351-428 24-104 (110)
262 2cpy_A RNA-binding protein 12; 99.3 1.8E-12 6.2E-17 109.6 6.8 69 351-420 13-83 (114)
263 4a8x_A RNA-binding protein wit 99.3 2.1E-12 7.2E-17 103.1 6.6 69 352-421 3-74 (88)
264 1wez_A HnRNP H', FTP-3, hetero 99.3 2.9E-12 1E-16 106.6 7.6 68 352-421 14-82 (102)
265 2dng_A Eukaryotic translation 99.3 5.6E-12 1.9E-16 104.2 9.2 77 351-429 13-92 (103)
266 3n9u_C Cleavage and polyadenyl 99.3 4.5E-12 1.5E-16 113.7 9.3 75 352-427 54-134 (156)
267 2cq4_A RNA binding motif prote 99.3 4.2E-12 1.4E-16 106.9 8.5 75 352-428 24-102 (114)
268 1u6f_A Tcubp1, RNA-binding pro 99.3 6.8E-12 2.3E-16 109.1 9.9 79 350-429 39-121 (139)
269 1p1t_A Cleavage stimulation fa 99.3 3.4E-12 1.2E-16 105.3 7.3 76 352-428 7-86 (104)
270 2dgx_A KIAA0430 protein; RRM d 99.3 5.4E-12 1.8E-16 103.3 8.3 78 352-431 8-91 (96)
271 2jwn_A Embryonic polyadenylate 99.3 5.6E-12 1.9E-16 107.6 8.7 78 350-428 33-113 (124)
272 1wi8_A EIF-4B, eukaryotic tran 99.3 5.4E-12 1.8E-16 104.5 8.2 75 352-428 14-92 (104)
273 2pe8_A Splicing factor 45; RRM 99.3 1.1E-11 3.8E-16 104.0 10.2 79 253-331 5-92 (105)
274 2ek1_A RNA-binding protein 12; 99.3 2.1E-12 7.1E-17 104.9 5.5 69 352-421 14-84 (95)
275 2j8a_A Histone-lysine N-methyl 99.3 4.6E-12 1.6E-16 110.1 7.9 75 257-331 3-94 (136)
276 2cq1_A PTB-like protein L; RRM 99.3 2.1E-12 7.2E-17 107.7 5.6 58 351-413 13-70 (101)
277 2ad9_A Polypyrimidine tract-bi 99.3 2.1E-12 7.3E-17 111.1 5.8 73 351-428 29-105 (119)
278 2kxn_B Transformer-2 protein h 99.3 5.5E-12 1.9E-16 109.5 8.3 78 350-428 43-124 (129)
279 2dgw_A Probable RNA-binding pr 99.3 7.7E-12 2.6E-16 100.9 8.6 67 352-421 9-76 (91)
280 2db1_A Heterogeneous nuclear r 99.3 4.2E-12 1.4E-16 108.3 7.3 67 352-419 16-86 (118)
281 1wex_A Hypothetical protein (r 99.3 3.5E-12 1.2E-16 106.9 6.6 73 352-429 14-90 (104)
282 2ki2_A SS-DNA binding protein 99.3 3.2E-12 1.1E-16 102.9 6.1 74 354-429 2-79 (90)
283 3ex7_B RNA-binding protein 8A; 99.3 6.5E-12 2.2E-16 107.5 8.2 77 351-428 20-100 (126)
284 2cpe_A RNA-binding protein EWS 99.3 4.9E-12 1.7E-16 106.2 7.3 78 351-429 13-102 (113)
285 2dis_A Unnamed protein product 99.3 9E-12 3.1E-16 103.8 8.8 78 352-430 7-92 (109)
286 2cqp_A RNA-binding protein 12; 99.3 3E-12 1E-16 104.6 5.7 76 352-428 14-93 (98)
287 2kt5_A RNA and export factor-b 99.3 8.3E-12 2.8E-16 106.7 8.7 78 350-428 32-112 (124)
288 1x4a_A Splicing factor, argini 99.3 9.3E-12 3.2E-16 103.9 8.8 77 351-429 20-98 (109)
289 2dha_A FLJ20171 protein; RRM d 99.3 3.5E-12 1.2E-16 110.2 6.3 69 351-420 21-94 (123)
290 1h2v_Z 20 kDa nuclear CAP bind 99.3 1.1E-11 3.6E-16 110.3 9.7 79 351-430 37-119 (156)
291 2xs2_A Deleted in azoospermia- 99.3 4.4E-12 1.5E-16 104.6 6.7 60 352-412 8-68 (102)
292 2dnn_A RNA-binding protein 12; 99.3 6.6E-12 2.3E-16 106.1 7.8 66 353-420 16-82 (109)
293 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 9.9E-12 3.4E-16 107.7 9.2 71 350-421 60-132 (140)
294 2cpi_A CCR4-NOT transcription 99.3 4.8E-12 1.7E-16 106.5 6.6 78 351-429 13-100 (111)
295 2hgn_A Heterogeneous nuclear r 99.3 1.9E-12 6.4E-17 114.3 4.2 111 296-421 1-113 (139)
296 1fje_B Nucleolin RBD12, protei 99.3 7E-12 2.4E-16 112.2 7.8 75 254-331 97-172 (175)
297 2hgl_A HNRPF protein, heteroge 99.3 6E-12 2E-16 110.6 7.1 67 352-420 43-113 (136)
298 2m2b_A RNA-binding protein 10; 99.3 4.3E-12 1.5E-16 109.9 6.1 66 350-417 20-89 (131)
299 1wf0_A TDP-43, TAR DNA-binding 99.3 1.5E-12 5.3E-17 104.6 3.0 58 352-413 4-61 (88)
300 2dit_A HIV TAT specific factor 99.3 2.8E-11 9.7E-16 102.0 10.9 77 253-331 12-100 (112)
301 2wbr_A GW182, gawky, LD47780P; 99.3 1E-11 3.4E-16 101.1 7.6 67 353-424 7-73 (89)
302 2lmi_A GRSF-1, G-rich sequence 99.3 5.3E-12 1.8E-16 105.5 6.1 67 352-419 10-80 (107)
303 3u1l_A PRE-mRNA-splicing facto 99.2 1.2E-11 4E-16 118.7 9.0 76 253-332 131-228 (240)
304 3sde_A Paraspeckle component 1 99.2 1.4E-11 4.9E-16 118.5 9.5 78 255-332 95-178 (261)
305 2hgm_A HNRPF protein, heteroge 99.2 1.2E-11 4.1E-16 107.3 8.0 68 352-421 41-111 (126)
306 3lqv_A PRE-mRNA branch site pr 99.2 1.6E-11 5.6E-16 103.3 8.7 75 352-428 7-83 (115)
307 2dnl_A Cytoplasmic polyadenyla 99.2 3.1E-12 1.1E-16 108.1 4.2 61 352-414 7-72 (114)
308 2j76_E EIF-4B, EIF4B, eukaryot 99.2 6.3E-12 2.1E-16 103.7 5.8 76 351-428 17-96 (100)
309 2dnq_A RNA-binding protein 4B; 99.2 2.2E-11 7.4E-16 98.2 8.7 71 352-429 7-79 (90)
310 1x4d_A Matrin 3; structural ge 99.2 4.4E-12 1.5E-16 106.1 4.2 73 352-429 14-91 (102)
311 3r27_A HnRNP L, heterogeneous 99.2 1.1E-11 3.8E-16 103.4 6.6 60 351-415 19-78 (100)
312 3tyt_A Heterogeneous nuclear r 99.2 1.2E-11 4.3E-16 115.4 7.7 76 254-329 121-203 (205)
313 1why_A Hypothetical protein ri 99.2 2E-11 6.9E-16 99.7 8.0 74 351-429 15-92 (97)
314 1fjc_A Nucleolin RBD2, protein 99.2 1.8E-11 6.1E-16 99.6 7.6 75 351-429 14-90 (96)
315 1x4c_A Splicing factor, argini 99.2 2.9E-11 9.9E-16 101.1 9.0 72 352-429 14-92 (108)
316 3q2s_C Cleavage and polyadenyl 99.2 1.7E-11 5.9E-16 116.5 8.6 76 352-428 67-148 (229)
317 1wel_A RNA-binding protein 12; 99.2 1.3E-11 4.3E-16 105.8 6.9 68 351-419 23-92 (124)
318 2hvz_A Splicing factor, argini 99.2 1.3E-11 4.3E-16 101.6 6.5 72 354-429 1-74 (101)
319 2fc9_A NCL protein; structure 99.2 1.8E-11 6.2E-16 100.6 7.3 74 351-428 13-89 (101)
320 2a3j_A U1 small nuclear ribonu 99.2 2.8E-11 9.7E-16 105.0 8.9 76 352-429 28-109 (127)
321 2cpj_A Non-POU domain-containi 99.2 2.4E-11 8E-16 99.7 7.5 74 351-429 13-88 (99)
322 1whx_A Hypothetical protein ri 99.2 2.6E-11 8.8E-16 102.2 7.8 72 352-428 9-82 (111)
323 1x4g_A Nucleolysin TIAR; struc 99.2 3.3E-11 1.1E-15 100.7 8.4 75 350-429 22-98 (109)
324 2la4_A Nuclear and cytoplasmic 99.2 3E-11 1E-15 99.3 7.6 72 352-428 26-99 (101)
325 1nu4_A U1A RNA binding domain; 99.2 1.4E-11 4.8E-16 100.3 5.2 76 352-429 7-88 (97)
326 2ytc_A PRE-mRNA-splicing facto 99.2 3.5E-11 1.2E-15 95.5 7.4 58 352-414 11-68 (85)
327 2jvr_A Nucleolar protein 3; RN 99.2 2.9E-11 9.8E-16 102.6 7.1 67 353-422 28-95 (111)
328 1wf1_A RNA-binding protein RAL 99.2 3.7E-11 1.3E-15 100.5 7.4 70 352-428 26-98 (110)
329 2cpx_A Hypothetical protein FL 99.2 7.1E-11 2.4E-15 99.2 9.1 76 351-429 23-104 (115)
330 2hzc_A Splicing factor U2AF 65 99.2 7.4E-11 2.5E-15 93.9 8.4 64 352-421 5-79 (87)
331 2jvo_A Nucleolar protein 3; nu 99.2 4.1E-11 1.4E-15 100.6 7.2 72 350-428 28-101 (108)
332 1fj7_A Nucleolin RBD1, protein 99.2 9E-12 3.1E-16 102.5 3.0 75 352-429 16-94 (101)
333 2kvi_A Nuclear polyadenylated 99.2 6E-11 2.1E-15 96.9 7.9 71 351-428 8-81 (96)
334 2xnq_A Nuclear polyadenylated 99.2 8.2E-11 2.8E-15 96.7 8.7 62 351-419 20-82 (97)
335 1x4f_A Matrin 3; structural ge 99.2 3.6E-11 1.2E-15 102.3 6.6 77 350-431 22-103 (112)
336 2f3j_A RNA and export factor b 99.2 5.7E-11 1.9E-15 108.6 8.4 76 352-428 87-165 (177)
337 3beg_B Splicing factor, argini 99.2 4.7E-11 1.6E-15 101.2 7.2 64 352-421 15-78 (115)
338 1jmt_A Splicing factor U2AF 35 99.2 2.9E-11 9.9E-16 101.2 5.7 70 261-330 20-103 (104)
339 2e5j_A Methenyltetrahydrofolat 99.1 5.5E-11 1.9E-15 97.2 7.1 74 351-428 17-92 (97)
340 2dgu_A Heterogeneous nuclear r 99.1 6E-11 2E-15 98.1 7.3 71 352-429 10-82 (103)
341 2dgt_A RNA-binding protein 30; 99.1 1E-10 3.5E-15 94.5 8.1 71 351-428 8-80 (92)
342 2cpd_A Apobec-1 stimulating pr 99.1 1.7E-10 5.8E-15 94.5 8.9 72 351-429 13-88 (99)
343 2dnp_A RNA-binding protein 14; 99.1 1E-10 3.5E-15 94.2 7.3 72 351-429 7-80 (90)
344 3egn_A RNA-binding protein 40; 99.1 4E-11 1.4E-15 105.0 5.2 76 352-428 44-128 (143)
345 3v4m_A Splicing factor U2AF 65 99.1 1.3E-10 4.4E-15 97.4 8.1 77 255-331 4-95 (105)
346 2fc8_A NCL protein; structure 99.1 1.1E-10 3.9E-15 95.8 7.6 76 350-429 12-91 (102)
347 2lcw_A RNA-binding protein FUS 98.7 6.8E-12 2.3E-16 106.0 0.0 77 352-429 6-94 (116)
348 1sjr_A Polypyrimidine tract-bi 99.1 1.2E-10 4.3E-15 105.3 7.9 74 353-429 46-123 (164)
349 2e5g_A U6 snRNA-specific termi 99.1 3.4E-10 1.2E-14 91.9 9.4 72 352-428 7-80 (94)
350 2cq2_A Hypothetical protein LO 99.1 9.9E-11 3.4E-15 99.9 6.4 62 352-418 24-87 (114)
351 1wg1_A KIAA1579 protein, homol 99.1 9.9E-11 3.4E-15 94.1 5.9 70 352-427 4-75 (88)
352 2cqh_A IGF-II mRNA-binding pro 99.1 7.6E-11 2.6E-15 95.4 4.6 72 352-429 7-82 (93)
353 3ue2_A Poly(U)-binding-splicin 99.0 5E-10 1.7E-14 96.0 8.7 77 255-331 19-107 (118)
354 1x5p_A Negative elongation fac 99.0 5.4E-10 1.9E-14 91.2 8.5 71 352-429 14-86 (97)
355 3zzy_A Polypyrimidine tract-bi 99.0 3.3E-10 1.1E-14 98.8 7.4 72 353-428 28-104 (130)
356 2e44_A Insulin-like growth fac 99.0 4.9E-10 1.7E-14 91.0 7.7 74 352-428 14-90 (96)
357 3tht_A Alkylated DNA repair pr 99.0 5.6E-10 1.9E-14 112.4 9.1 75 253-331 15-97 (345)
358 2j8a_A Histone-lysine N-methyl 99.0 4.7E-10 1.6E-14 97.5 6.3 58 354-412 3-74 (136)
359 2e5i_A Heterogeneous nuclear r 99.0 7.3E-10 2.5E-14 95.8 7.4 71 354-429 26-101 (124)
360 2pe8_A Splicing factor 45; RRM 99.0 2.2E-09 7.6E-14 89.9 9.2 70 351-421 6-83 (105)
361 2d9o_A DNAJ (HSP40) homolog, s 98.9 4.2E-09 1.4E-13 87.6 10.1 62 266-332 27-89 (100)
362 2d9o_A DNAJ (HSP40) homolog, s 98.9 2.8E-09 9.6E-14 88.7 8.5 63 363-429 27-89 (100)
363 2bz2_A Negative elongation fac 98.9 1.9E-09 6.4E-14 92.4 6.9 71 351-428 37-109 (121)
364 3s6e_A RNA-binding protein 39; 98.9 4.1E-09 1.4E-13 89.7 8.6 76 254-331 5-91 (114)
365 3u1l_A PRE-mRNA-splicing facto 98.8 3.6E-09 1.2E-13 101.4 6.7 63 352-419 133-204 (240)
366 2diu_A KIAA0430 protein; struc 98.8 7.7E-09 2.6E-13 85.0 7.2 71 354-433 10-87 (96)
367 3tht_A Alkylated DNA repair pr 98.8 7.7E-09 2.6E-13 104.1 7.7 64 350-418 15-80 (345)
368 2dit_A HIV TAT specific factor 98.8 1.5E-08 5E-13 85.2 8.0 77 350-429 12-101 (112)
369 3v4m_A Splicing factor U2AF 65 98.7 1.5E-08 5E-13 84.8 6.9 70 352-422 4-87 (105)
370 1jmt_A Splicing factor U2AF 35 98.7 5.8E-09 2E-13 87.1 4.0 63 358-421 20-95 (104)
371 3ue2_A Poly(U)-binding-splicin 98.7 4.2E-08 1.5E-12 83.9 8.0 70 351-421 18-98 (118)
372 2dnr_A Synaptojanin-1; RRM dom 98.7 4.8E-08 1.6E-12 79.6 7.7 70 256-331 7-84 (91)
373 1owx_A Lupus LA protein, SS-B, 98.6 7.7E-08 2.6E-12 82.7 7.6 73 254-330 16-93 (121)
374 1ufw_A Synaptojanin 2; RNP dom 98.5 1.6E-07 5.3E-12 77.0 5.5 71 255-331 14-93 (95)
375 1owx_A Lupus LA protein, SS-B, 98.4 7.4E-07 2.5E-11 76.6 7.8 58 352-414 17-76 (121)
376 3s6e_A RNA-binding protein 39; 98.4 6.5E-07 2.2E-11 76.0 7.1 67 352-421 6-82 (114)
377 3dxb_A Thioredoxin N-terminall 98.3 1.1E-06 3.7E-11 82.1 6.8 63 269-331 142-211 (222)
378 2l9w_A U4/U6 snRNA-associated- 97.8 7.3E-05 2.5E-09 62.7 8.1 73 253-329 18-96 (117)
379 2dhx_A Poly (ADP-ribose) polym 97.6 0.00022 7.7E-09 59.1 8.1 88 255-366 7-99 (104)
380 3dxb_A Thioredoxin N-terminall 97.5 0.00018 6.1E-09 66.9 6.9 54 365-419 141-200 (222)
381 2dnr_A Synaptojanin-1; RRM dom 97.3 0.00052 1.8E-08 55.7 6.9 58 353-418 7-72 (91)
382 1ufw_A Synaptojanin 2; RNP dom 96.9 0.00088 3E-08 54.8 4.6 61 352-420 14-83 (95)
383 1wey_A Calcipressin 1; structu 96.5 0.0072 2.5E-07 50.1 7.7 73 255-331 4-82 (104)
384 2l9w_A U4/U6 snRNA-associated- 96.4 0.0077 2.6E-07 50.5 7.1 63 353-420 21-88 (117)
385 1whv_A Poly(A)-specific ribonu 96.3 0.0096 3.3E-07 48.8 7.2 53 255-314 15-67 (100)
386 1uw4_A UPF3X; nonsense mediate 96.2 0.019 6.4E-07 46.6 8.4 66 257-322 2-72 (91)
387 1wwh_A Nucleoporin 35, nucleop 96.1 0.025 8.5E-07 48.0 9.0 72 254-330 22-94 (119)
388 2dhx_A Poly (ADP-ribose) polym 96.1 0.032 1.1E-06 46.2 9.2 60 352-417 7-71 (104)
389 1uw4_A UPF3X; nonsense mediate 95.7 0.037 1.3E-06 44.8 7.8 67 354-421 2-72 (91)
390 3ctr_A Poly(A)-specific ribonu 94.8 0.034 1.2E-06 45.7 5.1 52 258-316 8-60 (101)
391 1whv_A Poly(A)-specific ribonu 94.6 0.049 1.7E-06 44.6 5.5 52 354-413 17-68 (100)
392 3pq1_A Poly(A) RNA polymerase; 94.5 0.012 4.2E-07 61.0 2.1 69 249-321 46-114 (464)
393 1wwh_A Nucleoporin 35, nucleop 93.8 0.3 1E-05 41.4 8.9 63 352-420 23-85 (119)
394 3ctr_A Poly(A)-specific ribonu 93.8 0.064 2.2E-06 44.0 4.5 52 354-413 7-58 (101)
395 3pq1_A Poly(A) RNA polymerase; 93.8 0.024 8.3E-07 58.8 2.5 61 350-415 50-110 (464)
396 3p3d_A Nucleoporin 53; structu 93.5 0.089 3E-06 45.4 5.1 74 257-331 8-97 (132)
397 2l08_A Regulator of nonsense t 92.8 0.093 3.2E-06 42.9 4.0 67 256-322 9-80 (97)
398 1wey_A Calcipressin 1; structu 92.3 0.28 9.4E-06 40.6 6.3 64 352-420 4-72 (104)
399 2l08_A Regulator of nonsense t 90.5 0.3 1E-05 39.9 4.6 67 353-420 9-79 (97)
400 3d45_A Poly(A)-specific ribonu 68.8 7.3 0.00025 40.6 6.6 53 257-316 441-494 (507)
401 3p3d_A Nucleoporin 53; structu 64.4 6.5 0.00022 33.7 4.2 66 353-420 7-88 (132)
402 3d45_A Poly(A)-specific ribonu 59.9 17 0.00059 37.8 7.4 54 353-414 440-493 (507)
403 1xn9_A 30S ribosomal protein S 36.7 22 0.00076 28.9 2.9 47 363-410 28-80 (101)
404 2v94_A RPS24, 30S ribosomal pr 32.7 26 0.00089 28.8 2.7 47 363-410 37-89 (107)
405 1ywx_A 30S ribosomal protein S 32.0 23 0.0008 28.8 2.3 46 363-409 28-79 (102)
406 3j21_T 50S ribosomal protein L 29.2 1.3E+02 0.0043 23.6 6.1 55 355-410 24-79 (86)
407 3u5c_Y RP50, 40S ribosomal pro 28.8 42 0.0014 28.7 3.5 47 363-410 33-85 (135)
408 4e8u_A Putative uncharacterize 27.6 75 0.0026 28.3 5.0 58 257-315 13-82 (172)
409 2g1d_A 30S ribosomal protein S 27.0 24 0.00082 28.5 1.5 47 363-410 29-81 (98)
410 2xzm_P RPS24E; ribosome, trans 25.5 1.1E+02 0.0036 26.7 5.4 47 363-410 31-83 (149)
411 4e8u_A Putative uncharacterize 24.1 94 0.0032 27.6 5.0 50 354-405 13-73 (172)
412 1vq8_S 50S ribosomal protein L 20.9 1.6E+02 0.0056 22.9 5.3 56 355-411 23-79 (85)
413 2g0c_A ATP-dependent RNA helic 20.9 1.5E+02 0.0052 21.7 5.0 57 267-330 12-74 (76)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1.4e-28 Score=230.85 Aligned_cols=162 Identities=22% Similarity=0.357 Sum_probs=138.5
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...+||||+|||+++|+++|+++|++||.|.+|+++.|+.+ ++|||||+|.+.++|.+|++ +++..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35689999999999999999999999999999999998765 58999999999999999999 9999999999999886
Q ss_pred CCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHH
Q 013726 331 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 331 ~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~ka 410 (437)
... ........++|||+|||+++|+++|+++|++| |.|..|+|++|.+.++|||||+|.+.++|.+|
T Consensus 93 ~~~------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~A 159 (213)
T 4f02_A 93 QRD------------PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEAAERA 159 (213)
T ss_dssp CCC------------THHHHHCTTEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETTEEEEEEEEEESSHHHHHHH
T ss_pred ccc------------ccccccccccceECCcccccHHHHHHHHHhhc-CCeEEEEeeccCCCCceEEEEEeCCHHHHHHH
Confidence 421 11223345799999999999999999999995 99999999999888999999999999999999
Q ss_pred HhhcCceeccCc--hhhhhh
Q 013726 411 FIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 411 l~~~~~~~~~~~--~i~~~~ 428 (437)
+...+...++.. .|.||.
T Consensus 160 i~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 160 IEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp HHHHTTCEETTEECEEEECC
T ss_pred HHHhCCCEECCEEEEEEEcC
Confidence 987665444433 355554
No 2
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=2.3e-28 Score=223.67 Aligned_cols=168 Identities=18% Similarity=0.282 Sum_probs=137.9
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEec
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 329 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~ 329 (437)
.+...++|||+|||+++|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|+++++..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 3456789999999999999999999999999999999998765 58999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHH
Q 013726 330 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIAS 407 (437)
Q Consensus 330 s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A 407 (437)
+........ .......++|||+|||.++|+++|+++|++| |.|..|+++++ ++.++|||||+|.+.++|
T Consensus 89 ~~~~~~~~~--------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 89 AVSREDSQR--------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY-GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp CCC-------------------CCSEEEEECCTTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred ccCcccccc--------cccCCCcceEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 753221111 1112345899999999999999999999995 99999999988 577999999999999999
Q ss_pred HHHHhhcCceeccCc-hhhhhh
Q 013726 408 STLFIHTEFYILHNP-SIAWLE 428 (437)
Q Consensus 408 ~kal~~~~~~~~~~~-~i~~~~ 428 (437)
.+|+...+..+.+.+ .|.||.
T Consensus 160 ~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 160 DKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp HHHHHCSCCEETTEECEEEECC
T ss_pred HHHHHhCCcEECCEEEEEEecC
Confidence 999977544444332 355543
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=6.4e-28 Score=214.30 Aligned_cols=151 Identities=21% Similarity=0.378 Sum_probs=133.0
Q ss_pred CcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
.++|||+|||+++|+++|+++|+.||.|.+++++.++.+ ++|||||+|.+.++|.+|++ |+|..+.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 589999999999999999999999999999999988744 48999999999999999999 999999999999998752
Q ss_pred CCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHH
Q 013726 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 333 ~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~ka 410 (437)
.. .....++|||+|||..+|+++|+++|++| |.|..++++.+ +|.++|||||+|.+.++|.+|
T Consensus 82 ~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A 146 (167)
T 1fxl_A 82 SS--------------ASIRDANLYVSGLPKTMTQKELEQLFSQY-GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 146 (167)
T ss_dssp CC--------------GGGTTCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred Cc--------------ccCCCCcEEECCCCCcCCHHHHHHHHHhc-CCEeEEEEEecCCCCCccceEEEEeCCHHHHHHH
Confidence 11 12245799999999999999999999995 99999999987 567899999999999999999
Q ss_pred HhhcCceeccC
Q 013726 411 FIHTEFYILHN 421 (437)
Q Consensus 411 l~~~~~~~~~~ 421 (437)
+...+...+..
T Consensus 147 ~~~l~g~~~~g 157 (167)
T 1fxl_A 147 IKGLNGQKPSG 157 (167)
T ss_dssp HHHHTTCCCTT
T ss_pred HHHhcCCccCC
Confidence 88666544443
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.5e-28 Score=213.30 Aligned_cols=159 Identities=19% Similarity=0.287 Sum_probs=135.3
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCCC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAI 334 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~~ 334 (437)
|+|||+|||+++|+++|+++|++||.|.+|++..++.+ ++|||||+|.+.++|.+|++ |+|..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999999988754 68999999999999999997 99999999999999875322
Q ss_pred CCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHh
Q 013726 335 APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFI 412 (437)
Q Consensus 335 ~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~ 412 (437)
.. .....++|||+|||.++|+++|+++|++| |.|.++.++++ .+.++|||||+|.+.++|.+|+.
T Consensus 81 ~~------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 81 QS------------SSDDTFNLFVGDLNVNVDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp CC------------CCTTCEEEEEESCCTTCCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred CC------------CCCCCceEEECCCCCCCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 11 12345799999999999999999999995 99999999987 57799999999999999999988
Q ss_pred hcCceeccCc--hhhhhh
Q 013726 413 HTEFYILHNP--SIAWLE 428 (437)
Q Consensus 413 ~~~~~~~~~~--~i~~~~ 428 (437)
..+...+... .+.||+
T Consensus 148 ~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHTTCEETTEECEEEESC
T ss_pred HhCCCccCCcEEEEEecC
Confidence 5554333332 355553
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=9e-28 Score=214.21 Aligned_cols=150 Identities=22% Similarity=0.363 Sum_probs=132.9
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
..++|||+|||+++|+++|+++|+.||.|.+|++..++.+ ++|||||+|.+.++|.+|++ |+|..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3589999999999999999999999999999999988754 58999999999999999998 99999999999999875
Q ss_pred CCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHH
Q 013726 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASST 409 (437)
Q Consensus 332 ~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~k 409 (437)
.... ....++|||+|||..+|+++|+++|++| |.|..++++++ .+.++|||||+|.+.++|.+
T Consensus 82 ~~~~--------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 82 PGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGKY-GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp CCSS--------------TTTTCEEEEESCCTTCCHHHHHHHHTSS-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCcc--------------cCCCCCEEEeCCCCCCCHHHHHHhhhcC-CcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 3211 1234799999999999999999999995 99999999987 57799999999999999999
Q ss_pred HHhhcCceec
Q 013726 410 LFIHTEFYIL 419 (437)
Q Consensus 410 al~~~~~~~~ 419 (437)
|+...+...+
T Consensus 147 A~~~l~g~~~ 156 (168)
T 1b7f_A 147 AISALNNVIP 156 (168)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHhcCCEe
Confidence 9886665443
No 6
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=7.1e-28 Score=215.95 Aligned_cols=149 Identities=22% Similarity=0.321 Sum_probs=129.8
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC----CceEEEEEEcCHHHHHHHHH-hcCeEee---eeeeE
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS----VLRFAFIEFTDEEGARAALN-LAGTMLG---FYPVR 326 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~----s~GfaFVeF~~~e~A~~Al~-lng~~l~---Gr~L~ 326 (437)
+.++|||+|||+++|+++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5689999999999999999999999999999999988765 58999999999999999999 9998775 67788
Q ss_pred EeccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHH
Q 013726 327 VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVI 405 (437)
Q Consensus 327 V~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e 405 (437)
+.++..... .....++|||+|||.++|+++|+++|++| |.|.+++++++ .|.++|||||+|.+.+
T Consensus 82 ~~~~~~~~~-------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 82 MKPADSEKN-------------NAVEDRKLFIGMISKKCTENDIRVMFSSF-GQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp EEECGGGCC-------------SCGGGSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred Ecccccccc-------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhC-CCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 877642111 12245799999999999999999999995 99999999988 6779999999999999
Q ss_pred HHHHHHhhcCce
Q 013726 406 ASSTLFIHTEFY 417 (437)
Q Consensus 406 ~A~kal~~~~~~ 417 (437)
+|.+|+...+..
T Consensus 148 ~A~~A~~~l~g~ 159 (175)
T 3nmr_A 148 MAQTAIKAMHQA 159 (175)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHhcCC
Confidence 999998776653
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=6.9e-28 Score=223.84 Aligned_cols=174 Identities=20% Similarity=0.276 Sum_probs=138.4
Q ss_pred hhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEE
Q 013726 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (437)
Q Consensus 251 ~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V 327 (437)
......++|||+|||+++|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |++..+.|+.|.|
T Consensus 23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 34456789999999999999999999999999999999988744 68999999999999999999 9999999999999
Q ss_pred eccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHH
Q 013726 328 LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVI 405 (437)
Q Consensus 328 ~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e 405 (437)
.++........ ............++|||+|||.++|+++|+++|++| |.|..|+++++ ++.++|||||+|.+.+
T Consensus 103 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 103 GRPSNIGQAQP---IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF-GKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp ECCSCCGGGHH---HHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTS-SCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred ecCCCccccch---hhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 87642110000 000001123456899999999999999999999995 99999999987 6779999999999999
Q ss_pred HHHHHHhhcCceeccCch--hhhhh
Q 013726 406 ASSTLFIHTEFYILHNPS--IAWLE 428 (437)
Q Consensus 406 ~A~kal~~~~~~~~~~~~--i~~~~ 428 (437)
+|.+|+...+...++... |.|+.
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred HHHHHHHHccCCEeCCcEEEEEEec
Confidence 999998865554444332 44543
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=6.7e-28 Score=215.15 Aligned_cols=158 Identities=18% Similarity=0.260 Sum_probs=132.9
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~~ 332 (437)
+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|+. ++..+.|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 4589999999999999999999999999999999988654 68999999999999999999 45789999999887641
Q ss_pred CCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHH
Q 013726 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 333 ~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~ka 410 (437)
.......++|||+|||.++|+++|+++|++| |.|.+++++.+ +|.++|||||+|.+.++|.+|
T Consensus 81 --------------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 145 (167)
T 2cjk_A 81 --------------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQW-GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 145 (167)
T ss_dssp --------------HHHHHHCEEEEEEEECTTCCHHHHHHHHHTT-SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHH
T ss_pred --------------hhhccCCCeEEECCCCCCCCHHHHHHHHHhC-ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 1122345799999999999999999999995 99999999987 578999999999999999999
Q ss_pred HhhcCceeccCc-hhhhhh
Q 013726 411 FIHTEFYILHNP-SIAWLE 428 (437)
Q Consensus 411 l~~~~~~~~~~~-~i~~~~ 428 (437)
+......+.+.+ .|.||.
