AmiGO: BLAST Results


BLAST match view associations BLAST with AT5G60990 AT5G60990 AT5G60990	protein from Arabidopsis thaliana	1.1e-156
BLAST match view associations BLAST with Ddx47 Ddx47 Ddx47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein from Mus musculus	4.9e-124
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Bos taurus	7.2e-123
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Homo sapiens	1.9e-122
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Canis lupus familiaris	3.1e-122
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Gallus gallus	2.0e-120
BLAST match view associations BLAST with CG9253 CG9253 CG9253	protein from Drosophila melanogaster	3.2e-120
BLAST match view associations BLAST with zgc:112350 zgc:112350 zgc:112350	gene_product from Danio rerio	9.8e-119
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Sus scrofa	4.2e-118
BLAST match view associations BLAST with T26G10.1 T26G10.1 T26G10.1	gene from Caenorhabditis elegans	1.8e-117
BLAST match view associations BLAST with ddx47 ddx47 ddx47 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.1e-113
BLAST match view associations BLAST with orf19.7546 orf19.7546 orf19.7546	gene_product from Candida albicans	1.7e-105
BLAST match view associations BLAST with RRP3 RRP3 RRP3 Protein involved in rRNA processing	gene from Saccharomyces cerevisiae	1.4e-96
BLAST match view associations BLAST with PFB0860c PFB0860c PFB0860c RNA helicase, putative	gene from Plasmodium falciparum	2.7e-91
BLAST match view associations BLAST with PFB0860c PFB0860c PFB0860c DEAD/DEAH box helicase, putative	protein from Plasmodium falciparum 3D7	2.7e-91
BLAST match view associations BLAST with ddx49 ddx49 ddx49 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	3.0e-85
BLAST match view associations BLAST with RH36 RH36 RH36 RNA helicase 36	protein from Arabidopsis thaliana	1.6e-77
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Probable ATP-dependent RNA helicase DDX49	protein from Homo sapiens	3.1e-76
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Sus scrofa	8.1e-76
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-75
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	3.5e-75
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	3.5e-75
BLAST match view associations BLAST with Ddx49 Ddx49 Ddx49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein from Mus musculus	7.3e-75
BLAST match view associations BLAST with Ddx49 Ddx49 Ddx49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	gene from Rattus norvegicus	1.2e-74
BLAST match view associations BLAST with ddx49 ddx49 ddx49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	gene_product from Danio rerio	1.6e-72
BLAST match view associations BLAST with H20J04.4 H20J04.4 H20J04.4	gene from Caenorhabditis elegans	1.1e-69
BLAST match view associations BLAST with DBP8 DBP8 DBP8	gene_product from Candida albicans	5.1e-67
BLAST match view associations BLAST with Dbp45A Dbp45A Dbp45A DEAD box protein 45A	protein from Drosophila melanogaster	2.9e-64
BLAST match view associations BLAST with DBP8 DBP8 DBP8 ATPase, putative RNA helicase	gene from Saccharomyces cerevisiae	4.8e-62
BLAST match view associations BLAST with DRS1 DRS1 DRS1 ATP-dependent RNA helicase DRS1	protein from Magnaporthe oryzae 70-15	3.3e-61
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus thuringiensis str. Al Hakam	4.3e-61
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus E33L	4.3e-61
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus thuringiensis serovar konkukian str. 97-27	4.3e-61
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus ATCC 10987	4.3e-61
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus ATCC 14579	4.3e-61
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus anthracis	4.3e-61
BLAST match view associations BLAST with BA_0247 BA_0247 BA_0247 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis str. Ames	4.3e-61
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Gallus gallus	1.5e-60
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-60
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-60
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Probable ATP-dependent RNA helicase DDX27	protein from Homo sapiens	2.4e-60
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD box family	protein from Vibrio cholerae O1 biovar El Tor str. N16961	2.4e-60
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Vibrio cholerae O1 biovar El Tor	2.4e-60
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Homo sapiens	2.9e-60
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Probable ATP-dependent RNA helicase DDX27	protein from Bos taurus	3.1e-60
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	3.9e-60
BLAST match view associations BLAST with AT4G16630 AT4G16630 AT4G16630	protein from Arabidopsis thaliana	5.0e-60
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor str. N16961	6.4e-60
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor	6.4e-60
BLAST match view associations BLAST with Ddx27 Ddx27 Ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein from Mus musculus	1.0e-59
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Gallus gallus	1.3e-59
BLAST match view associations BLAST with Y71G12B.8 Y71G12B.8 Y71G12B.8	gene from Caenorhabditis elegans	2.2e-59
BLAST match view associations BLAST with CPS_1125 CPS_1125 CPS_1125 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	3.5e-59
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Geobacillus kaustophilus HTA426	5.7e-59
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	gene_product from Danio rerio	7.3e-59
BLAST match view associations BLAST with rhlE_2 rhlE_2 rhlE_2 Putative ATP-dependent RNA helicase	protein from Pseudomonas protegens Pf-5	1.5e-58
BLAST match view associations BLAST with SO_4034 SO_4034 SO_4034 ATP-dependent RNA helicase DeaD	protein from Shewanella oneidensis MR-1	1.9e-58
BLAST match view associations BLAST with SO_3783 SO_3783 SO_3783 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	3.2e-58
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Escherichia coli K-12	4.0e-58
BLAST match view associations BLAST with deaD deaD deaD DeaD, DEAD-box RNA helicase	protein from Escherichia coli K-12	1.4e-57
BLAST match view associations BLAST with AT5G65900 AT5G65900 AT5G65900	protein from Arabidopsis thaliana	1.4e-57
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus licheniformis DSM 13 = ATCC 14580	1.7e-57
BLAST match view associations BLAST with ddx18 ddx18 ddx18 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	4.6e-57
BLAST match view associations BLAST with PSPPH_0449 PSPPH_0449 PSPPH_0449 ATP-dependent RNA helicase RhlE, putative	protein from Pseudomonas syringae pv. phaseolicola 1448A	4.6e-57
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Coxiella burnetii RSA 493	7.5e-57
BLAST match view associations BLAST with CBU_0670 CBU_0670 CBU_0670 ATP-dependent RNA helicase RhlE, putative	protein from Coxiella burnetii RSA 493	7.5e-57
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	gene from Plasmodium falciparum	1.2e-56
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	protein from Plasmodium falciparum 3D7	1.2e-56
BLAST match view associations BLAST with DRS1 DRS1 DRS1	gene_product from Candida albicans	1.6e-56
BLAST match view associations BLAST with DRS1 DRS1 DRS1 ATP-dependent RNA helicase DRS1	protein from Candida albicans SC5314	1.6e-56
BLAST match view associations BLAST with DRS1 DRS1 DRS1 Nucleolar DEAD-box protein required for ribosome assembly and function	gene from Saccharomyces cerevisiae	2.5e-56
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase RhlE	protein from Hyphomonas neptunium ATCC 15444	4.2e-56
BLAST match view associations BLAST with SO_1383 SO_1383 SO_1383 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	5.3e-56
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	8.6e-56
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	8.6e-56
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus subtilis subsp. subtilis str. 168	1.1e-55
BLAST match view associations BLAST with AT3G18600 AT3G18600 AT3G18600	protein from Arabidopsis thaliana	1.1e-55
BLAST match view associations BLAST with Rs1 Rs1 Rs1	protein from Drosophila melanogaster	1.4e-55
BLAST match view associations BLAST with GSU_0914 GSU_0914 GSU_0914 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	2.9e-55
BLAST match view associations BLAST with SPO_1443 SPO_1443 SPO_1443 ATP-dependent RNA helicase RhlE	protein from Ruegeria pomeroyi DSS-3	3.7e-55
BLAST match view associations BLAST with CHY_0229 CHY_0229 CHY_0229 ATP-dependent RNA helicase, DEAD box family	protein from Carboxydothermus hydrogenoformans Z-2901	4.8e-55
BLAST match view associations BLAST with CHY_0229 CHY_0229 CHY_0229 ATP-dependent RNA helicase, DEAD box family	protein from Carboxydothermus hydrogenoformans Z-2901	4.8e-55
BLAST match view associations BLAST with LOC100626268 LOC100626268 LOC100626268 Uncharacterized protein	protein from Sus scrofa	7.8e-55
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	1.6e-54
BLAST match view associations BLAST with VC_0660 VC_0660 VC_0660 ATP-dependent RNA helicase SrmB	protein from Vibrio cholerae O1 biovar El Tor str. N16961	1.6e-54
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	1.6e-54
BLAST match view associations BLAST with VC_0660 VC_0660 VC_0660 ATP-dependent RNA helicase SrmB	protein from Vibrio cholerae O1 biovar El Tor	1.6e-54
BLAST match view associations BLAST with orf19.5991 orf19.5991 orf19.5991	gene_product from Candida albicans	1.6e-54
BLAST match view associations BLAST with BAS5307 BAS5307 BAS5307 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis	4.3e-54
BLAST match view associations BLAST with BA_5703 BA_5703 BA_5703 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis str. Ames	4.3e-54
BLAST match view associations BLAST with HAS1 HAS1 HAS1 ATP-dependent RNA helicase	gene from Saccharomyces cerevisiae	4.3e-54
BLAST match view associations BLAST with deaD deaD deaD Cold-shock DEAD box protein A	protein from Pseudomonas protegens Pf-5	5.5e-54
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  013727
        (437 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi...  1527  1.1e-156  1
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo...  1219  4.9e-124  1
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1...  1219  4.9e-124  1
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R...  1208  7.2e-123  1
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R...  1204  1.9e-122  1
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"...  1202  3.1e-122  1
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"...  1185  2.0e-120  1
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m...  1183  3.2e-120  1
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"...  1169  9.8e-119  1
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"...  1163  4.2e-118  1
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh...  1157  1.8e-117  1
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli...  1101  2.1e-113  2
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R...  1100  2.0e-111  1
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer...  1089  2.9e-110  1
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ...  1044  1.7e-105  1
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr...   960  1.4e-96   1
GENEDB_PFALCIPARUM|PFB0860c - symbol:PFB0860c "RNA helica...   910  2.7e-91   1
UNIPROTKB|O96264 - symbol:PFB0860c "DEAD/DEAH box helicas...   910  2.7e-91   1
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli...   853  3.0e-85   1
TAIR|locus:2032910 - symbol:RH36 "RNA helicase 36" specie...   780  1.6e-77   1
UNIPROTKB|Q9Y6V7 - symbol:DDX49 "Probable ATP-dependent R...   768  3.1e-76   1
UNIPROTKB|F1S7D9 - symbol:DDX49 "Uncharacterized protein"...   764  8.1e-76   1
UNIPROTKB|E2RBM7 - symbol:DDX49 "Uncharacterized protein"...   762  1.3e-75   1
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"...   758  3.5e-75   1
UNIPROTKB|F1NYX0 - symbol:DDX49 "Uncharacterized protein"...   758  3.5e-75   1
MGI|MGI:2136689 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) bo...   755  7.3e-75   1
RGD|1311124 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box po...   753  1.2e-74   1
ZFIN|ZDB-GENE-031030-3 - symbol:ddx49 "DEAD (Asp-Glu-Ala-...   733  1.6e-72   1
WB|WBGene00019219 - symbol:H20J04.4 species:6239 "Caenorh...   706  1.1e-69   1
CGD|CAL0004058 - symbol:DBP8 species:5476 "Candida albica...   681  5.1e-67   1
POMBASE|SPBC543.06c - symbol:dbp8 "ATP-dependent RNA heli...   670  7.4e-66   1
FB|FBgn0010220 - symbol:Dbp45A "DEAD box protein 45A" spe...   655  2.9e-64   1
SGD|S000001212 - symbol:DBP8 "ATPase, putative RNA helica...   634  4.8e-62   1
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he...   627  2.7e-61   1
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas...   606  3.3e-61   2
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme...   625  4.3e-61   1
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN...   625  4.3e-61   1
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN...   625  4.3e-61   1
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN...   625  4.3e-61   1
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN...   625  4.3e-61   1
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN...   625  4.3e-61   1
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN...   625  4.3e-61   1
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli...   625  4.3e-61   1
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"...   620  1.5e-60   1
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"...   618  2.4e-60   1
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"...   618  2.4e-60   1
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R...   618  2.4e-60   1
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel...   618  2.4e-60   1
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he...   618  2.4e-60   1
UNIPROTKB|F5H1N9 - symbol:DDX47 "Probable ATP-dependent R...   465  2.9e-60   3
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R...   617  3.1e-60   1
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli...   616  3.9e-60   1
ASPGD|ASPL0000072637 - symbol:AN4903 species:162425 "Emer...   615  5.0e-60   1
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi...   615  5.0e-60   1
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel...   614  6.4e-60   1
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he...   614  6.4e-60   1
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo...   612  1.0e-59   1
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"...   611  1.3e-59   1
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor...   609  2.2e-59   1
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he...   607  3.5e-59   1
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN...   605  5.7e-59   1
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-...   604  7.3e-59   1
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ...   601  1.5e-58   1
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli...   600  1.9e-58   1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli...   598  3.2e-58   1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas...   597  4.0e-58   1
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica...   592  1.4e-57   1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi...   592  1.4e-57   1
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN...   591  1.7e-57   1
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli...   587  4.6e-57   1
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h...   587  4.6e-57   1
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas...   585  7.5e-57   1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he...   585  7.5e-57   1
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ...   583  1.2e-56   1
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep...   583  1.2e-56   1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica...   582  1.6e-56   1
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas...   582  1.6e-56   1
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ...   580  2.5e-56   1
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas...   578  4.2e-56   1
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli...   577  5.3e-56   1
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli...   575  8.6e-56   1
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli...   575  8.6e-56   1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN...   574  1.1e-55   1
TAIR|locus:2086909 - symbol:AT3G18600 species:3702 "Arabi...   574  1.1e-55   1
FB|FBgn0021995 - symbol:Rs1 "Rs1" species:7227 "Drosophil...   573  1.4e-55   1
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he...   570  2.9e-55   1
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he...   569  3.7e-55   1
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel...   568  4.8e-55   1
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he...   568  4.8e-55   1
UNIPROTKB|I3LQ10 - symbol:LOC100626268 "Uncharacterized p...   566  7.8e-55   1
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer...   563  1.6e-54   1
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel...   563  1.6e-54   1
UNIPROTKB|Q9KU63 - symbol:VC_0660 "ATP-dependent RNA heli...   563  1.6e-54   1
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he...   563  1.6e-54   1
TIGR_CMR|VC_0660 - symbol:VC_0660 "ATP-dependent RNA heli...   563  1.6e-54   1
CGD|CAL0003464 - symbol:orf19.5991 species:5476 "Candida ...   401  1.6e-54   2
UNIPROTKB|Q81JK1 - symbol:BAS5307 "ATP-dependent RNA heli...   559  4.3e-54   1
TIGR_CMR|BA_5703 - symbol:BA_5703 "ATP-dependent RNA heli...   559  4.3e-54   1
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"...   559  4.3e-54   1
UNIPROTKB|Q4K8U0 - symbol:deaD "Cold-shock DEAD box prote...   558  5.5e-54   1

WARNING:  Descriptions of 836 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2173517 [details] [associations]
            symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
            "pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
            IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
            ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
            PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
            KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
            PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
            GermOnline:AT5G60990 Uniprot:Q8GY84
        Length = 456

 Score = 1527 (542.6 bits), Expect = 1.1e-156, P = 1.1e-156
 Identities = 303/414 (73%), Positives = 344/414 (83%)

Query:     1 MAEEKEV-KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKT 59
             M EE EV KTF ELG+R+ELV+ACE +GWK PSKIQAEA+P ALEGKD+IGLAQTGSGKT
Sbjct:     1 MEEENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKT 60

Query:    60 GAFALPILQALLEIA------ENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRC 113
             GAFA+PILQALLE        + +R  PAFFACVLSPTRELAIQI+EQFEALG+ ISLRC
Sbjct:    61 GAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRC 120

Query:   114 AVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD 173
             AVLVGG+D MQQT+ALGKRPH++VATPGRL DH+++TKGFSL +LKYLVLDEADRLLN+D
Sbjct:   121 AVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNED 180

Query:   174 FEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYR 233
             FEKSL++IL  IP  R+T+LFSATMTKKV+KLQRACL+NPVKIEAASKYSTVDTLKQQYR
Sbjct:   181 FEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYR 240

Query:   234 FVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRL 293
             FV AKYKDCYLVYIL+E+  S++M+FTRTCD TR LAL+LR+LG RAIPISG M+QSKRL
Sbjct:   241 FVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRL 300

Query:   294 GALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXX 353
             GALNKFKAGECNIL+CTDVASRGLDIPSVD+VINYDIPTNSKDYIH              
Sbjct:   301 GALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVG 360

Query:   354 ISLVNQYELEWYLQIEKLIGKKXXXXXXXXXXXXXXXXXXXXXKRISQMTIKDS 407
             ISLVNQYELEWY+QIEKLIGKK                     K++S M +K+S
Sbjct:   361 ISLVNQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKES 414


>MGI|MGI:1915005 [details] [associations]
            symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
            process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
            GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
            GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
            GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
            OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
            EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
            ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
            PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
            Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
            InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
            Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
        Length = 455

 Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
 Identities = 242/374 (64%), Positives = 295/374 (78%)

Query:     2 AEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61
             AEE+E KTFK+LG+ D L EAC+ +GW  P+KIQ EAIP AL+G+D+IGLA+TGSGKTGA
Sbjct:    18 AEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGA 77

Query:    62 FALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 121
             FALPIL ALLE    QR     FA VL+PTRELA QISEQFEALGS I ++CAV+VGG+D
Sbjct:    78 FALPILNALLETP--QR----LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGID 131

Query:   122 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEI 181
              M Q+LAL K+PHIV+ATPGRL+DHL NTKGF+L  LKYLV+DEADR+LN DFE  +D+I
Sbjct:   132 SMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKI 191

Query:   182 LNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241
             L VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +SKY TV+ L+Q Y F+P+K+KD
Sbjct:   192 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKD 251

Query:   242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA 301
              YLVYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ G MSQSKRLG+LNKFKA
Sbjct:   252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKA 311

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYE 361
                +IL+ TDVASRGLDIP VD+V+N+DIPT+SKDYIH              I+ V QY+
Sbjct:   312 KARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYD 371

Query:   362 LEWYLQIEKLIGKK 375
             +E + +IE LIGKK
Sbjct:   372 VELFQRIEHLIGKK 385


>UNIPROTKB|G3V727 [details] [associations]
            symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
            GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
            RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
            GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
            Uniprot:G3V727
        Length = 455

 Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
 Identities = 242/374 (64%), Positives = 295/374 (78%)

Query:     2 AEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61
             AEE+E KTFK+LG+ D L EAC+ +GW  P+KIQ EAIP AL+G+D+IGLA+TGSGKTGA
Sbjct:    18 AEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGA 77

Query:    62 FALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 121
             FALPIL ALLE    QR     FA VL+PTRELA QISEQFEALGS I ++CAV+VGG+D
Sbjct:    78 FALPILNALLETP--QR----LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGID 131

Query:   122 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEI 181
              M Q+LAL K+PHIV+ATPGRL+DHL NTKGF+L  LKYLV+DEADR+LN DFE  +D+I
Sbjct:   132 SMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKI 191

Query:   182 LNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241
             L VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +SKY TV+ L+Q Y F+P+K+KD
Sbjct:   192 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKD 251

Query:   242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA 301
              YLVYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ G MSQSKRLG+LNKFKA
Sbjct:   252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKA 311

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYE 361
                +IL+ TDVASRGLDIP VD+V+N+DIPT+SKDYIH              I+ V QY+
Sbjct:   312 KARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYD 371

Query:   362 LEWYLQIEKLIGKK 375
             +E + +IE LIGKK
Sbjct:   372 VELFQRIEHLIGKK 385


>UNIPROTKB|Q29S22 [details] [associations]
            symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
            species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
            [GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
            process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
            IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
            ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
            Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
            HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
        Length = 457

 Score = 1208 (430.3 bits), Expect = 7.2e-123, P = 7.2e-123
 Identities = 240/373 (64%), Positives = 293/373 (78%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             E +E KTFK+LG+ D L EAC+ +GW  P+KIQ EAIP AL+G+D+IGLA+TGSGKTGAF
Sbjct:    21 EVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF 80

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
             ALPIL ALLE    QR     FA VL+PTRELA QISEQFEALGS I ++CAV+VGG+D 
Sbjct:    81 ALPILNALLETP--QR----LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDS 134

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
             M Q+LAL K+PHIV+ATPGRL+DHL NTKGF+L  LKYLV+DEADR+LN DFE  +D+IL
Sbjct:   135 MSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKIL 194

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242
              VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +SKY TV+ L+Q Y F+P+K+KD 
Sbjct:   195 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDT 254

Query:   243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
             YLVYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ G MSQSKRLG+LNKFKA 
Sbjct:   255 YLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAK 314

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
               +IL+ TDVASRGLDIP VD+V+N+DIPT+SKDYIH              I+ V QY++
Sbjct:   315 ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDV 374

Query:   363 EWYLQIEKLIGKK 375
             E + +IE LIGKK
Sbjct:   375 ELFQRIEHLIGKK 387


>UNIPROTKB|Q9H0S4 [details] [associations]
            symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
            [GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
            processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
            EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
            OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
            EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
            IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
            PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
            MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
            SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
            Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
            KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
            HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
            PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
            ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
            NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
            Genevestigator:Q9H0S4 Uniprot:Q9H0S4
        Length = 455

 Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
 Identities = 239/375 (63%), Positives = 294/375 (78%)

Query:     1 MAEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
             + EE+E KTFK+LG+ D L EAC+ +GW  P+KIQ EAIP AL+G+D+IGLA+TGSGKTG
Sbjct:    17 IVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTG 76

Query:    61 AFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 120
             AFALPIL ALLE    QR     FA VL+PTRELA QISEQFEALGS I ++ AV+VGG+
Sbjct:    77 AFALPILNALLETP--QR----LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGI 130

Query:   121 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDE 180
             D M Q+LAL K+PHI++ATPGRL+DHL NTKGF+L  LKYLV+DEADR+LN DFE  +D+
Sbjct:   131 DSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDK 190

Query:   181 ILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK 240
             IL VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +SKY TV+ L+Q Y F+P+K+K
Sbjct:   191 ILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFK 250

Query:   241 DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK 300
             D YLVYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ G MSQSKRLG+LNKFK
Sbjct:   251 DTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFK 310

Query:   301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQY 360
             A   +IL+ TDVASRGLDIP VD+V+N+DIPT+SKDYIH              I+ V QY
Sbjct:   311 AKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQY 370

Query:   361 ELEWYLQIEKLIGKK 375
             ++E + +IE LIGKK
Sbjct:   371 DVELFQRIEHLIGKK 385


>UNIPROTKB|E2RN03 [details] [associations]
            symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
            OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
            NextBio:20853120 Uniprot:E2RN03
        Length = 482

 Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
 Identities = 239/373 (64%), Positives = 293/373 (78%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             +E+E KTFK+LG+ D L EAC+ +GW  P+KIQ EAIP AL+G+D+IGLA+TGSGKTGAF
Sbjct:    45 QEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF 104

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
             ALPIL ALLE    QR     FA VL+PTRELA QISEQFEALGS I ++ AV+VGG+D 
Sbjct:   105 ALPILNALLETP--QR----LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDS 158

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
             M Q+LAL K+PHIV+ATPGRL+DHL NTKGF+L  LKYLV+DEADR+LN DFE  +D+IL
Sbjct:   159 MSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKIL 218

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242
              VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +SKY TV+ L+Q Y F+P+K+KD 
Sbjct:   219 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDT 278

Query:   243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
             YLVYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ G MSQSKRLG+LNKFKA 
Sbjct:   279 YLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAK 338

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
               +IL+ TDVASRGLDIP VD+V+N+DIPT+SKDYIH              I+ V QY++
Sbjct:   339 ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDV 398

Query:   363 EWYLQIEKLIGKK 375
             E + +IE LIGKK
Sbjct:   399 ELFQRIEHLIGKK 411


>UNIPROTKB|Q5ZLB0 [details] [associations]
            symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
            HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
            EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
            RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
            Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
            InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
        Length = 453

 Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
 Identities = 234/371 (63%), Positives = 292/371 (78%)

Query:     5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             +E ++FK+LG+ D L EAC+ +GWK P+KIQ EAIP AL+G+D+IGLA+TGSGKTGAFAL
Sbjct:    22 EEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFAL 81

Query:    65 PILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124
             PILQALL+    QR     FA VL+PTRELA QISEQFEALGS I +  AV+VGG+D M 
Sbjct:    82 PILQALLDAP--QR----LFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMS 135

Query:   125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
             Q+LAL K+PHI++ATPGRL+DHL NTKGF+L  LK+LV+DEADR+LN DFE  +D+IL V
Sbjct:   136 QSLALAKKPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKV 195

Query:   185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244
             IPR R+T+LFSATMTK+V+KLQRA LKNPVK   +SKY TV+ L+Q Y F+P+K+KD YL
Sbjct:   196 IPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYL 255

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
             VYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ G MSQ+KRLG+LNKFKA   
Sbjct:   256 VYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKAR 315

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEW 364
             +IL+ TDVASRGLDIP VD+VIN+DIPT+SKDYIH              I+ V QY++E 
Sbjct:   316 SILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVEL 375

Query:   365 YLQIEKLIGKK 375
             + +IE LIGKK
Sbjct:   376 FQRIEHLIGKK 386


>FB|FBgn0032919 [details] [associations]
            symbol:CG9253 species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
            PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
            OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
        Length = 507

 Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
 Identities = 238/405 (58%), Positives = 301/405 (74%)

Query:     2 AEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61
             AEE+++ T+K+LGL + L +AC+ + WK PSKIQ EAIP AL+GKD+IGLA+TGSGKTGA
Sbjct:    56 AEEQKL-TWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGA 114

Query:    62 FALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 121
             FALPIL ALLE    QR    +FA VL+PTRELA QI EQFEALGSGI ++C V+VGG+D
Sbjct:   115 FALPILHALLE--NPQR----YFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMD 168

Query:   122 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEI 181
             M+ Q L L K+PHI++ATPGRL+DHL N KGF+L  +KYLV+DEADR+LN DFE  LD+I
Sbjct:   169 MVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKI 228

Query:   182 LNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241
             L V+PR R+T+LFSATMTKKVKKLQRA LK+PVK+E ++KY TV+ L+Q Y F+P KYKD
Sbjct:   229 LKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKD 288

Query:   242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA 301
              YLV+IL E++ +S M+F  TC+ T   ALMLR LG  AIP+ G MSQ+KRL ALNKFKA
Sbjct:   289 VYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKA 348

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYE 361
                +ILI TDVASRGLDIP VD+V+N+DIPT+SKDYIH              I+LV+QY+
Sbjct:   349 KNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYD 408

Query:   362 LEWYLQIEKLIGKKXXXXXXXXXXXXXXXXXXXXXKRISQMTIKD 406
             +E Y +IE L+GK+                     +R +++ +KD
Sbjct:   409 IELYQRIEHLLGKQLTLYKCEEDEVMALQERVAEAQRTAKLELKD 453


>ZFIN|ZDB-GENE-050522-359 [details] [associations]
            symbol:zgc:112350 "zgc:112350" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
            EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
            UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
            KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
        Length = 512

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 232/403 (57%), Positives = 300/403 (74%)

Query:     6 EVKT-FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             E+ T FKELG+ + L EAC+ +GWK P+KIQ EAIP AL+G+D+IGLA+TGSGKTGAFA+
Sbjct:    76 EIHTSFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAV 135

Query:    65 PILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124
             P+LQ+LL  A+   T+      VL+PTRELA QI+EQF+ALGS I ++ AV+VGG+DMM 
Sbjct:   136 PVLQSLLACAQRLHTL------VLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMS 189

Query:   125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
             Q L L K+PH+V+ATPGRL+DH+ NTKGF+L  LKYLV+DEADR+LN DFE  +D+IL V
Sbjct:   190 QALVLAKKPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKV 249

Query:   185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244
             IPR R+T+LFSATMTKKV+KLQRA L++PVK   +SKY+TVD L+Q Y F+P+KYKDCYL
Sbjct:   250 IPRDRRTFLFSATMTKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKYKDCYL 309

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
             V IL E++ +S MVF  TC+ T+ +AL+LRNLG  AIP+ G MSQ+KRLGALNKFK+   
Sbjct:   310 VSILNELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSR 369

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEW 364
             ++L+ TDVASRGLDIP VD VIN+DIPT+SKDYIH              I+ V QY++E 
Sbjct:   370 SVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVEL 429

Query:   365 YLQIEKLIGKKXXXXXXXXXXXXXXXXXXXXXKRISQMTIKDS 407
             + +IE LIGKK                     +R +++ +K+S
Sbjct:   430 FQRIEALIGKKLPAFPTQEEEVMMLVERVSEAQRFARIEMKES 472


>UNIPROTKB|I3L976 [details] [associations]
            symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
            OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
        Length = 456

 Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
 Identities = 229/337 (67%), Positives = 277/337 (82%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             EE+E KTFK+LG+ D L EAC+ +GW  P+KIQ EAIP AL+G+D+IGLA+TGSGKTGAF
Sbjct:    18 EEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF 77

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
             ALPIL ALLE    QR     FA VL+PTRELA QISEQFEALGS I ++CAV+VGG+D 
Sbjct:    78 ALPILNALLETP--QR----LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDS 131

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
             M Q+LAL K+PHIV+ATPGRL+DHL NTKGF+L  LKYLV+DEADR+LN DFE  +D+IL
Sbjct:   132 MSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKIL 191

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242
              VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +SKY TV+ L+Q Y F+P+K+KD 
Sbjct:   192 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDT 251

Query:   243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
             YLVYIL E++ +S M+F  TC+ T+  AL+LRNLG  AIP+ G MSQSKRLG+LNKFKA 
Sbjct:   252 YLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAK 311

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
               +IL+ TDVASRGLDIP VD+V+N+DIPT+SKDYIH
Sbjct:   312 ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 348


>WB|WBGene00012059 [details] [associations]
            symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
            evidence=IMP] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
            GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
            OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
            ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
            EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
            UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
            NextBio:892086 Uniprot:P34580
        Length = 489

 Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
 Identities = 223/373 (59%), Positives = 283/373 (75%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             E+ + K+F ELG+   L +AC+ +GW  PSKIQ  A+PHAL+GKD+IGLA+TGSGKTGAF
Sbjct:    39 EDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAF 98

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
             A+P+LQ+LL+  +      AFF  VL+PTRELA QI +QFEALGSGI L  AV+VGGVDM
Sbjct:    99 AIPVLQSLLDHPQ------AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDM 152

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               Q +AL +RPHI+VATPGRL+DHL NTKGF+L  LK+L++DEADR+LN DFE  LD+IL
Sbjct:   153 AAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKIL 212

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242
              VIPR R+TYLFSATMTKKV KL+RA L++P ++  +S+Y TVD LKQ Y FVP KYK+ 
Sbjct:   213 KVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKET 272

Query:   243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
             YLVY+L E + +S +VF  TC  T  +A+MLR LG +A+P+ G MSQ KRLG+LNKFK+ 
Sbjct:   273 YLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSK 332

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
                IL+CTDVA+RGLDIP VDMVINYD+P+ SKDY+H              I++V QY++
Sbjct:   333 AREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDV 392

Query:   363 EWYLQIEKLIGKK 375
             E Y +IE  +GKK
Sbjct:   393 EAYQKIEANLGKK 405


>DICTYBASE|DDB_G0280147 [details] [associations]
            symbol:ddx47 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
            GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
            EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
            RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
            EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
            Uniprot:Q54VT4
        Length = 546

 Score = 1101 (392.6 bits), Expect = 2.1e-113, Sum P(2) = 2.1e-113
 Identities = 219/436 (50%), Positives = 293/436 (67%)

Query:     3 EEKEVK--TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
             EEK+ +  TF+ LG+  ++++AC  +G+  P +IQ E+IP AL+G+D+IGLAQTGSGKT 
Sbjct:   112 EEKKYENVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTA 171

Query:    61 AFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 120
             AF +P+LQ LLE  +        F   L+PTRELA QI++QF A+GS I ++  VLVGG+
Sbjct:   172 AFVIPVLQKLLEAPQG------LFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGI 225

Query:   121 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDE 180
             D M Q+LAL K+PH+VV +PGR++ HL +TKGF+L ++KY ++DEADRL + DFE+ ++ 
Sbjct:   226 DSMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNN 285

Query:   181 ILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK 240
             IL VIP+ R TYLFSATMT KV KLQRA L NPVK++ ASKY TVDTL QQY FVP KYK
Sbjct:   286 ILKVIPKERNTYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFKYK 345

Query:   241 DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK 300
             DCYL YIL E++ + T++FT TC ++  +A+MLRNLG  AIPI+G M Q KRL +LNKFK
Sbjct:   346 DCYLAYILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFK 405

Query:   301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQY 360
              G  +IL+ TDVA+RGLDIPSVD+VINYD+PTNSK+Y+H              I++V QY
Sbjct:   406 QGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQY 465

Query:   361 ELEWYLQIEKLIGKKXXXXXXXXXXXXXXXXXXXXXKRISQMTIKDSXXXXXXXXXXXXX 420
             ++E Y +IE ++ KK                      RI+   +KD              
Sbjct:   466 DVEMYQRIEFVLKKKLDSFPCQEETVLIFLERVQEAHRIATNELKDKNYSSSSDRHSGDS 525

Query:   421 XXXXQFGINKKKLSKR 436
                    INK+K+ K+
Sbjct:   526 EGSID--INKRKVIKK 539

 Score = 38 (18.4 bits), Expect = 2.1e-113, Sum P(2) = 2.1e-113
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query:     3 EEKEVKTFKELGLRDEL 19
             EEKEVK  +E  +++E+
Sbjct:    53 EEKEVKEEEEEEVKEEI 69


>POMBASE|SPAC823.08c [details] [associations]
            symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
            SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
            KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
        Length = 465

 Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
 Identities = 222/368 (60%), Positives = 278/368 (75%)

Query:     8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL 67
             KTFKELG+ DEL EACE +G+KTP+ IQ EAIP  L  +D+IGLAQTGSGKT AFALP++
Sbjct:    46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105

Query:    68 QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
             Q   E+  N    P FFA VL+PTRELA QISEQFEA+G  I +R  V+VGG+DM+ Q +
Sbjct:   106 Q---ELWNNPS--P-FFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAV 159

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             AL K+PH++V TPGRLMDHL NTKGFSL  LKYL++DEADRLL+ DF   +D+IL +IP 
Sbjct:   160 ALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPH 219

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              R+T LFSATMT KV+KLQRA L  PV++  +SK+STVDTL Q+Y F P K+KD YLVY+
Sbjct:   220 ERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYL 279

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
             + E++ +S ++F RT + T+ LA++LR LG  AIP+ G +SQS RLGALNKFK+G  + L
Sbjct:   280 VNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTL 339

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             + TDVA+RGLDIP VD+VINYDIPT+SK YIH              I+LV QY+LE +L+
Sbjct:   340 VATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLR 399

Query:   368 IEKLIGKK 375
             IE  IGKK
Sbjct:   400 IEATIGKK 407


>ASPGD|ASPL0000013201 [details] [associations]
            symbol:AN4233 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
            STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
            KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
        Length = 465

 Score = 1089 (388.4 bits), Expect = 2.9e-110, P = 2.9e-110
 Identities = 214/373 (57%), Positives = 277/373 (74%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             E    K+FKELG+ D+L EACEN+G+K P+ IQ++AIP ALEG+D+IGLA+TGSGKT AF
Sbjct:    41 EPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAF 100

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
             ALP+LQAL+E  +        F  VL+PTRELA QIS+ FE LGS I +RCAV+VGG+DM
Sbjct:   101 ALPMLQALMEAPQT------LFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDM 154

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
             + Q++ALGK+PHI+VATPGRL+DHL NTKGFSL  LKYL +DEADRLL+ DF +SLD+I+
Sbjct:   155 VAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKII 214

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242
              ++PR R TYLFSATM+ KV+ LQRA L NPV++  +SKY TV TL+  Y  +P K+K+ 
Sbjct:   215 RILPRTRHTYLFSATMSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNL 274

Query:   243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
             YLVY+L E +  S ++FT T   T+ +A MLR LG  AIP+ G +SQS RLGAL KF++ 
Sbjct:   275 YLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSR 334

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
               +IL+ TDVA+RGLDIPSVD+V N+D+P +SK YIH              IS V QY++
Sbjct:   335 SRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDV 394

Query:   363 EWYLQIEKLIGKK 375
             E +L+IE  + KK
Sbjct:   395 EVWLRIEHALSKK 407


>CGD|CAL0000056 [details] [associations]
            symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
            transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
            ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
            KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
        Length = 539

 Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
 Identities = 211/372 (56%), Positives = 270/372 (72%)

Query:     4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFA 63
             E + KTFKEL L  +L+E+ E++ +  P+ IQ+EAIPHALEGKD+IGLAQTGSGKT AFA
Sbjct:   119 ELKFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFA 178

Query:    64 LPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123
             +PILQ+L    +     P +FA VL+PTREL  QI + F+ALGS + LR + +VGG+DMM
Sbjct:   179 IPILQSLWHAQQ-----P-YFALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMM 232

Query:   124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
              Q   L ++PH++VATPGR+MDHL +TKGFSL  LKYLV+DEADRLL+ DF  +LD+IL 
Sbjct:   233 DQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILK 292

Query:   184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
             VIP  R TYLFSATMT K++KLQRA L NPV++  +SKY T D L Q    V   YK+  
Sbjct:   293 VIPIKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTI 352

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303
             L+++L E    S +VFTRT    +  AL+ R LG  A+P+ G +SQS+RLG+LNKFK+ +
Sbjct:   353 LIHLLNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQ 412

Query:   304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELE 363
              NIL+ TDVA+RGLDIPSVD+VINYDIPT+SK YIH              ISL+ QY+LE
Sbjct:   413 ANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLE 472

Query:   364 WYLQIEKLIGKK 375
              YL+IE ++GKK
Sbjct:   473 MYLRIESVLGKK 484


>SGD|S000001107 [details] [associations]
            symbol:RRP3 "Protein involved in rRNA processing"
            species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
            SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
            LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
            evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
            GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
            RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
            DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
            PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
            KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
            GermOnline:YHR065C Uniprot:P38712
        Length = 501

 Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
 Identities = 200/376 (53%), Positives = 266/376 (70%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             E++  ++F EL L  EL++AC+N+ +  P+ IQ++AIP ALEG D+IGLAQTGSGKT AF
Sbjct:    76 EDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAF 135

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
             A+PIL  L    E     P ++AC+L+PTRELA QI E F++LGS + +R   +VGG++M
Sbjct:   136 AIPILNRLWHDQE-----P-YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNM 189

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
             M Q   L ++PHI++ATPGRLMDHL NTKGFSL  LK+LV+DEADRLL+ +F   LD IL
Sbjct:   190 MDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRIL 249

Query:   183 NVIPRM-RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241
              +IP   R TYLFSATMT K+ KLQRA L NPVK   ++KY TVDTL Q    VP   K+
Sbjct:   250 KIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKN 309

Query:   242 CYLVYILTEVSASSTMVFTRT-CDATRLLALMLRNLGQ-RAIPISGHMSQSKRLGALNKF 299
              YL+Y+L E    + ++FTRT  +A RL  L   NL +  A  + G ++Q++R+G+L+ F
Sbjct:   310 TYLIYLLNEFIGKTMIIFTRTKANAERLSGLC--NLLEFSATALHGDLNQNQRMGSLDLF 367

Query:   300 KAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQ 359
             KAG+ +IL+ TDVA+RGLDIPSVD+V+NYDIP +SK YIH              ISLV+Q
Sbjct:   368 KAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427

Query:   360 YELEWYLQIEKLIGKK 375
             Y+LE  L+IE+++GKK
Sbjct:   428 YDLELILRIEEVLGKK 443


>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
            symbol:PFB0860c "RNA helicase, putative"
            species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
            KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
            ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
            GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
            OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
        Length = 562

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 176/372 (47%), Positives = 258/372 (69%)

Query:     4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFA 63
             EK+  TF++L + +E++E+ + +GWK P++IQ E +PHA   KD+IGL++TGSGKT  F 
Sbjct:   152 EKQNVTFEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFI 211

Query:    64 LPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123
             +PILQ   ++  N+++   F+A V+SPTREL IQIS+ F+ALG  + +    + GGVD++
Sbjct:   212 IPILQ---DLKVNKQS---FYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIV 265

Query:   124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
              Q+L L K+P+++V+TPGR++DHL NTKGF+L  LKYLV DEAD+LL+ DFE S++++L 
Sbjct:   266 TQSLNLAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLL 325

Query:   184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
             ++P  R T+LFSATMTK V KL++ACLKNPVK+E ++KYSTV TL + Y F+P KYK  Y
Sbjct:   326 ILPPNRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTY 385

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303
             L  +       + ++FT TC   + L    RNLG ++I + G ++Q++RL +LN FK  +
Sbjct:   386 LSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNK 445

Query:   304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELE 363
              NILI T V +RGLD+  + +VIN+DI  + K+YIH              I+ V QY++E
Sbjct:   446 YNILISTQVGARGLDLQDIKIVINFDI-CSCKEYIHRVGRTARAGRSGKSITFVTQYDVE 504

Query:   364 WYLQIEKLIGKK 375
              +L IEK + KK
Sbjct:   505 NFLAIEKQLNKK 516


>UNIPROTKB|O96264 [details] [associations]
            symbol:PFB0860c "DEAD/DEAH box helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
            RefSeq:XP_001349688.1 ProteinModelPortal:O96264
            EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
            EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
            Uniprot:O96264
        Length = 562

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 176/372 (47%), Positives = 258/372 (69%)

Query:     4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFA 63
             EK+  TF++L + +E++E+ + +GWK P++IQ E +PHA   KD+IGL++TGSGKT  F 
Sbjct:   152 EKQNVTFEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFI 211

Query:    64 LPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123
             +PILQ   ++  N+++   F+A V+SPTREL IQIS+ F+ALG  + +    + GGVD++
Sbjct:   212 IPILQ---DLKVNKQS---FYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIV 265

Query:   124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
              Q+L L K+P+++V+TPGR++DHL NTKGF+L  LKYLV DEAD+LL+ DFE S++++L 
Sbjct:   266 TQSLNLAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLL 325

Query:   184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
             ++P  R T+LFSATMTK V KL++ACLKNPVK+E ++KYSTV TL + Y F+P KYK  Y
Sbjct:   326 ILPPNRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTY 385

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303
             L  +       + ++FT TC   + L    RNLG ++I + G ++Q++RL +LN FK  +
Sbjct:   386 LSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNK 445

Query:   304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELE 363
              NILI T V +RGLD+  + +VIN+DI  + K+YIH              I+ V QY++E
Sbjct:   446 YNILISTQVGARGLDLQDIKIVINFDI-CSCKEYIHRVGRTARAGRSGKSITFVTQYDVE 504

Query:   364 WYLQIEKLIGKK 375
              +L IEK + KK
Sbjct:   505 NFLAIEKQLNKK 516


>DICTYBASE|DDB_G0270396 [details] [associations]
            symbol:ddx49 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
            GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
            RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
            PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
            KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
        Length = 508

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 178/370 (48%), Positives = 236/370 (63%)

Query:     8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL 67
             KTF+ELGL   LV  C+ +G+K PS IQA  IP  L+G+D+I  A+TGSGKT +FA+PIL
Sbjct:     4 KTFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPIL 63

Query:    68 QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
                 +++E+   V   FA +L+PTRELA+QI EQF A+G+ +++ C+V++GG+D + Q L
Sbjct:    64 N---QLSEDPYGV---FAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQAL 117

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP- 186
              L KRPHI+VATPGRL  HL N    +L   K+LVLDEADRLL +DFE  +  IL  +P 
Sbjct:   118 ILDKRPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPP 177

Query:   187 -RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV 245
                RQT LFSATMTK + KL    L  P   E  SKY TVDTLKQ+Y ++PA  KDCYLV
Sbjct:   178 PEKRQTLLFSATMTKNLTKLDSIALNKPFIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLV 237

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
             YIL +   SS +VF   C A   +  ML  L   ++ +   + Q  RL AL  FK+G+  
Sbjct:   238 YILKKHEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVK 297

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
             +L+ TDVASRGLDIP V +VINY +  +SKDYIH              IS +  +++   
Sbjct:   298 VLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLI 357

Query:   366 LQIEKLIGKK 375
               IE++I K+
Sbjct:   358 KGIEEIIKKQ 367


>TAIR|locus:2032910 [details] [associations]
            symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
            development" evidence=IMP] [GO:0009791 "post-embryonic development"
            evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
            evidence=IMP] [GO:0006606 "protein import into nucleus"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
            GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
            HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
            PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
            ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
            EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
            KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
            InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
            Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
        Length = 491

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 173/403 (42%), Positives = 241/403 (59%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F+ LGL +  VE C+ +G + P+ +Q   +P  L G+D++GLAQTGSGKT AFALPIL  
Sbjct:    60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L   AE+   V   FA V++PTRELA Q++EQF+ALGS ++LRC+V+VGG+DM+ QT++L
Sbjct:   120 L---AEDPYGV---FALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSL 173

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFS--LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
               RPHIV+ TPGR+   L N           K+LVLDEADR+L+  F+  L  I   +P+
Sbjct:   174 VSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPK 233

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQT LFSATMT  ++ L           EA     TVDTL QQ+ F     K+ YLV+I
Sbjct:   234 SRQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHI 293

Query:   248 LTEVSAS---STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
             L+++      S M+F  TC   + L+LML  L    I +    SQS RL AL+KFK+G+ 
Sbjct:   294 LSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKV 353

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEW 364
              IL+ TDVASRGLDIP+VD+VINYDIP + +DY+H              +S++ + +++ 
Sbjct:   354 PILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKL 413

Query:   365 YLQIEKLIGKKXXXXXXXXXXXXXXXXXXXXXKRISQMTIKDS 407
               +IE+ +GKK                     KR++ M + D+
Sbjct:   414 IHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLDN 456


>UNIPROTKB|Q9Y6V7 [details] [associations]
            symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
            HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
            RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
            SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
            DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
            Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
            CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
            PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
            PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
            Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
            GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
        Length = 483

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 168/373 (45%), Positives = 225/373 (60%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F ELGL   LVE C  +G K P+ +Q   IP  LEG+D +G A+TGSGKT AF LPILQ 
Sbjct:     4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L   +E+   +   F  VL+PTRELA QI+EQF  LG  + L+  ++VGG+DM+ Q L L
Sbjct:    64 L---SEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALEL 117

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND---DFEKSLDEILNVIP 186
              ++PH+V+ATPGRL DHL ++  FS+  +++LV+DEADRLL     DF   L+ IL  +P
Sbjct:   118 SRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVP 177

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQT LFSAT+T  +++LQ      P   EA +  STV+ L Q+Y  VP K KD YLV+
Sbjct:   178 ARRQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVH 237

Query:   247 ILTEVSAS----STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
             ++          S ++FT TC   ++L +MLR      + +   M Q +R  AL KFK+ 
Sbjct:   238 LIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSS 297

