BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013727
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 306 bits (783), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/220 (67%), Positives = 179/220 (81%), Gaps = 6/220 (2%)
Query: 1 MAEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
+ EE+E KTFK+LG+ D L EAC+ +GW P+KIQ EAIP AL+G+D+IGLA+TGSGKTG
Sbjct: 36 IVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTG 95
Query: 61 AFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 120
AFALPIL ALLE + FA VL+PTRELA QISEQFEALGS I ++ AV+VGG+
Sbjct: 96 AFALPILNALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGI 149
Query: 121 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDE 180
D M Q+LAL K+PHI++ATPGRL+DHL NTKGF+L LKYLV+DEADR+LN DFE +D+
Sbjct: 150 DSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDK 209
Query: 181 ILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 220
IL VIPR R+T+LFSATMTKKV+KLQRA LKNPVK +S
Sbjct: 210 ILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 249
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 195/365 (53%), Gaps = 8/365 (2%)
Query: 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
TF++ L+ EL+ G++ PS IQ EAIP A+ G+D++ A+ G+GKT AF +P L+
Sbjct: 22 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 81
Query: 69 ALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128
+ + + A ++ PTRELA+Q S+ LG + C V GG ++ L
Sbjct: 82 KV------KPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR 135
Query: 129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188
L + HI+V TPGR++D L + K L ++DEAD++L+ DF+ +++IL+ +P
Sbjct: 136 LNETVHILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT 194
Query: 189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248
Q+ LFSAT VK+ L P +I + T+ + Q Y FV + K L +
Sbjct: 195 HQSLLFSATFPLTVKEFMVKHLHKPYEINLMEEL-TLKGITQYYAFVEERQKLHCLNTLF 253
Query: 249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308
+++ + ++F + + LLA + +LG M Q +R ++F+ G+ L+
Sbjct: 254 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 313
Query: 309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYLQI 368
C+D+ +RG+DI +V++VIN+D P ++ Y+H I+L+N + +I
Sbjct: 314 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 373
Query: 369 EKLIG 373
E+ +G
Sbjct: 374 EQELG 378
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 131/376 (34%), Positives = 203/376 (53%), Gaps = 31/376 (8%)
Query: 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGK-DLIGLAQTGSGKTGAF 62
E E F EL L D ++ A N G++ P+ IQ + IP L + +++ A+TGSGKT +F
Sbjct: 2 EVEYXNFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASF 61
Query: 63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122
A+P+++ + EN A +L+PTRELAIQ++++ E+L +L+ A + GG +
Sbjct: 62 AIPLIEL---VNENN----GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAI 114
Query: 123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
Q AL K +IVV TPGR++DH+ N +L +KY +LDEAD LN F K +++IL
Sbjct: 115 YPQIKAL-KNANIVVGTPGRILDHI-NRGTLNLKNVKYFILDEADEXLNXGFIKDVEKIL 172
Query: 183 NVIPRMRQTYLFSATMTKKVKKLQRACLKN----PVKIEAASKYSTVDTLKQQYRFVPA- 237
N + ++ LFSAT +++ L + + KI A + S V+ + + RF
Sbjct: 173 NACNKDKRILLFSATXPREILNLAKKYXGDYSFIKAKINANIEQSYVE-VNENERFEALC 231
Query: 238 ---KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLG 294
K K+ Y +VF +T T+ LA LR++G +A I G +SQS+R
Sbjct: 232 RLLKNKEFY------------GLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREK 279
Query: 295 ALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXI 354
+ FK + ILI TDV SRG+D+ ++ VINY +P N + Y H I
Sbjct: 280 VIRLFKQKKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAI 339
Query: 355 SLVNQYELEWYLQIEK 370
S++N+ E + IE+
Sbjct: 340 SIINRREYKKLRYIER 355
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 11/341 (3%)
Query: 2 AEEKEVK-TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
+EE +V TF +GLR++L+ G++ PS IQ AI ++G+D+I +Q+G+GKT
Sbjct: 31 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA 90
Query: 61 AFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
F++ +LQ L +++ E Q A +L+PTRELA+QI + ALG ++++C +GG
Sbjct: 91 TFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGG 143
Query: 120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
++ + L H+V TPGR+ D + + +K LVLDEAD +LN F++ +
Sbjct: 144 TNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY 202
Query: 180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AK 238
++ +P Q L SAT+ ++ ++ + +P++I T++ +KQ + V +
Sbjct: 203 DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 262
Query: 239 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
+K L + ++ + ++F T L +R + G M Q +R + +
Sbjct: 263 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
F++G +LI TDV +RGLD+P V ++INYD+P N + YIH
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 363
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 11/341 (3%)
Query: 2 AEEKEVK-TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
+EE +V TF +GLR++L+ G++ PS IQ AI ++G+D+I +Q+G+GKT
Sbjct: 31 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA 90
Query: 61 AFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
F++ +LQ L +++ E Q A +L+PTRELA+QI + ALG ++++C +GG
Sbjct: 91 TFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGG 143
Query: 120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
++ + L H+V TPGR+ D + + +K LVLDEAD +LN F++ +
Sbjct: 144 TNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY 202
Query: 180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AK 238
++ +P Q L SAT+ ++ ++ + +P++I T++ +KQ + V +
Sbjct: 203 DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 262
Query: 239 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
+K L + ++ + ++F T L +R + G M Q +R + +
Sbjct: 263 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
F++G +LI TDV +RGLD+P V ++INYD+P N + YIH
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 363
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 11/341 (3%)
Query: 2 AEEKEVK-TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
+EE +V TF +GLR++L+ G++ PS IQ AI ++G+D+I +Q+G+GKT
Sbjct: 30 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA 89
Query: 61 AFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
F++ +LQ L +++ E Q A +L+PTRELA+QI + ALG ++++C +GG
Sbjct: 90 TFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGG 142
Query: 120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
++ + L H+V TPGR+ D + + +K LVLDEAD +LN F++ +
Sbjct: 143 TNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY 201
Query: 180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AK 238
++ +P Q L SAT+ ++ ++ + +P++I T++ +KQ + V +
Sbjct: 202 DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 261
Query: 239 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
+K L + ++ + ++F T L +R + G M Q +R + +
Sbjct: 262 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 321
Query: 299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
F++G +LI TDV +RGLD+P V ++INYD+P N + YIH
Sbjct: 322 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 362
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 11/341 (3%)
Query: 2 AEEKEVK-TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTG 60
+EE +V TF +GLR++L+ G++ PS IQ AI ++G+D+I +Q+G+GKT
Sbjct: 9 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA 68
Query: 61 AFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
F++ +LQ L +++ E Q A +L+PTRELA+QI + ALG ++++C +GG
Sbjct: 69 TFSISVLQCLDIQVRETQ-------ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGG 121
Query: 120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
++ + L H+V TPGR+ D + + +K LVLDEAD +LN F++ +
Sbjct: 122 TNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY 180
Query: 180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AK 238
++ +P Q L SAT+ ++ ++ + +P++I T++ +KQ + V +
Sbjct: 181 DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 240
Query: 239 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298
+K L + ++ + ++F T L +R + G M Q +R + +
Sbjct: 241 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 300
Query: 299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
F++G +LI TDV +RGLD+P V ++INYD+P N + YIH
Sbjct: 301 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 341
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/333 (31%), Positives = 184/333 (55%), Gaps = 10/333 (3%)
Query: 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
TF +GLR++L+ G++ PS IQ AI ++G+D+I +Q+G+GKT F++ +LQ
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 69 AL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
L +++ E Q A +L+PTRELA+Q+ + ALG ++++C +GG ++ +
Sbjct: 62 CLDIQVRETQ-------ALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIR 114
Query: 128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
L H+V TPGR+ D + + +K LVLDEAD +LN F++ + ++ +P
Sbjct: 115 KLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 173
Query: 188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKYKDCYLVY 246
Q L SAT+ ++ ++ + +P++I T++ +KQ + V ++K L