T Consensus 146 ~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 146 CQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHCSEECSSSSCEEEEECC
T ss_pred HhCCCEEeCCeEEEEeecC
Confidence 984333333332 355554
No 9
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=5.5e-27 Score=220.10 Aligned_cols=164 Identities=14% Similarity=0.158 Sum_probs=135.1
Q ss_pred CCcEEEEecCC-ccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 255 IRRTVYVSDID-QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 255 ~~rtLfVgNLp-~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
..++|||+||| ..+|+++|+++|++||.|.+|+++.++ +|||||+|.+.++|.+|++ |||..+.|++|.|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 46899999999 799999999999999999999998764 5999999999999999999 999999999999999864
Q ss_pred CCCCCCCC------------CC----CCChh--h-----hcccccEEEEEcCCccCCHHHHHHHhhhcCCce--EEEEEe
Q 013726 333 AIAPVNPT------------FL----PRTED--E-----REMCARTIYCTNIDKKVTQADVKLFFESVCGEV--YRLRLL 387 (437)
Q Consensus 333 ~~~~~~~~------------~~----pr~~~--~-----~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I--~~v~i~ 387 (437)
........ +. .+-.. . ...+.++|||+|||+++|+++|+++|++| |.| .++++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~-G~v~~~~v~~~ 158 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL-GVKRPTSVKVF 158 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHH-TCCCCSEEEEC
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEEE
Confidence 32111000 00 00000 0 01345789999999999999999999996 999 899999
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc
Q 013726 388 GDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP 422 (437)
Q Consensus 388 kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~ 422 (437)
.+.+.++|||||+|.+.++|.+|+...+.+.+..+
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 88777789999999999999999998888766554
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=8.5e-26 Score=202.41 Aligned_cols=147 Identities=22% Similarity=0.313 Sum_probs=127.7
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcC----C-------CeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeee
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGC----G-------QVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFY 323 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~----G-------~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr 323 (437)
+.++|||+|||+++|+++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+.++|..+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~----~g~afV~f~~~~~A~~A~~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT----TTEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC----CCEEEEEeCCHHHHHHHHHhCCcEecCc
Confidence 45899999999999999999999999 7 7888877544 5899999999999999999999999999
Q ss_pred eeEEeccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEe
Q 013726 324 PVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEF 401 (437)
Q Consensus 324 ~L~V~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF 401 (437)
+|.|.++..... ....++|||+|||.++|+++|+++|++| |.|..++++++ ++.++|||||+|
T Consensus 79 ~i~v~~~~~~~~--------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f 143 (172)
T 2g4b_A 79 SLKIRRPHDYQP--------------LPGAHKLFIGGLPNYLNDDQVKELLTSF-GPLKAFNLVKDSATGLSKGYAFCEY 143 (172)
T ss_dssp ECEEECCSSCCC--------------CTTTTCEEEECCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred eeeecCCcccCC--------------CCCCCEEEEEcCCCcCCHHHHHHHHHhc-CCceEEEEEecCCCCCcceEEEEEe
Confidence 999998653211 1125899999999999999999999995 99999999988 677999999999
Q ss_pred CCHHHHHHHHhhcCceecc
Q 013726 402 VMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 402 ~s~e~A~kal~~~~~~~~~ 420 (437)
.+.++|.+|+...+...++
T Consensus 144 ~~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 144 VDINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp SSTTHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHHcCCCEEC
Confidence 9999999999865554433
No 11
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=6.2e-26 Score=221.40 Aligned_cols=164 Identities=18% Similarity=0.249 Sum_probs=131.5
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCC-CeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G-~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
..++|||+|||+.+|+++|+++|+.|| .|..|+++.++.+ ++|||||+|.+.++|.+|+. |+|..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999887743 68999999999999999999 99999999999999876
Q ss_pred CCCCCCCCCCCCCChhhhcccccEEEEEcCCcc-CCHHHHHHHhhhcCCceEEEEEecc-C--CCcceEEEEEeCCHHHH
Q 013726 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGD-Y--HHSTRIAFVEFVMVIAS 407 (437)
Q Consensus 332 ~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~-vteedLrelF~~f~G~I~~v~i~kd-~--g~srGfAFVeF~s~e~A 407 (437)
........ .......++|||+|||.+ +|+++|+++|++| |.|.+|+++++ . +.++|||||+|.+.++|
T Consensus 196 ~~~~~~~~-------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A 267 (292)
T 2ghp_A 196 PLEKSKRT-------DSATLEGREIMIRNLSTELLDENLLRESFEGF-GSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 267 (292)
T ss_dssp CC----------------CCTTTEEEEEEECTTTCCHHHHHHHHGGG-SCEEEEECCSCCC---CCCEEEEEEESSHHHH
T ss_pred CCcccccc-------cccCCCCceEEEECCCcccCCHHHHHHHHhcc-CCeeEEEEEecCCcCCCCceEEEEEeCCHHHH
Confidence 32211110 112345689999999999 9999999999995 99999999998 3 78999999999999999
Q ss_pred HHHHhhcCceeccCc--hhhhh
Q 013726 408 STLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 408 ~kal~~~~~~~~~~~--~i~~~ 427 (437)
.+|+ ..+...++.. .+.||
T Consensus 268 ~~A~-~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 268 ERAL-QMNRSLLGNREISVSLA 288 (292)
T ss_dssp HHHG-GGTTEEETTEEEEEEEC
T ss_pred HHHH-HhcCCEECCcEEEEEEe
Confidence 9999 5555444333 24454
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=3.1e-25 Score=203.19 Aligned_cols=169 Identities=19% Similarity=0.256 Sum_probs=133.1
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcC----C-------CeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeee
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGC----G-------QVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFY 323 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~----G-------~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr 323 (437)
..++|||+|||+++|+++|+++|+.| | .|.++++.. ++|||||+|.+.++|.+|+.|+|..+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~----~~g~afV~F~~~~~A~~Al~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET----TTTEEEEEESCSHHHHHHGGGTTEEETTE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC----CCCEEEEEeCCHHHHHHHHHhcCCEEcCc
Confidence 46899999999999999999999999 5 677777643 36899999999999999999999999999
Q ss_pred eeEEeccCCCCCCCCCCCC-----CC-ChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcce
Q 013726 324 PVRVLPSKTAIAPVNPTFL-----PR-TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTR 395 (437)
Q Consensus 324 ~L~V~~s~~~~~~~~~~~~-----pr-~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srG 395 (437)
.|.|.++............ +. .........++|||+|||..+|+++|+++|++| |.|..++++++ .+.++|
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF-GPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB-SCEEEEEEEECTTTCSEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc-CCccEEEEeecCCCCCcce
Confidence 9999987643221111000 00 001112456899999999999999999999995 99999999988 677999
Q ss_pred EEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 396 IAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 396 fAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
||||+|.+.++|.+|+...+...++.. .+.|+.
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 999999999999999886555444333 345543
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=5.2e-26 Score=204.95 Aligned_cols=160 Identities=16% Similarity=0.213 Sum_probs=128.9
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeC-CCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD-PNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d-~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
+...++|||+|||+++|+++|+++|..||.+..+.+... ...++|||||+|.+.++|.+|++|+|..+.|++|.|.++.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 456799999999999999999999999987655222111 1236899999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 013726 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLF 411 (437)
Q Consensus 332 ~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal 411 (437)
.... ......++|||+|||.++|+++|+++|++| |.|..+ ...+.++|||||+|.+.++|.+|+
T Consensus 90 ~~~~------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~-g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 90 GRDS------------KKVRAARTLLAKNLSFNITEDELKEVFEDA-LEIRLV---SQDGKSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp CSSC------------STTGGGGEEEEESCCSSCCHHHHHHHCTTC-SEEEEE---CSSSSCCSEEEEECSSHHHHHHHH
T ss_pred Cccc------------cccccCCEEEEeCCCCCCCHHHHHHHHHhc-CeEEEe---cCCCCCceEEEEEECCHHHHHHHH
Confidence 3211 112345899999999999999999999995 998877 557889999999999999999999
Q ss_pred hhcCceeccCc--hhhhhh
Q 013726 412 IHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 412 ~~~~~~~~~~~--~i~~~~ 428 (437)
...+...+... .+.||.
T Consensus 154 ~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 154 EEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp HHHTEEEETTEEEEEEECS
T ss_pred HHhCCCEECCeEEEEEecC
Confidence 87665444333 355554
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=2.3e-25 Score=217.42 Aligned_cols=147 Identities=19% Similarity=0.295 Sum_probs=125.7
Q ss_pred hhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 251 ~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
..+...++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++|||||+|.+.++|.+|++++|..++|+.|.|.++
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 34567899999999999999999999999999999999998887899999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCC-ceEEEEEecc-CCCcceEEEEEeCCHHHHH
Q 013726 331 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGD-YHHSTRIAFVEFVMVIASS 408 (437)
Q Consensus 331 ~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G-~I~~v~i~kd-~g~srGfAFVeF~s~e~A~ 408 (437)
. .++|||+|||.++|+++|+++|++| | .|..|+++++ .+.++|||||+|.+.++|.
T Consensus 116 ~---------------------~~~l~v~nlp~~~t~~~l~~~f~~~-G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~ 173 (292)
T 2ghp_A 116 T---------------------ECTLWMTNFPPSYTQRNIRDLLQDI-NVVALSIRLPSLRFNTSRRFAYIDVTSKEDAR 173 (292)
T ss_dssp C---------------------SCEEEEECCCTTCCHHHHHHHHHHT-TCCCCEEECC-------CCEEEEECSSHHHHH
T ss_pred C---------------------CCEEEEECCCCCCCHHHHHHHHHHh-CCCeEEEEEEeCCCCCcceEEEEEECCHHHHH
Confidence 2 3799999999999999999999995 9 9999999987 5679999999999999999
Q ss_pred HHHhhcCceec
Q 013726 409 TLFIHTEFYIL 419 (437)
Q Consensus 409 kal~~~~~~~~ 419 (437)
+|+...+...+
T Consensus 174 ~A~~~l~g~~~ 184 (292)
T 2ghp_A 174 YCVEKLNGLKI 184 (292)
T ss_dssp HHHHHHTTCEE
T ss_pred HHHHHhCCCEe
Confidence 99885544333
No 15
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=4.1e-25 Score=213.66 Aligned_cols=137 Identities=23% Similarity=0.310 Sum_probs=125.9
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
....++|||+|||+++|+++|+++|+.||.|..|++..+ +|||||+|.+.++|.+|+. |+|..+.|+.|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 345689999999999999999999999999999999654 5899999999999999999 99999999999999874
Q ss_pred CCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHH
Q 013726 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 332 ~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~ka 410 (437)
..++|||+|||..+|+++|+++|++| |.|.+|+++.+ +|.++|||||+|.+.++|.+|
T Consensus 95 --------------------~~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A 153 (261)
T 3sde_A 95 --------------------HGAALTVKNLSPVVSNELLEQAFSQF-GPVEKAVVVVDDRGRATGKGFVEFAAKPPARKA 153 (261)
T ss_dssp --------------------CSSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETTSCEEEEEEEEESSHHHHHHH
T ss_pred --------------------cCCcccccCCCCCCCHHHHHHHHHhc-CCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHH
Confidence 13699999999999999999999995 99999999988 777999999999999999888
Q ss_pred Hhhc
Q 013726 411 FIHT 414 (437)
Q Consensus 411 l~~~ 414 (437)
+...
T Consensus 154 ~~~l 157 (261)
T 3sde_A 154 LERC 157 (261)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8775
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.93 E-value=7.5e-25 Score=212.69 Aligned_cols=171 Identities=20% Similarity=0.322 Sum_probs=134.7
Q ss_pred ccCCcEEEEecCCccchHHHHH----HHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEE
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~----~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V 327 (437)
....++|||+|||+++|+++|+ ++|+.||.|.+|++..+ ..++|||||+|.+.++|.+|++ |+|..+.|+.|.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC-CCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 4467899999999999999976 89999999999998763 3468999999999999999998 9999999999999
Q ss_pred eccCCCCCCC---CCCCCCC------------------------------------------------------------
Q 013726 328 LPSKTAIAPV---NPTFLPR------------------------------------------------------------ 344 (437)
Q Consensus 328 ~~s~~~~~~~---~~~~~pr------------------------------------------------------------ 344 (437)
.+++...... ...+..+
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9875432100 0000000
Q ss_pred ----------------------------------ChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccC
Q 013726 345 ----------------------------------TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY 390 (437)
Q Consensus 345 ----------------------------------~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~ 390 (437)
.........++|||+|||.++|+++|+++|++| |.|.+|++..+.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~-G~i~~v~~~~~~ 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQF-PGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhc-CCeEEEEEecCC
Confidence 000112245789999999999999999999995 999999998654
Q ss_pred CCcceEEEEEeCCHHHHHHHHhhcCceecc-C--chhhhhh
Q 013726 391 HHSTRIAFVEFVMVIASSTLFIHTEFYILH-N--PSIAWLE 428 (437)
Q Consensus 391 g~srGfAFVeF~s~e~A~kal~~~~~~~~~-~--~~i~~~~ 428 (437)
+|||||+|.+.++|.+|+...+.+.+. . ..|.||+
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 579999999999999999877765544 2 2466664
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=1.3e-24 Score=211.29 Aligned_cols=162 Identities=13% Similarity=0.142 Sum_probs=137.8
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
..++|||+|||+++|+++|+++|+.||.|..++++.++.+ ++|||||+|.+.++|.+|+. |+|..++|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4579999999999999999999999999999999988754 58999999999999999997 99999999999999986
Q ss_pred CCCCCCCCCCCCCChhhhcccccEEEEEcCCccC-CHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHH
Q 013726 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV-TQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASST 409 (437)
Q Consensus 332 ~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~v-teedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~k 409 (437)
...... .....++|||+|||.++ |+++|+++|++| |.|.+++++++ .|.++|||||+|.+.++|.+
T Consensus 174 ~~~~~~-----------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 174 AGQLTP-----------ALLHSRCLCVDRLPPGFNDVDALCRALSAV-HSPTFCQLACGQDGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp GGGCCT-----------TTTSCSEEEEECCCTTCCCHHHHHHHTCSS-SCCSEEEEEECSSCCEEEEEEEECSSHHHHHH
T ss_pred CCCCCc-----------ccCCccEEEEecCCcccCCHHHHHHHhhCC-CCeEEEEEEECCCCCcccEEEEEeCCHHHHHH
Confidence 432111 12345899999999995 999999999995 99999999988 77899999999999999999
Q ss_pred HHhhcCceeccCc--hhhhhh
Q 013726 410 LFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 410 al~~~~~~~~~~~--~i~~~~ 428 (437)
|+...++..++.. .+.|+.
T Consensus 242 A~~~l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 242 AQQQADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp HHHHHTTCEETTEECEEEECC
T ss_pred HHHHhCCCccCCeEEEEEEec
Confidence 9886665544433 355553
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.92 E-value=1.7e-24 Score=205.23 Aligned_cols=161 Identities=23% Similarity=0.287 Sum_probs=130.0
Q ss_pred ccCCcEEEEecCCc-cchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~-~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
....++|||+|||+ ++|+++|+++|+.||.|.+|++..++ +|||||+|.+.++|.+|++ |+|..+.|+.|.|.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 44678999999999 99999999999999999999999876 5899999999999999998 9999999999999987
Q ss_pred CCCCCCCCCC------------------CC-CCCh--hhhcccccEEEEEcCCccCCHHHHHHHhhhcCC-ceEEEEEec
Q 013726 331 KTAIAPVNPT------------------FL-PRTE--DEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLG 388 (437)
Q Consensus 331 ~~~~~~~~~~------------------~~-pr~~--~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G-~I~~v~i~k 388 (437)
.......... +. +... .......++|||+|||..+|+++|+++|++| | .|..+++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~~i~~v~i~~ 186 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQ 186 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTT-SCCEEEEEECS
T ss_pred cCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHc-CCCeeEEEEEE
Confidence 6432111000 00 0000 0112346899999999999999999999995 9 999999965
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 389 DYHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 389 d~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
+ .+|||||+|.+.++|.+|+...+...+.
T Consensus 187 ~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 187 K---DRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp S---STTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred C---CCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 3 3679999999999999998865554443
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=2.7e-24 Score=209.02 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=130.2
Q ss_pred hhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 251 ~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
......++|||+|||+++|+++|+++|+.|| |.+|.+ ..++|||||+|.+.++|.+|+. |+|..+.|+.|.|.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 17 RQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 3455779999999999999999999999999 999988 2346899999999999999998 999999999999997
Q ss_pred cCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHH
Q 013726 330 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIAS 407 (437)
Q Consensus 330 s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A 407 (437)
+. ..++|||+|||.++|+++|+++|++| |.|.+++++.+ +|.++|||||+|.+.++|
T Consensus 92 ~~--------------------~~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 92 QP--------------------TDALLCVANLPPSLTQQQFEELVRPF-GSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp CC--------------------CSCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred cC--------------------CCCEEEEcCCCCcCCHHHHHHHHHhc-CCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 53 22699999999999999999999995 99999999887 677999999999999999
Q ss_pred HHHHhhcCceeccCc--hhhhhh
Q 013726 408 STLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 408 ~kal~~~~~~~~~~~--~i~~~~ 428 (437)
.+|+...+...+... .+.|+.
T Consensus 151 ~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 151 ARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp HHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHhCCCEeCCcEEEEEECC
Confidence 999855544333332 345543
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=1.3e-24 Score=200.00 Aligned_cols=158 Identities=23% Similarity=0.288 Sum_probs=128.1
Q ss_pred CCcEEEEecCCc-cchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 255 IRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 255 ~~rtLfVgNLp~-~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
..++|||+|||+ ++|+++|+++|+.||.|.+|++..++ +|||||+|.+.++|.+|++ |+|..+.|+.|.|.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 458999999999 99999999999999999999998876 5899999999999999999 999999999999998764
Q ss_pred CCCCCCCC------------------CC-CCC--hhhhcccccEEEEEcCCccCCHHHHHHHhhhcCC-ceEEEEEeccC
Q 013726 333 AIAPVNPT------------------FL-PRT--EDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDY 390 (437)
Q Consensus 333 ~~~~~~~~------------------~~-pr~--~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G-~I~~v~i~kd~ 390 (437)
........ +. +.. ......+.++|||+|||..+|+++|+++|++| | .|..+++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~~v~~v~i~~~- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQK- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHT-TSCCCEEEESST-
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHc-CCCceEEEEEeC-
Confidence 32111000 00 000 00012346899999999999999999999995 9 9999999664
Q ss_pred CCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 391 HHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 391 g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
.+|||||+|.+.++|.+|+...+...+
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~ 183 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDL 183 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCcc
Confidence 268999999999999999886555433
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=1.6e-20 Score=160.00 Aligned_cols=109 Identities=20% Similarity=0.351 Sum_probs=73.9
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 333 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~ 333 (437)
..++|||+|||+++|+++|+++|++||.|.+|+++.++.+++|||||+|.+.++|.+|++ |+|..++|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 457899999999999999999999999999999999988789999999999999999998 9999999999999987632
Q ss_pred CCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHH
Q 013726 334 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 369 (437)
Q Consensus 334 ~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteed 369 (437)
.... ..........++|||+|||+++|++.
T Consensus 84 ~~~~------~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KERE------AELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------------
T ss_pred cccc------cccccccCCCCceEeCCCCCCccccc
Confidence 1111 01111233446899999999999863
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=8.1e-18 Score=149.96 Aligned_cols=135 Identities=12% Similarity=0.084 Sum_probs=97.9
Q ss_pred EEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeE-e------eeeeeEEeccCCCCCCCCCCCCCCChhhhcccccEE
Q 013726 285 DCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTM-L------GFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTI 356 (437)
Q Consensus 285 ~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~-l------~Gr~L~V~~s~~~~~~~~~~~~pr~~~~~~~~~~tL 356 (437)
+++++.+...++|||||+|.+.++|.+|++ +++.. + ++............. ..........++|
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l 73 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHH--------HHHHMDVEGMTSL 73 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCC--------SSCCCCCCBCCEE
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccc--------cccccCCCCCCEE
Confidence 467777877889999999999999999997 66432 2 222222211110000 0011112346899
Q ss_pred EEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 357 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 357 ~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
||+|||+++|+++|+++|++| |.|..|+++++ ++.++|||||+|.+.++|.+|+...+...+... .+.|+.
T Consensus 74 ~v~nl~~~~~~~~l~~~F~~~-G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 74 KVDNLTYRTSPDTLRRVFEKY-GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp EEESCCTTCCHHHHHHHHHHH-SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 999999999999999999996 99999999998 678999999999999999999987665444333 355554
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=133.14 Aligned_cols=78 Identities=23% Similarity=0.417 Sum_probs=72.9
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
-..++|||+|||+++|+++|+++|++||.|.+|+++.|+.+ ++|||||+|.+.++|.+|++ |||..++|++|.|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34578999999999999999999999999999999998765 58999999999999999998 9999999999999998
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
+
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 5
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=1.6e-16 Score=140.84 Aligned_cols=137 Identities=9% Similarity=0.049 Sum_probs=100.9
Q ss_pred EEeeCCCCCceEEEEEEcCHHHHHHHHH-h-cCeEeeeeeeEEeccCCCCCCCCC--CCCCCChhhhcccccEEEEEcCC
Q 013726 287 RICGDPNSVLRFAFIEFTDEEGARAALN-L-AGTMLGFYPVRVLPSKTAIAPVNP--TFLPRTEDEREMCARTIYCTNID 362 (437)
Q Consensus 287 ri~~d~~~s~GfaFVeF~~~e~A~~Al~-l-ng~~l~Gr~L~V~~s~~~~~~~~~--~~~pr~~~~~~~~~~tL~V~NLp 362 (437)
.+..+...-+|+++|+|.+.++|.+|++ + +|..++| .+.+..+......... ..............++|||+|||
T Consensus 4 al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 82 (150)
T 2i2y_A 4 KLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLG 82 (150)
T ss_dssp EEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCC
T ss_pred EeeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 3444444558999999999999999998 9 9999999 9999887532110000 00001111223456899999999
Q ss_pred ccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 363 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 363 ~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
+++|+++|+++|++| |.|.+|+++++ ++|||||+|.+.++|.+|+...+...++.. .+.|+.
T Consensus 83 ~~~t~~~l~~~F~~~-G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 83 NNGNKTELERAFGYY-GPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SCCSCHHHHHHHHHH-SCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCHHHHHHHHHhh-CCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 999999999999996 99999999987 688999999999999999875544333322 355553
No 25
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=2.9e-16 Score=132.64 Aligned_cols=102 Identities=22% Similarity=0.359 Sum_probs=90.0
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
...++|||+|||+++|+++|+++|+.||.|.+|++..+.. ++|||||+|.+.++|.+|+. |+|..++|+.|.|.++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE-TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT-TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3568999999999999999999999999999999987654 48999999999999999999 999999999999999751
Q ss_pred CCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCC
Q 013726 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG 379 (437)
Q Consensus 333 ~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G 379 (437)
.... ++++...++++|.++|++| |
T Consensus 85 --------------~~~~--------~~~~~~~~~~~l~~~~~~~-g 108 (115)
T 3lqv_A 85 --------------NRAF--------QKMDTKKKEEQLKLLKEKY-G 108 (115)
T ss_dssp --------------HHHT--------TTSCHHHHHHHHHHHHHHH-C
T ss_pred --------------Chhh--------hhhhHhHhHHHHHHHHHHh-C
Confidence 1100 6788899999999999996 7
No 26
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=130.62 Aligned_cols=99 Identities=22% Similarity=0.261 Sum_probs=81.8
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCCCC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIA 335 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~~~ 335 (437)
++|||+|||+++|+++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.+++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 48999999999999999999999999999999887 67999999999999999999 999999999999999875432
Q ss_pred CCCCCCCCCChhhhcccccEEEEEcCC
Q 013726 336 PVNPTFLPRTEDEREMCARTIYCTNID 362 (437)
Q Consensus 336 ~~~~~~~pr~~~~~~~~~~tL~V~NLp 362 (437)
....... ........+|||+||+
T Consensus 78 ~~~~~~~----~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 78 RSRFDRP----PARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCCSC----CCSCCCCSCCCSCCCC
T ss_pred cccCCCC----CccccCCCceecCCCC
Confidence 2211111 1112345789999997
No 27
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=126.37 Aligned_cols=80 Identities=29% Similarity=0.408 Sum_probs=75.6
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
+...++|||+|||+++|+++|+++|++||.|.+|+++.++.+++|||||+|.+.++|.+|+. |++..+.|+.|.|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 45678999999999999999999999999999999999987789999999999999999999 99999999999999986
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 92 ~ 92 (103)
T 2cqi_A 92 T 92 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 28
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-15 Score=125.73 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=75.6
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
+...++|||+|||+++|+++|+++|++||.|..|+++.++..++|||||+|.+.++|.+|+. |++..++|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 45679999999999999999999999999999999999887789999999999999999999 99999999999999986
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 92 ~ 92 (103)
T 2cq3_A 92 A 92 (103)
T ss_dssp S
T ss_pred c
Confidence 4
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=8.9e-16 Score=129.98 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=73.3
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++|+++|+++|++||.|.+|+++.|+.+ ++|||||+|.+.++|.+|++ |||..++|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999998865 59999999999999999999 9999999999999987
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 5
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.61 E-value=4.7e-16 Score=126.94 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=69.8
Q ss_pred CcEEEEecCCccchHHHHHHHHhcCC-CeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-h-cCeEeeeeeeEEecc
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-L-AGTMLGFYPVRVLPS 330 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~G-~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-l-ng~~l~Gr~L~V~~s 330 (437)
+++|||+|||+++|+++|+++|++|| .|.+|+++.|+.+ ++|||||+|.+.++|.+|++ + ++..++|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999988764 69999999999999999998 6 566799999999998
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
.
T Consensus 81 ~ 81 (91)
T 2lxi_A 81 D 81 (91)
T ss_dssp C
T ss_pred C
Confidence 6
No 31
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.61 E-value=3.9e-15 Score=125.71 Aligned_cols=84 Identities=23% Similarity=0.380 Sum_probs=76.1
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
.....++|||+|||+.+|+++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999988644 58999999999999999999 99999999999999
Q ss_pred ccCCCCC
Q 013726 329 PSKTAIA 335 (437)
Q Consensus 329 ~s~~~~~ 335 (437)
+++....
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9875433
No 32
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=1.9e-15 Score=120.35 Aligned_cols=78 Identities=31% Similarity=0.425 Sum_probs=72.3
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++++++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46689999999999999999999999999999999888655 58999999999999999998 9999999999999986
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.61 E-value=6.7e-16 Score=127.61 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=71.4
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCC--eeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCe----Eeeeee
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQ--VVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGT----MLGFYP 324 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~--I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~----~l~Gr~ 324 (437)
..-.||||+|||+++|+++|+++|++||. |.+|++++|+.+ ++|||||+|.+.++|.+|++ |||. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45679999999999999999999999995 678999998865 69999999999999999999 9986 589999
Q ss_pred eEEeccCC
Q 013726 325 VRVLPSKT 332 (437)
Q Consensus 325 L~V~~s~~ 332 (437)
|.|.+++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999863
No 34
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=3.1e-15 Score=119.97 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=72.5
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEec
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 329 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~ 329 (437)
.+...++|||+|||+++|+++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|.+|+++++..++|+.|.|.+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3557789999999999999999999999999999999988754 58999999999999999999888999999999986
Q ss_pred c
Q 013726 330 S 330 (437)
Q Consensus 330 s 330 (437)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.60 E-value=4.5e-15 Score=125.44 Aligned_cols=80 Identities=19% Similarity=0.409 Sum_probs=73.9
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |++..++|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999988754 58999999999999999998 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 102 a~~ 104 (115)
T 2cpz_A 102 KRS 104 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 36
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.3e-15 Score=121.45 Aligned_cols=79 Identities=25% Similarity=0.269 Sum_probs=73.5
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
+...++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|+. |+|..++|++|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 445689999999999999999999999999999999988764 58999999999999999999 999999999999998
Q ss_pred cC
Q 013726 330 SK 331 (437)
Q Consensus 330 s~ 331 (437)
++
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 76
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=123.06 Aligned_cols=79 Identities=27% Similarity=0.439 Sum_probs=73.2
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCC-----CCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~-----~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
..++|||+|||+++|+++|+++|++||.|..|++..++. .++|||||+|.+.++|.+|++ |+|..++|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 568999999999999999999999999999999998765 358999999999999999999 99999999999999
Q ss_pred ccCCC
Q 013726 329 PSKTA 333 (437)
Q Consensus 329 ~s~~~ 333 (437)
+++..
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 98643
No 38
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.9e-15 Score=122.96 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=72.9
Q ss_pred CCcEEEEecCCccchHHHHH----HHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 255 IRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~----~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
..++|||+|||+++++++|+ ++|++||.|.+|+++.++.+ +|||||+|.+.++|.+|++ |||..++|+.|.|.+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 55789999999999999999 99999999999999988877 8999999999999999999 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 87 a~~ 89 (96)
T 2dgx_A 87 ATG 89 (96)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 39
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=3.8e-15 Score=118.06 Aligned_cols=76 Identities=21% Similarity=0.373 Sum_probs=71.3
Q ss_pred CcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
+.+|||+|||+++++++|+++|++||.|.+++++.++.+ ++|||||+|.+.++|.+|+. |+|..++|++|.|.+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 368999999999999999999999999999999988654 48999999999999999999 99999999999999986
No 40
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=122.56 Aligned_cols=79 Identities=32% Similarity=0.487 Sum_probs=73.3
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
+...++|||+|||+.+++++|+++|++||.|.+|++..++.. ++|||||+|.+.++|.+|++ |++..++|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 445689999999999999999999999999999999988753 48999999999999999999 9999999999999987
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 41
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.60 E-value=8e-16 Score=124.75 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=67.9
Q ss_pred cEEEEecCCccchHHHHHHHHhcCC--CeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G--~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
.+|||+|||+++|+++|+++|++|| .|.+|+++.++.+ ++|||||+|.+.++|.+|++ |||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 9999999998754 58999999999999999998 99999999999999986
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 42
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.5e-15 Score=123.52 Aligned_cols=80 Identities=24% Similarity=0.309 Sum_probs=74.3
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|+. |+|..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 456799999999999999999999999999999999988654 58999999999999999999 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 92 a~~ 94 (103)
T 2cq0_A 92 AKP 94 (103)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 43
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=121.96 Aligned_cols=79 Identities=25% Similarity=0.323 Sum_probs=72.8
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++++++|+++|++||.|..|++..++.+ ++|||||+|.+.++|.+|++ |++..++|++|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 346689999999999999999999999999999999988754 58999999999999999998 999999999999998
Q ss_pred cC
Q 013726 330 SK 331 (437)
Q Consensus 330 s~ 331 (437)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 44
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.6e-15 Score=121.79 Aligned_cols=80 Identities=25% Similarity=0.305 Sum_probs=73.8
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++|+++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999988744 58999999999999999997 9999999999999998
Q ss_pred CCC
Q 013726 331 KTA 333 (437)
Q Consensus 331 ~~~ 333 (437)
...
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 45
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.59 E-value=2.1e-15 Score=121.12 Aligned_cols=78 Identities=37% Similarity=0.608 Sum_probs=72.9
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~~ 332 (437)
+.++|||+|||+++|+++|+++|++||.|.++++..++.+ ++|||||+|.+.++|.+|+.|+|..++|+.|.|.+++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 4589999999999999999999999999999999988644 69999999999999999999999999999999999864
No 46
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7e-15 Score=123.08 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=72.3
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
+...++|||+|||+++|+++|+++|++||.|..|++..+. .++|||||+|.+.++|.+|++ |++..++|+.|.|.+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR-GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS-SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 4467899999999999999999999999999999996653 368999999999999999998 99999999999999986
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 98 ~ 98 (109)
T 1x4a_A 98 S 98 (109)
T ss_dssp C
T ss_pred c
Confidence 4
No 47
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.59 E-value=4e-15 Score=119.01 Aligned_cols=77 Identities=25% Similarity=0.419 Sum_probs=71.7
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
..++|||+|||.++|+++|+++|++||.|.+|++..++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 5689999999999999999999999999999999988644 58999999999999999999 99999999999999975
No 48
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.1e-15 Score=120.00 Aligned_cols=78 Identities=29% Similarity=0.437 Sum_probs=73.1
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
..++|||+|||.++|+++|+++|++||.|..|++..++.+ ++|||||+|.+.++|.+|++ |+|..++|++|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 5689999999999999999999999999999999988754 68999999999999999999 99999999999999986
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 84 ~ 84 (95)
T 2dnz_A 84 E 84 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 49
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6e-15 Score=121.26 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=74.0
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
....++|||+|||.++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|++|++..++|+.|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 346689999999999999999999999999999999988754 589999999999999999999999999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
..
