Query 013727
Match_columns 437
No_of_seqs 242 out of 2739
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 06:46:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 1.1E-82 2.4E-87 553.5 34.9 409 3-417 56-464 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 7E-73 1.5E-77 524.6 35.0 376 9-385 92-473 (519)
3 KOG0340 ATP-dependent RNA heli 100.0 3.4E-72 7.4E-77 482.3 29.6 413 4-422 3-428 (442)
4 COG0513 SrmB Superfamily II DN 100.0 2.2E-68 4.8E-73 516.6 41.2 364 8-377 29-398 (513)
5 KOG0338 ATP-dependent RNA heli 100.0 1.6E-69 3.4E-74 486.0 30.3 361 8-371 181-544 (691)
6 PRK04837 ATP-dependent RNA hel 100.0 2.2E-67 4.8E-72 504.9 42.8 382 6-388 6-390 (423)
7 KOG0333 U5 snRNP-like RNA heli 100.0 3.1E-68 6.7E-73 479.3 32.4 371 3-374 240-638 (673)
8 KOG0328 Predicted ATP-dependen 100.0 7.7E-68 1.7E-72 441.9 26.5 374 5-385 24-398 (400)
9 PRK10590 ATP-dependent RNA hel 100.0 3.3E-66 7E-71 499.7 40.8 374 8-382 1-374 (456)
10 PTZ00110 helicase; Provisional 100.0 7.9E-66 1.7E-70 503.7 42.9 379 3-383 125-507 (545)
11 PRK11634 ATP-dependent RNA hel 100.0 6.6E-65 1.4E-69 501.0 45.5 372 6-384 4-376 (629)
12 PRK04537 ATP-dependent RNA hel 100.0 4.9E-65 1.1E-69 499.6 42.6 376 8-383 9-387 (572)
13 KOG0342 ATP-dependent RNA heli 100.0 1.1E-65 2.3E-70 460.5 34.6 372 7-383 81-457 (543)
14 PRK11776 ATP-dependent RNA hel 100.0 7.8E-65 1.7E-69 492.5 42.7 368 7-382 3-371 (460)
15 KOG0326 ATP-dependent RNA heli 100.0 9.3E-67 2E-71 442.6 20.6 368 7-382 84-451 (459)
16 PLN00206 DEAD-box ATP-dependen 100.0 3.2E-64 6.9E-69 491.3 41.5 377 3-381 116-496 (518)
17 PRK11192 ATP-dependent RNA hel 100.0 5.4E-64 1.2E-68 483.9 42.4 368 8-378 1-370 (434)
18 KOG0343 RNA Helicase [RNA proc 100.0 2.8E-64 6E-69 456.2 32.5 379 5-387 66-449 (758)
19 KOG0345 ATP-dependent RNA heli 100.0 5.5E-64 1.2E-68 446.6 33.3 361 7-368 3-372 (567)
20 PRK01297 ATP-dependent RNA hel 100.0 9.9E-62 2.2E-66 471.8 45.6 381 5-387 84-468 (475)
21 KOG0336 ATP-dependent RNA heli 100.0 9.8E-64 2.1E-68 437.5 26.6 376 4-381 215-593 (629)
22 KOG0348 ATP-dependent RNA heli 100.0 5.7E-63 1.2E-67 446.2 29.1 363 9-371 137-565 (708)
23 KOG0335 ATP-dependent RNA heli 100.0 7.1E-63 1.5E-67 449.9 28.8 376 4-380 70-464 (482)
24 KOG0346 RNA helicase [RNA proc 100.0 1.6E-61 3.6E-66 427.2 32.0 389 6-394 17-452 (569)
25 PTZ00424 helicase 45; Provisio 100.0 2.6E-60 5.7E-65 455.4 41.4 371 6-383 26-397 (401)
26 KOG0339 ATP-dependent RNA heli 100.0 6.9E-61 1.5E-65 430.0 32.7 386 2-389 217-604 (731)
27 KOG0341 DEAD-box protein abstr 100.0 4.3E-63 9.3E-68 430.7 15.6 376 4-381 166-550 (610)
28 KOG0347 RNA helicase [RNA proc 100.0 1.1E-61 2.4E-66 439.2 22.6 403 8-411 181-623 (731)
29 KOG0332 ATP-dependent RNA heli 100.0 3E-59 6.4E-64 404.9 26.2 367 6-381 88-465 (477)
30 KOG0334 RNA helicase [RNA proc 100.0 1.1E-58 2.5E-63 451.1 30.7 377 3-380 360-740 (997)
31 KOG0350 DEAD-box ATP-dependent 100.0 1.3E-56 2.9E-61 402.1 29.2 365 5-374 124-554 (620)
32 KOG0327 Translation initiation 100.0 5E-57 1.1E-61 394.3 25.3 371 6-385 24-395 (397)
33 TIGR03817 DECH_helic helicase/ 100.0 1.5E-54 3.3E-59 435.8 39.5 353 14-381 20-409 (742)
34 KOG0337 ATP-dependent RNA heli 100.0 7E-56 1.5E-60 389.6 21.1 365 7-377 20-385 (529)
35 KOG4284 DEAD box protein [Tran 100.0 1.4E-54 3E-59 399.6 22.8 356 5-368 22-388 (980)
36 PLN03137 ATP-dependent DNA hel 100.0 3.5E-51 7.5E-56 408.9 37.9 340 9-369 436-796 (1195)
37 TIGR00614 recQ_fam ATP-depende 100.0 4.5E-51 9.8E-56 395.5 35.3 324 25-370 6-343 (470)
38 KOG0344 ATP-dependent RNA heli 100.0 2.8E-51 6.1E-56 376.4 25.5 370 4-374 128-509 (593)
39 PRK11057 ATP-dependent DNA hel 100.0 2.9E-49 6.3E-54 392.4 37.2 332 14-368 8-351 (607)
40 PRK02362 ski2-like helicase; P 100.0 2.4E-48 5.3E-53 395.4 36.7 338 8-360 1-397 (737)
41 TIGR01389 recQ ATP-dependent D 100.0 3.4E-48 7.5E-53 386.2 35.2 325 21-368 3-339 (591)
42 PRK13767 ATP-dependent helicas 100.0 1.4E-47 3E-52 393.1 37.4 359 15-378 18-418 (876)
43 PRK00254 ski2-like helicase; P 100.0 6.4E-47 1.4E-51 384.1 35.8 332 9-361 2-389 (720)
44 TIGR00580 mfd transcription-re 100.0 9.2E-46 2E-50 375.5 36.6 320 15-360 436-770 (926)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.8E-45 6E-50 361.6 33.7 319 21-358 6-389 (844)
46 COG1201 Lhr Lhr-like helicases 100.0 6.1E-45 1.3E-49 357.2 34.9 336 15-359 8-361 (814)
47 KOG0329 ATP-dependent RNA heli 100.0 1.5E-47 3.3E-52 315.9 13.9 331 9-381 43-377 (387)
48 PRK10689 transcription-repair 100.0 1.3E-44 2.7E-49 374.8 37.8 326 8-359 579-918 (1147)
49 PRK01172 ski2-like helicase; P 100.0 6.6E-45 1.4E-49 368.0 32.7 331 8-360 1-378 (674)
50 PRK10917 ATP-dependent DNA hel 100.0 2.8E-44 6E-49 360.4 36.6 315 19-358 251-587 (681)
51 TIGR00643 recG ATP-dependent D 100.0 7.3E-44 1.6E-48 355.3 36.1 318 17-358 223-564 (630)
52 COG0514 RecQ Superfamily II DN 100.0 1.1E-44 2.3E-49 343.2 27.4 329 19-370 5-347 (590)
53 PRK09751 putative ATP-dependen 100.0 1.2E-42 2.6E-47 361.8 36.7 329 50-382 1-409 (1490)
54 PRK09401 reverse gyrase; Revie 100.0 3.2E-42 7E-47 357.7 36.3 288 21-332 71-410 (1176)
55 COG1111 MPH1 ERCC4-like helica 100.0 2E-40 4.3E-45 300.5 34.5 325 27-363 12-484 (542)
56 PHA02653 RNA helicase NPH-II; 100.0 1.1E-40 2.3E-45 327.6 31.6 318 32-369 166-523 (675)
57 PHA02558 uvsW UvsW helicase; P 100.0 1.2E-40 2.5E-45 324.4 28.4 299 29-351 113-443 (501)
58 PRK14701 reverse gyrase; Provi 100.0 2.8E-40 6E-45 350.1 31.6 323 17-361 66-457 (1638)
59 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.4E-39 3E-44 327.3 34.4 305 33-362 5-338 (819)
60 PRK12898 secA preprotein trans 100.0 4.3E-39 9.3E-44 311.2 31.3 321 25-363 99-589 (656)
61 TIGR01054 rgy reverse gyrase. 100.0 1.1E-38 2.3E-43 332.0 36.5 289 19-331 67-408 (1171)
62 PRK11664 ATP-dependent RNA hel 100.0 4.3E-39 9.4E-44 324.5 31.3 305 33-362 8-341 (812)
63 COG1202 Superfamily II helicas 100.0 2.3E-39 4.9E-44 296.0 24.5 337 8-360 194-553 (830)
64 COG1204 Superfamily II helicas 100.0 1.1E-38 2.3E-43 317.7 29.2 332 12-358 13-406 (766)
65 PRK09200 preprotein translocas 100.0 5E-38 1.1E-42 310.3 31.8 321 25-363 74-544 (790)
66 TIGR01587 cas3_core CRISPR-ass 100.0 2.7E-38 5.8E-43 298.2 27.1 298 47-360 1-336 (358)
67 COG1205 Distinct helicase fami 100.0 6.4E-38 1.4E-42 316.5 31.4 347 17-373 57-437 (851)
68 KOG0352 ATP-dependent DNA heli 100.0 1.2E-38 2.6E-43 281.5 20.3 332 18-369 6-371 (641)
69 TIGR03714 secA2 accessory Sec 100.0 1.7E-37 3.6E-42 303.6 30.2 321 26-363 67-540 (762)
70 TIGR00963 secA preprotein tran 100.0 2.2E-37 4.8E-42 300.8 30.3 322 25-364 52-521 (745)
71 PRK13766 Hef nuclease; Provisi 100.0 2.5E-36 5.5E-41 311.3 37.3 323 27-361 12-480 (773)
72 KOG0349 Putative DEAD-box RNA 100.0 5.2E-38 1.1E-42 278.0 20.3 365 8-373 2-628 (725)
73 COG1200 RecG RecG-like helicas 100.0 3.5E-36 7.7E-41 284.5 31.4 348 13-385 245-616 (677)
74 KOG0351 ATP-dependent DNA heli 100.0 3.5E-37 7.6E-42 308.8 24.9 334 18-370 251-602 (941)
75 TIGR03158 cas3_cyano CRISPR-as 100.0 4.9E-36 1.1E-40 279.4 30.9 290 34-345 1-357 (357)
76 KOG0354 DEAD-box like helicase 100.0 1.8E-36 4E-41 290.6 27.6 320 29-360 61-529 (746)
77 TIGR00603 rad25 DNA repair hel 100.0 3.8E-36 8.3E-41 294.1 27.6 307 30-364 255-611 (732)
78 KOG0353 ATP-dependent DNA heli 100.0 3.7E-35 8E-40 256.1 22.1 333 10-361 73-468 (695)
79 PRK11131 ATP-dependent RNA hel 100.0 4.6E-34 1E-38 292.9 29.3 302 32-363 76-414 (1294)
80 KOG0952 DNA/RNA helicase MER3/ 100.0 9.4E-34 2E-38 275.4 27.5 337 24-367 104-498 (1230)
81 PRK04914 ATP-dependent helicas 100.0 2E-33 4.4E-38 284.4 30.6 337 30-377 152-620 (956)
82 PRK05580 primosome assembly pr 100.0 2.1E-32 4.5E-37 273.7 37.3 308 30-360 144-549 (679)
83 COG1061 SSL2 DNA or RNA helica 100.0 4.6E-33 1E-37 265.7 26.0 290 30-347 36-376 (442)
84 COG1197 Mfd Transcription-repa 100.0 6.5E-32 1.4E-36 269.5 31.0 331 4-360 569-913 (1139)
85 cd00268 DEADc DEAD-box helicas 100.0 3.6E-32 7.8E-37 235.8 24.9 202 10-216 1-202 (203)
86 PRK09694 helicase Cas3; Provis 100.0 4.4E-31 9.4E-36 266.0 30.5 310 29-349 285-664 (878)
87 TIGR01967 DEAH_box_HrpA ATP-de 100.0 6.1E-31 1.3E-35 271.1 31.3 302 35-362 72-406 (1283)
88 TIGR00595 priA primosomal prot 100.0 8.6E-31 1.9E-35 253.0 30.3 286 49-357 1-378 (505)
89 PRK13104 secA preprotein trans 100.0 1.1E-30 2.3E-35 257.9 29.8 320 25-362 78-589 (896)
90 KOG0951 RNA helicase BRR2, DEA 100.0 5.6E-31 1.2E-35 259.4 25.7 343 14-364 295-706 (1674)
91 PRK12904 preprotein translocas 100.0 6.4E-30 1.4E-34 252.2 31.1 320 25-362 77-575 (830)
92 PRK12906 secA preprotein trans 100.0 3.2E-30 6.9E-35 253.3 27.1 320 25-362 76-555 (796)
93 PRK12899 secA preprotein trans 100.0 8.4E-30 1.8E-34 251.0 29.9 149 11-171 65-229 (970)
94 KOG0947 Cytoplasmic exosomal R 100.0 1.2E-29 2.6E-34 244.3 28.6 323 23-372 291-734 (1248)
95 PRK11448 hsdR type I restricti 100.0 2.9E-29 6.3E-34 259.9 30.3 303 30-349 413-802 (1123)
96 COG4098 comFA Superfamily II D 100.0 3.4E-28 7.4E-33 210.1 29.7 304 30-363 97-419 (441)
97 COG4581 Superfamily II RNA hel 100.0 8.4E-29 1.8E-33 247.2 28.1 317 23-360 113-537 (1041)
98 KOG0948 Nuclear exosomal RNA h 100.0 2.6E-29 5.7E-34 236.4 17.8 310 25-359 125-538 (1041)
99 PRK13107 preprotein translocas 100.0 3.5E-27 7.7E-32 232.3 26.8 320 25-362 78-593 (908)
100 KOG0950 DNA polymerase theta/e 100.0 2.4E-27 5.3E-32 229.9 24.1 338 15-368 207-619 (1008)
101 PLN03142 Probable chromatin-re 100.0 4E-26 8.7E-31 232.4 29.2 311 30-355 169-592 (1033)
102 PF00270 DEAD: DEAD/DEAH box h 100.0 3.9E-27 8.4E-32 198.2 18.0 165 32-204 1-168 (169)
103 COG1110 Reverse gyrase [DNA re 99.9 2.2E-24 4.7E-29 210.7 29.0 285 21-331 73-416 (1187)
104 COG1198 PriA Primosomal protei 99.9 3.8E-24 8.3E-29 209.7 28.6 309 30-361 198-604 (730)
105 COG1643 HrpA HrpA-like helicas 99.9 1.1E-24 2.3E-29 216.7 25.0 308 31-361 51-388 (845)
106 COG1203 CRISPR-associated heli 99.9 8.7E-25 1.9E-29 221.1 23.5 321 31-359 196-549 (733)
107 TIGR01407 dinG_rel DnaQ family 99.9 5.4E-23 1.2E-27 212.5 36.7 329 15-359 231-813 (850)
108 KOG0922 DEAH-box RNA helicase 99.9 1.1E-23 2.4E-28 198.1 22.9 307 32-362 53-392 (674)
109 TIGR00348 hsdR type I site-spe 99.9 6.6E-23 1.4E-27 205.4 29.6 298 31-347 239-634 (667)
110 PRK12326 preprotein translocas 99.9 1.9E-22 4.2E-27 194.5 29.2 320 25-362 74-549 (764)
111 PRK12900 secA preprotein trans 99.9 4.8E-23 1E-27 204.2 21.2 124 238-363 581-714 (1025)
112 TIGR00631 uvrb excinuclease AB 99.9 5.3E-22 1.1E-26 196.6 26.9 130 241-371 428-564 (655)
113 COG4096 HsdR Type I site-speci 99.9 2.8E-23 6.1E-28 199.9 17.0 294 30-347 165-525 (875)
114 KOG0385 Chromatin remodeling c 99.9 1.9E-21 4.1E-26 184.5 26.2 314 30-361 167-600 (971)
115 PRK07246 bifunctional ATP-depe 99.9 3.9E-20 8.5E-25 188.6 35.6 312 26-359 242-782 (820)
116 KOG0923 mRNA splicing factor A 99.9 2.7E-21 5.8E-26 180.7 23.8 311 26-359 261-605 (902)
117 KOG0920 ATP-dependent RNA heli 99.9 2.6E-21 5.6E-26 191.9 24.7 314 30-361 173-545 (924)
118 PRK13103 secA preprotein trans 99.9 3.7E-21 8.1E-26 190.2 25.6 320 25-362 78-593 (913)
119 KOG0949 Predicted helicase, DE 99.9 4.9E-21 1.1E-25 185.8 25.5 161 30-201 511-674 (1330)
120 COG0556 UvrB Helicase subunit 99.9 8.3E-21 1.8E-25 173.8 25.2 108 252-360 445-557 (663)
121 PRK05298 excinuclease ABC subu 99.9 5.7E-21 1.2E-25 190.8 25.5 142 241-383 432-589 (652)
122 smart00487 DEXDc DEAD-like hel 99.9 8.2E-21 1.8E-25 164.2 20.7 187 25-219 3-191 (201)
123 KOG1123 RNA polymerase II tran 99.9 1.2E-21 2.6E-26 177.5 14.5 311 30-367 302-660 (776)
124 KOG0924 mRNA splicing factor A 99.9 2.4E-20 5.2E-25 174.8 23.1 310 26-359 352-696 (1042)
125 PRK12903 secA preprotein trans 99.9 5.2E-20 1.1E-24 180.3 26.5 318 26-362 75-541 (925)
126 CHL00122 secA preprotein trans 99.9 2.3E-19 5E-24 176.8 26.1 130 25-168 72-207 (870)
127 PRK08074 bifunctional ATP-depe 99.9 1.6E-18 3.5E-23 180.1 33.0 108 252-359 751-892 (928)
128 KOG4150 Predicted ATP-dependen 99.9 3E-20 6.4E-25 171.0 17.7 367 21-397 277-679 (1034)
129 KOG0953 Mitochondrial RNA heli 99.8 3.3E-20 7.2E-25 170.4 17.3 283 46-377 192-490 (700)
130 KOG0384 Chromodomain-helicase 99.8 3.2E-20 6.8E-25 184.5 15.3 316 29-360 369-811 (1373)
131 KOG0387 Transcription-coupled 99.8 1E-18 2.2E-23 166.9 24.8 311 30-355 205-651 (923)
132 KOG0390 DNA repair protein, SN 99.8 4.1E-18 8.9E-23 166.6 26.4 319 30-357 238-702 (776)
133 TIGR03117 cas_csf4 CRISPR-asso 99.8 3.5E-17 7.7E-22 159.8 32.5 106 252-359 469-615 (636)
134 PRK12902 secA preprotein trans 99.8 1.1E-17 2.4E-22 164.8 27.8 130 26-169 82-217 (939)
135 KOG0392 SNF2 family DNA-depend 99.8 2.2E-18 4.8E-23 171.0 23.0 318 30-356 975-1448(1549)
136 KOG0925 mRNA splicing factor A 99.8 1.1E-17 2.3E-22 151.7 23.1 328 5-360 22-387 (699)
137 KOG0389 SNF2 family DNA-depend 99.8 4.4E-18 9.5E-23 162.5 21.5 322 26-361 396-889 (941)
138 COG4889 Predicted helicase [Ge 99.8 6.3E-19 1.4E-23 169.5 14.6 326 9-348 141-573 (1518)
139 KOG0926 DEAH-box RNA helicase 99.8 2.6E-18 5.6E-23 164.0 17.5 304 36-359 262-703 (1172)
140 cd00079 HELICc Helicase superf 99.8 1.7E-18 3.7E-23 138.9 13.9 118 239-356 12-131 (131)
141 KOG1000 Chromatin remodeling p 99.8 1.1E-17 2.4E-22 151.8 18.9 325 29-372 197-617 (689)
142 PF00271 Helicase_C: Helicase 99.8 8.2E-19 1.8E-23 126.6 8.2 78 271-348 1-78 (78)
143 cd00046 DEXDc DEAD-like helica 99.8 2.7E-17 5.8E-22 133.8 16.9 144 46-198 1-144 (144)
144 PRK11747 dinG ATP-dependent DN 99.8 3.1E-15 6.7E-20 151.0 32.5 104 252-359 533-673 (697)
145 PF04851 ResIII: Type III rest 99.7 1.9E-17 4.2E-22 141.1 12.8 153 30-199 3-183 (184)
146 COG1199 DinG Rad3-related DNA 99.7 1.8E-15 4E-20 153.8 29.0 104 252-358 478-615 (654)
147 KOG0951 RNA helicase BRR2, DEA 99.7 1.5E-15 3.2E-20 151.7 20.5 308 31-367 1144-1501(1674)
148 PRK12901 secA preprotein trans 99.7 8.9E-16 1.9E-20 153.1 18.8 109 252-362 627-743 (1112)
149 TIGR00604 rad3 DNA repair heli 99.7 2.7E-14 5.9E-19 145.4 28.5 74 26-105 6-83 (705)
150 PRK14873 primosome assembly pr 99.7 2E-14 4.3E-19 142.6 25.3 135 49-203 164-308 (665)
151 smart00490 HELICc helicase sup 99.6 6.7E-16 1.4E-20 112.7 8.6 81 268-348 2-82 (82)
152 KOG0386 Chromatin remodeling c 99.6 6.5E-15 1.4E-19 144.5 13.9 314 30-357 394-833 (1157)
153 TIGR02562 cas3_yersinia CRISPR 99.6 4.1E-14 9E-19 142.0 19.3 318 21-349 399-881 (1110)
154 PF02399 Herpes_ori_bp: Origin 99.6 2.1E-13 4.6E-18 133.6 23.1 286 46-359 50-387 (824)
155 COG0610 Type I site-specific r 99.6 1.8E-12 3.8E-17 134.5 27.8 310 46-374 274-665 (962)
156 KOG4439 RNA polymerase II tran 99.6 3.5E-13 7.5E-18 127.8 19.7 104 252-355 745-851 (901)
157 KOG0388 SNF2 family DNA-depend 99.6 7.6E-13 1.7E-17 125.6 21.2 116 240-355 1029-1147(1185)
158 KOG1002 Nucleotide excision re 99.6 1.2E-12 2.5E-17 119.6 21.4 110 252-361 637-750 (791)
159 PF06862 DUF1253: Protein of u 99.6 1.2E-11 2.6E-16 115.5 28.6 288 79-366 34-421 (442)
160 KOG0391 SNF2 family DNA-depend 99.5 7.1E-12 1.5E-16 124.7 22.5 117 240-356 1261-1381(1958)
161 PF07652 Flavi_DEAD: Flaviviru 99.5 5.5E-13 1.2E-17 103.6 10.4 137 44-202 3-140 (148)
162 COG0653 SecA Preprotein transl 99.4 6.8E-12 1.5E-16 124.0 16.8 317 26-360 77-545 (822)
163 COG0553 HepA Superfamily II DN 99.4 2.6E-11 5.6E-16 128.5 21.3 118 239-356 692-816 (866)
164 smart00489 DEXDc3 DEAD-like he 99.4 5E-12 1.1E-16 114.3 13.2 76 26-105 5-84 (289)
165 smart00488 DEXDc2 DEAD-like he 99.4 5E-12 1.1E-16 114.3 13.2 76 26-105 5-84 (289)
166 PF00176 SNF2_N: SNF2 family N 99.4 5.6E-12 1.2E-16 116.2 11.8 156 34-200 1-174 (299)
167 KOG2340 Uncharacterized conser 99.3 1.1E-10 2.4E-15 107.8 19.0 337 29-366 215-674 (698)
168 KOG1015 Transcription regulato 99.2 8.3E-10 1.8E-14 108.4 18.7 117 240-356 1127-1271(1567)
169 PF07517 SecA_DEAD: SecA DEAD- 99.2 4.6E-10 9.9E-15 98.7 14.5 132 25-170 73-210 (266)
170 KOG0921 Dosage compensation co 98.9 1.8E-08 3.8E-13 98.9 12.1 310 33-358 381-772 (1282)
171 PRK15483 type III restriction- 98.9 5.1E-08 1.1E-12 99.2 14.8 72 303-374 501-582 (986)
172 KOG1133 Helicase of the DEAD s 98.7 5.7E-05 1.2E-09 73.2 29.8 104 253-359 629-779 (821)
173 COG3587 Restriction endonuclea 98.7 1E-06 2.2E-11 86.8 17.5 72 303-374 483-567 (985)
174 KOG1802 RNA helicase nonsense 98.7 1.1E-07 2.5E-12 90.6 10.6 85 22-118 402-486 (935)
175 PF13086 AAA_11: AAA domain; P 98.7 1.6E-07 3.5E-12 83.1 11.0 74 30-104 1-75 (236)
176 KOG0952 DNA/RNA helicase MER3/ 98.7 1E-08 2.2E-13 102.4 2.8 257 31-303 928-1205(1230)
177 PF13307 Helicase_C_2: Helicas 98.6 2.5E-07 5.3E-12 76.9 8.5 107 251-359 7-149 (167)
178 PF13604 AAA_30: AAA domain; P 98.5 6.5E-07 1.4E-11 76.4 10.3 63 30-101 1-65 (196)
179 KOG1016 Predicted DNA helicase 98.5 7.6E-06 1.7E-10 79.7 18.2 110 253-362 719-849 (1387)
180 PF13872 AAA_34: P-loop contai 98.5 1.5E-06 3.2E-11 77.0 12.3 172 13-204 26-226 (303)
181 TIGR00596 rad1 DNA repair prot 98.5 1.1E-05 2.3E-10 82.5 19.0 68 131-199 6-73 (814)
182 PF02562 PhoH: PhoH-like prote 98.5 1.8E-07 3.8E-12 79.1 4.6 145 28-195 2-153 (205)
183 PF12340 DUF3638: Protein of u 98.4 4.7E-06 1E-10 71.1 10.7 126 9-145 4-143 (229)
184 TIGR01447 recD exodeoxyribonuc 98.3 7.5E-06 1.6E-10 81.3 13.6 142 32-195 147-293 (586)
185 PF13245 AAA_19: Part of AAA d 98.3 2.7E-06 5.9E-11 59.9 7.1 60 38-102 2-62 (76)
186 PRK10875 recD exonuclease V su 98.3 7.5E-06 1.6E-10 81.4 12.4 157 18-197 138-301 (615)
187 PRK10536 hypothetical protein; 98.3 3.1E-06 6.7E-11 73.7 8.5 147 26-193 55-208 (262)
188 TIGR01448 recD_rel helicase, p 98.3 1.4E-05 3E-10 81.7 14.5 128 25-195 319-450 (720)
189 KOG1803 DNA helicase [Replicat 98.3 5E-06 1.1E-10 79.2 10.1 65 30-103 185-250 (649)
190 TIGR00376 DNA helicase, putati 98.3 1.1E-05 2.4E-10 81.1 12.7 66 30-104 157-223 (637)
191 KOG1132 Helicase of the DEAD s 98.2 7.5E-06 1.6E-10 81.2 10.8 83 25-108 17-136 (945)
192 PF09848 DUF2075: Uncharacteri 98.2 3.8E-06 8.2E-11 78.9 8.6 108 47-184 3-117 (352)
193 KOG1001 Helicase-like transcri 98.1 1.5E-05 3.3E-10 79.6 10.6 102 254-355 540-643 (674)
194 COG3421 Uncharacterized protei 98.0 6.1E-05 1.3E-09 71.8 12.0 143 50-201 2-168 (812)
195 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00029 6.4E-09 72.5 14.9 64 26-99 349-413 (744)
196 PRK13889 conjugal transfer rel 97.9 0.00028 6.2E-09 73.7 14.7 64 25-98 342-406 (988)
197 smart00492 HELICc3 helicase su 97.9 0.00016 3.4E-09 57.9 9.9 93 266-358 4-136 (141)
198 PF00580 UvrD-helicase: UvrD/R 97.8 5.4E-05 1.2E-09 70.2 7.2 124 31-167 1-125 (315)
199 smart00491 HELICc2 helicase su 97.8 0.00016 3.5E-09 57.9 8.8 94 265-358 3-137 (142)
200 PRK12723 flagellar biosynthesi 97.8 0.00044 9.4E-09 65.0 12.7 121 46-200 175-299 (388)
201 PRK04296 thymidine kinase; Pro 97.8 0.00011 2.4E-09 62.4 8.1 36 46-90 3-38 (190)
202 PRK13826 Dtr system oriT relax 97.8 0.00072 1.6E-08 71.3 15.3 75 14-98 366-441 (1102)
203 PF13401 AAA_22: AAA domain; P 97.7 0.00017 3.8E-09 57.2 8.3 37 159-198 89-125 (131)
204 KOG1805 DNA replication helica 97.7 0.00024 5.3E-09 71.6 10.4 140 14-171 657-810 (1100)
205 KOG1131 RNA polymerase II tran 97.7 0.00047 1E-08 64.9 11.6 74 26-104 12-89 (755)
206 PRK06526 transposase; Provisio 97.7 0.00023 5E-09 63.2 9.4 24 42-65 95-118 (254)
207 COG1875 NYN ribonuclease and A 97.7 0.00027 5.9E-09 63.8 9.6 66 24-95 222-289 (436)
208 PRK14722 flhF flagellar biosyn 97.6 0.0004 8.7E-09 64.7 10.1 124 45-202 137-261 (374)
209 PRK11889 flhF flagellar biosyn 97.6 0.0011 2.3E-08 61.7 12.6 128 46-209 242-374 (436)
210 PF13871 Helicase_C_4: Helicas 97.6 0.00017 3.7E-09 63.9 7.1 57 294-350 52-116 (278)
211 PRK08181 transposase; Validate 97.6 0.001 2.2E-08 59.4 11.8 59 31-99 88-150 (269)