Sbjct: 174 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 233
Query: 247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
+ ++ + ++F T L +R + G M Q +R + +F++G +
Sbjct: 234 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 293
Query: 307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
LI TDV +RGLD+P V ++INYD+P N + YIH
Sbjct: 294 LISTDVWARGLDVPQVSLIINYDLPNNRELYIH 326
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/353 (35%), Positives = 192/353 (54%), Gaps = 22/353 (6%)
Query: 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
+++F ++ + + ++ E + P+ +Q AIP E +DL+ AQTGSGKT AF LP
Sbjct: 13 HIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLP 72
Query: 66 IL---------QALLEIAENQR-----TVPAFFACVLSPTRELAIQISEQFEALGSGISL 111
IL +AL + EN R P + VL+PTRELA+QI E+ +
Sbjct: 73 ILSQIYSDGPGEALRAMKENGRYGRRKQYP--ISLVLAPTRELAVQIYEEARKFSYRSRV 130
Query: 112 RCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN 171
R V+ GG D+ QQ L + H++VATPGRL+D + K L KYLVLDEADR+L+
Sbjct: 131 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK-IGLDFCKYLVLDEADRMLD 189
Query: 172 DDFEKSLDEIL--NVIPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDT 227
FE + I+ + +P +R T +FSAT K+++ L R L + + ST +
Sbjct: 190 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN 249
Query: 228 LKQQYRFVPAKYKDCYLVYILTEVSASS-TMVFTRTCDATRLLALMLRNLGQRAIPISGH 286
+ Q+ +V K +L+ +L S T+VF T L L + G I G
Sbjct: 250 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 309
Query: 287 MSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
SQ R AL++F++G+ IL+ T VA+RGLDI +V VIN+D+P++ ++Y+H
Sbjct: 310 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 362
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 178/339 (52%), Gaps = 9/339 (2%)
Query: 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
+ ++ F LRD +++ G+K P+ IQ +IP G+DL+ AQTGSGKT AF L
Sbjct: 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLL 112
Query: 65 PILQALLEIA-ENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123
PIL LLE E + P ++SPTRELAIQI + L+ ++ GG
Sbjct: 113 PILSKLLEDPHELELGRPQ--VVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFR 170
Query: 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
Q + + H+V+ATPGRL+D + T + +++VLDEADR+L+ F + + I+
Sbjct: 171 HQNECITRGCHVVIATPGRLLDFVDRTF-ITFEDTRFVVLDEADRMLDMGFSEDMRRIMT 229
Query: 184 VIPRMR---QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK 240
+ MR QT +FSAT ++++++ LKN V + +KQ V K
Sbjct: 230 HV-TMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAK 288
Query: 241 DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK 300
L+ IL+E A T+VF T LA L I G QS+R AL FK
Sbjct: 289 RSKLIEILSE-QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFK 347
Query: 301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
G +LI T VASRGLDI ++ VINYD+P+ DY+H
Sbjct: 348 NGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVH 386
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/333 (31%), Positives = 183/333 (54%), Gaps = 10/333 (3%)
Query: 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 68
TF +GLR++L+ G++ PS IQ AI ++G+D+I +Q+G+GKT F++ +LQ
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 69 AL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127
L +++ E Q A +L+PTRELA+Q+ + ALG ++++ +GG ++ +
Sbjct: 62 CLDIQVRETQ-------ALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIR 114
Query: 128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187
L H+V TPGR+ D + + +K LVLDEAD +LN F++ + ++ +P
Sbjct: 115 KLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 173
Query: 188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKYKDCYLVY 246
Q L SAT+ +V ++ + +P++I T++ +KQ + V ++K L
Sbjct: 174 ATQVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 233
Query: 247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
+ ++ + ++F T L +R + G M Q +R + +F++G +
Sbjct: 234 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 293
Query: 307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
LI TDV +RGLD+P V ++INYD+P N + YIH
Sbjct: 294 LISTDVWARGLDVPQVSLIINYDLPNNRELYIH 326
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 189/369 (51%), Gaps = 9/369 (2%)
Query: 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFA 63
+K V F ++ L + L+ G++ PS IQ AI +EG D++ AQ+G+GKTG F+
Sbjct: 18 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 77
Query: 64 LPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123
+ LQ + +V A A +L+PTRELA+QI + AL + ++ +GG +
Sbjct: 78 IAALQRI------DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 131
Query: 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
+ L + IVV TPGR+ D++ + F +K +LDEAD +L+ F++ + +I
Sbjct: 132 EDAEGL-RDAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFT 189
Query: 184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDC 242
++P Q L SATM V ++ ++NPV+I T++ +KQ Y V + YK
Sbjct: 190 LLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYE 249
Query: 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
L + +S + ++F T L LRN I + Q +R + +F++G
Sbjct: 250 CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 309
Query: 303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
ILI TD+ +RG+D+ V +VINYD+P N ++YIH I+ V ++
Sbjct: 310 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 369
Query: 363 EWYLQIEKL 371
++EK
Sbjct: 370 GAMRELEKF 378
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 186/334 (55%), Gaps = 11/334 (3%)
Query: 10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
F++ L+ EL+ A + G++ PS++Q E IP A+ G D++ A++G GKT F L LQ
Sbjct: 9 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 68
Query: 70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLA 128
L E Q +V V+ TRELA QIS+++E + +++ AV GG+ + +
Sbjct: 69 L-EPVTGQVSV-----LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 122
Query: 129 LGKR-PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIP 186
L K PHIVV TPGR++ L K +L +K+ +LDEAD++L D + + EI + P
Sbjct: 123 LKKNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTP 181
Query: 187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS-TVDTLKQQYRFVPAKYKDCYLV 245
+Q +FSAT++K+++ + R +++P++I + T+ L+Q Y + K+ L
Sbjct: 182 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 241
Query: 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
+L + + ++F ++ LA +L AI I M Q +RL +FK +
Sbjct: 242 DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 301
Query: 306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
IL+ T++ RG+DI V++ NYD+P +S Y+H
Sbjct: 302 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 335
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 185/339 (54%), Gaps = 17/339 (5%)
Query: 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
V +F ++ L + L+ G++ PS IQ AI ++G D+I AQ+G+GKT FA+ I
Sbjct: 13 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 72
Query: 67 LQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
LQ + L++ Q A VL+PTRELA QI + ALG + C +GG ++ +
Sbjct: 73 LQQIELDLKATQ-------ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE 125
Query: 126 TLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
L + PHI+V TPGR+ D L N + S +K VLDEAD +L+ F+ + +I
Sbjct: 126 VQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 184
Query: 185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKYKDCY 243
+ Q L SATM V ++ + +++P++I + T++ ++Q Y V ++K
Sbjct: 185 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 244
Query: 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS---GHMSQSKRLGALNKFK 300
L + ++ + ++F T R + + + R +S G M Q +R + +F+
Sbjct: 245 LCDLYETLTITQAVIFINT---RRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 301
Query: 301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
+G +LI TD+ +RG+D+ V +VINYD+PTN ++YIH
Sbjct: 302 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 340
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 185/339 (54%), Gaps = 17/339 (5%)
Query: 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
V +F ++ L + L+ G++ PS IQ AI ++G D+I AQ+G+GKT FA+ I
Sbjct: 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 98
Query: 67 LQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
LQ + L++ Q A VL+PTRELA QI + ALG + C +GG ++ +
Sbjct: 99 LQQIELDLKATQ-------ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE 151
Query: 126 TLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
L + PHI+V TPGR+ D L N + S +K VLDEAD +L+ F+ + +I
Sbjct: 152 VQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 210
Query: 185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKYKDCY 243
+ Q L SATM V ++ + +++P++I + T++ ++Q Y V ++K
Sbjct: 211 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 270
Query: 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS---GHMSQSKRLGALNKFK 300
L + ++ + ++F T R + + + R +S G M Q +R + +F+
Sbjct: 271 LCDLYETLTITQAVIFINT---RRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 327
Query: 301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
+G +LI TD+ +RG+D+ V +VINYD+PTN ++YIH
Sbjct: 328 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 366