T Consensus 87 ~~ 88 (99)
T 2dgs_A 87 EP 88 (99)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 50
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.59 E-value=3.8e-15 Score=120.52 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=73.4
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
...++|||+|||+++|+++|+++|++||.|..|++..+...++|||||+|.+.++|.+|++ |++..++|+.|.|.+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3568999999999999999999999999999999998655579999999999999999999 999999999999999864
No 51
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=126.77 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=73.0
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
+...++|||+|||+++|+++|+++|++||.|.+|+++.++.. ++|||||+|.+.++|.+|+.+++..++|+.|.|.++.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 445689999999999999999999999999999999987753 6999999999999999999999999999999999864
No 52
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2e-15 Score=127.07 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=74.6
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
....++|||+|||.++|+++|+++|++||.|.+|++..++..++|||||+|.+.++|.+|++ |+|..++|+.|.|.+++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 44678999999999999999999999999999999998877789999999999999999999 99999999999999976
No 53
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=124.20 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=74.3
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|++||.|..|++..++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 446789999999999999999999999999999999988754 58999999999999999999 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 90 a~~ 92 (103)
T 2dnm_A 90 ARY 92 (103)
T ss_dssp CSS
T ss_pred CCc
Confidence 874
No 54
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.58 E-value=6.4e-15 Score=124.92 Aligned_cols=79 Identities=22% Similarity=0.411 Sum_probs=72.5
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
+...++|||+|||+++|+++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |||..++|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 456789999999999999999999999999999999988654 58999999999999999999 999999999999987
Q ss_pred cC
Q 013726 330 SK 331 (437)
Q Consensus 330 s~ 331 (437)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 55
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=7.2e-15 Score=121.00 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=73.2
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
+...++|||+|||+++|+++|+++|++||.|.+|++..++.. ++|||||+|.+.++|.+|++ |+|..++|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456789999999999999999999999999999999988732 58999999999999999998 9999999999999998
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
+
T Consensus 94 ~ 94 (100)
T 2do4_A 94 N 94 (100)
T ss_dssp C
T ss_pred C
Confidence 6
No 56
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=122.73 Aligned_cols=80 Identities=20% Similarity=0.394 Sum_probs=74.0
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
+...++|||+|||+++|+++|+++|++||.|..|++..+...++|||||+|.+.++|.+|++ |+|..++|+.|.|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 45678999999999999999999999999999999998844468999999999999999999 99999999999999986
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 92 ~ 92 (103)
T 2d9p_A 92 R 92 (103)
T ss_dssp S
T ss_pred c
Confidence 4
No 57
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.8e-15 Score=122.75 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=73.5
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeC-CC--CCceEEEEEEcCHHHHHHHHH-h-cCeEeeeeeeEE
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD-PN--SVLRFAFIEFTDEEGARAALN-L-AGTMLGFYPVRV 327 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d-~~--~s~GfaFVeF~~~e~A~~Al~-l-ng~~l~Gr~L~V 327 (437)
+...++|||+|||+++|+++|+++|++||.|..|+++.+ +. .++|||||+|.+.++|.+|+. | ++..+.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456789999999999999999999999999999999888 33 368999999999999999999 9 999999999999
Q ss_pred eccCC
Q 013726 328 LPSKT 332 (437)
Q Consensus 328 ~~s~~ 332 (437)
.+++.
T Consensus 92 ~~a~~ 96 (107)
T 2cph_A 92 EWADS 96 (107)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99864
No 58
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.58 E-value=8e-15 Score=121.65 Aligned_cols=80 Identities=25% Similarity=0.379 Sum_probs=73.4
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeee---eeeEE
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGF---YPVRV 327 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~G---r~L~V 327 (437)
....++|||+|||+++|+++|+++|++||.|..|++..++.. ++|||||+|.+.++|.+|++ |+|..+.| +.|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345789999999999999999999999999999999988743 48999999999999999999 99999988 99999
Q ss_pred eccCC
Q 013726 328 LPSKT 332 (437)
Q Consensus 328 ~~s~~ 332 (437)
.+++.
T Consensus 92 ~~a~~ 96 (105)
T 2dnh_A 92 KFADT 96 (105)
T ss_dssp EESCS
T ss_pred EECcc
Confidence 99864
No 59
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.7e-15 Score=122.56 Aligned_cols=80 Identities=31% Similarity=0.417 Sum_probs=74.0
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446789999999999999999999999999999999988744 58999999999999999999 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
+..
T Consensus 92 a~~ 94 (105)
T 1x5u_A 92 ASA 94 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 864
No 60
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=6.8e-15 Score=120.40 Aligned_cols=77 Identities=34% Similarity=0.473 Sum_probs=72.1
Q ss_pred CcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
.++|||+|||.++++++|+++|++||.|.+|++..++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.+++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 579999999999999999999999999999999988754 58999999999999999998 999999999999999863
No 61
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=3.4e-15 Score=123.69 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=72.4
Q ss_pred CCcEEEEecCCc------cchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeee-ee
Q 013726 255 IRRTVYVSDIDQ------QVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGF-YP 324 (437)
Q Consensus 255 ~~rtLfVgNLp~------~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~G-r~ 324 (437)
..++|||+|||+ ++++++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |||..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 458999999999 9999999999999999999999998865 58999999999999999998 99999999 99
Q ss_pred eEEeccC
Q 013726 325 VRVLPSK 331 (437)
Q Consensus 325 L~V~~s~ 331 (437)
|.|.++.
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 9999874
No 62
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.3e-15 Score=120.16 Aligned_cols=78 Identities=23% Similarity=0.449 Sum_probs=72.7
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEE-EEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDC-RICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~v-ri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
..++|||+|||+++|+++|+++|++||.|..| +++.++.+ ++|||||+|.+.++|.+|+. |+|..++|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56899999999999999999999999999999 99887544 58999999999999999999 9999999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
..
T Consensus 84 ~~ 85 (96)
T 1x5t_A 84 FK 85 (96)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 63
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.3e-15 Score=125.41 Aligned_cols=79 Identities=30% Similarity=0.439 Sum_probs=73.5
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
+...++|||+|||+++|+++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|+.|+|..++|+.|.|.++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 445689999999999999999999999999999999988764 689999999999999999999999999999999987
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
+
T Consensus 102 ~ 102 (114)
T 2cq4_A 102 Q 102 (114)
T ss_dssp H
T ss_pred C
Confidence 5
No 64
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=9.4e-15 Score=122.29 Aligned_cols=80 Identities=23% Similarity=0.312 Sum_probs=74.1
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hc------CeEeeee
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LA------GTMLGFY 323 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-ln------g~~l~Gr 323 (437)
....++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|+. |+ +..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 446789999999999999999999999999999999988764 58999999999999999999 99 9999999
Q ss_pred eeEEeccCC
Q 013726 324 PVRVLPSKT 332 (437)
Q Consensus 324 ~L~V~~s~~ 332 (437)
.|.|.++..
T Consensus 92 ~l~v~~a~~ 100 (111)
T 1x4h_A 92 QLKVDLAVT 100 (111)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 999999863
No 65
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.57 E-value=7.1e-15 Score=122.37 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=72.9
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
....++|||+|||+.+|+++|+++|+.||.|.+|+++.++.. ++|||||+|.+.++|.+|++ |+|..++|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 356789999999999999999999999999999999988743 48999999999999999999 9999999999999986
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 66
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.4e-15 Score=122.07 Aligned_cols=80 Identities=30% Similarity=0.414 Sum_probs=73.8
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..++|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 346789999999999999999999999999999999888654 68999999999999999998 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 89 a~~ 91 (102)
T 2cqb_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 67
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.4e-15 Score=122.46 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=73.4
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||.++|+++|+++|+.||.|.+|++..++.+ ++|||||+|.+.++|.+|+. |+|..++|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999988765 48999999999999999999 9999999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
..
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 63
No 68
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.57 E-value=6.6e-15 Score=117.82 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=71.9
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC---CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS---VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~---s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
..++|||+|||.++|+++|+++|++||.|.+|++..++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4589999999999999999999999999999999888753 58999999999999999999 9999999999999987
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
.
T Consensus 83 ~ 83 (88)
T 4a8x_A 83 L 83 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 69
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.6e-15 Score=124.06 Aligned_cols=76 Identities=24% Similarity=0.298 Sum_probs=69.5
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hc--CeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA--GTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-ln--g~~l~Gr~L~V~~ 329 (437)
+...++|||+|||+++|+++|+++|++||.|.+|+++.+ +|||||+|.+.++|.+|++ |+ +..+.|++|.|.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 446789999999999999999999999999999999876 5899999999999999999 76 4789999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 89 A~~ 91 (105)
T 1sjq_A 89 SNH 91 (105)
T ss_dssp CSS
T ss_pred cCC
Confidence 864
No 70
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.56 E-value=7.6e-15 Score=120.76 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=72.2
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeE--------EEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEee
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--------CRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLG 321 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~--------vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~ 321 (437)
+...++|||+|||.++|+++|+++|++||.|.. +++..++.+ ++|||||+|.+.++|.+|++ |+|..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345689999999999999999999999999999 999988754 58999999999999999999 9999999
Q ss_pred eeeeEEecc
Q 013726 322 FYPVRVLPS 330 (437)
Q Consensus 322 Gr~L~V~~s 330 (437)
|+.|.|.++
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999999886
No 71
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=122.70 Aligned_cols=81 Identities=15% Similarity=0.259 Sum_probs=73.9
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
.+...++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|++ +++ .+.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 3557799999999999999999999999999999999988754 68999999999999999999 888 8999999999
Q ss_pred ccCCC
Q 013726 329 PSKTA 333 (437)
Q Consensus 329 ~s~~~ 333 (437)
++...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 98643
No 72
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.56 E-value=9.5e-15 Score=122.88 Aligned_cols=79 Identities=27% Similarity=0.405 Sum_probs=73.5
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
+...++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 446689999999999999999999999999999999988764 58999999999999999999 999999999999999
Q ss_pred cC
Q 013726 330 SK 331 (437)
Q Consensus 330 s~ 331 (437)
++
T Consensus 103 a~ 104 (108)
T 2jrs_A 103 VT 104 (108)
T ss_dssp SC
T ss_pred cc
Confidence 75
No 73
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.7e-15 Score=121.90 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=73.7
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..++|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346689999999999999999999999999999999987654 58999999999999999998 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 89 a~~ 91 (102)
T 1x5s_A 89 AGK 91 (102)
T ss_dssp EEC
T ss_pred CCC
Confidence 864
No 74
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=123.62 Aligned_cols=80 Identities=23% Similarity=0.361 Sum_probs=73.8
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
...++|||+|||.++|+++|+++|++||.|.+|++..++.. ++|||||+|.+.++|.+|++ |+|..++|+.|.|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999988732 58999999999999999999 99999999999999986
Q ss_pred CC
Q 013726 332 TA 333 (437)
Q Consensus 332 ~~ 333 (437)
..
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 75
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.9e-15 Score=119.79 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=73.2
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCee-EEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeee----e
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVV-DCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYP----V 325 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~-~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~----L 325 (437)
...++|||+|||+++|+++|+++|++||.|. +|+++.++.+ ++|||||+|.+.++|.+|++ |||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3568999999999999999999999999999 9999988754 58999999999999999999 9999999999 9
Q ss_pred EEeccCC
Q 013726 326 RVLPSKT 332 (437)
Q Consensus 326 ~V~~s~~ 332 (437)
+|.+++.
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9998863
No 76
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.56 E-value=4.7e-15 Score=117.72 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=66.3
Q ss_pred CcEEEEecCCccc------hHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeee-eeEE
Q 013726 256 RRTVYVSDIDQQV------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFY-PVRV 327 (437)
Q Consensus 256 ~rtLfVgNLp~~~------tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr-~L~V 327 (437)
.++|||+|||..+ |+++|+++|++||.|.+|++..+...++|||||+|.+.++|.+|++ |||..++|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3789999999999 8899999999999999999885444579999999999999999999 999999999 8876
Q ss_pred e
Q 013726 328 L 328 (437)
Q Consensus 328 ~ 328 (437)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.56 E-value=7.5e-15 Score=122.04 Aligned_cols=80 Identities=20% Similarity=0.327 Sum_probs=73.7
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEe---eeeeeE
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTML---GFYPVR 326 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l---~Gr~L~ 326 (437)
+...++|||+|||.++|+++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |++..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 456789999999999999999999999999999999988754 68999999999999999999 999987 899999
Q ss_pred EeccCC
Q 013726 327 VLPSKT 332 (437)
Q Consensus 327 V~~s~~ 332 (437)
|.++..
T Consensus 90 v~~a~~ 95 (106)
T 2dgp_A 90 VKPADS 95 (106)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 999864
No 78
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-14 Score=120.66 Aligned_cols=81 Identities=25% Similarity=0.322 Sum_probs=74.0
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
....++|||+|||+++|+++|+++|++||.|.+|+++.++.. ++|||||+|.+.++|.+|++ |++..++|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345689999999999999999999999999999999988753 48999999999999999999 9999999999999998
Q ss_pred CCC
Q 013726 331 KTA 333 (437)
Q Consensus 331 ~~~ 333 (437)
...
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 643
No 79
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=6.4e-15 Score=124.22 Aligned_cols=79 Identities=14% Similarity=0.258 Sum_probs=72.9
Q ss_pred cCCcEEEEecCCccchHHHHH---HHHhcCCCeeEEEEeeCCC-----CCceEEEEEEcCHHHHHHHHH-hcCeEeeeee
Q 013726 254 IIRRTVYVSDIDQQVTEEQLA---ALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEEGARAALN-LAGTMLGFYP 324 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~---~~F~~~G~I~~vri~~d~~-----~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~ 324 (437)
...++|||+|||+++++++|+ ++|++||.|..|++..++. .++|||||+|.+.++|.+|++ |||..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456899999999999999999 9999999999999988775 357999999999999999999 9999999999
Q ss_pred eEEeccCC
Q 013726 325 VRVLPSKT 332 (437)
Q Consensus 325 L~V~~s~~ 332 (437)
|.|.++..
T Consensus 93 l~V~~a~~ 100 (111)
T 2cpi_A 93 LKASLGTT 100 (111)
T ss_dssp EEEESCCC
T ss_pred EEEEeccc
Confidence 99999864
No 80
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=122.50 Aligned_cols=81 Identities=25% Similarity=0.339 Sum_probs=73.9
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCee--------EEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEe
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV--------DCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTML 320 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~--------~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l 320 (437)
.+...++|||+|||+++|+++|+++|++||.|. .|++..++.+ ++|||||+|.+.++|.+|++ |+|..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345679999999999999999999999999999 6999888654 58999999999999999999 999999
Q ss_pred eeeeeEEeccCC
Q 013726 321 GFYPVRVLPSKT 332 (437)
Q Consensus 321 ~Gr~L~V~~s~~ 332 (437)
.|+.|.|.+++.
T Consensus 91 ~g~~l~V~~a~~ 102 (113)
T 2cpe_A 91 QGSKLKVSLARK 102 (113)
T ss_dssp TTEECEEECSSC
T ss_pred CCCEEEEEECCC
Confidence 999999999864
No 81
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.55 E-value=3.1e-15 Score=139.84 Aligned_cols=79 Identities=22% Similarity=0.436 Sum_probs=74.2
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
....++|||+|||+.+|+++|+++|+.||.|.+|+++.+..+++|||||+|.+.++|.+|++ |||..|+|++|.|.++.
T Consensus 100 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 100 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 34567899999999999999999999999999999999887789999999999999999999 99999999999999875
No 82
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.6e-15 Score=119.02 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=71.7
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++++++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |||..++|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35689999999999999999999999999999999988654 58999999999999999999 9999999999998875
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 83
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=1.5e-14 Score=123.69 Aligned_cols=82 Identities=33% Similarity=0.548 Sum_probs=74.9
Q ss_pred hhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEe
Q 013726 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (437)
Q Consensus 251 ~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~ 328 (437)
..+...++|||+|||.++|+++|+++|++||.|.+|++..++.+ ++|||||+|.+.++|.+|+.|+|..++|+.|.|.
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVL 110 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 34456789999999999999999999999999999999988644 6999999999999999999999999999999999
Q ss_pred ccCC
Q 013726 329 PSKT 332 (437)
Q Consensus 329 ~s~~ 332 (437)
+++.
T Consensus 111 ~a~~ 114 (124)
T 2jwn_A 111 PKRT 114 (124)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9864
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.55 E-value=4.1e-15 Score=115.92 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=68.2
Q ss_pred EEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 258 tLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
+|||+|||+++|+++|+++|++||.|.+|++..++.+ ++|||||+|.+.++|.+|+++++..++|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 4899999999999999999999999999999888743 689999999999999999999999999999999864
No 85
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=2.2e-14 Score=118.80 Aligned_cols=79 Identities=22% Similarity=0.392 Sum_probs=72.9
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
....++|||+|||+++|+++|+++|++|| |..|+++.++.+ ++|||||+|.+.++|.+|+.|++..++|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34578999999999999999999999997 999999998764 589999999999999999999999999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
..
T Consensus 91 ~~ 92 (103)
T 2dng_A 91 EG 92 (103)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 86
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.55 E-value=4.5e-14 Score=123.06 Aligned_cols=82 Identities=24% Similarity=0.340 Sum_probs=75.5
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
.+...++|||+|||.++|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999988765 48999999999999999999 99999999999999
Q ss_pred ccCCC
Q 013726 329 PSKTA 333 (437)
Q Consensus 329 ~s~~~ 333 (437)
+++..
T Consensus 118 ~a~~~ 122 (139)
T 1u6f_A 118 LAASG 122 (139)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98643
No 87
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.55 E-value=1e-14 Score=122.13 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=73.6
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||.++|+++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|.+|+. |+|..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999888654 58999999999999999999 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
+..
T Consensus 103 a~~ 105 (110)
T 1oo0_B 103 CFV 105 (110)
T ss_dssp SEE
T ss_pred ccc
Confidence 863
No 88
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.55 E-value=9.7e-15 Score=118.93 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=67.4
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++ ||+..++|++|.|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999965 57999999999999999999 9999999999999876
No 89
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=120.24 Aligned_cols=80 Identities=25% Similarity=0.361 Sum_probs=74.0
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
+...++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|+..++..++|+.|.|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 456799999999999999999999999999999999998754 589999999999999999999999999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
..
T Consensus 93 ~~ 94 (105)
T 2dh8_A 93 TP 94 (105)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 90
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=5.8e-15 Score=131.03 Aligned_cols=79 Identities=11% Similarity=0.248 Sum_probs=72.8
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
....++|||+|||+++|+++|+++|++||.|.++++..++.+ ++|||||+|.+.++|.+|++++|..++|++|.|.++
T Consensus 84 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 84 QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEEC
T ss_pred ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeec
Confidence 345679999999999999999999999999999999988643 699999999999999999999999999999999997
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
.
T Consensus 164 ~ 164 (167)
T 2cjk_A 164 E 164 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 91
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.54 E-value=9.7e-15 Score=126.94 Aligned_cols=80 Identities=28% Similarity=0.257 Sum_probs=74.2
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
+...++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |+|..++|++|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999999988754 68999999999999999999 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
+..
T Consensus 123 a~~ 125 (129)
T 2kxn_B 123 SIT 125 (129)
T ss_dssp CSS
T ss_pred ecC
Confidence 863
No 92
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=9.7e-15 Score=121.90 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=71.6
Q ss_pred ccCCcEEEEecCCccc------hHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeee-e
Q 013726 253 EIIRRTVYVSDIDQQV------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFY-P 324 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~------tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr-~ 324 (437)
+...++|||+|||+.+ |+++|+++|++||.|.+|++......++|||||+|.+.++|.+|+. |||..++|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3456899999999999 8899999999999999999985444579999999999999999999 999999998 9
Q ss_pred eEEeccC
Q 013726 325 VRVLPSK 331 (437)
Q Consensus 325 L~V~~s~ 331 (437)
|.|.++.
T Consensus 92 l~V~~a~ 98 (105)
T 2nlw_A 92 FRVNLFT 98 (105)
T ss_dssp EEEECSC
T ss_pred EEEEEcc
Confidence 9999875
No 93
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=119.26 Aligned_cols=78 Identities=26% Similarity=0.410 Sum_probs=72.3
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC---CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS---VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~---s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++|+++|+++|+.|| |..|+++.++.+ ++|||||+|.+.++|.+|+.|++..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4568999999999999999999999999 999999988753 589999999999999999999999999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
..
T Consensus 92 ~~ 93 (104)
T 1wi8_A 92 DQ 93 (104)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 94
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=129.24 Aligned_cols=78 Identities=24% Similarity=0.330 Sum_probs=71.3
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCC--CeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G--~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
...++|||+|||+++|+++|+++|+.|| .|.+|+++.|+.+ ++|||||+|.+.++|.+|++ |||..++|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 9999999998765 58999999999999999999 99999999999999
Q ss_pred ccC
Q 013726 329 PSK 331 (437)
Q Consensus 329 ~s~ 331 (437)
++.
T Consensus 133 ~a~ 135 (156)
T 3n9u_C 133 PAT 135 (156)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 95
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=119.58 Aligned_cols=80 Identities=25% Similarity=0.384 Sum_probs=73.4
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhc-CCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeE-eeeeeeEEe
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTM-LGFYPVRVL 328 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~-~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~-l~Gr~L~V~ 328 (437)
....++|||+|||+++|+++|+++|++ ||.|.+|+++.++.. ++|||||+|.+.++|.+|++ |++.. ++|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 345689999999999999999999999 999999999988733 58999999999999999999 99999 999999999
Q ss_pred ccCC
Q 013726 329 PSKT 332 (437)
Q Consensus 329 ~s~~ 332 (437)
++..
T Consensus 86 ~a~~ 89 (104)
T 2dhg_A 86 VAIP 89 (104)
T ss_dssp BCCC
T ss_pred EccC
Confidence 9864
No 96
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=6.9e-15 Score=121.67 Aligned_cols=78 Identities=32% Similarity=0.448 Sum_probs=72.7
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++++++|+++|++||.|..|++..++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35589999999999999999999999999999999988754 48999999999999999998 9999999999999997
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
.
T Consensus 86 ~ 86 (104)
T 1p1t_A 86 A 86 (104)
T ss_dssp T
T ss_pred C
Confidence 5
No 97
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4e-14 Score=118.59 Aligned_cols=78 Identities=23% Similarity=0.366 Sum_probs=72.3
Q ss_pred hhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 251 ~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
..+...++|||+|||.++|+++|+++|++||.|..|++..+ +|||||+|.+.++|.+|+. |+|..++|+.|.|.+
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 34566789999999999999999999999999999999876 5899999999999999998 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 96 a~~ 98 (109)
T 1x4g_A 96 GKE 98 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 98
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.1e-14 Score=118.92 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=68.6
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-h--cCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-L--AGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-l--ng~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++|+++|+++|++||.|.+|+++.+ +|||||+|.+.++|.+|++ | ++..+.|++|.|.++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 45689999999999999999999999999999999865 5899999999999999998 6 578899999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
+.
T Consensus 89 ~~ 90 (101)
T 2cq1_A 89 NH 90 (101)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 99
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.4e-14 Score=116.33 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=72.3
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
....++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|+. ++..++|+.|.|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 456789999999999999999999999999999999988754 58999999999999999999 578999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
..
T Consensus 91 ~~ 92 (103)
T 2cqg_A 91 NS 92 (103)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 100
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=114.75 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=69.4
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-h-cCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-L-AGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-l-ng~~l~Gr~L~V~~s 330 (437)
+...++|||+|||.++|+++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|++ | +|..++|++|.|.++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 446689999999999999999999999999999999864 5899999999999999999 8 999999999999986
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 101
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.53 E-value=2.9e-14 Score=119.95 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=70.0
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEec
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 329 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~ 329 (437)
.+...++|||+|||+++|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|++..+..++|+.|.|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 3456789999999999999999999999999999999988754 68999999999999999999556999999999999
Q ss_pred cC
Q 013726 330 SK 331 (437)
Q Consensus 330 s~ 331 (437)
+.
T Consensus 101 a~ 102 (109)
T 2rs2_A 101 AF 102 (109)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 102
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.8e-14 Score=127.09 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=72.6
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||..+|+++|+++|++||.|.++++..++.+ ++|||||+|.+.++|.+|+. |+|..++|++|.|.++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 45689999999999999999999999999999999988654 58999999999999999999 9999999999999987
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 103
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.2e-14 Score=118.33 Aligned_cols=75 Identities=24% Similarity=0.247 Sum_probs=69.3
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
+...++|||+|||.++|+++|+++|++||.|.+|++.. ++|||||+|.+.++|.+|+. |+|..++|+.|.|.+++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 34568999999999999999999999999999999973 46899999999999999998 99999999999999875
No 104
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4e-14 Score=114.37 Aligned_cols=73 Identities=23% Similarity=0.422 Sum_probs=68.7
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
...++|||+|||.++|+++|+++|++||.|..|++. +|||||+|.+.++|.+|++ |++..++|+.|.|.+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 466899999999999999999999999999999997 4799999999999999998 999999999999999864
No 105
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.5e-14 Score=120.11 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=73.7
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
+...++|||+|||+++|+++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|.+|++.++..++|+.|.|.++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 345689999999999999999999999999999999988754 589999999999999999999999999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
..
T Consensus 104 ~~ 105 (116)
T 1x4b_A 104 VA 105 (116)
T ss_dssp SS
T ss_pred CC
Confidence 63
No 106
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=122.78 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=73.0
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCe-eEEEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQV-VDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I-~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
+...++|||+|||+++|+++|+++|+.||.| ..|+++.++.. ++|||||+|.+.++|.+|+++++..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 4467899999999999999999999999999 89999988743 699999999999999999999999999999999987
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
.
T Consensus 92 ~ 92 (114)
T 2cpy_A 92 T 92 (114)
T ss_dssp C
T ss_pred C
Confidence 5
No 107
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.52 E-value=1.3e-14 Score=127.05 Aligned_cols=80 Identities=24% Similarity=0.335 Sum_probs=74.1
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999999887643 69999999999999999999 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 124 a~~ 126 (135)
T 2lea_A 124 ARY 126 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 108
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.52 E-value=1.3e-14 Score=118.09 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=70.5
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
..++|||+|||+++|+++|+++|++||.|..++++.++.+ ++|||||+|.+.++|.+|++ |++..++|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4589999999999999999999999999998888876654 58999999999999999999 99999999999999874
No 109
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=1.7e-14 Score=123.25 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=72.7
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCC---eeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEe
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQ---VVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~---I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~ 328 (437)
....++|||+|||+++|+++|+++|+.||. |..|+++.++.. ++|||||+|.+.++|.+|+++++..|+|+.|.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 346789999999999999999999999999 899999988764 5999999999999999999999999999999998
Q ss_pred ccC
Q 013726 329 PSK 331 (437)
Q Consensus 329 ~s~ 331 (437)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 874
No 110
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.8e-14 Score=115.00 Aligned_cols=75 Identities=23% Similarity=0.262 Sum_probs=69.6
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEee--eeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG--FYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~--Gr~L~V~~s 330 (437)
...++|||+|||+++|+++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|++ |++..+. |+.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 35689999999999999999999999999999999765 5899999999999999999 9999999 999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
+.
T Consensus 91 ~~ 92 (97)
T 1why_A 91 KS 92 (97)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 111
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1e-13 Score=116.05 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=69.2
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeee-----eeeEEe
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF-----YPVRVL 328 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~G-----r~L~V~ 328 (437)
..++|||+|||+++|+++|+++|++||.|..|+++.+ |||||+|.+.++|.+|++ ||+..+.| +.|.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 5689999999999999999999999999999999876 799999999999999999 99999999 999999
Q ss_pred ccCC
Q 013726 329 PSKT 332 (437)
Q Consensus 329 ~s~~ 332 (437)
++..
T Consensus 89 ~a~~ 92 (108)
T 1x4c_A 89 VDGP 92 (108)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 9864
No 112
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.51 E-value=7e-14 Score=119.78 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=74.1
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
....++|||+|||+++++++|+++|++||.|.+|++..++.. ++|||||+|.+.++|.+|++ |+|..++|+.|.|.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 345689999999999999999999999999999999988733 58999999999999999999 9999999999999998
Q ss_pred CCC
Q 013726 331 KTA 333 (437)
Q Consensus 331 ~~~ 333 (437)
...
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 643
No 113
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2e-14 Score=117.72 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=71.2
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++|+++|+++|++||.|..+.++.++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35689999999999999999999999999988887776654 58999999999999999998 9999999999999997
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
.
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 5
No 114
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.4e-14 Score=122.28 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=68.9
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hc--CeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA--GTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-ln--g~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++|+++|+++|++||.|.+|+++.+ +|||||+|.+.++|.+|++ |+ +..+.|++|.|.++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 45689999999999999999999999999999999876 5899999999999999999 87 46899999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
+.
T Consensus 105 ~~ 106 (119)
T 2ad9_A 105 NH 106 (119)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 115
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.1e-14 Score=116.77 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=68.6
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
....++|||+|||+++|+++|+++|++||.|. ++++.+ .++|||||+|.+.++|.+|++ |||..++|+.|.|.+++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34568999999999999999999999999997 666654 457999999999999999998 99999999999999986
No 116
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1e-14 Score=114.00 Aligned_cols=73 Identities=23% Similarity=0.394 Sum_probs=67.9
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
++|||+|||+++|+++|+++|++||.|.+|++..++.+ ++|||||+|.+.++|.+|++ ++ ..++|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999988754 68999999999999999999 77 9999999999875
No 117
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.3e-14 Score=113.79 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=72.1
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
+...++|||+|||+++|+++|+++|+.| .|..|+++.+... ++|||||+|.+.++|.+|+.|+|..++|+.|.|.++.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 3466899999999999999999999999 9999999988433 5899999999999999999999999999999999986
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 86 ~ 86 (91)
T 2dgw_A 86 S 86 (91)
T ss_dssp S
T ss_pred c
Confidence 3
No 118
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.51 E-value=6.3e-14 Score=124.76 Aligned_cols=80 Identities=25% Similarity=0.283 Sum_probs=74.6
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|++ |++..|+|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999998765 58999999999999999999 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 116 a~~ 118 (156)
T 1h2v_Z 116 DAG 118 (156)
T ss_dssp ESC
T ss_pred CCC
Confidence 864
No 119
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.51 E-value=5.2e-14 Score=122.25 Aligned_cols=78 Identities=29% Similarity=0.411 Sum_probs=71.5
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|++||.|..+++..++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 346789999999999999999999999999999999888654 58999999999999999998 999999999999986
Q ss_pred c
Q 013726 330 S 330 (437)
Q Consensus 330 s 330 (437)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 120
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.51 E-value=2.7e-14 Score=122.46 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=73.6
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|+.||.|..|.++.++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345689999999999999999999999999999999988644 58999999999999999998 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
+..
T Consensus 99 a~~ 101 (126)
T 3ex7_B 99 CFV 101 (126)
T ss_dssp SEE
T ss_pred ecC
Confidence 864
No 121
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=117.32 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=64.0
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||+++|+++|+++|++| |+|.+|++++| +|.++|||||+|.+.++|.+|+...+...++.. .|.||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSI-GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45799999999999999999999995 99999999987 578999999999999999999976655444433 35565
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
+
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 3
No 122
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.1e-14 Score=117.72 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=71.3
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEe--------e
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTML--------G 321 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l--------~ 321 (437)
.+...++|||+|||+++|+++|+++|+.||.|.+|+++.++.. ++|||||+|.+.++|.+|++ |||..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456789999999999999999999999999999999988733 48999999999999999999 999999 4
Q ss_pred eeeeEEeccC
Q 013726 322 FYPVRVLPSK 331 (437)
Q Consensus 322 Gr~L~V~~s~ 331 (437)
+++|.|.++.
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 6678887765
No 123
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.50 E-value=6.9e-14 Score=129.16 Aligned_cols=82 Identities=21% Similarity=0.398 Sum_probs=75.2
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
.....++|||+|||.++|+++|+++|+.||.|..|++..++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.