212 COG1419 FlhF Flagellar GTP-bin 97.6 0.00078 1.7E-08 62.4 11.1 123 45-201 203-326 (407)
213 COG2805 PilT Tfp pilus assembl 97.6 0.00026 5.6E-09 62.3 7.2 50 4-73 102-152 (353)
214 PF00448 SRP54: SRP54-type pro 97.6 0.0012 2.5E-08 56.3 11.1 48 156-203 82-130 (196)
215 PRK14974 cell division protein 97.5 0.0042 9.2E-08 57.3 14.9 130 46-209 141-275 (336)
216 KOG0989 Replication factor C, 97.4 0.00042 9.1E-09 61.2 6.9 44 154-198 126-169 (346)
217 cd00009 AAA The AAA+ (ATPases 97.4 0.0027 5.9E-08 51.1 11.6 17 45-61 19-35 (151)
218 PHA02533 17 large terminase pr 97.4 0.0016 3.4E-08 64.2 11.6 147 30-197 59-209 (534)
219 PRK05703 flhF flagellar biosyn 97.4 0.0032 6.9E-08 60.4 12.7 129 45-209 221-354 (424)
220 PRK06921 hypothetical protein; 97.3 0.0056 1.2E-07 54.9 13.1 45 45-98 117-161 (266)
221 smart00382 AAA ATPases associa 97.3 0.00076 1.7E-08 54.0 6.6 17 45-61 2-18 (148)
222 cd01124 KaiC KaiC is a circadi 97.2 0.0057 1.2E-07 51.8 11.4 49 48-106 2-50 (187)
223 PRK07952 DNA replication prote 97.2 0.0082 1.8E-07 52.9 12.2 45 156-200 161-207 (244)
224 PF05970 PIF1: PIF1-like helic 97.2 0.0017 3.7E-08 61.2 8.4 60 30-98 1-66 (364)
225 cd01120 RecA-like_NTPases RecA 97.1 0.0097 2.1E-07 49.0 12.0 44 155-198 83-136 (165)
226 PRK11054 helD DNA helicase IV; 97.1 0.0021 4.5E-08 65.4 9.1 80 29-115 195-274 (684)
227 PRK06835 DNA replication prote 97.1 0.0089 1.9E-07 55.2 12.0 59 31-99 161-227 (329)
228 TIGR01075 uvrD DNA helicase II 97.1 0.0023 5E-08 66.2 9.0 72 29-107 3-74 (715)
229 PRK10919 ATP-dependent DNA hel 97.1 0.0013 2.8E-08 67.2 7.0 70 30-106 2-71 (672)
230 PRK12377 putative replication 97.0 0.007 1.5E-07 53.4 10.6 46 46-101 102-147 (248)
231 PRK11773 uvrD DNA-dependent he 97.0 0.0025 5.5E-08 65.9 9.1 72 29-107 8-79 (721)
232 PRK12727 flagellar biosynthesi 97.0 0.023 4.9E-07 55.3 14.5 21 44-64 349-369 (559)
233 PRK08116 hypothetical protein; 97.0 0.01 2.2E-07 53.3 11.6 45 47-101 116-160 (268)
234 TIGR02760 TraI_TIGR conjugativ 97.0 0.05 1.1E-06 62.2 19.0 135 30-197 429-566 (1960)
235 PF00308 Bac_DnaA: Bacterial d 97.0 0.006 1.3E-07 53.1 9.5 108 46-202 35-144 (219)
236 PRK06731 flhF flagellar biosyn 96.9 0.026 5.6E-07 50.5 13.4 128 46-209 76-208 (270)
237 KOG0298 DEAD box-containing he 96.9 0.0034 7.3E-08 65.4 8.6 157 45-206 374-558 (1394)
238 TIGR01074 rep ATP-dependent DN 96.9 0.0053 1.1E-07 63.2 9.9 70 31-107 2-71 (664)
239 COG1435 Tdk Thymidine kinase [ 96.9 0.0045 9.7E-08 51.3 7.3 106 45-185 4-109 (201)
240 PRK08727 hypothetical protein; 96.9 0.0094 2E-07 52.5 9.9 17 46-62 42-58 (233)
241 COG3973 Superfamily I DNA and 96.8 0.0049 1.1E-07 59.5 8.3 92 14-108 188-286 (747)
242 PRK05642 DNA replication initi 96.8 0.0085 1.8E-07 52.8 9.4 44 157-200 97-141 (234)
243 COG1484 DnaC DNA replication p 96.8 0.009 1.9E-07 53.2 9.4 70 24-103 77-153 (254)
244 cd01122 GP4d_helicase GP4d_hel 96.8 0.0065 1.4E-07 55.0 8.7 79 18-105 3-81 (271)
245 PRK14723 flhF flagellar biosyn 96.8 0.0086 1.9E-07 60.9 10.0 130 46-209 186-317 (767)
246 PHA02544 44 clamp loader, smal 96.8 0.018 3.9E-07 53.4 11.7 39 157-195 100-138 (316)
247 PRK06893 DNA replication initi 96.8 0.0057 1.2E-07 53.7 7.8 45 156-200 90-136 (229)
248 PRK08084 DNA replication initi 96.8 0.0083 1.8E-07 52.9 8.8 42 158-199 98-141 (235)
249 PRK07003 DNA polymerase III su 96.8 0.011 2.3E-07 59.8 10.2 42 156-199 118-159 (830)
250 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.012 2.7E-07 51.5 9.9 19 44-62 37-55 (226)
251 PRK14712 conjugal transfer nic 96.7 0.013 2.8E-07 64.3 11.6 65 30-99 835-901 (1623)
252 PF03354 Terminase_1: Phage Te 96.7 0.0089 1.9E-07 58.7 9.7 71 33-108 1-80 (477)
253 PRK00771 signal recognition pa 96.7 0.022 4.8E-07 54.7 12.0 51 158-208 176-227 (437)
254 PRK12724 flagellar biosynthesi 96.7 0.031 6.8E-07 52.8 12.5 126 46-209 224-356 (432)
255 PRK14956 DNA polymerase III su 96.7 0.0083 1.8E-07 57.7 8.8 18 47-64 42-59 (484)
256 PRK12726 flagellar biosynthesi 96.7 0.015 3.3E-07 54.0 10.2 119 45-199 206-328 (407)
257 PRK14087 dnaA chromosomal repl 96.7 0.022 4.7E-07 55.3 11.7 110 46-202 142-253 (450)
258 PRK09183 transposase/IS protei 96.7 0.02 4.3E-07 51.2 10.7 24 42-65 99-122 (259)
259 PF14617 CMS1: U3-containing 9 96.7 0.0053 1.1E-07 53.8 6.6 85 81-167 125-211 (252)
260 PRK05973 replicative DNA helic 96.7 0.023 4.9E-07 49.7 10.5 83 13-106 23-115 (237)
261 PLN03025 replication factor C 96.6 0.036 7.8E-07 51.4 12.5 40 156-197 98-137 (319)
262 PRK14964 DNA polymerase III su 96.6 0.031 6.6E-07 54.4 12.3 43 155-199 114-156 (491)
263 PRK13709 conjugal transfer nic 96.6 0.021 4.5E-07 63.6 12.2 65 30-99 967-1033(1747)
264 TIGR00362 DnaA chromosomal rep 96.6 0.022 4.8E-07 54.8 11.3 37 46-89 137-173 (405)
265 TIGR01547 phage_term_2 phage t 96.6 0.011 2.3E-07 56.8 9.1 144 47-209 3-151 (396)
266 COG1444 Predicted P-loop ATPas 96.6 0.024 5.3E-07 57.2 11.7 160 12-200 196-358 (758)
267 TIGR01073 pcrA ATP-dependent D 96.6 0.0093 2E-07 62.0 9.3 72 29-107 3-74 (726)
268 TIGR01425 SRP54_euk signal rec 96.6 0.082 1.8E-06 50.4 14.5 131 47-209 102-235 (429)
269 PF05127 Helicase_RecD: Helica 96.6 0.00095 2.1E-08 55.1 1.3 124 49-199 1-124 (177)
270 PRK14721 flhF flagellar biosyn 96.6 0.045 9.8E-07 52.1 12.6 130 45-208 191-322 (420)
271 PRK00149 dnaA chromosomal repl 96.6 0.028 6.1E-07 54.9 11.7 46 46-99 149-194 (450)
272 PRK13894 conjugal transfer ATP 96.5 0.0056 1.2E-07 56.3 6.4 66 20-94 124-190 (319)
273 PRK13833 conjugal transfer pro 96.5 0.0068 1.5E-07 55.6 6.6 64 22-94 122-186 (323)
274 COG2256 MGS1 ATPase related to 96.5 0.013 2.9E-07 54.0 8.3 17 46-62 49-65 (436)
275 PRK08903 DnaA regulatory inact 96.5 0.027 5.8E-07 49.4 9.9 17 45-61 42-58 (227)
276 COG4962 CpaF Flp pilus assembl 96.5 0.0093 2E-07 54.1 6.9 61 27-97 154-215 (355)
277 PRK12323 DNA polymerase III su 96.4 0.028 6E-07 56.0 10.6 40 155-195 122-161 (700)
278 PF05876 Terminase_GpA: Phage 96.4 0.008 1.7E-07 59.9 7.1 126 30-171 16-148 (557)
279 TIGR02782 TrbB_P P-type conjug 96.4 0.0094 2E-07 54.4 7.0 66 20-94 108-174 (299)
280 PRK08533 flagellar accessory p 96.4 0.048 1E-06 47.8 11.2 54 43-106 22-75 (230)
281 PRK04195 replication factor C 96.4 0.041 8.8E-07 54.2 11.9 17 45-61 39-55 (482)
282 PF00004 AAA: ATPase family as 96.4 0.05 1.1E-06 42.8 10.5 14 48-61 1-14 (132)
283 PRK14958 DNA polymerase III su 96.4 0.042 9.1E-07 54.1 11.8 39 156-195 118-156 (509)
284 PRK11331 5-methylcytosine-spec 96.4 0.048 1E-06 52.0 11.5 32 31-62 180-211 (459)
285 PHA03333 putative ATPase subun 96.3 0.077 1.7E-06 52.9 12.9 69 31-107 170-241 (752)
286 PTZ00293 thymidine kinase; Pro 96.3 0.034 7.4E-07 47.4 9.2 39 45-92 4-42 (211)
287 PRK06995 flhF flagellar biosyn 96.3 0.026 5.6E-07 54.7 9.5 22 45-66 256-277 (484)
288 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.046 1E-06 48.3 10.5 53 45-107 21-73 (237)
289 PRK07764 DNA polymerase III su 96.2 0.065 1.4E-06 55.8 12.5 43 155-199 118-160 (824)
290 PRK14960 DNA polymerase III su 96.2 0.048 1E-06 54.5 10.9 41 156-198 117-157 (702)
291 PRK14088 dnaA chromosomal repl 96.2 0.076 1.6E-06 51.5 12.0 38 46-90 131-168 (440)
292 PRK11823 DNA repair protein Ra 96.1 0.042 9.1E-07 53.3 10.1 59 38-106 68-131 (446)
293 PRK14086 dnaA chromosomal repl 96.1 0.047 1E-06 54.2 10.5 47 156-202 376-424 (617)
294 TIGR00064 ftsY signal recognit 96.1 0.15 3.2E-06 45.9 12.9 47 156-202 153-206 (272)
295 PRK12422 chromosomal replicati 96.1 0.055 1.2E-06 52.4 10.8 49 156-204 201-251 (445)
296 PF13173 AAA_14: AAA domain 96.1 0.069 1.5E-06 42.0 9.7 39 157-199 61-99 (128)
297 PF05621 TniB: Bacterial TniB 96.1 0.075 1.6E-06 47.8 10.5 52 46-102 62-116 (302)
298 PHA03368 DNA packaging termina 96.1 0.06 1.3E-06 53.5 10.6 134 45-199 254-391 (738)
299 PRK05707 DNA polymerase III su 96.1 0.014 3.1E-07 53.9 6.3 35 30-64 3-41 (328)
300 CHL00181 cbbX CbbX; Provisiona 96.0 0.092 2E-06 47.7 11.3 19 45-63 59-77 (287)
301 PRK10917 ATP-dependent DNA hel 96.0 0.042 9.1E-07 56.5 10.0 79 252-330 309-392 (681)
302 cd01121 Sms Sms (bacterial rad 96.0 0.066 1.4E-06 50.4 10.5 52 45-106 82-133 (372)
303 PRK07994 DNA polymerase III su 96.0 0.13 2.7E-06 52.0 12.9 36 156-192 118-153 (647)
304 TIGR02881 spore_V_K stage V sp 96.0 0.068 1.5E-06 48.0 10.1 17 46-62 43-59 (261)
305 PRK08769 DNA polymerase III su 96.0 0.037 8E-07 50.8 8.4 37 28-64 2-45 (319)
306 PF06745 KaiC: KaiC; InterPro 95.9 0.023 5E-07 49.8 6.8 132 45-197 19-159 (226)
307 PRK10867 signal recognition pa 95.9 0.25 5.5E-06 47.4 14.2 20 47-66 102-121 (433)
308 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.093 2E-06 46.1 10.7 53 44-106 19-71 (229)
309 TIGR02785 addA_Gpos recombinat 95.9 0.02 4.3E-07 62.9 7.5 125 30-168 1-126 (1232)
310 KOG0739 AAA+-type ATPase [Post 95.9 0.17 3.7E-06 44.9 11.6 130 47-229 168-309 (439)
311 PRK14951 DNA polymerase III su 95.9 0.081 1.8E-06 53.1 11.0 42 155-198 122-163 (618)
312 PRK05580 primosome assembly pr 95.9 0.082 1.8E-06 54.3 11.3 78 252-330 189-267 (679)
313 PRK14961 DNA polymerase III su 95.9 0.04 8.6E-07 52.1 8.4 38 155-193 117-154 (363)
314 PRK09111 DNA polymerase III su 95.8 0.12 2.6E-06 51.9 12.0 40 155-195 130-169 (598)
315 PRK08691 DNA polymerase III su 95.8 0.12 2.6E-06 52.2 11.7 40 155-195 117-156 (709)
316 PTZ00112 origin recognition co 95.8 0.21 4.5E-06 51.6 13.3 23 48-71 784-806 (1164)
317 TIGR00959 ffh signal recogniti 95.8 0.34 7.3E-06 46.6 14.3 20 47-66 101-120 (428)
318 PF01695 IstB_IS21: IstB-like 95.8 0.021 4.6E-07 47.8 5.6 45 44-98 46-90 (178)
319 PF05496 RuvB_N: Holliday junc 95.8 0.026 5.7E-07 48.3 6.0 16 46-61 51-66 (233)
320 PRK06645 DNA polymerase III su 95.8 0.079 1.7E-06 52.0 10.2 19 46-64 44-62 (507)
321 TIGR02525 plasmid_TraJ plasmid 95.8 0.027 5.9E-07 52.8 6.8 26 45-71 149-174 (372)
322 TIGR02760 TraI_TIGR conjugativ 95.7 0.048 1E-06 62.3 9.7 64 30-98 1019-1084(1960)
323 TIGR03499 FlhF flagellar biosy 95.7 0.025 5.5E-07 51.3 6.3 19 46-64 195-213 (282)
324 COG4626 Phage terminase-like p 95.7 0.13 2.8E-06 49.9 11.1 147 30-196 61-223 (546)
325 TIGR00595 priA primosomal prot 95.7 0.085 1.8E-06 52.1 10.2 77 252-329 24-101 (505)
326 PRK12402 replication factor C 95.6 0.12 2.5E-06 48.4 10.7 40 156-197 124-163 (337)
327 PRK05563 DNA polymerase III su 95.6 0.037 8.1E-07 55.3 7.6 19 46-64 39-57 (559)
328 cd03115 SRP The signal recogni 95.6 0.91 2E-05 37.8 15.0 48 157-204 82-130 (173)
329 PRK14873 primosome assembly pr 95.6 0.11 2.4E-06 52.8 10.8 93 237-330 170-266 (665)
330 PRK14962 DNA polymerase III su 95.6 0.15 3.3E-06 49.7 11.4 17 47-63 38-54 (472)
331 PRK06067 flagellar accessory p 95.6 0.32 6.9E-06 42.9 12.5 52 45-106 25-76 (234)
332 TIGR00643 recG ATP-dependent D 95.5 0.072 1.6E-06 54.4 9.4 79 252-330 283-366 (630)
333 PRK05896 DNA polymerase III su 95.5 0.073 1.6E-06 52.9 9.0 18 46-63 39-56 (605)
334 PRK00411 cdc6 cell division co 95.5 0.26 5.6E-06 47.3 12.8 16 46-61 56-71 (394)
335 KOG0991 Replication factor C, 95.5 0.042 9E-07 46.9 6.1 38 154-192 110-147 (333)
336 PRK14949 DNA polymerase III su 95.5 0.1 2.3E-06 54.0 10.1 42 156-199 118-159 (944)
337 PRK14955 DNA polymerase III su 95.5 0.16 3.4E-06 48.7 11.0 18 47-64 40-57 (397)
338 TIGR02524 dot_icm_DotB Dot/Icm 95.4 0.034 7.4E-07 52.1 6.0 27 44-71 133-159 (358)
339 PRK14952 DNA polymerase III su 95.4 0.26 5.6E-06 49.3 12.4 40 155-195 116-155 (584)
340 PRK14965 DNA polymerase III su 95.4 0.21 4.6E-06 50.2 12.0 41 155-197 117-157 (576)
341 TIGR03878 thermo_KaiC_2 KaiC d 95.4 0.099 2.2E-06 46.8 8.7 53 44-105 35-90 (259)
342 COG2804 PulE Type II secretory 95.4 0.026 5.6E-07 54.0 5.1 39 32-71 243-283 (500)
343 PRK08939 primosomal protein Dn 95.3 0.17 3.7E-06 46.4 10.3 19 45-63 156-174 (306)
344 cd00561 CobA_CobO_BtuR ATP:cor 95.3 0.25 5.3E-06 40.3 10.0 54 154-207 92-147 (159)
345 COG0593 DnaA ATPase involved i 95.2 0.13 2.8E-06 48.6 9.2 47 157-203 175-223 (408)
346 PRK13851 type IV secretion sys 95.2 0.026 5.6E-07 52.5 4.7 43 43-95 160-202 (344)
347 cd00984 DnaB_C DnaB helicase C 95.2 0.14 3.1E-06 45.3 9.4 41 42-90 10-50 (242)
348 TIGR03015 pepcterm_ATPase puta 95.2 0.78 1.7E-05 41.3 14.3 32 30-61 23-59 (269)
349 PRK13342 recombination factor 95.2 0.12 2.6E-06 49.8 9.4 17 46-62 37-53 (413)
350 PRK13341 recombination factor 95.2 0.12 2.6E-06 53.2 9.6 17 46-62 53-69 (725)
351 COG0470 HolB ATPase involved i 95.2 0.076 1.6E-06 49.4 7.8 41 155-197 107-147 (325)
352 TIGR00708 cobA cob(I)alamin ad 95.2 0.18 3.9E-06 41.6 8.9 54 155-208 95-150 (173)
353 PRK10436 hypothetical protein; 95.2 0.048 1E-06 52.8 6.5 37 33-70 204-242 (462)
354 PRK08699 DNA polymerase III su 95.1 0.27 5.9E-06 45.5 11.0 34 31-64 2-40 (325)
355 PF13177 DNA_pol3_delta2: DNA 95.1 0.1 2.2E-06 43.0 7.4 43 156-199 101-143 (162)
356 TIGR02655 circ_KaiC circadian 95.1 0.18 4E-06 49.6 10.4 62 36-107 249-315 (484)
357 TIGR02928 orc1/cdc6 family rep 95.1 0.25 5.4E-06 46.8 11.1 24 46-70 41-64 (365)
358 PF03237 Terminase_6: Terminas 95.1 0.63 1.4E-05 44.1 13.9 144 49-212 1-153 (384)
359 PRK13900 type IV secretion sys 95.1 0.067 1.5E-06 49.6 6.8 42 43-94 158-199 (332)
360 PRK08451 DNA polymerase III su 95.0 0.17 3.6E-06 49.9 9.7 40 155-195 115-154 (535)
361 PRK14959 DNA polymerase III su 95.0 0.076 1.6E-06 53.1 7.3 19 46-64 39-57 (624)
362 TIGR03819 heli_sec_ATPase heli 95.0 0.045 9.8E-07 50.9 5.5 74 9-94 143-217 (340)
363 TIGR02688 conserved hypothetic 95.0 0.27 5.8E-06 46.6 10.4 51 14-64 171-228 (449)
364 KOG0738 AAA+-type ATPase [Post 94.9 0.083 1.8E-06 48.7 6.8 57 5-61 180-261 (491)
365 PRK14963 DNA polymerase III su 94.9 0.13 2.8E-06 50.7 8.7 17 47-63 38-54 (504)
366 PRK14954 DNA polymerase III su 94.9 0.29 6.3E-06 49.4 11.3 19 46-64 39-57 (620)
367 COG2909 MalT ATP-dependent tra 94.9 0.091 2E-06 53.3 7.6 43 158-200 130-172 (894)
368 TIGR02880 cbbX_cfxQ probable R 94.9 0.15 3.3E-06 46.3 8.6 18 45-62 58-75 (284)
369 PHA00012 I assembly protein 94.9 0.8 1.7E-05 41.7 12.6 24 48-71 4-27 (361)
370 TIGR03600 phage_DnaB phage rep 94.8 0.41 8.8E-06 46.4 11.9 68 27-103 176-243 (421)
371 PRK14969 DNA polymerase III su 94.8 0.24 5.1E-06 49.3 10.3 40 155-195 117-156 (527)
372 COG1474 CDC6 Cdc6-related prot 94.8 0.18 3.9E-06 47.4 9.0 17 46-62 43-59 (366)
373 PRK05986 cob(I)alamin adenolsy 94.8 0.12 2.6E-06 43.3 6.9 145 44-208 21-168 (191)
374 COG1198 PriA Primosomal protei 94.8 0.18 3.9E-06 51.4 9.4 95 233-328 223-320 (730)
375 COG1110 Reverse gyrase [DNA re 94.7 0.11 2.3E-06 53.8 7.7 72 242-313 114-191 (1187)
376 PF05729 NACHT: NACHT domain 94.7 0.27 5.8E-06 40.4 9.1 16 47-62 2-17 (166)
377 PRK14957 DNA polymerase III su 94.7 0.15 3.3E-06 50.5 8.5 40 155-195 117-156 (546)
378 TIGR02533 type_II_gspE general 94.7 0.056 1.2E-06 53.0 5.5 36 23-61 221-258 (486)
379 PRK07133 DNA polymerase III su 94.7 0.13 2.8E-06 52.3 8.2 17 47-63 42-58 (725)
380 TIGR03880 KaiC_arch_3 KaiC dom 94.7 0.24 5.1E-06 43.3 9.1 52 45-106 16-67 (224)
381 PRK13764 ATPase; Provisional 94.7 0.082 1.8E-06 52.7 6.7 25 45-70 257-281 (602)
382 PRK07471 DNA polymerase III su 94.7 0.22 4.7E-06 47.0 9.2 42 155-197 139-180 (365)
383 COG1200 RecG RecG-like helicas 94.7 0.22 4.8E-06 49.5 9.5 88 243-330 300-393 (677)
384 PRK07940 DNA polymerase III su 94.7 0.25 5.3E-06 47.1 9.6 45 155-201 115-159 (394)
385 PRK06964 DNA polymerase III su 94.6 0.16 3.5E-06 47.1 8.2 34 31-64 2-40 (342)
386 TIGR00416 sms DNA repair prote 94.6 0.22 4.7E-06 48.5 9.4 52 45-106 94-145 (454)
387 PRK14950 DNA polymerase III su 94.6 0.74 1.6E-05 46.6 13.5 41 155-197 118-158 (585)
388 PRK06620 hypothetical protein; 94.6 0.094 2E-06 45.4 6.2 16 46-61 45-60 (214)
389 TIGR00580 mfd transcription-re 94.6 0.12 2.7E-06 54.6 8.0 78 252-329 499-581 (926)
390 PRK14948 DNA polymerase III su 94.5 0.24 5.2E-06 50.1 9.8 18 46-63 39-56 (620)
391 PRK06871 DNA polymerase III su 94.5 0.083 1.8E-06 48.7 5.9 34 31-64 3-43 (325)
392 COG3972 Superfamily I DNA and 94.5 0.088 1.9E-06 50.0 6.0 69 30-106 162-230 (660)
393 COG0466 Lon ATP-dependent Lon 94.5 0.14 2.9E-06 51.2 7.5 49 134-186 397-446 (782)
394 KOG1513 Nuclear helicase MOP-3 94.5 0.023 4.9E-07 56.7 2.2 54 296-349 850-911 (1300)
395 COG1219 ClpX ATP-dependent pro 94.4 0.032 6.8E-07 49.9 2.8 62 8-71 44-121 (408)
396 KOG0732 AAA+-type ATPase conta 94.4 0.082 1.8E-06 55.3 6.1 55 6-61 260-315 (1080)
397 PRK00440 rfc replication facto 94.4 0.67 1.5E-05 42.9 11.9 38 157-195 102-139 (319)
398 TIGR02012 tigrfam_recA protein 94.4 0.087 1.9E-06 48.3 5.6 43 45-96 55-97 (321)
399 COG5008 PilU Tfp pilus assembl 94.4 0.038 8.3E-07 48.1 3.1 14 48-61 130-143 (375)
400 PRK04841 transcriptional regul 94.3 0.41 8.9E-06 51.5 11.7 42 158-199 122-163 (903)
401 PHA00729 NTP-binding motif con 94.3 0.7 1.5E-05 40.0 10.8 16 47-62 19-34 (226)
402 PF03796 DnaB_C: DnaB-like hel 94.3 0.18 3.8E-06 45.3 7.6 116 43-171 17-144 (259)
403 PRK03992 proteasome-activating 94.3 0.16 3.5E-06 48.5 7.6 16 46-61 166-181 (389)
404 PRK06904 replicative DNA helic 94.3 0.68 1.5E-05 45.3 12.0 133 27-171 203-348 (472)
405 KOG1513 Nuclear helicase MOP-3 94.3 0.05 1.1E-06 54.4 4.1 161 30-200 264-456 (1300)
406 KOG0701 dsRNA-specific nucleas 94.3 0.026 5.6E-07 61.5 2.3 102 247-348 286-399 (1606)
407 TIGR01420 pilT_fam pilus retra 94.2 0.11 2.4E-06 48.6 6.3 17 45-61 122-138 (343)
408 cd01129 PulE-GspE PulE/GspE Th 94.2 0.1 2.2E-06 46.8 5.7 37 22-61 58-96 (264)
409 PHA00350 putative assembly pro 94.2 0.35 7.5E-06 45.7 9.3 17 48-64 4-20 (399)
410 PF01443 Viral_helicase1: Vira 94.1 0.076 1.6E-06 46.7 4.8 14 48-61 1-14 (234)
411 PRK10416 signal recognition pa 94.1 1.5 3.2E-05 40.6 13.2 46 156-201 195-247 (318)
412 PF06733 DEAD_2: DEAD_2; Inte 94.1 0.031 6.8E-07 46.7 2.1 46 126-171 113-159 (174)
413 KOG2028 ATPase related to the 94.1 0.14 3E-06 46.8 6.1 49 46-103 163-211 (554)
414 TIGR00678 holB DNA polymerase 94.1 0.46 1E-05 40.2 9.3 41 155-197 94-134 (188)
415 PRK09112 DNA polymerase III su 94.1 0.25 5.5E-06 46.2 8.2 40 155-195 139-178 (351)
416 TIGR01241 FtsH_fam ATP-depende 94.0 0.39 8.5E-06 47.6 10.0 54 5-61 49-104 (495)
417 PRK07993 DNA polymerase III su 94.0 0.08 1.7E-06 49.2 4.7 34 31-64 3-43 (334)
418 PRK13695 putative NTPase; Prov 93.9 0.74 1.6E-05 38.4 10.2 17 47-63 2-18 (174)
419 PRK14953 DNA polymerase III su 93.9 0.56 1.2E-05 46.1 10.6 41 155-197 117-157 (486)
420 PRK09354 recA recombinase A; P 93.9 0.31 6.7E-06 45.2 8.2 51 37-96 46-102 (349)
421 PRK04328 hypothetical protein; 93.8 0.14 3E-06 45.6 5.8 54 44-107 22-75 (249)
422 COG1618 Predicted nucleotide k 93.8 0.1 2.2E-06 41.9 4.3 118 46-184 6-129 (179)
423 TIGR02868 CydC thiol reductant 93.8 0.26 5.6E-06 49.4 8.3 41 155-195 486-526 (529)
424 cd01130 VirB11-like_ATPase Typ 93.7 0.13 2.7E-06 43.6 5.2 37 23-61 4-41 (186)
425 TIGR01243 CDC48 AAA family ATP 93.7 0.46 1E-05 49.6 10.1 51 8-61 175-228 (733)
426 TIGR02397 dnaX_nterm DNA polym 93.7 0.25 5.3E-06 46.7 7.6 17 46-62 37-53 (355)
427 PF00437 T2SE: Type II/IV secr 93.6 0.11 2.3E-06 47.0 4.8 52 33-94 114-167 (270)
428 TIGR00767 rho transcription te 93.6 0.3 6.6E-06 46.0 7.7 19 43-61 166-184 (415)
429 TIGR00665 DnaB replicative DNA 93.6 0.42 9.1E-06 46.5 9.1 116 42-170 192-318 (434)
430 COG2109 BtuR ATP:corrinoid ade 93.5 0.55 1.2E-05 38.9 8.2 55 155-209 120-176 (198)
431 PF03969 AFG1_ATPase: AFG1-lik 93.5 1 2.3E-05 42.3 11.2 44 157-201 127-171 (362)
432 TIGR00614 recQ_fam ATP-depende 93.5 3.8 8.2E-05 40.4 15.7 78 252-329 50-135 (470)
433 COG0552 FtsY Signal recognitio 93.5 3.7 8E-05 37.6 14.0 127 47-208 141-279 (340)
434 CHL00176 ftsH cell division pr 93.4 0.7 1.5E-05 47.0 10.6 16 46-61 217-232 (638)
435 cd01128 rho_factor Transcripti 93.4 0.25 5.4E-06 43.8 6.6 19 42-60 13-31 (249)