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 185/334 (55%), Gaps = 11/334 (3%)
Query: 10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
F++ L+ EL+ A + G++ PS++Q E IP A+ G D++ A++G GKT F L LQ
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 69
Query: 70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLA 128
L E Q +V V+ TRELA QIS+++E + +++ AV GG+ + +
Sbjct: 70 L-EPVTGQVSV-----LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 123
Query: 129 LGKR-PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIP 186
L K PHIVV TPGR++ L K +L +K+ +LDE D++L D + + EI + P
Sbjct: 124 LKKNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 182
Query: 187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS-TVDTLKQQYRFVPAKYKDCYLV 245
+Q +FSAT++K+++ + R +++P++I + T+ L+Q Y + K+ L
Sbjct: 183 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242
Query: 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
+L + + ++F ++ LA +L AI I M Q +RL +FK +
Sbjct: 243 DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 302
Query: 306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
IL+ T++ RG+DI V++ NYD+P +S Y+H
Sbjct: 303 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 336
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 185/334 (55%), Gaps = 11/334 (3%)
Query: 10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
F++ L+ EL+ A + G++ PS++Q E IP A+ G D++ A++G GKT F L LQ
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 69
Query: 70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLA 128
L E Q +V V+ TRELA QIS+++E + +++ AV GG+ + +
Sbjct: 70 L-EPVTGQVSV-----LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 123
Query: 129 LGKR-PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIP 186
L K PHIVV TPGR++ L K +L +K+ +LDE D++L D + + EI + P
Sbjct: 124 LKKNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 182
Query: 187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS-TVDTLKQQYRFVPAKYKDCYLV 245
+Q +FSAT++K+++ + R +++P++I + T+ L+Q Y + K+ L
Sbjct: 183 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242
Query: 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305
+L + + ++F ++ LA +L AI I M Q +RL +FK +
Sbjct: 243 DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 302
Query: 306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
IL+ T++ RG+DI V++ NYD+P +S Y+H
Sbjct: 303 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 336
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 182/369 (49%), Gaps = 9/369 (2%)
Query: 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFA 63
+K V F + L + L+ G++ PS IQ AI +EG D++ AQ+G+GKTG F+
Sbjct: 17 DKVVYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFS 76
Query: 64 LPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123
+ LQ + +V A A L+PTRELA+QI + AL ++ +GG +
Sbjct: 77 IAALQRI------DTSVKAPQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFV 130
Query: 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
+ L + IVV TPGR+ D++ + F +K +LDEAD L+ F++ + +I
Sbjct: 131 EDAEGL-RDAQIVVGTPGRVFDNIQRRR-FRTDKIKXFILDEADEXLSSGFKEQIYQIFT 188
Query: 184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDC 242
++P Q L SAT V ++ +NPV+I T++ +KQ Y V + YK
Sbjct: 189 LLPPTTQVVLLSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYE 248
Query: 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
L + +S + ++F T L LRN I + Q +R +F++G
Sbjct: 249 CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSG 308
Query: 303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYEL 362
ILI TD+ +RG+D+ V +VINYD+P N ++YIH I+ V ++
Sbjct: 309 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 368
Query: 363 EWYLQIEKL 371
++EK
Sbjct: 369 GAXRELEKF 377
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 186/350 (53%), Gaps = 24/350 (6%)
Query: 15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIA 74
+ +++ +A +G+K +++Q++ IP L+GK+++ A+TGSGKT A+A+PIL+ ++
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMK-- 58
Query: 75 ENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPH 134
+ V++PTREL Q++ +G + + A + GG+ Q + +
Sbjct: 59 ----------SLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNAD 107
Query: 135 IVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194
IVVATPGRL+D L + L + + +++DEAD + F + IL + T LF
Sbjct: 108 IVVATPGRLLD-LWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLF 166
Query: 195 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS 254
SAT+ ++++K+ + + N +IEA + V +++FV K V L E
Sbjct: 167 SATIPEEIRKVVKDFITNYEEIEACIGLANV-----EHKFVHVKDDWRSKVQALRENKDK 221
Query: 255 STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVAS 314
+VF RT + L + N AI + G + QS R ++ F+ GE ++LI TDVAS
Sbjct: 222 GVIVFVRTRNRVAKLVRLFDN----AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVAS 277
Query: 315 RGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLV-NQYELE 363
RGLDIP V+ VIN+D P + + YIH I+ + N+Y LE
Sbjct: 278 RGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILNEYWLE 327
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 124/207 (59%), Gaps = 6/207 (2%)
Query: 10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
FK+ L+ E++EA G TP+ IQA A+P ALEGKDLIG A+TG+GKT AFALPI +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
L E R A VL+PTRELA+Q++ + A+ L+ + GG +Q AL
Sbjct: 63 LAPSQERGRKP---RALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEAL 117
Query: 130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
+ VVATPGR +D+L L ++ VLDEAD +L+ FE+ ++ +L+ P R
Sbjct: 118 LRGADAVVATPGRALDYLRQGV-LDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 176
Query: 190 QTYLFSATMTKKVKKLQRACLKNPVKI 216
QT LFSAT+ K+L +KNPV I
Sbjct: 177 QTLLFSATLPSWAKRLAERYMKNPVLI 203
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 168/337 (49%), Gaps = 59/337 (17%)
Query: 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIA-ENQRTVPAFFACVLSPTRELAIQIS--- 99
E D+I A+TG+GKT AF +PI Q L+ ++Q V A +++PTR+LA+QI
Sbjct: 59 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKA---VIVAPTRDLALQIEAEV 115
Query: 100 EQFEALGSGIS-LRCAVLVGGVDMMQQTLALGK-RPHIVVATPGRLMDHLTNTKGFSLGT 157
++ + G+ C LVGG D + K RP+IV+ATPGRL+D L
Sbjct: 116 KKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 175
Query: 158 LKYLVLDEADRLLNDDFEKSLDEILNVIPRMR-------QTYLFSATMTKKVKKL----- 205
+ Y VLDEADRLL F L+ I ++ +T LFSAT+ KV+KL
Sbjct: 176 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM 235
Query: 206 -QRACL------KN-PVKIE------------AASKYSTVDTLKQQYRFVPAKYKDCYLV 245
++ CL KN P E A S ++ V+ +K+Q + + YK
Sbjct: 236 NKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYK----- 290
Query: 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI---SGHMSQSKRLGALNKFKAG 302
++F T T L +L+N ++ +PI G ++Q+KR + +FK
Sbjct: 291 ----------AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD 340
Query: 303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
E IL+CTDV +RG+D P+V V+ +P+ +YIH
Sbjct: 341 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 377
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 168/337 (49%), Gaps = 59/337 (17%)
Query: 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIA-ENQRTVPAFFACVLSPTRELAIQIS--- 99
E D+I A+TG+GKT AF +PI Q L+ ++Q V A +++PTR+LA+QI
Sbjct: 110 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKA---VIVAPTRDLALQIEAEV 166
Query: 100 EQFEALGSGIS-LRCAVLVGGVDMMQQTLALGK-RPHIVVATPGRLMDHLTNTKGFSLGT 157
++ + G+ C LVGG D + K RP+IV+ATPGRL+D L
Sbjct: 167 KKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 226
Query: 158 LKYLVLDEADRLLNDDFEKSLDEILNVIPRMR-------QTYLFSATMTKKVKKL----- 205
+ Y VLDEADRLL F L+ I ++ +T LFSAT+ KV+KL
Sbjct: 227 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM 286
Query: 206 -QRACL------KN-PVKIE------------AASKYSTVDTLKQQYRFVPAKYKDCYLV 245
++ CL KN P E A S ++ V+ +K+Q + + YK
Sbjct: 287 NKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYK----- 341
Query: 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI---SGHMSQSKRLGALNKFKAG 302
++F T T L +L+N ++ +PI G ++Q+KR + +FK
Sbjct: 342 ----------AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD 391
Query: 303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
E IL+CTDV +RG+D P+V V+ +P+ +YIH
Sbjct: 392 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 428
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 168/337 (49%), Gaps = 59/337 (17%)
Query: 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIA-ENQRTVPAFFACVLSPTRELAIQIS--- 99
E D+I A+TG+GKT AF +PI Q L+ ++Q V A +++PTR+LA+QI
Sbjct: 59 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKA---VIVAPTRDLALQIEAEV 115
Query: 100 EQFEALGSGIS-LRCAVLVGGVDMMQQTLALGK-RPHIVVATPGRLMDHLTNTKGFSLGT 157
++ + G+ C LVGG D + K RP+IV+ATPGRL+D L
Sbjct: 116 KKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 175
Query: 158 LKYLVLDEADRLLNDDFEKSLDEILNVIPRMR-------QTYLFSATMTKKVKKL----- 205
+ Y VLDEADRLL F L+ I ++ +T LFSAT+ KV+KL
Sbjct: 176 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM 235
Query: 206 -QRACL------KN-PVKIE------------AASKYSTVDTLKQQYRFVPAKYKDCYLV 245
++ CL KN P E A S ++ V+ +K+Q + + YK