T Consensus 121 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 121 EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 200 (216)
T ss_dssp HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEE
Confidence 3456789999999999999999999999999999999988654 58999999999999999999 99999999999999
Q ss_pred ccCCC
Q 013726 329 PSKTA 333 (437)
Q Consensus 329 ~s~~~ 333 (437)
++...
T Consensus 201 ~a~~~ 205 (216)
T 2qfj_A 201 KAVTP 205 (216)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98754
No 124
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.50 E-value=2.6e-14 Score=121.49 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=69.5
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCC-CeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G-~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
...++|||+|||+++|+++|+++|++|| .|..+++..+ .++|||||+|.+.++|.+|++ |||..++|+.|.|.++.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3557999999999999999999999999 8999988543 367999999999999999998 99999999999999875
No 125
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.4e-14 Score=116.86 Aligned_cols=76 Identities=25% Similarity=0.266 Sum_probs=70.4
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
....++|||+|||+.+|+++|+++|++||.|..|++..+ +|||||+|.+.++|.+|++ |+|..++|++|.|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 346689999999999999999999999999999999855 5899999999999999998 99999999999999986
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 126
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.50 E-value=4.9e-14 Score=117.68 Aligned_cols=76 Identities=24% Similarity=0.211 Sum_probs=68.6
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeE--eeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTM--LGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~--l~Gr~L~V~~ 329 (437)
...+++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++ |++.. +.|++|.|.+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 346789999999999999999999999999999999753 5899999999999999999 88765 7899999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 94 S~~ 96 (100)
T 3r27_A 94 STS 96 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 863
No 127
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3e-14 Score=119.35 Aligned_cols=75 Identities=29% Similarity=0.301 Sum_probs=68.3
Q ss_pred cCCcEEEEecCCc-cchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcC--eEeeeeeeEEec
Q 013726 254 IIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG--TMLGFYPVRVLP 329 (437)
Q Consensus 254 ~~~rtLfVgNLp~-~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng--~~l~Gr~L~V~~ 329 (437)
...++|||+|||+ ++|+++|+++|++||.|.+|+++.++ |||||+|.+.++|.+|++ |++ ..+.|++|.|.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 3578999999999 99999999999999999999998764 799999999999999999 875 469999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 89 a~~ 91 (102)
T 1x4d_A 89 SQK 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 863
No 128
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.3e-14 Score=120.12 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=69.8
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
...++|||+|||+++|+++|+++|++||.|..|++.. ++|||||+|.+.++|.+|+. |||..++|+.|.|.++..
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3468999999999999999999999999999999864 45899999999999999999 999999999999999865
Q ss_pred C
Q 013726 333 A 333 (437)
Q Consensus 333 ~ 333 (437)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 129
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.50 E-value=7.6e-15 Score=118.40 Aligned_cols=75 Identities=27% Similarity=0.425 Sum_probs=69.2
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
++|||+|||.++++++|+++|++||.|.+|++..++.+ ++|||||+|.+.+ |.+|+. |+|..++|+.|.|.++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999999999999999999999999999988754 6999999999999 999999 999999999999999864
No 130
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.4e-14 Score=124.49 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=69.9
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
....++|||+|||+++|+++|+++|+.||.|..+.++.+..+ ++|||||+|.+.++|.+||.|++..|+|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 345689999999999999999999999999988555544433 589999999999999999999999999999999987
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 131
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.1e-14 Score=119.68 Aligned_cols=78 Identities=21% Similarity=0.200 Sum_probs=70.8
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccCC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~~ 332 (437)
...++|||+|||+++|+++|+++|+.||. .+|+++.++.. ++|||||+|.+.++|.+||++++..|+|+.|.|..+..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 45689999999999999999999999995 49999988743 59999999999999999999999999999999998753
No 132
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1e-13 Score=112.41 Aligned_cols=74 Identities=26% Similarity=0.368 Sum_probs=68.8
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
....++|||+|||+++|+++|+++|++||.|..|++.+ +||||+|.+.++|.+|++ |+|..+.|+.|.|.+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 44678999999999999999999999999999999973 499999999999999998 99999999999999986
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 81 ~ 81 (92)
T 2dgt_A 81 S 81 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 133
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=119.61 Aligned_cols=78 Identities=26% Similarity=0.412 Sum_probs=69.7
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCC---CCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP---NSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~---~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|+.|| |.+|++..++ ..++|||||+|.+.++|.+|+.|+|..++|+.|.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 34668999999999999999999999999 9999999886 2369999999999999999999999999999999998
Q ss_pred cC
Q 013726 330 SK 331 (437)
Q Consensus 330 s~ 331 (437)
++
T Consensus 95 a~ 96 (100)
T 2j76_E 95 AD 96 (100)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 134
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.8e-14 Score=118.31 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=67.8
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcC--eEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG--TMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng--~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|.+|++ |++ ..++|++|.|.++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 35689999999999999999999999999999999764 5899999999999999998 865 4599999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
+.
T Consensus 89 ~~ 90 (104)
T 1wex_A 89 TS 90 (104)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 135
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=5.9e-14 Score=118.09 Aligned_cols=75 Identities=28% Similarity=0.462 Sum_probs=69.7
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
.+...++|||+|||+++|+++|+++|++||.|..|++. +|||||+|.+.++|.+|++ |+|..++|+.|.|.++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34567899999999999999999999999999999998 5899999999999999999 9999999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
+.
T Consensus 101 ~~ 102 (108)
T 2jvo_A 101 KL 102 (108)
T ss_dssp SC
T ss_pred cC
Confidence 63
No 136
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.49 E-value=5.6e-14 Score=124.95 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=73.6
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++|+++|+++|+.||.|.+|++..++.+ ++|||||+|.+.++|.+|++ |+|..++|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999988644 69999999999999999998 9999999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
+.
T Consensus 148 ~~ 149 (158)
T 2kn4_A 148 RY 149 (158)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 137
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.8e-14 Score=118.10 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=70.7
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeE-EEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD-CRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~-vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
...++|||+|||+++|+++|+++|+.||.|.. |+++.+... ++|||||+|.+.++|.+|+..++..++|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 45689999999999999999999999999987 888777432 5899999999999999999999999999999998875
No 138
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.49 E-value=2.2e-14 Score=126.16 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=72.7
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCC---eeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEe
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQ---VVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~---I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~ 328 (437)
....++|||+|||+++|+++|+++|+.||. |.+|+++.++.. ++|||||+|.+.++|.+|+++++..++|+.|.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 346689999999999999999999999999 899999988764 5999999999999999999999999999999999
Q ss_pred ccC
Q 013726 329 PSK 331 (437)
Q Consensus 329 ~s~ 331 (437)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 864
No 139
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.8e-14 Score=117.18 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=71.5
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCC-eeEEEEe-eCCCC--CceEEEEEEcCHHHHHHHHH-hc--CeEeeeeeeEE
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRIC-GDPNS--VLRFAFIEFTDEEGARAALN-LA--GTMLGFYPVRV 327 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~-I~~vri~-~d~~~--s~GfaFVeF~~~e~A~~Al~-ln--g~~l~Gr~L~V 327 (437)
..++|||+|||+++|+++|+++|++||. |.+|.++ .++.+ ++|||||+|.+.++|.+|++ |+ +..++|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5689999999999999999999999998 9999998 66653 69999999999999999999 96 58999999999
Q ss_pred eccCCC
Q 013726 328 LPSKTA 333 (437)
Q Consensus 328 ~~s~~~ 333 (437)
.+++..
T Consensus 87 ~~a~~~ 92 (109)
T 2dis_A 87 DWAEPE 92 (109)
T ss_dssp EESCSS
T ss_pred EEcCCC
Confidence 998643
No 140
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=112.54 Aligned_cols=74 Identities=30% Similarity=0.402 Sum_probs=67.1
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
..++|||+|||+++|+++|+++|++||.|.+| +.++.+++ ||||+|.+.++|.+|+.|+|..++|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 45799999999999999999999999999987 45555445 9999999999999999999999999999999875
No 141
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=7e-14 Score=112.96 Aligned_cols=74 Identities=24% Similarity=0.435 Sum_probs=68.8
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
+...++|||+|||+++|+++|+++|++||.|..|++.+ +||||+|.+.++|.+|++ |+|..++|+.|.|.+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 44678999999999999999999999999999999973 499999999999999999 99999999999999986
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 80 ~ 80 (90)
T 2dnp_A 80 K 80 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.49 E-value=1.7e-14 Score=125.19 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=72.4
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeE--EEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCe----Eeeee
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--CRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGT----MLGFY 323 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~--vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~----~l~Gr 323 (437)
+...++|||+|||+++|+++|+++|++||.|.. |+++.|+.+ ++|||||+|.+. +|.+|+. |+|. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999977 999998854 599999999999 9999999 9999 99999
Q ss_pred eeEEeccCC
Q 013726 324 PVRVLPSKT 332 (437)
Q Consensus 324 ~L~V~~s~~ 332 (437)
.|.|.+++.
T Consensus 99 ~l~V~~a~~ 107 (131)
T 2m2b_A 99 TINVEFAKG 107 (131)
T ss_dssp CCCCEECCC
T ss_pred EEEEEECCC
Confidence 999999864
No 143
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=9.6e-14 Score=114.37 Aligned_cols=73 Identities=19% Similarity=0.326 Sum_probs=68.3
Q ss_pred ccCCcEEEEecCCc-cchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~-~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
....++|||+|||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|+. |+|..++|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 34678999999998 99999999999999999999983 5899999999999999999 9999999999999997
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
+
T Consensus 93 ~ 93 (97)
T 2xnq_A 93 S 93 (97)
T ss_dssp C
T ss_pred C
Confidence 6
No 144
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.49 E-value=5.7e-14 Score=119.20 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=64.4
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
.++|||+|||+++|+++|+++|++| |.|.+|+|+++.+.++|||||+|.+.++|++|+...+...++.. .+.|+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~-G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc-CCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 4789999999999999999999995 99999999999888999999999999999999977665554443 355554
No 145
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.49 E-value=1e-14 Score=113.56 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=67.7
Q ss_pred EEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 258 tLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
+|||+|||+++|+++|+++|++||.|.+|++..++.+ ++|||||+|.+.++|.+|+++++..++|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999888754 589999999999999999999999999999998763
No 146
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=6.8e-14 Score=118.44 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=69.7
Q ss_pred CcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
.++|||+|||+++|+++|+++|+.| .|.+|+++.++.. ++|||||+|.+.++|.+|+.+++..|+|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4799999999999999999999999 8999999988754 6999999999999999999999999999999998764
No 147
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=3.1e-14 Score=126.85 Aligned_cols=77 Identities=25% Similarity=0.437 Sum_probs=69.9
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEee---eeeeEEe
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLG---FYPVRVL 328 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~---Gr~L~V~ 328 (437)
...++|||+|||+++|+++|+++|++||.|.++++..++.. ++|||||+|.+.++|.+|++ |||..+. |++|.|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 35689999999999999999999999999999999988654 58999999999999999998 9998776 4999998
Q ss_pred cc
Q 013726 329 PS 330 (437)
Q Consensus 329 ~s 330 (437)
++
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 76
No 148
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=9.3e-14 Score=116.20 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=65.2
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccC-chhhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN-PSIAWLEE 429 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~-~~i~~~~~ 429 (437)
..++|||+|||+++|+++|+++|++| |.|.+|+|+++ .+.++|||||+|.+.++|.+|+......+.+. ..|.|+.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~-G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDK-GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTS-SCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhc-CCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 45899999999999999999999995 99999999988 57799999999999999999998544333333 35777766
Q ss_pred h
Q 013726 430 F 430 (437)
Q Consensus 430 ~ 430 (437)
+
T Consensus 89 ~ 89 (103)
T 1s79_A 89 Y 89 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 149
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.6e-13 Score=111.56 Aligned_cols=74 Identities=26% Similarity=0.395 Sum_probs=68.2
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcC--CCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGC--GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~--G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|++| |.|..|++. +|||||+|.+.++|.+|+. |+|..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999 999999875 4799999999999999999 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 86 a~~ 88 (99)
T 2cpd_A 86 AKP 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 150
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=114.14 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=68.2
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCC-CCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~-~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
+...++|||+|||+++|+++|+++|++||.| +++.+.. .++|||||+|.+.++|.+|+. |++..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4567999999999999999999999999987 4555532 358999999999999999999 9999999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
+.
T Consensus 89 ~~ 90 (101)
T 2fc9_A 89 GP 90 (101)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 151
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.47 E-value=2.2e-14 Score=127.82 Aligned_cols=76 Identities=18% Similarity=0.329 Sum_probs=71.3
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
..++|||+|||..+|+++|+++|++||.|..+++..++.+ ++|||||+|.+.++|.+|++ |+|..++|++|.|.++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4689999999999999999999999999999999988644 58999999999999999999 9999999999999986
No 152
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.47 E-value=1.8e-13 Score=113.45 Aligned_cols=74 Identities=24% Similarity=0.406 Sum_probs=68.5
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
...++|||+|||+++|+++|+++|++||.|..|++. +|||||+|.+.++|.+|++ |++..+.|+.|.|.+++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 356899999999999999999999999999999986 3599999999999999999 999999999999999864
Q ss_pred C
Q 013726 333 A 333 (437)
Q Consensus 333 ~ 333 (437)
.
T Consensus 83 ~ 83 (103)
T 2dgu_A 83 P 83 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 153
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.47 E-value=8.6e-14 Score=126.62 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=71.9
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
...++|||+|||+++|+++|+++|+.||.|..|++..++.+ ++|||||+|.+.++|.+|+..++..++|+.|.|.++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 45689999999999999999999999999999999988644 5999999999999999999978999999999999975
No 154
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=2e-14 Score=120.36 Aligned_cols=79 Identities=16% Similarity=0.099 Sum_probs=72.4
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCC---eeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEe
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQ---VVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~---I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~ 328 (437)
....++|||+|||+++|+++|+++|+.||. |..|+++.++.. ++|||||+|.+.++|.+|+.+++..++|+.|.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 346789999999999999999999999988 899999888763 6999999999999999999999999999999998
Q ss_pred ccC
Q 013726 329 PSK 331 (437)
Q Consensus 329 ~s~ 331 (437)
++.
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 874
No 155
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.46 E-value=2.6e-14 Score=126.65 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=70.5
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeee--eeeEEe
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGF--YPVRVL 328 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~G--r~L~V~ 328 (437)
...++|||+|||..+|+++|+++|++||.|..+++..++.+ ++|||||+|.+.++|.+|++ |+|..+.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 45689999999999999999999999999999999988744 58999999999999999999 99999977 999998
Q ss_pred cc
Q 013726 329 PS 330 (437)
Q Consensus 329 ~s 330 (437)
++
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 156
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=8.8e-14 Score=113.96 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=68.0
Q ss_pred ccCCcEEEEecCCc-cchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~-~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
....++|||+|||+ .+|+++|+++|++||.|.+|++. +|||||+|.+.++|.+|++ |+|..+.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 34678999999998 99999999999999999999994 5899999999999999999 9999999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
+.
T Consensus 81 ~~ 82 (96)
T 2kvi_A 81 SS 82 (96)
T ss_dssp EC
T ss_pred Cc
Confidence 64
No 157
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=5.4e-14 Score=114.81 Aligned_cols=78 Identities=23% Similarity=0.412 Sum_probs=69.8
Q ss_pred ccCCcEEEEecCCccchHHHHH----HHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEE
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~----~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V 327 (437)
....++|||+|||.++++++|+ ++|++||.|..|++... ..++|||||+|.+.++|.+|++ |+|..++|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3466899999999999999999 99999999999998632 2247899999999999999999 9999999999999
Q ss_pred eccC
Q 013726 328 LPSK 331 (437)
Q Consensus 328 ~~s~ 331 (437)
.+++
T Consensus 84 ~~a~ 87 (97)
T 1nu4_A 84 QYAK 87 (97)
T ss_dssp EECS
T ss_pred EEcc
Confidence 9986
No 158
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=7.3e-14 Score=113.92 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=67.7
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
+...++|||+|||+++|+++|+++|++||.|..+ .....++|||||+|.+.++|.+|+. |+|..++|+.|.|.++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 3456899999999999999999999999988776 2333468999999999999999999 99999999999999975
No 159
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.45 E-value=4.8e-14 Score=114.93 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=62.9
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCC-ceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhc-Cceec-c-Cchhhh
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHT-EFYIL-H-NPSIAW 426 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G-~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~-~~~~~-~-~~~i~~ 426 (437)
+++|||+|||+++|+++|+++|++| | +|.+|+|++| ++.++|||||+|.+.++|.+|+... +.+.+ + ...|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~-G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH-GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH-TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh-CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 3799999999999999999999996 9 8999999987 5789999999999999999998754 44322 2 224667
Q ss_pred hhh
Q 013726 427 LEE 429 (437)
Q Consensus 427 ~~~ 429 (437)
|.+
T Consensus 80 a~~ 82 (91)
T 2lxi_A 80 SDP 82 (91)
T ss_dssp CCS
T ss_pred cCC
Confidence 654
No 160
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.45 E-value=9.4e-14 Score=122.85 Aligned_cols=76 Identities=28% Similarity=0.341 Sum_probs=71.2
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
....++|||+|||+++|+++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|+. |+|..++|++|.|.+++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 446789999999999999999999999999999999877 46999999999999999999 99999999999999975
No 161
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.45 E-value=1.6e-13 Score=114.99 Aligned_cols=72 Identities=22% Similarity=0.475 Sum_probs=67.5
Q ss_pred CCcEEEEecCCcc-chHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 255 IRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 255 ~~rtLfVgNLp~~-~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
..++|||+|||++ +|+++|+++|++||.|..|++ ++|||||+|.+.++|.+|++ |++..++|+.|.|.+++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4589999999999 999999999999999999999 35899999999999999998 999999999999999863
No 162
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=120.06 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=68.4
Q ss_pred CCcEEEEecCCccchHHHHH----HHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 255 IRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~----~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
..++|||+|||+.+++++|+ ++|++||.|.+|.+..+ ..++|||||+|.+.++|.+|+. |||..+.|++|.|.+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 46799999999999999876 69999999999988643 3468999999999999999998 999999999999999
Q ss_pred cC
Q 013726 330 SK 331 (437)
Q Consensus 330 s~ 331 (437)
++
T Consensus 107 a~ 108 (127)
T 2a3j_A 107 SE 108 (127)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 163
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.45 E-value=9.2e-14 Score=126.61 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=73.9
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||..+|+++|+++|++||.|..|++..++.+ ++|||||+|.+.++|.+|++ |+|..++|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356789999999999999999999999999999999988644 58999999999999999999 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
+..
T Consensus 191 a~~ 193 (198)
T 2yh0_A 191 ASV 193 (198)
T ss_dssp SCC
T ss_pred CCC
Confidence 863
No 164
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.2e-13 Score=114.75 Aligned_cols=77 Identities=25% Similarity=0.314 Sum_probs=68.6
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCe----eEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I----~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
...++|||+|||+++|+++|+++|+.||.| ..+++. ...++|||||+|.+.++|.+|++ |+|..++|+.|.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 456899999999999999999999999998 555555 33468999999999999999999 99999999999999
Q ss_pred ccCC
Q 013726 329 PSKT 332 (437)
Q Consensus 329 ~s~~ 332 (437)
++..
T Consensus 101 ~a~~ 104 (115)
T 2cpx_A 101 FGKN 104 (115)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9864
No 165
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.45 E-value=2.4e-13 Score=122.42 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=72.8
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||+.+|+++|+++|++||.|..|.++.++.+ ++|||||+|.+.++|.+|+. |+|..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45678999999999999999999999999999999988755 48999999999999999999 9999999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
..
T Consensus 150 ~~ 151 (165)
T 1rk8_A 150 FV 151 (165)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 166
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.44 E-value=1.3e-13 Score=111.20 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=67.7
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
..++|||+|||+++++++|+++|++| .|.+|++. .++|||||+|.+.++|.+|++ |+|..++|++|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 45889999999999999999999999 99999884 457999999999999999999 999999999999999754
No 167
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.44 E-value=3.4e-14 Score=125.42 Aligned_cols=77 Identities=26% Similarity=0.371 Sum_probs=69.4
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeee--eEEe
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYP--VRVL 328 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~--L~V~ 328 (437)
...++|||+|||..+++++|+++|++||.|..+++..++.+ ++|||||+|.+.++|.+|++ |+|..+.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 45688999999999999999999999999999999988744 48999999999999999999 9999999975 7776
Q ss_pred cc
Q 013726 329 PS 330 (437)
Q Consensus 329 ~s 330 (437)
++
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 168
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=114.74 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=61.6
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP 422 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~ 422 (437)
+.++|||+|||+++|+++|+++|++| |.|.+|+|++| +++++|||||+|.+.++|++|+...+...+...
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~-G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr 76 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKY-GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN 76 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc-CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 45799999999999999999999995 99999999988 578999999999999999999987666544443
No 169
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7.1e-13 Score=108.58 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=67.2
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
....++|||+|| ++|+++|+++|++||.|.+|++. .++|||||+|.+.++|.+|+. |+|..++|+.|.|.++.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 345689999996 89999999999999999999984 346899999999999999998 99999999999999986
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 86 ~ 86 (97)
T 1x5p_A 86 K 86 (97)
T ss_dssp S
T ss_pred C
Confidence 4
No 170
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.44 E-value=8.2e-14 Score=121.07 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=69.9
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCee--EEEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV--DCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~--~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|+.| .|. +|+++.|+.. ++|||||+|.+.++|.+|+++++..|+|+.|.|.+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 3456889999999999999999999999 676 8999887764 69999999999999999999888999999999987
Q ss_pred cC
Q 013726 330 SK 331 (437)
Q Consensus 330 s~ 331 (437)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 171
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.3e-13 Score=111.96 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=66.4
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCC-eeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcC-eEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG-TMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~-I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng-~~l~Gr~L~V~~s 330 (437)
...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++ ||| ..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 35689999999999999999999999999 6666663 35899999999999999999 999 9999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
+.
T Consensus 81 ~~ 82 (93)
T 2cqh_A 81 VS 82 (93)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.43 E-value=2e-13 Score=108.96 Aligned_cols=71 Identities=27% Similarity=0.461 Sum_probs=66.2
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcC----C-------CeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeee
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGC----G-------QVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFY 323 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~----G-------~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr 323 (437)
..++|||+|||+++|+++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+.|+|..++|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 46899999999999999999999999 8 8999999765 5899999999999999999999999999
Q ss_pred eeEEec
Q 013726 324 PVRVLP 329 (437)
Q Consensus 324 ~L~V~~ 329 (437)
.|.|..
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 173
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.43 E-value=1.6e-13 Score=130.61 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=71.4
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCC--CeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G--~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.|+.+ ++|||||+|.+.++|.+||+ ||+..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 9999999999755 58999999999999999999 999999999999998
Q ss_pred cC
Q 013726 330 SK 331 (437)
Q Consensus 330 s~ 331 (437)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 174
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.43 E-value=3.5e-14 Score=117.23 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=56.6
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCc--eEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCc
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGE--VYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEF 416 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~--I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~ 416 (437)
..+||||+|||+++|+++|+++|++| |. |.+|++++| ++.++|||||+|.+.++|.+|+...+.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~-G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng 75 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPY-ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQS 75 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTT-CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhh-CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcC
Confidence 44799999999999999999999995 95 678999988 578999999999999999888876544
No 175
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.43 E-value=7.3e-14 Score=115.34 Aligned_cols=78 Identities=19% Similarity=0.388 Sum_probs=71.3
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
+...++|||+|||+++|+++|+++|++||.|.+|++..++.. ++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 345689999999999999999999999999999999998732 58999999999999999999 9999999999998875
No 176
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.43 E-value=1.3e-13 Score=120.53 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=65.4
Q ss_pred EEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhh
Q 013726 298 FAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 376 (437)
Q Consensus 298 faFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~ 376 (437)
++|++|.+...+..|+. ++|....|+. ...... + .......++|||+|||.++|+++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~-----------~---~~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 70 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR-----------P---PPDVEGMTSLKVDNLTYRTSPDTLRRVFEK 70 (135)
T ss_dssp ------------------------------CCSCC-----------S---CSSGGGCCCEEEECCCSSCHHHHHHHHHGG
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCC-----------C---CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 67888888899999998 8877666553 111111 0 011234589999999999999999999999
Q ss_pred cCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 377 VCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 377 f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
| |.|..|+++.+ .+.++|||||+|.+.++|.+|+...+...+... .|.|+.
T Consensus 71 ~-G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 71 Y-GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp G-SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred c-CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 5 99999999987 577999999999999999999986554433332 455554
No 177
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=111.42 Aligned_cols=76 Identities=24% Similarity=0.383 Sum_probs=69.0
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEE-EeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCR-ICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vr-i~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
..++|||+|||+++|+++|+++|++||.|.+|+ ++.++.+ |.|||+|.+.++|.+|+. |+|..++|+.|.|.++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 468899999999999999999999999999995 7777653 449999999999999999 999999999999999863
No 178
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=118.65 Aligned_cols=79 Identities=22% Similarity=0.191 Sum_probs=70.7
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCe----eEEEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEE
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRV 327 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I----~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V 327 (437)
....++|||+|||+++|+++|+++|++||.| ..|+++.++.. ++|||||+|.+.++|.+|++.++..|+|+.|.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 3567899999999999999999999999975 68999887543 589999999999999999999999999999999
Q ss_pred eccC
Q 013726 328 LPSK 331 (437)
Q Consensus 328 ~~s~ 331 (437)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 179
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.43 E-value=2.8e-13 Score=108.45 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=59.9
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCcee
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYI 418 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~ 418 (437)
...++|||+|||+++|+++|+++|++| |.|.+|+++.+ ++.++|||||+|.+.++|.+|+...+..+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~ 77 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKF-GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRL 77 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEE
Confidence 345899999999999999999999995 99999999987 57799999999999999999998765543
No 180
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=4.8e-13 Score=110.27 Aligned_cols=77 Identities=27% Similarity=0.373 Sum_probs=68.2
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEec
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~ 329 (437)
....++|||+|||+++|+++|+++|+.|+ .|+++.++.+ ++|||||+|.+.++|.+|++ |++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999774 5777776644 58999999999999999999 999999999999999
Q ss_pred cCC
Q 013726 330 SKT 332 (437)
Q Consensus 330 s~~ 332 (437)
++.
T Consensus 89 a~~ 91 (102)
T 2fc8_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred ecC
Confidence 864
No 181
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=1.4e-14 Score=122.76 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=73.1
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeE--------EEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEee
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--------CRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLG 321 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~--------vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~ 321 (437)
....++|||+|||.++|+++|+++|++||.|.. |++..++.+ ++|||||+|.+.++|.+|++ |+|..++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 888887654 58999999999999999999 9999999
Q ss_pred eeeeEEeccCC
Q 013726 322 FYPVRVLPSKT 332 (437)
Q Consensus 322 Gr~L~V~~s~~ 332 (437)
|+.|.|.+++.
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999999863
No 182
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.42 E-value=3.7e-13 Score=106.67 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=60.3
Q ss_pred cEEEEEcCCccC------CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 354 RTIYCTNIDKKV------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 354 ~tL~V~NLp~~v------teedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
++|||+|||..+ |+++|+++|++| |.|.++++++++|+++|||||+|.+.++|.+|+...+...+..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~-G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF-GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT-CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc-CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 699999999999 789999999995 9999999997788999999999999999999998777655544
No 183
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=4e-14 Score=116.71 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=68.3
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCC--CCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~--~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
...++|||+|||+++|+++|+++|++||.|.. .++.+.. .++|||||+|.+.++|.+|++|+|..+.|+.|.|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35689999999999999999999999998877 4444433 36899999999999999999999999999999999986
No 184
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.41 E-value=5.2e-14 Score=124.29 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=70.8
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
....++|||+|||+++|+++|+++|++|| |.+|+++.++.. ++|||||+|.+.++|.+||++++..++|+.|.|..+.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 44668999999999999999999999999 679999888753 6999999999999999999999999999999998875
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 122 ~ 122 (139)
T 2hgn_A 122 T 122 (139)
T ss_dssp C
T ss_pred C
Confidence 3
No 185
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.41 E-value=5.4e-13 Score=122.10 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=73.2
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
...++|||+|||+.+++++|+++|++||.|..|.+..++.. ++|||||+|.+.++|.+|++ |+|..++|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45689999999999999999999999999999999988732 58999999999999999999 99999999999999986
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 166 ~ 166 (177)
T 2f3j_A 166 S 166 (177)
T ss_dssp S
T ss_pred C
Confidence 4
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.41 E-value=1.8e-12 Score=118.74 Aligned_cols=76 Identities=32% Similarity=0.317 Sum_probs=70.0
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCC-CeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEee-eeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G-~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~-Gr~L~V~~s 330 (437)
...++|||+|||..+|+++|+++|+.|| .|.+|++..+. +|||||+|.+.++|.+|+. |+|..++ |+.|.|.++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 3578999999999999999999999999 99999997643 5899999999999999999 9999999 999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
+.
T Consensus 195 ~~ 196 (198)
T 1qm9_A 195 KS 196 (198)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 187
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=2.2e-13 Score=116.05 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=67.9
Q ss_pred ccCCcEEEEecCCcc-chHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hc--CeEeeeeeeEEe
Q 013726 253 EIIRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA--GTMLGFYPVRVL 328 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~-~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-ln--g~~l~Gr~L~V~ 328 (437)
....++|||+|||++ +|+++|+++|++||.|.+|++.+. +|||||+|.+.++|.+|++ |+ +..+.|++|.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345789999999998 999999999999999999999743 5899999999999999998 75 466999999999
Q ss_pred ccCC
Q 013726 329 PSKT 332 (437)
Q Consensus 329 ~s~~ 332 (437)
+++.
T Consensus 98 ~a~~ 101 (112)
T 1x4f_A 98 LSEK 101 (112)
T ss_dssp EECS
T ss_pred ECcc
Confidence 9863
No 188
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.41 E-value=7e-13 Score=107.62 Aligned_cols=73 Identities=27% Similarity=0.411 Sum_probs=61.6
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeE--eeeeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTM--LGFYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~--l~Gr~L~V~~s 330 (437)
+....+|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+ +++.. +.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEc
Confidence 456789999999999999999999999999999999875 67999999999999984 44544 45889999887
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
.
T Consensus 82 ~ 82 (89)
T 3d2w_A 82 E 82 (89)
T ss_dssp C
T ss_pred C
Confidence 5
No 189
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.40 E-value=2.4e-13 Score=119.26 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=68.4
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEE--------EEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeee
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDC--------RICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYP 324 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~v--------ri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~ 324 (437)
...++|||+|||+++|+++|+++|+.||.|..| ++.. ...++|||||+|.+.++|.+|+. |||..+.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 356899999999999999999999999998764 3322 23468999999999999999999 9999999999
Q ss_pred eEEeccCC
Q 013726 325 VRVLPSKT 332 (437)
Q Consensus 325 L~V~~s~~ 332 (437)
|.|.+++.
T Consensus 122 l~V~~a~~ 129 (143)
T 3egn_A 122 MVVQFARS 129 (143)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99999864
No 190
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.40 E-value=5.2e-13 Score=120.23 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=64.3
Q ss_pred EEEcCHHHHHHHHH-hcCeEee--eeeeEEeccCCCCCCCCCCC---CC---CChhhhcccccEEEEEcCCccCCHHHHH
Q 013726 301 IEFTDEEGARAALN-LAGTMLG--FYPVRVLPSKTAIAPVNPTF---LP---RTEDEREMCARTIYCTNIDKKVTQADVK 371 (437)
Q Consensus 301 VeF~~~e~A~~Al~-lng~~l~--Gr~L~V~~s~~~~~~~~~~~---~p---r~~~~~~~~~~tL~V~NLp~~vteedLr 371 (437)
.+|.+.++|..|+. +++.... |+.+....+.......-... .+ ..........++|||+|||..+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 68899999999988 8876654 55555544321110000000 00 0001113346799999999999999999
Q ss_pred HHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 372 LFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 372 elF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
++|++| |.|..|.|+.+ ++.++|||||+|.+.++|.+|+...+...+... .|.|+.