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
                ILI TDVASRGLDIP+V +VIN++ P   K YIH              I+LV QY++
Sbjct:   298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357

Query:   363 EWYLQIEKLIGKK 375
                  IE+ I KK
Sbjct:   358 HLVHAIEEQIKKK 370


>UNIPROTKB|F1S7D9 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
            GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
            RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
            GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
        Length = 483

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 167/373 (44%), Positives = 224/373 (60%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F ELGL   LVE C  +G K P+ +Q   IP  LEG+D +G A+TGSGKT AF LPILQ 
Sbjct:     4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L   +E+   +   F  VL+PTRELA QI+EQF  LG  + L+  ++VGG+DM+ Q L L
Sbjct:    64 L---SEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALEL 117

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND---DFEKSLDEILNVIP 186
              ++PH+V+ATPGRL DHL ++  FS+  +++LV+DEADRLL     DF   L+ IL  +P
Sbjct:   118 SRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVP 177

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQT LFSAT+T  +++LQ      P   EA +   TV+ L Q+Y  VP K KD YLV+
Sbjct:   178 ARRQTLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVH 237

Query:   247 ILTEVSAS----STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
             ++          S ++FT TC   ++L +MLR      + +   M Q +R  AL KFK+ 
Sbjct:   238 LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
                ILI TDVASRGLDIP+V +VIN++ P   K YIH              I+LV QY++
Sbjct:   298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357

Query:   363 EWYLQIEKLIGKK 375
                  IE+ I KK
Sbjct:   358 HLVHAIEEQIKKK 370


>UNIPROTKB|E2RBM7 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
            OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
            EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
            Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
            NextBio:20858886 Uniprot:E2RBM7
        Length = 488

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 167/373 (44%), Positives = 224/373 (60%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F ELGL   LVE C  +G K P+ +Q   IP  LEG+D +G A+TGSGKT AF LPILQ 
Sbjct:     4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L   +E+   +   F  VL+PTRELA QI+EQF  LG  + L+  ++VGG+DM+ Q L L
Sbjct:    64 L---SEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALEL 117

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND---DFEKSLDEILNVIP 186
              ++PH+V+ATPGRL DHL ++  FS+  +++LV+DEADRLL     DF   L+ IL  +P
Sbjct:   118 SRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVP 177

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQT LFSAT+T  +K+LQ      P   EA +   TV+ L Q+Y  VP K KD YLV+
Sbjct:   178 TRRQTLLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVH 237

Query:   247 ILTEVSAS----STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
             ++          S ++FT TC   ++L +MLR      + +   M Q +R  AL KFK+ 
Sbjct:   238 LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
                ILI TDVASRGLDIP+V +VIN++ P   K YIH              I+LV QY++
Sbjct:   298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357

Query:   363 EWYLQIEKLIGKK 375
                  IE+ I K+
Sbjct:   358 HLVHAIEEQIKKQ 370


>UNIPROTKB|F1NA53 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
            IPI:IPI00684751 ProteinModelPortal:F1NA53
            Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
        Length = 402

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 168/373 (45%), Positives = 227/373 (60%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F+ELGL   LVE    +G   P+ +QA  IP  L+G+D +G A+TGSGKT AF LP+LQ 
Sbjct:     4 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQV 63

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L   +E+   +   F  VL+PTRELA QI+EQF  LG  + L+  V+VGG+DM+ Q L L
Sbjct:    64 L---SEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALEL 117

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND---DFEKSLDEILNVIP 186
              ++PH+V+ATPGRL DHL ++  FSL  LK+LVLDEADRLL     DF   L+ IL  +P
Sbjct:   118 SRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVP 177

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQT LFSAT+T  + +L+   +  P   EAAS+  TVD L Q+Y  VP   KD YLV+
Sbjct:   178 ARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVH 237

Query:   247 ILT----EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
             ++     E    S ++FT+TC   ++L +MLR     ++ +   M Q +R  AL KFK+ 
Sbjct:   238 LIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSS 297

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
                ILI TDVA+RGLDIP+V +VIN++ P   K YIH              I++V QY++
Sbjct:   298 IFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDI 357

Query:   363 EWYLQIEKLIGKK 375
                  IE+ I  K
Sbjct:   358 HLVHAIEEEIKLK 370


>UNIPROTKB|F1NYX0 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
            EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
            ArrayExpress:F1NYX0 Uniprot:F1NYX0
        Length = 482

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 168/373 (45%), Positives = 227/373 (60%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F+ELGL   LVE    +G   P+ +QA  IP  L+G+D +G A+TGSGKT AF LP+LQ 
Sbjct:     7 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQV 66

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L   +E+   +   F  VL+PTRELA QI+EQF  LG  + L+  V+VGG+DM+ Q L L
Sbjct:    67 L---SEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALEL 120

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND---DFEKSLDEILNVIP 186
              ++PH+V+ATPGRL DHL ++  FSL  LK+LVLDEADRLL     DF   L+ IL  +P
Sbjct:   121 SRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVP 180

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQT LFSAT+T  + +L+   +  P   EAAS+  TVD L Q+Y  VP   KD YLV+
Sbjct:   181 ARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVH 240

Query:   247 ILT----EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
             ++     E    S ++FT+TC   ++L +MLR     ++ +   M Q +R  AL KFK+ 
Sbjct:   241 LIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSS 300

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
                ILI TDVA+RGLDIP+V +VIN++ P   K YIH              I++V QY++
Sbjct:   301 IFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDI 360

Query:   363 EWYLQIEKLIGKK 375
                  IE+ I  K
Sbjct:   361 HLVHAIEEEIKLK 373


>MGI|MGI:2136689 [details] [associations]
            symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
            GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
            OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
            RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
            ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
            PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
            KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
            Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
            GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
        Length = 480

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 164/370 (44%), Positives = 224/370 (60%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F E+GL   LVE C  +G K P+ +Q   IP  LEG+D +G A+TGSGKT AF LPILQ 
Sbjct:     4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L   +E+   +   F  VL+PTRELA QI+EQF  LG  + L+  ++VGG+DM+ Q L L
Sbjct:    64 L---SEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALEL 117

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND---DFEKSLDEILNVIP 186
              ++PH+V+ATPGRL DHL ++  F++  +++LV+DEADRLL     DF   L+ IL  +P
Sbjct:   118 SRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVP 177

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQT LFSAT+T  +K+LQ      P   EA +   TV+ L Q+Y  VP K KD YLV+
Sbjct:   178 ARRQTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVH 237

Query:   247 ILT----EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
             ++     ++   S ++FT TC   ++L +MLR      + +   M Q +R  AL KFK+ 
Sbjct:   238 LVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
                ILI TDVASRGLDIP+V +VIN++ P   K YIH              I+LV QY++
Sbjct:   298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357

Query:   363 EWYLQIEKLI 372
                  IE+ I
Sbjct:   358 HLLHAIEEQI 367


>RGD|1311124 [details] [associations]
            symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
            GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
            Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
        Length = 480

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 164/370 (44%), Positives = 224/370 (60%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F EL L   LVE C  +G K P+ +Q   IP  LEG+D +G A+TGSGKT AF LPILQ 
Sbjct:     4 FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L   +E+   +   F  VL+PTRELA QI+EQF  LG  + L+  ++VGG+DM+ Q L L
Sbjct:    64 L---SEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALEL 117

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND---DFEKSLDEILNVIP 186
              ++PH+V+ATPGRL DHL ++  F++  +++LVLDEADRLL     DF   L+ IL+ +P
Sbjct:   118 SRKPHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVP 177

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQT LFSAT+T  +K+LQ      P   EA +   TV+ L Q+Y  VP K KD YLV+
Sbjct:   178 ARRQTLLFSATLTDTLKELQGLATNQPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVH 237

Query:   247 ILT----EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
             ++     ++   S ++FT TC   ++L +MLR      + +   M Q +R  AL +FK+ 
Sbjct:   238 LVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSS 297

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
                ILI TDVASRGLDIP+V +VIN++ P   K YIH              I+LV QY++
Sbjct:   298 TYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357

Query:   363 EWYLQIEKLI 372
                  IE+ I
Sbjct:   358 HLLHAIEEEI 367


>ZFIN|ZDB-GENE-031030-3 [details] [associations]
            symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
            HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
            RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
            STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
            NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
        Length = 468

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 158/369 (42%), Positives = 225/369 (60%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF+ LGL + L++ C+ +G   P+ +Q + IP  L+G+D +G A+TGSGKT AF LP+LQ
Sbjct:     3 TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQ 62

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L   +E+   V   F  VL+PTRELA QI+EQF  LG  + L+  ++VGG+DM+ Q L 
Sbjct:    63 KL---SEDPYGV---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLE 116

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND---DFEKSLDEILNVI 185
             L K+PH+VVATPGRL DH+ ++   +L  +++L++DEADRLL     DF K L+ IL+ +
Sbjct:   117 LSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAV 176

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV 245
             P  RQT LFSAT+T  +++LQ   +  P   E  S   TV+ L Q++   P K KD YLV
Sbjct:   177 PAKRQTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAYLV 236

Query:   246 YILT----EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA 301
             +++     E    S ++FT TC + ++L +MLR      I +   M Q +R   L KFK+
Sbjct:   237 HLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKS 296

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYE 361
                 ILI TDVA+RGLDIP+V +VIN++ P   K YIH              I+LV QY+
Sbjct:   297 NVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYD 356

Query:   362 LEWYLQIEK 370
             +     IE+
Sbjct:   357 IHLINAIEE 365


>WB|WBGene00019219 [details] [associations]
            symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
            GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
            GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
            RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
            PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
            KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
            InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
        Length = 561

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 157/378 (41%), Positives = 218/378 (57%)

Query:     8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL 67
             K F +LG+   + +  + +  KT + +QA  IP  LEG D++G A+TG+GKT AFA+PIL
Sbjct:    89 KKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPIL 148

Query:    68 QALLEIAENQRTVP-AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
             Q L          P   +A +L+PTRELA QI+EQF ALG  I+L+C+V+VGG  ++ Q 
Sbjct:   149 QKL-------SVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQA 201

Query:   127 LALGKRPHIVVATPGRLMDHLTN---TKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
               L +RPH+VVATPGRL D + +   T       +++ VLDEADR+L   +   L  I  
Sbjct:   202 RELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFE 261

Query:   184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK--YSTVDTLKQQYRFVPAKYKD 241
              I   RQT L SAT+T  +  L R   + P   E   K   STVD L+Q+Y   P   KD
Sbjct:   262 SISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKD 321

Query:   242 CYLVYILTEVSA----SSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALN 297
              YLVY++   S     SS M+F +TC   + LA M   LG R   +   + Q +RL AL+
Sbjct:   322 AYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALS 381

Query:   298 KFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLV 357
              F++    ++ICTDVASRGLDIP VD+V+N+++P   K YIH              +S V
Sbjct:   382 AFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFV 441

Query:   358 NQYELEWYLQIEKLIGKK 375
              QY++E    +E++IGKK
Sbjct:   442 TQYDVELLQAVEQVIGKK 459


>CGD|CAL0004058 [details] [associations]
            symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
            preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
            SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            [GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
            from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
            "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
            RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
            STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
            KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
        Length = 440

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 159/380 (41%), Positives = 230/380 (60%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F +LG+   L E+ + +   TP+ IQ+  IP  L+G D IG A+TGSGKT AFA P+L 
Sbjct:     2 SFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLT 61

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
                + +E+   +   F  +L+PTRELA+QI+EQF ALG+ ++++ AV+VGG D +QQTLA
Sbjct:    62 ---QWSEDPFGI---FGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLA 115

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTL---KYLVLDEADRLLNDDFEKSLDEILNVI 185
             L ++PH V+ATPGRL DH+ N+   ++  L   KYLVLDEADRLL++ F   L    +V+
Sbjct:   116 LQRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVL 175

Query:   186 PRM--RQTYLFSATMTKKVKKLQRACL---KNPV---KIEAASKYSTVDTLKQQYRFVPA 237
             P    RQT LF+AT+T  V+ L+       K PV   ++E   K +   TL+  Y FVP+
Sbjct:   176 PTSDKRQTLLFTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPS 235

Query:   238 KYKDCYLVYIL--TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
               K+ YL  IL   +   S+ ++F        +L  MLR L  R   +   M QS+R  +
Sbjct:   236 YVKEAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNS 295

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXIS 355
             L++FKAG   ILI TDVASRGLDIP+V++VIN+DIP +  D+IH              +S
Sbjct:   296 LHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVS 355

Query:   356 LVNQYELEWYLQIEKLIGKK 375
             ++ + +++    IE+ I KK
Sbjct:   356 IIGEKDIDRIQSIEERINKK 375


>POMBASE|SPBC543.06c [details] [associations]
            symbol:dbp8 "ATP-dependent RNA helicase Dbp8
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
            RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
            EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
            NextBio:20802183 Uniprot:Q9HGM5
        Length = 453

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 157/389 (40%), Positives = 232/389 (59%)

Query:     1 MAEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
             M+E    K+F +LG+   L++  + +    P+ IQ   I   LEG++ IG A+TGSGKT 
Sbjct:     1 MSEHTR-KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTA 59

Query:    61 AFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 120
             AFALPI++         +     FA +L+PTRELAIQI EQF ALG+ ++L+ A++VGG+
Sbjct:    60 AFALPIIEKW------SKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGM 113

Query:   121 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKG----FSLGTLKYLVLDEADRLLNDDFEK 176
             DM++Q++ L KRPH+VVATPGRL D L  + G      L  +K+LV+DEADRLL+  F  
Sbjct:   114 DMIRQSIDLSKRPHVVVATPGRLAD-LIRSNGEETIAGLRRIKFLVMDEADRLLSPTFAD 172

Query:   177 SLDEILNVIPRM--RQTYLFSATMTKKVKKLQRACLKN---PV---KIEAASKYSTVDTL 228
              LD+  +V+P    RQT LF+AT+T  +++L+    KN   P+   ++E     S   TL
Sbjct:   173 DLDDCFSVLPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVET-DNISVPSTL 231

Query:   229 KQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGH 286
             +Q Y FV ++ ++ YLV++LT  E +  S ++F        L+  +LR L  R   +   
Sbjct:   232 QQSYIFVSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSE 291

Query:   287 MSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXX 346
             M Q +R+ +L +F+A    IL+ TDVASRGLDIPSV +VIN+D+P +  DYIH       
Sbjct:   292 MVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTAR 351

Query:   347 XXXXXXXISLVNQYELEWYLQIEKLIGKK 375
                    IS+V + +++    IE  +G K
Sbjct:   352 AGRSGESISIVTERDVDLVHAIEDRVGTK 380


>FB|FBgn0010220 [details] [associations]
            symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
            melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
            GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
            PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
            ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
            EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
            CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
            OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
            Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
        Length = 521

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 161/380 (42%), Positives = 221/380 (58%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             + KE   F+ LGLR  LV+    +G K  + IQ + IP  L G+D IG A+TGSGKT AF
Sbjct:     2 QRKEANPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAF 61

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
             ALPIL+ L E       V + FA VL+PT ELA QISEQF   G  + +R  V+ GG D 
Sbjct:    62 ALPILERLSE-----EPV-SHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQ 115

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
             M ++  L +RPHIVVA PGRL DHLT    FS   LKYLV+DEADR+LN DF++SL  I 
Sbjct:   116 MVESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIE 175

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPV-KIEAASKYSTVDTLKQQYRFVPAKY-K 240
               +P+ RQ   FSATM   +K+     + +   +    S  +TV+TL Q+Y  + A Y +
Sbjct:   176 RCLPKTRQNLFFSATMKDFIKESSIFPIASDCFEWSQDSDVATVETLDQRY-LLCADYDR 234

Query:   241 DCYLVYILT----EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGAL 296
             D  L+  L     E   ++ M+FT T    +LL++ L+N+    + + G M Q +R+ AL
Sbjct:   235 DMVLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAAL 294

Query:   297 NKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISL 356
             ++FK+ +   LI TDVA+RGLDIPSV++V+N+ +P   K+YIH              IS+
Sbjct:   295 SRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISI 354

Query:   357 VN-QYELEWYLQIEKLIGKK 375
                  +LE    IE+ I  K
Sbjct:   355 FRFPRDLELLAAIEEEINTK 374


>SGD|S000001212 [details] [associations]
            symbol:DBP8 "ATPase, putative RNA helicase" species:4932
            "Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
            evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
            mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
            "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
            rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
            rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
            GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
            OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
            ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
            MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
            EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
            GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
            Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
            Uniprot:P38719
        Length = 431

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 154/379 (40%), Positives = 214/379 (56%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             FK LGL   L E+   +    P+ IQ   IP  LEG+D IG A+TGSGKT AFA P+L  
Sbjct:     4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
               E           F  VL+PTRELA+QI+EQF ALGS +++R +V+VGG  ++QQ L L
Sbjct:    64 WSEDPSGM------FGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDL 117

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTL---KYLVLDEADRLLNDDFEKSLDEILNVIP 186
              ++PH ++ATPGRL  H+ ++   ++G L   KYLVLDEAD LL   F   L   ++ +P
Sbjct:   118 QRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALP 177

Query:   187 RM--RQTYLFSATMTKKVKKLQRACL---KNPV---KIEAASKYSTVDTLKQQYRFVPAK 238
                 RQT LF+AT+T +VK LQ A +   K P+   ++E+    +   TLK +Y  VP  
Sbjct:   178 PKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEH 237

Query:   239 YKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGAL 296
              K+ YL  +LT  E    + ++F        +L   L+ L  R   +   M Q +R  +L
Sbjct:   238 VKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSL 297

Query:   297 NKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISL 356
             ++F+A    ILI TDVASRGLDIP+V++V+NYDIP++   +IH              IS 
Sbjct:   298 HRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISF 357

Query:   357 VNQYELEWYLQIEKLIGKK 375
             V Q ++     IE  I KK
Sbjct:   358 VTQRDVSRIQAIEDRINKK 376


>POMBASE|SPAC30D11.03 [details] [associations]
            symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
            GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
            RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
            EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
            NextBio:20804181 Uniprot:Q09903
        Length = 754

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 133/354 (37%), Positives = 205/354 (57%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+ + L   +++   N+G++ P++IQ + IP AL GKD++G A TGSGKT AF +PIL+
Sbjct:   260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              LL      + VP     +L PTRELA+Q       + S   +   + +GG+ +  Q   
Sbjct:   320 RLLY---RPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQE 376

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L KRP IV+ATPGR +DH+ N++GF++  ++ +V+DEADR+L D F   L+EI+   P+ 
Sbjct:   377 LRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKS 436

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAK--YKDCYLV 245
             RQT LFSATMT KV  L R  L  PV++   +K +T   L Q++ R  P +   +   L+
Sbjct:   437 RQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLI 496

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
             Y+  E+    T++F R+      + ++   L   A  I G +SQ +R+ AL  F+ G+CN
Sbjct:   497 YLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCN 556

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQ 359
              L+ TDVASRG+DI  +++VINY+ P   + Y+H              I+L  +
Sbjct:   557 YLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGE 610


>UNIPROTKB|A4QYM6 [details] [associations]
            symbol:DRS1 "ATP-dependent RNA helicase DRS1"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
            ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
            KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
        Length = 790

 Score = 606 (218.4 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
 Identities = 135/351 (38%), Positives = 199/351 (56%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+ + L   ++    +VG+  P+ IQ++ IP AL GKD++G A TGSGKT AF +PIL+
Sbjct:   256 SFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILE 315

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              LL      + VP     +L+PTRELAIQ       L S   ++  + VGG+ +  Q   
Sbjct:   316 RLLY---RPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESE 372

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L  RP +++ATPGR +DH+ N+  F++ T++ LVLDEADR+L D F   L+EIL  +P+ 
Sbjct:   373 LRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKS 432

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKDC--YLV 245
             RQT LFSATMT  V  L R  L  PV++   S+  TV TL Q++ R  P + +    YLV
Sbjct:   433 RQTMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLV 492

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
             Y+   +     ++F R         ++   LG     + G MSQ +R+ ++  F+ G+ +
Sbjct:   493 YLCKNLYTERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVS 552

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISL 356
              L+ TD+ASRGLDI  VD VINY+ P + + Y+H              I+L
Sbjct:   553 FLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITL 603

 Score = 38 (18.4 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query:    17 DELVEACENVGWKTPSKIQAEAIP 40
             DE VE  E +  + P K +++ IP
Sbjct:    24 DEFVEEEEVIQEEAPPKKKSKTIP 47


>ASPGD|ASPL0000062195 [details] [associations]
            symbol:AN10125 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
        Length = 814

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 138/335 (41%), Positives = 196/335 (58%)

Query:     8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL 67
             ++F+E  L   ++     V +  P+ IQ + IP AL GKD++G A TGSGKT AF +PIL
Sbjct:   298 RSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL 357

Query:    68 QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
             + LL      R VP     +L PTRELA+Q       L +   +    LVGG  + +Q  
Sbjct:   358 ERLLF---RPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQEN 414

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
              L KRP +++ATPGR +DH+ N+  F++ TL+ LVLDEADR+L D F   L+EIL  IP+
Sbjct:   415 VLKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPK 474

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKDC--YL 244
              RQT LFSATMT  V KL R  L  PV++   +K +T  TL Q++ R  P +      YL
Sbjct:   475 SRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYL 534

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
             +++  EV     +VF R       + ++   LG +A  + G MSQ +R+ ++  F+ G  
Sbjct:   535 LHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNV 594

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             N L+ TD+ASRGLDI  V+ VINY+ P + + Y+H
Sbjct:   595 NFLLATDLASRGLDIKGVETVINYEAPQSHEIYVH 629


>UNIPROTKB|A0R8U6 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
            "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
            ProteinModelPortal:A0R8U6 STRING:A0R8U6
            EnsemblBacteria:EBBACT00000069056 GeneID:4546566
            GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
        Length = 528

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 137/331 (41%), Positives = 200/331 (60%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF+ELGL D L+++ E++G++  + IQAE IPHAL+GKD+IG AQTG+GKT AF LP+L 
Sbjct:     3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
                ++  ++ +V      V++PTRELAIQ+ E+   +G    +R   + GG D+ +Q  A
Sbjct:    63 ---KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRA 116

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L K PHI+V TPGR++DH+ N K   L  ++ +VLDEAD +LN  F + ++ IL  +P  
Sbjct:   117 LKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              QT LFSATM   ++++    +  P  I+  +K  T+  ++Q Y  V  K K   L  +L
Sbjct:   176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                S    +VF RT      L+  L   G  A  I G ++Q+KR+  L KFK G   +L+
Sbjct:   236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>UNIPROTKB|Q63GX5 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
            "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
            ProteinModelPortal:Q63GX5 STRING:Q63GX5
            EnsemblBacteria:EBBACT00000041470 GeneID:3022962
            GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
            BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
        Length = 528

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 137/331 (41%), Positives = 200/331 (60%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF+ELGL D L+++ E++G++  + IQAE IPHAL+GKD+IG AQTG+GKT AF LP+L 
Sbjct:     3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
                ++  ++ +V      V++PTRELAIQ+ E+   +G    +R   + GG D+ +Q  A
Sbjct:    63 ---KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRA 116

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L K PHI+V TPGR++DH+ N K   L  ++ +VLDEAD +LN  F + ++ IL  +P  
Sbjct:   117 LKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              QT LFSATM   ++++    +  P  I+  +K  T+  ++Q Y  V  K K   L  +L
Sbjct:   176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                S    +VF RT      L+  L   G  A  I G ++Q+KR+  L KFK G   +L+
Sbjct:   236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>UNIPROTKB|Q6HPE6 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:281309 "Bacillus thuringiensis serovar konkukian str.
            97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
            ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
            GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
            PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
        Length = 528

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 137/331 (41%), Positives = 200/331 (60%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF+ELGL D L+++ E++G++  + IQAE IPHAL+GKD+IG AQTG+GKT AF LP+L 
Sbjct:     3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
                ++  ++ +V      V++PTRELAIQ+ E+   +G    +R   + GG D+ +Q  A
Sbjct:    63 ---KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRA 116

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L K PHI+V TPGR++DH+ N K   L  ++ +VLDEAD +LN  F + ++ IL  +P  
Sbjct:   117 LKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              QT LFSATM   ++++    +  P  I+  +K  T+  ++Q Y  V  K K   L  +L
Sbjct:   176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                S    +VF RT      L+  L   G  A  I G ++Q+KR+  L KFK G   +L+
Sbjct:   236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>UNIPROTKB|Q73EU1 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
            OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
            RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
            DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
            GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
            Uniprot:Q73EU1
        Length = 525

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 137/331 (41%), Positives = 200/331 (60%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF+ELGL D L+++ E++G++  + IQAE IPHAL+GKD+IG AQTG+GKT AF LP+L 
Sbjct:     3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
                ++  ++ +V      V++PTRELAIQ+ E+   +G    +R   + GG D+ +Q  A
Sbjct:    63 ---KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRA 116

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L K PHI+V TPGR++DH+ N K   L  ++ +VLDEAD +LN  F + ++ IL  +P  
Sbjct:   117 LKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              QT LFSATM   ++++    +  P  I+  +K  T+  ++Q Y  V  K K   L  +L
Sbjct:   176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                S    +VF RT      L+  L   G  A  I G ++Q+KR+  L KFK G   +L+
Sbjct:   236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>UNIPROTKB|Q81IT9 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
            STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
            GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
            PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
        Length = 533

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 137/331 (41%), Positives = 200/331 (60%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF+ELGL D L+++ E++G++  + IQAE IPHAL+GKD+IG AQTG+GKT AF LP+L 
Sbjct:     3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
                ++  ++ +V      V++PTRELAIQ+ E+   +G    +R   + GG D+ +Q  A
Sbjct:    63 ---KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRA 116

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L K PHI+V TPGR++DH+ N K   L  ++ +VLDEAD +LN  F + ++ IL  +P  
Sbjct:   117 LKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              QT LFSATM   ++++    +  P  I+  +K  T+  ++Q Y  V  K K   L  +L
Sbjct:   176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                S    +VF RT      L+  L   G  A  I G ++Q+KR+  L KFK G   +L+
Sbjct:   236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>UNIPROTKB|Q81VG0 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
            HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
            EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
            EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
            GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
            BioCyc:BANT260799:GJAJ-255-MONOMER
            BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
        Length = 528

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 137/331 (41%), Positives = 200/331 (60%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF+ELGL D L+++ E++G++  + IQAE IPHAL+GKD+IG AQTG+GKT AF LP+L 
Sbjct:     3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
                ++  ++ +V      V++PTRELAIQ+ E+   +G    +R   + GG D+ +Q  A
Sbjct:    63 ---KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRA 116

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L K PHI+V TPGR++DH+ N K   L  ++ +VLDEAD +LN  F + ++ IL  +P  
Sbjct:   117 LKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              QT LFSATM   ++++    +  P  I+  +K  T+  ++Q Y  V  K K   L  +L
Sbjct:   176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                S    +VF RT      L+  L   G  A  I G ++Q+KR+  L KFK G   +L+
Sbjct:   236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>TIGR_CMR|BA_0247 [details] [associations]
            symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
            HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
            EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
            EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
            GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
            BioCyc:BANT260799:GJAJ-255-MONOMER
            BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
        Length = 528

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 137/331 (41%), Positives = 200/331 (60%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF+ELGL D L+++ E++G++  + IQAE IPHAL+GKD+IG AQTG+GKT AF LP+L 
Sbjct:     3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
                ++  ++ +V      V++PTRELAIQ+ E+   +G    +R   + GG D+ +Q  A
Sbjct:    63 ---KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRA 116

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L K PHI+V TPGR++DH+ N K   L  ++ +VLDEAD +LN  F + ++ IL  +P  
Sbjct:   117 LKKHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPET 175

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              QT LFSATM   ++++    +  P  I+  +K  T+  ++Q Y  V  K K   L  +L
Sbjct:   176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                S    +VF RT      L+  L   G  A  I G ++Q+KR+  L KFK G   +L+
Sbjct:   236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              TDVA+RGLDI  V  V N+DIP + + Y+H
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVH 326


>UNIPROTKB|F1NQV5 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
            Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
        Length = 758

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 141/365 (38%), Positives = 208/365 (56%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+++ L   L++A   +G+K P+ IQ   IP  L GKD+   A TG+GKT AF LP+L+
Sbjct:   181 SFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLE 240

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L+      R  P     VL PTREL IQ+    + L    S+   + VGG+D+  Q  A
Sbjct:   241 RLIY---KPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAA 297

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L   P I++ATPGRL+DHL N   F L +++ L+LDEADR+L++ FE+ + EI+ +  R 
Sbjct:   298 LRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRH 357

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKDCYLVY- 246
             RQT LFSATMT++VK L    LKNP +I   S       L+Q++ R  P +  D   +  
Sbjct:   358 RQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVS 417

Query:   247 -ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
              +LT       M+FT+T      + ++L  +G R   + G++SQ++RL AL +FK  + +
Sbjct:   418 ALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQID 477

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
             IL+ TDVA+RGLDI  V  VIN+ +P  +K Y+H              +SLV + E +  
Sbjct:   478 ILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKML 537

Query:   366 LQIEK 370
              +I K
Sbjct:   538 KEIVK 542


>UNIPROTKB|F1Q073 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
            Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
        Length = 767

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 140/365 (38%), Positives = 207/365 (56%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+++ L   L++A   +G+K P+ IQ   IP  L GKD+   A TG+GKT AFALP+L+
Sbjct:   188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 247

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L+      R  P     VL PTREL IQ+    + L    ++   + VGG+D+  Q  A
Sbjct:   248 RLIY---KPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAA 304

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L   P I++ATPGRL+DHL N   F L +++ L+LDEADR+L++ FE+ + EI+ +    
Sbjct:   305 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHH 364

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKD--CYLV 245
             RQT LFSATMT +VK L    LKNPV+I   S       L+Q++ R  P +  D    + 
Sbjct:   365 RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVA 424

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
              +LT       M+FT+T      + ++L  +G +   + G++SQ++RL AL +FK  + +
Sbjct:   425 ALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQID 484

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
             IL+ TDVA+RGLDI  V  VIN+ +P   K Y+H              +SLV + E +  
Sbjct:   485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKML 544

Query:   366 LQIEK 370
              +I K
Sbjct:   545 KEIVK 549


>UNIPROTKB|J9P9C6 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
            Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
        Length = 788

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 140/365 (38%), Positives = 207/365 (56%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+++ L   L++A   +G+K P+ IQ   IP  L GKD+   A TG+GKT AFALP+L+
Sbjct:   209 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 268

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L+      R  P     VL PTREL IQ+    + L    ++   + VGG+D+  Q  A
Sbjct:   269 RLIY---KPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAA 325

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L   P I++ATPGRL+DHL N   F L +++ L+LDEADR+L++ FE+ + EI+ +    
Sbjct:   326 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHH 385

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKD--CYLV 245
             RQT LFSATMT +VK L    LKNPV+I   S       L+Q++ R  P +  D    + 
Sbjct:   386 RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVA 445

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
              +LT       M+FT+T      + ++L  +G +   + G++SQ++RL AL +FK  + +
Sbjct:   446 ALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQID 505

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
             IL+ TDVA+RGLDI  V  VIN+ +P   K Y+H              +SLV + E +  
Sbjct:   506 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKML 565

Query:   366 LQIEK 370
              +I K
Sbjct:   566 KEIVK 570


>UNIPROTKB|Q96GQ7 [details] [associations]
            symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
            EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
            EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
            EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
            EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
            UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
            MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
            SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
            DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
            UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
            neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
            OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
            NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
            Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
        Length = 796

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 140/365 (38%), Positives = 206/365 (56%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+++ L   L++A   +G+K P+ IQ   IP  L GKD+   A TG+GKT AFALP+L+
Sbjct:   219 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 278

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L+      R  P     VL PTREL IQ+      L    ++   + VGG+D+  Q  A
Sbjct:   279 RLIY---KPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAA 335

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L   P I++ATPGRL+DHL N   F L +++ L+LDEADR+L++ FE+ + EI+ +    
Sbjct:   336 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHH 395

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKD--CYLV 245
             RQT LFSATMT +VK L    LKNPV+I   S       L+Q++ R  P +  D    + 
Sbjct:   396 RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVA 455

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
              +LT       M+FT+T      + ++L  +G +   + G++SQ++RL AL +FK  + +
Sbjct:   456 ALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQID 515

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
             IL+ TDVA+RGLDI  V  VIN+ +P   K Y+H              +SLV + E +  
Sbjct:   516 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKML 575

Query:   366 LQIEK 370
              +I K
Sbjct:   576 KEIVK 580


>UNIPROTKB|Q9KLH6 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 137/368 (37%), Positives = 205/368 (55%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF +LGL   L+     +G   P+ IQ +AIPH L+GKD++  AQTG+GKT AF LP++Q
Sbjct:     7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66

Query:    69 ALLEIA-ENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
               +E   + +       A VL PTRELA Q+ +  +A   G  L+   + GG  M  Q  
Sbjct:    67 RFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLN 126

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
              L     I++ATPGRL+DH  + K   LG ++ LVLDEADR+L+  F   L  +L  +  
Sbjct:   127 HLRGGVDILIATPGRLLDH-AHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
             +RQT  FSAT   K+K +    +++P++++     ST +T++Q    V  K K   L Y+
Sbjct:   186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYL 245

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
             +   +    +VFT+T   +  LA  L+  G +A+ I+G  SQ  R  AL+ FKAG+   L
Sbjct:   246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             I TDVA+RGLDI  ++ V+NYD+P  ++DY+H              +SL++  E      
Sbjct:   306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365

Query:   368 IEKLIGKK 375
             IE+L+  +
Sbjct:   366 IERLLNTR 373


>TIGR_CMR|VC_A0768 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 137/368 (37%), Positives = 205/368 (55%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF +LGL   L+     +G   P+ IQ +AIPH L+GKD++  AQTG+GKT AF LP++Q
Sbjct:     7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66

Query:    69 ALLEIA-ENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
               +E   + +       A VL PTRELA Q+ +  +A   G  L+   + GG  M  Q  
Sbjct:    67 RFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLN 126

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
              L     I++ATPGRL+DH  + K   LG ++ LVLDEADR+L+  F   L  +L  +  
Sbjct:   127 HLRGGVDILIATPGRLLDH-AHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
             +RQT  FSAT   K+K +    +++P++++     ST +T++Q    V  K K   L Y+
Sbjct:   186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYL 245

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
             +   +    +VFT+T   +  LA  L+  G +A+ I+G  SQ  R  AL+ FKAG+   L
Sbjct:   246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             I TDVA+RGLDI  ++ V+NYD+P  ++DY+H              +SL++  E      
Sbjct:   306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365

Query:   368 IEKLIGKK 375
             IE+L+  +
Sbjct:   366 IERLLNTR 373


>UNIPROTKB|F5H1N9 [details] [associations]
            symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AC007215 HGNC:HGNC:18682 ChiTaRS:DDX47 IPI:IPI00792278
            ProteinModelPortal:F5H1N9 SMR:F5H1N9 PRIDE:F5H1N9
            Ensembl:ENST00000544400 ArrayExpress:F5H1N9 Bgee:F5H1N9
            Uniprot:F5H1N9
        Length = 196

 Score = 465 (168.7 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
 Identities = 91/140 (65%), Positives = 116/140 (82%)

Query:   101 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 160
             Q EA+   ++L+ AV+VGG+D M Q+LAL K+PHI++ATPGRL+DHL NTKGF+L  LKY
Sbjct:    51 QIEAIP--LALQ-AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKY 107

Query:   161 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 220
             LV+DEADR+LN DFE  +D+IL VIPR R+T+LFSATMTKKV+KLQRA LKNPVK   +S
Sbjct:   108 LVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 167

Query:   221 KYSTVDTLKQQYRFVPAKYK 240
             KY TV+ L+Q Y F+P+K+K
Sbjct:   168 KYQTVEKLQQYYIFIPSKFK 187

 Score = 141 (54.7 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
 Identities = 26/44 (59%), Positives = 34/44 (77%)

Query:     1 MAEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALE 44
             + EE+E KTFK+LG+ D L EAC+ +GW  P+KIQ EAIP AL+
Sbjct:    17 IVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ 60

 Score = 41 (19.5 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
 Identities = 8/10 (80%), Positives = 10/10 (100%)

Query:   289 QSKRLGALNK 298
             +SKRLG+LNK
Sbjct:   187 KSKRLGSLNK 196


>UNIPROTKB|A1A4H6 [details] [associations]
            symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
            ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
            GeneID:514567 KEGG:bta:514567 CTD:55661
            GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
            HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
            Uniprot:A1A4H6
        Length = 765

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 140/365 (38%), Positives = 206/365 (56%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+++ L   L++A   +G+K P+ IQ   IP  L GKD+   A TG+GKT AFALP+L+
Sbjct:   188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 247

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L+      R  P     VL PTREL IQ+    + L    S+   + VGG+D+  Q  A
Sbjct:   248 RLIY---KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAA 304

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L   P I++ATPGRL+DHL N   F L +++ L+LDEADR+L++ FE+ + EI+ +    
Sbjct:   305 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHH 364

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKD--CYLV 245
             RQT LFSATMT +VK L    LKNPV+I   S       L+Q++ R  P +  D    + 
Sbjct:   365 RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVA 424

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
              +L        M+FT+T      + ++L  +G +   + G++SQ++RL AL +FK  + +
Sbjct:   425 ALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQID 484

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
             IL+ TDVA+RGLDI  V  VIN+ +P   K Y+H              +SLV + E +  
Sbjct:   485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKML 544

Query:   366 LQIEK 370
              +I K
Sbjct:   545 KEIVK 549


>DICTYBASE|DDB_G0281711 [details] [associations]
            symbol:ddx27 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
            GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
            EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
            STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
            KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
        Length = 783

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 134/340 (39%), Positives = 203/340 (59%)

Query:     4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFA 63
             E+E+ TF+EL L   L++A + +G+  P+ IQA+AIP AL GKD++  A TGSGKT AF 
Sbjct:   186 EEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFL 245

Query:    64 LPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123
             LP+L+ LL      R +      +L PTRELA+Q     E L    ++   ++VGG+   
Sbjct:   246 LPVLERLLFRDSEYRAIRVL---ILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNK 302

Query:   124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
              Q + L K P +V+ATPGRL+DHL N  G  L  L+ L+LDEADRLL+  F+  +++I+ 
Sbjct:   303 AQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVE 362

Query:   184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKD- 241
               P  RQT LFSAT+  +VK L +  L+ P++++  +      TL+Q++ +  P    D 
Sbjct:   363 SCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDR 422

Query:   242 -CYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 299
                L+ + T V +   T++F R+      L ++      +A  + G++SQ +R  +L +F
Sbjct:   423 PAILLSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQF 482

Query:   300 KAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             + G+ N L+ +DVASRGLDI  V  VINY++P N  +YIH
Sbjct:   483 RDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIH 522


>ASPGD|ASPL0000072637 [details] [associations]
            symbol:AN4903 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
            EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
            HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
        Length = 525

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 149/386 (38%), Positives = 228/386 (59%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             E  +FK L +   LV +   +  + P+ IQ   IP  L+G+D IG ++TGSGKT AF++P
Sbjct:    93 EENSFKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVP 152

Query:    66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
             ILQ   + AE+   +   FA +L+PTRELA+QI EQ +A+ +  S++  ++ GG DM  Q
Sbjct:   153 ILQ---KWAEDPFGI---FAVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQ 206

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLK---YLVLDEADRLLNDDFEKSLDEI- 181
              + L  RPH+VVATPGRL DH+  +   ++  LK    +VLDEADRLL+      L ++ 
Sbjct:   207 AIELAGRPHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDVE 266

Query:   182 --LNVIP--RMRQTYLFSATMTKKVKKLQ---RACLKNPV---KIEAASKYSTVDTLKQQ 231
               L+ +P    RQT LF+AT+T +V+ L+   +   K P+   +I   +K +   TL+  
Sbjct:   267 TCLSFLPGPSQRQTLLFTATLTPEVRALKSMPQTPGKPPIFVTEISTEAKDTVPPTLRTT 326

Query:   232 YRFVPAKYKDCYL-VYILTEVSAS-STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQ 289
             Y  VP  +++ +L V + TE + + S +VFT T  +  LL  +LR+LG R   +   + Q
Sbjct:   327 YVQVPLTHREAFLHVLLSTESNITKSAIVFTNTTKSADLLERLLRSLGHRVTSLHSLLPQ 386

Query:   290 SKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXX 349
             S+R   L +F+A    +L+ TDVASRGLDIPSV +V+N+++P N  DY+H          
Sbjct:   387 SERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGR 446

Query:   350 XXXXISLVNQYELEWYLQIEKLIGKK 375
                 ++LV Q +++  L IE+ IG+K
Sbjct:   447 TGEAVTLVGQRDVQLVLAIEERIGRK 472


>TAIR|locus:2130918 [details] [associations]
            symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
            OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
            PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
            ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
            PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
            KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
            PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
            GermOnline:AT4G16630 Uniprot:Q9ZRZ8
        Length = 789

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 140/370 (37%), Positives = 202/370 (54%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF EL L   L+ ACE +G+K P+ IQA  IP AL G+DL   A TGSGKT AFALP L+
Sbjct:   168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              LL      + V A    +L+PTRELA+QI    + L     ++C ++VGG+ + +Q + 
Sbjct:   228 RLLF---RPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVV 284

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L   P IVVATPGR++DHL N+    L  L  L+LDEADRLL   F   + E++ + P+ 
Sbjct:   285 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKR 344

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY---RFVPAKYKDCYLV 245
             RQT LFSATMT++VK+L +  L  P+++ A         L ++    R      ++  L+
Sbjct:   345 RQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLL 404

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
              + T    S  ++F+ T  A   L ++    G +A  + G+++Q++RL +L  F+  E +
Sbjct:   405 SLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVD 464

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
              LI TDVA+RGLDI  V  VINY  P     Y+H              ++ V   +    
Sbjct:   465 FLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLL 524

Query:   366 LQIEKLIGKK 375
               I K +G K
Sbjct:   525 KVIAKKVGSK 534


>UNIPROTKB|Q9KMW4 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 145/365 (39%), Positives = 203/365 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F  LGL   +++A E  G+ TPS IQ +AIP  L GKD++  AQTG+GKT  F LPIL+ 
Sbjct:     3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62

Query:    70 LLE---IAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
             L +   +  NQ       A +L+PTRELA QI +     G  + L+ AV+ GGV +  Q 
Sbjct:    63 LAKGPKVRANQVR-----ALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQM 117

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
               + K   I+VATPGRLMD L N        L+ LVLDEADR+L+  F + + +IL ++P
Sbjct:   118 QRMCKGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQ  LFSAT + ++++L +  + NPV+I  +   ST  T++Q       K K   LV 
Sbjct:   177 EKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVK 236

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             ++ E +    +VF RT      LA  L   G  A  I G+ SQ  R  AL  FKAGE  I
Sbjct:   237 LVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRI 296

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TD+A+RG+DIP +  V+N+++P  ++DY+H              ISLV+  E     
Sbjct:   297 LVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELF 356

Query:   367 QIEKL 371
              IE+L
Sbjct:   357 AIERL 361


>TIGR_CMR|VC_A0204 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 145/365 (39%), Positives = 203/365 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F  LGL   +++A E  G+ TPS IQ +AIP  L GKD++  AQTG+GKT  F LPIL+ 
Sbjct:     3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62

Query:    70 LLE---IAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
             L +   +  NQ       A +L+PTRELA QI +     G  + L+ AV+ GGV +  Q 
Sbjct:    63 LAKGPKVRANQVR-----ALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQM 117

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
               + K   I+VATPGRLMD L N        L+ LVLDEADR+L+  F + + +IL ++P
Sbjct:   118 QRMCKGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQ  LFSAT + ++++L +  + NPV+I  +   ST  T++Q       K K   LV 
Sbjct:   177 EKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVK 236

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             ++ E +    +VF RT      LA  L   G  A  I G+ SQ  R  AL  FKAGE  I
Sbjct:   237 LVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRI 296

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TD+A+RG+DIP +  V+N+++P  ++DY+H              ISLV+  E     
Sbjct:   297 LVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELF 356

Query:   367 QIEKL 371
              IE+L
Sbjct:   357 AIERL 361


>MGI|MGI:2385884 [details] [associations]
            symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
            GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 CTD:55661
            GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
            HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
            EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
            EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
            RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
            SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
            Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
            KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
            Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
            GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
        Length = 760

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 141/365 (38%), Positives = 206/365 (56%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+++ L   L++A   +G+K P+ IQ   IP  L GKD+   A TG+GKT AFALP+L+
Sbjct:   185 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 244

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L+     Q  V      VL PTREL IQ+    + L    S+   + VGG+D+  Q  A
Sbjct:   245 RLI-YKPRQAAVTRVL--VLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAA 301

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L   P I++ATPGRL+DHL N   F L +++ L+LDEADR+L++ FE+ + EI+ +    
Sbjct:   302 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHH 361

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKD--CYLV 245
             RQT LFSATMT +VK L    LKNPV+I   S       L+Q++ R  P +  D    + 
Sbjct:   362 RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVA 421

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
              +L        M+FT+T      + ++L  LG +   + G++SQ++RL AL +FK  + +
Sbjct:   422 ALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQID 481

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
             IL+ TDVA+RGLDI  V  VIN+ +P   K Y+H              +SLV + E +  
Sbjct:   482 ILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKML 541

Query:   366 LQIEK 370
              +I K
Sbjct:   542 KEIVK 546


>UNIPROTKB|E1C187 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
            IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
            Uniprot:E1C187
        Length = 759

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 141/366 (38%), Positives = 208/366 (56%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGS-GKTGAFALPIL 67
             +F+++ L   L++A   +G+K P+ IQ   IP  L GKD+   A TG+ GKT AF LP+L
Sbjct:   181 SFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTVGKTAAFILPVL 240

Query:    68 QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
             + L+      R  P     VL PTREL IQ+    + L    S+   + VGG+D+  Q  
Sbjct:   241 ERLIY---KPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEA 297

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             AL   P I++ATPGRL+DHL N   F L +++ L+LDEADR+L++ FE+ + EI+ +  R
Sbjct:   298 ALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSR 357

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKDCYLVY 246
              RQT LFSATMT++VK L    LKNP +I   S       L+Q++ R  P +  D   + 
Sbjct:   358 HRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIV 417

Query:   247 --ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
               +LT       M+FT+T      + ++L  +G R   + G++SQ++RL AL +FK  + 
Sbjct:   418 SALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQI 477

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEW 364
             +IL+ TDVA+RGLDI  V  VIN+ +P  +K Y+H              +SLV + E + 
Sbjct:   478 DILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKM 537

Query:   365 YLQIEK 370
               +I K
Sbjct:   538 LKEIVK 543


>WB|WBGene00022148 [details] [associations]
            symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
            ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
            EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
            UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
            OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
        Length = 739

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 133/356 (37%), Positives = 206/356 (57%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+++ L  ++++AC   G+  P+ IQ   IP AL GKD+   A TG+GKT AF LPIL+
Sbjct:   149 SFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILE 208

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              ++   +           VL PTRELAIQ+ + F  L + I L   +  GG+D+  Q  A
Sbjct:   209 RMIYRPKGASCTRVL---VLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAA 265