Sbjct: 236 NKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYK----- 290
Query: 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI---SGHMSQSKRLGALNKFKAG 302
++F T T L +L+N ++ +PI G ++Q+KR + +FK
Sbjct: 291 ----------AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD 340
Query: 303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
E IL+CTDV +RG+D P+V V+ +P+ +YIH
Sbjct: 341 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 377
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 124/207 (59%), Gaps = 6/207 (2%)
Query: 10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
FK+ L+ E++EA G TP+ I+A A+P ALEGKDLIG A+TG+GKT AFALPI +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL 129
L E R A VL+PTRELA+Q++ + A+ L+ + GG +Q AL
Sbjct: 63 LAPSQERGRKP---RALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEAL 117
Query: 130 GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189
+ VVATPGR +D+L L ++ VLDEAD +L+ FE+ ++ +L+ P R
Sbjct: 118 LRGADAVVATPGRALDYLRQGV-LDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 176
Query: 190 QTYLFSATMTKKVKKLQRACLKNPVKI 216
QT LFSAT+ K+L +KNPV I
Sbjct: 177 QTLLFSATLPSWAKRLAERYMKNPVLI 203
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 173/346 (50%), Gaps = 24/346 (6%)
Query: 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGAFAL 64
VK+F+EL L+ +L++ +G+ PSKIQ A+P L ++LI +Q+G+GKT AF L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 65 PILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMM 123
A+L E P LSPT ELA+Q + E +G L+ A V G
Sbjct: 84 ----AMLSQVEPANKYPQCLC--LSPTYELALQTGKVIEQMGKFYPELKLAYAVRG---- 133
Query: 124 QQTLALGKR--PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL-NDDFEKSLDE 180
L G++ IV+ TPG ++D + K +K VLDEAD ++ +
Sbjct: 134 -NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 192
Query: 181 ILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-Y 239
I ++PR Q LFSAT V K + + +P I+ + T+DT+KQ Y ++
Sbjct: 193 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 252
Query: 240 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 299
K L + ++ + M+F T LA L G + +SG M +R + +F
Sbjct: 253 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 312
Query: 300 KAGECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIH 339
+ G+ +L+ T+V +RG+D+ V +VIN+D+P +++ Y+H
Sbjct: 313 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLH 358
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 148 bits (373), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 173/346 (50%), Gaps = 24/346 (6%)
Query: 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGAFAL 64
VK+F+EL L+ +L++ +G+ PSKIQ A+P L ++LI +Q+G+GKT AF L
Sbjct: 40 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 99
Query: 65 PILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMM 123
A+L E P LSPT ELA+Q + E +G L+ A V G
Sbjct: 100 ----AMLSQVEPANKYPQCLC--LSPTYELALQTGKVIEQMGKFYPELKLAYAVRG---- 149
Query: 124 QQTLALGKR--PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL-NDDFEKSLDE 180
L G++ IV+ TPG ++D + K +K VLDEAD ++ +
Sbjct: 150 -NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 208
Query: 181 ILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-Y 239
I ++PR Q LFSAT V K + + +P I+ + T+DT+KQ Y ++
Sbjct: 209 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 268
Query: 240 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 299
K L + ++ + M+F T LA L G + +SG M +R + +F
Sbjct: 269 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 328
Query: 300 KAGECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIH 339
+ G+ +L+ T+V +RG+D+ V +VIN+D+P +++ Y+H
Sbjct: 329 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLH 374
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 147 bits (372), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 173/346 (50%), Gaps = 24/346 (6%)
Query: 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGAFAL 64
VK+F+EL L+ +L++ +G+ PSKIQ A+P L ++LI +Q+G+GKT AF L
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 65 PILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMM 123
A+L E P LSPT ELA+Q + E +G L+ A V G
Sbjct: 151 ----AMLSQVEPANKYPQCLC--LSPTYELALQTGKVIEQMGKFYPELKLAYAVRG---- 200
Query: 124 QQTLALGKR--PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD-E 180
L G++ IV+ TPG ++D + K +K VLDEAD ++ +
Sbjct: 201 -NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 259
Query: 181 ILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-Y 239
I ++PR Q LFSAT V K + + +P I+ + T+DT+KQ Y ++
Sbjct: 260 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 319
Query: 240 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 299
K L + ++ + M+F T LA L G + +SG M +R + +F
Sbjct: 320 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 379
Query: 300 KAGECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIH 339
+ G+ +L+ T+V +RG+D+ V +VIN+D+P +++ Y+H
Sbjct: 380 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLH 425
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 147 bits (372), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 173/346 (50%), Gaps = 24/346 (6%)
Query: 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGAFAL 64
VK+F+EL L+ +L++ +G+ PSKIQ A+P L ++LI +Q+G+GKT AF L
Sbjct: 61 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 120
Query: 65 PILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMM 123
A+L E P LSPT ELA+Q + E +G L+ A V G
Sbjct: 121 ----AMLSQVEPANKYPQCLC--LSPTYELALQTGKVIEQMGKFYPELKLAYAVRG---- 170
Query: 124 QQTLALGKR--PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD-E 180
L G++ IV+ TPG ++D + K +K VLDEAD ++ +
Sbjct: 171 -NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 229
Query: 181 ILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-Y 239
I ++PR Q LFSAT V K + + +P I+ + T+DT+KQ Y ++
Sbjct: 230 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 289
Query: 240 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 299
K L + ++ + M+F T LA L G + +SG M +R + +F
Sbjct: 290 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 349
Query: 300 KAGECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIH 339
+ G+ +L+ T+V +RG+D+ V +VIN+D+P +++ Y+H
Sbjct: 350 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLH 395
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
Query: 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
E+ F + L + ++ + ++ ++IQ + I AL+GKD++G A+TGSGKT AF +P
Sbjct: 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVP 82
Query: 66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
+L+AL + + ++SPTRELA Q E +G +++GG D+ +
Sbjct: 83 VLEALYRL--QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 140
Query: 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
+ +I+V TPGRL+ H+ T F L+ LVLDEADR+L+ F +++ ++ +
Sbjct: 141 AERINN-INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL 199
Query: 186 PRMRQTYLFSATMTKKVKKLQRACLKNP 213
P+ RQT LFSAT TK VK L R LKNP
Sbjct: 200 PKKRQTLLFSATQTKSVKDLARLSLKNP 227
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 141 bits (356), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 133/232 (57%), Gaps = 8/232 (3%)
Query: 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
++ F EL L + ++ P+ IQ AIP LE +D++ AQTGSGKT AF +PI
Sbjct: 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPI 81
Query: 67 LQALL--EIAENQRTVPAFFAC-VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123
+ L+ ++ + + + A+ C +L+PTRELAIQI + + LR V+ GG D
Sbjct: 82 INHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTH 141
Query: 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL- 182
Q + H++VATPGRL+D + K SL KY+VLDEADR+L+ FE + +I+
Sbjct: 142 SQIREVQMGCHLLVATPGRLVDFIEKNK-ISLEFCKYIVLDEADRMLDMGFEPQIRKIIE 200
Query: 183 -NVIPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQ 231
+ +P RQT +FSAT K+++KL L N + + ST D++KQ+
Sbjct: 201 ESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 141 bits (356), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 178/352 (50%), Gaps = 41/352 (11%)
Query: 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALP 65
K+F ELGL EL++ + ++ PSKIQ A+P L +++I +Q+G+GKT AF+L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 66 ILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124
+L + E A Q A L+P+RELA Q E + +G + ++V D +
Sbjct: 65 MLTRVNPEDASPQ-------AICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DSFE 115
Query: 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
+ + + ++V TPG ++D L K L +K VLDEAD +L D + D+ + V
Sbjct: 116 KNKQINAQ--VIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNML--DQQGLGDQCIRV 170
Query: 185 ---IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241
+P+ Q LFSAT V++ + + N +E + VD +KQ Y D
Sbjct: 171 KRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYM-------D 223
Query: 242 CY----LVYILTEV----SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRL 293
C +LTE+ + S+++F T +L L++ G + G + +R
Sbjct: 224 CKNEADKFDVLTELYGVMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 283
Query: 294 GALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIH 339