T Consensus 91 ~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 91 EKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp HHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred HHhhcC-CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 999995 99999999987 677999999999999999999986555433332 355553
No 191
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.40 E-value=2.9e-13 Score=114.95 Aligned_cols=72 Identities=21% Similarity=0.211 Sum_probs=65.0
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeee-----eEEe
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYP-----VRVL 328 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~-----L~V~ 328 (437)
..++|||+|||+++|+++|+++|++||.|..|.++.+ |||||+|.+.++|.+|++ |||..|+|+. |.|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 4578999999999999999999999999999999866 899999999999999999 9999999998 6666
Q ss_pred ccC
Q 013726 329 PSK 331 (437)
Q Consensus 329 ~s~ 331 (437)
...
T Consensus 90 ~~~ 92 (115)
T 3beg_B 90 VDG 92 (115)
T ss_dssp ECC
T ss_pred cCC
Confidence 544
No 192
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.3e-13 Score=110.88 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=64.9
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCchhhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSIAWLE 428 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~i~~~~ 428 (437)
...++|||+|||.++|+++|+++|++| |.|..|+++.+ ++.++|||||+|.+.++|.+|+...+.+..+...+.|+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTF-GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGG-SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhc-CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecC
Confidence 345899999999999999999999995 99999999987 578999999999999999999986443333333566654
Q ss_pred h
Q 013726 429 E 429 (437)
Q Consensus 429 ~ 429 (437)
.
T Consensus 92 ~ 92 (103)
T 2cqg_A 92 S 92 (103)
T ss_dssp T
T ss_pred C
Confidence 3
No 193
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.39 E-value=9.3e-13 Score=109.07 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=64.9
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCcee-c----cCchh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYI-L----HNPSI 424 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~-~----~~~~i 424 (437)
...++|||+|||.++|+++|+++|++| |.|..|+|+++ .+.++|||||+|.+.++|.+|+...+... . +...+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF-GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456899999999999999999999995 99999999988 67799999999999999999987555432 2 23356
Q ss_pred hhhhh
Q 013726 425 AWLEE 429 (437)
Q Consensus 425 ~~~~~ 429 (437)
.||..
T Consensus 92 ~~a~~ 96 (105)
T 2dnh_A 92 KFADT 96 (105)
T ss_dssp EESCS
T ss_pred EECcc
Confidence 66653
No 194
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.39 E-value=1.1e-12 Score=136.36 Aligned_cols=79 Identities=22% Similarity=0.256 Sum_probs=73.2
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
...++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+ ++|||||+|.+.++|.+||. |||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45589999999999999999999999999999999988654 58999999999999999998 9999999999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 64
No 195
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=104.74 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=62.7
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||.++|+++|+++|++| |.|.+++++++ .+.++|||||+|.+.++|.+|+...+...+... .+.|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35799999999999999999999995 99999999987 677999999999999999999986554433332 35554
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 84 ~ 84 (87)
T 3bs9_A 84 T 84 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 196
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.39 E-value=1.1e-12 Score=103.73 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=62.0
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
.+|||+|||.++|+++|+++|++| |.|.+++++++ .+.++|||||+|.+.++|.+|+...+...++.. .+.|+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 689999999999999999999995 99999999987 577999999999999999999886554433332 355554
No 197
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=8.5e-13 Score=109.07 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=65.5
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
....++|||+|||.++|+++|+++|++| |.|..|+++.+.+.++|||||+|.+.++|.+|+...+...++.. .+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPF-GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTT-SCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3456899999999999999999999995 99999999998778999999999999999999986554433332 35555
Q ss_pred hh
Q 013726 428 EE 429 (437)
Q Consensus 428 ~~ 429 (437)
..
T Consensus 91 ~~ 92 (103)
T 2d9p_A 91 QR 92 (103)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 198
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.39 E-value=1e-12 Score=106.06 Aligned_cols=77 Identities=16% Similarity=0.047 Sum_probs=64.3
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccC--chhhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHN--PSIAWLEE 429 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~--~~i~~~~~ 429 (437)
..++|||+|||.++|+++|+++|++| |.|..+++.++.+.++|||||+|.+.++|.+|+...+...+.. ..+.|+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNEC-GHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTT-SCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 45899999999999999999999995 9999999999888899999999999999999988655433322 24555543
No 199
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=106.14 Aligned_cols=77 Identities=16% Similarity=0.263 Sum_probs=64.0
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||.++|+++|+++|++| |.|..|+++++ .+.++|||||+|.+.++|.+|+...+...++.. .|.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPF-GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45899999999999999999999995 99999999988 577999999999999999999885554433332 45665
Q ss_pred hh
Q 013726 428 EE 429 (437)
Q Consensus 428 ~~ 429 (437)
.+
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 200
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.4e-13 Score=107.47 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=59.9
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
..++|||+|||.++++++|+++|++| |.|.+++++.+ .+.++|||||+|.+.++|.+|+...+...++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPY-GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTT-SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 45899999999999999999999995 99999999987 5779999999999999999998866554333
No 201
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=5.1e-13 Score=114.07 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=67.2
Q ss_pred cCCcEEEE--ecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEe-----eeeee
Q 013726 254 IIRRTVYV--SDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML-----GFYPV 325 (437)
Q Consensus 254 ~~~rtLfV--gNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l-----~Gr~L 325 (437)
...++||| +||++++|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|.+|++ |||..+ .|++|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 45688999 67999999999999999999999998864 36899999999999999999 999998 79999
Q ss_pred EEeccC
Q 013726 326 RVLPSK 331 (437)
Q Consensus 326 ~V~~s~ 331 (437)
.|.++.
T Consensus 99 ~v~~a~ 104 (114)
T 2cq2_A 99 YLNFVE 104 (114)
T ss_dssp EEEEES
T ss_pred EEEecc
Confidence 999875
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=2e-12 Score=122.01 Aligned_cols=76 Identities=32% Similarity=0.308 Sum_probs=69.9
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCC-CeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEee-eeeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G-~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~-Gr~L~V~~s 330 (437)
...++|||+|||..+|+++|+++|++|| .|..|++..+ ++|||||+|.+.++|.+|++ |+|..++ |+.|.|.++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 4578999999999999999999999999 9999999654 25899999999999999999 9999999 999999998
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
+.
T Consensus 226 ~~ 227 (229)
T 2adc_A 226 KS 227 (229)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 203
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.6e-12 Score=107.46 Aligned_cols=78 Identities=12% Similarity=0.181 Sum_probs=64.6
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
...++|||+|||.++|+++|+++|++| |.|..|+|+.+.+.++|||||+|.+.++|.+|+...+...+... .+.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQF-GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGT-SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 356899999999999999999999995 99999999999767999999999999999999986554333332 355554
Q ss_pred h
Q 013726 429 E 429 (437)
Q Consensus 429 ~ 429 (437)
.
T Consensus 92 ~ 92 (103)
T 2cq3_A 92 A 92 (103)
T ss_dssp S
T ss_pred c
Confidence 3
No 204
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1.3e-12 Score=107.12 Aligned_cols=76 Identities=13% Similarity=0.238 Sum_probs=64.2
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||.++|+++|+++|++| |.|..|+++++ .+.++|||||+|.+.++|.+|+...+...++.. .+.|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAY-GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45899999999999999999999995 99999999988 567999999999999999999977666544443 34454
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 86 ~ 86 (99)
T 1whw_A 86 T 86 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 205
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=106.15 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=62.7
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||..+++++|+++|++| |.|.+|+++++ .+.++|||||+|.+.++|.+|+...+...++.. .+.|+
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQA-GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 45899999999999999999999995 99999999987 567999999999999999999986554433332 34444
No 206
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.38 E-value=8.8e-13 Score=104.78 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=59.8
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..++|||+|||.++++++|+++|++| |.|..+.++++ .+.++|||||+|.+.++|.+|+...+...++.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGG-SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhcc-CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45899999999999999999999995 99999999887 56699999999999999999986655544433
No 207
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.4e-12 Score=105.79 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=63.6
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~ 426 (437)
...++|||+|||.++|+++|+++|++| |.|..|.++.+ .+.++|||||+|.+.++|.+|+...+...+... .+.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKY-GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTT-SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 456899999999999999999999995 99999999987 467999999999999999999987665444333 3444
Q ss_pred h
Q 013726 427 L 427 (437)
Q Consensus 427 ~ 427 (437)
+
T Consensus 92 a 92 (95)
T 2cqc_A 92 P 92 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 208
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.37 E-value=6.1e-13 Score=110.92 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=66.8
Q ss_pred cccEEEEEcCCccC------CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccC---c
Q 013726 352 CARTIYCTNIDKKV------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHN---P 422 (437)
Q Consensus 352 ~~~tL~V~NLp~~v------teedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~---~ 422 (437)
..++|||+|||..+ |+++|+++|++| |.|.+|.+++.+|.++|||||+|.+.++|.+|+...++..++. .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~-G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF-GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG-SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC-CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 45899999999999 789999999995 9999999997788999999999999999999999776654443 2
Q ss_pred hhhhhhhh
Q 013726 423 SIAWLEEF 430 (437)
Q Consensus 423 ~i~~~~~~ 430 (437)
.+.||.++
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 57777654
No 209
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.4e-12 Score=107.84 Aligned_cols=78 Identities=17% Similarity=0.297 Sum_probs=65.3
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
...++|||+|||..+|+++|+++|++| |.|.+|+++++.+.++|||||+|.+.++|.+|+...+...+... .|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHH-SCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhc-CCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 345899999999999999999999996 99999999999777899999999999999999986555443333 355654
Q ss_pred h
Q 013726 429 E 429 (437)
Q Consensus 429 ~ 429 (437)
.
T Consensus 92 ~ 92 (103)
T 2cqi_A 92 T 92 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 210
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.37 E-value=2.1e-12 Score=112.77 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=67.5
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceE-EEEEEcCHHHHHHHHH-hcCeEeee--eeeEEeccCC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF-AFIEFTDEEGARAALN-LAGTMLGF--YPVRVLPSKT 332 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~Gf-aFVeF~~~e~A~~Al~-lng~~l~G--r~L~V~~s~~ 332 (437)
-.|||+||++.+|+++|+++|++||.|.+|++..+. +|| |||+|.+.++|.+|++ |||..+.| +.|+|.+++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 468899999999999999999999999999987643 577 9999999999999999 99999988 8999999874
Q ss_pred C
Q 013726 333 A 333 (437)
Q Consensus 333 ~ 333 (437)
.
T Consensus 106 ~ 106 (130)
T 3zzy_A 106 T 106 (130)
T ss_dssp S
T ss_pred C
Confidence 3
No 211
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.1e-12 Score=110.74 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=66.1
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc-hhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP-SIAWL 427 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~-~i~~~ 427 (437)
...++|||+|||.++|+++|+++|++| |.|..|+|+++ ++.++|||||+|.+.++|++|+...+..+...+ .|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGF-GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTT-SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 456899999999999999999999995 99999999987 577999999999999999999988777544443 46666
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 94 ~ 94 (116)
T 2cqd_A 94 Y 94 (116)
T ss_dssp T
T ss_pred c
Confidence 4
No 212
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.37 E-value=5e-13 Score=103.95 Aligned_cols=64 Identities=23% Similarity=0.240 Sum_probs=56.5
Q ss_pred EEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 355 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 355 tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
+|||+|||.++|+++|+++|++| |.|..++++.+ .+.++|||||+|.+.++|++|+......+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~ 66 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF-GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEIN 66 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT-SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEEC
Confidence 58999999999999999999995 99999999987 577999999999999999999885444333
No 213
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=2.4e-12 Score=111.48 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=64.6
Q ss_pred EEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceE-EEEEEcCHHHHHHHHH-hcCeEeee--eeeEEeccCC
Q 013726 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF-AFIEFTDEEGARAALN-LAGTMLGF--YPVRVLPSKT 332 (437)
Q Consensus 258 tLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~Gf-aFVeF~~~e~A~~Al~-lng~~l~G--r~L~V~~s~~ 332 (437)
.|||+||++.+|+++|+++|++||.|.+|++... .|| |||+|.+.++|.+|++ |||..|.| +.|+|.+++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 4789999999999999999999999999999653 286 9999999999999999 99999987 6899999864
No 214
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.37 E-value=5.3e-13 Score=107.96 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=56.8
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCC--ceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G--~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
.+|||+|||+++|+++|+++|++| | .|.+++++.+ +|.++|||||+|.+.++|.+|+...+...++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~-G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL-GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG 72 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT-TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh-CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 589999999999999999999995 9 9999999987 67899999999999999999987666544433
No 215
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.36 E-value=6.9e-13 Score=110.05 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=64.7
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCcee-----ccCch
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYI-----LHNPS 423 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~-----~~~~~ 423 (437)
...++|||+|||.++|+++|+++|++| |.|..|+++++ ++.++|||||+|.+.++|.+|+...+... .+...
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEF-GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHH-SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 345899999999999999999999996 99999999987 57799999999999999999987655532 23335
Q ss_pred hhhhhh
Q 013726 424 IAWLEE 429 (437)
Q Consensus 424 i~~~~~ 429 (437)
+.|+..
T Consensus 90 v~~a~~ 95 (106)
T 2dgp_A 90 VKPADS 95 (106)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 666654
No 216
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=106.18 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=63.2
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc-hhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP-SIAWLE 428 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~-~i~~~~ 428 (437)
..++|||+|||.++|+++|+++|++| |.|..|+++++ .+.++|||||+|.+.++|.+|+......+.+.+ .+.|+.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKF-GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSS-SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45899999999999999999999995 99999999987 567999999999999999999984433333332 355554
Q ss_pred h
Q 013726 429 E 429 (437)
Q Consensus 429 ~ 429 (437)
.
T Consensus 88 ~ 88 (99)
T 2dgs_A 88 P 88 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 217
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.8e-12 Score=106.52 Aligned_cols=77 Identities=14% Similarity=0.246 Sum_probs=64.0
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
...++|||+|||.++|+++|+++|++| |.|..|+++.+ .+.++|||||+|.+.++|.+|+...+...+... .+.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAH-GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345899999999999999999999995 99999999988 577999999999999999999976555444332 34554
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 94 ~ 94 (100)
T 2do4_A 94 N 94 (100)
T ss_dssp C
T ss_pred C
Confidence 3
No 218
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.36 E-value=1.4e-12 Score=106.51 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=62.4
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
+++|||+|||.++++++|+++|++| |.|.+|++..+ .+.++|||||+|.+.++|.+|+...+...+... .+.|+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV-GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4799999999999999999999995 99999999988 577999999999999999999976555433332 344543
No 219
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.5e-12 Score=107.49 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=64.7
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~ 426 (437)
...++|||+|||.++|+++|+++|++| |.|..|.++++ .+.++|||||+|.+.++|.+|+...+...+... .|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPF-GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTT-CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 356899999999999999999999995 99999999987 678999999999999999999986665444333 3555
Q ss_pred hh
Q 013726 427 LE 428 (437)
Q Consensus 427 ~~ 428 (437)
+.
T Consensus 92 a~ 93 (103)
T 2cq0_A 92 AK 93 (103)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 220
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.1e-12 Score=106.76 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=64.5
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhh-cCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCcee-c--cCchhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFES-VCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYI-L--HNPSIAW 426 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~-f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~-~--~~~~i~~ 426 (437)
..++|||+|||.++|+++|+++|++ | |.|.+|+|+++ .+.++|||||+|.+.++|.+|+...+... + +...|.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~-G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVY-PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHC-TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhC-CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 4589999999999999999999999 7 99999999988 67799999999999999999998666533 2 2224666
Q ss_pred hh
Q 013726 427 LE 428 (437)
Q Consensus 427 ~~ 428 (437)
+.
T Consensus 87 a~ 88 (104)
T 2dhg_A 87 AI 88 (104)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 221
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.36 E-value=2.1e-12 Score=103.44 Aligned_cols=75 Identities=24% Similarity=0.345 Sum_probs=62.2
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||.++|+++|+++|++| |.|.+++++.+ ++.++|||||+|.+.++|++|+ ..+...++.. .+.|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGC-GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGG-CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 35899999999999999999999995 99999999987 6779999999999999999999 5444433332 35555
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 83 ~ 83 (89)
T 3ucg_A 83 R 83 (89)
T ss_dssp T
T ss_pred c
Confidence 4
No 222
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=8.3e-13 Score=111.16 Aligned_cols=72 Identities=21% Similarity=0.156 Sum_probs=58.8
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcC---cee-ccCchhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTE---FYI-LHNPSIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~---~~~-~~~~~i~~~ 427 (437)
..++|||+|||+++|+++|+++|++| |.|.+|+|+++ +|||||+|++.++|.+|+...+ ..+ .....+.||
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~f-G~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHH-CCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 45899999999999999999999996 99999999986 6799999999999999987432 222 223246666
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 90 ~ 90 (105)
T 1sjq_A 90 N 90 (105)
T ss_dssp S
T ss_pred C
Confidence 4
No 223
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.36 E-value=2.6e-12 Score=108.27 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=64.4
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~ 426 (437)
...++|||+|||..+|+++|+++|++| |.|..|+|+++ .+.++|||||+|.+.++|.+|+...+...+... .|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 356899999999999999999999995 99999999987 677999999999999999999976555433332 4566
Q ss_pred hh
Q 013726 427 LE 428 (437)
Q Consensus 427 ~~ 428 (437)
+.
T Consensus 92 a~ 93 (115)
T 2dgo_A 92 AT 93 (115)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 224
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=8.2e-13 Score=106.16 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=63.3
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEeccC
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s~ 331 (437)
..++|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 4689999999999999999999999999999999865 579999999999999865432 345688999999875
No 225
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.36 E-value=2.9e-12 Score=118.81 Aligned_cols=120 Identities=15% Similarity=0.164 Sum_probs=86.6
Q ss_pred CHHHHHHHHH-h--cCeEeeeeeeEEeccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHhhhcCCce
Q 013726 305 DEEGARAALN-L--AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEV 381 (437)
Q Consensus 305 ~~e~A~~Al~-l--ng~~l~Gr~L~V~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF~~f~G~I 381 (437)
+.+.+..|++ . ....+.+....|..... .+.+. ...........++|||+|||+++|+++|+++|++| |.|
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~---~p~p~--~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G~v 136 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPS---KPLPE--VTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK-GQV 136 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTT---SCCCC--CCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTS-CCE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEeccc---CCCcc--cchhhhhccccCEEEecCCCCcCCHHHHHHHHhcC-CCE
Confidence 5677888888 5 55566666666655421 01111 00111123356899999999999999999999995 999
Q ss_pred EEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc-hhhhhhhh
Q 013726 382 YRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP-SIAWLEEF 430 (437)
Q Consensus 382 ~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~-~i~~~~~~ 430 (437)
.+|+++++ .+.++|||||+|.+.++|.+|+...+..+.+.+ .|.|+.++
T Consensus 137 ~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 137 LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp EEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred EEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 99999988 667999999999999999999987665444443 46666654
No 226
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.7e-12 Score=107.65 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=64.2
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc---CCCcceEEEEEeCCHHHHHHHHhhc-Cceec-c-Cchh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD---YHHSTRIAFVEFVMVIASSTLFIHT-EFYIL-H-NPSI 424 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd---~g~srGfAFVeF~s~e~A~kal~~~-~~~~~-~-~~~i 424 (437)
...++|||+|||..+|+++|+++|++| |.|..|+++++ .+.++|||||+|.+.++|.+|+... +...+ + ...+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTF-GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHcc-CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 356899999999999999999999995 99999999987 6779999999999999999998865 33322 2 2246
Q ss_pred hhhhh
Q 013726 425 AWLEE 429 (437)
Q Consensus 425 ~~~~~ 429 (437)
.|+..
T Consensus 92 ~~a~~ 96 (107)
T 2cph_A 92 EWADS 96 (107)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 66643
No 227
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.35 E-value=1.2e-12 Score=121.38 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=72.3
Q ss_pred hccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEecc
Q 013726 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (437)
Q Consensus 252 ~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~s 330 (437)
.+...++|||+|||+++|+++|+++|++||.|.+|+++.+..+ ++|||||+|.+.++|.+|+.+.+..++|++|.|.++
T Consensus 105 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 105 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 184 (193)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEET
T ss_pred hccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEh
Confidence 3445689999999999999999999999999999999987654 589999999999999999995556999999999987
Q ss_pred CC
Q 013726 331 KT 332 (437)
Q Consensus 331 ~~ 332 (437)
..
T Consensus 185 ~~ 186 (193)
T 2voo_A 185 DD 186 (193)
T ss_dssp TT
T ss_pred HH
Confidence 53
No 228
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.7e-12 Score=106.33 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=60.6
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceE-EEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~-~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
..++|||+|||.++|+++|+++|++| |.|. +|+++++ ++.++|||||+|.+.++|++|+...+...+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATM-GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHT-TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHh-CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 45899999999999999999999995 9999 9999987 5779999999999999999999876654443
No 229
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.35 E-value=7.2e-13 Score=109.61 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=64.8
Q ss_pred cccEEEEEcCCc------cCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceecc---
Q 013726 352 CARTIYCTNIDK------KVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILH--- 420 (437)
Q Consensus 352 ~~~tL~V~NLp~------~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~--- 420 (437)
..++|||+|||. ++++++|+++|++| |.|.+|+|+++ +++++|||||+|.+.++|.+|+...+...+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~-G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA-GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT-SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc-CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 358999999999 99999999999995 99999999988 4789999999999999999998765554433
Q ss_pred Cchhhhhhh
Q 013726 421 NPSIAWLEE 429 (437)
Q Consensus 421 ~~~i~~~~~ 429 (437)
...+.||.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 235666654
No 230
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.8e-12 Score=107.38 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=65.5
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC--chhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN--PSIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~--~~i~~ 426 (437)
...++|||+|||.++|+++|+++|++| |.|..|+++.+ .+.++|||||+|.+.++|.+|+...+...+.. ..+.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQA-GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345899999999999999999999995 99999999987 57799999999999999999998655433332 24666
Q ss_pred hhhh
Q 013726 427 LEEF 430 (437)
Q Consensus 427 ~~~~ 430 (437)
+..-
T Consensus 92 a~~~ 95 (105)
T 1x5u_A 92 ASAH 95 (105)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 6543
No 231
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=1.8e-12 Score=108.30 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=58.6
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcC
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTE 415 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~ 415 (437)
...++|||+|||.++|+++|+++|++| |.|..|+|+++ .+.++|||||+|.+.++|.+|+...+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQF-GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 346899999999999999999999995 99999999988 56799999999999999999998765
No 232
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.35 E-value=7e-12 Score=121.13 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=70.4
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEee-eeeeEEecc
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLPS 330 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~-Gr~L~V~~s 330 (437)
....++|||+|||..+|+++|+++|++||.|.+|++..++ +|||||+|.+.++|.+|++ |||..++ |+.|+|.++
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 3456899999999999999999999999999999998665 4899999999999999999 9999999 999999987
Q ss_pred C
Q 013726 331 K 331 (437)
Q Consensus 331 ~ 331 (437)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 5
No 233
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.2e-12 Score=106.49 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=64.3
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEE-EEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRL-RLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAW 426 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v-~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~ 426 (437)
..++|||+|||.++|+++|+++|++| |.|..+ +++++ .+.++|||||+|.+.++|.+|+...+...++.. .+.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF-GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT-SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45899999999999999999999995 999999 99987 677999999999999999999986665444333 3555
Q ss_pred hhh
Q 013726 427 LEE 429 (437)
Q Consensus 427 ~~~ 429 (437)
+..
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 543
No 234
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.35 E-value=1.4e-12 Score=118.06 Aligned_cols=75 Identities=21% Similarity=0.181 Sum_probs=68.0
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeee--eeeEEeccCCC
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF--YPVRVLPSKTA 333 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~G--r~L~V~~s~~~ 333 (437)
.+|||+||++.+|+++|+++|++||.|.+|++..+. ++|||||+|.+.++|.+|++ |||..|.| +.|+|.+++..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 569999999999999999999999999999986543 46899999999999999999 99999965 99999998743
No 235
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.9e-12 Score=106.21 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=63.2
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC--chhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN--PSIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~--~~i~~ 426 (437)
...++|||+|||.++|+++|+++|++| |.|.+|.++.+ ++.++|||||+|.+.++|.+|+...+...+.. ..+.|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEY-GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc-CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 345899999999999999999999995 99999999987 57799999999999999999988544433222 24555
Q ss_pred hh
Q 013726 427 LE 428 (437)
Q Consensus 427 ~~ 428 (437)
|.
T Consensus 100 a~ 101 (106)
T 1p27_B 100 CF 101 (106)
T ss_dssp SE
T ss_pred ec
Confidence 54
No 236
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.7e-12 Score=106.86 Aligned_cols=77 Identities=9% Similarity=0.178 Sum_probs=63.6
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||.++|+++|+++|++| |.|..|+++++ .+.++|||||+|.+.++|.+|+...+...+... .|.|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKY-GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHH-SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45899999999999999999999996 99999999987 567999999999999999999866554333322 45565
Q ss_pred hh
Q 013726 428 EE 429 (437)
Q Consensus 428 ~~ 429 (437)
..
T Consensus 90 ~~ 91 (102)
T 1x5s_A 90 GK 91 (102)
T ss_dssp EC
T ss_pred CC
Confidence 43
No 237
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=104.84 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=60.9
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..++|||+|||.++++++|+++|++| |.|..|+++++ .+.++|||||+|.+.++|.+|+...+...+..
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKY-GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTT-SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 45899999999999999999999995 99999999987 46799999999999999999997766654444
No 238
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=1.8e-12 Score=105.94 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=63.0
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccC---C--CcceEEEEEeCCHHHHHHHHhhcCceeccCc--hh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---H--HSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SI 424 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~---g--~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i 424 (437)
..++|||+|||.++|+++|+++|++| |.|..|++..+. | .++|||||+|.+.++|.+|+...+...+... .+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV-GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45899999999999999999999995 999999999873 3 6899999999999999999987655444333 35
Q ss_pred hhhh
Q 013726 425 AWLE 428 (437)
Q Consensus 425 ~~~~ 428 (437)
.|+.
T Consensus 83 ~~a~ 86 (98)
T 2cpf_A 83 RISE 86 (98)
T ss_dssp ECSS
T ss_pred EEcc
Confidence 5554
No 239
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.3e-12 Score=107.16 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=59.8
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEE-EEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYR-LRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~-v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..++|||+|||+++|+++|+++|++| |.|.. |+|+.+ +++++|||||+|.+.++|.+|+......+.+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr 84 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGL-EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 84 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTC-CEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCc
Confidence 45899999999999999999999995 99987 888887 67899999999999999999998844444333
No 240
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.34 E-value=2.8e-12 Score=106.51 Aligned_cols=70 Identities=19% Similarity=0.156 Sum_probs=61.5
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
...++|||+|||..+|+++|+++|++| |.|.+|.++.+ .+.++|||||+|.+.++|.+|+...+...++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 97 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 97 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 356899999999999999999999995 99999999988 67799999999999999999998655544443
No 241
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.34 E-value=3.9e-12 Score=107.65 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=62.0
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
....++|||+|||.++|+++|+++|++| |.|.+|+++++ .+.++|||||+|.+.++|.+|+...+...++.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPF-GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTS-CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3456899999999999999999999995 99999999987 56799999999999999999998766554444
No 242
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.34 E-value=1.9e-12 Score=111.27 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=67.4
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
....++|||+|| ++|+++|+++|++||.|.+|++. .++|||||+|.+.++|.+|+. |+|..++|+.|.|.++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 456789999996 69999999999999999999996 356899999999999999998 99999999999999986
Q ss_pred C
Q 013726 332 T 332 (437)
Q Consensus 332 ~ 332 (437)
.
T Consensus 110 ~ 110 (121)
T 2bz2_A 110 K 110 (121)
T ss_dssp S
T ss_pred C
Confidence 3
No 243
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.34 E-value=3.5e-13 Score=139.99 Aligned_cols=78 Identities=13% Similarity=0.217 Sum_probs=65.6
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~ 426 (437)
...++|||+|||+.+|+++|.++|++| |.|..|.|+.+ ++.++|||||+|.+.++|.+|+..++...+... .|.|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVY-GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc-CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345899999999999999999999995 99999999987 677999999999999999999977665444433 4666
Q ss_pred hhh
Q 013726 427 LEE 429 (437)
Q Consensus 427 ~~~ 429 (437)
+..
T Consensus 179 a~~ 181 (437)
T 3pgw_S 179 ERG 181 (437)
T ss_pred eCC
Confidence 653
No 244
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.33 E-value=1.4e-12 Score=109.65 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=62.3
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc-hhhh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP-SIAW 426 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~-~i~~ 426 (437)
....++|||+|||.++|+++|+++|++| |.|.+|+++++ +|.++|||||+|.+.++|.+|+...+..+.+.. .+.|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQF-GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcc-CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 3456899999999999999999999995 99999999988 478999999999999999999988764443332 2444
Q ss_pred h
Q 013726 427 L 427 (437)
Q Consensus 427 ~ 427 (437)
+
T Consensus 101 a 101 (109)
T 2rs2_A 101 A 101 (109)
T ss_dssp C
T ss_pred c
Confidence 4
No 245
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.3e-12 Score=109.66 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=61.6
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
....++|||+|||.++|+++|+++|++| |.|.+|++.++.+.++|||||+|.+.++|.+|+...+...++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF-GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT-CCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc-CCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4456899999999999999999999995 999999999997779999999999999999999865554333
No 246
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.33 E-value=5.7e-13 Score=103.51 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=57.0
Q ss_pred EEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 355 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 355 tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
+|||+|||.++|+++|+++|++| |.|..+.++++ ++.++|||||+|.+.++|.+|+...+..+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~ 66 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF-GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 66 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH-SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeEC
Confidence 58999999999999999999996 99999999987 467999999999999999999987544433
No 247
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1e-12 Score=102.49 Aligned_cols=63 Identities=17% Similarity=0.313 Sum_probs=57.6
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCce
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFY 417 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~ 417 (437)
++|||+|||.++|+++|+++|++| |.|..++++++ .+.++|||||+|.+.++|.+|+...+..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~ 65 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF-GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHE 65 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT-SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCc
Confidence 479999999999999999999995 99999999987 4779999999999999999999887733
No 248
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.33 E-value=3.8e-12 Score=106.86 Aligned_cols=78 Identities=15% Similarity=0.254 Sum_probs=63.8
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~ 426 (437)
...++|||+|||..+|+++|+++|++| |.|..|+++++ .+.++|||||+|.+.++|.+|+...+...+... .|.|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTT-SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999995 99999999987 567999999999999999999875554333322 3555
Q ss_pred hhh
Q 013726 427 LEE 429 (437)
Q Consensus 427 ~~~ 429 (437)
+.+
T Consensus 103 a~~ 105 (108)
T 2jrs_A 103 VTE 105 (108)
T ss_dssp SCS
T ss_pred ccc
Confidence 543
No 249
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3.7e-12 Score=107.59 Aligned_cols=77 Identities=12% Similarity=0.178 Sum_probs=63.8
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIA 425 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~ 425 (437)
....++|||+|||.++|+++|+++|++| |.|..|+|+.+ .+.++|||||+|.+.++|.+|+.. +...++.. .|.
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQW-GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSS-CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 3346899999999999999999999995 99999999987 477999999999999999999988 44333332 355
Q ss_pred hhh
Q 013726 426 WLE 428 (437)
Q Consensus 426 ~~~ 428 (437)
|+.
T Consensus 102 ~a~ 104 (116)
T 1x4b_A 102 RAV 104 (116)
T ss_dssp CCS
T ss_pred ECC
Confidence 554
No 250
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.33 E-value=2.8e-12 Score=108.12 Aligned_cols=77 Identities=10% Similarity=0.174 Sum_probs=64.2
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~ 426 (437)
...++|||+|||.++|+++|+++|++| |.|..|+|+++ .+.++|||||+|.+.++|.+|+...+...+... .|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPF-GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGG-SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345899999999999999999999995 99999999987 577999999999999999999976555443333 3555
Q ss_pred hh
Q 013726 427 LE 428 (437)
Q Consensus 427 ~~ 428 (437)
+.