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L   P +VVATPGRL+DHL N+  F+L  ++ LVLDEADR+L + F   ++E++ +  + 
Sbjct:   266 LRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQN 325

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY---KDCYLV 245
             RQT LFSATMT+++ +L    L+ PVKI       T   L+Q++  + A     ++  + 
Sbjct:   326 RQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVA 385

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
              ++T    ++T+VF RT    + + ++L  LG +   +   ++Q +R+ +L+KFK  E +
Sbjct:   386 ALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEID 445

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYE 361
             +L+ TD+ASRGLDI  V  VIN ++P + K YIH              ISLV + E
Sbjct:   446 VLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDE 501


>TIGR_CMR|CPS_1125 [details] [associations]
            symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
            ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
            KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
            BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
        Length = 466

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 134/363 (36%), Positives = 204/363 (56%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F +LGL + L++A  + G++TPS IQA+AIP  + G+D++  AQTG+GKT  F LP+LQ 
Sbjct:     8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L     N+ +     A +L+PTRELA QISE  E  G  ++L   V+ GGV +  Q   L
Sbjct:    68 LSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARL 127

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
              +   ++VATPGRL+D L N +      L+  +LDEADR+L+  F + + +++  +P+ R
Sbjct:   128 RQGVDVLVATPGRLLD-LYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDR 186

Query:   190 QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT 249
             Q  LFSAT + +++ L +  + NP++I   ++ ST + + Q    V  K K   L +++ 
Sbjct:   187 QNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTHLIK 246

Query:   250 EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILIC 309
             E +    +VFT+T      L   L   G  A  I G+ SQ  R  AL  FK G   IL+ 
Sbjct:   247 ENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVA 306

Query:   310 TDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIE 369
             TD+A+RG+DI  +  V+N+D+P   +DY+H              +SLV   EL+    IE
Sbjct:   307 TDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWGIE 366

Query:   370 KLI 372
              +I
Sbjct:   367 HVI 369


>UNIPROTKB|Q5L3G9 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
            OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
            ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
            KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
            BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
        Length = 467

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 142/367 (38%), Positives = 209/367 (56%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF+ELGL  E+++A E +G++  + IQA+ IP +L+ KD+IG AQTG+GKT AF +PI++
Sbjct:     3 TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE 62

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              +     N +   A  A V++PTRELAIQ+SE+   +G+   +R   + GG D+ +Q  A
Sbjct:    63 KV-----NVKN-SAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRA 116

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L K PH++V TPGR++DH+ N     L  +  +VLDEAD +LN  F + ++ IL+ +P  
Sbjct:   117 LKKHPHVIVGTPGRIIDHI-NRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAE 175

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             RQT LFSATM   ++++    +  P  ++  +K  TV  ++Q Y  V  K K   L  +L
Sbjct:   176 RQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLL 235

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                +    +VF RT      LA  L   G  A  I G +SQ+KRL  L KFK G   IL+
Sbjct:   236 DIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
              TDVA+RGLDI  V  V N+DIP + + Y+H              ++ V   E+     I
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI 355

Query:   369 EKLIGKK 375
             E+   +K
Sbjct:   356 ERTTKRK 362


>ZFIN|ZDB-GENE-031001-8 [details] [associations]
            symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
            HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
            RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
            PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
            NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
        Length = 776

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 136/365 (37%), Positives = 203/365 (55%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF ++ L   L++A   +G+K P+ IQ   +P  L GKD+   A TG+GKT AF LP+L+
Sbjct:   202 TFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLE 261

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L+      R        VL PTREL IQ+      L    ++   + VGG+D+  Q  A
Sbjct:   262 RLIY---KPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAA 318

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L   P +++ATPGRL+DHL NT  F L  ++ L+LDEADR+L++ FE+ + EI+ +    
Sbjct:   319 LRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQ 378

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKD--CYLV 245
             RQT LFSATM+++VK L    LK PV+I   S       L+Q++ R  P K  D    + 
Sbjct:   379 RQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVA 438

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
              +LT       M+FT+T      + ++L  +G +   + G++SQ++RL +L +FK  + +
Sbjct:   439 ALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQID 498

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
             IL+ TDVA+RGLDI  V  VIN+ +P   K Y+H              +SLV + E +  
Sbjct:   499 ILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKML 558

Query:   366 LQIEK 370
              +I K
Sbjct:   559 KEIVK 563


>UNIPROTKB|Q4K4H4 [details] [associations]
            symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
            species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
            EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
            ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
            PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
        Length = 622

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 142/371 (38%), Positives = 205/371 (55%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F  LGL + LV A E  G+  P+ +Q  AIP  L+G+DL+  AQTG+GKTG FALPIL+
Sbjct:     2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61

Query:    69 ALLEIA---ENQRTVPAF-FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124
              L       ++QR  P      VL+PTRELA Q+ + F+     +    A + GGV M  
Sbjct:    62 RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNP 121

Query:   125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
             Q  A+ +   ++VA PGRL+D L       L  ++ LVLDEADR+L+  F   + ++L  
Sbjct:   122 QVQAMARGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query:   185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244
             +P  RQ  LFSAT +K +  L    L NP +IE     +TV+ ++Q+   +PA +K   L
Sbjct:   181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
              +++T  +    +VFTRT      LA  L   G  A+ I G+ SQ+ R  AL  FKAGE 
Sbjct:   241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEV 300

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEW 364
              IL+ TD+A+RGLDI  +  V+N+++P   +DY+H              ISLV   E + 
Sbjct:   301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query:   365 YLQIEKLIGKK 375
                IE++  +K
Sbjct:   361 LKSIERMTKQK 371


>TIGR_CMR|SO_4034 [details] [associations]
            symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
            acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
            ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
            PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
        Length = 623

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 137/364 (37%), Positives = 208/364 (57%)

Query:     8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL 67
             +TF+ELGL + L+ A + +G++ P+ IQ+ +I   + GKD++G AQTG+GKTGAFALP+L
Sbjct:     6 RTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65

Query:    68 QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQT 126
               +       +T P     VL+PTRELA+Q++E F +    + +     + GG  M QQ 
Sbjct:    66 NKV-----TSQTTPQIL--VLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQL 118

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
              AL + P ++V TPGR+MDH+       L TL+ LVLDEAD +L   F   ++ IL   P
Sbjct:   119 NALKRGPQVIVGTPGRVMDHMRRGT-LKLETLQALVLDEADEMLKMGFIDDIEWILEHTP 177

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQ  LFSATM +++K++    LKN   I  A+ ++TVD+++Q++  V    K   LV 
Sbjct:   178 PQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVR 237

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             +L   +    ++F RT ++   LA  L   G  + P+ G M+Q  R  A+ + K G+ +I
Sbjct:   238 VLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDI 297

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             LI TDVA+RGLD+  +  V+NYDIP +++ Y+H              I  V   E+    
Sbjct:   298 LIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLR 357

Query:   367 QIEK 370
              IE+
Sbjct:   358 TIER 361


>TIGR_CMR|SO_3783 [details] [associations]
            symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
            KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
            Uniprot:Q8EAV8
        Length = 535

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 138/368 (37%), Positives = 205/368 (55%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F  LGL   L +A    G+ TPS IQA+AIP  L GKD++  AQTG+GKT  F LP+L+
Sbjct:     2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61

Query:    69 ALLE--IAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
              L +   A++ +T     A VL+PTRELA Q+ E  E  G  + LR AV+ GGV +  Q 
Sbjct:    62 LLAKGHKAKSGQTR----ALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQI 117

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
               L     ++VATPGRL+D L          L+ LVLDEADR+L+  F + + +IL ++P
Sbjct:   118 NKLRHGVDVLVATPGRLLD-LVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLP 176

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQ  +FSAT + ++++L +  + +PV+I    + +   T+KQ    V    K   L+ 
Sbjct:   177 AKRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQ 236

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             ++ + +    +VF+RT      LA  L      A  I G+ SQ  R  AL  FK+GE  +
Sbjct:   237 LIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRV 296

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TD+A+RGLDI  +  V+N+D+P   +DY+H              +SLV+  E++   
Sbjct:   297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLK 356

Query:   367 QIEKLIGK 374
              IE+LI +
Sbjct:   357 DIERLINR 364


>UNIPROTKB|P25888 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
            GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
            PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
            ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
            MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
            EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
            KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
            EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
            BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
            Genevestigator:P25888 Uniprot:P25888
        Length = 454

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 137/367 (37%), Positives = 202/367 (55%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F  LGL  +++ A    G++ P+ IQ +AIP  LEG+DL+  AQTG+GKT  F LP+LQ
Sbjct:     2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L+    + +      A +L+PTRELA QI E        +++R  V+ GGV +  Q + 
Sbjct:    62 HLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK 121

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L     ++VATPGRL+D L +     L  ++ LVLDEADR+L+  F   +  +L  +P  
Sbjct:   122 LRGGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             RQ  LFSAT +  +K L    L NP++IE A + +  D + Q   FV  K K   L +++
Sbjct:   181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
              + +    +VFTRT      LA  L   G R+  I G+ SQ  R  AL  FK+G+  +L+
Sbjct:   241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
              TD+A+RGLDI  +  V+NY++P   +DY+H              +SLV   E +    I
Sbjct:   301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query:   369 EKLIGKK 375
             EKL+ K+
Sbjct:   361 EKLLKKE 367


>UNIPROTKB|P0A9P6 [details] [associations]
            symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000027 "ribosomal large
            subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
            process" evidence=IGI] [GO:0003724 "RNA helicase activity"
            evidence=IDA] [GO:0070417 "cellular response to cold"
            evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
            GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
            RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
            DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
            PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
            EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
            KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
            EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
            BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
            Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
        Length = 629

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 138/363 (38%), Positives = 200/363 (55%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF +LGL+  ++EA  ++G++ PS IQAE IPH L G+D++G+AQTGSGKT AF+LP+LQ
Sbjct:     7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTL 127
              L    + +   P     VL+PTRELA+Q++E        +  +    L GG     Q  
Sbjct:    67 NL----DPELKAPQIL--VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             AL + P IVV TPGRL+DHL       L  L  LVLDEAD +L   F + ++ I+  IP 
Sbjct:   121 ALRQGPQIVVGTPGRLLDHLKRGT-LDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
               QT LFSATM + ++++ R  +K P ++   S  +T   + Q Y  V    K+  LV  
Sbjct:   180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
             L      + ++F RT +AT  +A  L   G  +  ++G M+Q+ R   L + K G  +IL
Sbjct:   240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             I TDVA+RGLD+  + +V+NYDIP +S+ Y+H              +  V   E      
Sbjct:   300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query:   368 IEK 370
             IE+
Sbjct:   360 IER 362


>TAIR|locus:2152099 [details] [associations]
            symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
            EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
            RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
            ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
            EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
            GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
            PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
            GermOnline:AT5G65900 Uniprot:Q9SB89
        Length = 633

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 135/335 (40%), Positives = 194/335 (57%)

Query:     8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL 67
             KTF+ L L D   ++ + +G+   ++IQA+AIP  + G+D++G A+TGSGKT AF +P +
Sbjct:   154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213

Query:    68 QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
             + L  +    R        V+ PTRELAIQ     + L    S     ++GG     +  
Sbjct:   214 ELLYRVKFTPRNGTGVL--VICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAE 271

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
              L K  +++VATPGRL+DHL NT GF    LK+LV+DEADR+L  +FE+ L +ILN++P+
Sbjct:   272 ILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPK 331

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEA--ASKYSTVDTLKQQYRFVPAKYKDCYLV 245
              RQT LFSAT + KV+ L R  L +PV I+     K  T + L+Q Y  VP+  +  +L+
Sbjct:   332 TRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLL 391

Query:   246 YILTEVSASST-MVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
               L         MVF  TC +T+  A + R +    + I G + Q+KR     +F   E 
Sbjct:   392 TFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAET 451

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              IL+CT+VA+RGLD P VD ++ YD P N  DYIH
Sbjct:   452 GILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIH 486


>UNIPROTKB|Q65N62 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
            EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
            ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
            EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
            GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
            GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
            PATRIC:18946609 ProtClustDB:CLSK886742
            BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
        Length = 487

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 136/367 (37%), Positives = 204/367 (55%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF++  L  +L +A + +G++  + IQA+ IP  L  KD+IG AQTG+GKT AF +P+++
Sbjct:     4 TFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVE 63

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              +     N  + P   A V++PTRELAIQ+SE+   +G     R   + GG D+ +Q  A
Sbjct:    64 KI-----NPES-PNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRA 117

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L K PHI+V TPGRL+DH+ N +   L T+  +VLDEAD +LN  F + ++ IL+ +P  
Sbjct:   118 LKKNPHIIVGTPGRLLDHI-NRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAE 176

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              QT LFSATM   +K++    + NP  ++  +K  TV  ++Q Y  V  + K   L  +L
Sbjct:   177 HQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLL 236

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                S    +VF RT      L   L   G  A  I G ++Q+KR+ AL KFK G   +L+
Sbjct:   237 DIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLV 296

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
              TDVA+RGLDI  V  V N+D+P + + Y+H              ++ +   E +    I
Sbjct:   297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAI 356

Query:   369 EKLIGKK 375
             E+   +K
Sbjct:   357 EQTTKRK 363


>DICTYBASE|DDB_G0282741 [details] [associations]
            symbol:ddx18 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
            GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
            RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
            EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
            KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
        Length = 602

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 133/338 (39%), Positives = 197/338 (58%)

Query:     5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             KE   F  L + +   ++ E +G+K  + IQA++I   LEGKDL+G A+TGSGKT AF +
Sbjct:   116 KESIEFSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLI 175

Query:    65 PILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124
             P ++ L++   N +        ++SPTRELA+QI      L    +    +++GG     
Sbjct:   176 PAIEVLVK--SNFKPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKKP 233

Query:   125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
             +   L K  +++VATPGRL+DHL NTKGF    LK L++DEADR+L   FE+ + +I+  
Sbjct:   234 EEERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKK 293

Query:   185 IPRMRQTYLFSATMTKKVKKLQRACLKN-PVKI--EAASKYSTVDTLKQQYRFVPAKYKD 241
             +P+ RQT LFSAT T+KV  + +  L N PV +  +   + STV+ L+Q Y   P++ + 
Sbjct:   294 VPKTRQTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERRF 353

Query:   242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA 301
               L   L +  +   +VF  +C+A +  A +L  +    + + G   Q KR     +F  
Sbjct:   354 LLLYTFLKKNLSKKIIVFLSSCNAVKYTAELLNYIDIPVLELHGRQKQQKRTNTFYEFVN 413

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              E  ILICTDVA+RGLDIPSVD +I YD P + K+YIH
Sbjct:   414 AEKGILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIH 451


>UNIPROTKB|Q48PB7 [details] [associations]
            symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
            putative" species:264730 "Pseudomonas syringae pv. phaseolicola
            1448A" [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
            activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
            KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
            ProtClustDB:CLSK865855 Uniprot:Q48PB7
        Length = 625

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 139/371 (37%), Positives = 203/371 (54%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F  LGL + LV A E  G+  P+ +Q  AIP  L+G+DL+  AQTG+GKTG FALPIL+
Sbjct:     2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61

Query:    69 ALLEIA---ENQRTVPAF-FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124
              L       ++QR  P      VL+PTRELA Q+ E F+     +    A + GGV M  
Sbjct:    62 RLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNP 121

Query:   125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
             Q  A+ +   ++VA PGRL+D L       L  ++ LVLDEADR+L+  F   + ++L  
Sbjct:   122 QVQAMSRGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query:   185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244
             +P  RQ  LFSAT +  +  L    L NP +IE     +TV+ ++Q+   + A +K   L
Sbjct:   181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLL 240

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
              +++T  +    +VFTRT      LA  L   G  A+ I G+ SQ+ R  AL  FKAG+ 
Sbjct:   241 AHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV 300

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEW 364
              I++ TD+A+RGLDI  +  V+N+++P   +DY+H              ISLV   E + 
Sbjct:   301 RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query:   365 YLQIEKLIGKK 375
                IE++  +K
Sbjct:   361 LKSIERMTKQK 371


>UNIPROTKB|Q83DM8 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
            KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
            BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
        Length = 420

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 138/369 (37%), Positives = 207/369 (56%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+ LGL  EL+ A    G+  P+ +Q +AIP  L+ +D++  AQTG+GKT  F LP+LQ
Sbjct:    11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70

Query:    69 AL-LEIAENQRTV-PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
              L +     QR+  P   A +L+PTRELA+Q+ E   A G  + L+  V+ GGV +  Q 
Sbjct:    71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQI 130

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
               L +   I+VATPGRL+D L N    +L  +++ VLDEADR+L+  F   +  IL ++P
Sbjct:   131 NHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQ  LFSAT +K++K+L    L +P  IE A + +    +      V  + K   L +
Sbjct:   190 ESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSF 249

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             ++   +    +VFTRT      L+  L + G  +  I G+ SQ+ R+ AL +FK G+  +
Sbjct:   250 MIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRV 309

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TDVA+RGLDI  +  VIN+++P  +KDY+H              ISLV+  E+    
Sbjct:   310 LVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLR 369

Query:   367 QIEKLIGKK 375
              IEKL+  K
Sbjct:   370 DIEKLLQSK 378


>TIGR_CMR|CBU_0670 [details] [associations]
            symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
            putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
            GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
            ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
            Uniprot:Q83DM8
        Length = 420

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 138/369 (37%), Positives = 207/369 (56%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+ LGL  EL+ A    G+  P+ +Q +AIP  L+ +D++  AQTG+GKT  F LP+LQ
Sbjct:    11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70

Query:    69 AL-LEIAENQRTV-PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
              L +     QR+  P   A +L+PTRELA+Q+ E   A G  + L+  V+ GGV +  Q 
Sbjct:    71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQI 130

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
               L +   I+VATPGRL+D L N    +L  +++ VLDEADR+L+  F   +  IL ++P
Sbjct:   131 NHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQ  LFSAT +K++K+L    L +P  IE A + +    +      V  + K   L +
Sbjct:   190 ESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSF 249

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             ++   +    +VFTRT      L+  L + G  +  I G+ SQ+ R+ AL +FK G+  +
Sbjct:   250 MIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRV 309

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TDVA+RGLDI  +  VIN+++P  +KDY+H              ISLV+  E+    
Sbjct:   310 LVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLR 369

Query:   367 QIEKLIGKK 375
              IEKL+  K
Sbjct:   370 DIEKLLQSK 378


>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
            symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
            helicase, putative" species:5833 "Plasmodium falciparum"
            [GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
            RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
            EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
            EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
            Uniprot:C6KTE4
        Length = 601

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 131/334 (39%), Positives = 197/334 (58%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             E+K F+EL + D L +  + + + T ++IQA+ IPH L GKD++G A+TGSGKT AF +P
Sbjct:   147 ELK-FEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVP 205

Query:    66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
              +  L  I    +        ++SPTREL +QI +  + L   I     +++GG+   ++
Sbjct:   206 SINILYNIKFLPKNGTGVL--IISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEE 263

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                     +I++ATPGRL+DH+ NTK F    L  L++DEADRLL   FE+ ++ I+  +
Sbjct:   264 KKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRL 323

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV 245
             P+ RQT LFSAT T KV+ L R  L+ P+ IE  +K +TV+ L+Q Y  V    +   L 
Sbjct:   324 PKKRQTALFSATQTTKVESLIRLSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLF 383

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
               L +  +   MVF   C + +    +L  +      I G   Q+KRL + + F A +C 
Sbjct:   384 TFLKKNMSKKIMVFFNNCMSVQFYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAAKCA 443

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             IL+CT+VA+RGLDIP+V+ +I YD P +SK+YIH
Sbjct:   444 ILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIH 477


>UNIPROTKB|C6KTE4 [details] [associations]
            symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
            ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
            GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
            ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
        Length = 601

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 131/334 (39%), Positives = 197/334 (58%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             E+K F+EL + D L +  + + + T ++IQA+ IPH L GKD++G A+TGSGKT AF +P
Sbjct:   147 ELK-FEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVP 205

Query:    66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
              +  L  I    +        ++SPTREL +QI +  + L   I     +++GG+   ++
Sbjct:   206 SINILYNIKFLPKNGTGVL--IISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEE 263

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                     +I++ATPGRL+DH+ NTK F    L  L++DEADRLL   FE+ ++ I+  +
Sbjct:   264 KKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRL 323

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV 245
             P+ RQT LFSAT T KV+ L R  L+ P+ IE  +K +TV+ L+Q Y  V    +   L 
Sbjct:   324 PKKRQTALFSATQTTKVESLIRLSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLF 383

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
               L +  +   MVF   C + +    +L  +      I G   Q+KRL + + F A +C 
Sbjct:   384 TFLKKNMSKKIMVFFNNCMSVQFYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAAKCA 443

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             IL+CT+VA+RGLDIP+V+ +I YD P +SK+YIH
Sbjct:   444 ILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIH 477


>CGD|CAL0000864 [details] [associations]
            symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
            "cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
            GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
            EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
            STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
        Length = 613

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 136/360 (37%), Positives = 210/360 (58%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+ L L   +++    + +  P+ IQ+ +IP AL GKD++  AQTGSGKTGA+ +PI++
Sbjct:   131 SFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIE 190

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTL 127
              LL        V      +L+PTRELA+Q+ E  + L   ++ L   + VGG+++ QQ  
Sbjct:   191 RLLYKPSTSTKV-----IILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEE 245

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
              L  RP IV+ATPGRL+DH+ N+  FS+  ++ LV+DEADR+L + F+  L EIL++IP+
Sbjct:   246 QLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPK 305

Query:   188 -MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY--- 243
               RQT LFSATM  +++ L +  L+ PV+I      S    L QQ  FV  + +D     
Sbjct:   306 HKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQ--FVRIRKRDQLKPA 363

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303
             L+Y L +  +S  +VF    +    L ++L  LG +   + G ++Q +RL  +  FK+ E
Sbjct:   364 LLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLE 423

Query:   304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELE 363
               +LICTD+A+RGLDIP +++VINYD+P   + Y+H              I+ V +   E
Sbjct:   424 VPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQE 483


>UNIPROTKB|Q5ACK7 [details] [associations]
            symbol:DRS1 "ATP-dependent RNA helicase DRS1"
            species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
            response to drug" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
            GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
            GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
            ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
            KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
        Length = 613

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 136/360 (37%), Positives = 210/360 (58%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+ L L   +++    + +  P+ IQ+ +IP AL GKD++  AQTGSGKTGA+ +PI++
Sbjct:   131 SFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIE 190

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTL 127
              LL        V      +L+PTRELA+Q+ E  + L   ++ L   + VGG+++ QQ  
Sbjct:   191 RLLYKPSTSTKV-----IILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEE 245

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
              L  RP IV+ATPGRL+DH+ N+  FS+  ++ LV+DEADR+L + F+  L EIL++IP+
Sbjct:   246 QLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPK 305

Query:   188 -MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY--- 243
               RQT LFSATM  +++ L +  L+ PV+I      S    L QQ  FV  + +D     
Sbjct:   306 HKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQ--FVRIRKRDQLKPA 363

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303
             L+Y L +  +S  +VF    +    L ++L  LG +   + G ++Q +RL  +  FK+ E
Sbjct:   364 LLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLE 423

Query:   304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELE 363
               +LICTD+A+RGLDIP +++VINYD+P   + Y+H              I+ V +   E
Sbjct:   424 VPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQE 483


>SGD|S000003931 [details] [associations]
            symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
            assembly and function" species:4932 "Saccharomyces cerevisiae"
            [GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
            [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
            "ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
            subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
            EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
            KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
            RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
            DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
            PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
            KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
            Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
        Length = 752

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 132/346 (38%), Positives = 204/346 (58%)

Query:     2 AEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61
             A+++  + F  L L   +++   ++G+  PS IQ+  IP AL GKD+I  A TGSGKT A
Sbjct:   225 AKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAA 284

Query:    62 FALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE---QFEALGSGISLRCAVLVG 118
             F +PI++ LL        + +    VL PTRELAIQ+++   Q     SGI+   AV  G
Sbjct:   285 FMIPIIERLLY---KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAV--G 339

Query:   119 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSL 178
             G+++ QQ   L  RP IV+ATPGR +DH+ N+  F++ +++ LV+DEADR+L + F+  L
Sbjct:   340 GLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDEL 399

Query:   179 DEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK 238
             +EI+ ++P  RQ  LFSATM  K+K L    LK PV+I           L Q++  +  +
Sbjct:   400 NEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKR 459

Query:   239 --YKDCYLVYILTEVSASST---MVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRL 293
                K   L  ++ ++  +     +VF    +    L +++  LG     + G ++Q +RL
Sbjct:   460 DHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRL 519

Query:   294 GALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              ++NKFK  E  +LICTD+ASRGLDIP +++VINYD+P + + Y+H
Sbjct:   520 DSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLH 565


>UNIPROTKB|Q0C354 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase RhlE"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
            GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
            BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
        Length = 464

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 137/366 (37%), Positives = 201/366 (54%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F+ LGL   ++ +    G+  P+ IQ +AIP  ++G+D++GLAQTG+GKT AFA PIL  
Sbjct:     9 FQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDR 68

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L   A +   V      VL+PTRELA QI+  F   G+G++LR  ++ GG  +  Q   L
Sbjct:    69 LSRNA-SPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQL 127

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
              +  HI+VATPGRL+D L   +  SL  ++ L+LDEAD++L+  F  +L  I   +P  R
Sbjct:   128 ERGAHILVATPGRLID-LMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKR 186

Query:   190 QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT 249
             QT  FSATM K V+ L    L+NP ++  A   +T   ++Q+  FV    K   L+  + 
Sbjct:   187 QTLFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEKIR 246

Query:   250 EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILIC 309
             +    S +VFTRT      +   L      ++ I G+ SQS+R  AL  FKAG   IL+ 
Sbjct:   247 DPELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVA 306

Query:   310 TDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIE 369
             TD+A+RG+ + ++  VINYD+P   + ++H              IS  ++ E      IE
Sbjct:   307 TDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTLRAIE 366

Query:   370 KLIGKK 375
             KL G K
Sbjct:   367 KLTGLK 372


>TIGR_CMR|SO_1383 [details] [associations]
            symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
            ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
            PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
        Length = 433

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 135/367 (36%), Positives = 205/367 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F+      E++ A  + G++  + IQ +AIP    G+D++  AQTG+GKT AFALPILQ 
Sbjct:     3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query:    70 LLEI-AENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
             ++E  +E  ++       +L+PTRELA Q++E  EA    ++     + GGV +  Q   
Sbjct:    63 MVENPSETLKSNTRVL--ILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQK 120

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L +   I+VATPGRL++HLT     SL ++ +LVLDEADR+L+  F   + +IL  + + 
Sbjct:   121 LKRGADIIVATPGRLLEHLTACN-LSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKK 179

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             RQ  LFSAT +  VKKL    +  P  I A  + +T DT+ Q    V  + K   L  ++
Sbjct:   180 RQNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELI 239

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
              + +    +VFT T DA   L   L   G  +  + G  +Q  R  AL +F +G+  +L+
Sbjct:   240 GKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLV 299

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
              T+VA+RGLDIPS++ V+N+D+P  ++DY+H              IS V++ E      I
Sbjct:   300 ATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADI 359

Query:   369 EKLIGKK 375
             EKLIG+K
Sbjct:   360 EKLIGQK 366


>UNIPROTKB|Q8EBV7 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 126/367 (34%), Positives = 195/367 (53%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F  L L  +LV+    +G++ P+ IQ EAIP  L  +D++  AQTG+GKT AFALPILQ
Sbjct:     2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L+   ++     A  A VL PTRELA+Q+ + F     G  +R  +  GGV +  Q   
Sbjct:    62 LLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAV 121

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
                   +++ATPGRL+DHL      +L  L  LV DEADR+L+  F   +  +L  +P  
Sbjct:   122 FNAGIDVLIATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             RQT LFSAT+   +    +  L++P +IE A   +T   ++Q+   + +  K  ++ +++
Sbjct:   181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLV 240

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                +    ++F+RT      L   L  LG       G +SQ  R   L +FK G   +L+
Sbjct:   241 RSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLV 300

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
              TDVA+RGLDI  +  VIN+++P  ++DYIH              I+L +Q +     ++
Sbjct:   301 ATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360

Query:   369 EKLIGKK 375
             E L+ K+
Sbjct:   361 ETLLDKR 367


>TIGR_CMR|SO_3388 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 126/367 (34%), Positives = 195/367 (53%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F  L L  +LV+    +G++ P+ IQ EAIP  L  +D++  AQTG+GKT AFALPILQ
Sbjct:     2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L+   ++     A  A VL PTRELA+Q+ + F     G  +R  +  GGV +  Q   
Sbjct:    62 LLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAV 121

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
                   +++ATPGRL+DHL      +L  L  LV DEADR+L+  F   +  +L  +P  
Sbjct:   122 FNAGIDVLIATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             RQT LFSAT+   +    +  L++P +IE A   +T   ++Q+   + +  K  ++ +++
Sbjct:   181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLV 240

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                +    ++F+RT      L   L  LG       G +SQ  R   L +FK G   +L+
Sbjct:   241 RSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLV 300

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
              TDVA+RGLDI  +  VIN+++P  ++DYIH              I+L +Q +     ++
Sbjct:   301 ATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360

Query:   369 EKLIGKK 375
             E L+ K+
Sbjct:   361 ETLLDKR 367


>UNIPROTKB|P96614 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
            "response to cold" evidence=IGI] [GO:0010501 "RNA secondary
            structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
            evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
            GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
            EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
            ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
            EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
            PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
            GO:GO:0010501 Uniprot:P96614
        Length = 494

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 132/367 (35%), Positives = 201/367 (54%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF++  L  +L++A   +G++  + IQA+ IP  L  KD+IG AQTG+GKT AF +P+++
Sbjct:     4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVE 63

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              +     N  + P   A V++PTRELAIQ+SE+   +G     +   + GG D+ +Q  A
Sbjct:    64 KI-----NPES-PNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRA 117

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L K P+I+V TPGRL+DH+ N +   L  +  +V+DEAD +LN  F   ++ IL+ +P  
Sbjct:   118 LKKNPNIIVGTPGRLLDHI-NRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSE 176

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              QT LFSATM   +K++    +  P  ++  +K  TV  ++Q Y  V  + K   L  +L
Sbjct:   177 HQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLL 236

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                S    +VF RT      LA  L   G  A  I G ++Q+KR+ AL KFK G   +L+
Sbjct:   237 DIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
              TDVA+RGLDI  V  V N+D+P + + Y+H              ++ +   E      I
Sbjct:   297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356

Query:   369 EKLIGKK 375
             E+   +K
Sbjct:   357 EQTTKRK 363


>TAIR|locus:2086909 [details] [associations]
            symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            [GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0034968
            "histone lysine methylation" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
            RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
            SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
            EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
            GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
            ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
            Uniprot:Q9LIH9
        Length = 568

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 131/333 (39%), Positives = 193/333 (57%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF  L L ++   A + +G++  ++IQA +I   LEGKD++G A+TGSGKT AF +P ++
Sbjct:    90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L +   + R        V+ PTRELAIQ     E L    S   ++++GG +   +   
Sbjct:   150 LLFKERFSPRNGTGVI--VICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQR 207

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             +    ++V+ATPGRL+DHL NTK F    LK LV+DEADR+L ++FE+ +++IL ++P+ 
Sbjct:   208 IASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKT 267

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEA--ASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
             RQT LFSAT T KVK L R  L +PV ++     +  T + L+Q Y  VP+K +   L+ 
Sbjct:   268 RQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLIS 327

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
              L +      MVF  TC + +    +++        I G M Q++R      F   +  I
Sbjct:   328 FLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGI 387

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             L+CTDVA+RGLDIPSVD +I YD P    +YIH
Sbjct:   388 LLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIH 420


>FB|FBgn0021995 [details] [associations]
            symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
            "ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
            GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
            CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
            SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
            KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
            InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
            NextBio:836725 Uniprot:Q7JQN4
        Length = 782

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 131/360 (36%), Positives = 203/360 (56%)

Query:     5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             +++ +F ++ L   L+ A   +G+  P+ IQA  IP AL G+D+ G A TG+GKT A+ L
Sbjct:   154 EQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYML 213

Query:    65 PILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124
             P L+ LL    N + +      VL PTREL  Q+ +  + L    ++   + +GG+D+  
Sbjct:   214 PTLERLLYRPLNNKAITRVL--VLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKA 271

Query:   125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
             Q   L + P IV+ATPGRL+DH+ NT  F+L +++ L+LDEADR+L++ F + + EI+N 
Sbjct:   272 QEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINS 331

Query:   185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKDC- 242
               + RQT LFSATM+++VK L    L  P+K+   +       L+Q++ R    K  D  
Sbjct:   332 CCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 391

Query:   243 -YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA 301
               L  ++        MVF +T      L ++L  LG RA  + G+++Q +RL +L KFK 
Sbjct:   392 PILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKE 451

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYE 361
              + ++LI TDVA+RGLDI  V  VIN+ +P  ++ YIH              +SL  + E
Sbjct:   452 EQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKE 511


>TIGR_CMR|GSU_0914 [details] [associations]
            symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
            GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
            ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
            PATRIC:22024603 ProtClustDB:CLSK924451
            BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
        Length = 447

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 135/364 (37%), Positives = 192/364 (52%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             FK  G    +       G++TP+ IQA+AIP  + G+D++GLAQTG+GKT AFALPIL  
Sbjct:     3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHR 62

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L +  E  R      A V++PTRELA QI++ F  LG    LR   + GGV +  Q   L
Sbjct:    63 LQQ-GERGRVR----ALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKL 117

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
                  +VVA PGRL+DH+       L  L+ LVLDEAD++ +  F   +  +L  +P  R
Sbjct:   118 KAGAEVVVACPGRLLDHIAQGT-IDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRR 176

Query:   190 QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT 249
             QT LFSATM   ++ L +  L +PV ++  +    V      Y  V    K   L+ +L 
Sbjct:   177 QTLLFSATMPIDIRTLAQDILVDPVTVQVGTVAPAVTVAHALYP-VEQHLKTPLLLELLR 235

Query:   250 EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILIC 309
                  S ++FTRT    + L   L   G RA  + G++SQ++R  AL+ F+ G   IL+ 
Sbjct:   236 HTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVA 295

Query:   310 TDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIE 369
             TD+A+RG+D+  V  VINYDIP  ++ YIH               +LV   +      IE
Sbjct:   296 TDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIE 355

Query:   370 KLIG 373
             + +G
Sbjct:   356 RSLG 359


>TIGR_CMR|SPO_1443 [details] [associations]
            symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
            ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
            PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
        Length = 471

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 132/374 (35%), Positives = 209/374 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F EL L  ++++A E  G++TP+ IQA AIP ALEG+D++G+AQTG+GKT +F LP++  
Sbjct:     4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-T 62

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             LL     +  +P   + VL PTRELA Q++E F+     + L  A+L+GGV   +Q   +
Sbjct:    63 LLARGRARARMPR--SLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALI 120

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
              +   +++ATPGRL+DH    K    G ++ +V+DEADR+L+  F   ++ I ++ P  R
Sbjct:   121 DRGVDVLIATPGRLLDHFERGKLLLTG-VQIMVVDEADRMLDMGFIPDIERIFSLTPFTR 179

Query:   190 QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQ-------QYRFVPAKYKDC 242
             QT  FSATM  +++++    L  P +IE A + +  +T++Q         R   A  K  
Sbjct:   180 QTLFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRA 239

Query:   243 YLVYILTEVSASST--MVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK 300
              L  ++       T  ++F        ++A  L+  G  A PI G + QS+R   L+ F+
Sbjct:   240 VLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFR 299

Query:   301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQY 360
              G+  +L+ +DVA+RGLD+PSV  V N+D+P + +DY+H              I+L    
Sbjct:   300 EGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPR 359

Query:   361 ELEWYLQIEKLIGK 374
             + +    IEKLI K
Sbjct:   360 DEKALDAIEKLIQK 373


>UNIPROTKB|Q3AFI3 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 133/369 (36%), Positives = 203/369 (55%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             ++ FK+LGL   L++A  ++G++ P+ IQ EAIP  LEG +L+G A TG+GKT A+ LP+
Sbjct:     1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60

Query:    67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
             LQ +      QR   A    +++PTRELA+Q++++   LG  + +R   + GG  + +Q 
Sbjct:    61 LQRI------QRGKKAQ-VLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQI 113

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
               L +   ++V TPGR++DH+   K F    +K ++LDEAD +L+  F   ++ ILN + 
Sbjct:   114 RGLRQGVEVIVGTPGRILDHI-GRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLT 172

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               +QT LFSAT+   +K + +  L     ++   +  TV  ++Q Y  +P   K   LV 
Sbjct:   173 NRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVS 232

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             IL        +VF RT      +   L   G  A  + G MSQ +R   +  FKAG+  +
Sbjct:   233 ILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTEL 292

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TDVA+RGLDIP V  VIN+DIP N + YIH              I+L+N  E +   
Sbjct:   293 LVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLK 352

Query:   367 QIEKLIGKK 375
              IE+ I K+
Sbjct:   353 AIEEAINKR 361


>TIGR_CMR|CHY_0229 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 133/369 (36%), Positives = 203/369 (55%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             ++ FK+LGL   L++A  ++G++ P+ IQ EAIP  LEG +L+G A TG+GKT A+ LP+
Sbjct:     1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60

Query:    67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
             LQ +      QR   A    +++PTRELA+Q++++   LG  + +R   + GG  + +Q 
Sbjct:    61 LQRI------QRGKKAQ-VLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQI 113

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
               L +   ++V TPGR++DH+   K F    +K ++LDEAD +L+  F   ++ ILN + 
Sbjct:   114 RGLRQGVEVIVGTPGRILDHI-GRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLT 172

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               +QT LFSAT+   +K + +  L     ++   +  TV  ++Q Y  +P   K   LV 
Sbjct:   173 NRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVS 232

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             IL        +VF RT      +   L   G  A  + G MSQ +R   +  FKAG+  +
Sbjct:   233 ILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTEL 292

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TDVA+RGLDIP V  VIN+DIP N + YIH              I+L+N  E +   
Sbjct:   293 LVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLK 352

Query:   367 QIEKLIGKK 375
              IE+ I K+
Sbjct:   353 AIEEAINKR 361


>UNIPROTKB|I3LQ10 [details] [associations]
            symbol:LOC100626268 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
            Uniprot:I3LQ10
        Length = 684

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 135/360 (37%), Positives = 200/360 (55%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+++ L   L++A   +G+K P+ IQ   IP  L GKD+   A TG+GKT AFALP+L+
Sbjct:   212 SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 271

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG----ISLRCAVLVGGVDMMQ 124
              L+      R  P     VL PTREL IQ+    + L       I+    +  GG+D+  
Sbjct:   272 RLIY---KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQSSLCVITTISGLFAGGLDVKS 328

Query:   125 QTLAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
             Q  AL    P I++ATPGRL+DHL N   F L +++ L+LDEADR+L++ FE+ + EI+ 
Sbjct:   329 QEAALRAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 388

Query:   184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKD- 241
             +    RQT LFSATMT +VK L    LKNPV+I   S       L+Q++ R  P +  D 
Sbjct:   389 MCSLHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDR 448

Query:   242 -CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKR-LGALNKF 299
                +  +L        M+FT+T      + ++L  +G +   + G++SQ++R L AL +F
Sbjct:   449 EAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRXLEALWRF 508

Query:   300 KAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQ 359
             K  + +IL+ TDVA+RGLDI  V  VIN+ +P   K Y+H              +SL+ +
Sbjct:   509 KDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLLKE 568


>ASPGD|ASPL0000044206 [details] [associations]
            symbol:AN1949 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
            preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
            "preribosome, large subunit precursor" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
            GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
            ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
            EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
            OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
        Length = 609

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 127/336 (37%), Positives = 193/336 (57%)

Query:     8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL 67
             K F ELGL ++ ++  + +G++T ++IQ   IP  L G+D++G A+TGSGKT AF +P +
Sbjct:   128 KKFTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAI 187

Query:    68 QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
             + L  +    R        V+SPTRELA+QI      L +  S    +++GG +   +  
Sbjct:   188 EMLSALRFKPRNGTGVI--VVSPTRELALQIFGVARELLTAHSQTYGIVIGGANRRAEAE 245

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
              L K  ++++ATPGRL+DHL NT GF    LK LV+DEADR+L   FE  + +I+ ++P 
Sbjct:   246 KLTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPN 305

Query:   188 M-RQTYLFSATMTKKVKKLQRACLK-NP--VKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
               RQT LFSAT T KV+ L R  L+  P  + ++   ++STV+ L+Q Y    A  +   
Sbjct:   306 EDRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLL 365

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303
             L   L        +VF  +C+  +  A +L  +    + + G   Q KR     +F   +
Sbjct:   366 LFSFLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAK 425

Query:   304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
               +LICTDVA+RGLDIP+VD +I +D P +++DYIH
Sbjct:   426 QGVLICTDVAARGLDIPAVDWIIQFDPPDDTRDYIH 461


>UNIPROTKB|Q48AV0 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 135/365 (36%), Positives = 198/365 (54%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF    L   L++A     +  P++IQ ++IP  L   D++  AQTG+GKT AFALPILQ
Sbjct:     6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L+ +   Q   P   A VL+PTRELA Q+ + F   G    +   +  GGV   +Q   
Sbjct:    66 QLISV---QPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISE 122

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L     I++ATPGRL+D L  T+  SL  ++ LV DEADR+L+  F++ +D+I   +P+ 
Sbjct:   123 LKVGVDILIATPGRLLD-LLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT 181

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             +QT LFSAT    + K+ +  L  P  +E   K    D ++Q    V A  K     +++
Sbjct:   182 KQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLI 241

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                +    +VFTRT      LA  +   G +++ I G  SQ  R  AL++FK G+   LI
Sbjct:   242 GSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALI 301

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ- 367
              TDVA+RG+DI  +  VINY++P N++DY+H              +SLV+  E EW L  
Sbjct:   302 ATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGE-EWLLTA 360

Query:   368 IEKLI 372
             IE+L+
Sbjct:   361 IEELL 365


>UNIPROTKB|Q9KU63 [details] [associations]
            symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
            RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
            GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
        Length = 423

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 135/371 (36%), Positives = 211/371 (56%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +KTF +L L   L+EA E +G+  P+++QAEAIP AL+G+D++  A TG+GKT AF +P 
Sbjct:     2 IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61

Query:    67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
             LQ LL+    ++  PA    +L+PTRELA+Q++EQ +AL     L    + GGV   +  
Sbjct:    62 LQYLLDFPR-RKAGPARIL-ILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHA 119

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
               L     IVVATPGRL++++ + + F    +++L+LDEADR+L+  F  ++D +     
Sbjct:   120 DILATTQDIVVATPGRLLEYI-DAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECR 178

Query:   187 RMRQTYLFSATMTKK-VKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKDCYL 244
               +QT LFSAT+  + V+      LK+P  ++A         + Q Y R     +K   L
Sbjct:   179 WRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELL 238

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP---ISGHMSQSKRLGALNKFKA 301
               ILTE  A  ++VF +T +    LA +   L +  IP   I G M Q +R  A+++F+ 
Sbjct:   239 KKILTE-QAERSIVFLKTRER---LADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFRE 294

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYE 361
             G+ NIL+ TDVA+RG+D+P +  VIN+D+P ++  Y+H              ISLV  ++
Sbjct:   295 GDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHD 354

Query:   362 LEWYLQIEKLI 372
                  ++E+ I
Sbjct:   355 QPMMARVERYI 365


>TIGR_CMR|CPS_0042 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 135/365 (36%), Positives = 198/365 (54%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF    L   L++A     +  P++IQ ++IP  L   D++  AQTG+GKT AFALPILQ
Sbjct:     6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L+ +   Q   P   A VL+PTRELA Q+ + F   G    +   +  GGV   +Q   
Sbjct:    66 QLISV---QPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISE 122

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L     I++ATPGRL+D L  T+  SL  ++ LV DEADR+L+  F++ +D+I   +P+ 
Sbjct:   123 LKVGVDILIATPGRLLD-LLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT 181

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             +QT LFSAT    + K+ +  L  P  +E   K    D ++Q    V A  K     +++
Sbjct:   182 KQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLI 241

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                +    +VFTRT      LA  +   G +++ I G  SQ  R  AL++FK G+   LI
Sbjct:   242 GSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALI 301

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ- 367
              TDVA+RG+DI  +  VINY++P N++DY+H              +SLV+  E EW L  
Sbjct:   302 ATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGE-EWLLTA 360

Query:   368 IEKLI 372
             IE+L+
Sbjct:   361 IEELL 365


>TIGR_CMR|VC_0660 [details] [associations]
            symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
            KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
            ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
            KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
        Length = 423

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 135/371 (36%), Positives = 211/371 (56%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +KTF +L L   L+EA E +G+  P+++QAEAIP AL+G+D++  A TG+GKT AF +P 
Sbjct:     2 IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61

Query:    67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
             LQ LL+    ++  PA    +L+PTRELA+Q++EQ +AL     L    + GGV   +  
Sbjct:    62 LQYLLDFPR-RKAGPARIL-ILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHA 119

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
               L     IVVATPGRL++++ + + F    +++L+LDEADR+L+  F  ++D +     
Sbjct:   120 DILATTQDIVVATPGRLLEYI-DAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECR 178

Query:   187 RMRQTYLFSATMTKK-VKKLQRACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKDCYL 244
               +QT LFSAT+  + V+      LK+P  ++A         + Q Y R     +K   L
Sbjct:   179 WRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELL 238

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP---ISGHMSQSKRLGALNKFKA 301
               ILTE  A  ++VF +T +    LA +   L +  IP   I G M Q +R  A+++F+ 
Sbjct:   239 KKILTE-QAERSIVFLKTRER---LADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFRE 294

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYE 361
             G+ NIL+ TDVA+RG+D+P +  VIN+D+P ++  Y+H              ISLV  ++
Sbjct:   295 GDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHD 354

Query:   362 LEWYLQIEKLI 372
                  ++E+ I
Sbjct:   355 QPMMARVERYI 365


>CGD|CAL0003464 [details] [associations]
            symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
            rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
            EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
            RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
            KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
        Length = 908

 Score = 401 (146.2 bits), Expect = 1.6e-54, Sum P(2) = 1.6e-54
 Identities = 93/252 (36%), Positives = 145/252 (57%)

Query:     2 AEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61
             A++ +  +F   GL   ++      G+K P+ IQ + IP  +EG+D++G+A+TGSGKT A
Sbjct:    93 AKKAKAGSFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAA 152

Query:    62 FALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 121
             F LP+++ L       R      A +LSP+RELA+Q  +Q +    G +L+  VL+GG  
Sbjct:   153 FVLPLIERL-----KSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDS 207

Query:   122 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEI 181
             + +    +  +P I+V TPGR + HL     + L T++Y+V DEADRL    F + L+E+
Sbjct:   208 LEEDFSKMMTKPDIIVCTPGRFL-HLKVEMQYDLMTVQYIVFDEADRLFEMGFAEQLNEL 266