436 TIGR02538 type_IV_pilB type IV 93.4 0.12 2.6E-06 51.9 5.1 44 23-70 295-340 (564)
437 PRK09087 hypothetical protein; 93.4 0.27 5.9E-06 43.0 6.8 16 46-61 45-60 (226)
438 PHA03372 DNA packaging termina 93.4 0.72 1.6E-05 45.5 10.0 125 46-197 203-336 (668)
439 PRK10689 transcription-repair 93.3 0.29 6.3E-06 53.2 8.1 77 252-328 648-729 (1147)
440 PRK06647 DNA polymerase III su 93.3 0.73 1.6E-05 46.1 10.4 18 46-63 39-56 (563)
441 PRK06090 DNA polymerase III su 93.3 0.56 1.2E-05 43.2 8.8 34 30-63 3-43 (319)
442 PRK14971 DNA polymerase III su 93.2 0.53 1.1E-05 47.7 9.3 41 155-197 119-159 (614)
443 TIGR00763 lon ATP-dependent pr 93.2 0.63 1.4E-05 48.8 10.2 17 45-61 347-363 (775)
444 KOG0652 26S proteasome regulat 93.1 0.33 7.2E-06 42.3 6.6 16 46-61 206-221 (424)
445 PHA02535 P terminase ATPase su 93.1 3 6.5E-05 41.4 13.9 87 14-108 122-208 (581)
446 PRK08840 replicative DNA helic 93.1 1.4 3E-05 43.1 11.7 69 27-104 199-267 (464)
447 PF01637 Arch_ATPase: Archaeal 93.0 0.13 2.8E-06 45.0 4.4 41 159-199 120-166 (234)
448 KOG0742 AAA+-type ATPase [Post 93.0 0.17 3.8E-06 46.9 5.0 16 46-61 385-400 (630)
449 cd01126 TraG_VirD4 The TraG/Tr 93.0 0.05 1.1E-06 52.0 1.7 48 47-105 1-48 (384)
450 TIGR02858 spore_III_AA stage I 92.9 0.61 1.3E-05 41.9 8.4 25 37-61 100-127 (270)
451 PRK11034 clpA ATP-dependent Cl 92.9 0.98 2.1E-05 46.9 10.9 18 45-62 207-224 (758)
452 TIGR01243 CDC48 AAA family ATP 92.9 0.4 8.7E-06 50.0 8.3 16 46-61 488-503 (733)
453 PRK09376 rho transcription ter 92.9 0.42 9.2E-06 44.9 7.5 18 44-61 168-185 (416)
454 PF03266 NTPase_1: NTPase; In 92.9 0.082 1.8E-06 43.8 2.6 28 156-183 94-123 (168)
455 cd01131 PilT Pilus retraction 92.8 0.17 3.6E-06 43.3 4.5 14 48-61 4-17 (198)
456 PF12846 AAA_10: AAA-like doma 92.8 0.19 4.1E-06 46.1 5.3 42 46-96 2-43 (304)
457 COG0467 RAD55 RecA-superfamily 92.8 0.23 5E-06 44.6 5.6 56 44-109 22-77 (260)
458 PRK08506 replicative DNA helic 92.8 0.82 1.8E-05 44.9 9.7 117 41-171 188-316 (472)
459 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.7 0.33 7.1E-06 39.1 5.9 41 155-198 86-126 (144)
460 COG1132 MdlB ABC-type multidru 92.7 0.24 5.2E-06 50.1 6.2 39 155-193 481-519 (567)
461 PRK07004 replicative DNA helic 92.7 0.69 1.5E-05 45.2 9.0 120 37-170 205-337 (460)
462 COG0630 VirB11 Type IV secreto 92.6 0.27 5.9E-06 45.2 5.9 59 24-94 123-182 (312)
463 PF10593 Z1: Z1 domain; Inter 92.6 0.65 1.4E-05 40.8 8.0 97 268-370 102-203 (239)
464 COG0513 SrmB Superfamily II DN 92.5 0.62 1.3E-05 46.3 8.6 68 256-327 102-180 (513)
465 PF02534 T4SS-DNA_transf: Type 92.4 0.093 2E-06 51.6 2.8 50 46-106 45-94 (469)
466 PF02572 CobA_CobO_BtuR: ATP:c 92.4 0.87 1.9E-05 37.6 8.0 54 154-207 93-148 (172)
467 PRK05595 replicative DNA helic 92.4 0.91 2E-05 44.3 9.5 55 42-105 198-252 (444)
468 PF04665 Pox_A32: Poxvirus A32 92.4 0.24 5.2E-06 43.4 4.9 40 42-90 9-49 (241)
469 cd01393 recA_like RecA is a b 92.3 0.47 1E-05 41.5 6.8 45 45-92 19-63 (226)
470 KOG0331 ATP-dependent RNA heli 92.3 1.3 2.9E-05 43.1 10.1 90 253-346 165-272 (519)
471 TIGR02639 ClpA ATP-dependent C 92.3 1.5 3.2E-05 45.9 11.3 17 46-62 204-220 (731)
472 KOG1132 Helicase of the DEAD s 92.1 4.8 0.0001 41.5 14.0 79 253-332 561-656 (945)
473 TIGR02655 circ_KaiC circadian 92.1 0.28 6.1E-06 48.3 5.7 56 44-108 20-75 (484)
474 PRK08006 replicative DNA helic 92.1 2.3 5E-05 41.6 11.9 119 39-170 218-349 (471)
475 COG0210 UvrD Superfamily I DNA 92.1 0.38 8.2E-06 49.6 6.9 71 30-107 2-72 (655)
476 PF10412 TrwB_AAD_bind: Type I 92.0 0.22 4.7E-06 47.5 4.7 46 43-97 13-58 (386)
477 PRK13897 type IV secretion sys 92.0 0.12 2.6E-06 51.8 3.0 50 46-106 159-208 (606)
478 PRK06305 DNA polymerase III su 92.0 1.1 2.3E-05 43.7 9.4 18 46-63 40-57 (451)
479 KOG0744 AAA+-type ATPase [Post 92.0 1.6 3.5E-05 39.6 9.5 70 46-119 178-258 (423)
480 COG4555 NatA ABC-type Na+ tran 92.0 0.46 1E-05 39.9 5.8 55 155-209 149-203 (245)
481 PRK14970 DNA polymerase III su 92.0 2 4.2E-05 40.8 11.1 17 46-62 40-56 (367)
482 TIGR03743 SXT_TraD conjugative 92.0 0.5 1.1E-05 48.0 7.3 54 46-108 177-232 (634)
483 PRK14701 reverse gyrase; Provi 91.9 0.68 1.5E-05 52.1 8.8 61 252-312 121-187 (1638)
484 KOG0298 DEAD box-containing he 91.9 0.34 7.4E-06 51.3 6.1 97 252-352 1220-1316(1394)
485 PRK08760 replicative DNA helic 91.9 0.94 2E-05 44.4 9.0 114 43-170 227-352 (476)
486 TIGR02788 VirB11 P-type DNA tr 91.9 0.24 5.3E-06 45.6 4.7 19 43-61 142-160 (308)
487 PRK09302 circadian clock prote 91.8 1.8 3.8E-05 43.2 11.0 52 45-106 273-324 (509)
488 PRK12608 transcription termina 91.8 1.2 2.5E-05 41.8 8.9 29 33-61 118-149 (380)
489 KOG2036 Predicted P-loop ATPas 91.8 6.6 0.00014 39.5 14.1 58 32-97 255-319 (1011)
490 PRK05748 replicative DNA helic 91.8 2 4.3E-05 42.0 11.1 68 27-103 185-252 (448)
491 COG1066 Sms Predicted ATP-depe 91.8 1.9 4.1E-05 40.5 10.1 60 36-106 79-143 (456)
492 TIGR01389 recQ ATP-dependent D 91.8 5.9 0.00013 40.3 14.9 60 252-311 52-111 (591)
493 KOG0729 26S proteasome regulat 91.7 1.5 3.2E-05 38.6 8.8 56 4-61 170-227 (435)
494 PRK07399 DNA polymerase III su 91.7 2.4 5.1E-05 39.2 10.9 54 139-196 108-161 (314)
495 TIGR02640 gas_vesic_GvpN gas v 91.7 0.22 4.8E-06 44.7 4.2 27 36-62 12-38 (262)
496 PF13555 AAA_29: P-loop contai 91.6 0.17 3.6E-06 33.8 2.3 17 45-61 23-39 (62)
497 PRK05800 cobU adenosylcobinami 91.6 0.99 2.2E-05 37.4 7.6 46 47-104 3-48 (170)
498 PRK05636 replicative DNA helic 91.5 1.4 2.9E-05 43.6 9.5 20 44-63 264-283 (505)
499 cd00544 CobU Adenosylcobinamid 91.5 0.79 1.7E-05 38.0 6.8 46 48-105 2-47 (169)
500 cd01127 TrwB Bacterial conjuga 91.4 0.2 4.4E-06 48.2 3.7 50 39-97 36-85 (410)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-82 Score=553.45 Aligned_cols=409 Identities=66% Similarity=1.034 Sum_probs=396.0
Q ss_pred ccccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 013727 3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (437)
Q Consensus 3 ~~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 82 (437)
..++.++|.+|+++++++++++..|+..||++|.+++|.++.|+|++..|.||||||.+|++|++++++..+ ..
T Consensus 56 ~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p------~~ 129 (476)
T KOG0330|consen 56 TDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP------KL 129 (476)
T ss_pred hhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC------CC
Confidence 356778999999999999999999999999999999999999999999999999999999999999999865 66
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEE
Q 013727 83 FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (437)
Q Consensus 83 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 162 (437)
++++|++||||||.|+.+.|+.++...++.+..+.||.+...+...+.+.++|+|+||++|++++.+.+.|++..++++|
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred EcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHH
Q 013727 163 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242 (437)
Q Consensus 163 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (437)
+||||++++++|...+..|+..+|..+|.++||||++..+..+....+.+|..+.....+...+.+.|.|.+++..+|..
T Consensus 210 lDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~ 289 (476)
T KOG0330|consen 210 LDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDT 289 (476)
T ss_pred hchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCC
Q 013727 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (437)
Q Consensus 243 ~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~ 322 (437)
++.+++.+..+.+.||||+++..++.++-.|+.+|+.+..+||.|++..|.-.++.|++|.++||||||++++|+|+|.+
T Consensus 290 yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~V 369 (476)
T KOG0330|consen 290 YLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHV 369 (476)
T ss_pred hHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhHHHhhhhhhH
Q 013727 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEEEVLLLLERVTEAKRISQM 402 (437)
Q Consensus 323 ~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (437)
++|||||.|.+..+|+||.||++|+|..|.++++++.+|.+.+.+|+..+++++++++.+...+..+.+++.++.+.+.+
T Consensus 370 d~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~~~~l~erv~eA~~~a~m 449 (476)
T KOG0330|consen 370 DVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNEVMSLNERVAEAQKEAGM 449 (476)
T ss_pred eEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCccccCCCC
Q 013727 403 TIKDSGNKRRRKGGD 417 (437)
Q Consensus 403 ~~~~~~~~~~~~~~~ 417 (437)
+.++.+.++.+++++
T Consensus 450 ~~ke~~~~~g~~~~~ 464 (476)
T KOG0330|consen 450 EMKELGKRKGKRPQG 464 (476)
T ss_pred chhhhccccCCCCcc
Confidence 999998888554443
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-73 Score=524.58 Aligned_cols=376 Identities=38% Similarity=0.593 Sum_probs=348.2
Q ss_pred CccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 013727 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL 88 (437)
Q Consensus 9 ~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl 88 (437)
.|++++|+++...+|+..||..|||+|.+.||.++.|+|++..+.||||||++|++|++.++...........++++||+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999874333444568999999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccc
Q 013727 89 SPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR 168 (437)
Q Consensus 89 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~ 168 (437)
+||||||.|+.+.+..++..+.+++.+++||.+...+...+.++.+|+|+||++|.+++.... .+++++.++|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~-~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS-LNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC-ccccceeEEEeccHHh
Confidence 999999999999999999999999999999999999999999999999999999999998865 6899999999999999
Q ss_pred ccccccHHHHHHHHHhC-CccceEEEEeecCchHHHHHHHHhcCCCcEEEccccc--ccccCceEEEEEccCCChHHHHH
Q 013727 169 LLNDDFEKSLDEILNVI-PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY--STVDTLKQQYRFVPAKYKDCYLV 245 (437)
Q Consensus 169 ~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 245 (437)
|++++|.+++..|+..+ +..+|++++|||+|.+++.++..++.+|..+...... ....++.|....++...+...+.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 5566899999999999999999999999998887543 55677888888888778888888
Q ss_pred HHHHhc---CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCC
Q 013727 246 YILTEV---SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (437)
Q Consensus 246 ~~l~~~---~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~ 322 (437)
.+|... .++++||||++++.|++++..++..++++..+||+.++.+|..+++.|++|++.||||||++++|+|+|+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 888766 46789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCHHH
Q 013727 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEEE 385 (437)
Q Consensus 323 ~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 385 (437)
++|||||+|.+.++|+||+||+||+|++|.+++|++..+......+.+.+......++.....
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~ 473 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLE 473 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999887777766655444
No 3
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-72 Score=482.35 Aligned_cols=413 Identities=49% Similarity=0.731 Sum_probs=377.8
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~ 83 (437)
....++|+.|||++|+.+.|+++|+..|||+|..++|.++.|+|++.+|.||||||.+|.+|+++.+.+++ .+.
T Consensus 3 ~~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP------~gi 76 (442)
T KOG0340|consen 3 RKTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP------YGI 76 (442)
T ss_pred ccccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC------Ccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999877 888
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCC---CCCCCCccE
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK---GFSLGTLKY 160 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~---~~~~~~~~~ 160 (437)
.++|++|||+|+-|+.+.|..++...++++.+++||.+.-.+...+.+++|+||+|||++.+++.++. .+.+.++.+
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkf 156 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKF 156 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceee
Confidence 99999999999999999999999999999999999999999999999999999999999999998762 346889999
Q ss_pred EEEcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCC--CcEEEcccccccccCceEEEEEccCC
Q 013727 161 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN--PVKIEAASKYSTVDTLKQQYRFVPAK 238 (437)
Q Consensus 161 vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (437)
+|+||||++++..|...+..+.+.+|..+|.++||||+++.+..+...-... ...+...........+.+.|..++..
T Consensus 157 lVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~ 236 (442)
T KOG0340|consen 157 LVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSID 236 (442)
T ss_pred EEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchh
Confidence 9999999999999999999999999999999999999999888776655554 34444445566677889999999999
Q ss_pred ChHHHHHHHHHhcC---CCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCC
Q 013727 239 YKDCYLVYILTEVS---ASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 315 (437)
Q Consensus 239 ~~~~~~~~~l~~~~---~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~ 315 (437)
.+..++..++.... .+.++||+++..+|+.++..|+.+++.+..+|+.|++.+|...+.+|+++..+||||||++++
T Consensus 237 vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsR 316 (442)
T KOG0340|consen 237 VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASR 316 (442)
T ss_pred hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhc
Confidence 99999999998663 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhHHH
Q 013727 316 GLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEEEVLLLLERVTE 395 (437)
Q Consensus 316 Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (437)
|+|+|.|+.|||||.|.+|.+|+||.||+.|+|+.|.+++++.+.|.+.+..+++..++++.+++.........+..++.
T Consensus 317 GLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~~~~~~t~V~~ 396 (442)
T KOG0340|consen 317 GLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRTVELYVTQVTV 396 (442)
T ss_pred CCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccchhhheehhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888778899999
Q ss_pred hhhhhhHhhhhccCc-----cccCCCCCCCch
Q 013727 396 AKRISQMTIKDSGNK-----RRRKGGDEDDDI 422 (437)
Q Consensus 396 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 422 (437)
+++.+.+...+++.. +++++.+++++.
T Consensus 397 akrea~m~m~~~~F~er~q~R~~k~~m~~~~~ 428 (442)
T KOG0340|consen 397 AKREAEMKMDNNGFGERAQKRRKKRKMEGGDS 428 (442)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHhhcCChH
Confidence 999999888776543 333334554444
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-68 Score=516.64 Aligned_cols=364 Identities=45% Similarity=0.713 Sum_probs=341.1
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE-EE
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF-AC 86 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~-~l 86 (437)
..|++++|++++.++|+++||..|||+|..++|.++.|+|+++.++||||||++|++|+++.+..... .... +|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~-----~~~~~aL 103 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE-----RKYVSAL 103 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc-----cCCCceE
Confidence 57999999999999999999999999999999999999999999999999999999999999764210 1111 99
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcc
Q 013727 87 VLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (437)
Q Consensus 87 vl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 165 (437)
|++|||+||.|+++.+..++... ++.+..++||.+...+...+..+++|||+||++|++++... .+++..+.++|+||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDE 182 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDE 182 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEecc
Confidence 99999999999999999999988 79999999999999999888888999999999999999886 57999999999999
Q ss_pred cccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccc--cccCceEEEEEccCCC-hHH
Q 013727 166 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS--TVDTLKQQYRFVPAKY-KDC 242 (437)
Q Consensus 166 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~ 242 (437)
||+|++++|.+.+..|+..++..+|+++||||++..+..+...++.+|..+....... ....+.+.+..+.... +..
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~ 262 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE 262 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888875544 6788999999999876 999
Q ss_pred HHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCC
Q 013727 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (437)
Q Consensus 243 ~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~ 322 (437)
.+..++......++||||+++..++.++..|...|+++..+||++++.+|.++++.|++|+.+||||||++++|||+|++
T Consensus 263 ~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 263 LLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred HHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccc
Confidence 99999998888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccc-cHHHHHHHHHHhCCCCC
Q 013727 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY-ELEWYLQIEKLIGKKLP 377 (437)
Q Consensus 323 ~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~-~~~~~~~l~~~~~~~~~ 377 (437)
++|||||.|.+++.|+||+||+||+|..|.+++|+.+. +...+..+++.+...++
T Consensus 343 ~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 343 SHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred ceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999986 89999999999877755
No 5
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-69 Score=486.01 Aligned_cols=361 Identities=43% Similarity=0.678 Sum_probs=343.0
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lv 87 (437)
.+|.+++||-.+++++..+||..|||+|..+||..+-|+|+..+|.||||||.+|++|++.+++..+.. ....+|||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRVLV 257 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRVLV 257 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeEEE
Confidence 489999999999999999999999999999999999999999999999999999999999999986643 36779999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccc
Q 013727 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (437)
Q Consensus 88 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h 167 (437)
+||||+|+.|++...++++....+.+++..||.+...+...+...+||||+|||+|.+|+.+...|.+.++.++|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccC---CChHHHH
Q 013727 168 RLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA---KYKDCYL 244 (437)
Q Consensus 168 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 244 (437)
+|++.+|...+..|+..++.++|.++||||++..+..++...++.|+.+.+.........+.|.|.-+.. ..+...+
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999999999988888888887765553 3467778
Q ss_pred HHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCE
Q 013727 245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 324 (437)
Q Consensus 245 ~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~ 324 (437)
..++.......+|||+.+.+.|.++.-.|--+|.++.-+||.+++.+|.+.++.|++++++||||||++++|+|++++.+
T Consensus 418 ~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~t 497 (691)
T KOG0338|consen 418 ASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQT 497 (691)
T ss_pred HHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeE
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHH
Q 013727 325 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKL 371 (437)
Q Consensus 325 Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~ 371 (437)
||||.+|.+...|+||+||+.|+|+.|.+++++...|...++.+.+.