++ F+ G +LI T+V +RG+DIP+V MV+NYD+PT + YIH
Sbjct: 284 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 335
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 178/352 (50%), Gaps = 41/352 (11%)
Query: 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALP 65
K+F ELGL EL++ + ++ PSKIQ A+P L +++I +Q+G+GKT AF+L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 66 ILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124
+L + E A Q A L+P+RELA Q E + +G + ++V D +
Sbjct: 65 MLTRVNPEDASPQ-------AICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DSFE 115
Query: 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
+ + + ++V TPG ++D L K L +K VLDEAD +L D + D+ + V
Sbjct: 116 KNKQINAQ--VIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNML--DQQGLGDQCIRV 170
Query: 185 ---IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241
+P+ Q LFSAT V++ + + N +E + VD +KQ Y D
Sbjct: 171 KRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYM-------D 223
Query: 242 CY----LVYILTEV----SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRL 293
C +LTE+ + S+++F T +L L++ G + G + +R
Sbjct: 224 CKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 283
Query: 294 GALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIH 339
++ F+ G +LI T+V +RG+DIP+V MV+NYD+PT + YIH
Sbjct: 284 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 335
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 125/199 (62%), Gaps = 6/199 (3%)
Query: 15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIA 74
+ + ++A + +G+ ++IQ ++I LEG+DL+ A+TGSGKT AF +P ++ ++++
Sbjct: 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL- 119
Query: 75 ENQRTVP--AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKR 132
R +P +LSPTRELA+Q + L + +++GG + + LG
Sbjct: 120 ---RFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNG 176
Query: 133 PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTY 192
+I+VATPGRL+DH+ NT GF L+ LV+DEADR+L+ FE+ L +I+ ++P RQT
Sbjct: 177 INIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM 236
Query: 193 LFSATMTKKVKKLQRACLK 211
LFSAT T+KV+ L R LK
Sbjct: 237 LFSATQTRKVEDLARISLK 255
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 118/212 (55%), Gaps = 10/212 (4%)
Query: 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
V F ++ L++ L+ G++ PS IQ AI ++G D+I AQ+G+GKT FA+ I
Sbjct: 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISI 88
Query: 67 LQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
LQ L +E E Q A VL+PTRELA QI + ALG + C +GG ++ +
Sbjct: 89 LQQLEIEFKETQ-------ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE 141
Query: 126 TLAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
L + PHIVV TPGR+ D L N + S +K VLDEAD +L+ F+ + EI
Sbjct: 142 MQKLQAEAPHIVVGTPGRVFDML-NRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQK 200
Query: 185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 216
+ Q L SATM V ++ + +++P++I
Sbjct: 201 LNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 125/210 (59%), Gaps = 10/210 (4%)
Query: 10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
F++ L+ EL+ A + G++ PS++Q E IP A+ G D++ A++G GKT F L LQ
Sbjct: 16 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 75
Query: 70 LLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLA 128
LE Q +V V+ TRELA QIS+++E + +++ AV GG+ + +
Sbjct: 76 -LEPVTGQVSV-----LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 129
Query: 129 LGKR-PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIP 186
L K PHIVV TPGR++ L K +L +K+ +LDE D++L D + + EI + P
Sbjct: 130 LKKNCPHIVVGTPGRILA-LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 188
Query: 187 RMRQTYLFSATMTKKVKKLQRACLKNPVKI 216
+Q +FSAT++K+++ + R +++P++I
Sbjct: 189 HEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 126/211 (59%), Gaps = 14/211 (6%)
Query: 10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
F++ L+ EL+ +GW+ PS IQ E+IP AL G+D++ A+ G+GK+GA+ +P+L+
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 64
Query: 70 LLEIAENQRTVPAFFACVLSPTRELAIQISE---QFEALGSGISLRCAVLVGGVDMMQQT 126
L +N + A V+ PTRELA+Q+S+ Q G + GG ++
Sbjct: 65 LDLKKDNIQ------AMVIVPTRELALQVSQICIQVSKHMGGAKVMAT--TGGTNLRDDI 116
Query: 127 LALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185
+ L H+V+ATPGR++D + KG + + ++ +VLDEAD+LL+ DF + +++I+ +
Sbjct: 117 MRLDDTVHVVIATPGRILDLI--KKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 186 PRMRQTYLFSATMTKKVKKLQRACLKNPVKI 216
P+ RQ L+SAT V+K + L+ P +I
Sbjct: 175 PKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 169/320 (52%), Gaps = 27/320 (8%)
Query: 33 KIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90
KIQ +A+P L +++IG +Q+G+GKT AFAL +L + +VP A L+P
Sbjct: 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV------DASVPKPQAICLAP 197
Query: 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKR--PHIVVATPGRLMDHLT 148
+RELA QI + +G ++ A + + ++ G + IV+ TPG +MD L
Sbjct: 198 SRELARQIMDVVTEMGKYTEVKTAFGI------KDSVPKGAKIDAQIVIGTPGTVMD-LM 250
Query: 149 NTKGFSLGTLKYLVLDEADRLLNDDF--EKSLDEILNVIPRMRQTYLFSATMTKKVKKLQ 206
+ +K VLDEAD +L+ ++S+ I +++PR Q LFSAT +++V+K
Sbjct: 251 KRRQLDARDIKVFVLDEADNMLDQQGLGDQSM-RIKHLLPRNTQIVLFSATFSERVEKYA 309
Query: 207 RACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDA 265
N +I ++ +V+ +KQ Y ++ +K LV + ++ +++F + D
Sbjct: 310 ERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDT 369
Query: 266 TRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV 325
+A + G ++G++ ++R ++ F+ G +L+ T+V +RG+D+ V++V
Sbjct: 370 AEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLV 429
Query: 326 INYDIP------TNSKDYIH 339
+NYD+P + + Y+H
Sbjct: 430 VNYDMPLDQAGRPDPQTYLH 449
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 119/213 (55%), Gaps = 8/213 (3%)
Query: 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFA 63
+K V F ++ L ++L+ G++ PS IQ AI +EG D++ AQ+G+GKTG F+
Sbjct: 17 QKVVYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76
Query: 64 LPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123
+ LQ + +V A A +L+PTRELA+QI + AL + ++ +GG +
Sbjct: 77 IAALQRI------DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 130
Query: 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
+ L + IVV TPGR+ D++ + F +K +LDEAD +L+ F++ + +I
Sbjct: 131 EDAEGL-RDAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFT 188
Query: 184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 216
++P Q L SATM V ++ ++NPV+I
Sbjct: 189 LLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 221
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 118/213 (55%), Gaps = 8/213 (3%)
Query: 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFA 63
+K V F ++ L + L+ G++ PS IQ AI +EG D++ AQ+G+GKTG F+
Sbjct: 10 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 69
Query: 64 LPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123
+ LQ + +V A A +L+PTRELA+QI + AL + ++ +GG +
Sbjct: 70 IAALQRI------DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 123
Query: 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183
+ L + IVV TPGR+ D++ + F +K +LDEAD +L+ F++ + +I
Sbjct: 124 EDAEGL-RDAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFT 181
Query: 184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 216
++P Q L SATM V ++ ++NPV+I
Sbjct: 182 LLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 214
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 10/212 (4%)
Query: 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 66
V +F ++ L + L+ G++ PS IQ AI + G D+I AQ+G+G T FA+ I
Sbjct: 14 VDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISI 73
Query: 67 LQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125
LQ + L++ Q A VL+PTRELA QI ALG + C +GG ++ +
Sbjct: 74 LQQIELDLXATQ-------ALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAE 126
Query: 126 TLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
L + PHI+V TPGR+ D L N + S + VLDEAD +L+ F + +I
Sbjct: 127 VQXLQMEAPHIIVGTPGRVFDML-NRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQX 185
Query: 185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 216
+ Q L SATM V ++ +++P++I
Sbjct: 186 LNSNTQVVLLSATMPSDVLEVTXXFMRDPIRI 217
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
K V F E +++ + P+ IQA+ P AL G D++G+AQTGSGKT ++ L
Sbjct: 40 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 99
Query: 65 PIL-----QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
P + Q LE + VL+PTRELA Q+ + L+ + GG
Sbjct: 100 PAIVHINHQPFLERGDGP------ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGG 153
Query: 120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
Q L + I +ATPGRL+D L K +L YLVLDEADR+L+ FE +
Sbjct: 154 APKGPQIRDLERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIR 212
Query: 180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 216
+I++ I RQT ++SAT K+V++L LK+ + I
Sbjct: 213 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 249
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFAL 64
K V F E +++ + P+ IQA+ P AL G D++G+AQTGSGKT ++ L
Sbjct: 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 85