Query:   182 LNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV--KIEAASKYSTVDTLKQQYRFVPAKY 239
             L  +P  RQ+ LFSAT+ + +    +A L NPV  +++A SK S  D L+  Y       
Sbjct:   267 LASLPSNRQSLLFSATLPRSLVDFAKAGLTNPVLVRLDAESKIS--DQLQMAYFTTKKNE 324

Query:   240 KDCYLVYILTEV 251
             ++  L+YIL EV
Sbjct:   325 REANLLYILQEV 336

 Score = 199 (75.1 bits), Expect = 1.6e-54, Sum P(2) = 1.6e-54
 Identities = 45/124 (36%), Positives = 66/124 (53%)

Query:   252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311
             S  ST+VF  T      +  +LR+ G     I G + Q  R   L +F+ G  N+L+ TD
Sbjct:   393 SPHSTIVFVPTKHHVEYVTKLLRDAGYLVSYIYGTLDQHARKNQLYQFRVGLTNVLVVTD 452

Query:   312 VASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKL 371
             VA+RG+DIP +  VIN+ +P +SK +IH               S+VN+ EL + L +E  
Sbjct:   453 VAARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELF 512

Query:   372 IGKK 375
             +GKK
Sbjct:   513 LGKK 516


>UNIPROTKB|Q81JK1 [details] [associations]
            symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:1392 "Bacillus anthracis" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
            InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
            RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
            SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
            EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
            EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
            GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
            ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
            BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
        Length = 481

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 131/367 (35%), Positives = 200/367 (54%)

Query:     8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL 67
             K+F    L  E+  A   +G++ P+++Q E IP AL+ KDL+  +QTGSGKT +F +P+ 
Sbjct:     4 KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query:    68 QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
             + ++E  EN+   P   A VL+PTRELA+Q+ E    +G    ++ A + G     +Q L
Sbjct:    64 E-MVEWEENK---PQ--ALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
              L ++ HIVV TPGR++DH+   KG  SL  LKYLV+DEAD +LN  F   ++ I++ +P
Sbjct:   118 ELKQKTHIVVGTPGRVLDHIE--KGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELP 175

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               R T LFSAT+ + V++L R  +  P  IE  +   T D ++     V  + K   L  
Sbjct:   176 TKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKD 235

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             + T  +  S ++F RT +    +   L  +      I G M Q  R G ++ F+ G+   
Sbjct:   236 VTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRY 295

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TDVA+RG+DI ++  VINYDIP   + Y+H              I+ +  YE  +  
Sbjct:   296 LVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLE 355

Query:   367 QIEKLIG 373
             +IE  IG
Sbjct:   356 EIEAYIG 362


>TIGR_CMR|BA_5703 [details] [associations]
            symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
            InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
            RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
            SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
            EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
            EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
            GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
            ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
            BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
        Length = 481

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 131/367 (35%), Positives = 200/367 (54%)

Query:     8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL 67
             K+F    L  E+  A   +G++ P+++Q E IP AL+ KDL+  +QTGSGKT +F +P+ 
Sbjct:     4 KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query:    68 QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
             + ++E  EN+   P   A VL+PTRELA+Q+ E    +G    ++ A + G     +Q L
Sbjct:    64 E-MVEWEENK---PQ--ALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
              L ++ HIVV TPGR++DH+   KG  SL  LKYLV+DEAD +LN  F   ++ I++ +P
Sbjct:   118 ELKQKTHIVVGTPGRVLDHIE--KGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELP 175

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               R T LFSAT+ + V++L R  +  P  IE  +   T D ++     V  + K   L  
Sbjct:   176 TKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKD 235

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             + T  +  S ++F RT +    +   L  +      I G M Q  R G ++ F+ G+   
Sbjct:   236 VTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRY 295

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TDVA+RG+DI ++  VINYDIP   + Y+H              I+ +  YE  +  
Sbjct:   296 LVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLE 355

Query:   367 QIEKLIG 373
             +IE  IG
Sbjct:   356 EIEAYIG 362


>SGD|S000004903 [details] [associations]
            symbol:HAS1 "ATP-dependent RNA helicase" species:4932
            "Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
            activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
            [GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
            evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
            GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
            GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
            PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
            DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
            PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
            KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
            GermOnline:YMR290C Uniprot:Q03532
        Length = 505

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 129/337 (38%), Positives = 190/337 (56%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             V+ F+EL L    ++A E +G+ T + +QA  IP  L G+D++G A+TGSGKT AF +P 
Sbjct:    41 VEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPA 100

Query:    67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
             ++ L  +    R        V++PTRELA+QI      L    S    +++GG +  Q+ 
Sbjct:   101 IELLHSLKFKPRNGTGII--VITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 158

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
               L K  ++++ATPGRL+DHL NTKGF    LK L++DEADR+L   FE  + +I+ ++P
Sbjct:   159 EKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILP 218

Query:   187 RM-RQTYLFSATMTKKVKKLQRACLK-NPVKIEAASKY--STVDTLKQQYRFVPAKYKDC 242
                RQ+ LFSAT T KV+ L R  L+  P+ I    +   ST D L+Q Y    +  +  
Sbjct:   219 NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFL 278

Query:   243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
              L   L        +VF  +C++ +  A +L  +    + + G   Q KR     +F   
Sbjct:   279 LLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNA 338

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             E  ILICTDVA+RGLDIP+VD +I +D P + +DYIH
Sbjct:   339 ERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIH 375


>UNIPROTKB|Q4K8U0 [details] [associations]
            symbol:deaD "Cold-shock DEAD box protein A" species:220664
            "Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
            evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
            GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
            OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
            GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
            ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
            Uniprot:Q4K8U0
        Length = 557

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 133/372 (35%), Positives = 200/372 (53%)

Query:     5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             +E+  F  L L   +V A    G++ PS IQ ++IP  L G D+IG AQTG+GKT AFAL
Sbjct:     3 QEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFAL 62

Query:    65 PILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMM 123
             PIL  +    +  +  P   A +L+PTRELA+Q++  FE     +  +    + GG  M 
Sbjct:    63 PILHRI----DPSKREPQ--ALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMG 116

Query:   124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
              Q  A+     IVVATPGRL DHL   +   L T+ +LVLDEAD +L   F   L+ I  
Sbjct:   117 PQLKAIRNGAQIVVATPGRLCDHLRRDEKV-LATVNHLVLDEADEMLKLGFMDDLEVIFK 175

Query:   184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
              +P  RQT LFSAT+ + ++ +    LK+P  ++  SK  TV  ++Q +  V A  K   
Sbjct:   176 AMPETRQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSA 235

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303
             ++ +L      + ++F RT  AT  LA  L   G +A  ++G ++Q++R   ++  K G 
Sbjct:   236 VLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGR 295

Query:   304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELE 363
              +I++ TDVA+RGLD+P +  V N D+P + + Y+H              + LV   E  
Sbjct:   296 LDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERR 355

Query:   364 WYLQIEKLIGKK 375
                 IE++ G+K
Sbjct:   356 MLQVIERVTGQK 367


>UNIPROTKB|Q8EHT1 [details] [associations]
            symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
            KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
            Uniprot:Q8EHT1
        Length = 447

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 141/379 (37%), Positives = 206/379 (54%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             E  TF ELGL   L +A      K P+++Q  AIP  L G+DL+ L+QTGSGKT AF LP
Sbjct:    15 ESLTFAELGLNAALRKALPT-RLKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLP 73

Query:    66 ILQAL---LEIAENQRTVPAF--FACVLSPTRELAIQISEQFEALGSGIS----LRCAVL 116
             +LQ L   + +    ++VPA    A VL PTRELA+Q+SE   AL S +S    L   +L
Sbjct:    74 LLQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLL 133

Query:   117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176
              GGV + QQ   L  +P +VVATPGRL+D  T +   SL  +K+LVLDEADRLL   F  
Sbjct:   134 CGGVALEQQLADLSAKPQLVVATPGRLLDLCTQSH-ISLDAIKHLVLDEADRLLEMGFWP 192

Query:   177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-PVKIEAASKYSTVDTLKQQYRFV 235
              + +++ ++P+ +QT LFSAT+ + +  L    L N P+K+EA+++ + V  +++Q   V
Sbjct:   193 DMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLV 252

Query:   236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
                 K   L+ +L +      +VF    D    +A  L   G  A  + G   Q+ R   
Sbjct:   253 NKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQT 312

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXIS 355
             L  FKA    +L+ TD+ +RG+ + ++ +VIN D+PT++  Y+H              IS
Sbjct:   313 LADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAIS 372

Query:   356 LVNQYELEWYLQIEKLIGK 374
             LV   E+     I  L  +
Sbjct:   373 LVCHGEMPNLTAIRNLTAR 391


>TIGR_CMR|SO_1136 [details] [associations]
            symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
            KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
            Uniprot:Q8EHT1
        Length = 447

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 141/379 (37%), Positives = 206/379 (54%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             E  TF ELGL   L +A      K P+++Q  AIP  L G+DL+ L+QTGSGKT AF LP
Sbjct:    15 ESLTFAELGLNAALRKALPT-RLKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLP 73

Query:    66 ILQAL---LEIAENQRTVPAF--FACVLSPTRELAIQISEQFEALGSGIS----LRCAVL 116
             +LQ L   + +    ++VPA    A VL PTRELA+Q+SE   AL S +S    L   +L
Sbjct:    74 LLQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLL 133

Query:   117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176
              GGV + QQ   L  +P +VVATPGRL+D  T +   SL  +K+LVLDEADRLL   F  
Sbjct:   134 CGGVALEQQLADLSAKPQLVVATPGRLLDLCTQSH-ISLDAIKHLVLDEADRLLEMGFWP 192

Query:   177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-PVKIEAASKYSTVDTLKQQYRFV 235
              + +++ ++P+ +QT LFSAT+ + +  L    L N P+K+EA+++ + V  +++Q   V
Sbjct:   193 DMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLV 252

Query:   236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
                 K   L+ +L +      +VF    D    +A  L   G  A  + G   Q+ R   
Sbjct:   253 NKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQT 312

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXIS 355
             L  FKA    +L+ TD+ +RG+ + ++ +VIN D+PT++  Y+H              IS
Sbjct:   313 LADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAIS 372

Query:   356 LVNQYELEWYLQIEKLIGK 374
             LV   E+     I  L  +
Sbjct:   373 LVCHGEMPNLTAIRNLTAR 391


>POMBASE|SPAC1F7.02c [details] [associations]
            symbol:has1 "ATP-dependent RNA helicase Has1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
            GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
            ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
            GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
        Length = 578

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 125/338 (36%), Positives = 195/338 (57%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             +++ F +L L + + +A + +G++T ++IQ  +IP  L G+D++G A+TGSGKT AF +P
Sbjct:    87 DIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIP 146

Query:    66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
              ++ L  +    R        ++SPTRELA+QI    + L         +++GG +   +
Sbjct:   147 TIEMLYALKFKPRNGTGVI--IISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAE 204

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                L K  +++VATPGRL+DHL NTKGF    L+ LV+DEADR+L   FE  + +I+ ++
Sbjct:   205 ADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKIL 264

Query:   186 P-RMRQTYLFSATMTKKVKKLQRACLK-NP--VKIEAASKYSTVDTLKQQYRFVPAKYKD 241
             P   RQT LFSAT T KV+ L R  LK  P  V +++    STV+ L+Q Y  V +  + 
Sbjct:   265 PSENRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRF 324

Query:   242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA 301
               L   L        +VF  +C + + +A +L  +    + + G   Q +R     +F  
Sbjct:   325 LLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCN 384

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              E  IL+CT+VA+RGLDIP+VD ++ YD P + +DYIH
Sbjct:   385 AEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIH 422


>UNIPROTKB|Q0C4B9 [details] [associations]
            symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
            GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
            BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
        Length = 536

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 124/334 (37%), Positives = 187/334 (55%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF + GL + +++A    G+  P+ IQ EAIPH L G D+ G+AQTG+GKT AF LP++Q
Sbjct:     5 TFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQ 64

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L      +  +P     +L PTRELA Q++E FE  G  + L  A+L+GGV   +Q   
Sbjct:    65 RL-STGRARARMPR--CLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETL 121

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L +   +++ATPGRLMD     K   +G ++ L++DEADR+L+  F   +++I   +P  
Sbjct:   122 LQRGVDVLIATPGRLMDQFDRGKLLMMG-VETLIIDEADRMLDMGFIPDIEKICAKLPAN 180

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA---KYKDCYLV 245
             RQT LFSAT    +++L +   K+P KIE      T +T+ Q    +P    K +   L 
Sbjct:   181 RQTLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALR 240

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
              ++   +  + +VF        ++A  L   G  A PI G + QS R   L +F+ G+  
Sbjct:   241 RVIEATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLK 300

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +L+ +DVA+RGLDIP V  V N+  P   +DY+H
Sbjct:   301 LLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVH 334


>POMBASE|SPAC31A2.07c [details] [associations]
            symbol:dbp10 "ATP-dependent RNA helicase Dbp10
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
            PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
            EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
            ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
            GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
            Uniprot:Q09719
        Length = 848

 Score = 408 (148.7 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
 Identities = 94/248 (37%), Positives = 141/248 (56%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             +   F+ +GL   L+ A    G+K P+ IQ + IP  LEG+D++G+A+TGSGKT AF +P
Sbjct:    67 KASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIP 126

Query:    66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
             +++ L     N  T     A +LSP RELA+Q  +  +    G  LR   +VGGV + +Q
Sbjct:   127 MIEHLKSTLANSNTR----ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQ 182

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                L  +P IVVATPGR + HL       L +++Y+V DEADRL    F   L EIL+ +
Sbjct:   183 FSLLSGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHAL 241

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNPV--KIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
             P  RQT LFSAT+ + +    +A L++PV  +++  SK S    L+  +  V    ++  
Sbjct:   242 PTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSA--DLQSAFFSVKTAEREAA 299

Query:   244 LVYILTEV 251
             L+ IL ++
Sbjct:   300 LLCILQDI 307

 Score = 182 (69.1 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
 Identities = 40/123 (32%), Positives = 60/123 (48%)

Query:   252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311
             S  ST+VF  T      ++ +L   G     I G + Q  RL  +N F+ G+ N+L+ TD
Sbjct:   345 SPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTD 404

Query:   312 VASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKL 371
             VASRG+DIP +  VINYD P   K ++H               SLV   +  + L ++  
Sbjct:   405 VASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLF 464

Query:   372 IGK 374
             + +
Sbjct:   465 LNR 467


>UNIPROTKB|Q11039 [details] [associations]
            symbol:deaD "Cold-shock DEAD box protein A homolog"
            species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
            GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
            PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
            RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
            PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
            EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
            GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
            PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
            ProtClustDB:CLSK791051 Uniprot:Q11039
        Length = 563

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 132/363 (36%), Positives = 198/363 (54%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF +L +   ++ A  +VG+++P+ IQA  IP  + G D++GLAQTG+GKT AFA+P+L 
Sbjct:    14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTL 127
              + +I      VP   A VL PTRELA+Q++E F   G+ +S L    + GG     Q  
Sbjct:    74 KI-DITSK---VPQ--ALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLA 127

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
              L +   +VV TPGR++DHL       L  + +LVLDEAD +L   F   ++ IL+  P 
Sbjct:   128 GLRRGAQVVVGTPGRMIDHLERAT-LDLSRVDFLVLDEADEMLTMGFADDVERILSETPE 186

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              +Q  LFSATM   ++KL    L +P ++   +K +  + + Q Y  V A+  D  L  +
Sbjct:   187 YKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV-ARKMDA-LTRV 244

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
             L      + +VF RT  AT  +A  LR  G  A  ISG + Q++R   +   + G+ +IL
Sbjct:   245 LEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDIL 304

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             + TDVA+RGLD+  +  V+NYDIP +++ Y+H              +  V+  EL     
Sbjct:   305 VATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKA 364

Query:   368 IEK 370
             IEK
Sbjct:   365 IEK 367


>TIGR_CMR|GSU_0491 [details] [associations]
            symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
            KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
            BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
        Length = 450

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 128/367 (34%), Positives = 196/367 (53%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF EL L   +++A    G+  P+ +QA A+P ALE  DL+  AQTG+GKT AF LP LQ
Sbjct:     2 TFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQ 61

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L    +     P     VL+PTRELA Q+++     G+ + +R   ++GG+    Q   
Sbjct:    62 RLSSPPQGPGRGPRVL--VLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRL 119

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L      +VATPGRL+D L + +   L  L+ LVLDEADR+L+  F   +D I    P  
Sbjct:   120 LSAPVDFIVATPGRLVD-LLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPAT 178

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKYKDCYLVYI 247
             RQT LF+ATM   + +L    L+ P +I+ A   +T + ++Q+        +K+  L ++
Sbjct:   179 RQTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHL 238

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
             +T+ S    ++F+ T      LAL L+  G  A  + G M Q+ R   +   K G   +L
Sbjct:   239 ITDESLRRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLL 298

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             + TDVA+RGLD+  +  VIN+D+P  ++DY+H              IS  +  E+ +  +
Sbjct:   299 VATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLAR 358

Query:   368 IEKLIGK 374
             IE+ IG+
Sbjct:   359 IERYIGQ 365


>TIGR_CMR|DET_0183 [details] [associations]
            symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:243164 "Dehalococcoides ethenogenes 195"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
            STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
            OMA:NFAPAVM ProtClustDB:CLSK837629
            BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
        Length = 560

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 133/354 (37%), Positives = 191/354 (53%)

Query:    20 VEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQ-R 78
             V AC   G++ P+ IQA+AIP  LEG D+IGLAQTG+GKT A+ALP++Q +L     + R
Sbjct:    16 VRAC---GYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLSTPRGRVR 72

Query:    79 TVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVA 138
             T+      VL+PTRELA QI+E F +LG    +R   + GGV+M QQ   L     +VVA
Sbjct:    73 TL------VLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVA 126

Query:   139 TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198
              PGRL+DH+       +  ++ L++DEADR+ +  F+  +  IL  + +  QT LFSATM
Sbjct:   127 CPGRLLDHIWRGT-IDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATM 185

Query:   199 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMV 258
               +V+KL      NPV I+  ++          Y  V    K   L+ IL      S ++
Sbjct:   186 PPEVRKLTLETQTNPVTIQIGTQAPASSVSHSVYP-VKNHQKTPLLIEILKTTETKSVLI 244

Query:   259 FTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLD 318
             F RT      LA  +   G     + G++SQ++R   +  F+ G   IL+ TD+A+RGLD
Sbjct:   245 FARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLD 304

Query:   319 IPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLI 372
             I  +  VINYD+P   +DY H              +SLV   + +    I+KLI
Sbjct:   305 IDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDIQKLI 358


>TIGR_CMR|CPS_1726 [details] [associations]
            symbol:CPS_1726 "RNA helicase DeaD" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
            STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
            OMA:WIVKGVE ProtClustDB:CLSK741103
            BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
        Length = 611

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 137/369 (37%), Positives = 201/369 (54%)

Query:     4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFA 63
             E E   F  LGL + L+ A  ++G+ + + IQA  IP  L GKD++G AQTG+GKT AF 
Sbjct:    11 EPEAVAFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFG 70

Query:    64 LPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDM 122
             LP   AL +I  + +  P     VL+PTRELA+Q++E  E+ G  +  LR A L GG   
Sbjct:    71 LP---ALAKIDTSIKK-PQLM--VLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSY 124

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               Q   L +   +VV TPGRLMDHL   K   L  L+  VLDEAD +LN  F + +  IL
Sbjct:   125 GPQFQQLERGAQVVVGTPGRLMDHLRR-KSLKLDELRVCVLDEADEMLNMGFLEDIQWIL 183

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242
             + IP+  Q  LFSATM   ++K+    LK+P  I+ A+       + Q    V    K  
Sbjct:   184 DHIPKTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMT 243

Query:   243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
              L  I   V   + ++F RT + T  +A  L   G  A+ ++G ++Q++R   +++ K+G
Sbjct:   244 ALERIAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSG 303

Query:   303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
             + +IL+ TDV +RGLDIP + +VINYD+P +++ Y+H              I+ V   E+
Sbjct:   304 KSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREM 363

Query:   363 EWYLQIEKL 371
                   E+L
Sbjct:   364 YSIRHYERL 372


>UNIPROTKB|Q9KS53 [details] [associations]
            symbol:VC1407 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 126/365 (34%), Positives = 198/365 (54%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F +LGL D LV+    +G++ P+ IQ +AIP  L+G+DLI  AQTG+GKT +F LPIL+
Sbjct:     2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L +  + QR      A +L PTRELA+Q++E+ E  G    L+   + GGVD   Q   
Sbjct:    62 KLRQ-GQTQRK-KRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQR 119

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L     ++VATPGRLMD L   +      ++ +VLDEADR+L+  F +S+++I++ +P  
Sbjct:   120 LIDGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSE 178

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              Q  LFSAT+++KV++L +  +++P +I  A+  ++   + Q    V    K   L +++
Sbjct:   179 VQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLI 238

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
              E      ++F  T      L   L   G  A       SQ+ R   L  FK+G+   L+
Sbjct:   239 NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 298

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
              T VA+RG+DI  +  V+NYD+P  + +Y+H              IS V++   +    I
Sbjct:   299 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMI 358

Query:   369 EKLIG 373
             E  +G
Sbjct:   359 ESRLG 363


>TIGR_CMR|VC_1407 [details] [associations]
            symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 126/365 (34%), Positives = 198/365 (54%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F +LGL D LV+    +G++ P+ IQ +AIP  L+G+DLI  AQTG+GKT +F LPIL+
Sbjct:     2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L +  + QR      A +L PTRELA+Q++E+ E  G    L+   + GGVD   Q   
Sbjct:    62 KLRQ-GQTQRK-KRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQR 119

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L     ++VATPGRLMD L   +      ++ +VLDEADR+L+  F +S+++I++ +P  
Sbjct:   120 LIDGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSE 178

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              Q  LFSAT+++KV++L +  +++P +I  A+  ++   + Q    V    K   L +++
Sbjct:   179 VQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLI 238

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
              E      ++F  T      L   L   G  A       SQ+ R   L  FK+G+   L+
Sbjct:   239 NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 298

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
              T VA+RG+DI  +  V+NYD+P  + +Y+H              IS V++   +    I
Sbjct:   299 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMI 358

Query:   369 EKLIG 373
             E  +G
Sbjct:   359 ESRLG 363


>CGD|CAL0003050 [details] [associations]
            symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
            "ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
            "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
            [GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
            InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
            RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
            GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
            Uniprot:Q5AK59
        Length = 565

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 124/341 (36%), Positives = 190/341 (55%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             +  E   F+     +  ++A + +G+   +K+QA+ IP  L G+D++G A+TGSGKT AF
Sbjct:   103 DSSEDVLFENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAF 162

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
              +P ++ L  +    R   A    +++PTRELA+QI      L    S  C +++GG D 
Sbjct:   163 LIPAIELLYSLKIKPRNGTAVI--IITPTRELALQIFGVARELMQFHSQTCGIVIGGADR 220

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
              Q+   L K  +++VATPGRL+DHL NT+ F    LK LV+DEADR+L   FE  + +I+
Sbjct:   221 RQEATKLAKGVNLLVATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQII 279

Query:   183 NVIPRM-RQTYLFSATMTKKVKKLQRACLK-NPVKIEAASK--YSTVDTLKQQYRFVPAK 238
              V+P   RQ+ LFSAT T KV+ L R  L+  P+ I    +   ST D L+Q Y    + 
Sbjct:   280 KVLPNENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSD 339

Query:   239 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
              +   L   L        +VF  +C++ +  + +L  +    + + G   Q KR     +
Sbjct:   340 KRFLLLFSFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFE 399

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             F   +  IL+CTDVA+RGLDIP+VD ++ +D P + +DYIH
Sbjct:   400 FCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIH 440


>UNIPROTKB|P21507 [details] [associations]
            symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
            evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
            evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
            EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
            EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
            OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
            PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
            ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
            MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
            EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
            KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
            EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
            BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
            Genevestigator:P21507 Uniprot:P21507
        Length = 444

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 127/357 (35%), Positives = 191/357 (53%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             V TF EL L + L+EA ++ G+  P+ IQA AIP AL+G+D++G A TG+GKT A+ LP 
Sbjct:     3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query:    67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
             LQ LL+    +   P     +L+PTRELA+Q+S+    L     L  A + GGV  M   
Sbjct:    63 LQHLLDFPRKKSGPPRIL--ILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHA 120

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
                 +   IVVAT GRL+ ++   + F    ++ L+LDEADR+L+  F + ++ I     
Sbjct:   121 EVFSENQDIVVATTGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR 179

Query:   187 RMRQTYLFSATMT-KKVKKLQRACLKNPVKIEAASKYSTVDTLKQ-QYRFVPAKYKDCYL 244
               +QT LFSAT+    ++      L++PV++ A         + Q  YR    ++K   L
Sbjct:   180 WRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALL 239

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
             V++L +  A+ ++VF R  +    LA  LR  G     + G M Q KR  A+ +   G  
Sbjct:   240 VHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYE 361
             N+L+ TDVA+RG+DIP V  V N+D+P +   Y+H              ISLV  ++
Sbjct:   300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 356


>UNIPROTKB|Q5AK59 [details] [associations]
            symbol:HAS1 "ATP-dependent RNA helicase HAS1"
            species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
            subunit biogenesis" evidence=IGI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
            GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
            EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
            STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
            KEGG:cal:CaO19.3962 Uniprot:Q5AK59
        Length = 565

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 124/341 (36%), Positives = 190/341 (55%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             +  E   F+     +  ++A + +G+   +K+QA+ IP  L G+D++G A+TGSGKT AF
Sbjct:   103 DSSEDVLFENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAF 162

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
              +P ++ L  +    R   A    +++PTRELA+QI      L    S  C +++GG D 
Sbjct:   163 LIPAIELLYSLKIKPRNGTAVI--IITPTRELALQIFGVARELMQFHSQTCGIVIGGADR 220

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
              Q+   L K  +++VATPGRL+DHL NT+ F    LK LV+DEADR+L   FE  + +I+
Sbjct:   221 RQEATKLAKGVNLLVATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQII 279

Query:   183 NVIPRM-RQTYLFSATMTKKVKKLQRACLK-NPVKIEAASK--YSTVDTLKQQYRFVPAK 238
              V+P   RQ+ LFSAT T KV+ L R  L+  P+ I    +   ST D L+Q Y    + 
Sbjct:   280 KVLPNENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSD 339

Query:   239 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
              +   L   L        +VF  +C++ +  + +L  +    + + G   Q KR     +
Sbjct:   340 KRFLLLFSFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFE 399

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             F   +  IL+CTDVA+RGLDIP+VD ++ +D P + +DYIH
Sbjct:   400 FCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIH 440


>ASPGD|ASPL0000054300 [details] [associations]
            symbol:AN0583 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
            STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
            KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
            OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
        Length = 936

 Score = 406 (148.0 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
 Identities = 95/244 (38%), Positives = 144/244 (59%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F+ +GL   L++A    G+  P+ IQ + IP  +E +D++G+A+TGSGKT AF +P+++ 
Sbjct:    93 FQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEK 152

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L    ++  T       +LSP+RELA+Q  +  + LG G  L+  +LVGG  + +Q   +
Sbjct:   153 L----KSHSTKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMM 208

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
                P IV+ATPGR + HL       L ++KY+V DEADRL    F   L EIL+ +P  R
Sbjct:   209 AGNPDIVIATPGRFL-HLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTR 267

Query:   190 QTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
             QT LFSAT+ K + +  RA L++P  V+++  SK S    L+  +  V +  K+  L+YI
Sbjct:   268 QTLLFSATLPKSLVEFARAGLQDPTLVRLDTESKISP--DLQNAFFSVKSAEKEGALLYI 325

Query:   248 LTEV 251
             L EV
Sbjct:   326 LNEV 329

 Score = 175 (66.7 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
 Identities = 40/121 (33%), Positives = 60/121 (49%)

Query:   255 STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVAS 314
             ST+VF  T      L  +LR  G     + G + Q+ R   +  F+ G  NIL+ TDVA+
Sbjct:   375 STIVFAATKHHVDYLYSLLREAGFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAA 434

Query:   315 RGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGK 374
             RG+DIP +  VINYD P+  K ++H               SLV   +  + L ++  +G+
Sbjct:   435 RGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGR 494

Query:   375 K 375
             K
Sbjct:   495 K 495


>DICTYBASE|DDB_G0292992 [details] [associations]
            symbol:helA "putative RNA helicase" species:44689
            "Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
            GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
            RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
            EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
            OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
        Length = 1091

 Score = 414 (150.8 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
 Identities = 98/250 (39%), Positives = 144/250 (57%)

Query:     4 EKEVKT--FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61
             +K+ KT  F+ + L   L++A    G+  P+ IQ ++IP  L+G D++G+A+TGSGKTGA
Sbjct:   224 KKKKKTGGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGA 283

Query:    62 FALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 121
             F +P++Q L    ++  TV    A +LSPTRELAIQ  +  +    G  LR  ++VGG  
Sbjct:   284 FVIPMIQKL---GDHSTTV-GVRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDS 339

Query:   122 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEI 181
             M  Q   L + P I++ATPGRLM HL  T G SL  ++Y+V DEADRL    F + L EI
Sbjct:   340 MEDQFTDLARNPDIIIATPGRLMHHLLET-GMSLSKVQYIVFDEADRLFEMGFNEQLTEI 398

Query:   182 LNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241
             L+ +   RQT LFSAT+   +    RA L NP  I   +     + L   +  +  + K 
Sbjct:   399 LSKLSENRQTLLFSATLPSLLVDFVRAGLNNPKLINLDTDTKISENLSLSFFTLRHEEKL 458

Query:   242 CYLVYILTEV 251
               L+++L ++
Sbjct:   459 GVLLFLLKDI 468

 Score = 169 (64.5 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
 Identities = 36/122 (29%), Positives = 63/122 (51%)

Query:   254 SSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA 313
             SST++F  T      + ++L   G  +  I G++    R   L KF++ +  +++ TD+A
Sbjct:   498 SSTIIFVSTKYHVEFIHILLERAGIASTYIHGYLDPVARKINLAKFRSHQVGVMVVTDLA 557

Query:   314 SRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIG 373
             +RG+DIP +D VIN+D P   K +IH               SLV+  E+ + + +   +G
Sbjct:   558 ARGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSLVSPDEVPYMIDLHLYLG 617

Query:   374 KK 375
             +K
Sbjct:   618 RK 619


>MGI|MGI:1914192 [details] [associations]
            symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
            GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
            OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
            EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
            ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
            PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
            Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
            InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
            Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
        Length = 660

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 123/328 (37%), Positives = 192/328 (58%)

Query:    15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIA 74
             + +  ++A E +G+K  ++IQ ++I   LEG+DL+  A+TGSGKT AF +P+++ ++++ 
Sbjct:   176 VNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLK 235

Query:    75 ENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPH 134
                R        +LSPTRELA+Q     + L +       +++GG +   +   L    +
Sbjct:   236 FMPRNGTGVL--ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGIN 293

Query:   135 IVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194
             I+VATPGRL+DH+ NT GF    L+ LV+DEADR+L+  FE+ L +I+ ++P  RQT LF
Sbjct:   294 IIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLF 353

Query:   195 SATMTKKVKKLQRACLKN-P--VKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV 251
             SAT T+KV+ L R  LK  P  V ++   + +TVD L+Q Y   P++ +   L   L + 
Sbjct:   354 SATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKN 413

Query:   252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311
                  MVF  +C + +    +L  +    + I G   Q+KR     +F   +  IL+CTD
Sbjct:   414 RKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTD 473

Query:   312 VASRGLDIPSVDMVINYDIPTNSKDYIH 339
             VA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   474 VAARGLDIPEVDWIVQYDPPDDPKEYIH 501


>RGD|1549712 [details] [associations]
            symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
            species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
            GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
            OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
            RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
            Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
            UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
            Genevestigator:Q5XHY0 Uniprot:Q5XHY0
        Length = 674

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 124/328 (37%), Positives = 192/328 (58%)

Query:    15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIA 74
             + +  ++A E +G+K  ++IQ ++I   LEG+DL+  A+TGSGKT AF +P+++ ++++ 
Sbjct:   190 VNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLK 249

Query:    75 ENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPH 134
                R        +LSPTRELA+Q     + L +       +++GG +   +   L    +
Sbjct:   250 FMPRNGTGVL--ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGIN 307

Query:   135 IVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194
             IVVATPGRL+DH+ NT GF    L+ LV+DEADR+L+  FE+ L +I+ ++P  RQT LF
Sbjct:   308 IVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLF 367

Query:   195 SATMTKKVKKLQRACLKN-P--VKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV 251
             SAT T+KV+ L R  LK  P  V ++   + +TVD L+Q Y   P++ +   L   L + 
Sbjct:   368 SATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKN 427

Query:   252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311
                  MVF  +C + +    +L  +    + I G   Q+KR     +F   +  IL+CTD
Sbjct:   428 RKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTD 487

Query:   312 VASRGLDIPSVDMVINYDIPTNSKDYIH 339
             VA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   488 VAARGLDIPEVDWIVQYDPPDDPKEYIH 515


>UNIPROTKB|D4A824 [details] [associations]
            symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
            norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
            ArrayExpress:D4A824 Uniprot:D4A824
        Length = 662

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 124/328 (37%), Positives = 192/328 (58%)

Query:    15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIA 74
             + +  ++A E +G+K  ++IQ ++I   LEG+DL+  A+TGSGKT AF +P+++ ++++ 
Sbjct:   178 VNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLK 237

Query:    75 ENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPH 134
                R        +LSPTRELA+Q     + L +       +++GG +   +   L    +
Sbjct:   238 FMPRNGTGVL--ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGIN 295

Query:   135 IVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194
             IVVATPGRL+DH+ NT GF    L+ LV+DEADR+L+  FE+ L +I+ ++P  RQT LF
Sbjct:   296 IVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLF 355

Query:   195 SATMTKKVKKLQRACLKN-P--VKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV 251
             SAT T+KV+ L R  LK  P  V ++   + +TVD L+Q Y   P++ +   L   L + 
Sbjct:   356 SATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKN 415

Query:   252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311
                  MVF  +C + +    +L  +    + I G   Q+KR     +F   +  IL+CTD
Sbjct:   416 RKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTD 475

Query:   312 VASRGLDIPSVDMVINYDIPTNSKDYIH 339
             VA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   476 VAARGLDIPEVDWIVQYDPPDDPKEYIH 503


>TIGR_CMR|CPS_2658 [details] [associations]
            symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
            ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
            PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
            Uniprot:Q480Z7
        Length = 399

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 123/367 (33%), Positives = 195/367 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             FK   L + +++     G+K P+ IQ E IP  + G DL+G+AQTG+GKT AF+LPI+  
Sbjct:     4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIIN- 62

Query:    70 LLEIAENQRTVPAFF--ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
               +   N+  + A    + +L+PTRELA QI +  +    G+ L+  V+ GGV    Q  
Sbjct:    63 --KFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVD 120

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             ++     I+VATPGRL+D L  T   +   L+  VLDEAD +L+  F K +  I++ +P+
Sbjct:   121 SIELGLDILVATPGRLLD-LIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPK 179

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQT LFSATM  +++ L  A L +P KI+  ++  T+D + Q    +    K   L  I
Sbjct:   180 SRQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFNI 239

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
             LT+      ++F +T     ++   L      A  +    +Q+ R  AL  FK     +L
Sbjct:   240 LTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVL 299

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             + TDVA+RG+D+ ++ +VINY++P + ++YIH              IS   + ++     
Sbjct:   300 VATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTN 359

Query:   368 IEKLIGK 374
             IE  IG+
Sbjct:   360 IENSIGQ 366


>UNIPROTKB|Q9KLE2 [details] [associations]
            symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
            process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
            ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
            KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
            Uniprot:Q9KLE2
        Length = 663

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 132/363 (36%), Positives = 193/363 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F +L L   ++ A   +G+ +P+ IQA AIP  LEG+D +G AQTG+GKT AF+LP+L  
Sbjct:    28 FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTLA 128
             L  +++ +   P   A V++PTRELAIQ++ + + LG  I  L+   + GG  ++ Q  A
Sbjct:    88 L-NLSQYK---PQ--AIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRA 141

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L    HIVV TPGR+ D +T  +   L      +LDEAD +L   F   +  I+   P  
Sbjct:   142 LKSGAHIVVGTPGRVKDLITRDR-LHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES 200

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              Q  LFSATM   VK++    L+NP  ++ A    TV  ++QQY  V    KD  +  +L
Sbjct:   201 AQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL 260

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                   +++VF RT   T  LA  L   G +A  + G + QS R   ++  K G  +IL+
Sbjct:   261 ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 320

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
              TDV +RGLD+P +  V NYDIP + + YIH              I LV   ++     I
Sbjct:   321 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 380

Query:   369 EKL 371
             E++
Sbjct:   381 ERV 383


>TIGR_CMR|VC_A0804 [details] [associations]
            symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
            ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
            KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
            Uniprot:Q9KLE2
        Length = 663

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 132/363 (36%), Positives = 193/363 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F +L L   ++ A   +G+ +P+ IQA AIP  LEG+D +G AQTG+GKT AF+LP+L  
Sbjct:    28 FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTLA 128
             L  +++ +   P   A V++PTRELAIQ++ + + LG  I  L+   + GG  ++ Q  A
Sbjct:    88 L-NLSQYK---PQ--AIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRA 141

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L    HIVV TPGR+ D +T  +   L      +LDEAD +L   F   +  I+   P  
Sbjct:   142 LKSGAHIVVGTPGRVKDLITRDR-LHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES 200

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              Q  LFSATM   VK++    L+NP  ++ A    TV  ++QQY  V    KD  +  +L
Sbjct:   201 AQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL 260

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
                   +++VF RT   T  LA  L   G +A  + G + QS R   ++  K G  +IL+
Sbjct:   261 ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 320

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
              TDV +RGLD+P +  V NYDIP + + YIH              I LV   ++     I
Sbjct:   321 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 380

Query:   369 EKL 371
             E++
Sbjct:   381 ERV 383


>UNIPROTKB|Q8EDC4 [details] [associations]
            symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
            GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
            Uniprot:Q8EDC4
        Length = 449

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 126/368 (34%), Positives = 200/368 (54%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F +  L   L+++ +++G  TP+ IQ +A+P AL GKDL+  ++TGSGKT AF LP LQ 
Sbjct:     3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             ++      +  P     +L PTRELA Q+  Q   L +    +   ++GG +   Q  AL
Sbjct:    63 VISTRALSKRDPRVL--ILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RM 188
              K PH +VATPGR+ DHL   K   L  L+ L+LDEADR+L+  F   L  I      + 
Sbjct:   121 AKEPHFIVATPGRIADHLEQ-KNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKR 179

Query:   189 RQTYLFSATMT-KKVKKLQRACLKNPVKIEAASKYSTVDTLKQQ-YRFVPAKYKDCYLVY 246
             RQT +FSAT+   ++ ++  A LKNP+ +   + ++    + Q+ Y      +K+  L  
Sbjct:   180 RQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSR 239

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             +L++ S    ++FT T   T  LA  L   G     +SG + Q+ R   +++F  G+  I
Sbjct:   240 LLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQI 299

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TDVASRGLD+ +V +VIN+D+P  +++Y+H              ISLV   + + + 
Sbjct:   300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFK 359

Query:   367 QIEKLIGK 374
             +++  + K
Sbjct:   360 KVQLFLRK 367


>TIGR_CMR|SO_2838 [details] [associations]
            symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
            GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
            Uniprot:Q8EDC4
        Length = 449

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 126/368 (34%), Positives = 200/368 (54%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F +  L   L+++ +++G  TP+ IQ +A+P AL GKDL+  ++TGSGKT AF LP LQ 
Sbjct:     3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             ++      +  P     +L PTRELA Q+  Q   L +    +   ++GG +   Q  AL
Sbjct:    63 VISTRALSKRDPRVL--ILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RM 188
              K PH +VATPGR+ DHL   K   L  L+ L+LDEADR+L+  F   L  I      + 
Sbjct:   121 AKEPHFIVATPGRIADHLEQ-KNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKR 179

Query:   189 RQTYLFSATMT-KKVKKLQRACLKNPVKIEAASKYSTVDTLKQQ-YRFVPAKYKDCYLVY 246
             RQT +FSAT+   ++ ++  A LKNP+ +   + ++    + Q+ Y      +K+  L  
Sbjct:   180 RQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSR 239

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             +L++ S    ++FT T   T  LA  L   G     +SG + Q+ R   +++F  G+  I
Sbjct:   240 LLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQI 299

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TDVASRGLD+ +V +VIN+D+P  +++Y+H              ISLV   + + + 
Sbjct:   300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFK 359

Query:   367 QIEKLIGK 374
             +++  + K
Sbjct:   360 KVQLFLRK 367


>FB|FBgn0025140 [details] [associations]
            symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
            [GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
            evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
            "nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
            EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
            UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
            DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
            EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
            KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
            GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
            PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
            Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
        Length = 680

 Score = 511 (184.9 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
 Identities = 116/341 (34%), Positives = 194/341 (56%)

Query:     4 EKEVKTFKEL--GLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61
             + + ++F  L   + +  + A + +G+   ++IQ++++   L+G+DL+G AQTGSGKT A
Sbjct:   181 DSDDRSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLA 240

Query:    62 FALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 121
             F +P ++ + ++    R        ++SPTREL++Q     + L +       +++GG +
Sbjct:   241 FLIPAVELINKLRFMPRNGTGVI--IISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSN 298

Query:   122 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEI 181
                ++  LGK  +I+VATPGRL+DHL N+  F    L+ L++DE DR+L   FE+ L +I
Sbjct:   299 RQVESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQI 358

Query:   182 LNVIPRMRQTYLFSATMTKKVKKLQRACLKN-PVKIEAASKY--STVDTLKQQYRFVPAK 238
             +N++P+ RQT LFSAT T +++ L +  LK+ P+ +        +TVD L+Q Y   P++
Sbjct:   359 INLLPKRRQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSE 418

Query:   239 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
              +   L   L +      MVF  +C + +    +   +      I G   Q+KR     +
Sbjct:   419 KRLLVLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQ 478

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             F   E  IL+CTDVA+RGLDIP VD ++ YD P + ++YIH
Sbjct:   479 FCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIH 519

 Score = 42 (19.8 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query:   357 VNQYELEWY------LQIEKLIGK 374
             +N++E  W       LQ+EKLI K
Sbjct:   556 LNEFEFSWQKIADIQLQLEKLIAK 579


>WB|WBGene00015232 [details] [associations]
            symbol:B0511.6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0040007 "growth"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
            GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
            PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
            DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
            EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
            KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
            InParanoid:O61815 NextBio:877669 Uniprot:O61815
        Length = 544

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 127/337 (37%), Positives = 195/337 (57%)

Query:     9 TFKEL-G-LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             TF  L G +   L++A + +G+ T ++IQA++I   LEGKD++  A+TGSGKT AF LP 
Sbjct:    67 TFASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPA 126

Query:    67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
             ++ L ++   Q         ++SPTREL++Q       L  G +L   +++GG +   + 
Sbjct:   127 IELLHKLNWKQHNGTGVI--IVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEK 184

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
               L K   I+VATPGRL+DHL NT  F +  +K L++DEADR+L+  FE  + ++L  +P
Sbjct:   185 DKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLP 244

Query:   187 RMRQTYLFSATMTKKVKKLQRACL-KNPVKIEAASKY--STVDTLKQQYRFVPAKYKDCY 243
             + RQ+ LFSAT + KV +L +  L  NPV++    K   +TV+ L+Q Y   P+  +   
Sbjct:   245 KQRQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLL 304

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303
             L   L +      MVF  +C++ +    +L  +    + I G   Q KR     +F   E
Sbjct:   305 LFTFLKKNKTKKVMVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAE 364

Query:   304 CNILICTDVASRGLDIPSVDMVINYDIPTNS-KDYIH 339
               IL+CTDVA+RGLDIP+VD ++ YD PT+  ++YIH
Sbjct:   365 TGILLCTDVAARGLDIPAVDWIVQYD-PTDEPREYIH 400


>UNIPROTKB|E2RFA3 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
            CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
            Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
            Uniprot:E2RFA3
        Length = 669

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 122/328 (37%), Positives = 189/328 (57%)

Query:    15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIA 74
             + +  ++A + +G+   ++IQ ++I   LEG+DL+  A+TGSGKT AF +P ++ ++++ 
Sbjct:   185 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLK 244

Query:    75 ENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPH 134
                R        +LSPTRELA+Q     + L         +++GG +   +   LG   +
Sbjct:   245 FMPRNGTGVL--ILSPTRELAMQTFGVLKELMMYHVHTYGLIMGGSNRSAEAQKLGNGIN 302

Query:   135 IVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194
             I+VATPGRL+DH+ NT GF    L+ LV+DEADR+L+  FE+ L +I+ ++P  RQT LF
Sbjct:   303 IIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLF 362

Query:   195 SATMTKKVKKLQRACLKN-P--VKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV 251
             SAT T+KV+ L R  LK  P  V ++     +TVD L+Q Y   P++ +   L   L + 
Sbjct:   363 SATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKN 422

Query:   252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311
                  MVF  +C + +    +L  +    + I G   Q+KR     +F   +  IL+CTD
Sbjct:   423 RKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTD 482

Query:   312 VASRGLDIPSVDMVINYDIPTNSKDYIH 339
             VA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   483 VAARGLDIPEVDWIVQYDPPDDPKEYIH 510


>UNIPROTKB|F1MSX0 [details] [associations]
            symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
            IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
        Length = 674

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 122/328 (37%), Positives = 189/328 (57%)

Query:    15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIA 74
             + +  ++A + +G+   ++IQ ++I   LEG+DL+  A+TGSGKT AF +P ++ ++++ 
Sbjct:   190 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLK 249

Query:    75 ENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPH 134
                R        +LSPTRELA+Q     + L +       +++GG +   +   L    +
Sbjct:   250 FMPRNGTGVL--ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGIN 307

Query:   135 IVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194
             IVVATPGRL+DH+ NT GF    L+ LV+DEADR+L+  FE+ L +I+ ++P  RQT LF
Sbjct:   308 IVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLF 367

Query:   195 SATMTKKVKKLQRACLKN-P--VKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV 251
             SAT T+KV+ L R  LK  P  V ++     +TVD L+Q Y   P++ +   L   L + 
Sbjct:   368 SATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKN 427

Query:   252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311
                  MVF  +C + +    +L  +    + I G   Q+KR     +F   +  IL+CTD
Sbjct:   428 RKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTD 487

Query:   312 VASRGLDIPSVDMVINYDIPTNSKDYIH 339
             VA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   488 VAARGLDIPEVDWIVQYDPPDDPKEYIH 515


>UNIPROTKB|F1N533 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
            Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
        Length = 670

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 122/328 (37%), Positives = 189/328 (57%)

Query:    15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIA 74
             + +  ++A + +G+   ++IQ ++I   LEG+DL+  A+TGSGKT AF +P ++ ++++ 
Sbjct:   186 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLK 245