T Consensus 498 VINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 498 VINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred EEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999888877
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.2e-67 Score=504.93 Aligned_cols=382 Identities=34% Similarity=0.509 Sum_probs=342.3
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhc-CCCCCeE
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQ-RTVPAFF 84 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~-~~~~~~~ 84 (437)
+..+|++++|++++.++|+.+||..|+++|.++||.+++|+|++++||||||||++|++|+++.+....... ....+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 446899999999999999999999999999999999999999999999999999999999999987643211 1124578
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEc
Q 013727 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 164 (437)
+||++||++|+.|+.+.+..++...++.+..++||.....+...+..+++|+|+||++|.+++... .+.+.++++||+|
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-~~~l~~v~~lViD 164 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN-HINLGAIQVVVLD 164 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccccEEEEe
Confidence 999999999999999999999988899999999998888777778888999999999999988764 4688999999999
Q ss_pred ccccccccccHHHHHHHHHhCCc--cceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHH
Q 013727 165 EADRLLNDDFEKSLDEILNVIPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242 (437)
Q Consensus 165 E~h~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (437)
|||++++.+|...+..++..++. .++.+++|||++..+..+....+.+|..+...........+.+.+.......+..
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHH
Confidence 99999999999999999998874 4568999999999999998888888888877665555556666666666666777
Q ss_pred HHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCC
Q 013727 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (437)
Q Consensus 243 ~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~ 322 (437)
.+..++......++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++
T Consensus 245 ~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 245 LLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 77788877777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCHHHHHH
Q 013727 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEEEVLL 388 (437)
Q Consensus 323 ~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 388 (437)
++||+||+|.+..+|+||+||+||.|+.|.+++|+.+.+...+..+++.++..++..+.+.+++..
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 390 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYDSDALLT 390 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChhhhhh
Confidence 999999999999999999999999999999999999999999999999999998888777776654
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.1e-68 Score=479.31 Aligned_cols=371 Identities=36% Similarity=0.608 Sum_probs=350.6
Q ss_pred ccccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhh---cCC
Q 013727 3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAEN---QRT 79 (437)
Q Consensus 3 ~~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~---~~~ 79 (437)
-++|+.+|++.++|.++++.+...||..|+|+|+.++|..++.+|+|..+.||||||.+|++|++.++...+.. .+.
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999999998875522 245
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCcc
Q 013727 80 VPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLK 159 (437)
Q Consensus 80 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~ 159 (437)
..++.+++++|||+|++|+.++-.+|+..+++.++.+.||.+..++...+..+|+|+|+||++|.+.+.+.- +-++++.
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~-lvl~qct 398 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY-LVLNQCT 398 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH-HHhccCc
Confidence 578999999999999999999999999999999999999999999988899999999999999999998743 5789999
Q ss_pred EEEEcccccccccccHHHHHHHHHhCCcc-------------------------ceEEEEeecCchHHHHHHHHhcCCCc
Q 013727 160 YLVLDEADRLLNDDFEKSLDEILNVIPRM-------------------------RQTYLFSATMTKKVKKLQRACLKNPV 214 (437)
Q Consensus 160 ~vViDE~h~~~~~~~~~~~~~i~~~~~~~-------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~ 214 (437)
+||+|||++|.+++|.+++..++..+|.. +|.++||||+++.++.+++.++.+|.
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 99999999999999999999999988632 58999999999999999999999999
Q ss_pred EEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHH
Q 013727 215 KIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLG 294 (437)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 294 (437)
.+.........+.+.|.+..++...+...+..++......++|||+|+++.|+.+++.|.+.|+.+..+||+-++++|+.
T Consensus 479 ~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 479 VVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCC
Q 013727 295 ALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGK 374 (437)
Q Consensus 295 ~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~ 374 (437)
++..|++|..+||||||++++|||+|+|.+|||||++.|.++|.|||||+||+|+.|.+++|+++.|...+.+|...+..
T Consensus 559 aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~e 638 (673)
T KOG0333|consen 559 ALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRE 638 (673)
T ss_pred HHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888887754
No 8
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-68 Score=441.92 Aligned_cols=374 Identities=34% Similarity=0.567 Sum_probs=350.9
Q ss_pred ccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 013727 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (437)
+.+.+|++.||.+++++++.+.||+.|+.+|+.|++.+++|+++++++..|+|||.+|.+.++..+.-.. ...+
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~------r~tQ 97 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV------RETQ 97 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc------ceee
Confidence 4567899999999999999999999999999999999999999999999999999999888887665332 5578
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEc
Q 013727 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 164 (437)
++++.|||+|+.|+.+.+..++...++.++.+.||.+..+....+..+.+++.+||+++++++.+.. +..+.++++|+|
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~-L~tr~vkmlVLD 176 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS-LRTRAVKMLVLD 176 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc-ccccceeEEEec
Confidence 9999999999999999999999999999999999999888888888899999999999999998765 578899999999
Q ss_pred ccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCC-hHHH
Q 013727 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY-KDCY 243 (437)
Q Consensus 165 E~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 243 (437)
|||.|++.+|..++-.++..+|+..|++++|||+|.++......++.+|+.+.+..+......+.+.|..+..+. |...
T Consensus 177 EaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdt 256 (400)
T KOG0328|consen 177 EADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDT 256 (400)
T ss_pred cHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhH
Confidence 999999999999999999999999999999999999999999999999999999999888888999888777654 8888
Q ss_pred HHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCC
Q 013727 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD 323 (437)
Q Consensus 244 ~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~ 323 (437)
+..+-....-..++||||++..+..+.+.+++.++.+...||+|++++|..++.+|++|+.+||++||+-++|+|+|.++
T Consensus 257 LcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 257 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVS 336 (400)
T ss_pred HHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeE
Confidence 88887777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCHHH
Q 013727 324 MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEEE 385 (437)
Q Consensus 324 ~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 385 (437)
+|||||.|.+.+.|+||+||.||.|++|.++-|+..+|...+.+++++++..+.++|.+..+
T Consensus 337 lviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 337 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred EEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999987543
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.3e-66 Score=499.71 Aligned_cols=374 Identities=39% Similarity=0.613 Sum_probs=338.7
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lv 87 (437)
++|++++|++++.++|.++||..||++|.++++.++.++|+++++|||||||++|++|+++.+.............++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999875432222223468999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccc
Q 013727 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (437)
Q Consensus 88 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h 167 (437)
++||++|+.|+.+.++.+....++.+..++|+.....+...+..+++|+|+||++|++++.... +.++++++||+||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~-~~l~~v~~lViDEah 159 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA-VKLDQVEILVLDEAD 159 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC-cccccceEEEeecHH
Confidence 9999999999999999998888899999999998888877788889999999999999877643 578999999999999
Q ss_pred cccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHH
Q 013727 168 RLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247 (437)
Q Consensus 168 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (437)
++++.+|...+..++..++...|.+++|||+++.+..+...++.++..+...........+.+.+..++...+...+..+
T Consensus 160 ~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877666555556677777777777777777788
Q ss_pred HHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEE
Q 013727 248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN 327 (437)
Q Consensus 248 l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~ 327 (437)
+......++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+
T Consensus 240 ~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred HHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 77777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCC
Q 013727 328 YDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAE 382 (437)
Q Consensus 328 ~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 382 (437)
|++|.++.+|+||+||+||.|..|.+++++...|...+..+++.+...++.....
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~~~~ 374 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 (456)
T ss_pred eCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcccccC
Confidence 9999999999999999999999999999999999999999999998887655433
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7.9e-66 Score=503.72 Aligned_cols=379 Identities=37% Similarity=0.541 Sum_probs=338.2
Q ss_pred ccccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 013727 3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (437)
Q Consensus 3 ~~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 82 (437)
.++++.+|+++++++++.+.|+++||..||++|.++||.+++|+|+++++|||||||++|++|++.++..... .....+
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~g 203 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGDG 203 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCCC
Confidence 3678889999999999999999999999999999999999999999999999999999999999988765321 111246
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEE
Q 013727 83 FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (437)
Q Consensus 83 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 162 (437)
+.+|||+||++|+.|+.+.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++.... ..+.++++||
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~-~~l~~v~~lV 282 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV-TNLRRVTYLV 282 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC-CChhhCcEEE
Confidence 789999999999999999999999888899999999999888888888889999999999999887643 5789999999
Q ss_pred EcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcC-CCcEEEccccc-ccccCceEEEEEccCCCh
Q 013727 163 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLK-NPVKIEAASKY-STVDTLKQQYRFVPAKYK 240 (437)
Q Consensus 163 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 240 (437)
+||||++++++|...+..++..+++.+|++++|||++..+..+...++. .+..+...... .....+.+.+..+....+
T Consensus 283 iDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k 362 (545)
T PTZ00110 283 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEK 362 (545)
T ss_pred eehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhH
Confidence 9999999999999999999999999999999999999999998888775 56666554332 333566677777777777
Q ss_pred HHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCC
Q 013727 241 DCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLD 318 (437)
Q Consensus 241 ~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid 318 (437)
...+..++... .+.++||||++++.|+.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 363 ~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGID 442 (545)
T PTZ00110 363 RGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLD 442 (545)
T ss_pred HHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCC
Confidence 77777777765 5679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCH
Q 013727 319 IPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEE 383 (437)
Q Consensus 319 ~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 383 (437)
+|++++||+||+|.+.++|+||+||+||.|..|.+++|+++.+......+.+.+......+|...
T Consensus 443 i~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l 507 (545)
T PTZ00110 443 VKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPEL 507 (545)
T ss_pred cccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999888777766433
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.6e-65 Score=501.05 Aligned_cols=372 Identities=40% Similarity=0.619 Sum_probs=341.8
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEE
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (437)
..++|++++|++.++++|.++||..|+|+|.++|+.++++++++++||||||||++|++|+++.+.... ..+++
T Consensus 4 ~~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~------~~~~~ 77 (629)
T PRK11634 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL------KAPQI 77 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc------CCCeE
Confidence 456899999999999999999999999999999999999999999999999999999999998875432 45689
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEc
Q 013727 86 CVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (437)
Q Consensus 86 lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 164 (437)
||++||++|+.|+++.+..+.... ++.+..++|+.+...+...+..+++|+|+||++|++++.... +.++++++||+|
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~-l~l~~l~~lVlD 156 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT-LDLSKLSGLVLD 156 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cchhhceEEEec
Confidence 999999999999999999987654 788999999998888888888889999999999999987744 678999999999
Q ss_pred ccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHH
Q 013727 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244 (437)
Q Consensus 165 E~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (437)
|||+|++.+|...+..++..++...|+++||||++..+..+...++.+|..+...........+.+.+..+....+...+
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L 236 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHH
Confidence 99999999999999999999999999999999999999999999999998887776665666777888888887888888
Q ss_pred HHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCE
Q 013727 245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 324 (437)
Q Consensus 245 ~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~ 324 (437)
..++......++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 237 ~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~ 316 (629)
T PRK11634 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISL 316 (629)
T ss_pred HHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCE
Confidence 88888877789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCHH
Q 013727 325 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEE 384 (437)
Q Consensus 325 Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 384 (437)
||+||.|.+++.|+||+||+||.|+.|.+++++.+.+...+..+++.++..+++++.+..
T Consensus 317 VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~ 376 (629)
T PRK11634 317 VVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 376 (629)
T ss_pred EEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcH
Confidence 999999999999999999999999999999999999999999999999988877655443
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.9e-65 Score=499.59 Aligned_cols=376 Identities=38% Similarity=0.539 Sum_probs=337.7
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhh-cCCCCCeEEE
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAEN-QRTVPAFFAC 86 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~-~~~~~~~~~l 86 (437)
.+|++++|++++.++|+++||..||++|.++||.+++|+|+++++|||||||++|++|+++.+...... ......+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 369999999999999999999999999999999999999999999999999999999999988753211 1111357899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccc
Q 013727 87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (437)
Q Consensus 87 vl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~ 166 (437)
|++||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|++++.....+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 99999999999999999999888999999999999888777787889999999999999987765567889999999999
Q ss_pred ccccccccHHHHHHHHHhCCc--cceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHH
Q 013727 167 DRLLNDDFEKSLDEILNVIPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244 (437)
Q Consensus 167 h~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (437)
|++++.+|...+..++..++. ..|+++||||++..+..+...++..+..+...........+.+.+.......+...+
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHH
Confidence 999999999999999998886 679999999999999999888888887776655544555666777776666777778
Q ss_pred HHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCE
Q 013727 245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 324 (437)
Q Consensus 245 ~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~ 324 (437)
..++....+.++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++
T Consensus 249 ~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~ 328 (572)
T PRK04537 249 LGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKY 328 (572)
T ss_pred HHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCE
Confidence 88887777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCH
Q 013727 325 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEE 383 (437)
Q Consensus 325 Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 383 (437)
||+||.|.+..+|+||+||+||.|..|.+++|+++.+...+..+++.++.+++..+...
T Consensus 329 VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 387 (572)
T PRK04537 329 VYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVTA 387 (572)
T ss_pred EEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccccCh
Confidence 99999999999999999999999999999999999999999999999988876655544
No 13
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.1e-65 Score=460.52 Aligned_cols=372 Identities=39% Similarity=0.599 Sum_probs=340.6
Q ss_pred ccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEE
Q 013727 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (437)
Q Consensus 7 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~l 86 (437)
...|++..|++...++++.+||..+|++|...++.++.|+|+++.|.||||||++|++|+++.+........ .+..++
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r--~~~~vl 158 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR--NGTGVL 158 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC--CCeeEE
Confidence 446999999999999999999999999999999999999999999999999999999999999987654333 566799
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcc
Q 013727 87 VLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (437)
Q Consensus 87 vl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 165 (437)
|+||||+||.|++.+++.+.... ++.+..+.||.....+...+.++++|+|+|||+|.+++.+...|-..+.+++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999998877 89999999999999999999889999999999999999998888888899999999
Q ss_pred cccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCC-CcEEEcccccc--cccCceEEEEEccCCChHH
Q 013727 166 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-PVKIEAASKYS--TVDTLKQQYRFVPAKYKDC 242 (437)
Q Consensus 166 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 242 (437)
||++++.+|...+..|+..+|..+|.++||||.++.++.++...+.. |..+.+..... ....+.|.|..++...+..
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99999999999999999999999999999999999999999888866 66666655433 4457888899999988888
Q ss_pred HHHHHHHhcCC-CcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCC
Q 013727 243 YLVYILTEVSA-SSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (437)
Q Consensus 243 ~~~~~l~~~~~-~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~ 321 (437)
.+..+++++.. .++||||+|+..+..+++.|+....+|..+||+.++..|..+...|++.+..||||||++++|+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 88888887765 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCH
Q 013727 322 VDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEE 383 (437)
Q Consensus 322 ~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 383 (437)
|++||+||+|.++.+|+||+||+||.|..|.++++..|.+..++..+. ..++++++.++
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~ 457 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPP 457 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCC
Confidence 999999999999999999999999999999999999999999999888 34555554443
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.8e-65 Score=492.52 Aligned_cols=368 Identities=36% Similarity=0.552 Sum_probs=338.0
Q ss_pred ccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEE
Q 013727 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (437)
Q Consensus 7 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~l 86 (437)
.++|++++|++++.++|+++||..|+|+|.++++.+++|++++++||||||||++|++|++..+.... ...++|
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~------~~~~~l 76 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR------FRVQAL 76 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc------CCceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999885332 356799
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcc
Q 013727 87 VLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (437)
Q Consensus 87 vl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 165 (437)
|++||++|+.|+.+.++.++... ++.+..++||.+...+...+..+++|+|+||++|.+++.+.. +.+.++++||+||
T Consensus 77 il~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~-~~l~~l~~lViDE 155 (460)
T PRK11776 77 VLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT-LDLDALNTLVLDE 155 (460)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC-ccHHHCCEEEEEC
Confidence 99999999999999999987654 688999999999888888888899999999999999887743 5789999999999
Q ss_pred cccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHH
Q 013727 166 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV 245 (437)
Q Consensus 166 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (437)
||++++.+|...+..++..++...|++++|||+++.+..+...++.+|..+...... ....+.+.+..++...+...+.
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888776544 3345777888888877888888
Q ss_pred HHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEE
Q 013727 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV 325 (437)
Q Consensus 246 ~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~V 325 (437)
.++......++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 235 ~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 235 RLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCC
Q 013727 326 INYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAE 382 (437)
Q Consensus 326 i~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 382 (437)
|+||.|.++..|+||+||+||.|..|.+++++.+.+...+..+++.++..+++.+.+
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~ 371 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLP 371 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecCC
Confidence 999999999999999999999999999999999999999999999999887765544
No 15
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-67 Score=442.63 Aligned_cols=368 Identities=33% Similarity=0.590 Sum_probs=349.5
Q ss_pred ccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEE
Q 013727 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (437)
Q Consensus 7 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~l 86 (437)
-..|+++.|-.+++..+...||+.|+|+|++++|.++.|+|+++.|..|+|||.+|++|+++.+.... ...+++
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~------~~IQ~~ 157 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK------NVIQAI 157 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc------cceeEE
Confidence 35799999999999999999999999999999999999999999999999999999999999887544 567899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccc
Q 013727 87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (437)
Q Consensus 87 vl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~ 166 (437)
|++|||+||.|+...+.+++.+.++.+...+||++.......+.+..+++|+||++++++..+.- -.+++..++|+|||
T Consensus 158 ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV-a~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 158 ILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV-ADLSDCVILVMDEA 236 (459)
T ss_pred EEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccc-ccchhceEEEechh
Confidence 99999999999999999999999999999999999988888888899999999999999887743 47999999999999
Q ss_pred ccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHH
Q 013727 167 DRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246 (437)
Q Consensus 167 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (437)
|.+++.+|...++.++..+|+.+|++++|||+|-.+..+...++.+|..++...+. ....+.|.|.++.+..|...+..
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL-tl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL-TLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhh-hhcchhhheeeechhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999888764 44778899999999999999999
Q ss_pred HHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEE
Q 013727 247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 326 (437)
Q Consensus 247 ~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi 326 (437)
++....-...||||||...++.+|+.+.+.|+.|..+|+.|-++.|.++...|++|.++.|||||.+.+|+|++.+++||
T Consensus 316 LfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI 395 (459)
T KOG0326|consen 316 LFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI 395 (459)
T ss_pred HHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCC
Q 013727 327 NYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAE 382 (437)
Q Consensus 327 ~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 382 (437)
|+|+|.++++|+||+||.||.|.-|.++.+++..|...+..++..++..+.+.|..
T Consensus 396 NFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 396 NFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred ecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999988864
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.2e-64 Score=491.32 Aligned_cols=377 Identities=32% Similarity=0.516 Sum_probs=334.7
Q ss_pred ccccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhc-CCCC
Q 013727 3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQ-RTVP 81 (437)
Q Consensus 3 ~~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~-~~~~ 81 (437)
.++|+.+|++++|++.+.+.|++.||..|||+|.++|+.+++|+++++.+|||||||++|++|++.++....... ....
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 367899999999999999999999999999999999999999999999999999999999999999886532111 1125
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEE
Q 013727 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (437)
Q Consensus 82 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~v 161 (437)
++++||++||++|+.|+.+.++.++...++.+..++||.....+...+..+++|+|+||++|.+++... .+.+.++++|
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~l 274 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH-DIELDNVSVL 274 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccchheeEE
Confidence 678999999999999999999999888888999999998888777778888999999999999988875 4678999999
Q ss_pred EEcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChH
Q 013727 162 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241 (437)
Q Consensus 162 ViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (437)
|+||||+|++.+|...+..++..++ ..|++++|||+++.+..+...+..++..+...........+.+.+..+....+.
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~ 353 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKK 353 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHH
Confidence 9999999999999999999988885 578999999999999999999999998888776655556667777777777777
Q ss_pred HHHHHHHHhcC--CCcEEEEecchHHHHHHHHHHHh-cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCC
Q 013727 242 CYLVYILTEVS--ASSTMVFTRTCDATRLLALMLRN-LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLD 318 (437)
Q Consensus 242 ~~~~~~l~~~~--~~~~iVf~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid 318 (437)
..+..++.... ..++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 354 ~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiD 433 (518)
T PLN00206 354 QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVD 433 (518)
T ss_pred HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCC
Confidence 77777776543 46899999999999999999975 6889999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCC
Q 013727 319 IPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPA 381 (437)
Q Consensus 319 ~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 381 (437)
+|++++||+||+|.+..+|+||+||+||.|..|.+++|+.+.+...+..+.+.+...-..+|.
T Consensus 434 ip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~ 496 (518)
T PLN00206 434 LLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPR 496 (518)
T ss_pred cccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999999999999999999999988888888887765554443
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.4e-64 Score=483.90 Aligned_cols=368 Identities=39% Similarity=0.604 Sum_probs=331.3
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lv 87 (437)
++|++++|++.+.+.|+.+||..|+++|.++++.++.++++++++|||+|||++|++|++..+...... .....++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~li 78 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRILI 78 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEEE
Confidence 379999999999999999999999999999999999999999999999999999999999988753211 113568999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccc
Q 013727 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (437)
Q Consensus 88 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h 167 (437)
++||++|+.|+.+.+..++...++.+..++|+.....+...+..+++|+|+||++|++++.... +.+.++++||+||||
T Consensus 79 l~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~-~~~~~v~~lViDEah 157 (434)
T PRK11192 79 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN-FDCRAVETLILDEAD 157 (434)
T ss_pred ECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-cCcccCCEEEEECHH
Confidence 9999999999999999999888999999999999888887788889999999999999887643 678999999999999
Q ss_pred cccccccHHHHHHHHHhCCccceEEEEeecCch-HHHHHHHHhcCCCcEEEcccccccccCceEEEEEccC-CChHHHHH
Q 013727 168 RLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK-KVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLV 245 (437)
Q Consensus 168 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 245 (437)
++++.+|...+..+....+...|+++||||++. .+..+...++.++..+...........+.+.+...+. ..+...+.
T Consensus 158 ~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 158 RMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred HHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHH
Confidence 999999999999999999988999999999985 5788888888888888776655555566666666654 44666777
Q ss_pred HHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEE
Q 013727 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV 325 (437)
Q Consensus 246 ~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~V 325 (437)
.++......++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++|
T Consensus 238 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~V 317 (434)
T PRK11192 238 HLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHV 317 (434)
T ss_pred HHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEE
Confidence 77776677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCC
Q 013727 326 INYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPE 378 (437)
Q Consensus 326 i~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~ 378 (437)
|+||+|.+...|+||+||+||.|..|.+++++...|...+..+++++...+..
T Consensus 318 I~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 318 INFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred EEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999988776654
No 18
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-64 Score=456.21 Aligned_cols=379 Identities=36% Similarity=0.579 Sum_probs=344.6
Q ss_pred ccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 013727 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (437)
..++.|++|+|+....++|+..+|..||++|+++||..+.|+|++..|.||||||++|++|+++.+....+... .+.-
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~--DGlG 143 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPT--DGLG 143 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCC--CCce
Confidence 34568999999999999999999999999999999999999999999999999999999999999998766544 3445
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEc
Q 013727 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 164 (437)
+|||.|||+||.|+++.+.+.+...++..+++.||.....+...+. +.+|+|||||+|+.|+..+..|+..++.++|+|
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLD 222 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLD 222 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEec
Confidence 8999999999999999999999999999999999998766665554 599999999999999999998999999999999
Q ss_pred ccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEccc--ccccccCceEEEEEccCCChHH
Q 013727 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS--KYSTVDTLKQQYRFVPAKYKDC 242 (437)
Q Consensus 165 E~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 242 (437)
|||+|++++|...+..|++.+|..+|+++||||.+..+.++++..+.+|..+.+.. ....+.++.|.|..++...+..
T Consensus 223 EADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~ 302 (758)
T KOG0343|consen 223 EADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID 302 (758)
T ss_pred cHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH
Confidence 99999999999999999999999999999999999999999999999998776653 3567789999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhc--CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCC
Q 013727 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP 320 (437)
Q Consensus 243 ~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~ 320 (437)
.+-.++..+...+.|||++|++++..+++.+.++ |++...+||.|++..|..+...|.+...-||+|||++++|+|+|
T Consensus 303 ~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 303 MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 9999999999999999999999999999999976 77889999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHH-HHHHHHHHhCCCCCCCCCCHHHHH
Q 013727 321 SVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELE-WYLQIEKLIGKKLPEFPAEEEEVL 387 (437)
Q Consensus 321 ~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~ 387 (437)
.|++||++|.|.++++|+||+||+.|.+..|.++++..|.+.+ ++..|++. +.++.+...+++.+.
T Consensus 383 aVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k-~I~i~~i~i~~~k~~ 449 (758)
T KOG0343|consen 383 AVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK-KIPIKEIKIDPEKLT 449 (758)
T ss_pred ccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc-CCCHHhhccCHHHhh
Confidence 9999999999999999999999999999999999999999854 44445443 355556655555443
No 19
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-64 Score=446.63 Aligned_cols=361 Identities=39% Similarity=0.600 Sum_probs=325.6
Q ss_pred ccCccccC--CCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 013727 7 VKTFKELG--LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (437)
Q Consensus 7 ~~~f~~~~--l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (437)
.++|+.++ |++++.+++..+||..+||+|..++|.+++++|+++.++||||||++|++|++..+.+.....+. ...-
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~-~~vg 81 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPP-GQVG 81 (567)
T ss_pred CcchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCc-ccee
Confidence 35788886 55999999999999999999999999999999999999999999999999999999654433221 1356
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcC-CCcEEEEEEcCCChHHHHHHh-CCCCcEEEECchHHHHHHhc-CCCCCCCCccEE
Q 013727 85 ACVLSPTRELAIQISEQFEALGSG-ISLRCAVLVGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTN-TKGFSLGTLKYL 161 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~-~~~~~iiv~Tp~~l~~~l~~-~~~~~~~~~~~v 161 (437)
+|||+|||+|+.|+.+.+..|... .++++.+++||.........+ ..+++|+|||||+|.+++.. ...+++..+.++
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~L 161 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEIL 161 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceE
Confidence 899999999999999999998876 588999999998877666655 45789999999999999977 334567799999
Q ss_pred EEcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccc--cccCceEEEEEccCCC
Q 013727 162 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS--TVDTLKQQYRFVPAKY 239 (437)
Q Consensus 162 ViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 239 (437)
|+||||++++++|...+..|++.+|+.+.+=+||||....+.++....+.+|..+.+..... .+..+...|..+....