T Consensus 102 a~ 103 (115)
T 2cpz_A 102 KR 103 (115)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 251
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=110.36 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=61.1
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCC-----CCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEE
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~-----~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V 327 (437)
...++|||+|||+++|+++|+++|++||.|. +.++.++. .++|||||+|.+.++|.+|++ |+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3568999999999999999999999999999 88877654 358999999999999999998 73 355655555
Q ss_pred ec
Q 013726 328 LP 329 (437)
Q Consensus 328 ~~ 329 (437)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 252
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.7e-12 Score=107.28 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=63.2
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||.++|+++|+++|++| |.|..|.++.+ ++.++|||||+|.+.++|.+|+...+...+... .+.|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKY-GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 45899999999999999999999995 99999999987 477999999999999999999885544333332 45555
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 91 ~ 91 (103)
T 2dnm_A 91 R 91 (103)
T ss_dssp S
T ss_pred C
Confidence 4
No 253
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.33 E-value=3.4e-12 Score=104.78 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=58.6
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEE--------EEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCcee
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYR--------LRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYI 418 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~--------v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~ 418 (437)
..++|||+|||.++|+++|+++|++| |.|.. ++++.+ .+.++|||||+|.+.++|++|+...+...
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQI-GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTT-SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45899999999999999999999995 99999 999887 57899999999999999999987555443
No 254
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.2e-12 Score=106.80 Aligned_cols=68 Identities=15% Similarity=0.253 Sum_probs=60.8
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
...++|||+|||.++|+++|+++|++| |.|.+|+|+++ .+.++|||||+|.+.++|.+|+...+...+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 91 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPF-GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 91 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTT-SCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 356899999999999999999999995 99999999988 677999999999999999999986666544
No 255
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3.4e-12 Score=107.23 Aligned_cols=76 Identities=25% Similarity=0.261 Sum_probs=63.3
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
..++|||+|||.++|+++|+++|++| |.|..|+|+.+ .+.++|||||+|.+.++|.+|+...+...+... .|.|+.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMA-GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45899999999999999999999995 99999999987 677999999999999999999886555433332 355543
No 256
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.32 E-value=3.5e-12 Score=108.46 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=64.6
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
..++|||+|||.++|+++|+++|++| |.|.+|.++.+ .+.++|||||+|.+.++|++|+...+...+... .|.|+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKH-GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTS-SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45899999999999999999999995 99999999998 677999999999999999999986555433332 466665
Q ss_pred h
Q 013726 429 E 429 (437)
Q Consensus 429 ~ 429 (437)
.
T Consensus 85 ~ 85 (116)
T 2fy1_A 85 K 85 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 257
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2e-12 Score=107.13 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=63.6
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~ 426 (437)
...++|||+|||.++|+++|+++|++| |.|..|+++++ .+.++|||||+|.+.++|.+|+.. +...+... .|.|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQY-GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 345899999999999999999999995 99999999987 567999999999999999999988 54444333 3555
Q ss_pred hh
Q 013726 427 LE 428 (437)
Q Consensus 427 ~~ 428 (437)
+.
T Consensus 92 a~ 93 (105)
T 2dh8_A 92 CT 93 (105)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 258
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.32 E-value=1.1e-12 Score=106.34 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=52.0
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIH 413 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~ 413 (437)
..++|||+|||+++|+++|+++|++| |.|.+|+|+++ ++|||||+|.+.++|.++...
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~-G~i~~v~i~~~---srGfaFV~F~~~~~A~~~~~~ 67 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQY-GEVVDVFIPKP---FRAFAFVTFADDKVAQSLCGE 67 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECCSS---CCSEEEEEESCHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEeeC---CCCEEEEEECCHHHHHHHcCC
Confidence 45899999999999999999999995 99999999985 789999999999999876543
No 259
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.8e-12 Score=105.53 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=61.8
Q ss_pred cEEEEecCCccchHHH----HHHHHhcC-CCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 257 RTVYVSDIDQQVTEEQ----LAALFVGC-GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 257 rtLfVgNLp~~~tee~----L~~~F~~~-G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
++|||+|||+.+++++ |+++|++| |.|.+|. .|+|||.|.+.++|.+|++ |+|..+.|++|+|.++
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 4499999999999988 55899999 5999881 2999999999999999999 9999999999999998
Q ss_pred CCC
Q 013726 331 KTA 333 (437)
Q Consensus 331 ~~~ 333 (437)
+..
T Consensus 82 ~~~ 84 (96)
T 2diu_A 82 PKN 84 (96)
T ss_dssp CCS
T ss_pred CCC
Confidence 743
No 260
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.5e-12 Score=107.30 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=64.1
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||.++|+++|+++|++| |.|..|+++++ .+.++|||||+|.+.++|.+|+...+...+... .+.|+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTT-SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45899999999999999999999995 99999999887 567999999999999999999976555444333 35555
Q ss_pred hh
Q 013726 428 EE 429 (437)
Q Consensus 428 ~~ 429 (437)
..
T Consensus 90 ~~ 91 (102)
T 2cqb_A 90 KP 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 261
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.32 E-value=4.1e-12 Score=106.18 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=63.7
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~ 426 (437)
...++|||+|||..+|+++|+++|++| |.|..|.++.+ .+.++|||||+|.+.++|.+|+...+...+... .+.|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 346899999999999999999999995 99999999887 577999999999999999999986555433332 3555
Q ss_pred hh
Q 013726 427 LE 428 (437)
Q Consensus 427 ~~ 428 (437)
+.
T Consensus 103 a~ 104 (110)
T 1oo0_B 103 CF 104 (110)
T ss_dssp SE
T ss_pred cc
Confidence 54
No 262
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.8e-12 Score=109.58 Aligned_cols=69 Identities=19% Similarity=0.058 Sum_probs=60.0
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCce-EEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEV-YRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I-~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
...++|||+|||+++|+++|+++|++| |.| ..|+|+++ ++.++|||||+|.+.++|.+|+......+.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g 83 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNG 83 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS-CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETT
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC-CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCC
Confidence 345899999999999999999999995 999 89999988 6779999999999999999999884433333
No 263
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.31 E-value=2.1e-12 Score=103.08 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=59.2
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccC--CC-cceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HH-STRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~--g~-srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..++|||+|||.++|+++|+++|++| |.|.++.++.+. +. ++|||||+|.+.++|.+|+...+...+..
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY-GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 35799999999999999999999995 999999999874 33 89999999999999999998655544433
No 264
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.9e-12 Score=106.61 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=57.9
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..++|||+|||+++|++||+++|++| |.+ .|+|+++ +++++|||||+|.+.++|++|+......+.+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 82 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPL-NPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHR 82 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSC-CCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc-Cce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCc
Confidence 45899999999999999999999995 954 9999887 67899999999999999999997644444333
No 265
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=5.6e-12 Score=104.22 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=62.0
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc-hhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP-SIAWL 427 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~-~i~~~ 427 (437)
...++|||+|||.++|+++|+++|++| | |..|+++++ ++.++|||||+|.+.++|.+|+......+...+ .|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 345899999999999999999999996 8 999999988 477999999999999999999944333333332 35555
Q ss_pred hh
Q 013726 428 EE 429 (437)
Q Consensus 428 ~~ 429 (437)
..
T Consensus 91 ~~ 92 (103)
T 2dng_A 91 EG 92 (103)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 266
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.31 E-value=4.5e-12 Score=113.70 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=63.2
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCC--ceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIA 425 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G--~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~ 425 (437)
..++|||+|||+++|+++|+++|++| | .|..|+|+.| +|.++|||||+|.+.++|.+|+...+...+... .|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~-G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSI-GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHT-TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH-CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 35799999999999999999999995 9 9999999988 678999999999999999999998666544443 344
Q ss_pred hh
Q 013726 426 WL 427 (437)
Q Consensus 426 ~~ 427 (437)
||
T Consensus 133 ~a 134 (156)
T 3n9u_C 133 PA 134 (156)
T ss_dssp EC
T ss_pred Ec
Confidence 44
No 267
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.2e-12 Score=106.87 Aligned_cols=75 Identities=25% Similarity=0.409 Sum_probs=62.1
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||.++|+++|+++|++| |.|..|+|+.+ ++.++|||||+|.+.++|.+|+ ..+...+... .|.|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAV-GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45899999999999999999999995 99999999987 4679999999999999999999 5444333332 35555
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 102 ~ 102 (114)
T 2cq4_A 102 Q 102 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 268
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.30 E-value=6.8e-12 Score=109.15 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=65.9
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIA 425 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~ 425 (437)
....++|||+|||.++|+++|+++|++| |.|.+|+++++ ++.++|||||+|.+.++|.+|+...+...+... .|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY-GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH-SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999999999999999999996 99999999987 467999999999999999999987666544443 355
Q ss_pred hhhh
Q 013726 426 WLEE 429 (437)
Q Consensus 426 ~~~~ 429 (437)
|+..
T Consensus 118 ~a~~ 121 (139)
T 1u6f_A 118 LAAS 121 (139)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 6554
No 269
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=3.4e-12 Score=105.31 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=63.1
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||..+++++|+++|++| |.|..++++.+ .+.++|||||+|.+.++|.+|+...+...+... .+.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEV-GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTT-SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhc-CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35899999999999999999999995 99999999987 577999999999999999999976555433322 35555
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 86 ~ 86 (104)
T 1p1t_A 86 A 86 (104)
T ss_dssp T
T ss_pred C
Confidence 4
No 270
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=5.4e-12 Score=103.32 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=65.2
Q ss_pred cccEEEEEcCCccCCHHHHH----HHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhh
Q 013726 352 CARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIA 425 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLr----elF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~ 425 (437)
..++|||+|||.++++++|+ ++|++| |.|.+|+++.+... +|||||+|.+.++|++|+...+...++.. .+.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~-G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARH-GKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccc-CcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34799999999999999999 999996 99999999988555 99999999999999999987776554443 466
Q ss_pred hhhhhc
Q 013726 426 WLEEFS 431 (437)
Q Consensus 426 ~~~~~s 431 (437)
||..-+
T Consensus 86 ~a~~~~ 91 (96)
T 2dgx_A 86 LATGAS 91 (96)
T ss_dssp ECCCSS
T ss_pred EcCCCC
Confidence 665433
No 271
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.30 E-value=5.6e-12 Score=107.58 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=63.4
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc-hhhh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP-SIAW 426 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~-~i~~ 426 (437)
....++|||+|||.++|+++|+++|++| |.|..|+++++ .+.++|||||+|.+.++|.+|+......+.+.+ .|.|
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSC-GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTT-SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 4456899999999999999999999995 99999999987 677999999999999999999943333333332 3555
Q ss_pred hh
Q 013726 427 LE 428 (437)
Q Consensus 427 ~~ 428 (437)
+.
T Consensus 112 a~ 113 (124)
T 2jwn_A 112 KR 113 (124)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 272
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=5.4e-12 Score=104.51 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=60.8
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccC---CCcceEEEEEeCCHHHHHHHHhhcCceeccCc-hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---HHSTRIAFVEFVMVIASSTLFIHTEFYILHNP-SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~---g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~-~i~~~ 427 (437)
..++|||+|||.++|+++|+++|++| | |..|+|+++. +.++|||||+|.+.++|++|+......+...+ .|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTS-C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHC-C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 45899999999999999999999995 9 9999999883 78999999999999999999944333333322 35555
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 92 ~ 92 (104)
T 1wi8_A 92 D 92 (104)
T ss_dssp C
T ss_pred c
Confidence 4
No 273
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.29 E-value=1.1e-11 Score=104.02 Aligned_cols=79 Identities=22% Similarity=0.201 Sum_probs=69.4
Q ss_pred ccCCcEEEEecCCc-----cchHHHHHHHHhcCCCeeEEEEeeCCC---CCceEEEEEEcCHHHHHHHHH-hcCeEeeee
Q 013726 253 EIIRRTVYVSDIDQ-----QVTEEQLAALFVGCGQVVDCRICGDPN---SVLRFAFIEFTDEEGARAALN-LAGTMLGFY 323 (437)
Q Consensus 253 ~~~~rtLfVgNLp~-----~~tee~L~~~F~~~G~I~~vri~~d~~---~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr 323 (437)
...+++|+|+|+.. +-++++|++.|++||.|.+|+++.++. .++|||||+|.+.++|.+|+. |||..++|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999963 237899999999999999999998764 369999999999999999999 999999999
Q ss_pred eeEEeccC
Q 013726 324 PVRVLPSK 331 (437)
Q Consensus 324 ~L~V~~s~ 331 (437)
.|.|.++.
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999874
No 274
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.29 E-value=2.1e-12 Score=104.89 Aligned_cols=69 Identities=16% Similarity=0.028 Sum_probs=58.5
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..++|||+|||.++|+++|+++|++| |.|..+.++.+ .+.++|||||+|.+.++|.+|+...+...+..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGY-QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTS-CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 35899999999999999999999995 99998877775 56799999999999999999998655544433
No 275
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.29 E-value=4.6e-12 Score=110.13 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=66.4
Q ss_pred cEEEEecC----CccchHHHHHHHHhcCCCeeEEEEeeCCCC--CceEEEEEEcC----HHH----HHHHHH---hcCeE
Q 013726 257 RTVYVSDI----DQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD----EEG----ARAALN---LAGTM 319 (437)
Q Consensus 257 rtLfVgNL----p~~~tee~L~~~F~~~G~I~~vri~~d~~~--s~GfaFVeF~~----~e~----A~~Al~---lng~~ 319 (437)
..|||+|| |+.+++++|+++|++||+|.+|.++.|+.+ ++|||||+|.+ +++ |.+|+. ++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999987 59999999996 333 777765 69999
Q ss_pred eeeeeeEEeccC
Q 013726 320 LGFYPVRVLPSK 331 (437)
Q Consensus 320 l~Gr~L~V~~s~ 331 (437)
++|+.|+|..-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999754
No 276
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.1e-12 Score=107.73 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=52.9
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIH 413 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~ 413 (437)
.++++|||+|||.++|+++|+++|++| |.|.+|.++++ +|||||+|.+.++|.+|+..
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~f-G~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPF-GKVTNILMLKG----KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTT-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEECC----CCEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999995 99999999875 67999999999999988874
No 277
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.1e-12 Score=111.06 Aligned_cols=73 Identities=21% Similarity=0.147 Sum_probs=59.4
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCc----eeccCchhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEF----YILHNPSIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~----~~~~~~~i~~ 426 (437)
.++++|||+|||+++|+++|+++|++| |.|.+|+|+++ +|||||+|++.++|.+|+...+. +......|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~f-G~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTT-SCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 356899999999999999999999995 99999999976 67999999999999988875432 2233334666
Q ss_pred hh
Q 013726 427 LE 428 (437)
Q Consensus 427 ~~ 428 (437)
+.
T Consensus 104 a~ 105 (119)
T 2ad9_A 104 SN 105 (119)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 278
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.29 E-value=5.5e-12 Score=109.46 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=64.0
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIA 425 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~ 425 (437)
....++|||+|||.++|+++|+++|++| |.|..|+++++ ++.++|||||+|.+.++|++|+...+...+... .|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKY-GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTT-SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456899999999999999999999995 99999999987 567999999999999999999886554333322 355
Q ss_pred hhh
Q 013726 426 WLE 428 (437)
Q Consensus 426 ~~~ 428 (437)
|+.
T Consensus 122 ~a~ 124 (129)
T 2kxn_B 122 FSI 124 (129)
T ss_dssp CCS
T ss_pred Eec
Confidence 553
No 279
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=7.7e-12 Score=100.94 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=59.1
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..++|||+|||.++|+++|+++|++ | .|..|+++++ .|.++|||||+|.+.++|++|+. .+...++.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~-~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAP-L-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTT-S-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred CccEEEEECCCCCCCHHHHHHHHhh-C-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 4589999999999999999999999 5 8999999988 67799999999999999999999 66544443
No 280
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.29 E-value=4.2e-12 Score=108.28 Aligned_cols=67 Identities=12% Similarity=0.017 Sum_probs=58.8
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCc---eEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGE---VYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~---I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
..++|||+|||+++|+++|+++|++| |. |..|+|+++ .++++|||||+|.+.++|++|+......+.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~ 86 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDC-TIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMG 86 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTS-CBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEET
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc-CCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeEC
Confidence 45899999999999999999999995 99 899999987 678999999999999999999995444333
No 281
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=3.5e-12 Score=106.92 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=59.0
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcC--c--eeccCchhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTE--F--YILHNPSIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~--~--~~~~~~~i~~~ 427 (437)
+.++|||+|||.++|+++|+++|++| |.|.+|.++++ ||||||+|.+.++|.+|+...+ . +..+...+.|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~f-G~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKF-GTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTT-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 45899999999999999999999995 99999999874 6799999999999988887432 2 23333356666
Q ss_pred hh
Q 013726 428 EE 429 (437)
Q Consensus 428 ~~ 429 (437)
..
T Consensus 89 ~~ 90 (104)
T 1wex_A 89 TS 90 (104)
T ss_dssp SS
T ss_pred cC
Confidence 53
No 282
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.28 E-value=3.2e-12 Score=102.85 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=60.9
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhhh
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLEE 429 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~~ 429 (437)
++|||+|||.++++++|+++|++| |.|.+++++++ .+.++|||||+|.+.+ |.+|+...+...+... .+.||..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF-GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH-TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc-CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 689999999999999999999996 99999999988 4779999999999999 9888887665433332 3555543
No 283
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.28 E-value=6.5e-12 Score=107.48 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=64.0
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~ 426 (437)
...++|||+|||.++|+++|+++|++| |.|..|.|+.+ .+.++|||||+|.+.++|.+|+...+...+... .|.|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEY-GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345899999999999999999999995 99999999988 677999999999999999999875554433332 4666
Q ss_pred hh
Q 013726 427 LE 428 (437)
Q Consensus 427 ~~ 428 (437)
|.
T Consensus 99 a~ 100 (126)
T 3ex7_B 99 CF 100 (126)
T ss_dssp SE
T ss_pred ec
Confidence 54
No 284
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=4.9e-12 Score=106.21 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=63.8
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceE--------EEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVY--------RLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~--------~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
...++|||+|||.++|+++|+++|++| |.|. .|+|+.+ .+.++|||||+|.+.++|.+|+...+...+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQC-GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTT-SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc-CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 356899999999999999999999995 9999 5999887 5779999999999999999999865554333
Q ss_pred Cc--hhhhhhh
Q 013726 421 NP--SIAWLEE 429 (437)
Q Consensus 421 ~~--~i~~~~~ 429 (437)
.. .|.|+..
T Consensus 92 g~~l~V~~a~~ 102 (113)
T 2cpe_A 92 GSKLKVSLARK 102 (113)
T ss_dssp TEECEEECSSC
T ss_pred CCEEEEEECCC
Confidence 32 3555543
No 285
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=9e-12 Score=103.78 Aligned_cols=78 Identities=17% Similarity=0.156 Sum_probs=63.8
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCc-eEEEEEe-cc--CCCcceEEEEEeCCHHHHHHHHhhcC---c-eeccCch
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGE-VYRLRLL-GD--YHHSTRIAFVEFVMVIASSTLFIHTE---F-YILHNPS 423 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~-I~~v~i~-kd--~g~srGfAFVeF~s~e~A~kal~~~~---~-~~~~~~~ 423 (437)
..++|||+|||.++|+++|+++|++| |. |..|.++ .+ .+.++|||||+|.+.++|.+|+...+ . +..+...
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH-STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHh-cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45899999999999999999999996 98 9999998 55 45799999999999999999998753 2 2333335
Q ss_pred hhhhhhh
Q 013726 424 IAWLEEF 430 (437)
Q Consensus 424 i~~~~~~ 430 (437)
+.||..-
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 7777643
No 286
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=3e-12 Score=104.61 Aligned_cols=76 Identities=14% Similarity=0.010 Sum_probs=61.8
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||.++|+++|+++|++| |.|..+.++.+ .+.++|||||+|.+.++|++|+...+...++.. .+.|+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~-G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGY-QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTS-CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc-CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45899999999999999999999995 99988777765 667999999999999999999977665433332 34444
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 3
No 287
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.28 E-value=8.3e-12 Score=106.75 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=64.9
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAW 426 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~ 426 (437)
....++|||+|||..+++++|+++|++| |.|.+|+++.+ .+.++|||||+|.+.++|.+|+...+...++.. .|.|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTT-SCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456899999999999999999999995 99999999988 677999999999999999999986665444433 3555
Q ss_pred hh
Q 013726 427 LE 428 (437)
Q Consensus 427 ~~ 428 (437)
|.
T Consensus 111 a~ 112 (124)
T 2kt5_A 111 VA 112 (124)
T ss_dssp EC
T ss_pred eC
Confidence 43
No 288
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=9.3e-12 Score=103.94 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=62.6
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
...++|||+|||.++|+++|+++|++| |.|..|.+..+ +.++|||||+|.+.++|++|+...+...++.. .+.|+.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKY-GAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 346899999999999999999999995 99999999664 45899999999999999999966555444333 355554
Q ss_pred h
Q 013726 429 E 429 (437)
Q Consensus 429 ~ 429 (437)
.
T Consensus 98 ~ 98 (109)
T 1x4a_A 98 S 98 (109)
T ss_dssp C
T ss_pred c
Confidence 3
No 289
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=3.5e-12 Score=110.22 Aligned_cols=69 Identities=13% Similarity=0.038 Sum_probs=59.2
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCce----EEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEV----YRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I----~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
....+|||+|||+++|++||+++|++| |.| ..|+|+++ +|+++|||||+|.+.++|++|+.....++.+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~-g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~g 94 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQH-CPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGK 94 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTT-SCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhh-CCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCC
Confidence 345899999999999999999999995 875 68999887 7789999999999999999999874444433
No 290
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.28 E-value=1.1e-11 Score=110.26 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=66.2
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~ 426 (437)
...++|||+|||.++|+++|+++|++| |.|..|.|+.+ ++.++|||||+|.+.++|.+|+...+...+... .|.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS-GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356899999999999999999999995 99999999988 567999999999999999999986555433333 4777
Q ss_pred hhhh
Q 013726 427 LEEF 430 (437)
Q Consensus 427 ~~~~ 430 (437)
|...
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 7543
No 291
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.28 E-value=4.4e-12 Score=104.55 Aligned_cols=60 Identities=20% Similarity=0.413 Sum_probs=56.4
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFI 412 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~ 412 (437)
..++|||+|||.++|+++|+++|++| |.|.+|+++.+ .+.++|||||+|.+.++|.+|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARY-GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 45899999999999999999999995 99999999988 67799999999999999999998
No 292
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=6.6e-12 Score=106.14 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=57.8
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
..+|||+|||+++|++||+++|++ | .|..|+|+++ .|+++|||||+|.+.++|.+|+......+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~-~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g 82 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHG-L-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQ 82 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTT-S-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhcc-C-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECC
Confidence 479999999999999999999999 5 7999999987 6789999999999999999999655444433
No 293
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.27 E-value=9.9e-12 Score=107.74 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=62.5
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
....++|||+|||..+|+++|+++|++| |.|..++++++ .+.++|||||+|.+.++|.+|+...+...+..
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGG-SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhc-CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456899999999999999999999996 99999999987 56799999999999999999998777654444
No 294
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=4.8e-12 Score=106.45 Aligned_cols=78 Identities=6% Similarity=0.187 Sum_probs=64.5
Q ss_pred ccccEEEEEcCCccCCHHHHH---HHhhhcCCceEEEEEeccCC-----CcceEEEEEeCCHHHHHHHHhhcCceeccCc
Q 013726 351 MCARTIYCTNIDKKVTQADVK---LFFESVCGEVYRLRLLGDYH-----HSTRIAFVEFVMVIASSTLFIHTEFYILHNP 422 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLr---elF~~f~G~I~~v~i~kd~g-----~srGfAFVeF~s~e~A~kal~~~~~~~~~~~ 422 (437)
...++|||+|||+++++++|+ ++|++| |.|..|.++++.+ .++|||||+|.+.++|++|+...+...+...
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~-G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKF-GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTT-SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhcc-CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 345899999999999999999 999995 9999999998843 4779999999999999999997666544443
Q ss_pred --hhhhhhh
Q 013726 423 --SIAWLEE 429 (437)
Q Consensus 423 --~i~~~~~ 429 (437)
.+.||..
T Consensus 92 ~l~V~~a~~ 100 (111)
T 2cpi_A 92 TLKASLGTT 100 (111)
T ss_dssp EEEEESCCC
T ss_pred EEEEEeccc
Confidence 3666654
No 295
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.27 E-value=1.9e-12 Score=114.26 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=58.1
Q ss_pred ceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCCHHHHHHHh
Q 013726 296 LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 374 (437)
Q Consensus 296 ~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vteedLrelF 374 (437)
+|+||.+|.-++.+..++. +... .+|...--... ...........++|||+|||+++|++||+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F 67 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSG------------DSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 67 (139)
T ss_dssp ---------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHH
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCCCC------------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3678888888877777665 3322 22222110000 00001112345799999999999999999999
Q ss_pred hhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 375 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 375 ~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
++| | |..|+|++| .++++|||||+|.+.++|++|+......+.+.
T Consensus 68 ~~~-G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR 113 (139)
T 2hgn_A 68 SPL-N-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHR 113 (139)
T ss_dssp CSC-C-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSC
T ss_pred Hhc-C-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCE
Confidence 995 9 779999988 67899999999999999999995544444333
No 296
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.26 E-value=7e-12 Score=112.17 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=67.6
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
...++|||+|||+++|+++|+++|++||.|..+ .....++|||||+|.+.++|.+|+. |+|..++|+.|.|.++.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 456899999999999999999999999988766 3334478999999999999999999 99999999999999975
No 297
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.26 E-value=6e-12 Score=110.60 Aligned_cols=67 Identities=10% Similarity=0.008 Sum_probs=58.8
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCc---eEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGE---VYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~---I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
..++|||+|||+++|+++|+++|+++ |. |..|+|++| .|+++|||||+|.+.++|++|+. .+...+.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~-G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDC-TIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTC-CCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 34799999999999999999999995 99 899999987 67899999999999999999998 5544333
No 298
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.26 E-value=4.3e-12 Score=109.92 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=58.2
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEE--EEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCce
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR--LRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFY 417 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~--v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~ 417 (437)
....++|||+|||+++|+++|+++|++| |.|.. |+|++| ++.++|||||+|.+. +|.+|+...+..
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~-G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPY-AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGG-CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh-CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 3456899999999999999999999995 99977 999988 578999999999999 998887776654
No 299
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.5e-12 Score=104.55 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=52.6
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIH 413 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~ 413 (437)
..++|||+|||.++|+++|+++|++| |.|.+|+++++ ++|||||+|.+.++|++++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~ 61 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY-GDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE 61 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT-SCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc-CCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC
Confidence 45899999999999999999999995 99999999875 788999999999999887655
No 300
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=2.8e-11 Score=101.96 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=66.5
Q ss_pred ccCCcEEEEecCCccc-----------hHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEe
Q 013726 253 EIIRRTVYVSDIDQQV-----------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML 320 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~-----------tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l 320 (437)
+..+++|+|+||.... ++++|+++|++||.|.+|.+ .++. ++|||||+|.+.++|.+|+. |||..+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~-~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH-PDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC-TTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC-CCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4467999999994332 36899999999999999966 4443 78999999999999999998 999999
Q ss_pred eeeeeEEeccC
Q 013726 321 GFYPVRVLPSK 331 (437)
Q Consensus 321 ~Gr~L~V~~s~ 331 (437)
+|++|.|.++.
T Consensus 90 ~gr~l~v~~a~ 100 (112)
T 2dit_A 90 GGRQITAQAWD 100 (112)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEEeC
Confidence 99999999975
No 301
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.26 E-value=1e-11 Score=101.15 Aligned_cols=67 Identities=10% Similarity=0.166 Sum_probs=59.5
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCchh
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSI 424 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~i 424 (437)
+.-|||+||++.+|+++|+++|.+| |+|.++++.. ++|||||+|.+.++|.+|+...+...+....|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~-G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I 73 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH-GPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTI 73 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH-SCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh-CCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 4789999999999999999999996 9999999975 68899999999999999998888766665543
No 302
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.25 E-value=5.3e-12 Score=105.52 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=58.9
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCc---eEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGE---VYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~---I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
...+|||+|||+++|+++|+++|+++ |. |..|+|+++ .|+++|||||+|.+.++|.+|+......+.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~-g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~ 80 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDC-RIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMG 80 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTS-CBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhc-CCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeC
Confidence 45899999999999999999999994 88 899999987 678999999999999999999985444443
No 303
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.25 E-value=1.2e-11 Score=118.68 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=69.7
Q ss_pred ccCCcEEEEecCCccc---------hHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEe--
Q 013726 253 EIIRRTVYVSDIDQQV---------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML-- 320 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~---------tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l-- 320 (437)
....+||||+||+..+ ++++|+++|++||.|.+|+++.+ +|||||+|.+.++|..|++ |+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 3467899999999998 89999999999999999999864 5899999999999999999 999999
Q ss_pred ----------eeeeeEEeccCC
Q 013726 321 ----------GFYPVRVLPSKT 332 (437)
Q Consensus 321 ----------~Gr~L~V~~s~~ 332 (437)
.|+.|.|.+++.
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-
T ss_pred cccccccccCCCCEEEEEEccC
Confidence 899999999874
No 304
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.24 E-value=1.4e-11 Score=118.51 Aligned_cols=78 Identities=27% Similarity=0.329 Sum_probs=69.1
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-h-cCeEee---eeeeEEe
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-L-AGTMLG---FYPVRVL 328 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-l-ng~~l~---Gr~L~V~ 328 (437)
..++|||+|||+.+|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|+. | ++..+. +++|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 3578999999999999999999999999999999988543 58999999999999999999 8 555554 9999999
Q ss_pred ccCC
Q 013726 329 PSKT 332 (437)
Q Consensus 329 ~s~~ 332 (437)
++..
T Consensus 175 ~~~~ 178 (261)
T 3sde_A 175 PMEQ 178 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 8763
No 305
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.24 E-value=1.2e-11 Score=107.33 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=58.1
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceE--EEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVY--RLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~--~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..++|||+|||+++|+++|+++|++| + |. .|+|++| .|+++|||||+|.+.++|++|+...+..+...
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR 111 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-E-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHR 111 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-C-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-C-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCE
Confidence 45799999999999999999999995 5 66 8999987 67899999999999999999998755444333
No 306
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.24 E-value=1.6e-11 Score=103.28 Aligned_cols=75 Identities=16% Similarity=0.292 Sum_probs=61.6
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
..++|||+|||..+|+++|+++|++| |.|.+|.++++ +.++|||||+|.+.++|.+|+...+...++.. .+.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKY-GPIRQIRVGNT-PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEECS-TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 45899999999999999999999995 99999999875 44699999999999999999886555443332 355554
No 307
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.1e-12 Score=108.11 Aligned_cols=61 Identities=11% Similarity=0.200 Sum_probs=55.0
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--C---CCcceEEEEEeCCHHHHHHHHhhc
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--Y---HHSTRIAFVEFVMVIASSTLFIHT 414 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~---g~srGfAFVeF~s~e~A~kal~~~ 414 (437)
..++|||+|||+++|+++|+++|++| |.|. +.++.+ . |+++|||||+|.+.++|++|+...
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~-G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRF-GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTT-CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc-CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 35899999999999999999999995 9999 888776 2 679999999999999999998876
No 308
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.24 E-value=6.3e-12 Score=103.69 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=59.5
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc---CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc-hhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD---YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP-SIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd---~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~-~i~~ 426 (437)
...++|||+|||.++|+++|+++|++| | |.+|+++++ .|+++|||||+|.+.++|.+|+......+.+.+ .|.|
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSS-C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 356899999999999999999999995 9 999999987 467999999999999999999943333333322 3555
Q ss_pred hh
Q 013726 427 LE 428 (437)
Q Consensus 427 ~~ 428 (437)
+.
T Consensus 95 a~ 96 (100)
T 2j76_E 95 AD 96 (100)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 309
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.2e-11 Score=98.16 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=58.9
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLEE 429 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~~ 429 (437)
..++|||+|||.++|+++|+++|++| |.|..|++. +|||||+|.+.++|.+|+...+...++.. .+.|+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQY-GKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTS-SCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 45899999999999999999999995 999999998 57999999999999999876665433332 4666544
No 310
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=4.4e-12 Score=106.13 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=59.3
Q ss_pred cccEEEEEcCCc-cCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCc----eeccCchhhh
Q 013726 352 CARTIYCTNIDK-KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEF----YILHNPSIAW 426 (437)
Q Consensus 352 ~~~tL~V~NLp~-~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~----~~~~~~~i~~ 426 (437)
+.++|||+|||+ ++|++||+++|++| |.|.+|+|+++ +|||||+|++.++|.+|+...+. +..+...+.|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~f-G~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPF-GVISNHLILNK----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGG-SCEEEEEECSS----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhc-CCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 568999999999 99999999999996 99999999875 46999999999999888875432 2233335666
Q ss_pred hhh
Q 013726 427 LEE 429 (437)
Q Consensus 427 ~~~ 429 (437)
|..