Query:    75 ENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPH 134
                R        +LSPTRELA+Q     + L +       +++GG +   +   L    +
Sbjct:   246 FMPRNGTGVL--ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGIN 303

Query:   135 IVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194
             IVVATPGRL+DH+ NT GF    L+ LV+DEADR+L+  FE+ L +I+ ++P  RQT LF
Sbjct:   304 IVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLF 363

Query:   195 SATMTKKVKKLQRACLKN-P--VKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV 251
             SAT T+KV+ L R  LK  P  V ++     +TVD L+Q Y   P++ +   L   L + 
Sbjct:   364 SATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKN 423

Query:   252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311
                  MVF  +C + +    +L  +    + I G   Q+KR     +F   +  IL+CTD
Sbjct:   424 RKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTD 483

Query:   312 VASRGLDIPSVDMVINYDIPTNSKDYIH 339
             VA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   484 VAARGLDIPEVDWIVQYDPPDDPKEYIH 511


>UNIPROTKB|F1RY13 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
            Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
        Length = 671

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 124/340 (36%), Positives = 193/340 (56%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             E+    +  +L + +  + A + +G+   ++IQ ++I   LEG+DL+  A+TGSGKT AF
Sbjct:   176 EDTSFASLTDL-VNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 234

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
              +P ++ ++++    R        +LSPTRELA+Q     + L +       +++GG + 
Sbjct:   235 LIPAVELIVKLRFMPRNGTGVL--ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNR 292

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               +   L    +IVVATPGRL+DH+ NT GF    L+ LV+DEADR+L+  FE+ L +I+
Sbjct:   293 SAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII 352

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASKYSTVDTLKQQYRFVPAKY 239
              ++P  RQT LFSAT T+KV+ L R  LK  P  V ++     +TVD L+Q Y   P++ 
Sbjct:   353 KLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEK 412

Query:   240 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 299
             +   L   L +      MVF  +C + +    +L  +    + I G   Q+KR     +F
Sbjct:   413 RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQF 472

Query:   300 KAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
                +  IL+CTDVA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   473 CNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH 512


>UNIPROTKB|I3L7B7 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00680000100037 EMBL:CU406995
            Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
        Length = 696

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 124/340 (36%), Positives = 193/340 (56%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             E+    +  +L + +  + A + +G+   ++IQ ++I   LEG+DL+  A+TGSGKT AF
Sbjct:   201 EDTSFASLTDL-VNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 259

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
              +P ++ ++++    R        +LSPTRELA+Q     + L +       +++GG + 
Sbjct:   260 LIPAVELIVKLRFMPRNGTGVL--ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNR 317

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               +   L    +IVVATPGRL+DH+ NT GF    L+ LV+DEADR+L+  FE+ L +I+
Sbjct:   318 SAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII 377

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASKYSTVDTLKQQYRFVPAKY 239
              ++P  RQT LFSAT T+KV+ L R  LK  P  V ++     +TVD L+Q Y   P++ 
Sbjct:   378 KLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEK 437

Query:   240 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 299
             +   L   L +      MVF  +C + +    +L  +    + I G   Q+KR     +F
Sbjct:   438 RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQF 497

Query:   300 KAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
                +  IL+CTDVA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   498 CNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH 537


>UNIPROTKB|I3L840 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00680000100037 EMBL:CU406995
            Ensembl:ENSSSCT00000025310 Uniprot:I3L840
        Length = 667

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 124/340 (36%), Positives = 193/340 (56%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             E+    +  +L + +  + A + +G+   ++IQ ++I   LEG+DL+  A+TGSGKT AF
Sbjct:   172 EDTSFASLTDL-VNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 230

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
              +P ++ ++++    R        +LSPTRELA+Q     + L +       +++GG + 
Sbjct:   231 LIPAVELIVKLRFMPRNGTGVL--ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNR 288

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               +   L    +IVVATPGRL+DH+ NT GF    L+ LV+DEADR+L+  FE+ L +I+
Sbjct:   289 SAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII 348

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASKYSTVDTLKQQYRFVPAKY 239
              ++P  RQT LFSAT T+KV+ L R  LK  P  V ++     +TVD L+Q Y   P++ 
Sbjct:   349 KLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEK 408

Query:   240 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 299
             +   L   L +      MVF  +C + +    +L  +    + I G   Q+KR     +F
Sbjct:   409 RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQF 468

Query:   300 KAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
                +  IL+CTDVA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   469 CNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH 508


>UNIPROTKB|Q47Z59 [details] [associations]
            symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
            "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
            STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
            OMA:PKFIVAT ProtClustDB:CLSK869483
            BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
        Length = 448

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 129/369 (34%), Positives = 194/369 (52%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F + GL   L+   E++G+  P++IQ +AIP A+ G DLI  ++TGSGKT AF +P LQ 
Sbjct:     3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L +     +  P     +L+PTRELA Q+  Q     +    +  +++GG +   Q   L
Sbjct:    63 LSKNRALSKRDPR--VVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVL 120

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RM 188
              K P  +VATPGRL DHLT    F L  L+ L+LDEADR+L+  F K L +I      R 
Sbjct:   121 QKEPEFIVATPGRLADHLTQGH-FHLNGLELLILDEADRMLDLGFSKELTQINKAADHRK 179

Query:   189 RQTYLFSATMTK-KVKKLQRACLKNPVKIEAASKYST-VDTLKQQYRFVPAKYKDCYLVY 246
             RQT LFSAT+   +V +     L  P +I   + +S  VD  K+ Y       K+  L +
Sbjct:   180 RQTLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQH 239

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
              L    +   ++FT T   T  LA +L      A+ +SG ++Q +R   +  F  G+  I
Sbjct:   240 FLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKI 299

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TD+ASRGLD+ +V  VIN+D+P ++++++H              ISLV   +     
Sbjct:   300 LVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLK 359

Query:   367 QIEKLIGKK 375
              +E  + +K
Sbjct:   360 NVEAFLQQK 368


>TIGR_CMR|CPS_3215 [details] [associations]
            symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
            "RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
            STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
            OMA:PKFIVAT ProtClustDB:CLSK869483
            BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
        Length = 448

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 129/369 (34%), Positives = 194/369 (52%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F + GL   L+   E++G+  P++IQ +AIP A+ G DLI  ++TGSGKT AF +P LQ 
Sbjct:     3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L +     +  P     +L+PTRELA Q+  Q     +    +  +++GG +   Q   L
Sbjct:    63 LSKNRALSKRDPR--VVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVL 120

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RM 188
              K P  +VATPGRL DHLT    F L  L+ L+LDEADR+L+  F K L +I      R 
Sbjct:   121 QKEPEFIVATPGRLADHLTQGH-FHLNGLELLILDEADRMLDLGFSKELTQINKAADHRK 179

Query:   189 RQTYLFSATMTK-KVKKLQRACLKNPVKIEAASKYST-VDTLKQQYRFVPAKYKDCYLVY 246
             RQT LFSAT+   +V +     L  P +I   + +S  VD  K+ Y       K+  L +
Sbjct:   180 RQTLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQH 239

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
              L    +   ++FT T   T  LA +L      A+ +SG ++Q +R   +  F  G+  I
Sbjct:   240 FLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKI 299

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TD+ASRGLD+ +V  VIN+D+P ++++++H              ISLV   +     
Sbjct:   300 LVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLK 359

Query:   367 QIEKLIGKK 375
              +E  + +K
Sbjct:   360 NVEAFLQQK 368


>TIGR_CMR|CPS_3401 [details] [associations]
            symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
            STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
            OMA:HLIKEHQ ProtClustDB:CLSK907013
            BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
        Length = 432

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 134/367 (36%), Positives = 195/367 (53%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF ELGL   L+     + +  P+ IQA AIP    G+DLI  A TGSGKT  FALP+LQ
Sbjct:     9 TFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQ 68

Query:    69 ALLE-IAENQRTVPAFFAC--VLSPTRELAIQISEQFEALGSGIS--LRCAVLVGGVDMM 123
              L E I+   +     F    VL PTRELA Q+++  ++     +  ++   + GGV + 
Sbjct:    69 KLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVN 128

Query:   124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
              Q LAL     I+VATPGRL+D L ++    L  +K LVLDEADR+L+  F + L  +L 
Sbjct:   129 IQMLALRGGVDILVATPGRLLD-LISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLA 187

Query:   184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
             + P+ +QT LFSAT  ++V  L +  L NP++I+  S  +   TL Q+   V    K   
Sbjct:   188 LTPKKKQTLLFSATFPEQVTTLTQELLNNPIEIQLQS--ADASTLVQRVFTVNKGEKTAV 245

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303
             L +++ +      ++F         LA  L   G  A    G   QS+R   L+ FKAG+
Sbjct:   246 LAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGD 305

Query:   304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELE 363
               +LI TD+A+RGLDI  + +VIN+++P +  DY+H              ISL++  +  
Sbjct:   306 IEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHEDYH 365

Query:   364 WYLQIEK 370
              +  IEK
Sbjct:   366 HFSVIEK 372


>UNIPROTKB|Q8ECL2 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 125/366 (34%), Positives = 195/366 (53%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             V +F ELG+   L      +G+ +P+ +QA  IP  L G+D++  A TGSGKT AFALP+
Sbjct:     8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67

Query:    67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS--LRCAVLVGGVDMMQ 124
             LQ L E     ++       VL PTRELA Q+++ F +  S  +  L+     GGV +  
Sbjct:    68 LQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNL 127

Query:   125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
             Q  +L     ++VATPGRL+D L +     L  +   VLDEADR+L+  F + L+++L  
Sbjct:   128 QMQSLRAGADVLVATPGRLLDLLASN-ALKLTQVSAFVLDEADRMLSLGFTEELEQVLAA 186

Query:   185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244
             +PR +QT LFSAT  ++V+ L    L  P++    S+  +  T++Q+   V  + K   L
Sbjct:   187 LPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQES--TIEQRVITVNREQKTALL 244

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
              +++ +   S  ++F    +    LA  L   G  A    G  +Q  R   L+ FK GE 
Sbjct:   245 AHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEI 304

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEW 364
             ++LI TD+A+RG+DI  + +VIN+D+P +  DY+H              ++L++  E   
Sbjct:   305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHH 364

Query:   365 YLQIEK 370
             +  IEK
Sbjct:   365 FGVIEK 370


>TIGR_CMR|SO_3125 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 125/366 (34%), Positives = 195/366 (53%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             V +F ELG+   L      +G+ +P+ +QA  IP  L G+D++  A TGSGKT AFALP+
Sbjct:     8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67

Query:    67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS--LRCAVLVGGVDMMQ 124
             LQ L E     ++       VL PTRELA Q+++ F +  S  +  L+     GGV +  
Sbjct:    68 LQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNL 127

Query:   125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
             Q  +L     ++VATPGRL+D L +     L  +   VLDEADR+L+  F + L+++L  
Sbjct:   128 QMQSLRAGADVLVATPGRLLDLLASN-ALKLTQVSAFVLDEADRMLSLGFTEELEQVLAA 186

Query:   185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244
             +PR +QT LFSAT  ++V+ L    L  P++    S+  +  T++Q+   V  + K   L
Sbjct:   187 LPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQES--TIEQRVITVNREQKTALL 244

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
              +++ +   S  ++F    +    LA  L   G  A    G  +Q  R   L+ FK GE 
Sbjct:   245 AHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEI 304

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEW 364
             ++LI TD+A+RG+DI  + +VIN+D+P +  DY+H              ++L++  E   
Sbjct:   305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHH 364

Query:   365 YLQIEK 370
             +  IEK
Sbjct:   365 FGVIEK 370


>UNIPROTKB|Q9NVP1 [details] [associations]
            symbol:DDX18 "ATP-dependent RNA helicase DDX18"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
            EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
            RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
            ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
            MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
            SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
            Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
            CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
            MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
            InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
            ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
            GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
            CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
            Uniprot:Q9NVP1
        Length = 670

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 121/328 (36%), Positives = 189/328 (57%)

Query:    15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIA 74
             + +  ++A + +G+   ++IQ ++I   LEG+DL+  A+TGSGKT AF +P ++ ++++ 
Sbjct:   186 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR 245

Query:    75 ENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPH 134
                R        +LSPTRELA+Q     + L +       +++GG +   +   LG   +
Sbjct:   246 FMPRNGTGVL--ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGIN 303

Query:   135 IVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194
             I+VATPGRL+DH+ NT GF    L+ LV+DEADR+L+  FE+ L +I+ ++P  RQT LF
Sbjct:   304 IIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLF 363

Query:   195 SATMTKKVKKLQRACLKN-P--VKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV 251
             SAT T+KV+ L R  LK  P  V ++     +TVD L+Q Y   P++ +   L   L + 
Sbjct:   364 SATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKN 423

Query:   252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311
                  MVF  +C + +    +L  +    + I G   Q+KR     +F   +   L+CTD
Sbjct:   424 RKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTD 483

Query:   312 VASRGLDIPSVDMVINYDIPTNSKDYIH 339
             VA+RGLDIP VD ++ YD P + K+YIH
Sbjct:   484 VAARGLDIPEVDWIVQYDPPDDPKEYIH 511


>UNIPROTKB|Q8EE19 [details] [associations]
            symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
            GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
            ProtClustDB:CLSK906777 Uniprot:Q8EE19
        Length = 475

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 123/365 (33%), Positives = 193/365 (52%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F +LGL   LV+A   +G+++P+ IQ +AIP  L GK+++  AQTG+GKT +F LP+L  
Sbjct:     3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLH- 61

Query:    70 LLEIAENQRTVPAFF-ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
                 A+  +  P    + +L+PTRELA+Q+ +        + L    + GGVD   Q   
Sbjct:    62 --RFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKR 119

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L +   ++VATPGRL+D  T  +      +  LVLDEADR+L+  F + ++ I+  +P  
Sbjct:   120 LIEGVDLLVATPGRLLDMYTQ-RAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQ 178

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             RQ  LFSAT++K+VK L +  + + ++IE + K +    + Q    V    K   L +++
Sbjct:   179 RQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSHLI 238

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
              E + +  ++F +T      L   L   G  A       SQ+ R   L  FKAG+   L+
Sbjct:   239 KENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLV 298

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
              T V SRG+DI +++ VINYD+P  + DYIH              IS V++ +      I
Sbjct:   299 ATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAI 358

Query:   369 EKLIG 373
             E+ +G
Sbjct:   359 ERRLG 363


>TIGR_CMR|SO_2571 [details] [associations]
            symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
            GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
            ProtClustDB:CLSK906777 Uniprot:Q8EE19
        Length = 475

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 123/365 (33%), Positives = 193/365 (52%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F +LGL   LV+A   +G+++P+ IQ +AIP  L GK+++  AQTG+GKT +F LP+L  
Sbjct:     3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLH- 61

Query:    70 LLEIAENQRTVPAFF-ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
                 A+  +  P    + +L+PTRELA+Q+ +        + L    + GGVD   Q   
Sbjct:    62 --RFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKR 119

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L +   ++VATPGRL+D  T  +      +  LVLDEADR+L+  F + ++ I+  +P  
Sbjct:   120 LIEGVDLLVATPGRLLDMYTQ-RAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQ 178

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             RQ  LFSAT++K+VK L +  + + ++IE + K +    + Q    V    K   L +++
Sbjct:   179 RQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSHLI 238

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
              E + +  ++F +T      L   L   G  A       SQ+ R   L  FKAG+   L+
Sbjct:   239 KENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLV 298

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
              T V SRG+DI +++ VINYD+P  + DYIH              IS V++ +      I
Sbjct:   299 ATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAI 358

Query:   369 EKLIG 373
             E+ +G
Sbjct:   359 ERRLG 363


>WB|WBGene00021277 [details] [associations]
            symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0040010 "positive
            regulation of growth rate" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
            GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
            HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
            ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
            EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
            UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
            NextBio:872791 Uniprot:Q9N478
        Length = 732

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 123/334 (36%), Positives = 179/334 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L    +E  ++  +  P++IQ + I ++L G D++G A+TGSGKT A  +P+L+A
Sbjct:    78 FEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEA 137

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L     +        A ++SPTRELA+Q      A+G+     C +++GG D+  +   +
Sbjct:   138 LWRAKWSPDY--GLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRI 195

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
                 +I+V TPGRL+ H+      S  +L+ LVLDEADR+L+  F K L+ I+N +P  R
Sbjct:   196 SGI-NIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAER 254

Query:   190 QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS--TVDTLKQQYRFVPAKYKDCYLVYI 247
             QT LFSAT T+ VK L R C  +PV +      S  T D LKQ Y  V  ++K   L   
Sbjct:   255 QTLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSF 314

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECN 305
             +       ++VF  +C   R L      L  G   + + G M+Q KR+    KF   +  
Sbjct:   315 IEAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAA 374

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +LI TDVASRGLD   +D VI  D P    DYIH
Sbjct:   375 VLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIH 408


>ASPGD|ASPL0000061778 [details] [associations]
            symbol:AN0589 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
            InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
            ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
            EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
            HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
        Length = 812

 Score = 529 (191.3 bits), Expect = 1.8e-50, P = 1.8e-50
 Identities = 128/338 (37%), Positives = 191/338 (56%)

Query:     8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL 67
             ++F +L + +  +    +  +KT + IQ+ AI HAL+G+D++G A+TGSGKT AF +PIL
Sbjct:    48 ESFSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPIL 107

Query:    68 QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
             + L     +        A ++SPTRELAIQI E    +G   +    +++GG  + ++  
Sbjct:   108 ENLYRKQWSDHD--GLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQE 165

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
              LG R +I+V TPGR++ HL  T  F    L+ LVLDEADR+++  F+K++D I+  +P 
Sbjct:   166 RLG-RMNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPP 224

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYK-DCYL 244
              RQT LFSAT TKKV  L R  L++P  V +  A+  +T   L+Q Y   P   K D   
Sbjct:   225 ERQTLLFSATQTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVTPLPQKLDTLW 284

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI---SGHMSQSKRLGALNKFKA 301
              +I + +  S T+VF  +    R +    R++ Q  IP+    G   Q  RL    +F  
Sbjct:   285 SFIRSNLK-SKTIVFMSSGKQVRFVYESFRHM-QPGIPLLHLHGRQKQGGRLDITTRFSQ 342

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              +  +L  TDVA+RGLD P+VD VI  D P ++  YIH
Sbjct:   343 AQHAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIH 380


>TAIR|locus:2222617 [details] [associations]
            symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
            "plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
            wall modification" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
            PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
            Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
            ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
            EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
            OMA:YLIPGFM Uniprot:F4K6V1
        Length = 712

 Score = 503 (182.1 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
 Identities = 123/322 (38%), Positives = 180/322 (55%)

Query:    25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84
             + G+  PS IQA++ P A++ +D++ +A+TGSGKT  + +P    L  I  + R  P   
Sbjct:   246 SAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTIL 305

Query:    85 ACVLSPTRELAIQISEQFEAL--GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGR 142
               VLSPTRELA QI  Q EAL  G    + CA L GG     Q   + +   IVVATPGR
Sbjct:   306 --VLSPTRELATQI--QVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 361

Query:   143 LMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKV 202
             L D L   K  SL  + YLVLDEADR+L+  FE  + +I+N +P  RQT +++AT  K+V
Sbjct:   362 LNDIL-EMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEV 420

Query:   203 KKLQRACLKNPVKIEAASKYSTV--DTLKQQYRFVPAKYKDCYLVYIL-TEVSASSTMVF 259
             +K+    L NP ++   +    V   ++ Q    +    K   L  IL ++   S  ++F
Sbjct:   421 RKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIF 480

Query:   260 TRTCDATRLLALMLRNLGQR--AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGL 317
                C   R+   + RNL +   A  I G  SQ++R   LN+F++G   +L+ TDVA+RGL
Sbjct:   481 ---CSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGL 537

Query:   318 DIPSVDMVINYDIPTNSKDYIH 339
             D+  + +V+NYD P   +DY+H
Sbjct:   538 DVKDIRVVVNYDFPNGVEDYVH 559

 Score = 38 (18.4 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query:     9 TFKELGLRDELVEACEN 25
             +F+  GL +EL+  C N
Sbjct:   162 SFEATGLPNELLRECPN 178


>MGI|MGI:1919240 [details] [associations]
            symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003714 "transcription corepressor activity" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005102 "receptor binding"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
            GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
            GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
            EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
            UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
            PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
            Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
            UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
            Genevestigator:Q8K4L0 Uniprot:Q8K4L0
        Length = 874

 Score = 530 (191.6 bits), Expect = 2.4e-50, P = 2.4e-50
 Identities = 133/376 (35%), Positives = 199/376 (52%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             ++K+   F+ +GL   + +     G+K P+ IQ + IP  L+GKD++ +A+TGSGKT  F
Sbjct:    90 KKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACF 149

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
              LP+ + L   A + +T     A +LSPTRELA+Q  +  + LG    L+ A+++GG  M
Sbjct:   150 LLPMFERLK--ARSAQTGAR--ALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKM 205

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               Q  AL + P I++ATPGRL+ H+       L +++Y+V DEADRL    F + L EI+
Sbjct:   206 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 264

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPV--KIEAASKYSTVDTLKQQYRFVPAKYK 240
               +P   QT LFSAT+ K + +  RA L  PV  +++  SK +  + LK  +  V    K
Sbjct:   265 GRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLN--EQLKTSFLLVREDTK 322

Query:   241 DCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
                L+Y+L  V      T+VF  T      L  +L   G     I   + Q+ R   L K
Sbjct:   323 AAVLLYLLQNVVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAK 382

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVN 358
             F   +C+ LI TD+A+RGLDIP +D VINY  P   K ++H               SLV 
Sbjct:   383 FTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVA 442

Query:   359 QYELEWYLQIEKLIGK 374
               E+ + L +   +G+
Sbjct:   443 PDEVPYLLDLHLFLGR 458


>UNIPROTKB|Q81QF0 [details] [associations]
            symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:1392 "Bacillus anthracis" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
            RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
            DNASU:1085525 EnsemblBacteria:EBBACT00000011128
            EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
            GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
            KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
            ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
            BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
        Length = 450

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 131/368 (35%), Positives = 193/368 (52%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +K F ELG+ +         G    + IQ +AIP  L GKD+IG A+TG+GKT AF LPI
Sbjct:     4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 63

Query:    67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGISLRCAVLVGGVDMMQQ 125
             L+   +I      V A    +++PTRELA+QI+ + +  L     +    + GG D+ QQ
Sbjct:    64 LE---KIDPESSDVQAL---IVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ 117

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                L    HIVVATPGRL+DH+   +   L  L  +VLDEAD++L   F   +++IL+  
Sbjct:   118 LRKLKGNTHIVVATPGRLLDHIRR-ETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET 176

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV 245
             P  +QT LFSAT+ K +KKL +  +  P  I+  S+  TVDT++Q+      + K   L 
Sbjct:   177 PGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALR 236

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
             +++        ++F RT      L   L+ LG     + G + Q+KR   +  F+  +  
Sbjct:   237 FVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQ 296

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
              LI TDVA+RGLD+  V  V NYDIP + + YIH              I+ V   + +  
Sbjct:   297 YLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHL 356

Query:   366 LQIEKLIG 373
              +IEK +G
Sbjct:   357 EEIEKTLG 364


>TIGR_CMR|BA_2475 [details] [associations]
            symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
            RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
            DNASU:1085525 EnsemblBacteria:EBBACT00000011128
            EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
            GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
            KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
            ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
            BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
        Length = 450

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 131/368 (35%), Positives = 193/368 (52%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +K F ELG+ +         G    + IQ +AIP  L GKD+IG A+TG+GKT AF LPI
Sbjct:     4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 63

Query:    67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGISLRCAVLVGGVDMMQQ 125
             L+   +I      V A    +++PTRELA+QI+ + +  L     +    + GG D+ QQ
Sbjct:    64 LE---KIDPESSDVQAL---IVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ 117

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                L    HIVVATPGRL+DH+   +   L  L  +VLDEAD++L   F   +++IL+  
Sbjct:   118 LRKLKGNTHIVVATPGRLLDHIRR-ETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET 176

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV 245
             P  +QT LFSAT+ K +KKL +  +  P  I+  S+  TVDT++Q+      + K   L 
Sbjct:   177 PGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALR 236

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
             +++        ++F RT      L   L+ LG     + G + Q+KR   +  F+  +  
Sbjct:   237 FVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQ 296

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
              LI TDVA+RGLD+  V  V NYDIP + + YIH              I+ V   + +  
Sbjct:   297 YLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHL 356

Query:   366 LQIEKLIG 373
              +IEK +G
Sbjct:   357 EEIEKTLG 364


>TIGR_CMR|CPS_1590 [details] [associations]
            symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
            STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
            OMA:AISECGY ProtClustDB:CLSK768209
            BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
        Length = 455

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 130/379 (34%), Positives = 205/379 (54%)

Query:    13 LGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLE 72
             +GL  +L++A +  G+K  + IQ EAIP   +G DL+  AQTG+GKT AF+LPIL A+ +
Sbjct:     6 IGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAK 65

Query:    73 I---AENQRTVP-------------AFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 116
                 A++  T               A  A +L+PTRELA Q+++  +     + ++  V+
Sbjct:    66 ANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVV 125

Query:   117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176
              GG  M  QT  L +   ++VATPGRL++HL   +   L  +K+LVLDEADR+L+  F  
Sbjct:   126 YGGGKMASQTKMLKQGLDVLVATPGRLLEHLA-LRNVDLSQVKFLVLDEADRMLDMGFLT 184

Query:   177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP 236
              ++++L  +    QT +FSAT + +VK L    LK+P  I  + + +T   +KQ   +V 
Sbjct:   185 DIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVT 244

Query:   237 AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGAL 296
              + K   L  ++   +    +VF  T ++   LA  L+  G +A    G  +Q  R  AL
Sbjct:   245 EERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKAL 304

Query:   297 NKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISL 356
              +F  G+  +L+ TDVA+RGLDIP +  V+N+ +P   +DY+H              ISL
Sbjct:   305 EQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISL 364

Query:   357 VNQYELEWYLQIEKLIGKK 375
             V+  +  +   IE+LI +K
Sbjct:   365 VSPKDERFLENIEQLIERK 383


>POMBASE|SPAC1093.05 [details] [associations]
            symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
            EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
            ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
            EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
            NextBio:20802723 Uniprot:Q9UTP9
        Length = 735

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 128/343 (37%), Positives = 184/343 (53%)

Query:     2 AEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61
             A  + V  F EL L      A +N  + T ++IQ + IP AL+G+D++G A+TGSGKT A
Sbjct:    33 ALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLA 92

Query:    62 FALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 121
             F +P+++ L    +   ++    A V+SPTRELAIQ  E    +G   S    +++GG +
Sbjct:    93 FIVPLIENLYR--KKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNN 150

Query:   122 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEI 181
               ++   L  R +I+V TPGRL+ H+     F    L+ L+LDEADR+L+  F  +LD I
Sbjct:   151 YKEEKERLS-RMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAI 209

Query:   182 LNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKY 239
             ++ +P  RQT LFSAT TK VK L R  L+NP  + +      ST   L Q Y  VP   
Sbjct:   210 VSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTE 269

Query:   240 K-DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGAL 296
             K D    +I T +    T+VF  +C   R +    R +  G   + + G   Q+ R    
Sbjct:   270 KLDILFGFIRTHLKFK-TIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVT 328

Query:   297 NKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              KF +    +L CTD+ +RGLD P+VD VI  D P +   YIH
Sbjct:   329 AKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIH 371


>UNIPROTKB|F1N0P2 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00670000098028 EMBL:DAAA02019036 IPI:IPI00709252
            UniGene:Bt.61505 Ensembl:ENSBTAT00000056136 OMA:PLEPKEY
            Uniprot:F1N0P2
        Length = 392

 Score = 283 (104.7 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
 Identities = 65/163 (39%), Positives = 88/163 (53%)

Query:   217 EAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS----STMVFTRTCDATRLLALM 272
             EA +   TV+ L Q+Y  VP K KD YLV+++          S ++FT TC   ++L +M
Sbjct:   117 EAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMM 176

Query:   273 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 332
             LR      + +   M Q +R  AL KFK+    ILI TDVASRGLDIP+V +VIN++ P 
Sbjct:   177 LRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPG 236

Query:   333 NSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLIGKK 375
               K YIH              I+LV QY++     IE+ I KK
Sbjct:   237 LPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKK 279

 Score = 255 (94.8 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
 Identities = 56/111 (50%), Positives = 72/111 (64%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F ELGL   LVE C  +G K P+ +Q   IP  LEG+D +G A+TGSGKT AF LPILQ 
Sbjct:     4 FAELGLSSWLVEQCRQMGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 120
             L   +E+   +   F  VL+PTRELA QI+EQF  LG  + L+  ++VGG+
Sbjct:    64 L---SEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGL 108


>UNIPROTKB|F1NTK9 [details] [associations]
            symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003714 "transcription corepressor
            activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
            receptor binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
            EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
            Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
        Length = 822

 Score = 525 (189.9 bits), Expect = 5.7e-50, P = 5.7e-50
 Identities = 133/379 (35%), Positives = 201/379 (53%)

Query:     2 AEEKEVKT--FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKT 59
             A+ K+ K+  F+ +GL   + +     G+K P+ IQ + IP  L G+D++ +A+TGSGKT
Sbjct:    28 AQNKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKT 87

Query:    60 GAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
               F LP+ + L   + +        A +LSPTRELA+Q  +  + LG    L+ A+++GG
Sbjct:    88 ACFLLPMFERLKAPSPSGAR-----ALILSPTRELALQTLKFTKELGKFTGLKTALVLGG 142

Query:   120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
               M  Q  AL + P I++ATPGRL+ H+       L +++Y+V DEADRL    F + L 
Sbjct:   143 DKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQ 201

Query:   180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPA 237
             EIL  +P   QT LFSAT+ K + +  RA L  P  ++++  SK S  + LK  +  V  
Sbjct:   202 EILARLPGSHQTVLFSATLPKLLVEFARAGLTEPMLIRLDVESKLS--EQLKLAFFHVRG 259

Query:   238 KYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
               K   L+++L  V      T+VF  T   T  L  +L + G     I   + Q+ R   
Sbjct:   260 DDKPAVLLHLLRCVVKPQDQTVVFVATKHHTEYLKELLTSQGICCTHIYSSLDQTARKIN 319

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXIS 355
             + KF  G+C +L+ TDVA+RGLDIP +D VINY  P  SK ++H               S
Sbjct:   320 IAKFAHGKCQVLLVTDVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYS 379

Query:   356 LVNQYELEWYLQIEKLIGK 374
             LV   E+ +   +   +G+
Sbjct:   380 LVAPDEMPYIFDLHLFLGR 398


>UNIPROTKB|F1NEQ3 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
            IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
        Length = 659

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 125/341 (36%), Positives = 194/341 (56%)

Query:     6 EVKTFKEL-GLRDE-LVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFA 63
             E  +F  L GL  E  ++   ++G+   ++IQ ++I   LEG+D++  A+TGSGKT AF 
Sbjct:   162 EDNSFTSLAGLVSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFL 221

Query:    64 LPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123
             +P ++ + ++    R        +LSPTRELA+Q     + L +       +++GG +  
Sbjct:   222 IPAVELIYKLKFMPRNGTGVI--ILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNRS 279

Query:   124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
              +   LG   +I+VATPGRL+DH+ NT GF    L+ LV+DEADR+L   FE+ + +I+ 
Sbjct:   280 AEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIK 339

Query:   184 VIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASKYSTVDTLKQQYRFVPAKYK 240
             ++P+ RQT LFSAT T+KV+ L +  LK  P  V ++   + +TVD L+Q Y   P++ +
Sbjct:   340 LLPKRRQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKETATVDGLEQGYVVCPSEKR 399

Query:   241 DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK 300
                L   L +      MVF  +C + +    +L  +    + I G   Q+KR     +F 
Sbjct:   400 FLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFC 459

Query:   301 AGECNILICTDVASRGLDIPSVDMVINYDIPTN--SKDYIH 339
               E  IL+CTDVA+RGLDIP VD ++ YD P +   K+YIH
Sbjct:   460 NAESGILLCTDVAARGLDIPEVDWIVQYDPPDDPKQKEYIH 500


>POMBASE|SPBC17D1.06 [details] [associations]
            symbol:dbp3 "ATP-dependent RNA helicase Dbp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
            "ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
            processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
            GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
            PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
            STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
            GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
            Uniprot:Q10202
        Length = 578

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 132/343 (38%), Positives = 192/343 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F EL +  +L E  +N  +K P+ IQA   P+ L G+D++G+A+TGSGKT AF +P LQ 
Sbjct:   169 FDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L  +++N ++VP     V+SPTRELAIQ  E   +L  G +L+  V+ GG    +Q  A 
Sbjct:   227 LNGLSDN-KSVPRVL--VVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARA- 282

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR-- 187
              K   +++ TPGRL+D L N        + YLVLDEADR+L+  FE+ +  I++  P   
Sbjct:   283 AKNASVIIGTPGRLLD-LINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPT 341

Query:   188 ---MRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS-KYSTVDTLKQQYRFVP-AKYKDC 242
                 RQT  FSAT  + V+ L    LK+PVKI   S + +    + Q    +   + K+ 
Sbjct:   342 RNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKER 401

Query:   243 YLVYILTEVSASS-----TMVFTR-TCDATRLLALMLRNLGQRAIPISGHMSQSKRLGAL 296
              L  +L +  +S       ++F     +A R+   + R      + I G MSQ  RL AL
Sbjct:   402 MLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARKYN--VVGIHGDMSQGARLQAL 459

Query:   297 NKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             N FK+G+C +L+ TDVA+RGLDIP V +VIN   P   +DY+H
Sbjct:   460 NDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVH 502


>RGD|1562539 [details] [associations]
            symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
            species:10116 "Rattus norvegicus" [GO:0003714 "transcription
            corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
            "RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
            evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
            GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000075100 IPI:IPI00193685
            Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
            Uniprot:D3ZHY6
        Length = 906

 Score = 525 (189.9 bits), Expect = 1.0e-49, P = 1.0e-49
 Identities = 132/376 (35%), Positives = 198/376 (52%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             ++K+   F+ +GL   + +     G+K P+ IQ + IP  L+GKD++ +A+TGSGKT  F
Sbjct:    90 KKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACF 149

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
              LP+ + L   A + +T     A +LSPTRELA+Q  +  + LG    L+ A+++GG  M
Sbjct:   150 LLPMFERLK--ARSAQTGAR--ALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKM 205

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               Q  AL + P I++ATPGRL+ H+       L +++Y+V DEADRL    F + L EI+
Sbjct:   206 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 264

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPV--KIEAASKYSTVDTLKQQYRFVPAKYK 240
               +P   QT LFSAT+ K + +  RA L  PV  +++  SK +  + LK  +  V    K
Sbjct:   265 GRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLN--EQLKTSFFLVREDTK 322

Query:   241 DCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
                L+Y+L  V       +VF  T      L  +L   G     I   + Q+ R   L K
Sbjct:   323 TAVLLYLLQNVVRPQDQNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQTARKINLAK 382

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVN 358
             F   +C+ LI TD+A+RGLDIP +D VINY  P   K ++H               SLV 
Sbjct:   383 FTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVA 442

Query:   359 QYELEWYLQIEKLIGK 374
               E+ + L +   +G+
Sbjct:   443 PDEVPYLLDLHLFLGR 458


>TAIR|locus:2162022 [details] [associations]
            symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
            EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
            IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
            UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
            PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
            KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
            OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
            Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
        Length = 591

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 127/339 (37%), Positives = 190/339 (56%)

Query:     5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             K +K F++    D ++EA   +G+  P+ IQA+  P AL+G+DLIG+A+TGSGKT A+ L
Sbjct:   162 KPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLL 221

Query:    65 PILQALLEIAENQRTVP--AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
             P   AL+ ++   R          +L+PTRELA+QI E+    G    +R   + GG   
Sbjct:   222 P---ALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               Q   L +   IV+ATPGRL+D L   +  +L  + YLVLDEADR+L+  FE  + +I+
Sbjct:   279 GPQIRDLRRGVEIVIATPGRLIDML-ECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIV 337

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVK-IEAASKYSTVDTLKQQYRFVPAKYKD 241
             + I   RQT L+SAT  ++V+ L R  L++P K I  ++      ++ Q    VP   K 
Sbjct:   338 SQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKY 397

Query:   242 CYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK 300
               L+ +L ++   S  ++F  T      +   LR  G  A+ I G  +QS+R   L +FK
Sbjct:   398 NRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFK 457

Query:   301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +G   I+  TDVA+RGLD+  +  V+NYD P   +DYIH
Sbjct:   458 SGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIH 496


>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
            symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
            cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
            evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
            HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
            RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
            STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
            InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
            Uniprot:Q6DRL1
        Length = 653

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 120/340 (35%), Positives = 193/340 (56%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             E++   +  E+ + +  ++  + +G+ T ++IQ + I   LEG+D++  A+TGSGKT AF
Sbjct:   157 EDRSFASLSEV-VSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAF 215

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
              +P ++ + ++    R        VLSPTRELA+Q     + L +       +++GG + 
Sbjct:   216 LIPSIELIYKLKFMPRNGTGVI--VLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNR 273

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               +   L    +I+VATPGRL+DHL NT GF    L+ L++DEADR+L   FE+ L +I+
Sbjct:   274 SAEAQKLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQII 333

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKN-P--VKIEAASKYSTVDTLKQQYRFVPAKY 239
              ++P+ RQ+ LFSAT T+KV+ L R  LK  P  V ++     +TV+ L+Q Y   P++ 
Sbjct:   334 KLLPKKRQSMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEK 393

Query:   240 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 299
             +   L   L +      MVF  +C + +    +L  +    + I G   Q+KR     +F
Sbjct:   394 RFLLLFTFLKKNRKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQF 453

Query:   300 KAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
                +  IL+CTDVA+RGLDIP VD ++ +D P + K+YIH
Sbjct:   454 CNADSGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIH 493


>UNIPROTKB|E1BGI6 [details] [associations]
            symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] [GO:0003714 "transcription corepressor activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
            GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
            IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
        Length = 877

 Score = 523 (189.2 bits), Expect = 1.4e-49, P = 1.4e-49
 Identities = 130/376 (34%), Positives = 200/376 (53%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             ++K+   F+ +GL   + +     G+K P+ IQ + IP  L+GKD++ +A+TGSGKT  F
Sbjct:    91 KKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACF 150

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
              +P+ + L     + +T     A +LSPTRELA+Q  +  + LG    L+ A+++GG  M
Sbjct:   151 LIPMFERLK--THSAQTGAR--ALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKM 206

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               Q  AL + P I++ATPGRL+ H+       L +++Y+V DEADRL    F + L EI+
Sbjct:   207 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 265

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPV--KIEAASKYSTVDTLKQQYRFVPAKYK 240
               +P   QT LFSAT+ K + +  RA L  PV  +++  SK +  + LK  +  V    K
Sbjct:   266 GRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLN--EQLKTSFFLVREDAK 323

Query:   241 DCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
                L+++L  V      T+VF  T      L+ +L   G     I   + Q+ R   L +
Sbjct:   324 AAVLLHLLRNVVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLAR 383

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVN 358
             F  G+C+ LI TD+A+RGLDIP +D VINY  P   K ++H               SLV 
Sbjct:   384 FTHGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVA 443

Query:   359 QYELEWYLQIEKLIGK 374
               E+ + L +   +G+
Sbjct:   444 PDEVPYLLDLHLFLGR 459


>UNIPROTKB|E9PIF2 [details] [associations]
            symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
            EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
            ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
            UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
        Length = 835

 Score = 521 (188.5 bits), Expect = 1.7e-49, P = 1.7e-49
 Identities = 117/338 (34%), Positives = 183/338 (54%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             E+  F +  L  + ++  +   ++  ++IQ + I  AL+GKD++G A+TGSGKT AF +P
Sbjct:    67 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVP 126

Query:    66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
             +L+AL  +     +       ++SPTRELA Q  E    +G        +++GG D+  +
Sbjct:   127 VLEALYRL--QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                +    +I+V TPGRL+ H+  T  F    L+ LVLDEADR+L+  F  +++ ++  +
Sbjct:   185 AERINNI-NILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL 243

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
             P+ RQT LFSAT TK VK L R  LKNP  V +   +KYST  TL+Q Y     + K   
Sbjct:   244 PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISV 303

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKA 301
             L   L       ++VF  +C   + L  +   L  G   + + G   Q +R+   N+F  
Sbjct:   304 LYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVR 363

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
                 +L  TD+A+RGLD P+V+ V+ +D P ++  YIH
Sbjct:   364 KRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 401


>TAIR|locus:2084178 [details] [associations]
            symbol:DRH1 "DEAD box RNA helicase 1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
            PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
            SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
            EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
            EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
            PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
            RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
            ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
            PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
            EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
            KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
            OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
            Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
        Length = 619

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 124/336 (36%), Positives = 182/336 (54%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F+  G   EL+    + G+  P+ IQA++ P A++G+D++ +A+TGSGKT  + +P   
Sbjct:   159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L  I  + R  P     VLSPTRELA QI E+    G    + C  L GG     Q   
Sbjct:   219 HLQRIRNDSRMGPTIL--VLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRD 276

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L +   IVVATPGRL D L   +  SL  + YLVLDEADR+L+  FE  + +I+  IP  
Sbjct:   277 LERGADIVVATPGRLNDIL-EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTK 335

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTV--DTLKQQYRFVPAKYKDCYLVY 246
             RQT +++AT  K V+K+    L NP ++   +    V   ++ Q    V    K   L  
Sbjct:   336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQ 395

Query:   247 IL-TEVSASSTMVFTRTCDATRLLALMLRNLGQR--AIPISGHMSQSKRLGALNKFKAGE 303
             IL ++   S  ++F   C   R+   + RNL ++  A  I G  SQ +R   LN+F++G 
Sbjct:   396 ILRSQEPGSKVIIF---CSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGR 452

Query:   304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
               +L+ TDVA+RGLD+  +  V+NYD P   +DY+H
Sbjct:   453 TPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488


>UNIPROTKB|Q13206 [details] [associations]
            symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
            EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
            EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
            PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
            IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
            SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
            Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
            GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
            neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
            ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
            ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
            Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
        Length = 875

 Score = 521 (188.5 bits), Expect = 2.3e-49, P = 2.3e-49
 Identities = 117/338 (34%), Positives = 183/338 (54%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             E+  F +  L  + ++  +   ++  ++IQ + I  AL+GKD++G A+TGSGKT AF +P
Sbjct:    67 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVP 126

Query:    66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
             +L+AL  +     +       ++SPTRELA Q  E    +G        +++GG D+  +
Sbjct:   127 VLEALYRL--QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                +    +I+V TPGRL+ H+  T  F    L+ LVLDEADR+L+  F  +++ ++  +
Sbjct:   185 AERINNI-NILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL 243

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
             P+ RQT LFSAT TK VK L R  LKNP  V +   +KYST  TL+Q Y     + K   
Sbjct:   244 PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISV 303

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKA 301
             L   L       ++VF  +C   + L  +   L  G   + + G   Q +R+   N+F  
Sbjct:   304 LYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVR 363

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
                 +L  TD+A+RGLD P+V+ V+ +D P ++  YIH
Sbjct:   364 KRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 401


>UNIPROTKB|Q9KNA4 [details] [associations]
            symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
            GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
            PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
            DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
            Uniprot:Q9KNA4
        Length = 452

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 128/367 (34%), Positives = 197/367 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             FK+LGL + L++   +  +K  ++IQ +AIP  + G+DL+  ++TGSGKT AF LP+L  
Sbjct:     7 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
              L+        P     +L PTRELA Q+  +  ++  G+S    ++ GG +   Q  AL
Sbjct:    67 SLKTKAFSAKDPR--GLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RM 188
              + P  +VATPGRL DHL +   F  G L+ LVLDEADR+L+  F K L  I N    R 
Sbjct:   125 ARGPRFIVATPGRLADHLDHRSLFLEG-LETLVLDEADRMLDLGFAKELRRIHNAAKHRR 183

Query:   189 RQTYLFSATMTKK-VKKLQRACLKNPVKIE-AASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
             RQT +FSAT+    V  +    L  P +I          D  +  Y      +K+  L  
Sbjct:   184 RQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDR 243

Query:   247 ILTEVSASSTMVFTRT-CDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
             IL +      ++FT T  D  RL   + +N   +A+ +SG+++Q++R   + +F+     
Sbjct:   244 ILADAEYRQVIIFTATRADTDRLTEKLNQN-NLKAVALSGNLNQTQRNTIMGQFERAVFK 302

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
             IL+ TDVASRGLDIP+V  VIN+D+P ++++Y+H              +SLV   + E +
Sbjct:   303 ILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESF 362

Query:   366 LQIEKLI 372
              ++E  +
Sbjct:   363 KRVEAFL 369


>TIGR_CMR|VC_A0061 [details] [associations]
            symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
            ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
            ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
            KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
        Length = 452

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 128/367 (34%), Positives = 197/367 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             FK+LGL + L++   +  +K  ++IQ +AIP  + G+DL+  ++TGSGKT AF LP+L  
Sbjct:     7 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
              L+        P     +L PTRELA Q+  +  ++  G+S    ++ GG +   Q  AL
Sbjct:    67 SLKTKAFSAKDPR--GLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RM 188
              + P  +VATPGRL DHL +   F  G L+ LVLDEADR+L+  F K L  I N    R 
Sbjct:   125 ARGPRFIVATPGRLADHLDHRSLFLEG-LETLVLDEADRMLDLGFAKELRRIHNAAKHRR 183

Query:   189 RQTYLFSATMTKK-VKKLQRACLKNPVKIE-AASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
             RQT +FSAT+    V  +    L  P +I          D  +  Y      +K+  L  
Sbjct:   184 RQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDR 243

Query:   247 ILTEVSASSTMVFTRT-CDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
             IL +      ++FT T  D  RL   + +N   +A+ +SG+++Q++R   + +F+     
Sbjct:   244 ILADAEYRQVIIFTATRADTDRLTEKLNQN-NLKAVALSGNLNQTQRNTIMGQFERAVFK 302

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
             IL+ TDVASRGLDIP+V  VIN+D+P ++++Y+H              +SLV   + E +
Sbjct:   303 ILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESF 362

Query:   366 LQIEKLI 372
              ++E  +
Sbjct:   363 KRVEAFL 369


>TAIR|locus:2035741 [details] [associations]
            symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
            IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
            UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
            PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
            KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
            OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
            Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
        Length = 501

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 126/341 (36%), Positives = 197/341 (57%)

Query:     5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             K VK+F+++G  D ++E  +  G+  P+ IQ++  P A++G+DLIG+A+TGSGKT ++ L
Sbjct:    96 KPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLL 155

Query:    65 PILQALLEIAENQRTVPAF----FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 120
             P   A++ +  N + + A        VL+PTRELA+QI ++    GS   ++   + GGV
Sbjct:   156 P---AIVHV--NAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGV 210

Query:   121 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDE 180
                 Q   L K   IV+ATPGRL+D +  +   +L  + YLVLDEADR+L+  F+  + +
Sbjct:   211 PKGPQVRDLQKGVEIVIATPGRLID-MMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRK 269