Query: 65 PIL-----QALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
P + Q LE + VL+PTRELA Q+ + L+ + GG
Sbjct: 86 PAIVHINHQPFLERGDGP------ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGG 139
Query: 120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
Q L + I +ATPGRL+D L K +L YLVLDEADR+L+ FE +
Sbjct: 140 APKGPQIRDLERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIR 198
Query: 180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 216
+I++ I RQT ++SAT K+V++L LK+ + I
Sbjct: 199 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 235
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 111/211 (52%), Gaps = 17/211 (8%)
Query: 10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 69
F + ++EA + + + P++IQ IP AL G+ +G +QTG+GKT A+ LPI +
Sbjct: 6 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEK 65
Query: 70 L-LEIAENQRTVPAFFACVLSPTRELAIQISEQ------FEALGSGISLRCAVLVGGVDM 122
+ E AE Q A + +PTRELA QI + F I RC L+GG D
Sbjct: 66 IKPERAEVQ-------AVITAPTRELATQIYHETLKITKFCPKDRXIVARC--LIGGTDK 116
Query: 123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182
+ L +PHIV+ TPGR+ D + + + T LV+DEAD L+ F +D+I
Sbjct: 117 QKALEKLNVQPHIVIGTPGRINDFI-REQALDVHTAHILVVDEADLXLDXGFITDVDQIA 175
Query: 183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNP 213
P+ Q +FSAT+ +K+K + +NP
Sbjct: 176 ARXPKDLQXLVFSATIPEKLKPFLKKYXENP 206
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 114/199 (57%), Gaps = 6/199 (3%)
Query: 18 ELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQAL--LEIAE 75
+L+++ VG P+ IQ++A P L+G DLI +AQTG+GKT ++ +P L I+
Sbjct: 30 DLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89
Query: 76 NQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHI 135
QR P VL+PTRELA+ + + S L+ + GG + Q + K I
Sbjct: 90 EQRNGPGML--VLTPTRELALHVEAECSKY-SYKGLKSICIYGGRNRNGQIEDISKGVDI 146
Query: 136 VVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195
++ATPGRL D L +L ++ YLV+DEAD++L+ +FE + +IL + RQT + S
Sbjct: 147 IIATPGRLND-LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTS 205
Query: 196 ATMTKKVKKLQRACLKNPV 214
AT V++L + LK+P+
Sbjct: 206 ATWPDTVRQLALSYLKDPM 224
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 10/210 (4%)
Query: 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP 65
E F+ L L ++E G++ PS +Q +AIP G DLI A++G+GKT F+
Sbjct: 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTI 81
Query: 66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQ 124
L +L + EN T +L+PTRE+A+QI A+G + L C V +GG + Q
Sbjct: 82 ALDSL--VLENLSTQ----ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQ 135
Query: 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILN 183
L K+ HI V +PGR+ L + G+++ +LDEAD+LL + F++ ++ I +
Sbjct: 136 DKTRL-KKCHIAVGSPGRI-KQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYS 193
Query: 184 VIPRMRQTYLFSATMTKKVKKLQRACLKNP 213
+P +Q SAT + + +++P
Sbjct: 194 SLPASKQMLAVSATYPEFLANALTKYMRDP 223
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 17/228 (7%)
Query: 7 VKTFKELG----LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62
+ TF++L + L++ + G++ P+ IQ +AIP L G++L+ A TGSGKT AF
Sbjct: 24 IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAF 83
Query: 63 ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV-GGVD 121
++PIL L + A F A ++SPTRELA QI + + G R ++ V
Sbjct: 84 SIPILMQLKQPANK-----GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVA 138
Query: 122 MMQQTLALGKRPHIVVATPGRLMDHL-TNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDE 180
+ K+ I+V TP RL+ L + G L ++++LV+DE+D+L D D+
Sbjct: 139 AKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQ 198
Query: 181 ILNVI-----PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 223
+ ++ ++R+ +FSAT V++ + L N + + ++ S
Sbjct: 199 LASIFLACTSHKVRRA-MFSATFAYDVEQWCKLNLDNVISVSIGARNS 245
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 17/213 (7%)
Query: 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGAFAL 64
VK+F+EL L+ +L++ +G+ PSKIQ A+P L ++LI +Q+G+GKT AF L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 65 PILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMM 123
A+L E P LSPT ELA+Q + E +G L+ A V G
Sbjct: 84 ----AMLSQVEPANKYPQ--CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG---- 133
Query: 124 QQTLALGKR--PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL-NDDFEKSLDE 180
L G++ IV+ TPG ++D + K +K VLDEAD ++ +
Sbjct: 134 -NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 192
Query: 181 ILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 213
I ++PR Q LFSAT V K + + +P
Sbjct: 193 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 225
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 108/214 (50%), Gaps = 19/214 (8%)
Query: 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGAFAL 64
VK+F+EL L+ +L++ +G+ PSKIQ A+P L ++LI +Q+G+GKT AF L
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 65 PILQALLEIAENQRTVPAFFACV-LSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDM 122
A+L E P C+ LSPT ELA+Q + E +G L+ A V G
Sbjct: 151 ----AMLSQVEPANKYP---QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG--- 200
Query: 123 MQQTLALGKR--PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD- 179
L G++ IV+ TPG ++D + K +K VLDEAD ++ +
Sbjct: 201 --NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258
Query: 180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP 213
I ++PR Q LFSAT V K + + +P
Sbjct: 259 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 292
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 112/216 (51%), Gaps = 20/216 (9%)
Query: 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALP 65
K+F ELGL EL++ + ++ PSKIQ A+P L +++I +Q+G+GKT AF+L
Sbjct: 22 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 81
Query: 66 ILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124
+L + E A Q A L+P+RELA Q E + +G + ++V D +
Sbjct: 82 MLTRVNPEDASPQ-------AICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DSFE 132
Query: 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184
+ + ++V TPG ++D L K L +K VLDEAD +L D + D+ + V
Sbjct: 133 KNKQINA--QVIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNML--DQQGLGDQCIRV 187
Query: 185 ---IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIE 217
+P+ Q LFSAT V++ + + N +E
Sbjct: 188 KRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLE 223
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%)
Query: 232 YRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSK 291
YR ++K LV++L + A+ ++VF R + LA LR G + G M Q K
Sbjct: 9 YRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGK 68
Query: 292 RLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXX 351
R A+ + G N+L+ TDVA+RG+DIP V V N+D+P + Y+H
Sbjct: 69 RNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKG 128
Query: 352 XXISLVNQYE 361
ISLV ++
Sbjct: 129 TAISLVEAHD 138
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303
L+Y+ S MVFTRT T +A L LG A + G MSQ +R + F+ GE
Sbjct: 22 LLYV---ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE 78
Query: 304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
+L+ TDVA+RGLDIP VD+V++Y +P ++ Y H
Sbjct: 79 VRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%)
Query: 247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
+L + S ++F RT + L L +LG I G M Q R +N+FK GE
Sbjct: 29 VLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRY 88
Query: 307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHXXXXXXXXXXXXXXISLVNQYELEWYL 366
L+ TDVA+RG+DI ++ +VINYD+P + Y+H IS V +E +
Sbjct: 89 LVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLA 148
Query: 367 QIEKLIG 373
IE+ IG
Sbjct: 149 DIEEYIG 155
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303
L+Y+ S MVFTRT T +A L LG A + G +SQ +R L F+ GE
Sbjct: 25 LLYV---ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE 81
Query: 304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
+L+ TDVA+RGLDIP VD+V++Y +P ++ Y H
Sbjct: 82 VRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 223 STVDTLKQQYRFVPAKYKDCYLVYILTEVSASS-TMVFTRTCDATRLLALMLRNLGQRAI 281
ST + + Q+ +V K +L+ +L S T+VF T L L + G
Sbjct: 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACT 74
Query: 282 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
I G SQ R AL++F++G+ IL+ T VA+RGLDI +V VIN+D+P++ ++Y+H
Sbjct: 75 SIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 132
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%)
Query: 224 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 283
T+ + Q Y +V + K L + + + + +++F + LLA + LG I
Sbjct: 15 TLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYI 74
Query: 284 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
M Q R + F+ G C L+CTD+ +RG+DI +V++VIN+D P ++ Y+H
Sbjct: 75 HAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH 130
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 18/125 (14%)
Query: 218 AASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 277
A S ++ V+ +K+Q + + YK ++F T T L +L+N
Sbjct: 13 ANSIFAAVEHIKKQIKERDSNYK---------------AIIFAPTVKFTSFLCSILKNEF 57
Query: 278 QRAIPI---SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 334