T Consensus 89 a~~ 91 (102)
T 1x4d_A 89 SQK 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 653
No 311
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=103.37 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=53.5
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcC
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTE 415 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~ 415 (437)
.++++|||+|||+++|+++|+++|++| |.|.+++++++ ||||||+|.+.++|.+|+...+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~f-G~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln 78 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEF-GPISYVVVMPK----KRQALVEFEDVLGACNAVNYAA 78 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhc
Confidence 356899999999999999999999996 99999999863 6799999999999988877543
No 312
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.22 E-value=1.2e-11 Score=115.41 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=67.6
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCe--eEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeee----eeE
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQV--VDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFY----PVR 326 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I--~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr----~L~ 326 (437)
...++|||+|||+++|+++|+++|++||.| .++++..+....+|||||+|.+.++|.+|+. |||..+.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 456899999999999999999999999999 8999988765557999999999999999999 999999887 455
Q ss_pred Eec
Q 013726 327 VLP 329 (437)
Q Consensus 327 V~~ 329 (437)
|++
T Consensus 201 vk~ 203 (205)
T 3tyt_A 201 LKL 203 (205)
T ss_dssp CEE
T ss_pred EEe
Confidence 554
No 313
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=2e-11 Score=99.72 Aligned_cols=74 Identities=8% Similarity=0.180 Sum_probs=60.7
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceecc----Cchhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILH----NPSIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~----~~~i~~ 426 (437)
...++|||+|||.++|+++|+++|++| |.|.+|.+..+ +|||||+|.+.++|++|+...+...+. ...+.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRF-GSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTT-SCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 345899999999999999999999995 99999999865 679999999999999998865554433 224666
Q ss_pred hhh
Q 013726 427 LEE 429 (437)
Q Consensus 427 ~~~ 429 (437)
+..
T Consensus 90 a~~ 92 (97)
T 1why_A 90 AKS 92 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 314
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.22 E-value=1.8e-11 Score=99.64 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=61.6
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
...++|||+|||..+|+++|+++|++| |.|..+ ...+.++|||||+|.+.++|.+|+...+...++.. .+.|+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~-g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDA-LEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSE-EEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 356899999999999999999999995 988777 55788999999999999999999997666544433 355554
Q ss_pred h
Q 013726 429 E 429 (437)
Q Consensus 429 ~ 429 (437)
+
T Consensus 90 ~ 90 (96)
T 1fjc_A 90 E 90 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 315
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=2.9e-11 Score=101.06 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=61.5
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccC-------chh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHN-------PSI 424 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~-------~~i 424 (437)
..++|||+|||+++|+++|+++|++| |.|..|.|+.+ |||||+|.+.++|++|+...+...+.. ..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREA-GDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGG-SCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 35899999999999999999999995 99999999987 799999999999999999777655543 246
Q ss_pred hhhhh
Q 013726 425 AWLEE 429 (437)
Q Consensus 425 ~~~~~ 429 (437)
.||..
T Consensus 88 ~~a~~ 92 (108)
T 1x4c_A 88 KVDGP 92 (108)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 66654
No 316
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.22 E-value=1.7e-11 Score=116.53 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=63.5
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCC--ceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIA 425 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G--~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~ 425 (437)
..++|||+|||+++|+++|+++|++| | .|.+|+|++| +++++|||||+|.+.++|.+|+...+...++.. .|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~-G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL-GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT-TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH-CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 45799999999999999999999995 9 9999999988 678999999999999999999987665444433 455
Q ss_pred hhh
Q 013726 426 WLE 428 (437)
Q Consensus 426 ~~~ 428 (437)
||.
T Consensus 146 ~a~ 148 (229)
T 3q2s_C 146 PVN 148 (229)
T ss_dssp ECC
T ss_pred ECC
Confidence 553
No 317
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.3e-11 Score=105.81 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=56.3
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
...++|||+|||+++|+++|+++|++| |.|..+.++.+ ++.++|||||+|.+.++|.+|+......+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~ 92 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKL-DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMG 92 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSS-CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCST
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeEC
Confidence 345899999999999999999999995 99988544443 678999999999999999999994433333
No 318
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=101.59 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=59.8
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCce--eccCchhhhhhh
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFY--ILHNPSIAWLEE 429 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~--~~~~~~i~~~~~ 429 (437)
++|||+|||.++|+++|+++|++| |.|..|.++++ ++|||||+|.+.++|.+|+...+.. ..+...+.|+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY-GPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH-CCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 489999999999999999999996 99999999987 7889999999999999888754332 233335666654
No 319
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.8e-11 Score=100.63 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=60.2
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
...++|||+|||.++|+++|+++|++| |.| +++.+ .++++|||||+|.+.++|++|+...+...++.. .+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKA-TFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSC-SEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 356899999999999999999999995 987 55555 677999999999999999999987666544433 35555
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 89 ~ 89 (101)
T 2fc9_A 89 G 89 (101)
T ss_dssp S
T ss_pred C
Confidence 4
No 320
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=2.8e-11 Score=105.00 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=62.1
Q ss_pred cccEEEEEcCCccCCHHHHH----HHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhh
Q 013726 352 CARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIA 425 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLr----elF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~ 425 (437)
+.++|||+|||+.+++++|+ ++|++| |.|.+|.+.+ +++++|||||+|.+.++|.+|+...+++.+... .|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~-G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQ-GDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccC-CCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 45799999999999999876 799996 9999998864 577899999999999999999887666544333 466
Q ss_pred hhhh
Q 013726 426 WLEE 429 (437)
Q Consensus 426 ~~~~ 429 (437)
||..
T Consensus 106 ~a~~ 109 (127)
T 2a3j_A 106 FSET 109 (127)
T ss_dssp ECCC
T ss_pred EccC
Confidence 6654
No 321
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=2.4e-11 Score=99.70 Aligned_cols=74 Identities=11% Similarity=0.219 Sum_probs=60.5
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
...++|||+|||..+|+++|+++|++| |.|..|++.++ +|||||+|.+.++|.+|+...+...++.. .+.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKY-GKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTT-CCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhc-CCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 345899999999999999999999995 99999999865 67999999999999999876555433332 466665
Q ss_pred h
Q 013726 429 E 429 (437)
Q Consensus 429 ~ 429 (437)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 322
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=2.6e-11 Score=102.25 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=60.1
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
..++|||+|||+++|+++|+++|++| |.|..|.+++ ++|||||+|.+.++|.+|+...+...+... .+.||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF-GSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 35799999999999999999999995 9999999875 567999999999999999887666544333 466764
No 323
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=3.3e-11 Score=100.68 Aligned_cols=75 Identities=17% Similarity=0.341 Sum_probs=61.8
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
....++|||+|||..+|+++|+++|++| |.|..|++.++ +|||||+|.+.++|.+|+...+...++.. .|.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPF-GQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHH-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 3456899999999999999999999996 99999999987 67999999999999999876555433333 46666
Q ss_pred hh
Q 013726 428 EE 429 (437)
Q Consensus 428 ~~ 429 (437)
..
T Consensus 97 ~~ 98 (109)
T 1x4g_A 97 KE 98 (109)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 324
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=3e-11 Score=99.30 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=59.2
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
..++|||+|||.++|+++|+++|++| |.|.++++.+ ++|||||+|.+.++|.+|+...+...++.. .+.||.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF-GFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT-SCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC-CCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 45899999999999999999999995 9999999983 567999999999999999876555443333 355554
No 325
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.19 E-value=1.4e-11 Score=100.33 Aligned_cols=76 Identities=18% Similarity=0.311 Sum_probs=61.6
Q ss_pred cccEEEEEcCCccCCHHHHH----HHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhh
Q 013726 352 CARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIA 425 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLr----elF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~ 425 (437)
..++|||+|||.++++++|+ ++|++| |.|..|.+.+ .+.++|||||+|.+.++|.+|+...+...++.. .+.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~-G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRF-GQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGG-SCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhC-CCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45899999999999999999 999995 9999999874 466789999999999999999876554433332 355
Q ss_pred hhhh
Q 013726 426 WLEE 429 (437)
Q Consensus 426 ~~~~ 429 (437)
|+..
T Consensus 85 ~a~~ 88 (97)
T 1nu4_A 85 YAKT 88 (97)
T ss_dssp ECSS
T ss_pred EccC
Confidence 5543
No 326
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=3.5e-11 Score=95.52 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=53.1
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhc
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHT 414 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~ 414 (437)
..++|||+|||.++|+++|+++|++| |.|..|++.++ +|||||+|.+.++|.+|+...
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~-G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQF-GEIRTITVVQR----QQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTT-SCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTT
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhC-CCEeEEEEECC----CCEEEEEECCHHHHHHHHHHh
Confidence 45899999999999999999999995 99999999974 679999999999999999854
No 327
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.18 E-value=2.9e-11 Score=102.60 Aligned_cols=67 Identities=10% Similarity=-0.042 Sum_probs=58.1
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP 422 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G-~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~ 422 (437)
..+|||+|||+++|+++|+++|+++ | .|..+.+..+ .++|||||+|.+.++|++|+...+...+...
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~-G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLAREN-SLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHH-TCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHh-CCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4799999999999999999999996 9 9999998643 4789999999999999999987766554443
No 328
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.17 E-value=3.7e-11 Score=100.48 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=57.6
Q ss_pred cccEEEEEcCCcc-CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 352 CARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 352 ~~~tL~V~NLp~~-vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
..++|||+|||.+ +|+++|+++|++| |.|..|.+ ++|||||+|.+.++|.+|+...+...++.. .|.|+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~-G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY-GRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG-SCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC-CCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3479999999999 9999999999995 99999999 578999999999999999866554433332 455654
No 329
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=7.1e-11 Score=99.22 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=60.2
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCce----EEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEV----YRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SI 424 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I----~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i 424 (437)
...++|||+|||.++|+++|+++|++| |.| ..+++. .+.++|||||+|.+.++|.+|+...+...+... .+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARF-QEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHH-HHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh-CCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 356899999999999999999999996 999 444444 778999999999999999999986555433332 45
Q ss_pred hhhhh
Q 013726 425 AWLEE 429 (437)
Q Consensus 425 ~~~~~ 429 (437)
.|+..
T Consensus 100 ~~a~~ 104 (115)
T 2cpx_A 100 EFGKN 104 (115)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 56543
No 330
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.16 E-value=7.4e-11 Score=93.90 Aligned_cols=64 Identities=27% Similarity=0.396 Sum_probs=55.4
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcC----C-------ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVC----G-------EVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~----G-------~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
..++|||+|||.++|+++|+++|++ | | .|.++++.++ +|||||+|.+.++|.+|+ ..+...++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4589999999999999999999999 6 7 8999999865 679999999999999999 65555444
Q ss_pred C
Q 013726 421 N 421 (437)
Q Consensus 421 ~ 421 (437)
.
T Consensus 79 g 79 (87)
T 2hzc_A 79 G 79 (87)
T ss_dssp T
T ss_pred C
Confidence 3
No 331
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.16 E-value=4.1e-11 Score=100.59 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=59.5
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
....++|||+|||.++|+++|+++|++| |.|..|++. +|||||+|.+.++|.+|+...+...+... .+.|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPF-GPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTT-SCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4567899999999999999999999995 999999998 68999999999999999886555433332 35555
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 101 ~ 101 (108)
T 2jvo_A 101 K 101 (108)
T ss_dssp S
T ss_pred c
Confidence 4
No 332
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.16 E-value=9e-12 Score=102.46 Aligned_cols=75 Identities=8% Similarity=0.063 Sum_probs=59.8
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||.++|+++|+++|++| |.|.. .++.+ .+.++|||||+|.+.++|.+|+. .+...+... .+.|+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISEL-FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH-HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45899999999999999999999996 99988 55554 57799999999999999999998 444333322 45565
Q ss_pred hh
Q 013726 428 EE 429 (437)
Q Consensus 428 ~~ 429 (437)
..
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 333
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.16 E-value=6e-11 Score=96.90 Aligned_cols=71 Identities=10% Similarity=0.148 Sum_probs=57.7
Q ss_pred ccccEEEEEcCCc-cCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceec--cCchhhhh
Q 013726 351 MCARTIYCTNIDK-KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYIL--HNPSIAWL 427 (437)
Q Consensus 351 ~~~~tL~V~NLp~-~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~--~~~~i~~~ 427 (437)
...++|||+|||. .+|+++|+++|++| |.|..|++. +|||||+|.+.++|.+|+...+...+ +...|.|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~-G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTT-CCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 3568999999998 99999999999995 999999995 67999999999999999886554333 22246665
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
.
T Consensus 81 ~ 81 (96)
T 2kvi_A 81 S 81 (96)
T ss_dssp E
T ss_pred C
Confidence 4
No 334
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.16 E-value=8.2e-11 Score=96.66 Aligned_cols=62 Identities=11% Similarity=0.213 Sum_probs=54.5
Q ss_pred ccccEEEEEcCCc-cCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 351 MCARTIYCTNIDK-KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 351 ~~~~tL~V~NLp~-~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
...++|||+|||. ++++++|+++|++| |.|..+++. +|||||+|.+.++|.+|+...+...+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~-G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGG-SCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3468999999998 99999999999995 999999994 68999999999999999886655443
No 335
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.16 E-value=3.6e-11 Score=102.30 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=61.9
Q ss_pred cccccEEEEEcCCcc-CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcC--c--eeccCchh
Q 013726 350 EMCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTE--F--YILHNPSI 424 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~-vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~--~--~~~~~~~i 424 (437)
..++++|||+|||++ +|+++|+++|++| |.|.+|+|.+ ++|||||+|.+.++|.+|+...+ . +..+...+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f-G~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY-GKIKNYILMR----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT-SCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc-CCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999998 9999999999995 9999999975 46799999999999988887432 2 33344467
Q ss_pred hhhhhhc
Q 013726 425 AWLEEFS 431 (437)
Q Consensus 425 ~~~~~~s 431 (437)
.||....
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 7776544
No 336
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.16 E-value=5.7e-11 Score=108.63 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=64.3
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
..++|||+|||+.+++++|+++|++| |.|..|.|+.+ .+.++|||||+|.+.++|.+|+...+...+... .|.||.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHT-SCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45899999999999999999999995 99999999988 577999999999999999999986665444333 355554
No 337
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.15 E-value=4.7e-11 Score=101.16 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=55.9
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..++|||+|||+++|+++|+++|++| |.|..|.|+.+ |||||+|.+.++|++|+...+...++.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA-GDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG-SCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34799999999999999999999995 99999999887 799999999999999998766655444
No 338
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.15 E-value=2.9e-11 Score=101.17 Aligned_cols=70 Identities=17% Similarity=0.353 Sum_probs=61.8
Q ss_pred EecCCccchHHHHHHHH------------hcCCCeeEEEEeeCCCC-CceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeE
Q 013726 261 VSDIDQQVTEEQLAALF------------VGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 326 (437)
Q Consensus 261 VgNLp~~~tee~L~~~F------------~~~G~I~~vri~~d~~~-s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~ 326 (437)
+.||+..+++++|++.| ++||.|.+|+++.+..+ ++|||||+|.+.++|.+|+. |||..++|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888888887766 99999999999887643 69999999999999999999 999999999999
Q ss_pred Eecc
Q 013726 327 VLPS 330 (437)
Q Consensus 327 V~~s 330 (437)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 339
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=5.5e-11 Score=97.20 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=58.2
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
...++|||+|||.++|+++|+++|++| |.|. ++++. +.++|||||+|.+.++|.+|+...+...++.. .+.|+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~-G~v~-~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALREL-GSVP-LRLTW--QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHT-TCCC-SEEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhc-CCEE-EEEEc--CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 345899999999999999999999995 9997 66664 36789999999999999999876555433332 355543
No 340
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.15 E-value=6e-11 Score=98.06 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=58.6
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLEE 429 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~~ 429 (437)
..++|||+|||.++|+++|+++|++| |.|..|++++ |||||+|.+.++|.+|+...+...++.. .+.|+..
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQF-GKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHH-SCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 45899999999999999999999996 9999999873 5999999999999999986555444333 3556543
No 341
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1e-10 Score=94.53 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=58.7
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
...++|||+|||.++|+++|+++|++| |.|..|.+.++ ||||+|.+.++|.+|+...+...++.. .+.|+.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~v~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEY-GPVIECDIVKD------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTT-SCCCEEEECSS------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEECC------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 345899999999999999999999995 99999999843 999999999999999976665544433 355554
No 342
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.7e-10 Score=94.52 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=59.0
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcC--CceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVC--GEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAW 426 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~--G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~ 426 (437)
...++|||+|||..+|+++|+++|++ | |.|..|++. +|||||+|.+.++|.+|+...+...++.. .+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNN-IKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35689999999999999999999998 8 889999875 56999999999999999986665544433 3556
Q ss_pred hhh
Q 013726 427 LEE 429 (437)
Q Consensus 427 ~~~ 429 (437)
+..
T Consensus 86 a~~ 88 (99)
T 2cpd_A 86 AKP 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 343
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=1e-10 Score=94.20 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=58.8
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
...++|||+|||.++|+++|+++|++| |.|..|++.++ ||||+|.+.++|++|+...+...++.. .+.|+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERR-GRVIECDVVKD------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHH-SCEEEEEECSS------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcC-CCEEEEEEECC------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 345899999999999999999999996 99999999843 999999999999999886555433332 455554
Q ss_pred h
Q 013726 429 E 429 (437)
Q Consensus 429 ~ 429 (437)
.
T Consensus 80 ~ 80 (90)
T 2dnp_A 80 K 80 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 344
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.12 E-value=4e-11 Score=104.98 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=60.7
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEE-------EEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRL-------RLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP-- 422 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v-------~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~-- 422 (437)
..++|||+|||+++|+++|+++|++| |.|..+ .....++.++|||||+|.+.++|.+|+...+.+.++..
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRY-VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGG-CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 45899999999999999999999995 999874 11123678999999999999999999987666555443
Q ss_pred hhhhhh
Q 013726 423 SIAWLE 428 (437)
Q Consensus 423 ~i~~~~ 428 (437)
.|.||.
T Consensus 123 ~V~~a~ 128 (143)
T 3egn_A 123 VVQFAR 128 (143)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 356654
No 345
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.12 E-value=1.3e-10 Score=97.41 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=66.6
Q ss_pred CCcEEEEecC--Cccc--------hHHHHHHHHhcCCCeeEEEEeeCCCC----CceEEEEEEcCHHHHHHHHH-hcCeE
Q 013726 255 IRRTVYVSDI--DQQV--------TEEQLAALFVGCGQVVDCRICGDPNS----VLRFAFIEFTDEEGARAALN-LAGTM 319 (437)
Q Consensus 255 ~~rtLfVgNL--p~~~--------tee~L~~~F~~~G~I~~vri~~d~~~----s~GfaFVeF~~~e~A~~Al~-lng~~ 319 (437)
+++.|.+.|+ |... .+++|++.|++||.|.+|+++.++.+ ++|+|||+|.+.++|.+|+. |||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678999998 3232 45799999999999999999887643 58999999999999999999 99999
Q ss_pred eeeeeeEEeccC
Q 013726 320 LGFYPVRVLPSK 331 (437)
Q Consensus 320 l~Gr~L~V~~s~ 331 (437)
++|+.|.|.+..
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999864
No 346
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=1.1e-10 Score=95.84 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=58.5
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhh
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIA 425 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~ 425 (437)
....++|||+|||.++|+++|+++|+++ + .+.++.+ .+.++|||||+|.+.++|.+|+...+...+... .|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS-V---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC-S---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC-e---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456899999999999999999999985 5 4555555 677999999999999999999875444333322 466
Q ss_pred hhhh
Q 013726 426 WLEE 429 (437)
Q Consensus 426 ~~~~ 429 (437)
|+..
T Consensus 88 ~a~~ 91 (102)
T 2fc8_A 88 WAKP 91 (102)
T ss_dssp ECCC
T ss_pred EecC
Confidence 6543
No 347
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.71 E-value=6.8e-12 Score=106.04 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=63.4
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEE--------EEEecc--CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYR--------LRLLGD--YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~--------v~i~kd--~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
..++|||+|||.++|+++|+++|++| |.|.. |+++.+ .+.++|||||+|.+.++|.+|+...+...+..
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQI-GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45899999999999999999999995 99999 888877 56799999999999999999988655443332
Q ss_pred c--hhhhhhh
Q 013726 422 P--SIAWLEE 429 (437)
Q Consensus 422 ~--~i~~~~~ 429 (437)
. .+.|+..
T Consensus 85 ~~l~V~~a~~ 94 (116)
T 2lcw_A 85 NPIKVSFATR 94 (116)
Confidence 2 4666654
No 348
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.10 E-value=1.2e-10 Score=105.28 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=62.1
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceec----cCchhhhhh
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYIL----HNPSIAWLE 428 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~----~~~~i~~~~ 428 (437)
..+|||+||++.+|+++|+++|++| |+|.+|+|..+ .++|||||+|.+.++|.+|+...++..+ ....|.|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~f-G~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHH-SCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhc-CCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 4689999999999999999999996 99999999754 3578999999999999999887777655 233577776
Q ss_pred h
Q 013726 429 E 429 (437)
Q Consensus 429 ~ 429 (437)
.
T Consensus 123 ~ 123 (164)
T 1sjr_A 123 L 123 (164)
T ss_dssp S
T ss_pred C
Confidence 4
No 349
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.4e-10 Score=91.89 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=55.6
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
..++|||+|||.++|+++|+++|++| |.|.+|.+.+..+. ||||+|.+.++|.+|+. .+...+... .+.|+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~-G~v~~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF-GPVASVVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT-SCEEEEEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 34799999999999999999999995 99999833233443 99999999999999999 555443332 345543
No 350
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=9.9e-11 Score=99.87 Aligned_cols=62 Identities=11% Similarity=0.163 Sum_probs=54.6
Q ss_pred cccEEEE--EcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCcee
Q 013726 352 CARTIYC--TNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYI 418 (437)
Q Consensus 352 ~~~tL~V--~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~ 418 (437)
++++||| +||+.++|+++|+++|++| |.|.+|.++.+ +|||||+|.+.++|++|+..+++..
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~f-G~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKC-GLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHH-SCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhc-CCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 4679999 6699999999999999996 99999988753 7899999999999999998777653
No 351
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.09 E-value=9.9e-11 Score=94.08 Aligned_cols=70 Identities=11% Similarity=0.120 Sum_probs=58.3
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~ 427 (437)
..++|||+|||.++|+++|+++|++ | .|.++++. +++|||||+|.+.++|.+|+...+...++.. .+.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKD-Y-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCS-S-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-C-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 3479999999999999999999999 5 89999884 6788999999999999999987766544443 34444
No 352
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=7.6e-11 Score=95.39 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=56.7
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCc-eEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCc-eeccC--chhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGE-VYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEF-YILHN--PSIAWL 427 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~-I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~-~~~~~--~~i~~~ 427 (437)
..++|||+|||.++|+++|+++|++| |. |..+.+. ++|||||+|.+.++|.+|+...+. ..+.. ..+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDR-KLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHT-TCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc-CCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 45899999999999999999999995 99 6666663 478999999999999999886655 33222 246666
Q ss_pred hh
Q 013726 428 EE 429 (437)
Q Consensus 428 ~~ 429 (437)
..
T Consensus 81 ~~ 82 (93)
T 2cqh_A 81 VS 82 (93)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 353
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.04 E-value=5e-10 Score=95.95 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=67.1
Q ss_pred CCcEEEEecCCc--c---chHHHHHHHHhcCCCeeEEEEeeCCCC------CceEEEEEEcCHHHHHHHHH-hcCeEeee
Q 013726 255 IRRTVYVSDIDQ--Q---VTEEQLAALFVGCGQVVDCRICGDPNS------VLRFAFIEFTDEEGARAALN-LAGTMLGF 322 (437)
Q Consensus 255 ~~rtLfVgNLp~--~---~tee~L~~~F~~~G~I~~vri~~d~~~------s~GfaFVeF~~~e~A~~Al~-lng~~l~G 322 (437)
.+++|+++|+-. + --+++|++.|++||.|.+|+++.++.+ ++|++||+|.+.++|.+|+. |||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678999999842 1 246899999999999999999887542 47999999999999999999 99999999
Q ss_pred eeeEEeccC
Q 013726 323 YPVRVLPSK 331 (437)
Q Consensus 323 r~L~V~~s~ 331 (437)
+.|.|.+..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999864
No 354
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=5.4e-10 Score=91.24 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=57.9
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLEE 429 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~~ 429 (437)
..++|||+|+ ++|+++|+++|++| |.|..|.+. .++|||||+|.+.++|.+|+...+...+... .+.|+..
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~-G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPF-GNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTT-SCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhC-CCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 4589999996 89999999999995 999999995 5677999999999999999977666544433 3556543
No 355
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.03 E-value=3.3e-10 Score=98.78 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=59.6
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceE-EEEEeCCHHHHHHHHhhcCceeccC----chhhhh
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI-AFVEFVMVIASSTLFIHTEFYILHN----PSIAWL 427 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGf-AFVeF~s~e~A~kal~~~~~~~~~~----~~i~~~ 427 (437)
.-.|||+||++.+|+++|+++|++| |+|.+|++..+ .+|| |||+|.+.++|.+|+...++..+.. ..|+|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~y-G~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTS-SCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCc-CCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 4678899999999999999999995 99999998864 3577 9999999999988887777755433 247776
Q ss_pred h
Q 013726 428 E 428 (437)
Q Consensus 428 ~ 428 (437)
+
T Consensus 104 k 104 (130)
T 3zzy_A 104 K 104 (130)
T ss_dssp S
T ss_pred C
Confidence 4
No 356
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=4.9e-10 Score=91.01 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=58.2
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEE-EeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR-LLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~-i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
..++|||+|||+++|+++|+++|++| |.|.+|+ ++.+.. .|.|||+|.+.++|.+|+...+...++.. .+.||.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~i~~~~~--~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQY-GVVESCEQVNTDSE--TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHH-SCEEEEEEECCSSS--SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhc-CCeEEEEEeecCCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35899999999999999999999996 9999995 777644 23499999999999999875555433332 355554
No 357
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.01 E-value=5.6e-10 Score=112.36 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=64.2
Q ss_pred ccCCcEEEEec--CCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEee---ee--e
Q 013726 253 EIIRRTVYVSD--IDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG---FY--P 324 (437)
Q Consensus 253 ~~~~rtLfVgN--Lp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~---Gr--~ 324 (437)
...+++|||+| |++++|+++|+++|++||.|.+|++.. ++|||||+|.+.++|.+|++ |||..+. |+ .
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 45678999999 578999999999999999999988754 46899999999999999999 9999883 34 5
Q ss_pred eEEeccC
Q 013726 325 VRVLPSK 331 (437)
Q Consensus 325 L~V~~s~ 331 (437)
|.|.+..
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777653
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.99 E-value=4.7e-10 Score=97.48 Aligned_cols=58 Identities=10% Similarity=0.231 Sum_probs=50.7
Q ss_pred cEEEEEcC----CccCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCC----HHH----HHHHHh
Q 013726 354 RTIYCTNI----DKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVM----VIA----SSTLFI 412 (437)
Q Consensus 354 ~tL~V~NL----p~~vteedLrelF~~f~G~I~~v~i~kd--~g~srGfAFVeF~s----~e~----A~kal~ 412 (437)
++|||+|| |+.+++++|+++|++| |+|.+|.++.| +|.++|||||+|.+ +++ |.+|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f-GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY-GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT-SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 68999999 9999999999999995 99999999999 77899999999996 322 677766
No 359
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.98 E-value=7.3e-10 Score=95.84 Aligned_cols=71 Identities=18% Similarity=0.124 Sum_probs=57.4
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceE-EEEEeCCHHHHHHHHhhcCceeccC----chhhhhh
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI-AFVEFVMVIASSTLFIHTEFYILHN----PSIAWLE 428 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGf-AFVeF~s~e~A~kal~~~~~~~~~~----~~i~~~~ 428 (437)
..|||+||++.+|+++|+++|++| |.|.+|+|..+ .|| |||+|.+.++|.+|+...++..+.. ..|.||+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y-G~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV-GKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT-SCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc-CCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 457899999999999999999995 99999999763 286 9999999999988887766654432 2466665
Q ss_pred h
Q 013726 429 E 429 (437)
Q Consensus 429 ~ 429 (437)
.
T Consensus 101 ~ 101 (124)
T 2e5i_A 101 P 101 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 360
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.96 E-value=2.2e-09 Score=89.87 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=57.3
Q ss_pred ccccEEEEEcCCc-----cCCHHHHHHHhhhcCCceEEEEEeccC---CCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 351 MCARTIYCTNIDK-----KVTQADVKLFFESVCGEVYRLRLLGDY---HHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 351 ~~~~tL~V~NLp~-----~vteedLrelF~~f~G~I~~v~i~kd~---g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
.++++|+|+||.. +-++++|+++|++| |.|.+|.|+++. ++++|||||+|.+.++|.+|+...++.....
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~-G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY-GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG-SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc-CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4568999999963 23789999999996 999999999873 5789999999999999999987766644433
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=4.2e-09 Score=87.59 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=54.9
Q ss_pred ccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccCC
Q 013726 266 QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (437)
Q Consensus 266 ~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~~ 332 (437)
..+|+++|+++|++||.|.+|+++. .++|||||+|.+.++|..|++ +++ +.|++|.|.+++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 4689999999999999999999983 457999999999999999999 555 5799999999763
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=2.8e-09 Score=88.66 Aligned_cols=63 Identities=24% Similarity=0.264 Sum_probs=53.9
Q ss_pred ccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCchhhhhhh
Q 013726 363 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNPSIAWLEE 429 (437)
Q Consensus 363 ~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~~i~~~~~ 429 (437)
..+|+++|+++|++| |.|..|.|+ ++++|||||+|.+.++|.+|+...+.+..+...|.|++.
T Consensus 27 ~~~te~~L~~~F~~~-G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY-GEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTT-SCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhc-CCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccC
Confidence 568999999999995 999999998 468899999999999999999887666555556888764
No 363
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.90 E-value=1.9e-09 Score=92.38 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=56.8
Q ss_pred ccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccCc--hhhhhh
Q 013726 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHNP--SIAWLE 428 (437)
Q Consensus 351 ~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~~--~i~~~~ 428 (437)
...++|||+|+ ++|+++|+++|++| |.|.+|.+. .++|||||+|.+.++|.+|+...+...+... .+.|+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~-G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF-GNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT-CCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc-CCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 35689999996 69999999999995 999999996 5678999999999999999866554433332 455654
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.89 E-value=4.1e-09 Score=89.70 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=64.0
Q ss_pred cCCcEEEEecCCc----------cchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeee
Q 013726 254 IIRRTVYVSDIDQ----------QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF 322 (437)
Q Consensus 254 ~~~rtLfVgNLp~----------~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~G 322 (437)
..++.|.+.|+=. .-.+++|++.|++||.|.+|.+.++ +++|+|||+|.+.++|.+|+. |||..++|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~--~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN--SAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT--CTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3567788888732 1234689999999999999999655 358999999999999999999 99999999
Q ss_pred eeeEEeccC
Q 013726 323 YPVRVLPSK 331 (437)
Q Consensus 323 r~L~V~~s~ 331 (437)
+.|.|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999864
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.82 E-value=3.6e-09 Score=101.39 Aligned_cols=63 Identities=21% Similarity=0.360 Sum_probs=55.1
Q ss_pred cccEEEEEcCCccC---------CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 352 CARTIYCTNIDKKV---------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 352 ~~~tL~V~NLp~~v---------teedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
..++|||+||+..+ ++++|+++|++| |+|.+|+|+. ++|||||+|.+.++|+.|+..++...+
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f-G~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL-GDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT-SCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHcc-CCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 45899999999998 799999999995 9999999986 477999999999999888876665444
No 366
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=7.7e-09 Score=85.05 Aligned_cols=71 Identities=11% Similarity=0.172 Sum_probs=54.5
Q ss_pred cEEEEEcCCccCCHHH----HHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCce-ecc-Cchhhh
Q 013726 354 RTIYCTNIDKKVTQAD----VKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFY-ILH-NPSIAW 426 (437)
Q Consensus 354 ~tL~V~NLp~~vteed----LrelF~~f~G-~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~-~~~-~~~i~~ 426 (437)
+.|||+|||+.+++++ |+++|++ || +|..| .+ |+|||.|.+.++|.+|+..++.. +.. ...|.|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~V-----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLSI-----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEEC-----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEEE-----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 4599999999999988 5589999 66 99998 22 89999999999998888655553 222 225777
Q ss_pred hhhhcCC
Q 013726 427 LEEFSGE 433 (437)
Q Consensus 427 ~~~~sg~ 433 (437)
|.+-+.-
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 7765543
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.78 E-value=7.7e-09 Score=104.07 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=55.4
Q ss_pred cccccEEEEEc--CCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCcee
Q 013726 350 EMCARTIYCTN--IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYI 418 (437)
Q Consensus 350 ~~~~~tL~V~N--Lp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~ 418 (437)
..++++|||+| |++.+|+++|+++|++| |+|.+|.++. +||||||+|.+.++|++|+..+++..