Query:   181 ILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVK-IEAASKYSTVDTLKQQYRFVPAKY 239
             I++ I   RQT  +SAT  K+V++L +  L NP K I  +S       ++Q    +    
Sbjct:   270 IVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQ 329

Query:   240 KDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
             K   LV +L ++   S  +VF  T      +   LR  G  A+ I G  SQ++R   L++
Sbjct:   330 KYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSE 389

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             F++G+  I+  TDVA+RGLD+  V  VINYD P + +DY+H
Sbjct:   390 FRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 430


>TAIR|locus:2098886 [details] [associations]
            symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
            process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
            EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
            PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
            UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
            PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
            EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
            GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
            PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
            GermOnline:AT3G61240 Uniprot:Q9M2E0
        Length = 498

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 122/366 (33%), Positives = 202/366 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ +L++     G++ PS IQ E+IP AL G D++  A+ G+GKTGAF +P+L+ 
Sbjct:   126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE- 184

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
               +I  N   + A    +L PTRELA+Q S+  + L   ++++  V  GG  +    + L
Sbjct:   185 --KIDPNNNVIQAM---ILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRL 239

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
              +  H++V TPGR++D LT  KG   L     LV+DEAD+LL+ +F+ SL+E++  +P+ 
Sbjct:   240 HQPVHLLVGTPGRILD-LTK-KGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQN 297

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             RQ  +FSAT    VK  +   L+ P  I    +  T+  + Q Y FV  + K   L  + 
Sbjct:   298 RQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQL-TLMGVTQYYAFVEERQKVHCLNTLF 356

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
             +++  + +++F  + +   LLA  +  LG     I   M Q  R    ++F+ G C  L+
Sbjct:   357 SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLV 416

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL-Q 367
             CTD+ +RG+DI +V++VIN+D P  S+ Y+H              ++LV  YE  + + Q
Sbjct:   417 CTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVT-YEDRFKMYQ 475

Query:   368 IEKLIG 373
              E+ +G
Sbjct:   476 TEQELG 481


>TAIR|locus:2127043 [details] [associations]
            symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
            "virus-host interaction" evidence=IPI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
            GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
            GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
            ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
            IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
            RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
            UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
            PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
            EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
            GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
            Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
        Length = 505

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 120/366 (32%), Positives = 202/366 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ EL+      G++ PS IQ E+IP AL G+D++  A+ G+GKT AF +P+L+ 
Sbjct:   133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE- 191

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
               +I ++   + A    ++ PTRELA+Q S+  + LG  + ++  V  GG  +    + L
Sbjct:   192 --KIDQDNNVIQAV---IIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRL 246

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
              +  H++V TPGR++D LT  KG   L     LV+DEAD+LL+ +F+ S++ +++ +P  
Sbjct:   247 YQPVHLLVGTPGRILD-LTK-KGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPES 304

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             RQ  +FSAT    VK  +   L NP  I    +  T+  + Q Y FV  + K   L  + 
Sbjct:   305 RQILMFSATFPVTVKDFKDRFLTNPYVINLMDEL-TLKGITQFYAFVEERQKIHCLNTLF 363

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
             +++  + +++F  + +   LLA  +  LG     I   M Q  R    + F+ G C  L+
Sbjct:   364 SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLV 423

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL-Q 367
             CTD+ +RG+DI +V++VIN+D P N++ Y+H              ++L+  YE  + L +
Sbjct:   424 CTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLIT-YEDRFNLYR 482

Query:   368 IEKLIG 373
             IE+ +G
Sbjct:   483 IEQELG 488


>WB|WBGene00000479 [details] [associations]
            symbol:cgh-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
            to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
            evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
            evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
            [GO:0007052 "mitotic spindle organization" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
            regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
            helicase activity" evidence=ISS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0017148 "negative regulation of translation"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
            GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
            GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
            GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
            GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
            GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
            RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
            DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
            PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
            GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
            WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
            HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
            NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            Uniprot:Q95YF3
        Length = 430

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 118/362 (32%), Positives = 195/362 (53%)

Query:     1 MAEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
             + + K V+ F++  L  +L+      GW+ PS IQ  +I  AL G+D++  A+ G+GKTG
Sbjct:    37 VTDTKGVE-FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTG 95

Query:    61 AFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 120
             A+ +P+++ +      Q  + A  A V+ PTRELA+Q S+    L   I L+  V  GG 
Sbjct:    96 AYCIPVIEKI------QPALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGT 149

Query:   121 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLD 179
             D+    + L    H+V+ATPGR++D +   KG + +   K LVLDEAD+LL+ DF+  LD
Sbjct:   150 DLRDDIMRLNGTVHLVIATPGRILDLME--KGVAKMEHCKTLVLDEADKLLSQDFQGILD 207

Query:   180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY 239
              ++N +P+ RQ  L+SAT    V    +  +  P +I    + + +  + Q Y FV  K 
Sbjct:   208 RLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLG-VTQYYAFVQEKQ 266

Query:   240 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 299
             K   L  +  ++  + +++F  +     LLA  +  +G     I   M+Q+ R    + F
Sbjct:   267 KVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDF 326

Query:   300 KAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQ 359
             + G C  L+C+D+ +RG+DI +V++VIN+D P N++ Y+H              I+L+  
Sbjct:   327 RQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLIT- 385

Query:   360 YE 361
             YE
Sbjct:   386 YE 387


>UNIPROTKB|Q95YF3 [details] [associations]
            symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
            species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
            GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
            GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
            GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
            GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
            GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
            RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
            DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
            PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
            GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
            WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
            HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
            NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            Uniprot:Q95YF3
        Length = 430

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 118/362 (32%), Positives = 195/362 (53%)

Query:     1 MAEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
             + + K V+ F++  L  +L+      GW+ PS IQ  +I  AL G+D++  A+ G+GKTG
Sbjct:    37 VTDTKGVE-FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTG 95

Query:    61 AFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 120
             A+ +P+++ +      Q  + A  A V+ PTRELA+Q S+    L   I L+  V  GG 
Sbjct:    96 AYCIPVIEKI------QPALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGT 149

Query:   121 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLD 179
             D+    + L    H+V+ATPGR++D +   KG + +   K LVLDEAD+LL+ DF+  LD
Sbjct:   150 DLRDDIMRLNGTVHLVIATPGRILDLME--KGVAKMEHCKTLVLDEADKLLSQDFQGILD 207

Query:   180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY 239
              ++N +P+ RQ  L+SAT    V    +  +  P +I    + + +  + Q Y FV  K 
Sbjct:   208 RLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLG-VTQYYAFVQEKQ 266

Query:   240 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 299
             K   L  +  ++  + +++F  +     LLA  +  +G     I   M+Q+ R    + F
Sbjct:   267 KVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDF 326

Query:   300 KAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQ 359
             + G C  L+C+D+ +RG+DI +V++VIN+D P N++ Y+H              I+L+  
Sbjct:   327 RQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLIT- 385

Query:   360 YE 361
             YE
Sbjct:   386 YE 387


>UNIPROTKB|A4RGU2 [details] [associations]
            symbol:DBP4 "ATP-dependent RNA helicase DBP4"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
            InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
            RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
            EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
            Uniprot:A4RGU2
        Length = 798

 Score = 517 (187.1 bits), Expect = 3.5e-49, P = 3.5e-49
 Identities = 125/338 (36%), Positives = 185/338 (54%)

Query:     8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL 67
             K F EL L +   +   +  ++T + IQA AIP AL+G+D++G A+TGSGKT AF +P+L
Sbjct:    49 KAFAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLL 108

Query:    68 QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
             + L      Q       A VLSPTRELA+Q  +    +G        +++GG  + ++  
Sbjct:   109 EKLYREQWTQEA--KLGALVLSPTRELAVQTFQVLRKIGRHHLFSAGLVIGGKSVREEAE 166

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             AL  R +I++ TPGR++ HL  T GF +  L+ LVLDEADR+++  F++ +D ++  +P 
Sbjct:   167 ALS-RMNILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPT 225

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYK-DCYL 244
              RQT LFSAT +KKV  L R  LK+P  V + A +  +T  TL+Q Y   P   K D   
Sbjct:   226 TRQTLLFSATQSKKVSDLARLSLKDPEYVSVHAEATTATPSTLQQHYIVTPLPEKLDTLW 285

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI---SGHMSQSKRLGALNKFKA 301
              +I   +  S  +VF  +    R +    R + Q  IP+    G   Q  RL    +F +
Sbjct:   286 GFIKANLK-SKMVVFLSSGKQVRFVYESFRQM-QPGIPLLHMHGRQKQLARLDVTKRFDS 343

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              +   L  TDV +RG+D   VD V+  D P ++ DYIH
Sbjct:   344 SKHACLFATDVIARGIDFTGVDWVVQVDAPEDTDDYIH 381


>UNIPROTKB|Q08DT0 [details] [associations]
            symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
            OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
            EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
            EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
            EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
            EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
            RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
            Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
            InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
        Length = 876

 Score = 519 (187.8 bits), Expect = 3.8e-49, P = 3.8e-49
 Identities = 118/338 (34%), Positives = 183/338 (54%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             E+  F +  L  + ++  +   ++  ++IQ + I  AL+GKD++G A+TGSGKT AF +P
Sbjct:    67 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVP 126

Query:    66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
             +L+AL  +     +       ++SPTRELA Q  E    +G        +++GG D+  +
Sbjct:   127 VLEALYRL--QWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                +    +I+V TPGRL+ H+  T  F    L+ LVLDEADR+L+  F  +++ I+  +
Sbjct:   185 AERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
             P+ RQT LFSAT TK VK L R  LKNP  V +   +KYST  TL+Q Y     + K   
Sbjct:   244 PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISV 303

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKA 301
             L   L       ++VF  +C   + L  +   L  G   + + G   Q +R+   N+F  
Sbjct:   304 LYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNEFVR 363

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
                 +L  TD+A+RGLD P+V+ V+ +D P ++  YIH
Sbjct:   364 KRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 401


>TIGR_CMR|CPS_1418 [details] [associations]
            symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
            GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
            BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
        Length = 401

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 126/368 (34%), Positives = 189/368 (51%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F  L L   ++ A  ++G+  P+ IQ +AIP  L GKD+I  AQTG+GKT +F LP+L+
Sbjct:     2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61

Query:    69 AL-LEIAENQRTVPA--FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
              L  +  E  + + A    A +L PTRELA+Q+          + +    + GGVD  +Q
Sbjct:    62 QLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQEQ 121

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                L     I+VATPGRL+D +T+ +      L  LVLDEADR+L+  F   +++I+  +
Sbjct:   122 KQRLIWGVDILVATPGRLLD-MTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERL 180

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV 245
             P  RQ  LFSATM+++V+ L +  +  PV+I   +  ++   ++Q    V    K   L 
Sbjct:   181 PEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKPKIEQWLVTVDKANKSALLS 240

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
             +I+T  +    ++F  T      L   L   G  A  I    +Q  R   LN FK+G+  
Sbjct:   241 HIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSGKIK 300

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWY 365
              L+ T +A+RGLDI  +  VINYD+P    DYIH              ISLV++      
Sbjct:   301 FLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNFREL 360

Query:   366 LQIEKLIG 373
               IE  +G
Sbjct:   361 CAIESRLG 368


>UNIPROTKB|Q8EGU0 [details] [associations]
            symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
            OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
            GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
            ProtClustDB:CLSK906294 Uniprot:Q8EGU0
        Length = 456

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 126/366 (34%), Positives = 194/366 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F  LGL   L+ A    G++  +++Q + IP AL GKD++  AQTG+GKT AFALP+L+ 
Sbjct:     3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE- 61

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
               ++A      P   A V++PTRELAIQ+    +     + L+   + GG +M  Q   +
Sbjct:    62 --QLAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGV 119

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
              +   I+VATPGRL D +       L ++  LV+DEADR+L+  F + ++++  +I  + 
Sbjct:   120 EQGVDILVATPGRLFD-IIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVH 178

Query:   190 QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT 249
             QT LFSAT +  VK+L    L  P  +  A   +T  T++Q    V  + K   L  ++ 
Sbjct:   179 QTMLFSATYSDAVKQLSHKMLNQPQWVNVAEN-TTASTVEQLVYRVDKRRKAELLSELVG 237

Query:   250 EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILIC 309
               +    +VF  T +    L   L   G  A    G  +Q  R   L+ FKAG+  +L+ 
Sbjct:   238 RNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVA 297

Query:   310 TDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIE 369
             TDVA+RGLDI ++ +VIN ++P  ++DY+H              IS V+  + E   +IE
Sbjct:   298 TDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIE 357

Query:   370 KLIGKK 375
              LIG+K
Sbjct:   358 ALIGEK 363


>TIGR_CMR|SO_1501 [details] [associations]
            symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
            OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
            GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
            ProtClustDB:CLSK906294 Uniprot:Q8EGU0
        Length = 456

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 126/366 (34%), Positives = 194/366 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F  LGL   L+ A    G++  +++Q + IP AL GKD++  AQTG+GKT AFALP+L+ 
Sbjct:     3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE- 61

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
               ++A      P   A V++PTRELAIQ+    +     + L+   + GG +M  Q   +
Sbjct:    62 --QLAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGV 119

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
              +   I+VATPGRL D +       L ++  LV+DEADR+L+  F + ++++  +I  + 
Sbjct:   120 EQGVDILVATPGRLFD-IIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVH 178

Query:   190 QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT 249
             QT LFSAT +  VK+L    L  P  +  A   +T  T++Q    V  + K   L  ++ 
Sbjct:   179 QTMLFSATYSDAVKQLSHKMLNQPQWVNVAEN-TTASTVEQLVYRVDKRRKAELLSELVG 237

Query:   250 EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILIC 309
               +    +VF  T +    L   L   G  A    G  +Q  R   L+ FKAG+  +L+ 
Sbjct:   238 RNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVA 297

Query:   310 TDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIE 369
             TDVA+RGLDI ++ +VIN ++P  ++DY+H              IS V+  + E   +IE
Sbjct:   298 TDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIE 357

Query:   370 KLIGKK 375
              LIG+K
Sbjct:   358 ALIGEK 363


>TAIR|locus:2081061 [details] [associations]
            symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
            "vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
            evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
            PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
            SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
            UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
            PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
            KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
            HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
            ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
            Uniprot:Q9SQV1
        Length = 1088

 Score = 520 (188.1 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 124/336 (36%), Positives = 186/336 (55%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF+  GL  E++    + G+ +P+ IQA+  P AL+ +D++ +A+TGSGKT  + +P   
Sbjct:   436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L     + R  P     +L+PTRELA QI ++    G    + C  L GG     Q   
Sbjct:   496 LLRHCRNDSRNGPTVL--ILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKE 553

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L +   IVVATPGRL D L   K      +  LVLDEADR+L+  FE  + +I+N IP  
Sbjct:   554 LERGADIVVATPGRLNDIL-EMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPR 612

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAA--SKYSTVDTLKQQYRFVPAKYKDCYLVY 246
             RQT +++AT  K+V+K+    L NPV++      + +    + Q    VP   K+  L  
Sbjct:   613 RQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQ 672

Query:   247 IL-TEVSASSTMVFTRTCDATRLLALMLRNLGQR--AIPISGHMSQSKRLGALNKFKAGE 303
             IL ++   S  ++F   C   RL   + R++G+   A+ I G  +Q +R   LN+F++G+
Sbjct:   673 ILRSQERGSKVIIF---CSTKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLNQFRSGK 729

Query:   304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
               +LI TDVA+RGLDI  + +VINYD PT  +DY+H
Sbjct:   730 SCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVH 765


>UNIPROTKB|E2RC35 [details] [associations]
            symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
            InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
            CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
            Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
            Uniprot:E2RC35
        Length = 871

 Score = 516 (186.7 bits), Expect = 7.9e-49, P = 7.9e-49
 Identities = 117/338 (34%), Positives = 183/338 (54%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             E+  F +  L  + ++  +   ++  ++IQ + I  AL+GKD++G A+TGSGKT AF +P
Sbjct:    67 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVP 126

Query:    66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
             +L+AL  +     +       ++SPTRELA Q  E    +G        +++GG D+  +
Sbjct:   127 VLEALYRL--QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                +    +I+V TPGRL+ H+  T  F    L+ LVLDEADR+L+  F  +++ I+  +
Sbjct:   185 AERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
             P+ RQT LFSAT TK VK L R  LKNP  + +   +KYST  TL+Q Y     + K   
Sbjct:   244 PKKRQTLLFSATQTKSVKDLARLSLKNPEYIWVHEKAKYSTPATLEQNYIVCELQQKISV 303

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKA 301
             L   L       ++VF  +C   + L  +   L  G   + + G   Q +R+   N+F  
Sbjct:   304 LYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVR 363

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
                 +L  TD+A+RGLD P+V+ V+ +D P ++  YIH
Sbjct:   364 KRSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 401


>TIGR_CMR|GSU_0522 [details] [associations]
            symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
            "RNA catabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
            RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
            KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
            BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
        Length = 443

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 125/353 (35%), Positives = 188/353 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F +L L +++++   + G+   + IQ + +P +L GKD+ G AQTG+GKT AF + +   
Sbjct:     3 FADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTK 62

Query:    70 LLEIAEN-QRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
             LL      +R  P   A +L+PTREL +QI +  + LG+        + GGVD M+Q  A
Sbjct:    63 LLRSGRGGERRHPR--AIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNA 120

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L +   +VV TPGRL+D+L   K +SL  ++ LV+DEADR+ +  F   L  IL  +P  
Sbjct:   121 LKEGADVVVGTPGRLIDYLKQ-KVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPY 179

Query:   189 --RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
               RQ  +FSAT+ ++V +L    +  P K+    +  T + ++Q    V  K K   L+ 
Sbjct:   180 DKRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLG 239

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             +L +     TM+F  T      L   L         ISG + Q KRL  L  FK+G+  I
Sbjct:   240 LLRKEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPI 299

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQ 359
             +I TDVASRGL I  V  VINYD+P +++DY+H              IS+ ++
Sbjct:   300 MIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADE 352


>SGD|S000002319 [details] [associations]
            symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
            decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
            translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
            "deadenylation-dependent decapping of nuclear-transcribed mRNA"
            evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
            [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
            evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
            GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
            GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
            GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
            GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
            OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
            RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
            SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
            STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
            GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
            EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
            GermOnline:YDL160C Uniprot:P39517
        Length = 506

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 114/365 (31%), Positives = 195/365 (53%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             TF++  L+ EL+      G++ PS IQ EAIP A+ G+D++  A+ G+GKT AF +P L+
Sbjct:    47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 106

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
                ++      + A    ++ PTRELA+Q S+    LG    + C V  GG ++    L 
Sbjct:   107 ---KVKPKLNKIQAL---IMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR 160

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L +  HI+V TPGR++D L + K   L      ++DEAD++L+ DF+  +++IL+ +P  
Sbjct:   161 LNETVHILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT 219

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
              Q+ LFSAT    VK+     L  P +I    +  T+  + Q Y FV  + K   L  + 
Sbjct:   220 HQSLLFSATFPLTVKEFMVKHLHKPYEINLMEEL-TLKGITQYYAFVEERQKLHCLNTLF 278

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
             +++  +  ++F  + +   LLA  + +LG         M Q +R    ++F+ G+   L+
Sbjct:   279 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 338

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
             C+D+ +RG+DI +V++VIN+D P  ++ Y+H              I+L+N  +     +I
Sbjct:   339 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 398

Query:   369 EKLIG 373
             E+ +G
Sbjct:   399 EQELG 403


>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
            symbol:PFL2475w "DEAD/DEAH box helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
            ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
            GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
            HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
            Uniprot:Q8I4R9
        Length = 717

 Score = 331 (121.6 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 78/207 (37%), Positives = 120/207 (57%)

Query:    28 WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLE---IAENQRTVPAFF 84
             +  P+ IQ + IP ALEGK ++  ++TGSGKT AF LPIL+ LL+   I   +  +   +
Sbjct:   107 FSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKGSY 166

Query:    85 ----ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATP 140
                 A +L PTREL++Q  +   +L   +++  ++  GG+D+ QQ     KR  I V TP
Sbjct:   167 NITKALILLPTRELSLQCYDVIRSLTKYVTITYSLFCGGIDIKQQEYEFKKRNDIFVCTP 226

Query:   141 GRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 200
             GR++D L N+    +  L+ +V DEAD+LL   F++   +IL+V    +Q   FSAT+T 
Sbjct:   227 GRILDLLLNSSSDFINYLEIVVFDEADKLLELGFKEECLKILDVCKFKKQILFFSATLTS 286

Query:   201 KVKKLQRACLKNPVKIEAASKYS-TVD 226
              +K+L    LKNPV I++   +   VD
Sbjct:   287 DIKQLANFSLKNPVFIQSGMSFDKNVD 313

 Score = 211 (79.3 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 43/127 (33%), Positives = 73/127 (57%)

Query:   214 VKIEAASKYSTVDTLKQQY-RFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 272
             +KI   + +   + LKQ++   +  KY+   L+Y+   +  +  ++F +T   T L+ L+
Sbjct:   346 LKISNKASFKISENLKQEFVNIIQEKYRKASLLYLCNNIYKNHCIIFFKTKRETHLMYLL 405

Query:   273 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 332
                L  R   + G MSQ KR+ ++ KFK  E + L+ T++ASRG+DI  V  VINY++P+
Sbjct:   406 FDLLNLRCAELHGSMSQKKRIESIMKFKKAEVDFLLTTELASRGIDIDHVLYVINYNVPS 465

Query:   333 NSKDYIH 339
             N   Y+H
Sbjct:   466 NVIKYVH 472


>UNIPROTKB|Q8I4R9 [details] [associations]
            symbol:PFL2475w "DEAD/DEAH box helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
            ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
            GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
            HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
            Uniprot:Q8I4R9
        Length = 717

 Score = 331 (121.6 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 78/207 (37%), Positives = 120/207 (57%)

Query:    28 WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLE---IAENQRTVPAFF 84
             +  P+ IQ + IP ALEGK ++  ++TGSGKT AF LPIL+ LL+   I   +  +   +
Sbjct:   107 FSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKGSY 166

Query:    85 ----ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATP 140
                 A +L PTREL++Q  +   +L   +++  ++  GG+D+ QQ     KR  I V TP
Sbjct:   167 NITKALILLPTRELSLQCYDVIRSLTKYVTITYSLFCGGIDIKQQEYEFKKRNDIFVCTP 226

Query:   141 GRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 200
             GR++D L N+    +  L+ +V DEAD+LL   F++   +IL+V    +Q   FSAT+T 
Sbjct:   227 GRILDLLLNSSSDFINYLEIVVFDEADKLLELGFKEECLKILDVCKFKKQILFFSATLTS 286

Query:   201 KVKKLQRACLKNPVKIEAASKYS-TVD 226
              +K+L    LKNPV I++   +   VD
Sbjct:   287 DIKQLANFSLKNPVFIQSGMSFDKNVD 313

 Score = 211 (79.3 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 43/127 (33%), Positives = 73/127 (57%)

Query:   214 VKIEAASKYSTVDTLKQQY-RFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALM 272
             +KI   + +   + LKQ++   +  KY+   L+Y+   +  +  ++F +T   T L+ L+
Sbjct:   346 LKISNKASFKISENLKQEFVNIIQEKYRKASLLYLCNNIYKNHCIIFFKTKRETHLMYLL 405

Query:   273 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 332
                L  R   + G MSQ KR+ ++ KFK  E + L+ T++ASRG+DI  V  VINY++P+
Sbjct:   406 FDLLNLRCAELHGSMSQKKRIESIMKFKKAEVDFLLTTELASRGIDIDHVLYVINYNVPS 465

Query:   333 NSKDYIH 339
             N   Y+H
Sbjct:   466 NVIKYVH 472


>ZFIN|ZDB-GENE-071022-2 [details] [associations]
            symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
            Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
            Uniprot:F1QMM9
        Length = 875

 Score = 514 (186.0 bits), Expect = 1.3e-48, P = 1.3e-48
 Identities = 119/339 (35%), Positives = 180/339 (53%)

Query:     5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             KE   F +  L  + ++      ++ P++IQ + I  AL+G+D++G A+TGSGKT AF +
Sbjct:    67 KEAVKFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLI 126

Query:    65 PILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124
             P+L+ L    E    +    A ++SPTRELA Q  E    +G        +++GG D+  
Sbjct:   127 PVLECLYR--EQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKD 184

Query:   125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
             ++  +  R +I++ TPGRL+ H+  T  F    L  LVLDEADR+L+  F  +L+ I+  
Sbjct:   185 ESEKI-HRTNIIICTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVEN 243

Query:   185 IPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYKDC 242
             +P+ RQT LFSAT T+ VK L R  LK+P  V +   +K+ST  TL+Q Y       K  
Sbjct:   244 LPKSRQTLLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVN 303

Query:   243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFK 300
              L   L        +VF   C   + L  +   L  G   + + G   Q KR+   N F 
Sbjct:   304 MLYSFLRSHLQKKIIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFV 363

Query:   301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
                  +L  TD+A+RGLD P+V+ V+ +D P ++  YIH
Sbjct:   364 RKTSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 402


>FB|FBgn0004419 [details] [associations]
            symbol:me31B "maternal expression at 31B" species:7227
            "Drosophila melanogaster" [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS;NAS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0000932 "cytoplasmic
            mRNA processing body" evidence=IDA] [GO:0033962 "cytoplasmic mRNA
            processing body assembly" evidence=IMP] [GO:0005875 "microtubule
            associated complex" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
            evidence=IGI] [GO:0043186 "P granule" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005875 GO:GO:0007095 EMBL:AE014134 GO:GO:0003723
            GO:GO:0000932 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0033962 GO:GO:0004004 eggNOG:COG0513
            GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 EMBL:M59926 EMBL:AY051663
            PIR:A39157 RefSeq:NP_523533.2 RefSeq:NP_723539.1 UniGene:Dm.2770
            ProteinModelPortal:P23128 SMR:P23128 IntAct:P23128 MINT:MINT-769276
            STRING:P23128 PaxDb:P23128 PRIDE:P23128 EnsemblMetazoa:FBtr0079975
            GeneID:34364 KEGG:dme:Dmel_CG4916 CTD:34364 FlyBase:FBgn0004419
            InParanoid:P23128 OrthoDB:EOG45QFVG PhylomeDB:P23128 ChiTaRS:me31B
            GenomeRNAi:34364 NextBio:788139 Bgee:P23128 GermOnline:CG4916
            Uniprot:P23128
        Length = 459

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 121/365 (33%), Positives = 196/365 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F+E  L+ EL+      GW+ PS IQ  AIP AL GKD++  A+ G+GKTGA+ +P+L+ 
Sbjct:    60 FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 119

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             +        T     A V+ PTRELA+Q S+    L   + +R  V  GG  +    L +
Sbjct:   120 I------DPTKDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRI 173

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
              ++  +++ATPGR++D L + K   +   + LVLDEAD+LL+ DF+  LD ++  +P+  
Sbjct:   174 YQKVQLIIATPGRILD-LMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDP 232

Query:   190 QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT 249
             Q  LFSAT    VK      L+ P +I    +  T+  + Q Y FV  + K   L  + +
Sbjct:   233 QILLFSATFPLTVKNFMEKHLREPYEINLMEEL-TLKGVTQYYAFVQERQKVHCLNTLFS 291

Query:   250 EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILIC 309
             ++  + +++F  +     LLA  +  LG     I   M+Q+ R    + F+ G C  L+C
Sbjct:   292 KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVC 351

Query:   310 TDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL-QI 368
             +D+ +RG+D+ +V++VIN+D P  ++ Y+H              I+L+  YE  + L +I
Sbjct:   352 SDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLIT-YEDRFDLHRI 410

Query:   369 EKLIG 373
             EK +G
Sbjct:   411 EKELG 415


>RGD|1559513 [details] [associations]
            symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
            IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
            NextBio:667517 Uniprot:D4ADJ9
        Length = 621

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 124/344 (36%), Positives = 190/344 (55%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +K+FKE+ L   ++   +  G   P+ IQ + IP  L G+D+IG+A TGSGKT  F LP+
Sbjct:   179 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 238

Query:    67 LQALLE----IAENQRTVPAFFACVLSPTRELAIQ---ISEQFEAL---GSGISLRCAVL 116
             +   LE    +  ++R  P  +  ++ P+RELA Q   I E +  L    S   L CA+ 
Sbjct:   239 IMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALC 296

Query:   117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176
             +GGV + +Q   +    HI+VATPGRLMD L   K  SL   +YL LDEADR+++  FE 
Sbjct:   297 IGGVSLKEQMETMRHGVHIMVATPGRLMD-LLQKKMVSLDICRYLALDEADRMIDMGFEG 355

Query:   177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA-SKYSTVDTLKQQYRFV 235
              +  I +     RQT LFSATM KK++   ++ L  PV I    +  +++D + Q+  +V
Sbjct:   356 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVI-QEVEYV 414

Query:   236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
               + K  YL+  L +      +   +  D   +   +L   G  A+ I G   Q +R  A
Sbjct:   415 KEEAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLK-GVEAVAIHGGKDQEERTKA 473

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P   ++Y+H
Sbjct:   474 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 517


>RGD|1308990 [details] [associations]
            symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
            species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
            IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
            Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
            UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
        Length = 874

 Score = 513 (185.6 bits), Expect = 1.7e-48, P = 1.7e-48
 Identities = 117/338 (34%), Positives = 182/338 (53%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             E+  F +  L  + ++  +   ++  ++IQ + I  AL+GKD++G A+TGSGKT AF +P
Sbjct:    67 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVP 126

Query:    66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
             +L+AL  +     +       ++SPTRELA Q  E    +G        +++GG D+  +
Sbjct:   127 VLEALYRL--QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                +    +I+V TPGRL+ H+  T  F    L+ LVLDEADR+L+  F  +++ I+  +
Sbjct:   185 AERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
             P+ RQT LFSAT TK VK L R  LK+P  V +   +KYST  TL+Q Y       K   
Sbjct:   244 PKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISV 303

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKA 301
             L   L       ++VF  +C   + L  +   L  G   + + G   Q +R+   N+F  
Sbjct:   304 LFSFLRSHLTKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVR 363

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
                 +L  TD+A+RGLD P+V+ V+ +D P ++  YIH
Sbjct:   364 KRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 401


>DICTYBASE|DDB_G0284017 [details] [associations]
            symbol:ddx10 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
            GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
            STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
            GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
        Length = 878

 Score = 513 (185.6 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 126/335 (37%), Positives = 182/335 (54%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             FK+L +    ++A     +   + IQ  ++PH L G+D++G A+TGSGKT +F LPIL+ 
Sbjct:   143 FKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPILET 202

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L      +       A VLSPTRELAIQI +  +A+G   +    +++GG ++ Q+   +
Sbjct:   203 LWRNRWGRDD--GIGAIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQQEKDKI 260

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
                 +I++ATPGRL+ H+  T GF    LK LVLDEADR+L+  F K L+ I+  +PR R
Sbjct:   261 NAM-NILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENLPRER 319

Query:   190 QTYLFSATMTKKVKKLQRACLKNPVKIEAASK--YSTVDTLKQQYRFVPAKYK-DCYLVY 246
             QT LFSAT TK ++ L R  L+ P  I    K   +T   L Q    +P + K +    +
Sbjct:   320 QTLLFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTLCVIPLEMKLNMLFSF 379

Query:   247 ILTEVSASSTMVFTRTCDATRLL--ALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
             I T ++ S  +VF  +C   R       L N G    P+ G M Q  RL     F   + 
Sbjct:   380 IKTHLT-SKIIVFFASCKQVRFAHETFKLLNPGTTLFPLHGKMKQWTRLEVFEDFCKKKA 438

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
               L  TD+A+RGLD P+V+ VI  D P + + YIH
Sbjct:   439 GTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIH 473


>ZFIN|ZDB-GENE-070912-83 [details] [associations]
            symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
            EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
            Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
        Length = 485

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 116/367 (31%), Positives = 208/367 (56%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ EL+     +GW+ PS IQ E+IP AL G+D++  A+ G+GK+GA+ +P+L+ 
Sbjct:    99 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 158

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTLA 128
             + ++ ++  ++ A  A V+ PTRELA+Q+S+    +   +  ++     GG ++    + 
Sbjct:   159 I-DLKKD--SIQA--AVVIVPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMR 213

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             L +  H+V+ATPGR++D +   KG + +G ++ +VLDEAD+LL+ DF + ++EIL+ + +
Sbjct:   214 LDETVHVVIATPGRILDLIK--KGVAKVGQVQMIVLDEADKLLSQDFVQMMEEILSSLSK 271

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQ  L+SAT    V+K   + L+ P +I    +  T+  + Q Y +V  + K   L  +
Sbjct:   272 QRQILLYSATFPLSVQKFMNSHLQKPYEINLMEEL-TLKGVTQYYAYVTERQKVHCLNTL 330

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
              + +  + +++F  +     LLA  +  LG     I   M Q  R    + F+ G C  L
Sbjct:   331 FSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNL 390

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             +CTD+ +RG+DI +V++VIN+D P   + Y+H              I+L+  Y+  + L+
Sbjct:   391 VCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRSGRFGHLGLAINLIT-YDDRFNLK 449

Query:   368 -IEKLIG 373
              IE+ +G
Sbjct:   450 GIEEQLG 456


>MGI|MGI:1924841 [details] [associations]
            symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
            OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
            IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
            ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
            PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
            Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
            UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
            CleanEx:MM_DDX10 Genevestigator:Q80Y44
            GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
        Length = 875

 Score = 512 (185.3 bits), Expect = 2.2e-48, P = 2.2e-48
 Identities = 117/338 (34%), Positives = 182/338 (53%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             E+  F +  L  + ++  +   ++  ++IQ + I  AL+GKD++G A+TGSGKT AF +P
Sbjct:    67 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVP 126

Query:    66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
             +L+AL  +     +       ++SPTRELA Q  E    +G        +++GG D+  +
Sbjct:   127 VLEALYRL--QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                +    +I+V TPGRL+ H+  T  F    L+ LVLDEADR+L+  F  +++ I+  +
Sbjct:   185 AERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
             P+ RQT LFSAT TK VK L R  LK+P  V +   +KYST  TL+Q Y       K   
Sbjct:   244 PKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISV 303

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKA 301
             L   L       ++VF  +C   + L  +   L  G   + + G   Q +R+   N+F  
Sbjct:   304 LFSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVR 363

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
                 +L  TD+A+RGLD P+V+ V+ +D P ++  YIH
Sbjct:   364 KRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIH 401


>RGD|1311758 [details] [associations]
            symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
            evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
            "defense response to virus" evidence=IEA;ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
            RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
            Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
            UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
            Uniprot:B2RYL8
        Length = 622

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 123/344 (35%), Positives = 191/344 (55%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +K+FKE+ L   ++   +  G   P+ IQ + IP  L G+D+IG+A TGSGKT  F LP+
Sbjct:   180 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query:    67 LQALLE----IAENQRTVPAFFACVLSPTRELAIQ---ISEQFEAL---GSGISLRCAVL 116
             +   LE    +  ++R  P  +  ++ P+RELA Q   I E +  L    S   LRCA+ 
Sbjct:   240 IMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALC 297

Query:   117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176
             +GG+ + +Q   +    H++VATPGRLMD L   K  SL   +YL LDEADR+++  FE 
Sbjct:   298 IGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMVSLDICRYLALDEADRMIDMGFEG 356

Query:   177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA-SKYSTVDTLKQQYRFV 235
              +  I +     RQT LFSATM KK++   ++ L  PV I    +  +++D + Q+  +V
Sbjct:   357 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVI-QEVEYV 415

Query:   236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
               + K  YL+  L +      +   +  D   +   +L   G  A+ I G   Q +R  A
Sbjct:   416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK-GVEAVAIHGGKDQEERTKA 474

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P   ++Y+H
Sbjct:   475 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518


>WB|WBGene00006888 [details] [associations]
            symbol:vbh-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0032502 "developmental process"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
            germ-line" evidence=IMP] [GO:0042127 "regulation of cell
            proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
            GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
            GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
            GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
            ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
            MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
            EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
            GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
            WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
            ArrayExpress:Q65XX1 Uniprot:Q65XX1
        Length = 660

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 132/349 (37%), Positives = 196/349 (56%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             ++ F E G    ++E     G+  P+ +Q  +IP  L  +DL+  AQTGSGKT AF LPI
Sbjct:   138 IEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPI 197

Query:    67 LQALLEIAENQRTVPAF-------FAC--VLSPTRELAIQISEQFEALGSGISLRCAVLV 117
             +Q +L    +    PAF       + C  VLSPTRELAIQI ++        +++ A+L 
Sbjct:   198 IQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILY 257

Query:   118 GGVDMMQ-QTLALGKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDDFE 175
             GG +  + Q   L    HI++ATPGRL+D +   +GF  L   +YLVLDEADR+L+  FE
Sbjct:   258 GGRENYRDQVNRLRAGTHILIATPGRLIDIIE--QGFIGLAGCRYLVLDEADRMLDMGFE 315

Query:   176 KSLDEILN--VIPRM-RQTYLFSATMTKKVKKLQRACLK-NPVKIEAASKYSTVDTLKQQ 231
               + +I+   + P+  R T +FSAT  K+++ L +  LK N + +      ST + ++Q+
Sbjct:   316 PQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQR 375

Query:   232 YRFVPAKYKDCYLVYIL-TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQS 290
               +V    K   L+ IL  E S +  +VF  T      LA  L     R++ I G + Q 
Sbjct:   376 LLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQI 435

Query:   291 KRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +R   L  F++G+C IL+ T VA+RGLDIP+V  VINYD+P +S +Y+H
Sbjct:   436 ERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVH 484


>DICTYBASE|DDB_G0287361 [details] [associations]
            symbol:ddx41 "DEAD box protein abstrakt"
            species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
            GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
            EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
            IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
            KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
        Length = 671

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 126/345 (36%), Positives = 189/345 (54%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP- 65
             + TFKE+ +   +++     G K PS IQ + +P  L G+D+IG+A TGSGKT  F LP 
Sbjct:   221 ITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPM 280

Query:    66 ILQALLEIAEN---QRTVPAFFACVLSPTRELAIQ----ISEQFEAL---GSGISLRCAV 115
             +L AL E  +    Q   P  F  +L P+RELA Q    ++    AL   G    LR  +
Sbjct:   281 VLFALEEECKLPIIQGEGP--FGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLL 338

Query:   116 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE 175
              +GG+D+ +Q     K  H+++ATPGRL+D L N K  +    KYL LDEADRL++  FE
Sbjct:   339 AIGGIDLREQEHIFKKGVHMIIATPGRLLD-LLNKKKINFKLCKYLGLDEADRLIDLGFE 397

Query:   176 KSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFV 235
               +  +L+     RQT LFSATM KK+++  R+ L  PV++      +    + Q+  FV
Sbjct:   398 DDIRSVLDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFV 457

Query:   236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLA-LMLRNLGQRAIPISGHMSQSKRLG 294
               + K  YL+  L +      +      D   +   L+L+ +   A+ I G  SQ +R  
Sbjct:   458 KPEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQV--EAVSIHGDKSQDERES 515

Query:   295 ALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             A+  F+ G+ ++L+ TDVAS+GLD P +  VIN+D+P   ++YIH
Sbjct:   516 AIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIH 560


>UNIPROTKB|Q8EIE5 [details] [associations]
            symbol:dbpA "ATP-dependent RNA helicase DbpA"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
            OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
            GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
        Length = 458

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 124/332 (37%), Positives = 187/332 (56%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F  L L+ EL+E   ++G+   + IQA+++P  L G+D+IG  +TGSGKT AF L +L  
Sbjct:     3 FSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNK 62

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLA 128
             L       +T+      VL PTRELA Q++++   L  GI +++   L GGV M  Q  +
Sbjct:    63 LDVKRFRIQTL------VLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGS 116

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L    HI+V TPGR++DHL   +   L  L  LVLDEADR+L   F+  LD I+   PR 
Sbjct:   117 LEHGAHIIVGTPGRIVDHLDRNR-LDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRE 175

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQ-YRFVPAKYKDCYLVYI 247
             RQT LFSAT  ++++ + +  + NPV ++AA  +   +T++Q  Y+    K +   L  +
Sbjct:   176 RQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEK-NTIEQHFYQLDDDKSRMQALQLL 234

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
             L E    S +VF  T   T+ +A  L  LG   + + G + Q  R   L +F      +L
Sbjct:   235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             + TDVA+RGLDI ++D V NY +  +++ +IH
Sbjct:   295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIH 326


>TIGR_CMR|SO_0897 [details] [associations]
            symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
            OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
            GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
        Length = 458

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 124/332 (37%), Positives = 187/332 (56%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F  L L+ EL+E   ++G+   + IQA+++P  L G+D+IG  +TGSGKT AF L +L  
Sbjct:     3 FSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNK 62

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLA 128
             L       +T+      VL PTRELA Q++++   L  GI +++   L GGV M  Q  +
Sbjct:    63 LDVKRFRIQTL------VLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGS 116

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L    HI+V TPGR++DHL   +   L  L  LVLDEADR+L   F+  LD I+   PR 
Sbjct:   117 LEHGAHIIVGTPGRIVDHLDRNR-LDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRE 175

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQ-YRFVPAKYKDCYLVYI 247
             RQT LFSAT  ++++ + +  + NPV ++AA  +   +T++Q  Y+    K +   L  +
Sbjct:   176 RQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEK-NTIEQHFYQLDDDKSRMQALQLL 234

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
             L E    S +VF  T   T+ +A  L  LG   + + G + Q  R   L +F      +L
Sbjct:   235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             + TDVA+RGLDI ++D V NY +  +++ +IH
Sbjct:   295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIH 326


>TAIR|locus:2176192 [details] [associations]
            symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
            evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
            GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
            OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
            RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
            SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
            EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
            GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
            ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
            Uniprot:Q9LU46
        Length = 591

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 126/367 (34%), Positives = 193/367 (52%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +K FK++     +++  +  G   P+ IQ + +P  L G+D+IG+A TGSGKT  F LP+
Sbjct:   145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204

Query:    67 LQALLEIAENQRTVPAF---FACVLSPTRELAIQ---ISEQFEA--LGSGIS-LRCAVLV 117
             +   L+  E    + A       ++ P+RELA Q   + EQF A  + +G   LR  + +
Sbjct:   205 IMIALQ-EEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCI 263

Query:   118 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKS 177
             GG+DM  Q   + +  HIVVATPGRL D L   K  SL   +YL LDEADRL++  FE  
Sbjct:   264 GGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MSLDACRYLTLDEADRLVDLGFEDD 322

Query:   178 LDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA-SKYSTVDTLKQQYRFVP 236
             + E+ +     RQT LFSATM  K++   R+ L  PV +    +  + +D + Q+  +V 
Sbjct:   323 IREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVI-QEVEYVK 381

Query:   237 AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGAL 296
              + K  YL+  L + S    +      D   +   +L   G  A+ I G   Q  R  A+
Sbjct:   382 QEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLK-GVEAVAIHGGKDQEDREYAI 440

Query:   297 NKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISL 356
             + FKAG+ ++L+ TDVAS+GLD P +  VINYD+P   ++Y+H               + 
Sbjct:   441 SSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTF 500

Query:   357 VNQYELE 363
             +N+ + E
Sbjct:   501 INKNQSE 507


>UNIPROTKB|A3KN07 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
            KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
            RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
            Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
            InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
        Length = 622

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 122/344 (35%), Positives = 190/344 (55%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +K+FKE+     ++   +  G   P+ IQ + IP  L G+D+IG+A TGSGKT  F LP+
Sbjct:   180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query:    67 LQALLE----IAENQRTVPAFFACVLSPTRELAIQ---ISEQFEAL---GSGISLRCAVL 116
             +   LE    +  ++R  P  +  ++ P+RELA Q   I E +  L    S   LRCA+ 
Sbjct:   240 IMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALC 297

Query:   117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176
             +GG+ + +Q   +    H++VATPGRLMD L   K  SL   +YL LDEADR+++  FE 
Sbjct:   298 IGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMVSLDICRYLALDEADRMIDMGFEG 356

Query:   177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA-SKYSTVDTLKQQYRFV 235
              +  I +     RQT LFSATM KK++   ++ L  PV I    +  +++D + Q+  +V
Sbjct:   357 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVI-QEVEYV 415

Query:   236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
               + K  YL+  L +      +   +  D   +   +L   G  A+ I G   Q +R  A
Sbjct:   416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK-GVEAVAIHGGKDQEERTKA 474

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P   ++Y+H
Sbjct:   475 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518


>UNIPROTKB|E2R052 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
            response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
            RefSeq:XP_536417.2 ProteinModelPortal:E2R052
            Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
            NextBio:20854482 Uniprot:E2R052
        Length = 622

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 122/344 (35%), Positives = 190/344 (55%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +K+FKE+     ++   +  G   P+ IQ + IP  L G+D+IG+A TGSGKT  F LP+
Sbjct:   180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query:    67 LQALLE----IAENQRTVPAFFACVLSPTRELAIQ---ISEQFEAL---GSGISLRCAVL 116
             +   LE    +  ++R  P  +  ++ P+RELA Q   I E +  L    S   LRCA+ 
Sbjct:   240 IMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALC 297

Query:   117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176
             +GG+ + +Q   +    H++VATPGRLMD L   K  SL   +YL LDEADR+++  FE 
Sbjct:   298 IGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMVSLDICRYLALDEADRMIDMGFEG 356

Query:   177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA-SKYSTVDTLKQQYRFV 235
              +  I +     RQT LFSATM KK++   ++ L  PV I    +  +++D + Q+  +V
Sbjct:   357 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVI-QEVEYV 415

Query:   236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
               + K  YL+  L +      +   +  D   +   +L   G  A+ I G   Q +R  A
Sbjct:   416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK-GVEAVAIHGGKDQEERTKA 474

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P   ++Y+H
Sbjct:   475 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518


>UNIPROTKB|J9NZF6 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
            Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
        Length = 649

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 122/344 (35%), Positives = 190/344 (55%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +K+FKE+     ++   +  G   P+ IQ + IP  L G+D+IG+A TGSGKT  F LP+
Sbjct:   207 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 266

Query:    67 LQALLE----IAENQRTVPAFFACVLSPTRELAIQ---ISEQFEAL---GSGISLRCAVL 116
             +   LE    +  ++R  P  +  ++ P+RELA Q   I E +  L    S   LRCA+ 
Sbjct:   267 IMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALC 324

Query:   117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176
             +GG+ + +Q   +    H++VATPGRLMD L   K  SL   +YL LDEADR+++  FE 
Sbjct:   325 IGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMVSLDICRYLALDEADRMIDMGFEG 383

Query:   177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA-SKYSTVDTLKQQYRFV 235
              +  I +     RQT LFSATM KK++   ++ L  PV I    +  +++D + Q+  +V
Sbjct:   384 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVI-QEVEYV 442

Query:   236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
               + K  YL+  L +      +   +  D   +   +L   G  A+ I G   Q +R  A
Sbjct:   443 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK-GVEAVAIHGGKDQEERTKA 501

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P   ++Y+H
Sbjct:   502 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 545