++ +PI G ++Q+KR + +FK E IL+CTDV +RG+D P+V V+ +P+
Sbjct: 58 KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSEL 117
Query: 335 KDYIH 339
+YIH
Sbjct: 118 ANYIH 122
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 18/125 (14%)
Query: 218 AASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 277
A S ++ V+ +K+Q + + YK ++F T T L +L+N
Sbjct: 13 ANSIFAAVEHIKKQIKERDSNYK---------------AIIFAPTVKFTSFLCSILKNEF 57
Query: 278 QRAIPI---SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 334
++ +PI G ++Q+KR + +FK E IL+CTDV +RG+D P+V V+ +P+
Sbjct: 58 KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSEL 117
Query: 335 KDYIH 339
+YIH
Sbjct: 118 ANYIH 122
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 18/125 (14%)
Query: 218 AASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 277
A S ++ V+ +K+Q + + YK ++F T T L +L+N
Sbjct: 13 ANSIFAAVEHIKKQIKERDSNYK---------------AIIFAPTVKFTSFLCSILKNEF 57
Query: 278 QRAIPI---SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 334
++ +PI G ++Q+KR + +FK E IL+CTDV +RG+D P+V V+ +P+
Sbjct: 58 KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSEL 117
Query: 335 KDYIH 339
+YIH
Sbjct: 118 ANYIH 122
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 230 QQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQ 289
Q+ +V + K YL+ L + + + D + +L G A+ I G Q
Sbjct: 32 QEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK-GVEAVAIHGGKDQ 90
Query: 290 SKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
+R A+ F+ G+ ++L+ TDVAS+GLD P++ VINYD+P ++Y+H
Sbjct: 91 EERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 140
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 228 LKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGH 286
+KQ Y V + YK L + +S + ++F T L LRN I
Sbjct: 4 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 63
Query: 287 MSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
+ Q +R + +F++G ILI TD+ +RG+D+ V +VINYD+P N ++YIH
Sbjct: 64 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 116
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 10/103 (9%)
Query: 247 ILTEV----SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
+LTE+ + S+++F T +L L++ G + G + +R ++ F+ G
Sbjct: 25 VLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG 84
Query: 303 ECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIH 339
+LI T+V +RG+DIP+V MV+NYD+PT + YIH
Sbjct: 85 RSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 127
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 21/136 (15%)
Query: 218 AASKYSTVDTLKQQYRFVPAKYKDCY----LVYILTEV----SASSTMVFTRTCDATRLL 269
A+ VD +KQ Y DC +LTE+ + S+++F T +L
Sbjct: 1 GATNEVNVDAIKQLY-------XDCKNEADKFDVLTELYGLXTIGSSIIFVATKKTANVL 53
Query: 270 ALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD 329
L++ G + G + +R ++ F+ G +LI T+V +RG+DIP+V V+NYD
Sbjct: 54 YGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYD 113
Query: 330 IPT------NSKDYIH 339
+PT + YIH
Sbjct: 114 LPTLANGQADPATYIH 129
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 247 ILTEV----SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302
+LTE+ + S+++F T +L L++ G + G + +R ++ F+ G
Sbjct: 26 VLTELYGVXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG 85
Query: 303 ECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIH 339
+LI T+V +RG+DIP+V V+NYD+PT + YIH
Sbjct: 86 RSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIH 128
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%)
Query: 228 LKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHM 287
L+Q Y + K+ L +L + + ++F ++ LA +L AI I M
Sbjct: 6 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 65
Query: 288 SQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339
Q +RL +FK + IL+ T++ RG+DI V++ NYD+P +S Y+H
Sbjct: 66 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 117
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 224 TVDTLKQQYRFVPAKYKDCY--LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI 281
T++ ++Q Y + KD Y L I ++ ++F +T + L + + G +
Sbjct: 4 TLNNIRQYYVLCEHR-KDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVS 62
Query: 282 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP 331
+SG ++ +R + +F+ G+ +LI T+V +RG+D+ V +V+N+D+P
Sbjct: 63 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLP 112
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 246 YILTEVSASSTMVFTRTCDATRLLALMLRN------LGQRAIPI--SGH------MSQSK 291
Y TE SA ++FT+T + L+ + +G +A + +GH M+Q++
Sbjct: 394 YTRTEESARG-IIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNE 452
Query: 292 RLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 334
+ ++KF+ G+ N+LI T VA GLDI ++VI Y + TN
Sbjct: 453 QKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 495
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 274 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD-IPT 332
R +GQ + +SQ ++ L++F GE N+L+ T V GLD+P VD+V+ Y+ +P+
Sbjct: 390 RFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPS 449
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 54 TGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRC 113
TG GKT L A++ IAE + T +L+PT+ L +Q +E F L + +
Sbjct: 32 TGLGKT-------LIAMM-IAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83
Query: 114 AVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND 172
L G +++ A R ++VATP + + L + SL + +V DEA R + +
Sbjct: 84 VALTGEKSPEERSKAWA-RAKVIVATPQTIENDLLAGR-ISLEDVSLIVFDEAHRAVGN 140
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 31/178 (17%)
Query: 169 LLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTL 228
ND+ EK E+L+ + ++ +F T+ + KK+ + +NP + E +T+
Sbjct: 83 FYNDEKEKKF-EVLSGSGSLDESDIFLXTLFLRNKKILKKLAENP-EYENEKLTKLRNTI 140
Query: 229 KQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRN------LGQRAIP 282
+ + TE SA ++FT+T + L+ + + +G +A
Sbjct: 141 XEHF--------------TRTEESARG-IIFTKTRQSAYALSQWITDNKKFAEVGVKAHH 185
Query: 283 I--SGHMS------QSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 332
+ +GH S Q+++ ++KF+ G+ N+LI T VA GLDI ++VI Y + T
Sbjct: 186 LIGAGHSSEFKPXTQNEQREVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVT 243
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 134/334 (40%), Gaps = 52/334 (15%)
Query: 24 ENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83
E G++ Q E I L G+D + + TG GK+ + +P L LL N TV
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL--LL----NGLTV--- 69
Query: 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL--GKRP---HIVVA 138
V+SP L +Q +A +G++ C + +Q L + G R ++
Sbjct: 70 ---VVSPLISLMKDQVDQLQA--NGVAAAC---LNSTQTREQQLEVMTGCRTGQIRLLYI 121
Query: 139 TPGRLM-----DHLTNTKGFSLGTLKYLVLDEADRL--LNDDFEKS------LDEILNVI 185
P RLM +HL + L +DEA + DF L + +
Sbjct: 122 APERLMLDNFLEHLAHWNPV------LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTL 175
Query: 186 PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK--DCY 243
P M T T + + +L L +P+ + S+ D +Y + K+K D
Sbjct: 176 PFMALTATADDTTRQDIVRL--LGLNDPL-----IQISSFDRPNIRYMLM-EKFKPLDQL 227
Query: 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303
+ Y+ E S +++ + A L++ G A + + R KF+ +
Sbjct: 228 MRYV-QEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD 286
Query: 304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 337
I++ T G++ P+V V+++DIP N + Y
Sbjct: 287 LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY 320
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 53/135 (39%), Gaps = 4/135 (2%)
Query: 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90
P Q E A +GK+ I A TG GKT L L + Q+ FFA +
Sbjct: 5 PRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPV 64
Query: 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT 150
+ A S FE LG I A + G + + I++ TP L+++L N
Sbjct: 65 YEQQATVFSRYFERLGYNI----ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG 120
Query: 151 KGFSLGTLKYLVLDE 165
SL + DE
Sbjct: 121 AIPSLSVFTLXIFDE 135
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 296 LNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTN 333
L F+A G+ NILI T VA G+DI ++VI Y+ N
Sbjct: 444 LEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGN 482
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 16/215 (7%)
Query: 1 MAEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHAL-EGKDLIGLAQTGSGKT 59
M E E ++L L ++E + G K + Q EA+ L EG L+ + TGSGKT
Sbjct: 1 MGLELEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKT 60
Query: 60 GAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119
+ I+ LL+ A ++P R L + F+ I + A+ G
Sbjct: 61 LIAEMGIISFLLKNGGK--------AIYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGD 111
Query: 120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179
D L K I++ T +L D L + L + Y VLDE LND +
Sbjct: 112 YDTDDAWL---KNYDIIITTYEKL-DSLWRHRPEWLNEVNYFVLDEL-HYLNDPERGPVV 166
Query: 180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV 214
E + + + R SAT++ K++ + PV
Sbjct: 167 ESVTIRAKRRNLLALSATIS-NYKQIAKWLGAEPV 200
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 135/331 (40%), Gaps = 46/331 (13%)