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~-G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKC-GLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTT-SCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhc-CCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 34568999999 57899999999999995 9999998865 47899999999999999988877643
No 368
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=1.5e-08 Score=85.20 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=58.0
Q ss_pred cccccEEEEEcCCccC-----------CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCcee
Q 013726 350 EMCARTIYCTNIDKKV-----------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYI 418 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~v-----------teedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~ 418 (437)
...+++|+|+||.... ++++|+++|++| |.|..|.|. +. .++|||||+|.+.++|.+|+...+...
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~-G~v~~v~i~-~~-~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF-GQIRKLLLF-DR-HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT-SCCSEEEEE-TT-CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc-CCEeEEEEe-cC-CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3456899999994332 268999999995 999999773 32 389999999999999999997777654
Q ss_pred ccCc--hhhhhhh
Q 013726 419 LHNP--SIAWLEE 429 (437)
Q Consensus 419 ~~~~--~i~~~~~ 429 (437)
+... .+.|+..
T Consensus 89 ~~gr~l~v~~a~~ 101 (112)
T 2dit_A 89 FGGRQITAQAWDG 101 (112)
T ss_dssp ETTEECEEEECCS
T ss_pred ECCcEEEEEEeCC
Confidence 4333 3555543
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.74 E-value=1.5e-08 Score=84.80 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=56.8
Q ss_pred cccEEEEEcC--CccCC--------HHHHHHHhhhcCCceEEEEEeccC----CCcceEEEEEeCCHHHHHHHHhhcCce
Q 013726 352 CARTIYCTNI--DKKVT--------QADVKLFFESVCGEVYRLRLLGDY----HHSTRIAFVEFVMVIASSTLFIHTEFY 417 (437)
Q Consensus 352 ~~~tL~V~NL--p~~vt--------eedLrelF~~f~G~I~~v~i~kd~----g~srGfAFVeF~s~e~A~kal~~~~~~ 417 (437)
+++.|.|.|+ |.++. ++||++.|++| |.|.+|.|+++. +.++|+|||+|.+.++|.+|+..+++.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~-G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY-GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT-SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc-CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4689999998 44443 47999999995 999999999883 257999999999999999998877765
Q ss_pred eccCc
Q 013726 418 ILHNP 422 (437)
Q Consensus 418 ~~~~~ 422 (437)
.....
T Consensus 83 ~f~GR 87 (105)
T 3v4m_A 83 KFANR 87 (105)
T ss_dssp EETTE
T ss_pred EeCCC
Confidence 54443
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.72 E-value=5.8e-09 Score=87.07 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=50.3
Q ss_pred EEcCCccCCHHHHHHHh------------hhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 358 CTNIDKKVTQADVKLFF------------ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 358 V~NLp~~vteedLrelF------------~~f~G~I~~v~i~kd-~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
+.||+..+++++|++.| ++| |.|.+|.|+++ .++++|||||+|.+.++|.+|+...++.....
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~-G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY-GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC-CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 45677777777777666 995 99999999988 56799999999999999999988766644433
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.68 E-value=4.2e-08 Score=83.87 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=56.1
Q ss_pred ccccEEEEEcCC--ccC---CHHHHHHHhhhcCCceEEEEEeccC------CCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 351 MCARTIYCTNID--KKV---TQADVKLFFESVCGEVYRLRLLGDY------HHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 351 ~~~~tL~V~NLp--~~v---teedLrelF~~f~G~I~~v~i~kd~------g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
.++++|+|+|+- .++ -++||++.|++| |.|.+|.|+++. +.++|+|||+|.+.++|.+|+...++...
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~-G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKF-GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTT-SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 367899999993 233 368999999995 999999999872 34789999999999999999887776444
Q ss_pred cC
Q 013726 420 HN 421 (437)
Q Consensus 420 ~~ 421 (437)
..
T Consensus 97 ~G 98 (118)
T 3ue2_A 97 AG 98 (118)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=4.8e-08 Score=79.62 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=59.6
Q ss_pred CcEEEEecCCc----cchH----HHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEE
Q 013726 256 RRTVYVSDIDQ----QVTE----EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRV 327 (437)
Q Consensus 256 ~rtLfVgNLp~----~~te----e~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V 327 (437)
..||+|.-.+. ++-+ .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|++|||..++|+.|+|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTITI 80 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEEEE
Confidence 35777776652 2323 5688999999999999998864 89999999999999999999999999999
Q ss_pred eccC
Q 013726 328 LPSK 331 (437)
Q Consensus 328 ~~s~ 331 (437)
..++
T Consensus 81 ~lkt 84 (91)
T 2dnr_A 81 ALKS 84 (91)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9876
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=7.7e-08 Score=82.70 Aligned_cols=73 Identities=16% Similarity=0.054 Sum_probs=64.5
Q ss_pred cCCcEEEEecCCcc-chHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcC-HHHHHHHHH-h--cCeEeeeeeeEEe
Q 013726 254 IIRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTD-EEGARAALN-L--AGTMLGFYPVRVL 328 (437)
Q Consensus 254 ~~~rtLfVgNLp~~-~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~-~e~A~~Al~-l--ng~~l~Gr~L~V~ 328 (437)
.....|||+||+.. ++.++|+++|++||.|..|.+..+.. .|||.|.+ .++|..|++ + ++..|.|..+.+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 34578999999999 99999999999999999999988876 79999999 899999998 8 4778888888876
Q ss_pred cc
Q 013726 329 PS 330 (437)
Q Consensus 329 ~s 330 (437)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 374
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=1.6e-07 Score=77.03 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=60.4
Q ss_pred CCcEEEEecCCcc-----chH----HHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeee
Q 013726 255 IRRTVYVSDIDQQ-----VTE----EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPV 325 (437)
Q Consensus 255 ~~rtLfVgNLp~~-----~te----e~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L 325 (437)
...||+|.-++.. +-+ .+|.+.|.+||.|..+++..|+ +||+|.+.++|.+|++|+|..++|+.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~L 87 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRAV 87 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeEE
Confidence 3468999888632 222 4688999999999999999875 999999999999999999999999999
Q ss_pred EEeccC
Q 013726 326 RVLPSK 331 (437)
Q Consensus 326 ~V~~s~ 331 (437)
+|....
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 998753
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=7.4e-07 Score=76.58 Aligned_cols=58 Identities=9% Similarity=0.095 Sum_probs=51.4
Q ss_pred cccEEEEEcCCcc-CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCC-HHHHHHHHhhc
Q 013726 352 CARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM-VIASSTLFIHT 414 (437)
Q Consensus 352 ~~~tL~V~NLp~~-vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s-~e~A~kal~~~ 414 (437)
....|+|+||+.+ +++++|+++|++| |+|.+|.+.++.. .|||+|.+ .++|.+++...
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~-G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNH-GEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSS-CCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHT
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhc-CCEEEEEEecCCC----EEEEEECCChHHHHHHHHHh
Confidence 4589999999999 9999999999995 9999999998766 69999999 78887776654
No 376
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.37 E-value=6.5e-07 Score=76.03 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=53.0
Q ss_pred cccEEEEEcCCc--c--------CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 352 CARTIYCTNIDK--K--------VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 352 ~~~tL~V~NLp~--~--------vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
++++|.++|+=. + --++||++.|++| |.|.+|.|.++. ++|+|||+|.+.++|.+|+..+++.....
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf-G~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH-GGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT-TCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc-CCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 457899999832 2 1246899999995 999999998764 58999999999999999988777644443
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.26 E-value=1.1e-06 Score=82.07 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=56.4
Q ss_pred hHHHHHHHHhcCCCeeEEEEeeCCC------CCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEeccC
Q 013726 269 TEEQLAALFVGCGQVVDCRICGDPN------SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (437)
Q Consensus 269 tee~L~~~F~~~G~I~~vri~~d~~------~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s~ 331 (437)
.+++|++.|++||.|.++.++.+.. .++|++||+|.+.++|.+|+. |+|..++||.|.+.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 5678999999999999999985543 358999999999999999999 99999999999998863
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.77 E-value=7.3e-05 Score=62.68 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=65.9
Q ss_pred ccCCcEEEEecCCccchHHHHHHHHhcC-----CCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHH-HhcCeEeeeeeeE
Q 013726 253 EIIRRTVYVSDIDQQVTEEQLAALFVGC-----GQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL-NLAGTMLGFYPVR 326 (437)
Q Consensus 253 ~~~~rtLfVgNLp~~~tee~L~~~F~~~-----G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al-~lng~~l~Gr~L~ 326 (437)
....++|-+-|||-.+++..|+.+.+.+ |.+..+.+..|- +-|+|+|.+...|.+|. .|+|..|+|++|+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 3457899999999999999999999999 999999998875 47999999999999986 5999999999999
Q ss_pred Eec
Q 013726 327 VLP 329 (437)
Q Consensus 327 V~~ 329 (437)
+..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 865
No 379
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.00022 Score=59.09 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=71.9
Q ss_pred CCcEEEEecCCccchHHHHHHHHhc-----CCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeeeeeeEEec
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVG-----CGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 329 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~-----~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~Gr~L~V~~ 329 (437)
...+|.|.|||+.+.++.|.-.|+. -|+|.++.... +-|+|+|.+.+.|++.|+-..+.|.+.+|.|.+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 4578999999999999999999986 26888887754 379999999999999999768889999999987
Q ss_pred cCCCCCCCCCCCCCCChhhhcccccEEEEEcCCccCC
Q 013726 330 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 366 (437)
Q Consensus 330 s~~~~~~~~~~~~pr~~~~~~~~~~tL~V~NLp~~vt 366 (437)
.- .....+|.+++|++.++
T Consensus 81 ~~------------------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 81 AP------------------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp CC------------------CCCCCCCCCCSCCCCCC
T ss_pred CC------------------CCCcceEeeecCCCCCC
Confidence 42 11236788888887654
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.46 E-value=0.00018 Score=66.85 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=44.7
Q ss_pred CCHHHHHHHhhhcCCceEEEEEecc------CCCcceEEEEEeCCHHHHHHHHhhcCceec
Q 013726 365 VTQADVKLFFESVCGEVYRLRLLGD------YHHSTRIAFVEFVMVIASSTLFIHTEFYIL 419 (437)
Q Consensus 365 vteedLrelF~~f~G~I~~v~i~kd------~g~srGfAFVeF~s~e~A~kal~~~~~~~~ 419 (437)
-.+++|++.|++| |.|.++.|+++ .+.++|++||+|.+.++|.+|+...++-..
T Consensus 141 e~~~dl~~e~~~~-G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 141 DLEGEVTEECGKF-GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp THHHHHHHHHTTT-SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHcc-CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 3568999999995 99999999865 237899999999999999888777665433
No 381
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.29 E-value=0.00052 Score=55.74 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=45.2
Q ss_pred ccEEEEEcCC----ccCCH----HHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCcee
Q 013726 353 ARTIYCTNID----KKVTQ----ADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYI 418 (437)
Q Consensus 353 ~~tL~V~NLp----~~vte----edLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~ 418 (437)
..||+|.-.+ .++-+ .+|.+.|++| |+|..+++..+. +||+|.+.++|.+|+. ++.+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~-G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~-mnG~~ 72 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASF-GEVILIRFVEDK------MWVTFLEGSSALNVLS-LNGKE 72 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT-CCEEEEEECSSS------EEEEESSHHHHHHGGG-GTTCE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhC-CCeEEEEEecCC------EEEEECChHHHHHHHh-cCCeE
Confidence 3688887766 23333 6788999995 999999999864 8999999999999998 55443
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.90 E-value=0.00088 Score=54.76 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=47.4
Q ss_pred cccEEEEEcCCcc-----CCH----HHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 352 CARTIYCTNIDKK-----VTQ----ADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 352 ~~~tL~V~NLp~~-----vte----edLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
+..||+|.-++.. +-+ .+|.+.|++| |+|..+++..+. +||+|.+.++|.+|+. ++.+.+.
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~-G~Vilvr~v~d~------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY-GTIVLVRINQGQ------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH-SCCSEEEEETTE------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC-CCEEEEEEecCc------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 3479999988632 222 5688999995 999999999874 9999999999999998 5554333
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.54 E-value=0.0072 Score=50.13 Aligned_cols=73 Identities=12% Similarity=0.055 Sum_probs=60.5
Q ss_pred CCcEEEEecCCccc-h----HHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEe
Q 013726 255 IRRTVYVSDIDQQV-T----EEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (437)
Q Consensus 255 ~~rtLfVgNLp~~~-t----ee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~ 328 (437)
...||+|.||+.++ + .+.++++|..|+++......+.= +=..|.|.++++|.+|-. |++..+.|+.++|.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 45789999999875 2 25778999999998887665332 356899999999999977 99999999999999
Q ss_pred ccC
Q 013726 329 PSK 331 (437)
Q Consensus 329 ~s~ 331 (437)
.+.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 875
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.0077 Score=50.50 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=53.3
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcC-----CceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVC-----GEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~-----G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
.++|-+-|||.++++..|+.+.++ + |.|..+.+..|.+ =|+|+|.+...|-+|....+++...
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~-~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQE-EIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHH-HTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEET
T ss_pred CcEEEEecCCCCCCHHHHHHHHhh-hhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeec
Confidence 489999999999999999999998 7 9999999999865 4999999999996666555554433
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.35 E-value=0.0096 Score=48.81 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=45.8
Q ss_pred CCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH
Q 013726 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN 314 (437)
Q Consensus 255 ~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~ 314 (437)
....+++ ++|+++...||.++|+.||.| .|+++.|. -|||.|.+++.|..|+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-----sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-----EEEEECSCHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-----eEEEEecCHHHHHHHHH
Confidence 3355666 999999999999999999965 47887764 79999999999999998
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.24 E-value=0.019 Score=46.57 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=54.5
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC----CceEEEEEEcCHHHHHHHHH-hcCeEeee
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS----VLRFAFIEFTDEEGARAALN-LAGTMLGF 322 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~----s~GfaFVeF~~~e~A~~Al~-lng~~l~G 322 (437)
+.|.|++||+++|++++.+.+.....+.....+..+.+ .-.-|||.|.+.+++....+ ++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 46899999999999999999999888776666554422 25679999999999999988 99998743
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.15 E-value=0.025 Score=48.05 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=58.8
Q ss_pred cCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEeee-eeeEEecc
Q 013726 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGF-YPVRVLPS 330 (437)
Q Consensus 254 ~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~G-r~L~V~~s 330 (437)
...+-|.|-+.|+.. ...+...|++||.|.+..... ...+-.|.|.+..+|++||..||..++| --|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 346789999999986 466778899999999887622 2359999999999999999999999975 56777664
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.10 E-value=0.032 Score=46.18 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=50.5
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhc----CCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhh-cCce
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESV----CGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIH-TEFY 417 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f----~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~-~~~~ 417 (437)
...+|.|.|||..++++.|.-+|+.- =|+|.++.... +-|+|+|.+.+.|+++|+. .|.+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L 71 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHEL 71 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCccee
Confidence 34799999999999999999999962 36899988765 3699999999999999999 4443
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.68 E-value=0.037 Score=44.78 Aligned_cols=67 Identities=9% Similarity=0.120 Sum_probs=51.3
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccC---C-CcceEEEEEeCCHHHHHHHHhhcCceeccC
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---H-HSTRIAFVEFVMVIASSTLFIHTEFYILHN 421 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~---g-~srGfAFVeF~s~e~A~kal~~~~~~~~~~ 421 (437)
++|.|++||+.+||+++.+.++.. ..+......... + ..-.-|||.|.+.+++......-+++.-.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~-~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM-PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC-CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc-ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 589999999999999999999996 887777665431 2 233569999999999877766666554443
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.84 E-value=0.034 Score=45.66 Aligned_cols=52 Identities=21% Similarity=0.336 Sum_probs=44.7
Q ss_pred EEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hc
Q 013726 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA 316 (437)
Q Consensus 258 tLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-ln 316 (437)
.++| ++|+++...||.++|+.||. ..|+++.|. -|||.|.+++.|..|+. +.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 3555 99999999999999999994 458888774 79999999999999998 53
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.62 E-value=0.049 Score=44.61 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=42.1
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhh
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIH 413 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~ 413 (437)
..++| ++|.++...||.++|++| |.| .|+.+.|+ -|||.|.+++.|..|+.+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~f-ggv-~I~WidDT-----sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAF-GNI-QISWIDDT-----SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTT-CSC-CCEEEETT-----EEEEECSCHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhcc-CCE-EEEEEcCC-----eEEEEecCHHHHHHHHHh
Confidence 56777 999999999999999995 844 35555554 499999999999777664
No 392
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.51 E-value=0.012 Score=61.04 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=50.6
Q ss_pred hhhhccCCcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHHhcCeEee
Q 013726 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLG 321 (437)
Q Consensus 249 ~~~~~~~~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~lng~~l~ 321 (437)
..+.....|+|+|. .|..+++.+|.+.|++||+|.++.+-.+.. -|+.|||.+.+++..++...+....
T Consensus 46 ~~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~~p~~ 114 (464)
T 3pq1_A 46 NERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTHTPXX 114 (464)
T ss_dssp HHHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCCCCCC
T ss_pred HHHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccCCCcc
Confidence 34566778999997 799999999999999999999998865543 6999999999999988764443333
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.83 E-value=0.3 Score=41.38 Aligned_cols=63 Identities=5% Similarity=0.021 Sum_probs=51.6
Q ss_pred cccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 352 ~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
..+.|.|-+.|... ...|...|++ ||+|......... .+-.|.|.+..+|++||..+...+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~-~G~Iv~~~~~~~~----NWihI~Y~s~~~A~rAL~kNG~ii~g 85 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQ-YGNILKHVMSNTG----NWMHIRYQSKLQARKALSKDGRIFGE 85 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHT-TSCEEEEEECSSS----SEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHh-hCcEEEeccCCCC----CeEEEEeCCHHHHHHHHHhCCeEecC
Confidence 35799999999985 6678888998 5999998873222 38999999999999999998876653
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.78 E-value=0.064 Score=44.05 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=41.7
Q ss_pred cEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhh
Q 013726 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIH 413 (437)
Q Consensus 354 ~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~ 413 (437)
..++| ++|.++...||.++|++| |. ..|+.+.|+ -|||.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~f-gg-v~I~WidDT-----sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAF-GN-IQISWIDDT-----SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTS-EE-EEEEEEETT-----EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhcc-CC-EEEEEEcCC-----eEEEEecCHHHHHHHHHh
Confidence 45666 999999999999999995 83 346666554 499999999988777764
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.78 E-value=0.024 Score=58.84 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=47.1
Q ss_pred cccccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcC
Q 013726 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTE 415 (437)
Q Consensus 350 ~~~~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~ 415 (437)
....++|+|. .|...++.+|.++|++| |.|.++.+-++.| -||.|+|.+.+++.+++....
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~-g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQF-GPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGG-SCCCCEEEECSSS---EEEEEECC---CCHHHHSSCC
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhc-CCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccC
Confidence 4456899998 79999999999999996 9999999887766 499999999999998876654
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.50 E-value=0.089 Score=45.37 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=54.7
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEE-Eee----------CCC-----CCceEEEEEEcCHHHHHHHHHhcCeEe
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCR-ICG----------DPN-----SVLRFAFIEFTDEEGARAALNLAGTML 320 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vr-i~~----------d~~-----~s~GfaFVeF~~~e~A~~Al~lng~~l 320 (437)
.-|.|-+.|++.+ ..+.+.|++||.|.+-. ... ..+ ++.++-.|.|.++.+|.+||..||..+
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 5678889987766 45667899999987621 110 000 124588999999999999999999999
Q ss_pred eeeeeEEeccC
Q 013726 321 GFYPVRVLPSK 331 (437)
Q Consensus 321 ~Gr~L~V~~s~ 331 (437)
.|.-|-|.+.+
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99888887753
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.81 E-value=0.093 Score=42.93 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=48.4
Q ss_pred CcEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCC----CceEEEEEEcCHHHHHHHHH-hcCeEeee
Q 013726 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS----VLRFAFIEFTDEEGARAALN-LAGTMLGF 322 (437)
Q Consensus 256 ~rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~----s~GfaFVeF~~~e~A~~Al~-lng~~l~G 322 (437)
+-.|.|+.||+++|++++.+.+...-.+.....+..+.+ .-.-|||.|.+.++...-.+ ++|..+-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 456999999999999998877766544332222222211 14578999999999999998 99998743
No 398
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.35 E-value=0.28 Score=40.60 Aligned_cols=64 Identities=6% Similarity=0.118 Sum_probs=51.0
Q ss_pred cccEEEEEcCCccC-C----HHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 352 CARTIYCTNIDKKV-T----QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 352 ~~~tL~V~NLp~~v-t----eedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
..++|+|.||+.++ . ++.++++|.+| +++......+... =..|.|.+.++|.+|-...|..-.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~-~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~ 72 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTY-DKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFL 72 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTT-CSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEET
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhh-CcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceec
Confidence 35799999999865 2 36789999996 9999998888766 3679999999998887777765433
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=90.45 E-value=0.3 Score=39.89 Aligned_cols=67 Identities=9% Similarity=0.067 Sum_probs=45.5
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEecc---CC-CcceEEEEEeCCHHHHHHHHhhcCceecc
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD---YH-HSTRIAFVEFVMVIASSTLFIHTEFYILH 420 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd---~g-~srGfAFVeF~s~e~A~kal~~~~~~~~~ 420 (437)
+-+|.|+.||+.+||+++.+.++.. =++........ .+ ..-.-|||.|.+.++.......-+++.-.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~-~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPL-PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCC-SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCc-CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 3589999999999999998888875 34433332221 11 12235899999999987766665555433
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=68.81 E-value=7.3 Score=40.62 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=44.2
Q ss_pred cEEEEecCCccchHHHHHHHHhcCCCeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hc
Q 013726 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA 316 (437)
Q Consensus 257 rtLfVgNLp~~~tee~L~~~F~~~G~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-ln 316 (437)
..++|+ +|..+...+|.++|+.||. .+|+++.+. .|||.|.+.+.|..++. +.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-----EEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-----eEEEEECCHHHHHHHHHHHH
Confidence 467776 8999999999999999995 457766553 79999999999999998 64
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=64.36 E-value=6.5 Score=33.71 Aligned_cols=66 Identities=8% Similarity=0.125 Sum_probs=46.1
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEE-EEEecc--------------CC-CcceEEEEEeCCHHHHHHHHhhcCc
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYR-LRLLGD--------------YH-HSTRIAFVEFVMVIASSTLFIHTEF 416 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~-v~i~kd--------------~g-~srGfAFVeF~s~e~A~kal~~~~~ 416 (437)
..-|.|-+.|.+.+ ..+.+.|+++ |.|.. +...++ .. ....+-.|+|.+..+|.+||..+..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~-G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEF-GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGG-SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhh-ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 36788899977655 5677889985 99866 222210 11 1245889999999999999998887
Q ss_pred eecc
Q 013726 417 YILH 420 (437)
Q Consensus 417 ~~~~ 420 (437)
.+..
T Consensus 85 ii~G 88 (132)
T 3p3d_A 85 VFNG 88 (132)
T ss_dssp EETT
T ss_pred EeCc
Confidence 6543
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=59.93 E-value=17 Score=37.79 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=41.3
Q ss_pred ccEEEEEcCCccCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHhhc
Q 013726 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMVIASSTLFIHT 414 (437)
Q Consensus 353 ~~tL~V~NLp~~vteedLrelF~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal~~~ 414 (437)
...++|+ +|..+...+|.++|+.| |.+ +|+.+.++ .|||.|.+.+.|..++...
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f-g~v-~V~widdt-----~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF-GNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG-CCC-EEEECSSS-----EEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc-CCE-EEEEEcCC-----eEEEEECCHHHHHHHHHHH
Confidence 4577776 99999999999999995 854 45554443 4999999999997665543
No 403
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=36.73 E-value=22 Score=28.91 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=31.2
Q ss_pred ccCCHHHHHHHhhhcCCc---eEEE-EEeccCC--CcceEEEEEeCCHHHHHHH
Q 013726 363 KKVTQADVKLFFESVCGE---VYRL-RLLGDYH--HSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 363 ~~vteedLrelF~~f~G~---I~~v-~i~kd~g--~srGfAFVeF~s~e~A~ka 410 (437)
.+.+..+|++-+.+.|+. +..| .+...+| +++|||.| |++.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 577888999888766553 3333 2222344 58889976 8888888654
No 404
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=32.73 E-value=26 Score=28.83 Aligned_cols=47 Identities=11% Similarity=-0.047 Sum_probs=30.9
Q ss_pred ccCCHHHHHHHhhhcCCc---eEEE-EEeccCC--CcceEEEEEeCCHHHHHHH
Q 013726 363 KKVTQADVKLFFESVCGE---VYRL-RLLGDYH--HSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 363 ~~vteedLrelF~~f~G~---I~~v-~i~kd~g--~srGfAFVeF~s~e~A~ka 410 (437)
.+.+..+|++-..+.|+. +..| .+...+| +++|||.| |++.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 467888888877766553 2333 2223344 58899977 8998888654
No 405
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=32.02 E-value=23 Score=28.85 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=30.3
Q ss_pred ccCCHHHHHHHhhhcCCc---eEEE-EEeccCC--CcceEEEEEeCCHHHHHH
Q 013726 363 KKVTQADVKLFFESVCGE---VYRL-RLLGDYH--HSTRIAFVEFVMVIASST 409 (437)
Q Consensus 363 ~~vteedLrelF~~f~G~---I~~v-~i~kd~g--~srGfAFVeF~s~e~A~k 409 (437)
.+.+..+|++-+.+.|+. +..| .+...+| +++|||.| |++.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 577888888877765553 2333 2222344 58899977 888888854
No 406
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.20 E-value=1.3e+02 Score=23.63 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=40.0
Q ss_pred EEEEEcCCccCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHH
Q 013726 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 355 tL~V~NLp~~vteedLrelF~~f~G-~I~~v~i~kd~g~srGfAFVeF~s~e~A~ka 410 (437)
.-|+-.++..++..+|++.++++|| .|..|........ .--|+|.+..-.+|...
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~-~KKA~V~L~~~~~a~dv 79 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG-EKKAYVKLKPEYSASEV 79 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS-CEEEEEEECTTSCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC-ceEEEEEcCCCCcHHHH
Confidence 4555667889999999999999888 6777766554221 23699999887776544
No 407
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=28.83 E-value=42 Score=28.73 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=31.9
Q ss_pred ccCCHHHHHHHhhhcCCc---eEEEEEe-ccCC--CcceEEEEEeCCHHHHHHH
Q 013726 363 KKVTQADVKLFFESVCGE---VYRLRLL-GDYH--HSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 363 ~~vteedLrelF~~f~G~---I~~v~i~-kd~g--~srGfAFVeF~s~e~A~ka 410 (437)
.+.+..||++-+.+.|+. +..|.=+ ..+| .+.|||.| |++.+.|.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 468899999999877773 2333222 2244 58899977 8998888543
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=27.59 E-value=75 Score=28.29 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=41.8
Q ss_pred cEEEEecCCc-c--------chHHHHHHHH--hcCCCeeEEEEeeCCCCCceEEEEEEcC-HHHHHHHHHh
Q 013726 257 RTVYVSDIDQ-Q--------VTEEQLAALF--VGCGQVVDCRICGDPNSVLRFAFIEFTD-EEGARAALNL 315 (437)
Q Consensus 257 rtLfVgNLp~-~--------~tee~L~~~F--~~~G~I~~vri~~d~~~s~GfaFVeF~~-~e~A~~Al~l 315 (437)
-++.|-|+|. . .+..+|++.| +.|.++. ++...++....|++.|+|.+ ...-..|+.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence 3566777776 1 3457899977 8898865 66667777778999999985 5556666664
No 409
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=26.98 E-value=24 Score=28.55 Aligned_cols=47 Identities=6% Similarity=0.063 Sum_probs=28.8
Q ss_pred ccCCHHHHHHHhhhcCCceEEEEEecc----CC--CcceEEEEEeCCHHHHHHH
Q 013726 363 KKVTQADVKLFFESVCGEVYRLRLLGD----YH--HSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 363 ~~vteedLrelF~~f~G~I~~v~i~kd----~g--~srGfAFVeF~s~e~A~ka 410 (437)
.+.+..+|++-..+.|+.-..+.++.. +| +++|||.| |++.+.|++.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 467788888777765543233333322 33 48888876 7777777554
No 410
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=25.50 E-value=1.1e+02 Score=26.65 Aligned_cols=47 Identities=11% Similarity=0.014 Sum_probs=31.1
Q ss_pred ccCCHHHHHHHhhhcCCc---eEEEEEec-cCC--CcceEEEEEeCCHHHHHHH
Q 013726 363 KKVTQADVKLFFESVCGE---VYRLRLLG-DYH--HSTRIAFVEFVMVIASSTL 410 (437)
Q Consensus 363 ~~vteedLrelF~~f~G~---I~~v~i~k-d~g--~srGfAFVeF~s~e~A~ka 410 (437)
.+.+..||++-+.+.|+. +..|.=++ .+| .+.|||.| |++.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 477888998888765553 23332222 344 48899987 8999888543
No 411
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=24.13 E-value=94 Score=27.62 Aligned_cols=50 Identities=20% Similarity=0.164 Sum_probs=35.3
Q ss_pred cEEEEEcCCc-c--------CCHHHHHHHh--hhcCCceEEEEEeccCCCcceEEEEEeCCHH
Q 013726 354 RTIYCTNIDK-K--------VTQADVKLFF--ESVCGEVYRLRLLGDYHHSTRIAFVEFVMVI 405 (437)
Q Consensus 354 ~tL~V~NLp~-~--------vteedLrelF--~~f~G~I~~v~i~kd~g~srGfAFVeF~s~e 405 (437)
-+++|-|+|. . .+..+|++.| ..| .++. |+.+.....++|+|.|+|...-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F-~p~k-v~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGF-NPTR-VRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTC-CCSE-EEEEECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCC-CCce-eEecccCCCCceeEEEEecCCh
Confidence 4677888886 2 3457899977 886 6666 4444444447899999998853
No 412
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=20.87 E-value=1.6e+02 Score=22.89 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=40.1
Q ss_pred EEEEEcCCccCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 013726 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMVIASSTLF 411 (437)
Q Consensus 355 tL~V~NLp~~vteedLrelF~~f~G-~I~~v~i~kd~g~srGfAFVeF~s~e~A~kal 411 (437)
.-|+-.++..++..+|++.++++|| .|..|....... ..--|+|.+....+|..++
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-GEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SSEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-CceEEEEEECCCCcHHHHH
Confidence 4556668899999999999998877 677776554322 1236999998777665544
No 413
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=20.85 E-value=1.5e+02 Score=21.68 Aligned_cols=57 Identities=9% Similarity=0.121 Sum_probs=35.5
Q ss_pred cchHHHHHHHHhcCC-----CeeEEEEeeCCCCCceEEEEEEcCHHHHHHHHH-hcCeEeeeeeeEEecc
Q 013726 267 QVTEEQLAALFVGCG-----QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (437)
Q Consensus 267 ~~tee~L~~~F~~~G-----~I~~vri~~d~~~s~GfaFVeF~~~e~A~~Al~-lng~~l~Gr~L~V~~s 330 (437)
.++..+|..++..-+ .|-.+.+.. .|.||+-.. +.+..++. |++..+.|+.+.|..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 466677778777544 344455532 388999865 45667777 9999999999988765
Done!