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e 241 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE 241 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHH
Confidence 99999999999999999999999999999999999999999999999999999998888766 5667888999999999
Q ss_pred hHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhc--CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCC
Q 013727 240 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGL 317 (437)
Q Consensus 240 ~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gi 317 (437)
+...+..++......++|||++|+..++.....+..+ ...+..+||.|++..|..++..|.+..-.+|+|||++++|+
T Consensus 242 K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 242 KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 9999999999999999999999999999999998876 56789999999999999999999998889999999999999
Q ss_pred CCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHH
Q 013727 318 DIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (437)
Q Consensus 318 d~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l 368 (437)
|+|++++||+||+|.++..|+||.||++|+|..|.+++|+.+.+..+...+
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 999999999999999999999999999999999999999999766655443
No 20
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.9e-62 Score=471.83 Aligned_cols=381 Identities=35% Similarity=0.536 Sum_probs=334.7
Q ss_pred ccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcC-CCCCe
Q 013727 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQR-TVPAF 83 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~-~~~~~ 83 (437)
+...+|..++|++.+.++|.++||..|+++|.++++.+++|+|+++.+|||||||++|++|++..+........ .....
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 34568999999999999999999999999999999999999999999999999999999999999876532211 11257
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhC-CCCcEEEECchHHHHHHhcCCCCCCCCccEEE
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 162 (437)
++||++||++|+.|+.+.++.+....++.+..++||.+...+...+. ..++|+|+||++|.+++.... ..++++++||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~-~~l~~l~~lV 242 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE-VHLDMVEVMV 242 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC-cccccCceEE
Confidence 89999999999999999999998888899999999987766655553 468999999999998877644 5689999999
Q ss_pred EcccccccccccHHHHHHHHHhCCc--cceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCCh
Q 013727 163 LDEADRLLNDDFEKSLDEILNVIPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK 240 (437)
Q Consensus 163 iDE~h~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (437)
|||+|++++.+|...+..++..++. ..|++++|||++..+..+...+..++..+...........+.+.+..+....+
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDK 322 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhH
Confidence 9999999999999999999988864 56999999999999999999999888887766655555566677777777777
Q ss_pred HHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCC
Q 013727 241 DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP 320 (437)
Q Consensus 241 ~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~ 320 (437)
...+..++......++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|
T Consensus 323 ~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 323 YKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 77788888877778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCHHHHH
Q 013727 321 SVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEEEVL 387 (437)
Q Consensus 321 ~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 387 (437)
++++||+++.|.|..+|+||+||+||.|.+|.+++++..+|...+..+++.++.+++ ....+.+++
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~ 468 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS-CEMPPAELL 468 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc-ccCCcHHHh
Confidence 999999999999999999999999999999999999999999999999999998874 333344443
No 21
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-64 Score=437.53 Aligned_cols=376 Identities=35% Similarity=0.513 Sum_probs=336.2
Q ss_pred cccccCccc-cCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 013727 4 EKEVKTFKE-LGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (437)
Q Consensus 4 ~~~~~~f~~-~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 82 (437)
++|.-+|++ ++.-+++.+.+++.||.+|+|+|.++||.+++|+|++..+.||+|||++|++|.+-++..++.......+
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 456667764 5778999999999999999999999999999999999999999999999999998888877666666678
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEE
Q 013727 83 FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (437)
Q Consensus 83 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 162 (437)
+.+|+++||++|+.|+.-+..++... ++...+++||....++...+..+.+|+++||++|.++...+ .+++..+.++|
T Consensus 295 p~~lvl~ptreLalqie~e~~kysyn-g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n-~i~l~siTYlV 372 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSYN-GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN-VINLASITYLV 372 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhhc-CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC-eeeeeeeEEEE
Confidence 89999999999999999988887543 68888999999999999999999999999999999877664 46899999999
Q ss_pred EcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccc-cccccCceEEEEEccCCChH
Q 013727 163 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK-YSTVDTLKQQYRFVPAKYKD 241 (437)
Q Consensus 163 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 241 (437)
+||||+|++++|.+++.+|+-.+.+.+|+++.|||+|+.+..++..++.+|..+.+... ........|.+.....+.+.
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~ 452 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL 452 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH
Confidence 99999999999999999999999999999999999999999999999999988877654 34445666777554555566
Q ss_pred HHHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCC
Q 013727 242 CYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP 320 (437)
Q Consensus 242 ~~~~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~ 320 (437)
..+..++... ...++||||.++..|..++.-|.-.|+.+..+||+-++.+|+..++.|++|+++||||||++++|+|++
T Consensus 453 ~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~ 532 (629)
T KOG0336|consen 453 EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVP 532 (629)
T ss_pred HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCch
Confidence 6666666655 568999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCC
Q 013727 321 SVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPA 381 (437)
Q Consensus 321 ~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 381 (437)
+++||+|||+|.+.++|+||+||+||+|+.|.+++++...|-..+..|.+.+.+.-+++|.
T Consensus 533 DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPd 593 (629)
T KOG0336|consen 533 DITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPD 593 (629)
T ss_pred hcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcH
Confidence 9999999999999999999999999999999999999999999999988888877766663
No 22
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-63 Score=446.18 Aligned_cols=363 Identities=38% Similarity=0.584 Sum_probs=321.9
Q ss_pred CccccCCCHHHHHHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 013727 9 TFKELGLRDELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (437)
Q Consensus 9 ~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lv 87 (437)
.|..|||++.+...|+. |++..||.+|.++||.+++|+|++|.++||||||++|++|+++.+......-.+..+..+||
T Consensus 137 ~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALV 216 (708)
T KOG0348|consen 137 AFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALV 216 (708)
T ss_pred cchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEE
Confidence 69999999999999986 89999999999999999999999999999999999999999999998766555668999999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCC-cEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccc
Q 013727 88 LSPTRELAIQISEQFEALGSGIS-LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (437)
Q Consensus 88 l~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~ 166 (437)
++|||||+.|+++.++++...+- +..+.+.||.....+...+.++++|+|+|||+|++++.+.+.+.++++++||+||+
T Consensus 217 ivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEa 296 (708)
T KOG0348|consen 217 IVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEA 296 (708)
T ss_pred EechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecch
Confidence 99999999999999999987654 34467888888888888899999999999999999999999899999999999999
Q ss_pred ccccccccHHHHHHHHHhCC-------------ccceEEEEeecCchHHHHHHHHhcCCCcEEEcccc------------
Q 013727 167 DRLLNDDFEKSLDEILNVIP-------------RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK------------ 221 (437)
Q Consensus 167 h~~~~~~~~~~~~~i~~~~~-------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~------------ 221 (437)
|++++.+|...+..|++.+. ...|.+++|||+++.+.+++...+.+|..+.....
T Consensus 297 DrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ 376 (708)
T KOG0348|consen 297 DRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQ 376 (708)
T ss_pred hHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhh
Confidence 99999999999999998772 23578999999999999999999999988872111
Q ss_pred -------------cccccCceEEEEEccCCChHHHHHHHHHhc----CCCcEEEEecchHHHHHHHHHHHhc--------
Q 013727 222 -------------YSTVDTLKQQYRFVPAKYKDCYLVYILTEV----SASSTMVFTRTCDATRLLALMLRNL-------- 276 (437)
Q Consensus 222 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~iVf~~s~~~~~~l~~~l~~~-------- 276 (437)
...+..+.+.|..+|...+...+..++... ...++|||+++.+.++.-+..|...
T Consensus 377 ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~ 456 (708)
T KOG0348|consen 377 EVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGS 456 (708)
T ss_pred hcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccc
Confidence 123446778899999998887777666543 4568999999999999888877642
Q ss_pred --------------CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhh
Q 013727 277 --------------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVG 342 (437)
Q Consensus 277 --------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~G 342 (437)
+.++..+||+|++++|..+++.|...+..||+|||++++|+|+|+|+.||.||+|.++++|+||+|
T Consensus 457 s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvG 536 (708)
T KOG0348|consen 457 SGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVG 536 (708)
T ss_pred cCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhh
Confidence 345788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEEEEccccHHHHHHHHHH
Q 013727 343 RTARAGRTGVAISLVNQYELEWYLQIEKL 371 (437)
Q Consensus 343 R~~R~g~~g~~i~~~~~~~~~~~~~l~~~ 371 (437)
|+.|+|.+|.+++|..|.+.+++..+...
T Consensus 537 RTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 537 RTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred hhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 99999999999999999999977776654
No 23
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-63 Score=449.92 Aligned_cols=376 Identities=36% Similarity=0.530 Sum_probs=345.1
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcC--C--
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQR--T-- 79 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~--~-- 79 (437)
+.++.+|++-.+.+.+...++..||..|||+|+.++|.+..|++++++|+||||||.+|++|++.++.+...... .
T Consensus 70 p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~ 149 (482)
T KOG0335|consen 70 PPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGG 149 (482)
T ss_pred CCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCC
Confidence 456668998899999999999999999999999999999999999999999999999999999999987643221 1
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCcc
Q 013727 80 VPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLK 159 (437)
Q Consensus 80 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~ 159 (437)
...++++|++|||+|+.|++++.+++.....+.+...+|+.+...+.....++++|+|+||++|.+.+...+ +.+.+++
T Consensus 150 ~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~-i~l~~~k 228 (482)
T KOG0335|consen 150 GVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK-ISLDNCK 228 (482)
T ss_pred CCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce-eehhhCc
Confidence 135889999999999999999999999888999999999999999999999999999999999999887754 7899999
Q ss_pred EEEEcccccccc-cccHHHHHHHHHhCCc----cceEEEEeecCchHHHHHHHHhcCC-CcEEEcccccccccCceEEEE
Q 013727 160 YLVLDEADRLLN-DDFEKSLDEILNVIPR----MRQTYLFSATMTKKVKKLQRACLKN-PVKIEAASKYSTVDTLKQQYR 233 (437)
Q Consensus 160 ~vViDE~h~~~~-~~~~~~~~~i~~~~~~----~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 233 (437)
++|+||||+|++ ++|.+.+.+|+..... .+|.++||||++..+..++..++.+ +..+.+........++.+.+.
T Consensus 229 ~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~ 308 (482)
T KOG0335|consen 229 FLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKIL 308 (482)
T ss_pred EEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEee
Confidence 999999999999 9999999999988754 6799999999999999999888887 888888888888899999999
Q ss_pred EccCCChHHHHHHHHHhcC----CC-----cEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCc
Q 013727 234 FVPAKYKDCYLVYILTEVS----AS-----STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304 (437)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~~----~~-----~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 304 (437)
++....+...++.++.... .+ +++|||.+++.+..++.+|...++++..+||+-++.+|.+.++.|+.|.+
T Consensus 309 ~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~ 388 (482)
T KOG0335|consen 309 FVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKA 388 (482)
T ss_pred eecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCc
Confidence 9999999999999987553 23 79999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCC
Q 013727 305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFP 380 (437)
Q Consensus 305 ~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 380 (437)
.+||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|..|.+++|++..+....+.|.+.+...-+++|
T Consensus 389 pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP 464 (482)
T KOG0335|consen 389 PVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVP 464 (482)
T ss_pred ceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCc
Confidence 9999999999999999999999999999999999999999999999999999998888888888888766555555
No 24
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-61 Score=427.18 Aligned_cols=389 Identities=35% Similarity=0.502 Sum_probs=337.9
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEE
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (437)
..++|++++|++.+++++.+.|+.+||-+|..+||.++.|+|++..|.||||||.+|++|+++.++..........++.+
T Consensus 17 ~~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa 96 (569)
T KOG0346|consen 17 KEKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSA 96 (569)
T ss_pred hhccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccccccccee
Confidence 34699999999999999999999999999999999999999999999999999999999999999987766556678899
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCC--CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEE
Q 013727 86 CVLSPTRELAIQISEQFEALGSGI--SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 86 lvl~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 163 (437)
+|++||++|+.|++..+.++.... .+++..+....+.......+...++|||+||++++.++.......+..+.++|+
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVv 176 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVV 176 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEe
Confidence 999999999999999988875443 355556665666555667788889999999999999998766567888999999
Q ss_pred cccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEccccccc-ccCceEEEEEccCCChHH
Q 013727 164 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST-VDTLKQQYRFVPAKYKDC 242 (437)
Q Consensus 164 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 242 (437)
||||.++..+|...+..+.+.+|+..|.++||||+++++..+.+.++.+|+.+........ .+.+.|.+..+.+..+..
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH
Confidence 9999999999999999999999999999999999999999999999999999877765443 456777778888666666
Q ss_pred HHHHHHHh-cCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC---------
Q 013727 243 YLVYILTE-VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV--------- 312 (437)
Q Consensus 243 ~~~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~--------- 312 (437)
.+..+++- .-.++.|||+|+++.+.++.-.|++.|++..+++|.++...|-.++++|+.|-++|+||||.
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 66666553 35689999999999999999999999999999999999999999999999999999999992
Q ss_pred --------------------------CCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHH
Q 013727 313 --------------------------ASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYL 366 (437)
Q Consensus 313 --------------------------~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~ 366 (437)
.++|||+.+|..|+|+|+|.++..|+||+||++|++++|.+++|+.|.+..-..
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKE 416 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhh
Confidence 579999999999999999999999999999999999999999999999887656
Q ss_pred HHHHHhCC--------CCCCCCCCHHHHHHHHHhHH
Q 013727 367 QIEKLIGK--------KLPEFPAEEEEVLLLLERVT 394 (437)
Q Consensus 367 ~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 394 (437)
.++..+.. .+.+++...+++.....+..
T Consensus 417 ~le~~~~d~~~~~~~qilqPY~f~~eevesfryR~e 452 (569)
T KOG0346|consen 417 SLESILKDENRQEGRQILQPYQFRMEEVESFRYRAE 452 (569)
T ss_pred HHHHHHhhHHhhcCccccccccchHHHHHHHHHHHH
Confidence 66555432 45666666666655444433
No 25
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.6e-60 Score=455.39 Aligned_cols=371 Identities=33% Similarity=0.535 Sum_probs=329.1
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEE
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (437)
...+|+++++++.+.++|.++||..|+++|.++++.++.++++++.+|||||||++|++|++..+.... .+.++
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~------~~~~~ 99 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL------NACQA 99 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC------CCceE
Confidence 357899999999999999999999999999999999999999999999999999999999998764321 45689
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcc
Q 013727 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (437)
Q Consensus 86 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 165 (437)
||++|+++|+.|+.+.+..++...++.+..+.|+.........+..+++|+|+||++|.+.+.... +.++++++||+||
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~i~lvViDE 178 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH-LRVDDLKLFILDE 178 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC-cccccccEEEEec
Confidence 999999999999999999998877888888899988777777777788999999999998887644 5789999999999
Q ss_pred cccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccC-CChHHHH
Q 013727 166 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYL 244 (437)
Q Consensus 166 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 244 (437)
+|++.+.++...+..++..+++..|++++|||+++.+..+...++.++..+...........+.+.+..++. ..+...+
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTL 258 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHH
Confidence 999999899988999999999999999999999999888888888888776655544444555555555543 3355556
Q ss_pred HHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCE
Q 013727 245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 324 (437)
Q Consensus 245 ~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~ 324 (437)
..++......++||||++++.++.+++.|...+..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 259 ~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 259 CDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 66666666788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCH
Q 013727 325 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEE 383 (437)
Q Consensus 325 Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 383 (437)
||++|+|.+..+|+||+||+||.|..|.|++++.+.+.+.+..+++.++..+++.+...
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~ 397 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEV 397 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcch
Confidence 99999999999999999999999999999999999999999999999999888776554
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-61 Score=429.99 Aligned_cols=386 Identities=34% Similarity=0.526 Sum_probs=352.8
Q ss_pred CccccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCC
Q 013727 2 AEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVP 81 (437)
Q Consensus 2 ~~~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~ 81 (437)
+.++++++|+.++++..+.+++.+.-|.+|||+|.+++|..++|++++-.|.||||||.+|+.|++.++...+...+ ..
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~-g~ 295 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKP-GE 295 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcC-CC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999987664432 36
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEE
Q 013727 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (437)
Q Consensus 82 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~v 161 (437)
++..||+||||+|+.|++.++++|+...++++++++||.+..++...+..++.||||||++|++++... ..++.++.++
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK-atn~~rvS~L 374 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK-ATNLSRVSYL 374 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh-cccceeeeEE
Confidence 788999999999999999999999999999999999999999999999999999999999999998774 4689999999
Q ss_pred EEcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCCh-
Q 013727 162 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK- 240 (437)
Q Consensus 162 ViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 240 (437)
|+||+++|.+++|..++..|...+.+.+|+++||||++..++.+++.++.+|+.+...........+.|.+..+++..+
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~K 454 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKK 454 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999888777777788888888887653
Q ss_pred HHHHH-HHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCC
Q 013727 241 DCYLV-YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDI 319 (437)
Q Consensus 241 ~~~~~-~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~ 319 (437)
...+. .+......+++|+|+.-...++.++..|+-.++++..+||++.+.+|.+++..|+++...|||+||+.++|+|+
T Consensus 455 l~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI 534 (731)
T KOG0339|consen 455 LNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDI 534 (731)
T ss_pred HHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCc
Confidence 33333 33344466899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Q 013727 320 PSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEEEVLLL 389 (437)
Q Consensus 320 ~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 389 (437)
+.+..||+||.-.+.+.|.||+||+||+|.+|++++++++.|..+.-.|-+.+.---+.+|.+..++.+.
T Consensus 535 ~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk 604 (731)
T KOG0339|consen 535 PSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMK 604 (731)
T ss_pred cccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhh
Confidence 9999999999999999999999999999999999999999999988888888877777777666555443
No 27
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.3e-63 Score=430.75 Aligned_cols=376 Identities=35% Similarity=0.570 Sum_probs=337.4
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhh--cCCCC
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAEN--QRTVP 81 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~--~~~~~ 81 (437)
+.|+++|.+..+|..+++.|++.|+..|||+|.+-+|.+++|+|.+..|-||||||++|.+|++...++.... .....
T Consensus 166 pPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~E 245 (610)
T KOG0341|consen 166 PPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGE 245 (610)
T ss_pred CCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCC
Confidence 6789999999999999999999999999999999999999999999999999999999999998887765432 23457
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcCC------CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCC
Q 013727 82 AFFACVLSPTRELAIQISEQFEALGSGI------SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSL 155 (437)
Q Consensus 82 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~ 155 (437)
++..||+||+|+||.|+.+.+..|...+ .+++.++.||.+...+......+.+|+|+||++|.+++... ..++
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK-~~sL 324 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKK-IMSL 324 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHh-hccH
Confidence 8899999999999999999888775432 47788899999999999999999999999999999999874 4678
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEc
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFV 235 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (437)
.-++++.+||||+|++++|...+..++..+...+|+++||||+|..++.++++.+-.|+.+++.......-+..|...++
T Consensus 325 d~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyV 404 (610)
T KOG0341|consen 325 DACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYV 404 (610)
T ss_pred HHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999998877666666777777
Q ss_pred cCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCC
Q 013727 236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 315 (437)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~ 315 (437)
..+.+..+++..+++. ..++||||..+..+..++++|--.|..++.+||+-.+++|...++.|+.|+.+||||||+++.
T Consensus 405 kqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASK 483 (610)
T KOG0341|consen 405 KQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASK 483 (610)
T ss_pred HhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhc
Confidence 7888877777777654 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccc-cHHHHHHHHHHhCCCCCCCCC
Q 013727 316 GLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY-ELEWYLQIEKLIGKKLPEFPA 381 (437)
Q Consensus 316 Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 381 (437)
|+|+|++.||||||+|...+.|+||+||+||.|++|.+.+|++.. +...+.++...+...-.++|.
T Consensus 484 GLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~ 550 (610)
T KOG0341|consen 484 GLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPP 550 (610)
T ss_pred cCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCH
Confidence 999999999999999999999999999999999999999999875 445566666666554444443
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-61 Score=439.24 Aligned_cols=403 Identities=38% Similarity=0.597 Sum_probs=341.0
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhc-------CC
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQ-------RT 79 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~-------~~ 79 (437)
-.|..|+||.+++++|..+||..||++|...+|++..| .|++..|.||||||++|.+||++.+.+..... ..
T Consensus 181 sAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k 260 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAK 260 (731)
T ss_pred HHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhc
Confidence 35889999999999999999999999999999999999 79999999999999999999999665422110 11
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCC--CCCC
Q 013727 80 VPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF--SLGT 157 (437)
Q Consensus 80 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~--~~~~ 157 (437)
...+.+||++|||+||.|+...+...+...++++..++||.....+.+.+.+.++|||+|||+|+.++.....+ .+.+
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 261 YVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred cCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 12335999999999999999999999999999999999999999999999999999999999999998776542 6788
Q ss_pred ccEEEEcccccccccccHHHHHHHHHhCC-----ccceEEEEeecCchH---------------------HHHHHHHh--
Q 013727 158 LKYLVLDEADRLLNDDFEKSLDEILNVIP-----RMRQTYLFSATMTKK---------------------VKKLQRAC-- 209 (437)
Q Consensus 158 ~~~vViDE~h~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SAT~~~~---------------------~~~~~~~~-- 209 (437)
+.++|+||+|+|+..++...+..+++.+. ..+|.+.||||++-. ++.+....
T Consensus 341 vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~ 420 (731)
T KOG0347|consen 341 VKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGF 420 (731)
T ss_pred ceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCc
Confidence 99999999999999999999999888775 456999999997532 22222221
Q ss_pred cCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCH
Q 013727 210 LKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQ 289 (437)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~ 289 (437)
..+|..+...........+....+.|+...+..++.+++...+ +++|||||+++.+.+++-+|+.++++...+|+.|.+
T Consensus 421 ~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~Q 499 (731)
T KOG0347|consen 421 RGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQ 499 (731)
T ss_pred cCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecC-CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHH
Confidence 2455666666655555555555666666667766666666554 679999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHH
Q 013727 290 SKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIE 369 (437)
Q Consensus 290 ~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~ 369 (437)
.+|.+.+++|++....||||||++++|+|+|+|+|||||..|.+.+-|+||.||+.|++..|.+++++.|.+...+..|.
T Consensus 500 KqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ 579 (731)
T KOG0347|consen 500 KQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLC 579 (731)
T ss_pred HHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCC--CCCCCCCCHHHHHHHHHhHHHhhhhhhHhhhhccCcc
Q 013727 370 KLIGK--KLPEFPAEEEEVLLLLERVTEAKRISQMTIKDSGNKR 411 (437)
Q Consensus 370 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (437)
+-+.+ .++-+|....-+..+-+++.-|..+...+++...-++
T Consensus 580 ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~~e~k~~~v~~ 623 (731)
T KOG0347|consen 580 KTLKKKEDLPIFPVETDIMDALKERVRLAREIDKLEIKSKRVRK 623 (731)
T ss_pred HHHhhccCCCceeccHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 98876 3556777666666677778778777777766654433
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-59 Score=404.91 Aligned_cols=367 Identities=31% Similarity=0.492 Sum_probs=325.8
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~ 83 (437)
.+.+|++|+|.|+++++|..|||..|+.+|..++|.++.. ++.+.++..|+|||.+|.+.++.++.... ..+
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~------~~P 161 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV------VVP 161 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc------cCC
Confidence 3578999999999999999999999999999999999986 78999999999999999999998876443 667
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEE
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 163 (437)
+++.++|||+||.|+-+.+.+++...++.......+.....- . .-..+|+|+||+.+.++....+.+.+..++.+|+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~--~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVl 238 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-N--KLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVL 238 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-C--cchhheeeCCCccHHHHHHHHHhhChhhceEEEe
Confidence 888999999999999999999999888888777766521110 0 0135799999999999988766678999999999
Q ss_pred cccccccc-cccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCC-hH
Q 013727 164 DEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY-KD 241 (437)
Q Consensus 164 DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 241 (437)
||||.|++ .+|.+.-..|...+|+..|.++||||+...+..++.....++..+....+.....++.+.|..++.+. |.
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~ 318 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKY 318 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHH
Confidence 99999988 67899999999999999999999999999999999999999999999998888899999999998765 45
Q ss_pred HHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCC
Q 013727 242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (437)
Q Consensus 242 ~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~ 321 (437)
..+..+.....=+..||||.++..|..++..+...|..+..+||+|...+|..++..|+.|..+|||+|+++++|||++.
T Consensus 319 ~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~q 398 (477)
T KOG0332|consen 319 QALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQ 398 (477)
T ss_pred HHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccce
Confidence 55556555556688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCC------ChhhHHHHhhhcccCCCCceEEEEEccc-cHHHHHHHHHHhCCCCCCCCC
Q 013727 322 VDMVINYDIPT------NSKDYIHRVGRTARAGRTGVAISLVNQY-ELEWYLQIEKLIGKKLPEFPA 381 (437)
Q Consensus 322 ~~~Vi~~~~p~------s~~~~~Q~~GR~~R~g~~g~~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 381 (437)
+++|||||+|. +++.|+||+||+||.|++|.++.+++.. +...+..|+++++..+.....