>UNIPROTKB|J3KNN5 [details] [associations]
            symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
            Ensembl:ENST00000330503 Uniprot:J3KNN5
        Length = 640

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 122/344 (35%), Positives = 190/344 (55%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +K+FKE+     ++   +  G   P+ IQ + IP  L G+D+IG+A TGSGKT  F LP+
Sbjct:   198 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 257

Query:    67 LQALLE----IAENQRTVPAFFACVLSPTRELAIQ---ISEQFEAL---GSGISLRCAVL 116
             +   LE    +  ++R  P  +  ++ P+RELA Q   I E +  L    S   LRCA+ 
Sbjct:   258 IMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALC 315

Query:   117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176
             +GG+ + +Q   +    H++VATPGRLMD L   K  SL   +YL LDEADR+++  FE 
Sbjct:   316 IGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMVSLDICRYLALDEADRMIDMGFEG 374

Query:   177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA-SKYSTVDTLKQQYRFV 235
              +  I +     RQT LFSATM KK++   ++ L  PV I    +  +++D + Q+  +V
Sbjct:   375 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVI-QEVEYV 433

Query:   236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
               + K  YL+  L +      +   +  D   +   +L   G  A+ I G   Q +R  A
Sbjct:   434 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK-GVEAVAIHGGKDQEERTKA 492

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P   ++Y+H
Sbjct:   493 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 536


>UNIPROTKB|Q9UJV9 [details] [associations]
            symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
            "cellular response to interferon-beta" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0051607 "defense response to virus"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0007275 "multicellular organismal development"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
            GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
            EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
            EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
            UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
            SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
            PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
            PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
            KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
            HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
            PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
            OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
            EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
            ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
            Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
        Length = 622

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 122/344 (35%), Positives = 190/344 (55%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +K+FKE+     ++   +  G   P+ IQ + IP  L G+D+IG+A TGSGKT  F LP+
Sbjct:   180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query:    67 LQALLE----IAENQRTVPAFFACVLSPTRELAIQ---ISEQFEAL---GSGISLRCAVL 116
             +   LE    +  ++R  P  +  ++ P+RELA Q   I E +  L    S   LRCA+ 
Sbjct:   240 IMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALC 297

Query:   117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176
             +GG+ + +Q   +    H++VATPGRLMD L   K  SL   +YL LDEADR+++  FE 
Sbjct:   298 IGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMVSLDICRYLALDEADRMIDMGFEG 356

Query:   177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA-SKYSTVDTLKQQYRFV 235
              +  I +     RQT LFSATM KK++   ++ L  PV I    +  +++D + Q+  +V
Sbjct:   357 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVI-QEVEYV 415

Query:   236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
               + K  YL+  L +      +   +  D   +   +L   G  A+ I G   Q +R  A
Sbjct:   416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK-GVEAVAIHGGKDQEERTKA 474

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P   ++Y+H
Sbjct:   475 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518


>ZFIN|ZDB-GENE-040825-3 [details] [associations]
            symbol:ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            56" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-040825-3 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K14810 OMA:TFLMSAT
            GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
            EMBL:CR394525 EMBL:AY648812 IPI:IPI00491475 RefSeq:NP_001003876.1
            UniGene:Dr.79779 STRING:Q6DRE7 Ensembl:ENSDART00000034555
            GeneID:445399 KEGG:dre:445399 InParanoid:Q6DRE7 NextBio:20832104
            Uniprot:Q6DRE7
        Length = 557

 Score = 427 (155.4 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
 Identities = 110/325 (33%), Positives = 176/325 (54%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             EE  V+ F E+GL D L++A  ++GW  P+ IQ +AIP ALEGKDL+  A+TGSGKT A+
Sbjct:     2 EEDSVR-FHEMGLDDRLLKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 60

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS--LRCAVLVGGV 120
             A+P++Q +L   +  R   A  A VL PT+EL  Q+      L +  S  +R A + G  
Sbjct:    61 AVPLIQRVLTSKQTVRE-QAVRAVVLVPTKELGQQVQTMIRQLTAYCSRDVRVADISGKA 119

Query:   121 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSL-GTLKYLVLDEADRLLNDDFEKSLD 179
             D+  Q   L ++P IVV+TP R+  H+ N +   L  +L+ LV+DEAD L +  FE  L 
Sbjct:   120 DLSAQKPILMEKPDIVVSTPSRIQAHI-NAQNLQLHSSLEMLVIDEADLLFSFGFEADLK 178

Query:   180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY 239
              +L  +P++ Q +L SAT+   V+ L+   L NPV ++         +  QQ+  +  + 
Sbjct:   179 NLLCHLPKIYQAFLMSATLNDDVQALKELVLHNPVTLKLQGSQLPDSSQLQQFS-IKCEE 237

Query:   240 KDCYL-VYILTEVSA--SSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGAL 296
             +D +L +Y + ++      T++F    D +  L L L      A  ++  +    R   +
Sbjct:   238 EDKFLLIYTMLKLGLIQGKTLLFVSDVDRSYRLKLFLEQFSIPACVLNSELPVHSRCHII 297

Query:   297 NKFKAGECNILICTDVASRGLDIPS 321
             ++F  G  N +I +D   +GL+ P+
Sbjct:   298 SQFNQGFYNYIIASD--EQGLESPA 320

 Score = 92 (37.4 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query:   314 SRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQIEKLI 372
             SRG+D  +V  VIN+D PT+ + YIH              +S ++  EL    ++E  +
Sbjct:   348 SRGIDFHNVSNVINFDFPTSVESYIHRVGRTARADNPGTALSFISHAELSMLSEVENAL 406


>ASPGD|ASPL0000069536 [details] [associations]
            symbol:AN7424 species:162425 "Emericella nidulans"
            [GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
            from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
            GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
        Length = 488

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 124/322 (38%), Positives = 179/322 (55%)

Query:    27 GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86
             G+ +P+ IQ+   P    G+D+IG+A+TGSGKT AF LP L+ +L++   Q++     A 
Sbjct:    92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPL-AV 150

Query:    87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDH 146
             V+SPTRELA+QI +Q       + ++ A + GGV   +Q  AL K   +VVATPGRL D 
Sbjct:   151 VISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREAL-KSAAVVVATPGRLKD- 208

Query:   147 LTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKKVKKL 205
             L N     LG +KYLVLDEADR+L+  FE+ + +I++ +P   RQT +F+AT    V+ L
Sbjct:   209 LQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNL 268

Query:   206 QRACLKNPVKIEAASKYSTV----DTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTR 261
                 + +PV +      S        +KQ    V    K+  LV IL      +      
Sbjct:   269 ASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLA 328

Query:   262 TC----DATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGL 317
              C    +A R+  L LR  G +   I G +SQ +R  +L  FK+G   +L+ TDVA+RGL
Sbjct:   329 FCLYKKEAMRVERL-LRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGL 387

Query:   318 DIPSVDMVINYDIPTNSKDYIH 339
             DIP V +V+N   P   +DY+H
Sbjct:   388 DIPHVKLVVNVTFPLTVEDYVH 409


>TIGR_CMR|CPS_4097 [details] [associations]
            symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
            "RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
            ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
            STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
            PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
            Uniprot:Q47WS0
        Length = 430

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 128/364 (35%), Positives = 188/364 (51%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L  EL+ +   +G+  P+ IQ   IP A+ GKD++  A TG+GKT AF LPI Q 
Sbjct:    15 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74

Query:    70 LLEIAENQRTVPAF-FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
             LL+     RT P F    +L+PTRELAIQI E  E L     ++  V+ GGV+       
Sbjct:    75 LLDYP---RTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADI 131

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L     I+VATPGRL++++ N + F    ++ LVLDEADR+L+  F ++++ I+      
Sbjct:   132 LTSTTDILVATPGRLLEYIENEQ-FDAREIEILVLDEADRMLDLGFSETINRIVAEARWR 190

Query:   189 RQTYLFSATMTKK-VKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKYKDCYLVY 246
             +QT LFSAT+    V+      L  PV +E+         + Q       A +K   LV 
Sbjct:   191 KQTMLFSATLESPGVQLFAEEVLNEPVFLESKPSRKEKAVIHQWLHLADDANHKLNLLVN 250

Query:   247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
              L +     T+VF    +  + L+  L       + + G M Q KR  A+ +FK GE  +
Sbjct:   251 TLKQEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKV 310

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TDVA+RGLDI  +  VIN+D+P     YIH              ISLV  +++    
Sbjct:   311 LVATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIG 370

Query:   367 QIEK 370
             +IE+
Sbjct:   371 KIER 374


>MGI|MGI:1920185 [details] [associations]
            symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
            response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
            GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
            KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
            RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
            SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
            PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
            KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
            CleanEx:MM_DDX41 Genevestigator:Q91VN6
            GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
        Length = 622

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 122/344 (35%), Positives = 190/344 (55%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +K+FKE+     ++   +  G   P+ IQ + IP  L G+D+IG+A TGSGKT  F LP+
Sbjct:   180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query:    67 LQALLE----IAENQRTVPAFFACVLSPTRELAIQ---ISEQFEAL---GSGISLRCAVL 116
             +   LE    +  ++R  P  +  ++ P+RELA Q   I E +  L    S   LRCA+ 
Sbjct:   240 IMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALC 297

Query:   117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176
             +GG+ + +Q   +    H++VATPGRLMD L   K  SL   +YL LDEADR+++  FE 
Sbjct:   298 IGGMSVKEQMETIRHGVHMMVATPGRLMD-LLQKKMVSLDICRYLALDEADRMIDMGFEG 356

Query:   177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA-SKYSTVDTLKQQYRFV 235
              +  I +     RQT LFSATM KK++   ++ L  PV I    +  +++D + Q+  +V
Sbjct:   357 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVI-QEVEYV 415

Query:   236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
               + K  YL+  L +      +   +  D   +   +L   G  A+ I G   Q +R  A
Sbjct:   416 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK-GVEAVAIHGGKDQEERTKA 474

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P   ++Y+H
Sbjct:   475 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518


>UNIPROTKB|Q8TDD1 [details] [associations]
            symbol:DDX54 "ATP-dependent RNA helicase DDX54"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
            "transcription corepressor activity" evidence=IDA] [GO:0005102
            "receptor binding" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
            "RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
            evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
            [GO:0030520 "intracellular estrogen receptor signaling pathway"
            evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
            GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
            EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
            IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
            RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
            SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
            DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
            DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
            GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
            CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
            MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
            HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
            NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
            Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
        Length = 881

 Score = 508 (183.9 bits), Expect = 6.3e-48, P = 6.3e-48
 Identities = 129/374 (34%), Positives = 192/374 (51%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             ++K+   F+ +GL   + +     G+K P+ IQ + IP  L+GKD++ +A+TGSGKT  F
Sbjct:    91 KKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACF 150

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
              LP+ + L     + +T     A +LSPTRELA+Q  +  + LG    L+ A+++GG  M
Sbjct:   151 LLPMFERLK--THSAQTGAR--ALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRM 206

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               Q  AL + P I++ATPGRL+ H+       L +++Y+V DEADRL    F + L EI+
Sbjct:   207 EDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEII 265

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242
               +P   QT LFSAT+ K + +  RA L  PV I         + LK  +  V    K  
Sbjct:   266 ARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAA 325

Query:   243 YLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK 300
              L+++L  V      T+VF  T      L  +L         I   +  + R   L KF 
Sbjct:   326 VLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFT 385

Query:   301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQY 360
              G+C+ LI TD+A+RGLDIP +D VINY  P   K ++H               SLV   
Sbjct:   386 LGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPD 445

Query:   361 ELEWYLQIEKLIGK 374
             E+ + L +   +G+
Sbjct:   446 EIPYLLDLHLFLGR 459


>TAIR|locus:2034481 [details] [associations]
            symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
            "RNA methylation" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
            EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
            OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
            IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
            UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
            PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
            KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
            PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
            GermOnline:AT1G31970 Uniprot:Q9C551
        Length = 537

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 128/349 (36%), Positives = 195/349 (55%)

Query:     2 AEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61
             A+   +KTF E  L + +++ C+   ++ PS IQ+   P  L+G+DLIG+A+TGSGKT A
Sbjct:   110 AKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLA 167

Query:    62 FALPILQALLE----IAENQRTVPAFFAC-VLSPTRELAIQISEQFEALGSGISLRCAVL 116
             F +P +  +L+    I    + V     C VLSPTRELA+QIS+     G    L+   +
Sbjct:   168 FGIPAIMHVLKKNKKIGGGSKKVNP--TCLVLSPTRELAVQISDVLREAGEPCGLKSICV 225

Query:   117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176
              GG     Q  A+     IV+ TPGRL D L  +    L  + ++VLDEADR+L+  FE+
Sbjct:   226 YGGSSKGPQISAIRSGVDIVIGTPGRLRD-LIESNVLRLSDVSFVVLDEADRMLDMGFEE 284

Query:   177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLK-NPVKIEAAS-KYSTVDTLKQQYRF 234
              +  IL+   ++RQ  +FSAT    V KL +  +  NP+K+   S   +    + Q    
Sbjct:   285 PVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEV 344

Query:   235 VPAKYKDCYLVYILTEVSASS---TMVFTR-TCDATRLLALMLRNLGQRAIPISGHMSQS 290
             +  + +D  L+ +L +   S     +VF     +A RL    L+  G +A+ I G+ +QS
Sbjct:   345 LDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERL-ERFLQQRGWKAVSIHGNKAQS 403

Query:   291 KRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +R  +L+ FK G C +L+ TDVA+RGLDIP V++VINY  P  ++DY+H
Sbjct:   404 ERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVH 452


>ASPGD|ASPL0000036135 [details] [associations]
            symbol:AN10417 species:162425 "Emericella nidulans"
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IEA] [GO:0003724 "RNA
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0030996 "cell
            cycle arrest in response to nitrogen starvation" evidence=IEA]
            [GO:0034063 "stress granule assembly" evidence=IEA] [GO:0033962
            "cytoplasmic mRNA processing body assembly" evidence=IEA]
            [GO:0000290 "deadenylation-dependent decapping of
            nuclear-transcribed mRNA" evidence=IEA] [GO:0031142 "induction of
            conjugation upon nitrogen starvation" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:BN001306 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:HIDPARF
            EnsemblFungi:CADANIAT00009573 Uniprot:C8VHA5
        Length = 498

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 117/365 (32%), Positives = 194/365 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  ++ EL+      G++ PS IQ E IP AL G+D++  A+ G+GKT AF +P L+ 
Sbjct:    41 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 100

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             +     N ++     A +L PTRELA+Q S   + LG  + +   V  GG  +M   + L
Sbjct:   101 I-----NPKSTKTQ-ALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRL 154

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
                 HI+V TPGR++D    +KG + L      V+DEAD+LL+ +F   ++++L+  P+ 
Sbjct:   155 NDAVHILVGTPGRVLD--LASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKD 212

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             RQ  LFSAT    VK  +   ++NP +I    +  T+  + Q Y FV  K K   L  + 
Sbjct:   213 RQVMLFSATFPMIVKSFKDRHMRNPYEINLMDEL-TLRGITQYYAFVEEKQKVHCLNTLF 271

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
             +++  + +++F  + +   LLA  +  LG         M Q  R    + F+ G C  L+
Sbjct:   272 SKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 331

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
             C+D+ +RG+DI +V++VIN+D P N++ Y+H              I+L+N  +     +I
Sbjct:   332 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI 391

Query:   369 EKLIG 373
             E+ +G
Sbjct:   392 EQELG 396


>UNIPROTKB|F1NAH6 [details] [associations]
            symbol:LOC100859810 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
            [GO:0035458 "cellular response to interferon-beta" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
            to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
            EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
            Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
        Length = 607

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 121/344 (35%), Positives = 191/344 (55%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +K+FKE+     ++   +  G + P+ IQ + IP  L G+D+IG+A TGSGKT  F LP+
Sbjct:   176 IKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 235

Query:    67 LQALLE----IAENQRTVPAFFACVLSPTRELAIQ---ISEQFEALGSGISL---RCAVL 116
             +   LE    +  ++R  P  +  ++ P+RELA Q   I E +  L    SL   RCA+ 
Sbjct:   236 IMFCLEQEKRLPFSKREGP--YGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALC 293

Query:   117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176
             +GG+ + +Q   +    H++VATPGRLMD L   K  SL   +YL LDEADR+++  FE 
Sbjct:   294 IGGMSVKEQMETIKHGVHMMVATPGRLMD-LLQKKMVSLDICRYLALDEADRMIDMGFEG 352

Query:   177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA-SKYSTVDTLKQQYRFV 235
              +  I +     RQT LFSATM KK++   ++ L  P+ I    +  +++D + Q+  +V
Sbjct:   353 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVV-QEVEYV 411

Query:   236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
               + K  YL+  L +      +   +  D   +   +L   G  A+ I G   Q +R  A
Sbjct:   412 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK-GVEAVAIHGGKDQEERTKA 470

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +  F+ G+ ++L+ TDVAS+GLD P++  VINYD+P   ++Y+H
Sbjct:   471 IEAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 514


>WB|WBGene00018007 [details] [associations]
            symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0009790 "embryo development"
            evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
            "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0018996 "molting
            cycle, collagen and cuticulin-based cuticle" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
            GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
            EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
            ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
            MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
            EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
            KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
            WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
        Length = 399

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 117/370 (31%), Positives = 196/370 (52%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             E   + TF ++GLR++L+      G++ PS IQ  A+P  L+ +D+I  AQ+G+GKT  F
Sbjct:    21 EVNVIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATF 80

Query:    63 ALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 121
             ++ +LQ+L  ++ E Q       A +LSPTRELA+QI +   ALG  ++++C   +GG +
Sbjct:    81 SISVLQSLDTQVRETQ-------ALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTN 133

Query:   122 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEI 181
             + +    L    H+V  TPGR+ D +   +      +K LVLDEAD +LN  F++ L +I
Sbjct:   134 LGEDIRKLDYGQHVVSGTPGRVFD-MIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDI 192

Query:   182 LNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YK 240
                +P   Q  L SAT+  ++ ++    + +P++I       T++ +KQ +  V  + +K
Sbjct:   193 YRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWK 252

Query:   241 DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK 300
                L+ +   ++ +  ++F  T      L   ++        + G M Q  R   + +F+
Sbjct:   253 FDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 312

Query:   301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQY 360
             AG   +LI TDV +RGLD+P V +VINYD+P N + YIH              I+ V Q 
Sbjct:   313 AGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 372

Query:   361 ELEWYLQIEK 370
             ++     IE+
Sbjct:   373 DVRILRDIEQ 382


>WB|WBGene00022029 [details] [associations]
            symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0018996 "molting cycle, collagen and
            cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
            cell development" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
            GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
            GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
            RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
            STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
            KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
            InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
        Length = 399

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 117/366 (31%), Positives = 195/366 (53%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             + TF ++GLR++L+      G++ PS IQ  AIP  L+ +D+I  AQ+G+GKT  F++ +
Sbjct:    25 IPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISV 84

Query:    67 LQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
             LQ+L  ++ E Q       A +LSPTRELA+QI +   ALG  ++++C   +GG ++ + 
Sbjct:    85 LQSLDTQVRETQ-------ALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGED 137

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                L    H+V  TPGR+ D +   +      +K LVLDEAD +LN  F++ L +I   +
Sbjct:   138 IRKLDYGQHVVSGTPGRVFD-MIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYL 196

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYL 244
             P   Q  L SAT+  ++ ++    + +P++I       T++ +KQ +  V  + +K   L
Sbjct:   197 PPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTL 256

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
             + +   ++ +  ++F  T      L   ++        + G M Q  R   + +F+AG  
Sbjct:   257 IDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTT 316

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEW 364
              +LI TDV +RGLD+P V +VINYD+P N + YIH              I+ V Q ++  
Sbjct:   317 RVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRI 376

Query:   365 YLQIEK 370
                IE+
Sbjct:   377 LRDIEQ 382


>POMBASE|SPBP8B7.16c [details] [associations]
            symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
            species:4896 "Schizosaccharomyces pombe" [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
            EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
            ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
            EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
            NextBio:20802492 Uniprot:P24782
        Length = 550

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 122/341 (35%), Positives = 190/341 (55%)

Query:     5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             K V TF+E G  + +++  + +G++ P+ IQ +A P A+ G+D++G++ TGSGKT ++ L
Sbjct:   119 KPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCL 178

Query:    65 PILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
             P   A++ I       P       VL+PTRELA+QI ++    G    +R   + GGV  
Sbjct:   179 P---AIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPR 235

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               Q   L +   I +ATPGRL+D L + K  +L  + YLVLDEADR+L+  FE  + +I+
Sbjct:   236 GPQIRDLIRGVEICIATPGRLLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIV 294

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS-KYSTVDTLKQQYRFVPAKYKD 241
             + I   RQT +FSAT  K+V++L R  L + +++   S   +    +KQ    V    K 
Sbjct:   295 DQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKR 354

Query:   242 CYLVYILTEVSA---SSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
               L   + EV     +  ++FT T      +   LR  G  A+ I G  +Q +R   LN+
Sbjct:   355 ARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNE 414

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             F+ G+  I++ TDVASRG+D+  +  V NYD P N++DY+H
Sbjct:   415 FRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVH 455


>UNIPROTKB|Q8EI96 [details] [associations]
            symbol:srmB "ATP-dependent RNA helicase SrmB"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
            HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
            RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
            KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
        Length = 420

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 125/365 (34%), Positives = 189/365 (51%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L   L+E+ + +G  +P+ IQ E +PHALE +D++  A TG+GKT +F LP LQ 
Sbjct:     3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L++    +R        +L+PTRELA QI      L +   L  A++ GGV    Q  AL
Sbjct:    63 LIDFP--RRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
                  I+VATPGRLM++L   K FS  ++  L++DEADR+L+  F   +  I       +
Sbjct:   121 KGNIDILVATPGRLMEYLDKGK-FSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRK 179

Query:   190 QTYLFSATMTKK-VKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYI 247
             Q  LFSAT+    V +  R  L +P++I+  +       + Q       K +K   L ++
Sbjct:   180 QNMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHL 239

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
             L +      +VF +T D    L   L   G     + G M Q KR  AL++F  GE N+L
Sbjct:   240 LKQEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVL 299

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             + TDVA+RG+DI  +  VIN+D+P ++  YIH              ISL   +++    +
Sbjct:   300 LATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359

Query:   368 IEKLI 372
             IE+ I
Sbjct:   360 IERYI 364


>TIGR_CMR|SO_0947 [details] [associations]
            symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
            HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
            RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
            KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
        Length = 420

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 125/365 (34%), Positives = 189/365 (51%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L   L+E+ + +G  +P+ IQ E +PHALE +D++  A TG+GKT +F LP LQ 
Sbjct:     3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             L++    +R        +L+PTRELA QI      L +   L  A++ GGV    Q  AL
Sbjct:    63 LIDFP--RRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
                  I+VATPGRLM++L   K FS  ++  L++DEADR+L+  F   +  I       +
Sbjct:   121 KGNIDILVATPGRLMEYLDKGK-FSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRK 179

Query:   190 QTYLFSATMTKK-VKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYI 247
             Q  LFSAT+    V +  R  L +P++I+  +       + Q       K +K   L ++
Sbjct:   180 QNMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHL 239

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
             L +      +VF +T D    L   L   G     + G M Q KR  AL++F  GE N+L
Sbjct:   240 LKQEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVL 299

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             + TDVA+RG+DI  +  VIN+D+P ++  YIH              ISL   +++    +
Sbjct:   300 LATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359

Query:   368 IEKLI 372
             IE+ I
Sbjct:   360 IERYI 364


>FB|FBgn0035720 [details] [associations]
            symbol:CG10077 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005875 "microtubule associated complex"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
            EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
            GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
            GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
            ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
            RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
            STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
            UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
        Length = 818

 Score = 501 (181.4 bits), Expect = 2.5e-47, P = 2.5e-47
 Identities = 129/336 (38%), Positives = 182/336 (54%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F+E G  D ++      G+  P+ IQA+  P A+ G+DL+G+AQTGSGKT A+ LP   A
Sbjct:   159 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLP---A 215

Query:    70 LLEIAENQRTVPAF--FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
             ++ I    R        A VL+PTRELA QI +     GS   +R   + GG    QQ  
Sbjct:   216 VVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQAR 275

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
              L +   IV+ATPGRL+D L      SL    YLVLDEADR+L+  FE  + +I+  I  
Sbjct:   276 DLERGVEIVIATPGRLIDFLERGTT-SLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRP 334

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS-KYSTVDTLKQQYRFVPAKYKDCYLVY 246
              RQ  ++SAT  K+V++L    L N +++   S   S    + Q         K   L+ 
Sbjct:   335 DRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIK 394

Query:   247 ILTEVSASS---TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303
             +LT++SA +   T++F  T      +   +   G RA  I G  SQ +R   L+ F+ G 
Sbjct:   395 LLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGR 454

Query:   304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              +IL+ TDVA+RGLD+  V  VINYD P+NS+DY+H
Sbjct:   455 HSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVH 490


>TAIR|locus:2050715 [details] [associations]
            symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
            "cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
            GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
            PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
            EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
            RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
            SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
            EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
            GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
            Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
        Length = 528

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 121/366 (33%), Positives = 194/366 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ +L+      G++ PS IQ E+IP AL G D++  A+ G+GKTGAF +P L+ 
Sbjct:   156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             +    EN        A +L PTRELA+Q S+  + L   + +   V  GG  +    + L
Sbjct:   216 I--DPENN----VIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRL 269

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
              +  H++V TPGR++D L   KG   L     LV+DEAD+LL+ +F+ S++E++  +P  
Sbjct:   270 YQPVHLLVGTPGRILD-LAK-KGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPES 327

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             RQ  +FSAT    VK  +   LK P  I    +  T+  + Q Y FV  + K   L  + 
Sbjct:   328 RQILMFSATFPVTVKSFKDRYLKKPYIINLMDQL-TLMGVTQYYAFVEERQKVHCLNTLF 386

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
             +++  + +++F  + +   LLA  +  LG     I   M Q  R    + F+ G C  L+
Sbjct:   387 SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLV 446

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL-Q 367
             CTD+ +RG+DI +V++VIN+D P  S+ Y+H              ++LV  YE  + + Q
Sbjct:   447 CTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVT-YEDRFKMYQ 505

Query:   368 IEKLIG 373
              E+ +G
Sbjct:   506 TEQELG 511


>FB|FBgn0036104 [details] [associations]
            symbol:CG6418 species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
            GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
            UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
            STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
            KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
            InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
            NextBio:812543 Uniprot:Q9VTC1
        Length = 791

 Score = 500 (181.1 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 119/364 (32%), Positives = 198/364 (54%)

Query:     5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             K V +F   G  ++L++A     +  P+ IQA+A+P AL G+D+IG+A+TGSGKT AF  
Sbjct:   266 KPVTSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIW 325

Query:    65 PILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124
             P+L  +++  +  +        +L+PTREL++QI  + +  G   +L      GG    +
Sbjct:   326 PMLMHVMD-QKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWE 384

Query:   125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
             Q+ AL +   I+VATPGR++D +   K  +L  + +LVLDEADR+ +  FE  +  I N 
Sbjct:   385 QSKALEQGAEIIVATPGRMID-MVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNH 443

Query:   185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKI-EAASKYSTVDTLKQQYRFV-PAKYKDC 242
             +   RQ  +FSAT  K++++L R  L +PV+I +     +  D  +  Y F  P +  + 
Sbjct:   444 VRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNW 503

Query:   243 YLVYILTEVSASSTMVF-TRTCDATRLLA-LMLRNLGQRAIPISGHMSQSKRLGALNKFK 300
              L +++  +S  S ++F T+  DA  +   L+++      + + G M Q+ R   + +FK
Sbjct:   504 LLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYN--CLLLHGDMDQADRNKVITQFK 561

Query:   301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQY 360
               EC+IL+ TDVA+RGLDIP +  V+NYD   + + + H               +LV   
Sbjct:   562 RKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDK 621

Query:   361 ELEW 364
             + E+
Sbjct:   622 DKEF 625


>UNIPROTKB|A4R715 [details] [associations]
            symbol:DHH1 "ATP-dependent RNA helicase DHH1"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
            GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
            InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
            GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
        Length = 535

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 118/365 (32%), Positives = 191/365 (52%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F+  GL+ +L+      G++ PS IQ E+IP AL G+D++  A+ G+GKT AF +P L+ 
Sbjct:    49 FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALET 108

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
             +     N + V      +L PTRELA+Q S+  + LG  + +   V  GG  +    L L
Sbjct:   109 I-----NPK-VSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTTLRDDILRL 162

Query:   130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
                 HIVV TPGR++D L       L      ++DEAD+LL+ +F   ++++L   P+ R
Sbjct:   163 QDPVHIVVGTPGRILD-LAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDR 221

Query:   190 QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT 249
             Q  LFSAT    VK+     + NP +I    +  T+  + Q Y FV  K K   L  + +
Sbjct:   222 QVMLFSATFPISVKEFSDKNMTNPYEINLMDEL-TLRGITQYYAFVEEKQKVHCLNTLFS 280

Query:   250 EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILIC 309
             ++  + +++F  + +   LLA  +  LG         M Q  R    + F+ G C  L+C
Sbjct:   281 KLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQQARNRVFHDFRNGVCRNLVC 340

Query:   310 TDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL-QI 368
             +D+ +RG+DI +V++VIN+D P N++ Y+H              I+L++ +E  + L  I
Sbjct:   341 SDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLIS-WEDRFNLYNI 399

Query:   369 EKLIG 373
             E+ +G
Sbjct:   400 ERDLG 404


>WB|WBGene00022378 [details] [associations]
            symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
            OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
            GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
            NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
            SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
            WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
            Uniprot:Q688Z4
        Length = 871

 Score = 501 (181.4 bits), Expect = 3.4e-47, P = 3.4e-47
 Identities = 125/376 (33%), Positives = 195/376 (51%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             + K+   ++++GL   + +A E  G+  P+ IQ + IP  ++GKD++ +++TGSGKT AF
Sbjct:    19 KHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAF 78

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
              +P+LQ L      +R      A ++SPTRELA+Q  +  + LG    LRCA LVGG  +
Sbjct:    79 VIPMLQKL-----KRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQI 133

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
              +Q   + + P I++ATPGRL+ H+       L  ++Y+V DEADRL    F+  L E L
Sbjct:   134 EEQFSTIHENPDILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETL 192

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYK 240
               IP  RQT LFSAT+ K +    +A L +P  V+++   K S  D L   +       K
Sbjct:   193 KRIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVS--DKLSMVFCMCRPDEK 250

Query:   241 DCYLVYILTEVSASS--TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
                L+++   +   +  T+VF  T      +  +L   G     +   +  + R   + K
Sbjct:   251 LFALLHLCRRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQK 310

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVN 358
             F   + NIL+ TDVA+RG+DIP +D VIN   P  +K ++H              ISL+ 
Sbjct:   311 FHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIA 370

Query:   359 QYELEWYLQIEKLIGK 374
               EL +   +   +GK
Sbjct:   371 NDELPYLTDLFMFLGK 386


>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
            symbol:PFC0915w "ATP-dependent RNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
            ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
            GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
            Uniprot:O97285
        Length = 433

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 118/366 (32%), Positives = 196/366 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ EL+      G++ PS IQ E+IP AL GK+++  A+ G+GKT AFA+P+L  
Sbjct:    62 FEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLL-- 119

Query:    70 LLEIAENQRTVPAFF-ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
                  E   T   F    +L PTRELA+Q S   + LG  + ++C V  GG  + +  + 
Sbjct:   120 -----EKCNTHKNFIQGLILVPTRELALQTSAMIKELGKHMKVQCMVTTGGTSLREDIMR 174

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L    HI+  TPGR++D L N    +L     +V+DEAD+LL+ +F+  ++E++  +P+ 
Sbjct:   175 LYNVVHILCGTPGRILD-LANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKE 233

Query:   189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
             +Q  ++SAT    VK+ +   L +  +I    +  T+  + Q Y FV  + K   L  + 
Sbjct:   234 KQILMYSATFPVTVKEFRAIYLSDAHEINLMDEL-TLKGITQYYAFVKERQKVHCLNTLF 292

Query:   249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
              ++  +  ++F  +     LLA  +  LG  +  I   MSQ+ R    + F+ G C  L+
Sbjct:   293 AKLQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLV 352

Query:   309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL-Q 367
              +D+ +RG+DI SV++VIN+D P NS+ Y+H              I+L+  +E  + L +
Sbjct:   353 SSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLIT-FEDRFNLYK 411

Query:   368 IEKLIG 373
             IE  +G
Sbjct:   412 IEVELG 417


>UNIPROTKB|Q5ZM36 [details] [associations]
            symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
            "nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
            GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
            OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
            RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
            SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
            InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
        Length = 412

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 113/372 (30%), Positives = 197/372 (52%)

Query:     2 AEEKEVK-TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
             +EE +V  TF  +GLR++L+      G++ PS IQ  AI   ++G+D+I  +Q+G+GKT 
Sbjct:    32 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA 91

Query:    61 AFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
              F++ +LQ L +++ E Q       A +L+PTRELA+QI +   ALG  ++++C   +GG
Sbjct:    92 TFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGG 144

Query:   120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
              ++ +    L    H+V  TPGR+ D +   +      +K LVLDEAD +LN  F++ + 
Sbjct:   145 TNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY 203

Query:   180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK- 238
             ++   +P   Q  L SAT+  ++ ++    + +P++I       T++ +KQ +  V  + 
Sbjct:   204 DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 263

Query:   239 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
             +K   L  +   ++ +  ++F  T      L   +R        + G M Q +R   + +
Sbjct:   264 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 323

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVN 358
             F++G   +LI TDV +RGLD+P V ++INYD+P N + YIH              I+ V 
Sbjct:   324 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 383

Query:   359 QYELEWYLQIEK 370
               ++     IE+
Sbjct:   384 NDDIRILRDIEQ 395


>UNIPROTKB|Q2NL22 [details] [associations]
            symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
            species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0045727 "positive regulation of translation"
            evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA] [GO:0017148 "negative regulation of translation"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
            GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
            GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
            GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
            GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
            IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
            ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
            Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
            InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
            Uniprot:Q2NL22
        Length = 411

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 113/372 (30%), Positives = 197/372 (52%)

Query:     2 AEEKEVK-TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
             +EE +V  TF  +GLR++L+      G++ PS IQ  AI   ++G+D+I  +Q+G+GKT 
Sbjct:    31 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA 90

Query:    61 AFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
              F++ +LQ L +++ E Q       A +L+PTRELA+QI +   ALG  ++++C   +GG
Sbjct:    91 TFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGG 143

Query:   120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
              ++ +    L    H+V  TPGR+ D +   +      +K LVLDEAD +LN  F++ + 
Sbjct:   144 TNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY 202

Query:   180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK- 238
             ++   +P   Q  L SAT+  ++ ++    + +P++I       T++ +KQ +  V  + 
Sbjct:   203 DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 262

Query:   239 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
             +K   L  +   ++ +  ++F  T      L   +R        + G M Q +R   + +
Sbjct:   263 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVN 358
             F++G   +LI TDV +RGLD+P V ++INYD+P N + YIH              I+ V 
Sbjct:   323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382

Query:   359 QYELEWYLQIEK 370
               ++     IE+
Sbjct:   383 NDDIRILRDIEQ 394


>UNIPROTKB|E2RDZ4 [details] [associations]
            symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
            "negative regulation of translation" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
            GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
            EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
            GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
        Length = 411

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 113/372 (30%), Positives = 197/372 (52%)

Query:     2 AEEKEVK-TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
             +EE +V  TF  +GLR++L+      G++ PS IQ  AI   ++G+D+I  +Q+G+GKT 
Sbjct:    31 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA 90

Query:    61 AFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
              F++ +LQ L +++ E Q       A +L+PTRELA+QI +   ALG  ++++C   +GG
Sbjct:    91 TFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGG 143

Query:   120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
              ++ +    L    H+V  TPGR+ D +   +      +K LVLDEAD +LN  F++ + 
Sbjct:   144 TNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY 202

Query:   180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK- 238
             ++   +P   Q  L SAT+  ++ ++    + +P++I       T++ +KQ +  V  + 
Sbjct:   203 DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 262

Query:   239 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
             +K   L  +   ++ +  ++F  T      L   +R        + G M Q +R   + +
Sbjct:   263 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVN 358
             F++G   +LI TDV +RGLD+P V ++INYD+P N + YIH              I+ V 
Sbjct:   323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382

Query:   359 QYELEWYLQIEK 370
               ++     IE+
Sbjct:   383 NDDIRILRDIEQ 394


>UNIPROTKB|P38919 [details] [associations]
            symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
            species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0048026 "positive
            regulation of mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
            of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
            evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
            regulation of translation" evidence=IDA] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0000289
            "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
            "cytokine-mediated signaling pathway" evidence=TAS]
            Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
            GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
            GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
            GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
            PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
            PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
            OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
            EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
            EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
            UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
            SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
            STRING:P38919 PhosphoSite:P38919 DMDM:20532400
            REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
            PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
            KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
            HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
            InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
            EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
            CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
            Uniprot:P38919
        Length = 411

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 113/372 (30%), Positives = 197/372 (52%)

Query:     2 AEEKEVK-TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
             +EE +V  TF  +GLR++L+      G++ PS IQ  AI   ++G+D+I  +Q+G+GKT 
Sbjct:    31 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA 90

Query:    61 AFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
              F++ +LQ L +++ E Q       A +L+PTRELA+QI +   ALG  ++++C   +GG
Sbjct:    91 TFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGG 143

Query:   120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
              ++ +    L    H+V  TPGR+ D +   +      +K LVLDEAD +LN  F++ + 
Sbjct:   144 TNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY 202

Query:   180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK- 238
             ++   +P   Q  L SAT+  ++ ++    + +P++I       T++ +KQ +  V  + 
Sbjct:   203 DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 262

Query:   239 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
             +K   L  +   ++ +  ++F  T      L   +R        + G M Q +R   + +
Sbjct:   263 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVN 358
             F++G   +LI TDV +RGLD+P V ++INYD+P N + YIH              I+ V 
Sbjct:   323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382

Query:   359 QYELEWYLQIEK 370
               ++     IE+
Sbjct:   383 NDDIRILRDIEQ 394


>UNIPROTKB|A6M931 [details] [associations]
            symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
            species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
            "regulation of translation" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
            GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
            GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
            OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
            UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
            GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
        Length = 411

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 113/372 (30%), Positives = 197/372 (52%)

Query:     2 AEEKEVK-TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
             +EE +V  TF  +GLR++L+      G++ PS IQ  AI   ++G+D+I  +Q+G+GKT 
Sbjct:    31 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA 90

Query:    61 AFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
              F++ +LQ L +++ E Q       A +L+PTRELA+QI +   ALG  ++++C   +GG
Sbjct:    91 TFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGG 143

Query:   120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
              ++ +    L    H+V  TPGR+ D +   +      +K LVLDEAD +LN  F++ + 
Sbjct:   144 TNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY 202

Query:   180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK- 238
             ++   +P   Q  L SAT+  ++ ++    + +P++I       T++ +KQ +  V  + 
Sbjct:   203 DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 262

Query:   239 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
             +K   L  +   ++ +  ++F  T      L   +R        + G M Q +R   + +
Sbjct:   263 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVN 358
             F++G   +LI TDV +RGLD+P V ++INYD+P N + YIH              I+ V 
Sbjct:   323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382

Query:   359 QYELEWYLQIEK 370
               ++     IE+
Sbjct:   383 NDDIRILRDIEQ 394


>RGD|1591139 [details] [associations]
            symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
            isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
            GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
            EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
            IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
            ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
            KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
        Length = 411

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 113/372 (30%), Positives = 197/372 (52%)

Query:     2 AEEKEVK-TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
             +EE +V  TF  +GLR++L+      G++ PS IQ  AI   ++G+D+I  +Q+G+GKT 
Sbjct:    31 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA 90

Query:    61 AFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
              F++ +LQ L +++ E Q       A +L+PTRELA+QI +   ALG  ++++C   +GG
Sbjct:    91 TFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGG 143

Query:   120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
              ++ +    L    H+V  TPGR+ D +   +      +K LVLDEAD +LN  F++ + 
Sbjct:   144 TNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY 202

Query:   180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK- 238
             ++   +P   Q  L SAT+  ++ ++    + +P++I       T++ +KQ +  V  + 
Sbjct:   203 DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 262

Query:   239 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
             +K   L  +   ++ +  ++F  T      L   +R        + G M Q +R   + +
Sbjct:   263 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVN 358
             F++G   +LI TDV +RGLD+P V ++INYD+P N + YIH              I+ V 
Sbjct:   323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382

Query:   359 QYELEWYLQIEK 370
               ++     IE+
Sbjct:   383 NDDIRILRDIEQ 394


>ZFIN|ZDB-GENE-021220-2 [details] [associations]
            symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
            HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
            HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
            EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
            STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
            GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
        Length = 862

 Score = 500 (181.1 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 126/374 (33%), Positives = 194/374 (51%)

Query:     3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
             ++K+   F+ +GL   + +     G+K P+ IQ + IP  L+GKD++ +A+TGSGKT AF
Sbjct:    73 KKKKSGGFQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAF 132

Query:    63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
              +P+ + L   A   +T     A +L+PTRELA+Q  +  + LG    LR A+++GG  M
Sbjct:   133 LVPLFEKLK--APQAQTGAR--ALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSM 188

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               Q  AL + P I++ TPGRLM H+       L +++Y+V DEADRL    F + L EI+
Sbjct:   189 DDQFAALHENPDIIIGTPGRLM-HVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 247

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242
               +P  RQT LFSAT+ K + +  RA L  PV I         + LK  +  +    K  
Sbjct:   248 RRLPDARQTLLFSATLPKLIVEFARAGLTEPVLIRLDVDTKLSEQLKLSFFSLRLDDKPA 307

Query:   243 YLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK 300
              L+++L  V      T+VF  T      L  +L   G     I   + Q+ R  ++ +F 
Sbjct:   308 LLLHLLRNVVKPQEQTVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARKISIGRFV 367

Query:   301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQY 360
               +  +L+ TDVA+RG+DIP +D VINY+ P   K ++H               SLV   
Sbjct:   368 HRKVMLLLVTDVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSLVCPD 427

Query:   361 ELEWYLQIEKLIGK 374
             E+ +   +   +G+
Sbjct:   428 EVPYLYDLHLFLGR 441


>CGD|CAL0006152 [details] [associations]
            symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
            mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
            in response to nitrogen starvation" evidence=IEA] [GO:0034063
            "stress granule assembly" evidence=IEA] [GO:0000753 "cell
            morphogenesis involved in conjugation with cellular fusion"
            evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
            decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
            "induction of conjugation upon nitrogen starvation" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
            GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
            GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
            KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
            RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
            GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
            KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
        Length = 549

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 118/366 (32%), Positives = 193/366 (52%)

Query:     8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL 67
             K+F++  L+ EL+      G++ PS IQ E+IP AL G+D++  A+ G+GKT +F +P L
Sbjct:    30 KSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCL 89

Query:    68 QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
             Q L++   N+  V A    +L PTRELA+Q S+    LG  +  +C V  GG  +    +
Sbjct:    90 Q-LVKPKLNK--VQAL---ILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIV 143

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
              L    HI+V TPGR++D L   K   L      V+DEAD++L+ +F+  +++IL   P 
Sbjct:   144 RLHDPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPP 202

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQ  LFSAT    VK      L  P +I    +  T+  + Q Y FV  K K   L  +
Sbjct:   203 NRQALLFSATFPLAVKSFMDKHLTKPYEINLMDEL-TLKGISQFYAFVEEKQKLHCLNTL 261

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
              +++  + +++F  + +   LLA  +  LG         M Q  R    ++F+ G+   L
Sbjct:   262 FSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNL 321

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             +C+D+ +RG+DI +V++VIN+D P  ++ Y+H              I+L++  +     +
Sbjct:   322 VCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYK 381

Query:   368 IEKLIG 373
             IE+ +G
Sbjct:   382 IEQELG 387


>UNIPROTKB|Q5AAW3 [details] [associations]
            symbol:DHH1 "ATP-dependent RNA helicase DHH1"
            species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
            GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
            GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
            eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
            SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
            KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
        Length = 549

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 118/366 (32%), Positives = 193/366 (52%)

Query:     8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPIL 67
             K+F++  L+ EL+      G++ PS IQ E+IP AL G+D++  A+ G+GKT +F +P L
Sbjct:    30 KSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCL 89

Query:    68 QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
             Q L++   N+  V A    +L PTRELA+Q S+    LG  +  +C V  GG  +    +
Sbjct:    90 Q-LVKPKLNK--VQAL---ILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIV 143

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
              L    HI+V TPGR++D L   K   L      V+DEAD++L+ +F+  +++IL   P 
Sbjct:   144 RLHDPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPP 202

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQ  LFSAT    VK      L  P +I    +  T+  + Q Y FV  K K   L  +
Sbjct:   203 NRQALLFSATFPLAVKSFMDKHLTKPYEINLMDEL-TLKGISQFYAFVEEKQKLHCLNTL 261

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
              +++  + +++F  + +   LLA  +  LG         M Q  R    ++F+ G+   L
Sbjct:   262 FSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNL 321

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             +C+D+ +RG+DI +V++VIN+D P  ++ Y+H              I+L++  +     +
Sbjct:   322 VCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYK 381

Query:   368 IEKLIG 373
             IE+ +G
Sbjct:   382 IEQELG 387


>TIGR_CMR|VC_2564 [details] [associations]
            symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
            KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
            DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
            Uniprot:Q9KP15
        Length = 460

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 119/332 (35%), Positives = 187/332 (56%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F  L L+ EL+   E +G+ T + IQA+++P  L+G+D+IG  +TGSGKT AF L +L 
Sbjct:     5 SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTL 127
              L     N +      A VL PTRELA Q++     LG  I +++   L GG+ M  Q  
Sbjct:    65 NL-----NVKRFRVQ-ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIG 118

Query:   128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             +L    HI+V TPGR++DHL+  +   L  L  LVLDEADR+L   F+++L+ I+   P 
Sbjct:   119 SLEHGAHILVGTPGRILDHLSKDR-IDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPA 177

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQT LFSAT    ++++ ++  +N + I+  + + T    +  Y+   +  +D  L  +
Sbjct:   178 ERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETL 237

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
             L     +S++VF  T    + +A  L   G   I + G M Q +R  AL +F     +IL
Sbjct:   238 LLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISIL 297

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             + TDVA+RGLD+ ++D V NYD+  + + ++H
Sbjct:   298 VATDVAARGLDVDNLDAVFNYDLSRDPEVHVH 329


>SGD|S000003046 [details] [associations]
            symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
            family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
            subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
            "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
            EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
            ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
            MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
            EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
            KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
            KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
            GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
        Length = 523

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 122/339 (35%), Positives = 187/339 (55%)

Query:     9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
             +F  L L D  ++A E   +  P+ IQA A P+ L GKD++G+A+TGSGKT AF +P + 
Sbjct:   115 SFDYLSL-DSSIQA-EISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAIS 172