Query: 24 ENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83
E G++ Q E I L G+D + + TG GK+ + +P L LL N TV
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPAL--LL----NGLTV--- 69
Query: 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL--GKRP---HIVVA 138
V+SP L +Q +A +G++ C + +Q L + G R ++
Sbjct: 70 ---VVSPLISLXKDQVDQLQA--NGVAAAC---LNSTQTREQQLEVXTGCRTGQIRLLYI 121
Query: 139 TPGRL-----MDHLTNTKGFSLGTLKYLVLDEADRL--LNDDFEK---SLDEILNVIPRM 188
P RL ++HL + L +DEA + DF +L ++ P +
Sbjct: 122 APERLXLDNFLEHLAHWNPV------LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTL 175
Query: 189 RQTYL-FSATMTKKVKKLQRACLKNP-VKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246
L +A T + ++ L +P ++I + + + L ++++ + L
Sbjct: 176 PFXALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYXLXEKFKPLDQ------LXR 229
Query: 247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306
+ E S +++ + A L++ G A + + R KF+ + I
Sbjct: 230 YVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQI 289
Query: 307 LICTDVASRGLDIPSVDMVINYDIPTNSKDY 337
++ T G++ P+V V+++DIP N + Y
Sbjct: 290 VVATVAFGXGINKPNVRFVVHFDIPRNIESY 320
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90
P Q E A++GK+ I A TG GKT L L + + Q+ FFA +
Sbjct: 13 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 72
Query: 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT 150
+ S+ FE G ++ V + Q + + I++ TP L+++L
Sbjct: 73 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ----IVENNDIIILTPQILVNNLKKG 128
Query: 151 KGFSLGTLKYLVLDEA 166
SL ++ DE
Sbjct: 129 TIPSLSIFTLMIFDEC 144
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 296 LNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTN 333
L+ FKA G+ NILI T VA G+DI ++VI Y+ N
Sbjct: 452 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 490
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90
P Q E A++GK+ I A TG GKT L L + + Q+ FFA +
Sbjct: 14 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 73
Query: 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT 150
+ S+ FE G ++ V + Q + + I++ TP L+++L
Sbjct: 74 YEQNKSVFSKYFERHGYRVTGISGATAENVPVEQ----IVENNDIIILTPQILVNNLKKG 129
Query: 151 KGFSLGTLKYLVLDEA 166
SL ++ DE
Sbjct: 130 TIPSLSIFTLMIFDEC 145
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 296 LNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTN 333
L+ FKA G+ NILI T VA G+DI ++VI Y+ N
Sbjct: 453 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 491
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90
P Q E A++GK+ I A TG GKT L L + + Q+ FFA +
Sbjct: 5 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 64
Query: 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT 150
+ S+ FE G ++ V + Q + + I++ TP L+++L
Sbjct: 65 YEQNKSVFSKYFERHGYRVTGISGATAENVPVEQ----IVENNDIIILTPQILVNNLKKG 120
Query: 151 KGFSLGTLKYLVLDEA 166
SL ++ DE
Sbjct: 121 TIPSLSIFTLMIFDEC 136
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 296 LNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTN 333
L+ FKA G+ NILI T VA G+DI ++VI Y+ N
Sbjct: 444 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 482
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 285 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 326
G M + + +N F N+L+CT + G+DIP+ + +I
Sbjct: 846 GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 887
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 39/83 (46%)
Query: 255 STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVAS 314
S +++ + + + + L+NLG A ++ + K+ A E +++ T
Sbjct: 269 SGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFG 328
Query: 315 RGLDIPSVDMVINYDIPTNSKDY 337
G+D P V VI++ + + ++Y
Sbjct: 329 MGIDKPDVRFVIHHSMSKSMENY 351
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 110/296 (37%), Gaps = 50/296 (16%)
Query: 52 AQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISL 111
GSGKT + A L I +N F + PT LAIQ + S ++
Sbjct: 396 GDVGSGKT-------VVAQLAILDNYEA--GFQTAFMVPTSILAIQHYRRTVESFSKFNI 446
Query: 112 RCAVLVGGVDMMQ-QTLALGKRP---HIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167
A+L+G + + + G R +V+ T H + L +++DE
Sbjct: 447 HVALLIGATTPSEKEKIKSGLRNGQIDVVIGT------HALIQEDVHFKNLGLVIIDEQH 500
Query: 168 RLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK------VKKLQRACLKN--PVKIEAA 219
R F E L +M T + SAT + L + P + E
Sbjct: 501 R-----FGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQ 555
Query: 220 SKYSTVDTLKQQYRFVPAKY---KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL 276
+ +D + + Y FV + ++VY L E S + + M L
Sbjct: 556 TMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNV---------KSAVEMYEYL 606
Query: 277 GQRAIP------ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 326
+ P + G +SQ ++ + +F G +IL+ T V G+D+P ++++
Sbjct: 607 SKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV 662
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 17/156 (10%)
Query: 35 QAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94
QAEA+ GK+L+ T +GKT L E+A + + + + P R L
Sbjct: 30 QAEAVEKVFSGKNLLLAMPTAAGKT---------LLAEMAMVREAIKGGKSLYVVPLRAL 80
Query: 95 AIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS 154
A + E F+ I LR + G + + L ++ T D L +
Sbjct: 81 AGEKYESFKKW-EKIGLRIGISTGDYESRDEHLG----DCDIIVTTSEKADSLIRNRASW 135
Query: 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQ 190
+ + LV+DE LL+ + + EIL + +MR+
Sbjct: 136 IKAVSCLVVDEI-HLLDSEKRGATLEIL--VTKMRR 168
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 256 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 315
T+V T T L L+ G + + + +R+ + + G+ ++L+ ++
Sbjct: 447 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 506
Query: 316 GLDIPSVDMV 325
GLDIP V +V
Sbjct: 507 GLDIPEVSLV 516
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 256 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 315
T+V T T L L+ G + + + +R+ + + G+ ++L+ ++
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 316 GLDIPSVDMV 325
GLDIP V +V
Sbjct: 508 GLDIPEVSLV 517
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 256 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 315
T+V T T L L+ G + + + +R+ + + G+ ++L+ ++
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 316 GLDIPSVDMV 325
GLDIP V +V
Sbjct: 508 GLDIPEVSLV 517
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 256 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 315
T+V T T L L+ G + + + +R+ + + G+ ++L+ ++
Sbjct: 473 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 532
Query: 316 GLDIPSVDMV 325
GLDIP V +V
Sbjct: 533 GLDIPEVSLV 542
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 256 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 315
T+V T T L L+ G + + + +R+ + + G+ ++L+ ++
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 316 GLDIPSVDMV 325
GLDIP V +V
Sbjct: 508 GLDIPEVSLV 517
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 257 MVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 316
+V T T + L L+ +G + + + +R+ + + G+ ++L+ ++ G
Sbjct: 455 LVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 514
Query: 317 LDIPSVDMV 325
LDIP V +V
Sbjct: 515 LDIPEVSLV 523
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 257 MVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 316
+V T T + L L+ +G + + + +R+ + + G+ ++L+ ++ G
Sbjct: 449 LVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 508
Query: 317 LDIPSVDMV 325
LDIP V +V
Sbjct: 509 LDIPEVSLV 517
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 52 AQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV-LSPTRELAIQIS-EQFEALGSGI 109
A TGSGKT IL+ LL+ +E + CV ++P LA Q+ + +E +
Sbjct: 949 APTGSGKTICAEFAILRMLLQSSEGR--------CVYITPMEALAEQVYMDWYEKFQDRL 1000
Query: 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGR 142
+ + +L G + L G +I+++TP +
Sbjct: 1001 NKKVVLLTGETSTDLKLLGKG---NIIISTPEK 1030
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 52 AQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV-LSPTRELAIQIS-EQFEALGSGI 109
A TGSGKT IL+ LL+ +E + CV ++P LA Q+ + +E +
Sbjct: 949 APTGSGKTICAEFAILRMLLQSSEGR--------CVYITPMEALAEQVYMDWYEKFQDRL 1000
Query: 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGR 142
+ + +L G + L G +I+++TP +
Sbjct: 1001 NKKVVLLTGETSTDLKLLGKG---NIIISTPEK 1030
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%)
Query: 253 ASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV 312
T+V T L L G RA + + KR + + G + L+ ++
Sbjct: 440 GERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL 499
Query: 313 ASRGLDIPSVDMVINYD 329
GLDIP V +V D
Sbjct: 500 LREGLDIPEVSLVAILD 516
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%)
Query: 253 ASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV 312
T+V T L L G RA + + KR + + G + L+ ++
Sbjct: 439 GERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL 498
Query: 313 ASRGLDIPSVDMVINYD 329
GLDIP V +V D
Sbjct: 499 LREGLDIPEVSLVAILD 515
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,055,472
Number of Sequences: 62578
Number of extensions: 375033
Number of successful extensions: 1610
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 101
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)