T Consensus 399 Vs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 399 VSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred EEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 99999999994 6789999999999999999999988764 556677999999887776654
No 30
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-58 Score=451.13 Aligned_cols=377 Identities=34% Similarity=0.551 Sum_probs=345.9
Q ss_pred ccccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 013727 3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (437)
Q Consensus 3 ~~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 82 (437)
-++|+++|.++|++..++..++++||..|+++|.+|||++++|+++|.+|.||||||++|++|++.+...++.. ..+.+
T Consensus 360 ~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~-~~gdG 438 (997)
T KOG0334|consen 360 CPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL-EEGDG 438 (997)
T ss_pred CCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCCh-hhCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999666554322 23458
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCC--CCCCCCccE
Q 013727 83 FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK--GFSLGTLKY 160 (437)
Q Consensus 83 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~--~~~~~~~~~ 160 (437)
+.++|++||++|+.|+.+.+.+|...+++.+++++|+.....+...+.+++.|+||||++.++.+..+. ..++.++.+
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~ 518 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTY 518 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccce
Confidence 999999999999999999999999999999999999999999999999999999999999999775433 335666779
Q ss_pred EEEcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEcc-CCC
Q 013727 161 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKY 239 (437)
Q Consensus 161 vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 239 (437)
+|+||||+|++++|.+....|+..+++.+|+++||||++..+..++...+..|+.+.+.........+.+.+..++ ...
T Consensus 519 lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~e 598 (997)
T KOG0334|consen 519 LVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENE 598 (997)
T ss_pred eeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchH
Confidence 9999999999999999999999999999999999999999999999999999999988887777788889998888 667
Q ss_pred hHHHHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCC
Q 013727 240 KDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLD 318 (437)
Q Consensus 240 ~~~~~~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid 318 (437)
+...+..++... ...++||||.+.+.|..+.+.|.+.|+.|..+||+.++.+|...+++|+++.+.+||+|+++++|+|
T Consensus 599 Kf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLd 678 (997)
T KOG0334|consen 599 KFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLD 678 (997)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccc
Confidence 777788877755 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCC
Q 013727 319 IPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFP 380 (437)
Q Consensus 319 ~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 380 (437)
++.+.+|||||.|...++|+||.||+||+|.+|.+++|+.+++..+..+|.+.+...-...|
T Consensus 679 v~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 679 VKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred cccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999954444444
No 31
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-56 Score=402.06 Aligned_cols=365 Identities=34% Similarity=0.541 Sum_probs=312.8
Q ss_pred ccccCccccCCCHHHH----------HHHHhCCCCCChHHHHHHHHhhhc---------CCcEEEEcCCCchHHHHHHHH
Q 013727 5 KEVKTFKELGLRDELV----------EACENVGWKTPSKIQAEAIPHALE---------GKDLIGLAQTGSGKTGAFALP 65 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~----------~~l~~~g~~~~~~~Q~~~~~~~~~---------~~~~lv~~~tGsGKT~~~~~~ 65 (437)
+...-|+.++++..+. +.+.++++...+|+|..++|+++. .+|+.|.||||||||++|.+|
T Consensus 124 nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iP 203 (620)
T KOG0350|consen 124 NSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIP 203 (620)
T ss_pred CceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhH
Confidence 3444578888776654 449999999999999999999963 479999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCC-----CCcEEEECc
Q 013727 66 ILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGK-----RPHIVVATP 140 (437)
Q Consensus 66 ~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~iiv~Tp 140 (437)
|++.+...+. ..-|++|++|+++|+.|+++.|..++...++.|+.+.|..+...+...+.. ..||+|+||
T Consensus 204 IVQ~L~~R~v-----~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTP 278 (620)
T KOG0350|consen 204 IVQLLSSRPV-----KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATP 278 (620)
T ss_pred HHHHHccCCc-----cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCc
Confidence 9998875432 567999999999999999999999999999999999999888877777754 338999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCC----------------------------------
Q 013727 141 GRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP---------------------------------- 186 (437)
Q Consensus 141 ~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~---------------------------------- 186 (437)
++|++|+.+.+.|.+.+++++||||||++++..|..++..+...+.
T Consensus 279 GRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~ 358 (620)
T KOG0350|consen 279 GRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLY 358 (620)
T ss_pred hHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcC
Confidence 9999999998999999999999999999999766665554443332
Q ss_pred ccceEEEEeecCchHHHHHHHHhcCCCcEEEcc----cccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecc
Q 013727 187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA----SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRT 262 (437)
Q Consensus 187 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s 262 (437)
+..+.+.+|||+......+...-++.|....+. ..+..+..+.+.+..+....+...+..++......++|+|+++
T Consensus 359 ~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S 438 (620)
T KOG0350|consen 359 PPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNS 438 (620)
T ss_pred chhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecc
Confidence 112367899999988889999888888655544 3455556676777777777888888889999999999999999
Q ss_pred hHHHHHHHHHHH----hcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHH
Q 013727 263 CDATRLLALMLR----NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYI 338 (437)
Q Consensus 263 ~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~ 338 (437)
.+.+.+++..|+ ....++..+.|.++...|...+..|+.|++++|||+|++++|+|+.+++.|||||+|.+...|+
T Consensus 439 ~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyV 518 (620)
T KOG0350|consen 439 VSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYV 518 (620)
T ss_pred hHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHH
Confidence 999999999988 3355667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCC
Q 013727 339 HRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGK 374 (437)
Q Consensus 339 Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~ 374 (437)
||+||++|+|+.|.|+++....+...+.++.+..+.
T Consensus 519 HR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 519 HRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred HhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999999999998888887777655
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-57 Score=394.30 Aligned_cols=371 Identities=34% Similarity=0.556 Sum_probs=344.2
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEE
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (437)
-..+|++++|+++++++++..||++|+.+|+.|+..+..|.|+.+++++|+|||.+|.+++++.+.-.. ....+
T Consensus 24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~------ke~qa 97 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV------KETQA 97 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch------HHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999998874322 56678
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhC-CCCcEEEECchHHHHHHhcCCCCCCCCccEEEEc
Q 013727 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (437)
Q Consensus 86 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 164 (437)
++++|+++|+.|+.+....++...+.++..+.||.....+...+. ..++|+|+||+++.+.+... .+....+.++|+|
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlD 176 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLD 176 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeec
Confidence 999999999999999999999999999999999888775554444 45899999999999998876 4678889999999
Q ss_pred ccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHH
Q 013727 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244 (437)
Q Consensus 165 E~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (437)
|+|.|+..+|.+.+..++..+|+.-|++++|||.+.++....+.++.+|..+....+......+.+.|..+..+.+...+
T Consensus 177 EaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l 256 (397)
T KOG0327|consen 177 EADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTL 256 (397)
T ss_pred chHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999998888888999999888888888877
Q ss_pred HHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCE
Q 013727 245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 324 (437)
Q Consensus 245 ~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~ 324 (437)
..+.. .-...+||||+++.+..+...|...+..+..+|+++.+.+|..++..|+.|..+|||+|+.+++|+|+..+..
T Consensus 257 ~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~sl 334 (397)
T KOG0327|consen 257 CDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSL 334 (397)
T ss_pred HHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcce
Confidence 77777 5567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCHHH
Q 013727 325 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEEE 385 (437)
Q Consensus 325 Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 385 (437)
||+|+.|...+.|+||+||+||.|.+|.++.++...+...+.+++++++..++++|....+
T Consensus 335 vinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 335 VVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred eeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhh
Confidence 9999999999999999999999999999999999999999999999999999999987654
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.5e-54 Score=435.78 Aligned_cols=353 Identities=21% Similarity=0.241 Sum_probs=279.1
Q ss_pred CCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 013727 14 GLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 93 (437)
Q Consensus 14 ~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~ 93 (437)
.+++++.++|+++||.+|+++|.++++.+++|+|+++.+|||||||++|++|++..+... ++.++||++||++
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-------~~~~aL~l~Ptra 92 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-------PRATALYLAPTKA 92 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-------CCcEEEEEcChHH
Confidence 389999999999999999999999999999999999999999999999999999998753 4578999999999
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhc-CCC--CCCCCccEEEEccccccc
Q 013727 94 LAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTN-TKG--FSLGTLKYLVLDEADRLL 170 (437)
Q Consensus 94 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~-~~~--~~~~~~~~vViDE~h~~~ 170 (437)
|+.|+.+.++.++ ..++++..+.|+..... ...+..+++|+|+||++|...+.. +.. ..++++++||+||+|.+.
T Consensus 93 La~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~-r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~ 170 (742)
T TIGR03817 93 LAADQLRAVRELT-LRGVRPATYDGDTPTEE-RRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYR 170 (742)
T ss_pred HHHHHHHHHHHhc-cCCeEEEEEeCCCCHHH-HHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhcc
Confidence 9999999999987 44688888888776543 345556799999999998653322 111 127889999999999986
Q ss_pred ccccHHHHHHHHHh-------CCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccC------
Q 013727 171 NDDFEKSLDEILNV-------IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA------ 237 (437)
Q Consensus 171 ~~~~~~~~~~i~~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 237 (437)
+ .|+..+..++.. .+..+|++++|||+++..+ +...++..+..+. ..+... ........+.+.
T Consensus 171 g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~~~-~~~~~~~~~~p~~~~~~~ 246 (742)
T TIGR03817 171 G-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDGSP-RGARTVALWEPPLTELTG 246 (742)
T ss_pred C-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCCCC-cCceEEEEecCCcccccc
Confidence 6 466655544433 3566899999999998865 4555666665442 222111 111222222221
Q ss_pred -----------CChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhc--------CCceEeccCCCCHHHHHHHHHH
Q 013727 238 -----------KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--------GQRAIPISGHMSQSKRLGALNK 298 (437)
Q Consensus 238 -----------~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~ 298 (437)
..+...+..++. .+.++||||+|++.++.++..|+.. +..+..+||++++++|..++++
T Consensus 247 ~~~~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 247 ENGAPVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred ccccccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 012223333443 3679999999999999999988764 5678899999999999999999
Q ss_pred hhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEc--cccHHHHHHHHHHhCCCC
Q 013727 299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVN--QYELEWYLQIEKLIGKKL 376 (437)
Q Consensus 299 f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~--~~~~~~~~~l~~~~~~~~ 376 (437)
|++|+.++||||+++++|||++++++||+++.|.+..+|+||+||+||.|+.|.+++++. +.|...+..+++.++..+
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~ 404 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPV 404 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999986 455666777788888877
Q ss_pred CCCCC
Q 013727 377 PEFPA 381 (437)
Q Consensus 377 ~~~~~ 381 (437)
+....
T Consensus 405 e~~~~ 409 (742)
T TIGR03817 405 EATVF 409 (742)
T ss_pred cccee
Confidence 66543
No 34
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-56 Score=389.64 Aligned_cols=365 Identities=38% Similarity=0.613 Sum_probs=342.4
Q ss_pred ccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEE
Q 013727 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (437)
Q Consensus 7 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~l 86 (437)
..+|+.+||+..+.+++..-||+.|+|+|++.+|.++.+++++..+-||||||.+|++|+++.+..... .+.+++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~-----~g~Ral 94 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQ-----TGLRAL 94 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccc-----ccccee
Confidence 458999999999999999999999999999999999999999999999999999999999999987542 678999
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccc
Q 013727 87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (437)
Q Consensus 87 vl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~ 166 (437)
++.||++|+.|..+.++.++...++.+.+++||.+..+++..+..++|||++||+++......- .+.++.+.+||+||+
T Consensus 95 ilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem-~l~l~sveyVVfdEa 173 (529)
T KOG0337|consen 95 ILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM-TLTLSSVEYVVFDEA 173 (529)
T ss_pred eccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe-eccccceeeeeehhh
Confidence 9999999999999999999999999999999999999999999999999999999997755443 267899999999999
Q ss_pred ccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHH
Q 013727 167 DRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246 (437)
Q Consensus 167 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (437)
|+++.++|.+.+..++..+|..+|.++||||+|..+..+++..+.+|..+....+....+.+...+..+....+...++.
T Consensus 174 drlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~ 253 (529)
T KOG0337|consen 174 DRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLS 253 (529)
T ss_pred hHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987777777777788888899999999999
Q ss_pred HHHhcC-CCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEE
Q 013727 247 ILTEVS-ASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV 325 (437)
Q Consensus 247 ~l~~~~-~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~V 325 (437)
++.... ...++|||.+..+++.+...|+..|+.+..+.|.+.+.-|...+.+|+.++..+||.|+++++|+|+|..+.|
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 988764 4679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCC
Q 013727 326 INYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLP 377 (437)
Q Consensus 326 i~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~ 377 (437)
||||.|.+...|+||+||+.|+|..|.+++++.+++..++.+|..++++++.
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCcee
Confidence 9999999999999999999999999999999999999999999999988654
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.4e-54 Score=399.64 Aligned_cols=356 Identities=29% Similarity=0.484 Sum_probs=323.5
Q ss_pred ccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 013727 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (437)
....+|++|-|...++.+|+..+|..|+++|..|||.++.+-|++|++..|+|||++|...++..+.... ...+
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~------~~~q 95 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS------SHIQ 95 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc------Ccce
Confidence 4567899999999999999999999999999999999999999999999999999999988888776433 6778
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcC-CCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEE
Q 013727 85 ACVLSPTRELAIQISEQFEALGSG-ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 163 (437)
.+|++|||+++.|+.+.+..++.. .+.++..+.||+........+. .++|+|+|||++..++... .+++++++++|+
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~-~~n~s~vrlfVL 173 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELG-AMNMSHVRLFVL 173 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhc-CCCccceeEEEe
Confidence 999999999999999999999874 4899999999998877766665 4889999999999877764 479999999999
Q ss_pred cccccccc-cccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCC---
Q 013727 164 DEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY--- 239 (437)
Q Consensus 164 DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 239 (437)
||||.+++ ..|...+..|++.+|..+|++++|||.+..+..+...++.+|..+.........-.+.|.+..++...
T Consensus 174 DEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsv 253 (980)
T KOG4284|consen 174 DEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSV 253 (980)
T ss_pred ccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchH
Confidence 99999999 78999999999999999999999999999999999999999999999988888888998887776643
Q ss_pred -----hHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCC
Q 013727 240 -----KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVAS 314 (437)
Q Consensus 240 -----~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 314 (437)
+...+..++...+-..+||||+....|+-++.+|+..|+.|..+.|.|++.+|..+++.++.-.++|||+||..+
T Consensus 254 eemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLta 333 (980)
T KOG4284|consen 254 EEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTA 333 (980)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhh
Confidence 455666777777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccH-HHHHHH
Q 013727 315 RGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL-EWYLQI 368 (437)
Q Consensus 315 ~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~-~~~~~l 368 (437)
+|||-+++++|||.|.|.+.++|.||||||||.|..|.+++++..... ..+..+
T Consensus 334 RGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 334 RGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred ccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 999999999999999999999999999999999999999999977544 444443
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.5e-51 Score=408.88 Aligned_cols=340 Identities=21% Similarity=0.254 Sum_probs=262.0
Q ss_pred Ccc--ccCCCHHHHHHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEE
Q 013727 9 TFK--ELGLRDELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (437)
Q Consensus 9 ~f~--~~~l~~~~~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (437)
+|. .++.+..+...++. +|+..+||+|.++|+.++.|+|+++.+|||+|||++|++|++. ....+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~------------~~GiT 503 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI------------CPGIT 503 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH------------cCCcE
Confidence 466 45666777777765 8999999999999999999999999999999999999999985 34569
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhC------CCCcEEEECchHHHH--H-HhcCCCC-CC
Q 013727 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALG------KRPHIVVATPGRLMD--H-LTNTKGF-SL 155 (437)
Q Consensus 86 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~iiv~Tp~~l~~--~-l~~~~~~-~~ 155 (437)
|||+|+++|+.++...+... ++....+.++.....+...+. ..++|+|+||++|.. . +.....+ ..
T Consensus 504 LVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~ 579 (1195)
T PLN03137 504 LVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSR 579 (1195)
T ss_pred EEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhc
Confidence 99999999998766666553 588888989887655443322 468999999999852 1 1111111 23
Q ss_pred CCccEEEEcccccccccc--cHHHHHHH--HHhCCccceEEEEeecCchHHHHHHHHhcC--CCcEEEcccccccccCce
Q 013727 156 GTLKYLVLDEADRLLNDD--FEKSLDEI--LNVIPRMRQTYLFSATMTKKVKKLQRACLK--NPVKIEAASKYSTVDTLK 229 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 229 (437)
..+.+|||||||++++++ |++.+..+ +...-+..+++++|||++..+.......+. ++..+... ...+++
T Consensus 580 ~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S---f~RpNL- 655 (1195)
T PLN03137 580 GLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS---FNRPNL- 655 (1195)
T ss_pred cccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc---cCccce-
Confidence 458899999999998854 77776653 222234567999999999887764443333 22222211 111222
Q ss_pred EEEEEccCCCh-HHHHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEE
Q 013727 230 QQYRFVPAKYK-DCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307 (437)
Q Consensus 230 ~~~~~~~~~~~-~~~~~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~il 307 (437)
.|..++...+ ...+..++... .+.++||||.+++.++.++..|...|+.+..+||+|++.+|..+++.|.+|+++||
T Consensus 656 -~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VL 734 (1195)
T PLN03137 656 -WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINII 734 (1195)
T ss_pred -EEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEE
Confidence 2333333222 23344444433 46789999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHH
Q 013727 308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIE 369 (437)
Q Consensus 308 v~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~ 369 (437)
|||+++++|||+|+|++||||++|.|++.|+|++||+||.|..|.|++++...|...+..+.
T Consensus 735 VATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 735 CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred EEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887766555444
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.5e-51 Score=395.45 Aligned_cols=324 Identities=20% Similarity=0.236 Sum_probs=252.0
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+||..|||+|.++++.+++|+++++.+|||||||++|++|++. ....+||++|+++|+.|+.+.+..
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~------------~~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC------------SDGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH------------cCCcEEEEecHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999874 345689999999999999998886
Q ss_pred hhcCCCcEEEEEEcCCChHHHHH---H-hCCCCcEEEECchHHHHHHhcCCCC-CCCCccEEEEcccccccccc--cHHH
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTL---A-LGKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDD--FEKS 177 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~~~iiv~Tp~~l~~~l~~~~~~-~~~~~~~vViDE~h~~~~~~--~~~~ 177 (437)
+ ++.+..+.++........ . ....++|+++||+++.........+ ...++++||+||||++.+++ |+..
T Consensus 74 ~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 74 S----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred c----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHH
Confidence 5 467777777766543221 1 2345899999999875322100111 45779999999999998743 6666
Q ss_pred HHHH---HHhCCccceEEEEeecCchHHHHHHHHhc--CCCcEEEcccccccccCceEEEEEccCC-ChHHHHHHHHH-h
Q 013727 178 LDEI---LNVIPRMRQTYLFSATMTKKVKKLQRACL--KNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILT-E 250 (437)
Q Consensus 178 ~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~ 250 (437)
+..+ ...+ +..+++++|||+++.+.......+ .++..+..... .+++. +...... .....+...+. .
T Consensus 150 ~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~---r~nl~--~~v~~~~~~~~~~l~~~l~~~ 223 (470)
T TIGR00614 150 YKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD---RPNLY--YEVRRKTPKILEDLLRFIRKE 223 (470)
T ss_pred HHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC---CCCcE--EEEEeCCccHHHHHHHHHHHh
Confidence 5543 3344 456799999999987655443332 34444332211 12222 2222222 22333444444 4
Q ss_pred cCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecC
Q 013727 251 VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI 330 (437)
Q Consensus 251 ~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~ 330 (437)
..+..+||||++++.++.++..|+..|+.+..+|++|++.+|..+++.|++|+++|||||+++++|+|+|++++||++++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~ 303 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL 303 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHH
Q 013727 331 PTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEK 370 (437)
Q Consensus 331 p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~ 370 (437)
|.|.+.|+||+||+||.|..|.|++++.+.|...+..+..
T Consensus 304 P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 304 PKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 9999999999999999999999999999988877666543
No 38
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-51 Score=376.36 Aligned_cols=370 Identities=31% Similarity=0.466 Sum_probs=319.2
Q ss_pred cccccCccc----cCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCC
Q 013727 4 EKEVKTFKE----LGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRT 79 (437)
Q Consensus 4 ~~~~~~f~~----~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~ 79 (437)
+.++.+|+. +..++.+++.+...||..|+|+|.+++|.++.+++++.++|||||||++|++|++.++..... ...
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-~~~ 206 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-EKH 206 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-ccC
Confidence 567888887 457889999999999999999999999999999999999999999999999999999987654 222
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHhh--cCCCcEEEEEEcCCChHH-HHHHhCCCCcEEEECchHHHHHHhcCC-CCCC
Q 013727 80 VPAFFACVLSPTRELAIQISEQFEALG--SGISLRCAVLVGGVDMMQ-QTLALGKRPHIVVATPGRLMDHLTNTK-GFSL 155 (437)
Q Consensus 80 ~~~~~~lvl~P~~~L~~q~~~~~~~~~--~~~~~~~~~~~g~~~~~~-~~~~~~~~~~iiv~Tp~~l~~~l~~~~-~~~~ 155 (437)
..+.+++|+.|+++|+.|+++++.++. ...++..+.+........ ........++|+++||.++...+...+ .+++
T Consensus 207 ~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 207 KVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred ccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 367899999999999999999999998 555555555444322221 111222357899999999988886643 2478
Q ss_pred CCccEEEEccccccccc-ccHHHHHHHHHhCCc-cceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEE
Q 013727 156 GTLKYLVLDEADRLLND-DFEKSLDEILNVIPR-MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYR 233 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~-~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (437)
..+.++|+||+|++.+. .|..++..|+..+.. ...+-+||||.+..++.++.....++..+.+.........+.|...
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qelv 366 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELV 366 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhhe
Confidence 99999999999999998 899999999887754 3445689999999999999999999999998888777778888887
Q ss_pred EccCC-ChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHH-HhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC
Q 013727 234 FVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALML-RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311 (437)
Q Consensus 234 ~~~~~-~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 311 (437)
++..+ .+...+..++...-..+++||+.+.+.|..|...| .-.++.+.++||+.++.+|.+.+++|+.|++++||||+
T Consensus 367 F~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTd 446 (593)
T KOG0344|consen 367 FCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTD 446 (593)
T ss_pred eeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehh
Confidence 77765 46677777888888899999999999999999999 56688999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCC
Q 013727 312 VASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGK 374 (437)
Q Consensus 312 ~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~ 374 (437)
++++|+|+.+++.|||||.|.+...|+||+||+||+|+.|.+++||...|......+......
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888877755
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.9e-49 Score=392.35 Aligned_cols=332 Identities=20% Similarity=0.251 Sum_probs=258.5
Q ss_pred CCCHHHHHHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 013727 14 GLRDELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (437)
Q Consensus 14 ~l~~~~~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~ 92 (437)
+......+.|++ +||..|+|+|.++++.++.|+++++.+|||+|||++|++|++. ....++|++|++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~------------~~g~tlVisPl~ 75 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV------------LDGLTLVVSPLI 75 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHH------------cCCCEEEEecHH
Confidence 344455566665 7999999999999999999999999999999999999999885 334689999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHH----hCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccc
Q 013727 93 ELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR 168 (437)
Q Consensus 93 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~ 168 (437)
+|+.|+.+.++.+ ++....+.++......... .....+++++||++|....... .+...++++||+||||+
T Consensus 76 sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVIDEaH~ 150 (607)
T PRK11057 76 SLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVDEAHC 150 (607)
T ss_pred HHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEeCccc
Confidence 9999999998875 4666677776655433221 2245789999999986322111 12345789999999999
Q ss_pred cccc--ccHHHHHHH---HHhCCccceEEEEeecCchHHHHHHHHh--cCCCcEEEcccccccccCceEEEEEccCCChH
Q 013727 169 LLND--DFEKSLDEI---LNVIPRMRQTYLFSATMTKKVKKLQRAC--LKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241 (437)
Q Consensus 169 ~~~~--~~~~~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (437)
+.+. +|++.+..+ ...+ +..+++++|||++.......... +.+|....... ..+++ .+..+......
T Consensus 151 i~~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~---~r~nl--~~~v~~~~~~~ 224 (607)
T PRK11057 151 ISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNI--RYTLVEKFKPL 224 (607)
T ss_pred cccccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC---CCCcc--eeeeeeccchH
Confidence 8874 466555443 3444 35679999999998765433222 33443332211 11222 23333333444
Q ss_pred HHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCC
Q 013727 242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (437)
Q Consensus 242 ~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~ 321 (437)
..+...+....+.++||||++++.++.++..|+..++.+..+|++|++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 225 ~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~ 304 (607)
T PRK11057 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPN 304 (607)
T ss_pred HHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCC
Confidence 55666666677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHH
Q 013727 322 VDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (437)
Q Consensus 322 ~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l 368 (437)
+++||+|+.|.|.+.|+|++||+||.|..|.|++++++.|...+..+
T Consensus 305 V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred cCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887665544
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.4e-48 Score=395.41 Aligned_cols=338 Identities=24% Similarity=0.279 Sum_probs=260.1
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHh-hhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEE
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPH-ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~l 86 (437)
+.|++++||+++.+.+++.||.+|+|+|.++++. +.+++++++++|||||||++|.+|++..+. .+.+++
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---------~~~kal 71 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---------RGGKAL 71 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh---------cCCcEE
Confidence 3689999999999999999999999999999998 778999999999999999999999998885 456799
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccc
Q 013727 87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (437)
Q Consensus 87 vl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~ 166 (437)
|++|+++|+.|+.+.++.+.. .++++..++|+...... ....++|+|+||+++..++.+.. ..+.++++||+||+
T Consensus 72 ~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~-~~l~~v~lvViDE~ 146 (737)
T PRK02362 72 YIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGA-PWLDDITCVVVDEV 146 (737)
T ss_pred EEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcCh-hhhhhcCEEEEECc
Confidence 999999999999999998753 47899999998754332 12358999999999988776543 35788999999999
Q ss_pred ccccccccHHHHHHHHHhC---CccceEEEEeecCchHHHHHHHHhcCCC-------cEEEcccccccccCceEEEEEcc
Q 013727 167 DRLLNDDFEKSLDEILNVI---PRMRQTYLFSATMTKKVKKLQRACLKNP-------VKIEAASKYSTVDTLKQQYRFVP 236 (437)
Q Consensus 167 h~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 236 (437)
|++.+.+++..++.++..+ ....|++++|||+++. ..+..+..... ..+..................+.