Query:    69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
              L+   + +R +      V+SPTRELA QI +    L   + ++C  + GGV   +Q + 
Sbjct:   173 HLMN-DQKKRGIQVL---VISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQ 228

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
             L K+  +VVATPGRL+D L       L  + YLVLDEADR+L   FE+ +  I+      
Sbjct:   229 L-KKSQVVVATPGRLLD-LLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDAS 286

Query:   189 -RQTYLFSATMTKKVKKLQRACLKNPVKIEAAS--KYSTVDTLKQQYRFVPAKYKDCYLV 245
              RQT +F+AT  K+V++L    + NP+K+   +  + +    + Q    V  + K+  L+
Sbjct:   287 KRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLL 346

Query:   246 YILTEVSAS-----STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK 300
              +L +  +        ++F         +   L+  G     I G +SQ +R  ALN+FK
Sbjct:   347 ELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFK 406

Query:   301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +G+ N+L+ TDVA+RGLDIP+V  VIN   P   +DY+H
Sbjct:   407 SGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVH 445


>TAIR|locus:2065215 [details] [associations]
            symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
            HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
            IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
            ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
            PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
            KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
            OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
            Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
        Length = 760

 Score = 495 (179.3 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 121/339 (35%), Positives = 187/339 (55%)

Query:     5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             + VKTF++ G   +++ A +   ++ P+ IQ +A+P  L G+D+IG+A+TGSGKT AF L
Sbjct:   225 RPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVL 284

Query:    65 PILQALLEIAENQRTV-PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123
             P++  +++  E QR   P    C  +PTRELA QI  + +       LR + + GG+   
Sbjct:   285 PMIVHIMDQPELQRDEGPIGVIC--APTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKH 342

Query:   124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
             +Q   L     IVVATPGRL+D L   K  ++    YLVLDEADR+ +  FE  +  I+ 
Sbjct:   343 EQFKELKAGCEIVVATPGRLIDML-KMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVG 401

Query:   184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC- 242
              I   RQT LFSATM  KV+KL R  L +P+++         + + Q    +P+  +   
Sbjct:   402 QIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLP 461

Query:   243 YLVYILTE-VSASSTMVF-TRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK 300
             +L+  L   +     +VF ++      + A +  N   +   + G   Q+ R+  L KFK
Sbjct:   462 WLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLN-SFKVAALHGDKDQASRMETLQKFK 520

Query:   301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +G  ++LI TDVA+RGLDI S+  V+NYDI  +   ++H
Sbjct:   521 SGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVH 559


>CGD|CAL0005460 [details] [associations]
            symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
            ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
            "RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
            EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
            ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
            GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
            Uniprot:Q5APT8
        Length = 564

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 120/318 (37%), Positives = 184/318 (57%)

Query:    31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90
             P+ IQ+ + P  L GKD+IG+A+TGSGKT AF +P +  ++    N +T+     C+ SP
Sbjct:   176 PTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNIITTG-NTKTLSVL--CI-SP 231

Query:    91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT 150
             TRELA+QI +    L +   + C  + GGV    Q   + K  ++VVATPGRL+D L N 
Sbjct:   232 TRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKI-KTANVVVATPGRLVD-LIND 289

Query:   151 KGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL-NVIPRMRQTYLFSATMTKKVKKLQRAC 209
                +LG + YLVLDEADR+L   FE+ +  I+ N     RQT +F+AT  K+V++L    
Sbjct:   290 GAINLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNF 349

Query:   210 LKNPVKIEAASK--YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASST-----MVFTR- 261
             + +PVK+    +   S    + Q    +    K+  L+ +L + +A+ +     ++F   
Sbjct:   350 MNSPVKVTVGDRDELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALY 409

Query:   262 TCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321
               +A+R+   + RN    A  I G +SQ +R  AL+ FK+G+ N+L+ TDVA+RGLDIP+
Sbjct:   410 KKEASRIENFLKRNRFSVAA-IHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPN 468

Query:   322 VDMVINYDIPTNSKDYIH 339
             V +VIN   P   +DY+H
Sbjct:   469 VKVVINLTFPLTIEDYVH 486


>CGD|CAL0004095 [details] [associations]
            symbol:TIF species:5476 "Candida albicans" [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0006413
            "translational initiation" evidence=ISS] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0016281 "eukaryotic translation initiation factor 4F complex"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
            EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
            ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
            GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
            Uniprot:P87206
        Length = 397

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 119/366 (32%), Positives = 185/366 (50%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             V  F +L L+  +V      G++TPS IQ  AI    EG+D++  AQ+G+GKT  F +  
Sbjct:    22 VYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISA 81

Query:    67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
             LQ    I EN++   A    +L+PTRELA+QI     A+G  + +     +GG  M    
Sbjct:    82 LQ---RINENEKATQAL---ILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDI 135

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
              A      IVV TPGR++D +   + F    +K  +LDEAD +L+  F++ +  I  ++P
Sbjct:   136 EAFRSGVQIVVGTPGRVLD-MIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLP 194

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YK-DCYL 244
                Q  L SATM + V ++    + NPV+I       T++ +KQ Y  V  + YK DC L
Sbjct:   195 ETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDC-L 253

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
               +   +S +  ++F  T      L   LR        I   + Q++R   + +F++G  
Sbjct:   254 CDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSS 313

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEW 364
              ILI TD+ +RG+D+  V +VINYD+P N ++YIH              I+ V   ++  
Sbjct:   314 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGM 373

Query:   365 YLQIEK 370
               +IEK
Sbjct:   374 MREIEK 379


>UNIPROTKB|E1BDM8 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
            EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
            UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
            GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
        Length = 483

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 115/367 (31%), Positives = 202/367 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ EL+     +GW+ PS IQ E+IP AL G+D++  A+ G+GK+GA+ +P+L+ 
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTLA 128
             L    +N +      A V+ PTRELA+Q+S+    +   +   +     GG ++    + 
Sbjct:   158 LDLKKDNIQ------AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             L    H+V+ATPGR++D +   KG + +  ++ +VLDEAD+LL+ DF + +++I+  +P+
Sbjct:   212 LDDTVHVVIATPGRILDLIK--KGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQ  L+SAT    V+K   + L+ P +I    +  T+  + Q Y +V  + K   L  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEINLMEEL-TLKGVTQYYAYVTERQKVHCLNTL 328

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
              + +  + +++F  +     LLA  +  LG     I   M Q  R    + F+ G C  L
Sbjct:   329 FSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNL 388

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             +CTD+ +RG+DI +V++VIN+D P  ++ Y+H              I+L+  Y+  + L+
Sbjct:   389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT-YDDRFNLK 447

Query:   368 -IEKLIG 373
              IE+ +G
Sbjct:   448 SIEEQLG 454


>UNIPROTKB|E2RR01 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
            RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
            KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
        Length = 483

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 115/367 (31%), Positives = 202/367 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ EL+     +GW+ PS IQ E+IP AL G+D++  A+ G+GK+GA+ +P+L+ 
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTLA 128
             L    +N +      A V+ PTRELA+Q+S+    +   +   +     GG ++    + 
Sbjct:   158 LDLKKDNIQ------AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             L    H+V+ATPGR++D +   KG + +  ++ +VLDEAD+LL+ DF + +++I+  +P+
Sbjct:   212 LDDTVHVVIATPGRILDLIK--KGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQ  L+SAT    V+K   + L+ P +I    +  T+  + Q Y +V  + K   L  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEINLMEEL-TLKGVTQYYAYVTERQKVHCLNTL 328

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
              + +  + +++F  +     LLA  +  LG     I   M Q  R    + F+ G C  L
Sbjct:   329 FSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNL 388

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             +CTD+ +RG+DI +V++VIN+D P  ++ Y+H              I+L+  Y+  + L+
Sbjct:   389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT-YDDRFNLK 447

Query:   368 -IEKLIG 373
              IE+ +G
Sbjct:   448 SIEEQLG 454


>UNIPROTKB|P26196 [details] [associations]
            symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
            [GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
            "RNA-induced silencing complex" evidence=IDA] [GO:0033962
            "cytoplasmic mRNA processing body assembly" evidence=IDA]
            [GO:0000288 "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
            nuclear-transcribed mRNA catabolic process involved in
            deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
            Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
            GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
            GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
            EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
            RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
            PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
            ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
            STRING:P26196 PhosphoSite:P26196 DMDM:116241327
            DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
            PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
            Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
            KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
            HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
            neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
            PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
            GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
            CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
            Uniprot:P26196
        Length = 483

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 115/367 (31%), Positives = 202/367 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ EL+     +GW+ PS IQ E+IP AL G+D++  A+ G+GK+GA+ +P+L+ 
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTLA 128
             L    +N +      A V+ PTRELA+Q+S+    +   +   +     GG ++    + 
Sbjct:   158 LDLKKDNIQ------AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             L    H+V+ATPGR++D +   KG + +  ++ +VLDEAD+LL+ DF + +++I+  +P+
Sbjct:   212 LDDTVHVVIATPGRILDLIK--KGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQ  L+SAT    V+K   + L+ P +I    +  T+  + Q Y +V  + K   L  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEINLMEEL-TLKGVTQYYAYVTERQKVHCLNTL 328

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
              + +  + +++F  +     LLA  +  LG     I   M Q  R    + F+ G C  L
Sbjct:   329 FSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNL 388

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             +CTD+ +RG+DI +V++VIN+D P  ++ Y+H              I+L+  Y+  + L+
Sbjct:   389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT-YDDRFNLK 447

Query:   368 -IEKLIG 373
              IE+ +G
Sbjct:   448 SIEEQLG 454


>UNIPROTKB|F1SAJ5 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
            RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
            Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
            Uniprot:F1SAJ5
        Length = 483

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 115/367 (31%), Positives = 202/367 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ EL+     +GW+ PS IQ E+IP AL G+D++  A+ G+GK+GA+ +P+L+ 
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTLA 128
             L    +N +      A V+ PTRELA+Q+S+    +   +   +     GG ++    + 
Sbjct:   158 LDLKKDNIQ------AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             L    H+V+ATPGR++D +   KG + +  ++ +VLDEAD+LL+ DF + +++I+  +P+
Sbjct:   212 LDDTVHVVIATPGRILDLIK--KGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQ  L+SAT    V+K   + L+ P +I    +  T+  + Q Y +V  + K   L  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEINLMEEL-TLKGVTQYYAYVTERQKVHCLNTL 328

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
              + +  + +++F  +     LLA  +  LG     I   M Q  R    + F+ G C  L
Sbjct:   329 FSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNL 388

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             +CTD+ +RG+DI +V++VIN+D P  ++ Y+H              I+L+  Y+  + L+
Sbjct:   389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT-YDDRFNLK 447

Query:   368 -IEKLIG 373
              IE+ +G
Sbjct:   448 SIEEQLG 454


>UNIPROTKB|P87206 [details] [associations]
            symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
            species:237561 "Candida albicans SC5314" [GO:0003743 "translation
            initiation factor activity" evidence=ISS] [GO:0006413
            "translational initiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
            GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
            EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
            ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
            GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
            Uniprot:P87206
        Length = 397

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 119/366 (32%), Positives = 185/366 (50%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             V  F +L L+  +V      G++TPS IQ  AI    EG+D++  AQ+G+GKT  F +  
Sbjct:    22 VYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISA 81

Query:    67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126
             LQ    I EN++   A    +L+PTRELA+QI     A+G  + +     +GG  M    
Sbjct:    82 LQ---RINENEKATQAL---ILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDI 135

Query:   127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186
              A      IVV TPGR++D +   + F    +K  +LDEAD +L+  F++ +  I  ++P
Sbjct:   136 EAFRSGVQIVVGTPGRVLD-MIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLP 194

Query:   187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YK-DCYL 244
                Q  L SATM + V ++    + NPV+I       T++ +KQ Y  V  + YK DC L
Sbjct:   195 ETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDC-L 253

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
               +   +S +  ++F  T      L   LR        I   + Q++R   + +F++G  
Sbjct:   254 CDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSS 313

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEW 364
              ILI TD+ +RG+D+  V +VINYD+P N ++YIH              I+ V   ++  
Sbjct:   314 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGM 373

Query:   365 YLQIEK 370
               +IEK
Sbjct:   374 MREIEK 379


>MGI|MGI:104976 [details] [associations]
            symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
            evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
            GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
            HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
            PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
            EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
            IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
            RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
            SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
            PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
            KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
            Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
            GermOnline:ENSMUSG00000032097 Uniprot:P54823
        Length = 483

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 115/367 (31%), Positives = 202/367 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ EL+     +GW+ PS IQ E+IP AL G+D++  A+ G+GK+GA+ +P+L+ 
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTLA 128
             L    +N +      A V+ PTRELA+Q+S+    +   +   +     GG ++    + 
Sbjct:   158 LDLKKDNIQ------AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             L    H+V+ATPGR++D +   KG + +  ++ +VLDEAD+LL+ DF + +++I+  +P+
Sbjct:   212 LDDTVHVVIATPGRILDLIK--KGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQ  L+SAT    V+K   + L+ P +I    +  T+  + Q Y +V  + K   L  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEINLMEEL-TLKGVTQYYAYVTERQKVHCLNTL 328

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
              + +  + +++F  +     LLA  +  LG     I   M Q  R    + F+ G C  L
Sbjct:   329 FSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNL 388

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             +CTD+ +RG+DI +V++VIN+D P  ++ Y+H              I+L+  Y+  + L+
Sbjct:   389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT-YDDRFNLK 447

Query:   368 -IEKLIG 373
              IE+ +G
Sbjct:   448 SIEEQLG 454


>RGD|1564560 [details] [associations]
            symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
            species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
            processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
            complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
            body assembly" evidence=IEA;ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
            GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
            IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
            Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
            UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
        Length = 483

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 115/367 (31%), Positives = 202/367 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ EL+     +GW+ PS IQ E+IP AL G+D++  A+ G+GK+GA+ +P+L+ 
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTLA 128
             L    +N +      A V+ PTRELA+Q+S+    +   +   +     GG ++    + 
Sbjct:   158 LDLKKDNIQ------AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             L    H+V+ATPGR++D +   KG + +  ++ +VLDEAD+LL+ DF + +++I+  +P+
Sbjct:   212 LDDTVHVVIATPGRILDLIK--KGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQ  L+SAT    V+K   + L+ P +I    +  T+  + Q Y +V  + K   L  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEINLMEEL-TLKGVTQYYAYVTERQKVHCLNTL 328

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
              + +  + +++F  +     LLA  +  LG     I   M Q  R    + F+ G C  L
Sbjct:   329 FSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNL 388

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             +CTD+ +RG+DI +V++VIN+D P  ++ Y+H              I+L+  Y+  + L+
Sbjct:   389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT-YDDRFNLK 447

Query:   368 -IEKLIG 373
              IE+ +G
Sbjct:   448 SIEEQLG 454


>SGD|S000005056 [details] [associations]
            symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
            protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
            "nuclear polyadenylation-dependent mRNA catabolic process"
            evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
            ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
            "rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
            OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
            RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
            SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
            STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
            GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
            CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
            Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
        Length = 546

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 124/361 (34%), Positives = 189/361 (52%)

Query:     5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             K + TF E G  D ++   +  G+  P+ IQ +  P AL G+D++G+A TGSGKT ++ L
Sbjct:   110 KPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCL 169

Query:    65 PILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
             P    ++ I       P       VL+PTRELA+QI  +    G    +R   + GGV  
Sbjct:   170 P---GIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPK 226

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
              QQ   L +   IV+ATPGRL+D L   K  +L  + YLVLDEADR+L+  FE  + +I+
Sbjct:   227 SQQIRDLSRGSEIVIATPGRLIDMLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRKIV 285

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS-KYSTVDTLKQQYRFVPA-KYK 240
             + I   RQT ++SAT  K+VK+L    L +P++++  S + S    + Q    V   + +
Sbjct:   286 DQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKR 345

Query:   241 DCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
             D    Y+ T  + +   T++F  T      +   LR  G  A+ I G   Q +R   L +
Sbjct:   346 DRLNKYLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQE 405

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVN 358
             F+ G   I++ TDVA+RG+D+  ++ VINYD+P N +DY+H              IS   
Sbjct:   406 FRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFT 465

Query:   359 Q 359
             +
Sbjct:   466 E 466


>TAIR|locus:504955106 [details] [associations]
            symbol:emb1138 "embryo defective 1138" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
            "chloroplast envelope" evidence=IDA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
            GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
            SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
            EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
            EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
            EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
            IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
            RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
            SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
            EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
            GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
            PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
            Uniprot:Q8L7S8
        Length = 748

 Score = 493 (178.6 bits), Expect = 1.0e-46, P = 1.0e-46
 Identities = 128/348 (36%), Positives = 197/348 (56%)

Query:     2 AEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61
             A++ E     +L L   L E+ E  G      IQ   +  AL+G+D+I  A+TG+GKT A
Sbjct:    96 ADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLA 155

Query:    62 FALPILQALLEIAEN----QRT--VPAFFACVLSPTRELAIQISEQFEALGSGISLRCAV 115
             F +PI++ L E A +    +R+  +P F   VL+PTRELA Q+ ++ +     +S  C  
Sbjct:   156 FGIPIIKRLTEEAGDYTAFRRSGRLPKFL--VLAPTRELAKQVEKEIKESAPYLSTVC-- 211

Query:   116 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE 175
             + GGV    Q  AL +   +VV TPGR++D L   +   LG ++YLVLDEAD++L   FE
Sbjct:   212 VYGGVSYTIQQSALTRGVDVVVGTPGRIID-LIEGRSLKLGEVEYLVLDEADQMLAVGFE 270

Query:   176 KSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST--VDTLKQQYR 233
             ++++ IL  +P  RQ+ LFSATM   VKKL R  L NP+ I+          + +K    
Sbjct:   271 EAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAI 330

Query:   234 FVPAKYKDCYLVYILTEVS-ASSTMVFTRTC-DATRLLALMLRNLGQRAIPISGHMSQSK 291
                +  K   L  ++T  +    T+VFT+T  DA  +   +  ++   A+   G +SQ +
Sbjct:   331 ATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEAL--HGDISQHQ 388

Query:   292 RLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             R   LN F+ G+  +L+ TDVASRGLDIP+VD+VI+Y++P + + ++H
Sbjct:   389 RERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVH 436


>FB|FBgn0015331 [details] [associations]
            symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
            "establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
            system development" evidence=NAS] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
            evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
            GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
            EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
            ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
            MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
            EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
            UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
            OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
            NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
        Length = 619

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 124/383 (32%), Positives = 201/383 (52%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             +++F+E+     ++      G K P+ IQ + +P  L G+DLIG+A TGSGKT  F LP+
Sbjct:   176 IRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPV 235

Query:    67 LQALLE----IAENQRTVPAFFACVLSPTRELAIQI-------SEQFEALGSGISLRCAV 115
             +   LE    +   +   P  +  ++ P+RELA Q        S+  +A G    +R  +
Sbjct:   236 IMFALEQEYSLPFERNEGP--YGLIICPSRELAKQTHEIIQHYSKHLQACGMP-EIRSCL 292

Query:   116 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE 175
              +GG+ + +    + +  HIVVATPGRLMD L + K  +L   +YL +DEADR+++  FE
Sbjct:   293 AMGGLPVSEALDVISRGVHIVVATPGRLMDML-DKKILTLDMCRYLCMDEADRMIDMGFE 351

Query:   176 KSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFV 235
             + +  I +     RQT LFSATM KK++   R+ L  PV I      +    + QQ  +V
Sbjct:   352 EDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYV 411

Query:   236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295
               + K  YL+  L + +A   ++F         +   L   G  A+ I G   Q +R  A
Sbjct:   412 KQEAKVVYLLDCLQK-TAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRA 470

Query:   296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXIS 355
             ++ ++ G+ ++L+ TDVAS+GLD P+V  VINYD+P + ++Y+H               +
Sbjct:   471 VDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATT 530

Query:   356 LVNQY-ELEWYLQIEKLI--GKK 375
             L+N+  E    L ++ L+  GK+
Sbjct:   531 LINKTTEQSVLLDLKHLLIEGKQ 553


>UNIPROTKB|Q5ZKB9 [details] [associations]
            symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
            mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
            eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
            OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
            EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
            ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
            HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
            ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
        Length = 483

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 115/367 (31%), Positives = 202/367 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ EL+     +GW+ PS IQ E+IP AL G+D++  A+ G+GK+GA+ +P+L+ 
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTLA 128
             L    +N +      A V+ PTRELA+Q+S+    +   +   +     GG ++    + 
Sbjct:   158 LDLKKDNIQ------AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             L    H+V+ATPGR++D +   KG + +  ++ +VLDEAD+LL+ DF + +++I+  +P+
Sbjct:   212 LDDTVHVVIATPGRILDLIK--KGVAKVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQ  L+SAT    V+K   + L+ P +I    +  T+  + Q Y +V  + K   L  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEINLMEEL-TLKGVTQYYAYVTERQKVHCLNTL 328

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
              + +  + +++F  +     LLA  +  LG     I   M Q  R    + F+ G C  L
Sbjct:   329 FSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNL 388

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             +CTD+ +RG+DI +V++VIN+D P  ++ Y+H              I+L+  Y+  + L+
Sbjct:   389 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT-YDDRFNLK 447

Query:   368 -IEKLIG 373
              IE+ +G
Sbjct:   448 SIEEQLG 454


>UNIPROTKB|P54824 [details] [associations]
            symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
            "Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
            [GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
            GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
            RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
            GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
        Length = 481

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 114/367 (31%), Positives = 202/367 (55%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ EL+     +GW+ PS IQ E+IP AL G+D++  A+ G+GK+GA+ +P+L+ 
Sbjct:    97 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 156

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTLA 128
             L ++ ++        A V+ PTRELA+Q+S+    +   +   +     GG ++    + 
Sbjct:   157 L-DLKKD-----CIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 210

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             L    H+V+ATPGR++D +   KG + +  ++ +VLDEAD+LL+ DF + +++I+  +P+
Sbjct:   211 LDDTVHVVIATPGRILDLIK--KGVAKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPK 268

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQ  L+SAT    V+K     L+ P +I    +  T+  + Q Y +V  + K   L  +
Sbjct:   269 NRQILLYSATFPLSVQKFMTLHLQKPYEINLMEEL-TLKGVTQYYAYVTERQKVHCLNTL 327

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
              + +  + +++F  +     LLA  +  LG     I   M Q  R    + F+ G C  L
Sbjct:   328 FSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNL 387

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQ 367
             +CTD+ +RG+DI +V++VIN+D P  ++ Y+H              I+L+  Y+  + L+
Sbjct:   388 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT-YDDRFNLK 446

Query:   368 -IEKLIG 373
              IE+ +G
Sbjct:   447 SIEEQLG 453


>TAIR|locus:2160225 [details] [associations]
            symbol:AT5G54910 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0006606 "protein import into nucleus"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AB005232 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            IPI:IPI00527032 RefSeq:NP_200302.1 UniGene:At.29471
            ProteinModelPortal:Q9FFT9 SMR:Q9FFT9 STRING:Q9FFT9 PaxDb:Q9FFT9
            PRIDE:Q9FFT9 EnsemblPlants:AT5G54910.1 GeneID:835582
            KEGG:ath:AT5G54910 GeneFarm:988 TAIR:At5g54910 InParanoid:Q9FFT9
            OMA:PEDGVGC PhylomeDB:Q9FFT9 ProtClustDB:CLSN2686959
            Genevestigator:Q9FFT9 GermOnline:AT5G54910 Uniprot:Q9FFT9
        Length = 739

 Score = 492 (178.3 bits), Expect = 1.2e-46, P = 1.2e-46
 Identities = 124/342 (36%), Positives = 187/342 (54%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             V+ F +L + D+     ++  +   + +Q+ AIPHAL G+D++G A+TGSGKT AF +PI
Sbjct:    70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129

Query:    67 LQALLEIAENQRTVPAF-FACVL-SPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124
             L+ L      +R  P     C++ SPTRELA Q       +G        +L+GG + + 
Sbjct:   130 LEKL----HRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVD 185

Query:   125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
                      +I+V  PGRL+ H+  T  F    L+ L+LDEADR+L+  F+  LD I++ 
Sbjct:   186 VEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQ 245

Query:   185 IPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYK-D 241
             +P+ RQT LFSAT TKKVK L R  L++P  + + A +  +T  +L Q    VP + K D
Sbjct:   246 LPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLD 305

Query:   242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS---GHMSQSKRLGALNK 298
                 +I T ++ S  +VF  T    + +      L +  IP+    G MSQ KR+G  ++
Sbjct:   306 MLWSFIKTHLN-SRILVFLSTKKQVKFVHEAFNKL-RPGIPLKSLHGKMSQEKRMGVYSQ 363

Query:   299 FKAGECNILICTDVASRGLDIP-SVDMVINYDIPTNSKDYIH 339
             F   + ++L CTDV +RGLD   +VD V+  D P +   YIH
Sbjct:   364 FIERQ-SVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIH 404


>POMBASE|SPCC10H11.01 [details] [associations]
            symbol:prp11 "ATP-dependent RNA helicase Prp11"
            species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
            "spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
            EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
            RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
            IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
            GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
            NextBio:20800113 Uniprot:Q9P7C7
        Length = 1014

 Score = 498 (180.4 bits), Expect = 1.3e-46, P = 1.3e-46
 Identities = 122/375 (32%), Positives = 200/375 (53%)

Query:     5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             K V ++ + GL  + +    ++G++ P+ IQA+AIP    G+D+IG+A+TGSGKT AF L
Sbjct:   415 KPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLL 474

Query:    65 PILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124
             P+ + + +     +T     A +++PTRELA+QI  + +     +++R     GG  +  
Sbjct:   475 PMFRHIKD-QRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKD 533

Query:   125 QTLALGKRPHIVVATPGRLMDHLTNTKG--FSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
             Q   L +   IVV TPGR++D L+   G   +L    YLVLDEADR+ +  FE  +  I+
Sbjct:   534 QIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRII 593

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242
             N I   RQT LFSAT  + ++ L R  LK PV+I    +      ++Q     P + K  
Sbjct:   594 NNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFS 653

Query:   243 YLVYILTEVSASS----TMVFT-RTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALN 297
              L+ +L E+  +     T+VF  R   A  LL+ +++  G  +  I G   Q  R   ++
Sbjct:   654 RLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKR-GYTSNSIHGGKDQHDRDSTIS 712

Query:   298 KFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLV 357
              +KAG  ++LI T V +RGLD+ S+ +V+NYD P + +DY+H              ++ +
Sbjct:   713 DYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFI 772

Query:   358 NQYELEWYLQIEKLI 372
                + ++ + I K +
Sbjct:   773 TPEQEKYAVDIAKAL 787


>ASPGD|ASPL0000006660 [details] [associations]
            symbol:AN5931 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
            EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
            ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
            EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
            OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
        Length = 563

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 119/341 (34%), Positives = 189/341 (55%)

Query:     5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
             + V+TF E G    ++   +  G++ P+ IQ++  P AL G+D++G+A+TGSGKT ++ L
Sbjct:   137 RPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCL 196

Query:    65 PILQALLEIAENQRTVPAF--FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
             P   A++ I       P       +L+PTRELA+QI  +    G    +R   + GGV  
Sbjct:   197 P---AIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPK 253

Query:   123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
               Q   L +   + +ATPGRL+D L   +  +L  + YLVLDEADR+L+  FE  + +I+
Sbjct:   254 GPQIRDLSRGVEVCIATPGRLIDMLEAGRT-NLRRVTYLVLDEADRMLDMGFEPQIRKII 312

Query:   183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY--K 240
             + I   RQT ++SAT  K+V++L    L N +++   S   + +    Q   V +++  +
Sbjct:   313 SQIRPDRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKR 372

Query:   241 DCYLVYI--LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
             D  + ++  + E   +  +VFT T      +   LR  G  A+ I G   Q +R   LN+
Sbjct:   373 DRMIKHLEKIMENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNE 432

Query:   299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             FK G+  I++ TDVASRG+D+  +  VINYD P NS+DY+H
Sbjct:   433 FKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVH 473


>POMBASE|SPAC1F5.10 [details] [associations]
            symbol:SPAC1F5.10 "ATP-dependent RNA helicase
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
            OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
            ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
            EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
            NextBio:20802696 Uniprot:Q10055
        Length = 394

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 113/366 (30%), Positives = 190/366 (51%)

Query:     7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
             V +F+E+ L+++L+      G++TPS +Q+ AI    +G+D+I  AQ+G+GKT  F++ I
Sbjct:    20 VSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGI 79

Query:    67 LQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
             LQ++ L + + Q       A +LSPTRELA+QI     ALG  ++++C   +GG  +   
Sbjct:    80 LQSIDLSVRDTQ-------ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGND 132

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
                L    H+V  TPGR+ D +   +      +K L+LDEAD LLN  F++ + +I   +
Sbjct:   133 IKKLDYGQHVVSGTPGRVTD-MIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYL 191

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYL 244
             P   Q  + SAT+ + V ++      NPV+I       T++ LKQ +  V  + +K   L
Sbjct:   192 PPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTL 251

Query:   245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304
               +   ++ +  ++F  +      L   +R        + G M Q +R   +  F+ G  
Sbjct:   252 CDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNS 311

Query:   305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEW 364
              +LICTD+ +RG+D+  V +VINYD+P N ++YIH              I+ V   ++  
Sbjct:   312 RVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRI 371

Query:   365 YLQIEK 370
                IE+
Sbjct:   372 LRDIEQ 377


>TAIR|locus:2087852 [details] [associations]
            symbol:PMH2 "putative mitochondrial RNA helicase 2"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
            evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
            GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
            UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
            PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
            KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
            HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
            ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
            Uniprot:Q9LUW5
        Length = 616

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 120/369 (32%), Positives = 197/369 (53%)

Query:    12 ELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALL 71
             ELG+  E+V+A  + G +    IQ   +  A+EG+D+IG A+TG+GKT AF +PI+  ++
Sbjct:   108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167

Query:    72 EIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGK 131
             +              VL+PTRELA Q+ ++F      +   C  L GG  + QQ   L  
Sbjct:   168 KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLDY 225

Query:   132 RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQT 191
                + V TPGR++D L      +L  ++++VLDEAD++L   F + ++ IL  +P  RQ+
Sbjct:   226 GVDVAVGTPGRVID-LMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQS 284

Query:   192 YLFSATMTKKVKKLQRACLKNPVKIEAA--SKYSTVDTLKQQYRFVPAKYKDCYLVY-IL 248
              +FSATM   ++ L +  L NP+ ++    S     D +   Y  +   Y    ++  ++
Sbjct:   285 MMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITT-YSIIADSYGRASIIGPLV 343

Query:   249 TE-VSASSTMVFTRTC-DATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
             TE       +VFT+T  DA RL   + R+    A+   G +SQS+R   L  F+ G  NI
Sbjct:   344 TEHAKGGKCIVFTQTKRDADRLSYALARSFKCEAL--HGDISQSQRERTLAGFRDGHFNI 401

Query:   307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
             L+ TDVA+RGLD+P+VD++I+Y++P N++ ++H              I + +Q +     
Sbjct:   402 LVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVK 461

Query:   367 QIEKLIGKK 375
              IE+ +G +
Sbjct:   462 IIEREVGSR 470


>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
            symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
            PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
            RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
            Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
            NextBio:20787456 Uniprot:E7F1G8
        Length = 483

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 106/332 (31%), Positives = 190/332 (57%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F++  L+ EL+     +GW+ PS IQ E+IP AL G+D++  A+ G+GK+GA+ +P+L+ 
Sbjct:    90 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 149

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTLA 128
             + ++ ++        A VL PTRELA+Q+S+    +   +  ++     GG ++    + 
Sbjct:   150 I-DLKKDY-----IQAIVLVPTRELALQVSQISINMSKHLGGIKVMATTGGTNLRDDIMR 203

Query:   129 LGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             L +  H+++ATPGR++D +   KG + +  ++  V+DEAD+LL+ DF   +++I++ +P+
Sbjct:   204 LDEIVHVIIATPGRILDLIK--KGVAKVDKVQMAVMDEADKLLSQDFVVLIEDIISFLPK 261

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247
              RQ  L+SAT    V+K     L+ P +I    +  T+  + Q Y +V  + K   L  +
Sbjct:   262 KRQILLYSATFPISVQKFMTKHLQKPYEINLMDEL-TLKGITQYYAYVTERQKVHCLNTL 320

Query:   248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307
              + +  + +++F  +     LLA  +  LG     I   M Q  R    + F+ G C  L
Sbjct:   321 FSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRNRVFHDFRNGLCRNL 380

Query:   308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
             +CTD+ +RG+DI +V++VIN+D P N++ Y+H
Sbjct:   381 VCTDLFTRGIDIQAVNVVINFDFPKNAETYLH 412


>UNIPROTKB|F1P0I3 [details] [associations]
            symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
            OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
            Uniprot:F1P0I3
        Length = 875

 Score = 494 (179.0 bits), Expect = 2.0e-46, P = 2.0e-46
 Identities = 112/338 (33%), Positives = 183/338 (54%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             E++ F +  L  + ++  +   ++  ++IQ + I  AL+GKD++G A+TGSGKT AF +P
Sbjct:    71 EIQRFSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVP 130

Query:    66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
              L+ L  +     +       ++SPTRELA Q  +    +G        +++GG D+ ++
Sbjct:   131 ALELLYRL--QWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEE 188

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
             +  +    ++++ TPGRL+ H+  T  F    L+ L+LDEADR+L+  F  +++ I+  +
Sbjct:   189 SERI-HHINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENL 247

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
             P+ RQT LFSAT TK VK L R  LK+P  V +   +K+ST  TL Q Y     ++K   
Sbjct:   248 PKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKINV 307

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKA 301
             L   L       ++VF  +C   + L  +   L  G   + + G   Q KR+     F  
Sbjct:   308 LYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVR 367

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              +  +L  TD+A+RGLD P+V+ VI +D P ++  YIH
Sbjct:   368 KKAAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIH 405


>UNIPROTKB|Q5ZJF6 [details] [associations]
            symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
            UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
            STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
            HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
            NextBio:20822084 Uniprot:Q5ZJF6
        Length = 875

 Score = 494 (179.0 bits), Expect = 2.0e-46, P = 2.0e-46
 Identities = 112/338 (33%), Positives = 183/338 (54%)

Query:     6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
             E++ F +  L  + ++  +   ++  ++IQ + I  AL+GKD++G A+TGSGKT AF +P
Sbjct:    71 EIQRFSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVP 130

Query:    66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
              L+ L  +     +       ++SPTRELA Q  +    +G        +++GG D+ ++
Sbjct:   131 ALELLYRL--QWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEE 188

Query:   126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
             +  +    ++++ TPGRL+ H+  T  F    L+ L+LDEADR+L+  F  +++ I+  +
Sbjct:   189 SERI-HHINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENL 247

Query:   186 PRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243
             P+ RQT LFSAT TK VK L R  LK+P  V +   +K+ST  TL Q Y     ++K   
Sbjct:   248 PKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKINV 307

Query:   244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKA 301
             L   L       ++VF  +C   + L  +   L  G   + + G   Q KR+     F  
Sbjct:   308 LYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVR 367

Query:   302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
              +  +L  TD+A+RGLD P+V+ VI +D P ++  YIH
Sbjct:   368 KKAAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIH 405


>UNIPROTKB|Q485I3 [details] [associations]
            symbol:dbpA "ATP-dependent RNA helicase DbpA"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
            ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
            KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
            BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
        Length = 468

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 126/356 (35%), Positives = 190/356 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F  L L+ +LV+   ++G++  + IQA+ +P  L+GKD+IG A+TGSGKT AF L +L  
Sbjct:    12 FSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLNK 71

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLA 128
             L E+ + +  + +   C   PTRELA Q++++   L  GI +++   L GG     Q  +
Sbjct:    72 L-EVKKFR--IQSMVIC---PTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGS 125

Query:   129 LGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             L    H++V TPGRL +H+   KG   L  L  LVLDEADR+L   F+ +LD I+   P 
Sbjct:   126 LEHGAHVIVGTPGRLEEHVI--KGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY--LV 245
              RQT LFSAT   ++K +  + + +PV ++ AS      T+ Q++ F      D    L 
Sbjct:   184 DRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQ-STISQKF-FKVGNDDDRLDALR 241

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
              +L      ST +F  T   T+ +A  L   G   + + G + Q  R   L +F     +
Sbjct:   242 LLLLGNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSAS 301

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYE 361
             IL+ TDVA+RGLDI S+D+VINY I  +S+ ++H               SL +  E
Sbjct:   302 ILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKE 357


>TIGR_CMR|CPS_1540 [details] [associations]
            symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
            activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
            ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
            KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
            BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
        Length = 468

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 126/356 (35%), Positives = 190/356 (53%)

Query:    10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
             F  L L+ +LV+   ++G++  + IQA+ +P  L+GKD+IG A+TGSGKT AF L +L  
Sbjct:    12 FSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLNK 71

Query:    70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLA 128
             L E+ + +  + +   C   PTRELA Q++++   L  GI +++   L GG     Q  +
Sbjct:    72 L-EVKKFR--IQSMVIC---PTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGS 125

Query:   129 LGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
             L    H++V TPGRL +H+   KG   L  L  LVLDEADR+L   F+ +LD I+   P 
Sbjct:   126 LEHGAHVIVGTPGRLEEHVI--KGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183

Query:   188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY--LV 245
              RQT LFSAT   ++K +  + + +PV ++ AS      T+ Q++ F      D    L 
Sbjct:   184 DRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQ-STISQKF-FKVGNDDDRLDALR 241

Query:   246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
              +L      ST +F  T   T+ +A  L   G   + + G + Q  R   L +F     +
Sbjct:   242 LLLLGNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSAS 301

Query:   306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYE 361
             IL+ TDVA+RGLDI S+D+VINY I  +S+ ++H               SL +  E
Sbjct:   302 ILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKE 357

WARNING:  HSPs involving 686 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      437       385   0.00092  117 3  11 22  0.38    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  936
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  218 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.59u 0.10s 28.69t   Elapsed:  00:00:01
  Total cpu time:  28.64u 0.10s 28.74t   Elapsed:  00:00:01
  Start:  Sat May 11 16:16:50 2013   End:  Sat May 11 16:16:51 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT5G60990 AT5G60990 AT5G60990	protein from Arabidopsis thaliana	1.1e-156
BLAST match view associations BLAST with Ddx47 Ddx47 Ddx47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein from Mus musculus	4.9e-124
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Bos taurus	7.2e-123
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Homo sapiens	1.9e-122
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Canis lupus familiaris	3.1e-122
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Gallus gallus	2.0e-120
BLAST match view associations BLAST with CG9253 CG9253 CG9253	protein from Drosophila melanogaster	3.2e-120
BLAST match view associations BLAST with zgc:112350 zgc:112350 zgc:112350	gene_product from Danio rerio	9.8e-119
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Sus scrofa	4.2e-118
BLAST match view associations BLAST with T26G10.1 T26G10.1 T26G10.1	gene from Caenorhabditis elegans	1.8e-117
BLAST match view associations BLAST with ddx47 ddx47 ddx47 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.1e-113
BLAST match view associations BLAST with orf19.7546 orf19.7546 orf19.7546	gene_product from Candida albicans	1.7e-105
BLAST match view associations BLAST with RRP3 RRP3 RRP3 Protein involved in rRNA processing	gene from Saccharomyces cerevisiae	1.4e-96
BLAST match view associations BLAST with PFB0860c PFB0860c PFB0860c RNA helicase, putative	gene from Plasmodium falciparum	2.7e-91
BLAST match view associations BLAST with PFB0860c PFB0860c PFB0860c DEAD/DEAH box helicase, putative	protein from Plasmodium falciparum 3D7	2.7e-91
BLAST match view associations BLAST with ddx49 ddx49 ddx49 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	3.0e-85
BLAST match view associations BLAST with RH36 RH36 RH36 RNA helicase 36	protein from Arabidopsis thaliana	1.6e-77
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Probable ATP-dependent RNA helicase DDX49	protein from Homo sapiens	3.1e-76
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Sus scrofa	8.1e-76
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-75
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	3.5e-75
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	3.5e-75
BLAST match view associations BLAST with Ddx49 Ddx49 Ddx49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein from Mus musculus	7.3e-75
BLAST match view associations BLAST with Ddx49 Ddx49 Ddx49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	gene from Rattus norvegicus	1.2e-74
BLAST match view associations BLAST with ddx49 ddx49 ddx49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	gene_product from Danio rerio	1.6e-72
BLAST match view associations BLAST with H20J04.4 H20J04.4 H20J04.4	gene from Caenorhabditis elegans	1.1e-69
BLAST match view associations BLAST with DBP8 DBP8 DBP8	gene_product from Candida albicans	5.1e-67
BLAST match view associations BLAST with Dbp45A Dbp45A Dbp45A DEAD box protein 45A	protein from Drosophila melanogaster	2.9e-64
BLAST match view associations BLAST with DBP8 DBP8 DBP8 ATPase, putative RNA helicase	gene from Saccharomyces cerevisiae	4.8e-62
BLAST match view associations BLAST with DRS1 DRS1 DRS1 ATP-dependent RNA helicase DRS1	protein from Magnaporthe oryzae 70-15	3.3e-61
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus thuringiensis str. Al Hakam	4.3e-61
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus E33L	4.3e-61
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus thuringiensis serovar konkukian str. 97-27	4.3e-61
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus ATCC 10987	4.3e-61
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus ATCC 14579	4.3e-61
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus anthracis	4.3e-61
BLAST match view associations BLAST with BA_0247 BA_0247 BA_0247 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis str. Ames	4.3e-61
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Gallus gallus	1.5e-60
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-60
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-60
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Probable ATP-dependent RNA helicase DDX27	protein from Homo sapiens	2.4e-60
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD box family	protein from Vibrio cholerae O1 biovar El Tor str. N16961	2.4e-60
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Vibrio cholerae O1 biovar El Tor	2.4e-60
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Homo sapiens	2.9e-60
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Probable ATP-dependent RNA helicase DDX27	protein from Bos taurus	3.1e-60
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	3.9e-60
BLAST match view associations BLAST with AT4G16630 AT4G16630 AT4G16630	protein from Arabidopsis thaliana	5.0e-60
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor str. N16961	6.4e-60
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor	6.4e-60
BLAST match view associations BLAST with Ddx27 Ddx27 Ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein from Mus musculus	1.0e-59
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Gallus gallus	1.3e-59
BLAST match view associations BLAST with Y71G12B.8 Y71G12B.8 Y71G12B.8	gene from Caenorhabditis elegans	2.2e-59
BLAST match view associations BLAST with CPS_1125 CPS_1125 CPS_1125 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	3.5e-59
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Geobacillus kaustophilus HTA426	5.7e-59
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	gene_product from Danio rerio	7.3e-59
BLAST match view associations BLAST with rhlE_2 rhlE_2 rhlE_2 Putative ATP-dependent RNA helicase	protein from Pseudomonas protegens Pf-5	1.5e-58
BLAST match view associations BLAST with SO_4034 SO_4034 SO_4034 ATP-dependent RNA helicase DeaD	protein from Shewanella oneidensis MR-1	1.9e-58
BLAST match view associations BLAST with SO_3783 SO_3783 SO_3783 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	3.2e-58
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Escherichia coli K-12	4.0e-58
BLAST match view associations BLAST with deaD deaD deaD DeaD, DEAD-box RNA helicase	protein from Escherichia coli K-12	1.4e-57
BLAST match view associations BLAST with AT5G65900 AT5G65900 AT5G65900	protein from Arabidopsis thaliana	1.4e-57
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus licheniformis DSM 13 = ATCC 14580	1.7e-57
BLAST match view associations BLAST with ddx18 ddx18 ddx18 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	4.6e-57
BLAST match view associations BLAST with PSPPH_0449 PSPPH_0449 PSPPH_0449 ATP-dependent RNA helicase RhlE, putative	protein from Pseudomonas syringae pv. phaseolicola 1448A	4.6e-57
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Coxiella burnetii RSA 493	7.5e-57
BLAST match view associations BLAST with CBU_0670 CBU_0670 CBU_0670 ATP-dependent RNA helicase RhlE, putative	protein from Coxiella burnetii RSA 493	7.5e-57
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	gene from Plasmodium falciparum	1.2e-56
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	protein from Plasmodium falciparum 3D7	1.2e-56
BLAST match view associations BLAST with DRS1 DRS1 DRS1	gene_product from Candida albicans	1.6e-56
BLAST match view associations BLAST with DRS1 DRS1 DRS1 ATP-dependent RNA helicase DRS1	protein from Candida albicans SC5314	1.6e-56
BLAST match view associations BLAST with DRS1 DRS1 DRS1 Nucleolar DEAD-box protein required for ribosome assembly and function	gene from Saccharomyces cerevisiae	2.5e-56
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase RhlE	protein from Hyphomonas neptunium ATCC 15444	4.2e-56
BLAST match view associations BLAST with SO_1383 SO_1383 SO_1383 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	5.3e-56
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	8.6e-56
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	8.6e-56
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus subtilis subsp. subtilis str. 168	1.1e-55
BLAST match view associations BLAST with AT3G18600 AT3G18600 AT3G18600	protein from Arabidopsis thaliana	1.1e-55
BLAST match view associations BLAST with Rs1 Rs1 Rs1	protein from Drosophila melanogaster	1.4e-55
BLAST match view associations BLAST with GSU_0914 GSU_0914 GSU_0914 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	2.9e-55
BLAST match view associations BLAST with SPO_1443 SPO_1443 SPO_1443 ATP-dependent RNA helicase RhlE	protein from Ruegeria pomeroyi DSS-3	3.7e-55
BLAST match view associations BLAST with CHY_0229 CHY_0229 CHY_0229 ATP-dependent RNA helicase, DEAD box family	protein from Carboxydothermus hydrogenoformans Z-2901	4.8e-55
BLAST match view associations BLAST with CHY_0229 CHY_0229 CHY_0229 ATP-dependent RNA helicase, DEAD box family	protein from Carboxydothermus hydrogenoformans Z-2901	4.8e-55
BLAST match view associations BLAST with LOC100626268 LOC100626268 LOC100626268 Uncharacterized protein	protein from Sus scrofa	7.8e-55
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	1.6e-54
BLAST match view associations BLAST with VC_0660 VC_0660 VC_0660 ATP-dependent RNA helicase SrmB	protein from Vibrio cholerae O1 biovar El Tor str. N16961	1.6e-54
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	1.6e-54
BLAST match view associations BLAST with VC_0660 VC_0660 VC_0660 ATP-dependent RNA helicase SrmB	protein from Vibrio cholerae O1 biovar El Tor	1.6e-54
BLAST match view associations BLAST with orf19.5991 orf19.5991 orf19.5991	gene_product from Candida albicans	1.6e-54
BLAST match view associations BLAST with BAS5307 BAS5307 BAS5307 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis	4.3e-54
BLAST match view associations BLAST with BA_5703 BA_5703 BA_5703 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis str. Ames	4.3e-54
BLAST match view associations BLAST with HAS1 HAS1 HAS1 ATP-dependent RNA helicase	gene from Saccharomyces cerevisiae	4.3e-54
BLAST match view associations BLAST with deaD deaD deaD Cold-shock DEAD box protein A	protein from Pseudomonas protegens Pf-5	5.5e-54