T Consensus 147 H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~ 225 (737)
T PRK02362 147 HLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVE 225 (737)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCC
Confidence 9998888888887776554 4567999999999863 44555443221 11100000000000000000111
Q ss_pred CCChHHHHHHHHHh-cCCCcEEEEecchHHHHHHHHHHHhcC------------------------------------Cc
Q 013727 237 AKYKDCYLVYILTE-VSASSTMVFTRTCDATRLLALMLRNLG------------------------------------QR 279 (437)
Q Consensus 237 ~~~~~~~~~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~~------------------------------------~~ 279 (437)
...+...+..+... ..++++||||++++.++.++..|.... ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 226 VPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred CccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 11112222222221 256899999999999999888776431 35
Q ss_pred eEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEE----ec-----CCCChhhHHHHhhhcccCCCC
Q 013727 280 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YD-----IPTNSKDYIHRVGRTARAGRT 350 (437)
Q Consensus 280 ~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~----~~-----~p~s~~~~~Q~~GR~~R~g~~ 350 (437)
+..+|+++++.+|..+++.|++|.++|||||+++++|+|+|..++||+ || .|.+..+|+||+|||||.|.+
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 788999999999999999999999999999999999999999999997 65 588999999999999999965
Q ss_pred --ceEEEEEccc
Q 013727 351 --GVAISLVNQY 360 (437)
Q Consensus 351 --g~~i~~~~~~ 360 (437)
|.+++++...
T Consensus 386 ~~G~~ii~~~~~ 397 (737)
T PRK02362 386 PYGEAVLLAKSY 397 (737)
T ss_pred CCceEEEEecCc
Confidence 8899988664
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.4e-48 Score=386.18 Aligned_cols=325 Identities=21% Similarity=0.324 Sum_probs=258.1
Q ss_pred HHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 21 EACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 21 ~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
+.|++ +||..++++|.++++.++.|+++++.+|||+|||++|++|++. ....++|++|+++|+.|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~------------~~g~~lVisPl~sL~~dq~ 70 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL------------LKGLTVVISPLISLMKDQV 70 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH------------cCCcEEEEcCCHHHHHHHH
Confidence 34554 8999999999999999999999999999999999999999874 3445899999999999999
Q ss_pred HHHHHhhcCCCcEEEEEEcCCChHHHHHH----hCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc--cc
Q 013727 100 EQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN--DD 173 (437)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~--~~ 173 (437)
+.++.+ ++.+..+.++......... .....+|+++||++|........ +...++++||+||||++.+ .+
T Consensus 71 ~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~-l~~~~l~~iViDEaH~i~~~g~~ 145 (591)
T TIGR01389 71 DQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNM-LQRIPIALVAVDEAHCVSQWGHD 145 (591)
T ss_pred HHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHH-HhcCCCCEEEEeCCcccccccCc
Confidence 999876 4677778887765543322 23468999999999854322211 3456799999999999887 45
Q ss_pred cHHHHHHHH---HhCCccceEEEEeecCchHHHHHHHHhcC--CCcEEEcccccccccCceEEEEEccCCChHHHHHHHH
Q 013727 174 FEKSLDEIL---NVIPRMRQTYLFSATMTKKVKKLQRACLK--NPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248 (437)
Q Consensus 174 ~~~~~~~i~---~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 248 (437)
|++.+..+. ..++. .+++++|||++..+.......+. ++..+... ...+++ .+.......+...+...+
T Consensus 146 frp~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~nl--~~~v~~~~~~~~~l~~~l 219 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFITS---FDRPNL--RFSVVKKNNKQKFLLDYL 219 (591)
T ss_pred cHHHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC---CCCCCc--EEEEEeCCCHHHHHHHHH
Confidence 776655553 34444 44999999999887654444443 33332211 111222 233334445566677777
Q ss_pred HhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEe
Q 013727 249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 328 (437)
Q Consensus 249 ~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~ 328 (437)
....+.++||||++++.++.+++.|...|+++..+|++|+.++|..+++.|.+|+++|||||+++++|+|+|++++||++
T Consensus 220 ~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~ 299 (591)
T TIGR01389 220 KKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHY 299 (591)
T ss_pred HhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEc
Confidence 77677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHH
Q 013727 329 DIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (437)
Q Consensus 329 ~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l 368 (437)
++|.|.+.|+|++||+||.|..|.|++++++.|...+..+
T Consensus 300 ~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 300 DMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred CCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999999999999988776554433
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.4e-47 Score=393.06 Aligned_cols=359 Identities=23% Similarity=0.295 Sum_probs=258.6
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 013727 15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (437)
Q Consensus 15 l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L 94 (437)
|++.+.+.+++ +|..|+|+|.++++.+++|+++++++|||||||++|++|++..+...........+.++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 67777777765 78899999999999999999999999999999999999999988754322222356789999999999
Q ss_pred HHHHHHHHHH-------hh----cCC-CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCC-CCCCCccEE
Q 013727 95 AIQISEQFEA-------LG----SGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYL 161 (437)
Q Consensus 95 ~~q~~~~~~~-------~~----~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~-~~~~~~~~v 161 (437)
+.|+.+.+.. ++ ... ++.+...+|+.....+...+...++|+|+||++|..++..... -.+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876542 22 233 6788999999988777777777899999999999776654321 146889999
Q ss_pred EEcccccccccccHHHHH----HHHHhCCccceEEEEeecCchHHHHHHHHhcCC-------CcEEEcccccccccCceE
Q 013727 162 VLDEADRLLNDDFEKSLD----EILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-------PVKIEAASKYSTVDTLKQ 230 (437)
Q Consensus 162 ViDE~h~~~~~~~~~~~~----~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 230 (437)
|+||+|.+.+..++..+. .+....+...|.+++|||+++. ..+..+.... +..+.. .... .....
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~-~~~~--k~~~i 252 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVD-ARFV--KPFDI 252 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEc-cCCC--ccceE
Confidence 999999998766665444 3444444678999999999763 3444433221 111111 1110 11110
Q ss_pred EEE-------EccCCChHHHHHHHHHh--cCCCcEEEEecchHHHHHHHHHHHhc------CCceEeccCCCCHHHHHHH
Q 013727 231 QYR-------FVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNL------GQRAIPISGHMSQSKRLGA 295 (437)
Q Consensus 231 ~~~-------~~~~~~~~~~~~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~ 295 (437)
... ..........+...+.. ..+.++||||+|+..|+.++..|+.. +..+..+||++++++|..+
T Consensus 253 ~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 253 KVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred EEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 000 01111111122222222 14678999999999999999999873 4578999999999999999
Q ss_pred HHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCC-CCceEEEEEc-ccc-HHHHHHHHHHh
Q 013727 296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG-RTGVAISLVN-QYE-LEWYLQIEKLI 372 (437)
Q Consensus 296 ~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g-~~g~~i~~~~-~~~-~~~~~~l~~~~ 372 (437)
++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.+ ..+.+.++.. ..+ .+....++...
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~ 412 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAR 412 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999874 3334444433 233 22222334444
Q ss_pred CCCCCC
Q 013727 373 GKKLPE 378 (437)
Q Consensus 373 ~~~~~~ 378 (437)
...++.
T Consensus 413 ~~~ie~ 418 (876)
T PRK13767 413 EGKIDR 418 (876)
T ss_pred hCCCCC
Confidence 444544
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.4e-47 Score=384.10 Aligned_cols=332 Identities=22% Similarity=0.267 Sum_probs=260.3
Q ss_pred CccccCCCHHHHHHHHhCCCCCChHHHHHHHHh-hhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 013727 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPH-ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (437)
Q Consensus 9 ~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lv 87 (437)
+|+++++++.+.+.++++||..|+|+|.++++. +.+++++++++|||||||++|.+|++..+.. .+.++||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l~ 73 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAVY 73 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEEE
Confidence 789999999999999999999999999999986 7889999999999999999999999988764 4568999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccc
Q 013727 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (437)
Q Consensus 88 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h 167 (437)
++|+++|+.|+++.+..+. ..++++..++|+....... ...++|+|+||+++..++.... ..++++++||+||+|
T Consensus 74 l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~-~~l~~l~lvViDE~H 148 (720)
T PRK00254 74 LVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGS-SWIKDVKLVVADEIH 148 (720)
T ss_pred EeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCc-hhhhcCCEEEEcCcC
Confidence 9999999999999998864 4578999999987654322 2458999999999987776543 357899999999999
Q ss_pred cccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCce-----EEEEEccCCCh--
Q 013727 168 RLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLK-----QQYRFVPAKYK-- 240 (437)
Q Consensus 168 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-- 240 (437)
.+.+.+++..+..++..++...|++++|||+++. ..++.++..... . ....+ ..+. +.+........
T Consensus 149 ~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~wl~~~~~-~---~~~rp-v~l~~~~~~~~~~~~~~~~~~~ 222 (720)
T PRK00254 149 LIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAEWLNAELV-V---SDWRP-VKLRKGVFYQGFLFWEDGKIER 222 (720)
T ss_pred ccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHHhCCccc-c---CCCCC-CcceeeEecCCeeeccCcchhc
Confidence 9988889999999999988889999999999863 566664433211 1 11111 1111 11111111100
Q ss_pred -----HHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHh---------------------------------cCCceEe
Q 013727 241 -----DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRN---------------------------------LGQRAIP 282 (437)
Q Consensus 241 -----~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~---------------------------------~~~~~~~ 282 (437)
...+...+. .+.++||||+|++.++.++..|.. ....+..
T Consensus 223 ~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~ 300 (720)
T PRK00254 223 FPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAF 300 (720)
T ss_pred chHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEE
Confidence 112222232 467899999999999887766632 1235889
Q ss_pred ccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEE-------ecCC-CChhhHHHHhhhcccCC--CCce
Q 013727 283 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN-------YDIP-TNSKDYIHRVGRTARAG--RTGV 352 (437)
Q Consensus 283 ~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~-------~~~p-~s~~~~~Q~~GR~~R~g--~~g~ 352 (437)
+|++|++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.| .+..+|+||+||+||.| ..|.
T Consensus 301 hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~ 380 (720)
T PRK00254 301 HHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGE 380 (720)
T ss_pred eCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCce
Confidence 999999999999999999999999999999999999999999984 4443 35679999999999976 4689
Q ss_pred EEEEEcccc
Q 013727 353 AISLVNQYE 361 (437)
Q Consensus 353 ~i~~~~~~~ 361 (437)
+++++...+
T Consensus 381 ~ii~~~~~~ 389 (720)
T PRK00254 381 AIIVATTEE 389 (720)
T ss_pred EEEEecCcc
Confidence 999987654
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=9.2e-46 Score=375.46 Aligned_cols=320 Identities=20% Similarity=0.215 Sum_probs=249.1
Q ss_pred CCHHHHHHH-HhCCCCCChHHHHHHHHhhhcC------CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 013727 15 LRDELVEAC-ENVGWKTPSKIQAEAIPHALEG------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (437)
Q Consensus 15 l~~~~~~~l-~~~g~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lv 87 (437)
.+....+.+ ..+|| .||+.|.++++.+.++ ++.+++||||||||.+|+.+++..+. .+.+++|
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~---------~g~qvlv 505 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL---------DGKQVAV 505 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH---------hCCeEEE
Confidence 444555444 55899 5999999999999885 68999999999999999999988776 5578999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHH---HhCC-CCcEEEECchHHHHHHhcCCCCCCCCccEEEE
Q 013727 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL---ALGK-RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 88 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 163 (437)
++||++|+.|+++.++++....++++..++|+........ .+.. .++|||+||..+ . +.+.+.++++||+
T Consensus 506 LvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llVI 579 (926)
T TIGR00580 506 LVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLLII 579 (926)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEEEe
Confidence 9999999999999999988888899999988776544332 2223 589999999432 2 2356889999999
Q ss_pred cccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHH
Q 013727 164 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243 (437)
Q Consensus 164 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (437)
||+|++. ......+..++...|+++||||+.+....+......++..+....... ..+...+... . ....
T Consensus 580 DEahrfg-----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~--~-~~~i 649 (926)
T TIGR00580 580 DEEQRFG-----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR--LPVRTFVMEY--D-PELV 649 (926)
T ss_pred ecccccc-----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc--cceEEEEEec--C-HHHH
Confidence 9999852 233445566677889999999988766555555555665554332211 1222222211 1 1111
Q ss_pred HHHHHHh-cCCCcEEEEecchHHHHHHHHHHHhc--CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCC
Q 013727 244 LVYILTE-VSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP 320 (437)
Q Consensus 244 ~~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~ 320 (437)
...+... ..+++++|||++++.++.+++.|+.. +.++..+||+|++.+|..++.+|++|+.+|||||+++++|+|+|
T Consensus 650 ~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp 729 (926)
T TIGR00580 650 REAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIP 729 (926)
T ss_pred HHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccc
Confidence 1122222 25678999999999999999999985 67899999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCC-ChhhHHHHhhhcccCCCCceEEEEEccc
Q 013727 321 SVDMVINYDIPT-NSKDYIHRVGRTARAGRTGVAISLVNQY 360 (437)
Q Consensus 321 ~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~g~~i~~~~~~ 360 (437)
++++||+++.|. +..+|+||+||+||.|+.|.|++++.+.
T Consensus 730 ~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 730 NANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred cCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999864 6789999999999999999999998653
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.8e-45 Score=361.59 Aligned_cols=319 Identities=22% Similarity=0.224 Sum_probs=244.2
Q ss_pred HHHHh-CCCCCChHHHHHHHHhhhcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 013727 21 EACEN-VGWKTPSKIQAEAIPHALEGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (437)
Q Consensus 21 ~~l~~-~g~~~~~~~Q~~~~~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 98 (437)
+..++ .||. |+|||.++++.++.|+ ++++.+|||||||.++.++.+.. ... .....++++++|+|+|+.|+
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~-----~~~~~rLv~~vPtReLa~Qi 78 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG-----AKVPRRLVYVVNRRTVVDQV 78 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc-----ccccceEEEeCchHHHHHHH
Confidence 33443 6997 9999999999999998 68888999999999765444422 111 11233556678999999999
Q ss_pred HHHHHHhhcCC-----------------------CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCC--
Q 013727 99 SEQFEALGSGI-----------------------SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF-- 153 (437)
Q Consensus 99 ~~~~~~~~~~~-----------------------~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~-- 153 (437)
++.+.+++..+ ++++..++||.+...++..+..+++|||+|++.+ .+...+
T Consensus 79 ~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i----~sr~L~~g 154 (844)
T TIGR02621 79 TEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI----GSRLLFSG 154 (844)
T ss_pred HHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH----cCCccccc
Confidence 99999988644 4889999999999999999999999999996544 322210
Q ss_pred -------------CCCCccEEEEcccccccccccHHHHHHHHHhC--Ccc---ceEEEEeecCchHHHHHHHHhcCCCcE
Q 013727 154 -------------SLGTLKYLVLDEADRLLNDDFEKSLDEILNVI--PRM---RQTYLFSATMTKKVKKLQRACLKNPVK 215 (437)
Q Consensus 154 -------------~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~--~~~---~~~i~~SAT~~~~~~~~~~~~~~~~~~ 215 (437)
.+++++++|+|||| ++++|...+..|+..+ ++. +|+++||||++..+..+...++.++..
T Consensus 155 Yg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~ 232 (844)
T TIGR02621 155 YGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYK 232 (844)
T ss_pred cccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCce
Confidence 26789999999999 6789999999999964 332 699999999999888888777777766
Q ss_pred EEcccccccccCceEEEEEccCCChHHHHHHH---HHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHH
Q 013727 216 IEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI---LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKR 292 (437)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r 292 (437)
+...........+.+ +..++...+...+... +....++++||||||++.++.+++.|+..++ ..+||+|++.+|
T Consensus 233 i~V~~~~l~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR 309 (844)
T TIGR02621 233 HPVLKKRLAAKKIVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAER 309 (844)
T ss_pred eecccccccccceEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHH
Confidence 655444333334444 3333333332222221 1223567899999999999999999998876 899999999999
Q ss_pred H-----HHHHHhhC----CC-------ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCc-eEEE
Q 013727 293 L-----GALNKFKA----GE-------CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTG-VAIS 355 (437)
Q Consensus 293 ~-----~~~~~f~~----g~-------~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g-~~i~ 355 (437)
. .+++.|++ |. ..|||||+++++|+|++. ++||++..| .+.|+||+||+||.|..| ..++
T Consensus 310 ~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~ 386 (844)
T TIGR02621 310 DDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIA 386 (844)
T ss_pred hhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEE
Confidence 9 78999987 44 689999999999999976 888887766 689999999999999853 4355
Q ss_pred EEc
Q 013727 356 LVN 358 (437)
Q Consensus 356 ~~~ 358 (437)
++.
T Consensus 387 vv~ 389 (844)
T TIGR02621 387 VVH 389 (844)
T ss_pred EEe
Confidence 553
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.1e-45 Score=357.18 Aligned_cols=336 Identities=24% Similarity=0.340 Sum_probs=268.8
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 013727 15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (437)
Q Consensus 15 l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L 94 (437)
|++.+.+.++.. |.+||+.|..|++.+.+|+++|+.||||||||+++++|++..+.... ..+...+..+||++|.++|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHHH
Confidence 789999999888 99999999999999999999999999999999999999999998764 2222256889999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCC-CCCCCccEEEEcccccccccc
Q 013727 95 AIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLNDD 173 (437)
Q Consensus 95 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~-~~~~~~~~vViDE~h~~~~~~ 173 (437)
.+.+.+.++.++...|+.+...+|+++..+......+.+||+++||++|.-++...+. -.+.++.+||+||.|.+....
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999999999999999999999999998888899999999999999776655321 158899999999999998866
Q ss_pred cHHH----HHHHHHhCCccceEEEEeecCchHHHHHHHHhcCC--CcEEEcccccccccCceEEEEEcc-C-----CC--
Q 013727 174 FEKS----LDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN--PVKIEAASKYSTVDTLKQQYRFVP-A-----KY-- 239 (437)
Q Consensus 174 ~~~~----~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~-- 239 (437)
.+.+ ++.+....+ ..|.+++|||..+. ...+++.... +..+........ ......... . ..
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k~---~~i~v~~p~~~~~~~~~~~~ 240 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAKK---LEIKVISPVEDLIYDEELWA 240 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCCc---ceEEEEecCCccccccchhH
Confidence 5554 444444455 78999999999854 4555555444 333332222111 111111111 1 11
Q ss_pred -hHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcC-CceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCC
Q 013727 240 -KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG-QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGL 317 (437)
Q Consensus 240 -~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gi 317 (437)
....+..+++ ....+|||+||+..++.++..|++.+ ..+..+||.++.+.|..+.++|++|+.+++|||+.++-||
T Consensus 241 ~~~~~i~~~v~--~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGI 318 (814)
T COG1201 241 ALYERIAELVK--KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGI 318 (814)
T ss_pred HHHHHHHHHHh--hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcc
Confidence 1122223333 33489999999999999999999887 7899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCCCChhhHHHHhhhcccC-CCCceEEEEEcc
Q 013727 318 DIPSVDMVINYDIPTNSKDYIHRVGRTARA-GRTGVAISLVNQ 359 (437)
Q Consensus 318 d~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~-g~~g~~i~~~~~ 359 (437)
|+.+++.||+++.|.++..++||+||+|+. +....++.+...
T Consensus 319 DiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 319 DIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999965 444566665544
No 47
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-47 Score=315.89 Aligned_cols=331 Identities=32% Similarity=0.576 Sum_probs=290.3
Q ss_pred CccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 013727 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL 88 (437)
Q Consensus 9 ~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl 88 (437)
.|..+-|-|++.+++-..||+.|+++|.+++|...-|.+++++|..|-|||.+|.+..++.+..-. ....++++
T Consensus 43 gfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~------g~vsvlvm 116 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD------GQVSVLVM 116 (387)
T ss_pred chhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC------CeEEEEEE
Confidence 588888999999999999999999999999999999999999999999999999998888775432 45678999
Q ss_pred cCcHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccc
Q 013727 89 SPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (437)
Q Consensus 89 ~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h 167 (437)
|.||+||-|+..+..+|.... ++++..++||.........+.+-++|+|+||++++.+.++ +.++++++..+|+||||
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLDECD 195 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehhhHH
Confidence 999999999999998887765 6889999999998888888888899999999999887766 55799999999999999
Q ss_pred cccc-cccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccc-cccCceEEEEEccCCChHHHHH
Q 013727 168 RLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS-TVDTLKQQYRFVPAKYKDCYLV 245 (437)
Q Consensus 168 ~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 245 (437)
.|+. .+.+..+..|....|...|++.||||++.+++..+..++.+|..+.+..+.. ....+.+.|....+..+...+.
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~ 275 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLN 275 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 8887 5678889999999999999999999999999999999999998887776543 4567888888888888999999
Q ss_pred HHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEE
Q 013727 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV 325 (437)
Q Consensus 246 ~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~V 325 (437)
.++.......++||+.|... | + | ..+ +|||+.+++|+|+..++.|
T Consensus 276 dLLd~LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 276 DLLDVLEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhhhhhhhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcccceee
Confidence 99998899999999998766 0 0 2 123 8999999999999999999
Q ss_pred EEecCCCChhhHHHHhhhcccCCCCceEEEEEcc-ccHHHHHHHHHHhCCCCCCCCC
Q 013727 326 INYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQ-YELEWYLQIEKLIGKKLPEFPA 381 (437)
Q Consensus 326 i~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 381 (437)
+|||+|.+.++|+||.||+||.|.+|.++++++. .+...+..+.+.+...+.++|.
T Consensus 321 ~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpd 377 (387)
T KOG0329|consen 321 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPD 377 (387)
T ss_pred eccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCc
Confidence 9999999999999999999999999999999976 4555666677766666666654
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.3e-44 Score=374.82 Aligned_cols=326 Identities=20% Similarity=0.203 Sum_probs=256.0
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC------CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCC
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVP 81 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~ 81 (437)
..|.-.+.+.+..+...+++| .||+.|.++++.++.+ ++++++|+||+|||.+|+.+++..+. .
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------~ 648 (1147)
T PRK10689 579 EGFAFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------N 648 (1147)
T ss_pred cCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---------c
Confidence 344433445566777788999 6999999999999987 79999999999999999888776654 5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhC----CCCcEEEECchHHHHHHhcCCCCCCCC
Q 013727 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALG----KRPHIVVATPGRLMDHLTNTKGFSLGT 157 (437)
Q Consensus 82 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 157 (437)
+.+++|++||++|+.|+++.|+++....++++..++++.+...+...+. ..++|+|+||+.+ .. .+.+.+
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~--~v~~~~ 722 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS--DVKWKD 722 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC--CCCHhh
Confidence 6789999999999999999999877777888888888877665544332 3689999999744 22 246788
Q ss_pred ccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccC
Q 013727 158 LKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA 237 (437)
Q Consensus 158 ~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (437)
+++||+||+|++. +. ....+..++...|+++||||+.+....+....+.++..+....... ..+.........
T Consensus 723 L~lLVIDEahrfG---~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~ 795 (1147)
T PRK10689 723 LGLLIVDEEHRFG---VR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDS 795 (1147)
T ss_pred CCEEEEechhhcc---hh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCc
Confidence 9999999999862 22 2344566778899999999998887777777777887765443221 123222222211
Q ss_pred CChHHHHHHHHHh-cCCCcEEEEecchHHHHHHHHHHHhc--CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCC
Q 013727 238 KYKDCYLVYILTE-VSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVAS 314 (437)
Q Consensus 238 ~~~~~~~~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 314 (437)
......++.. ..+++++|||++++.++.+++.|... +..+..+||+|++.+|.+++.+|++|+.+|||||++++
T Consensus 796 ---~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIie 872 (1147)
T PRK10689 796 ---LVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 (1147)
T ss_pred ---HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhh
Confidence 1111122222 24678999999999999999999987 67899999999999999999999999999999999999
Q ss_pred CCCCCCCCCEEEEecCC-CChhhHHHHhhhcccCCCCceEEEEEcc
Q 013727 315 RGLDIPSVDMVINYDIP-TNSKDYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 315 ~Gid~~~~~~Vi~~~~p-~s~~~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
+|+|+|++++||..+.. .+...|+|++||+||.|+.|.|++++..
T Consensus 873 rGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999999999965543 4677899999999999999999998854
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=6.6e-45 Score=368.01 Aligned_cols=331 Identities=18% Similarity=0.237 Sum_probs=251.4
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lv 87 (437)
+.|++++|++.+.+.++..||. |+++|.++++.+.+++++++++|||||||+++.++++..+. .+.+++|
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~---------~~~k~v~ 70 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL---------AGLKSIY 70 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH---------hCCcEEE
Confidence 4689999999999999999996 99999999999999999999999999999999999988775 3457999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccc
Q 013727 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (437)
Q Consensus 88 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h 167 (437)
++|+++|+.|+++.+.++. ..++.+...+|+....... ...++|+|+||+++..++.... ..+.++++||+||+|
T Consensus 71 i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDEaH 145 (674)
T PRK01172 71 IVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPDF---IKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADEIH 145 (674)
T ss_pred EechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChhh---hccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEecch
Confidence 9999999999999998864 4578888888876543321 2457999999999987776644 357889999999999
Q ss_pred cccccccHHHHHHHHHh---CCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEE-----EEcc-CC
Q 013727 168 RLLNDDFEKSLDEILNV---IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-----RFVP-AK 238 (437)
Q Consensus 168 ~~~~~~~~~~~~~i~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~ 238 (437)
++.+.+++..++.++.. .++..|++++|||+++. ..+..++....... .... ..+.... .... ..
T Consensus 146 ~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl~~~~~~~----~~r~-vpl~~~i~~~~~~~~~~~~ 219 (674)
T PRK01172 146 IIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWLNASLIKS----NFRP-VPLKLGILYRKRLILDGYE 219 (674)
T ss_pred hccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHhCCCccCC----CCCC-CCeEEEEEecCeeeecccc
Confidence 99888888777776554 44677899999999764 55665443222110 0000 1111000 0011 11
Q ss_pred ChHHHHHHHHHh--cCCCcEEEEecchHHHHHHHHHHHhcC-------------------------CceEeccCCCCHHH
Q 013727 239 YKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLG-------------------------QRAIPISGHMSQSK 291 (437)
Q Consensus 239 ~~~~~~~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~-------------------------~~~~~~~~~~~~~~ 291 (437)
.....+..++.. ..++++||||++++.++.++..|.... ..+..+|+++++++
T Consensus 220 ~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~e 299 (674)
T PRK01172 220 RSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQ 299 (674)
T ss_pred cccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHH
Confidence 111112223332 356889999999999999998886531 24678999999999
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEec---------CCCChhhHHHHhhhcccCCC--CceEEEEEccc
Q 013727 292 RLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD---------IPTNSKDYIHRVGRTARAGR--TGVAISLVNQY 360 (437)
Q Consensus 292 r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~---------~p~s~~~~~Q~~GR~~R~g~--~g~~i~~~~~~ 360 (437)
|..+++.|++|.++|||||+++++|+|+|+..+|| .+ .|.+..+|.||+|||||.|. .|.+++++...
T Consensus 300 R~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 300 RRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999999999865444 44 25688899999999999985 46677776544
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.8e-44 Score=360.42 Aligned_cols=315 Identities=20% Similarity=0.246 Sum_probs=238.7
Q ss_pred HHHHHHhCCCCCChHHHHHHHHhhhcC------CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 013727 19 LVEACENVGWKTPSKIQAEAIPHALEG------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (437)
Q Consensus 19 ~~~~l~~~g~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~ 92 (437)
+...+..++| +||++|.++++.+.++ .+.+++||||||||++|++|++..+. .+.+++|++||+
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---------~g~q~lilaPT~ 320 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---------AGYQAALMAPTE 320 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---------cCCeEEEEeccH
Confidence 3445567899 6999999999999886 47999999999999999999998775 677899999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHH---HhCC-CCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccc
Q 013727 93 ELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL---ALGK-RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR 168 (437)
Q Consensus 93 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~ 168 (437)
+|+.|+++.++++....++++..++|+.+...... .+.. .++|+|+||+.+.+ .+.+.++++||+||+|+
T Consensus 321 ~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 321 ILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhh
Confidence 99999999999999888999999999988644332 3333 59999999987632 23577899999999998
Q ss_pred ccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHH
Q 013727 169 LLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248 (437)
Q Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 248 (437)
+... ....+......+++++||||+.+....+......+...+..... ....+... ..........+..+.
T Consensus 395 fg~~-----qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~--~r~~i~~~--~~~~~~~~~~~~~i~ 465 (681)
T PRK10917 395 FGVE-----QRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP--GRKPITTV--VIPDSRRDEVYERIR 465 (681)
T ss_pred hhHH-----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC--CCCCcEEE--EeCcccHHHHHHHHH
Confidence 6332 22223333456789999999876544333322222222221111 11122222 223333333222222
Q ss_pred Hh-cCCCcEEEEecch--------HHHHHHHHHHHhc--CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCC
Q 013727 249 TE-VSASSTMVFTRTC--------DATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGL 317 (437)
Q Consensus 249 ~~-~~~~~~iVf~~s~--------~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gi 317 (437)
.. ..+.+++|||+.+ ..+..+++.|... +.++..+||+|++.+|..++++|++|+.+|||||+++++|+
T Consensus 466 ~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~Gi 545 (681)
T PRK10917 466 EEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGV 545 (681)
T ss_pred HHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCc
Confidence 22 3567899999964 3456677777765 46899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCCC-ChhhHHHHhhhcccCCCCceEEEEEc
Q 013727 318 DIPSVDMVINYDIPT-NSKDYIHRVGRTARAGRTGVAISLVN 358 (437)
Q Consensus 318 d~~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~g~~i~~~~ 358 (437)
|+|++++||+++.|. +...|+|++||+||.|..|.|++++.
T Consensus 546 Dip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 546 DVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999999986 57889999999999999999999995
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=7.3e-44 Score=355.28 Aligned_cols=318 Identities=18% Similarity=0.249 Sum_probs=237.7
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHhhhcC------CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 013727 17 DELVEACENVGWKTPSKIQAEAIPHALEG------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (437)
Q Consensus 17 ~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P 90 (437)
..+.+.++.++| +||+.|.++++.+..+ .+.+++||||||||++|+++++..+. .+.+++|++|
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---------~g~qvlilaP 292 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---------AGYQVALMAP 292 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---------cCCcEEEECC
Confidence 344567788999 7999999999999875 25899999999999999999988775 5678999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHH---HHhC-CCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccc
Q 013727 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT---LALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (437)
Q Consensus 91 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~ 166 (437)
|++|+.|+++.+++++...++++..++|+....... ..+. ..++|+|+||+.+.+ .+.+.++++||+||+
T Consensus 293 T~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 293 TEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQ 366 (630)
T ss_pred HHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEech
Confidence 999999999999999888899999999998765432 2232 358999999987643 245788999999999
Q ss_pred ccccccccHHHHHHHHHhCC--ccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHH
Q 013727 167 DRLLNDDFEKSLDEILNVIP--RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244 (437)
Q Consensus 167 h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (437)
|++..... ..+..... ..+++++||||+.+....+......+...+..... ....+.. ..+....+...+
T Consensus 367 H~fg~~qr----~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~--~r~~i~~--~~~~~~~~~~~~ 438 (630)
T TIGR00643 367 HRFGVEQR----KKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPP--GRKPITT--VLIKHDEKDIVY 438 (630)
T ss_pred hhccHHHH----HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCC--CCCceEE--EEeCcchHHHHH
Confidence 98643221 22223322 25789999999876543332211111111111110 0112222 222333333333
Q ss_pred HHHHHh-cCCCcEEEEecch--------HHHHHHHHHHHhc--CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCC
Q 013727 245 VYILTE-VSASSTMVFTRTC--------DATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA 313 (437)
Q Consensus 245 ~~~l~~-~~~~~~iVf~~s~--------~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 313 (437)
..+... ..+.+++|||+.+ ..++.+++.|... +..+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 518 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVI 518 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcee
Confidence 333333 2567899999876 4566777777653 6789999999999999999999999999999999999
Q ss_pred CCCCCCCCCCEEEEecCCC-ChhhHHHHhhhcccCCCCceEEEEEc
Q 013727 314 SRGLDIPSVDMVINYDIPT-NSKDYIHRVGRTARAGRTGVAISLVN 358 (437)
Q Consensus 314 ~~Gid~~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~g~~i~~~~ 358 (437)
++|+|+|++++||+++.|. +...|.|++||+||.|..|.|++++.
T Consensus 519 e~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred ecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999986 67889999999999999999999983
No 52
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-44 Score=343.18 Aligned_cols=329 Identities=23% Similarity=0.316 Sum_probs=257.8
Q ss_pred HHHHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 013727 19 LVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 97 (437)
Q Consensus 19 ~~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q 97 (437)
+...|+. +||..+++-|.++|..+++++++++.+|||+||+++|.+|++- ....+|||.|..+|...
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll------------~~G~TLVVSPLiSLM~D 72 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALL------------LEGLTLVVSPLISLMKD 72 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHh------------cCCCEEEECchHHHHHH
Confidence 3355665 7999999999999999999999999999999999999999886 34469999999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccc-
Q 013727 98 ISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND- 172 (437)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~- 172 (437)
+.+.++..+ +....+.+..+..+....+ ....++++-+|++|..-..... +.-..+.++||||||++.++
T Consensus 73 QV~~l~~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~-L~~~~i~l~vIDEAHCiSqWG 147 (590)
T COG0514 73 QVDQLEAAG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLEL-LKRLPISLVAIDEAHCISQWG 147 (590)
T ss_pred HHHHHHHcC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHH-HHhCCCceEEechHHHHhhcC
Confidence 999998864 7777777776554433322 2347999999999854322111 23456889999999999986
Q ss_pred -ccHHHHHHHHHh---CCccceEEEEeecCchHHHHHHHHhc--CCCcEEEcccccccccCceEEEEEccCCChHHHHHH
Q 013727 173 -DFEKSLDEILNV---IPRMRQTYLFSATMTKKVKKLQRACL--KNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246 (437)
Q Consensus 173 -~~~~~~~~i~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (437)
+|++.+..+-.. ++ ..+++++|||.++.+..-....+ ..+..+...-+. +++. |..++......-+..
T Consensus 148 hdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR---pNi~--~~v~~~~~~~~q~~f 221 (590)
T COG0514 148 HDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR---PNLA--LKVVEKGEPSDQLAF 221 (590)
T ss_pred CccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC---chhh--hhhhhcccHHHHHHH
Confidence 588887766544 44 56799999999988876554444 333333322221 2222 212221111111222
Q ss_pred HH--HhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCE
Q 013727 247 IL--TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 324 (437)
Q Consensus 247 ~l--~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~ 324 (437)
+. .....++.||||.|++.++.++++|...|+.+..+|++|+.++|..+.++|..++.+|+|||.++++|||-|++++
T Consensus 222 i~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 222 LATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred HHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceE
Confidence 22 2456677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHH
Q 013727 325 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEK 370 (437)
Q Consensus 325 Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~ 370 (437)
||||++|.|.+.|+|-+|||||.|....|++++.+.|..+...+.+
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~ 347 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIE 347 (590)
T ss_pred EEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999776555443
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.2e-42 Score=361.84 Aligned_cols=329 Identities=21% Similarity=0.235 Sum_probs=238.6
Q ss_pred EEcCCCchHHHHHHHHHHHHHHHHhhhc----CCCCCeEEEEEcCcHHHHHHHHHHHHHhh------------cCCCcEE
Q 013727 50 GLAQTGSGKTGAFALPILQALLEIAENQ----RTVPAFFACVLSPTRELAIQISEQFEALG------------SGISLRC 113 (437)
Q Consensus 50 v~~~tGsGKT~~~~~~~~~~l~~~~~~~----~~~~~~~~lvl~P~~~L~~q~~~~~~~~~------------~~~~~~~ 113 (437)
|++|||||||++|++|++..+....... ....+.++|||+|+++|+.|+.+.++... ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999988643111 11245789999999999999999886421 1247899
Q ss_pred EEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccH----HHHHHHHHhCCccc
Q 013727 114 AVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE----KSLDEILNVIPRMR 189 (437)
Q Consensus 114 ~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~----~~~~~i~~~~~~~~ 189 (437)
...+|+.+...+...+.+.++|+|+||++|..++.+.....++++++|||||+|.+.+..++ ..+..+...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999888777777789999999999988776533336899999999999999875444 44566666667778
Q ss_pred eEEEEeecCchHHHHHHHHhcCC-CcEEEcccccccccCceEEEEEccCCC---------------------hHHHHHHH
Q 013727 190 QTYLFSATMTKKVKKLQRACLKN-PVKIEAASKYSTVDTLKQQYRFVPAKY---------------------KDCYLVYI 247 (437)
Q Consensus 190 ~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~ 247 (437)
|+|++|||+++. +.++.++... +..+.... ......+. .+....... .......+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~~~-~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVNPP-AMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEECCC-CCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999874 5666655433 44443221 11111121 111111100 00111123
Q ss_pred HHh-cCCCcEEEEecchHHHHHHHHHHHhcC---------------------------------CceEeccCCCCHHHHH
Q 013727 248 LTE-VSASSTMVFTRTCDATRLLALMLRNLG---------------------------------QRAIPISGHMSQSKRL 293 (437)
Q Consensus 248 l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~~r~ 293 (437)
+.. ..+.++||||||+..|+.++..|++.. ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 322 246789999999999999999987642 1256799999999999
Q ss_pred HHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHH----HHHHH
Q 013727 294 GALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEW----YLQIE 369 (437)
Q Consensus 294 ~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~----~~~l~ 369 (437)
.+++.|++|+.++||||+.++.|||++++++||+++.|.|..+|+||+||+||. ..|.+..++.+.+... ...++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~dlle~~~~ve 396 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRRDLVDSAVIVE 396 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 3344333333333332 22366
Q ss_pred HHhCCCCCCCCCC
Q 013727 370 KLIGKKLPEFPAE 382 (437)
Q Consensus 370 ~~~~~~~~~~~~~ 382 (437)
.++...++....+
T Consensus 397 ~~l~g~iE~~~~p 409 (1490)
T PRK09751 397 CMFAGRLENLTPP 409 (1490)
T ss_pred HHhcCCCCccCCC
Confidence 7777777765443
No 54
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.2e-42 Score=357.71 Aligned_cols=288 Identities=21% Similarity=0.291 Sum_probs=226.6
Q ss_pred HHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 21 EACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 21 ~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
+.+++ .|+ .|+++|..+++.++.|++++++||||||||. |.+++...+.. .+.+++|++||++|+.|++
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa~Qi~ 140 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLVEQVV 140 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHHHHHH
Confidence 34434 588 7999999999999999999999999999996 55555544432 4678999999999999999
Q ss_pred HHHHHhhcCCCcEEEEEEcCCCh-----HHHHHHhC-CCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc--
Q 013727 100 EQFEALGSGISLRCAVLVGGVDM-----MQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-- 171 (437)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~-- 171 (437)
+.++.++...++.+..+.|+... ......+. ..++|+|+||++|.+++.. +....+++||+||||++++
T Consensus 141 ~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVvDEaD~~L~~~ 217 (1176)
T PRK09401 141 EKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFVDDVDAVLKSS 217 (1176)
T ss_pred HHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEEEChHHhhhcc
Confidence 99999998888888777776542 22223333 4589999999999988762 4566799999999999986
Q ss_pred ---------cccH-HHHHHHHHhCCc------------------------cceEEEEeecCchH-HHHHHHHhcCCCcEE
Q 013727 172 ---------DDFE-KSLDEILNVIPR------------------------MRQTYLFSATMTKK-VKKLQRACLKNPVKI 216 (437)
Q Consensus 172 ---------~~~~-~~~~~i~~~~~~------------------------~~~~i~~SAT~~~~-~~~~~~~~~~~~~~~ 216 (437)
.+|. ..+..++..++. ..|++++|||+++. +.. ..+.++..+
T Consensus 218 k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~ 294 (1176)
T PRK09401 218 KNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGF 294 (1176)
T ss_pred cchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceE
Confidence 5674 567777776654 67999999999864 332 233444445
Q ss_pred EcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHH---HHHHHHHHHhcCCceEeccCCCCHHHHH
Q 013727 217 EAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDA---TRLLALMLRNLGQRAIPISGHMSQSKRL 293 (437)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~ 293 (437)
.+........++.+.|...+ .+...+..++.... .++||||++... ++.+++.|+..|+++..+||++ .
T Consensus 295 ~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~ 366 (1176)
T PRK09401 295 EVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----E 366 (1176)
T ss_pred EecCcccccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----H
Confidence 55554445567777776655 45566677776554 589999999777 9999999999999999999999 2
Q ss_pred HHHHHhhCCCceEEEE----cCCCCCCCCCCC-CCEEEEecCCC
Q 013727 294 GALNKFKAGECNILIC----TDVASRGLDIPS-VDMVINYDIPT 332 (437)
Q Consensus 294 ~~~~~f~~g~~~ilv~----T~~~~~Gid~~~-~~~Vi~~~~p~ 332 (437)
+.+++|++|+++|||| |+++++|+|+|+ +++|||||.|.
T Consensus 367 ~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 367 RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 3469999999999999 689999999999 89999999996
No 55
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-40 Score=300.52 Aligned_cols=325 Identities=25% Similarity=0.280 Sum_probs=243.9
Q ss_pred CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 27 GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 27 g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
+..++|.||.......+.+ +.|++.|||-|||+++++-+..++... +..+|+++||+.|+.|+++.+.++.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~--------~~kvlfLAPTKPLV~Qh~~~~~~v~ 82 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF--------GGKVLFLAPTKPLVLQHAEFCRKVT 82 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc--------CCeEEEecCCchHHHHHHHHHHHHh
Confidence 3457999999999988875 999999999999999888777777653 3389999999999999999999988
Q ss_pred cCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCC
Q 013727 107 SGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186 (437)
Q Consensus 107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~ 186 (437)
.-..-.+..++|..+..+....+ ...+|+|+||+.+.+.+..+. +++.++.++||||||+.....-+-.+........
T Consensus 83 ~ip~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Gr-id~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 83 GIPEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGR-IDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred CCChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCc-cChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 66666788999998887665544 458999999999988887754 6999999999999999888666666666555556
Q ss_pred ccceEEEEeecCchHHHHHHHHhcC---CCcEEEccccc-----------------------------------------
Q 013727 187 RMRQTYLFSATMTKKVKKLQRACLK---NPVKIEAASKY----------------------------------------- 222 (437)
Q Consensus 187 ~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~----------------------------------------- 222 (437)
.++.++++|||+..+.+.+....-+ +.+.+....+.
T Consensus 161 k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~ 240 (542)
T COG1111 161 KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLK 240 (542)
T ss_pred cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778999999976654433322210 00000000000
Q ss_pred ------ccc----c---Cce-EEE--------------------------------------------------------
Q 013727 223 ------STV----D---TLK-QQY-------------------------------------------------------- 232 (437)
Q Consensus 223 ------~~~----~---~~~-~~~-------------------------------------------------------- 232 (437)
... . ... ...
T Consensus 241 ~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~ 320 (542)
T COG1111 241 ELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKA 320 (542)
T ss_pred HcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHH
Confidence 000 0 000 000
Q ss_pred ---------------------EEccCCChHHHHHHH----HHhcCCCcEEEEecchHHHHHHHHHHHhcCCceE--ec--
Q 013727 233 ---------------------RFVPAKYKDCYLVYI----LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI--PI-- 283 (437)
Q Consensus 233 ---------------------~~~~~~~~~~~~~~~----l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~--~~-- 283 (437)
.......|...+..+ ++...+.++|||++.+++|+.+.++|...+..+. .+
T Consensus 321 a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQ 400 (542)
T COG1111 321 AKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQ 400 (542)
T ss_pred HHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeec
Confidence 000001111222222 2334567899999999999999999999988774 22
Q ss_pred -----cCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEc
Q 013727 284 -----SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVN 358 (437)
Q Consensus 284 -----~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~ 358 (437)
..||++.++.++++.|++|+++|||||+++++|+|+|.++.||.|++..|+..++||.||+||. +.|.+++++.
T Consensus 401 a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt 479 (542)
T COG1111 401 ASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVT 479 (542)
T ss_pred cccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEe
Confidence 2579999999999999999999999999999999999999999999999999999999999996 7899998887
Q ss_pred cccHH
Q 013727 359 QYELE 363 (437)
Q Consensus 359 ~~~~~ 363 (437)
....+
T Consensus 480 ~gtrd 484 (542)
T COG1111 480 EGTRD 484 (542)
T ss_pred cCchH
Confidence 76433
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.1e-40 Score=327.59 Aligned_cols=318 Identities=16% Similarity=0.129 Sum_probs=232.1
Q ss_pred hHHHHHHHHhhhcCCcEEEEcCCCchHHHH---------HHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 013727 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGA---------FALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (437)
Q Consensus 32 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~---------~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 102 (437)
..+|.++++.++++++++++|+||||||.+ |++|.+..+..-. ......++++++||++|+.|+...+
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~---~~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID---PNFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc---cccCCcEEEEECcHHHHHHHHHHHH
Confidence 568999999999999999999999999987 3333444332110 1114568999999999999999998
Q ss_pred HHhhcC---CCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHH
Q 013727 103 EALGSG---ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179 (437)
Q Consensus 103 ~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~ 179 (437)
.+.... .+..+...+|+... ..........+|+++|++... ..+.++++||+||||.+...+ +.+.
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l--------~~L~~v~~VVIDEaHEr~~~~--DllL 311 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL--------NKLFDYGTVIIDEVHEHDQIG--DIII 311 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc--------cccccCCEEEccccccCccch--hHHH
Confidence 775433 35677888998763 211222236789999975211 247789999999999886644 3444
Q ss_pred HHHHhC-CccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCC---------ChHHHHHHHHH
Q 013727 180 EILNVI-PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK---------YKDCYLVYILT 249 (437)
Q Consensus 180 ~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~ 249 (437)
.++... +..+|+++||||++.+++.+. .++.++..+..... ....+.+.|...... .....+...+.
T Consensus 312 ~llk~~~~~~rq~ILmSATl~~dv~~l~-~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 312 AVARKHIDKIRSLFLMTATLEDDRDRIK-EFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHHHhhhhcCEEEEEccCCcHhHHHHH-HHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 454433 344689999999998888774 57777777766432 223444444332210 11111222332
Q ss_pred h---cCCCcEEEEecchHHHHHHHHHHHhc--CCceEeccCCCCHHHHHHHHHHh-hCCCceEEEEcCCCCCCCCCCCCC
Q 013727 250 E---VSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKF-KAGECNILICTDVASRGLDIPSVD 323 (437)
Q Consensus 250 ~---~~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~ilv~T~~~~~Gid~~~~~ 323 (437)
. ..++.+|||++++++++.+++.|+.. +..+..+||++++. ++.+++| ++|+.+|||||+++++|+|+|+++
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 2 23568999999999999999999987 68999999999975 4667777 689999999999999999999999
Q ss_pred EEEEec---CCC---------ChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHH
Q 013727 324 MVINYD---IPT---------NSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIE 369 (437)
Q Consensus 324 ~Vi~~~---~p~---------s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~ 369 (437)
+||++| .|. |.++|.||.||+||. ..|.|+.+++..+...+.++.
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 999998 554 788999999999999 789999999877654444433
No 57
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.2e-40 Score=324.36 Aligned_cols=299 Identities=15% Similarity=0.176 Sum_probs=217.2
Q ss_pred CCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcC
Q 013727 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (437)
Q Consensus 29 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 108 (437)
..|+++|.++++.++.+++.++++|||+|||+++...+ ..+... ...++||++||++|+.||.+.+++++..
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~-------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN-------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc-------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 47999999999999999999999999999999765422 222221 3347999999999999999999998754
Q ss_pred CCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCcc
Q 013727 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188 (437)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~ 188 (437)
....+..+.+|.... ...+|+|+||+++.+.... .+.++++||+||||++.... +..++..+++.
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~----~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~ 249 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKE----WFDQFGMVIVDECHLFTGKS----LTSIITKLDNC 249 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchhh----hccccCEEEEEchhcccchh----HHHHHHhhhcc
Confidence 344555566664331 3478999999998764321 36789999999999987643 45666667667
Q ss_pred ceEEEEeecCchHHHHHH--HHhcCCCcEEEcccc-------------------cccc--cCc-eEEE-----EEccCCC
Q 013727 189 RQTYLFSATMTKKVKKLQ--RACLKNPVKIEAASK-------------------YSTV--DTL-KQQY-----RFVPAKY 239 (437)
Q Consensus 189 ~~~i~~SAT~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~--~~~-~~~~-----~~~~~~~ 239 (437)
++++++|||+........ ...++ |........ .... ... ...+ .......
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTK 328 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHH
Confidence 889999999975322111 11111 111111000 0000 000 0000 0011112
Q ss_pred hHHHHHHHHHh--cCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEc-CCCCCC
Q 013727 240 KDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICT-DVASRG 316 (437)
Q Consensus 240 ~~~~~~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T-~~~~~G 316 (437)
+...+..++.. ..+.+++|||.+.++++.+++.|+..+.++..+||+++.++|..+++.|++|+..||||| +++++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 22333333322 246789999999999999999999999999999999999999999999999999999998 899999
Q ss_pred CCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCc
Q 013727 317 LDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTG 351 (437)
Q Consensus 317 id~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g 351 (437)
+|+|++++||+++++.|...|+||+||++|.+..+
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 99999999999999999999999999999987544
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.8e-40 Score=350.12 Aligned_cols=323 Identities=20% Similarity=0.209 Sum_probs=248.7
Q ss_pred HHHHHHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 013727 17 DELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELA 95 (437)
Q Consensus 17 ~~~~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 95 (437)
.++.+.+++ +|| .|+++|..+++.+++|++++++||||||||++++++++.... .+.+++|++||++|+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---------~g~~aLVl~PTreLa 135 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---------KGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---------cCCeEEEEECHHHHH
Confidence 345566766 899 699999999999999999999999999999966655443322 456899999999999
Q ss_pred HHHHHHHHHhhcCC--CcEEEEEEcCCChHHHHH---HhCC-CCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccc
Q 013727 96 IQISEQFEALGSGI--SLRCAVLVGGVDMMQQTL---ALGK-RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL 169 (437)
Q Consensus 96 ~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~---~~~~-~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~ 169 (437)
.|+.+.++.++... ++.+..++|+.+...+.. .+.. .++|+|+||++|.+.+... ...+++++|+||||+|
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---~~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---KHLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH---hhCCCCEEEEECceec
Confidence 99999999988764 466777888887665432 3333 5899999999998766542 1267999999999999
Q ss_pred cc-----------cccHHHHHH----HHH----------------------hCCccce-EEEEeecCchHHHHHHHHhcC
Q 013727 170 LN-----------DDFEKSLDE----ILN----------------------VIPRMRQ-TYLFSATMTKKVKKLQRACLK 211 (437)
Q Consensus 170 ~~-----------~~~~~~~~~----i~~----------------------~~~~~~~-~i~~SAT~~~~~~~~~~~~~~ 211 (437)
++ .+|.+.+.. ++. .++..+| .+++|||+++.... . ..+.
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~-~-~l~~ 290 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDR-V-KLYR 290 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHH-H-HHhh
Confidence 76 477777653 321 2344455 56799999864221 2 2346
Q ss_pred CCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHH---HHHHHHHHHhcCCceEeccCCCC
Q 013727 212 NPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDA---TRLLALMLRNLGQRAIPISGHMS 288 (437)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~---~~~l~~~l~~~~~~~~~~~~~~~ 288 (437)
++..+..........++.+.|.......+ ..+..++... +..+||||++++. |+.+++.|...|+++..+|++
T Consensus 291 ~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 291 ELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred cCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 66667776666666677777776554433 4566666655 5789999999875 589999999999999999985
Q ss_pred HHHHHHHHHHhhCCCceEEEEc----CCCCCCCCCCC-CCEEEEecCCC---ChhhHHHHh-------------hhcccC
Q 013727 289 QSKRLGALNKFKAGECNILICT----DVASRGLDIPS-VDMVINYDIPT---NSKDYIHRV-------------GRTARA 347 (437)
Q Consensus 289 ~~~r~~~~~~f~~g~~~ilv~T----~~~~~Gid~~~-~~~Vi~~~~p~---s~~~~~Q~~-------------GR~~R~ 347 (437)
|..++++|++|+++||||| +++++|||+|+ +++|||||.|. +.+.|.|.. ||++|.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 8899999999999999999 58999999999 99999999998 888776665 999999
Q ss_pred CCCceEEEEEcccc
Q 013727 348 GRTGVAISLVNQYE 361 (437)
Q Consensus 348 g~~g~~i~~~~~~~ 361 (437)
|..+.++..+...+
T Consensus 444 g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 444 GIPIEGVLDVFPED 457 (1638)
T ss_pred CCcchhHHHhHHHH
Confidence 87766654443333
No 59
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.4e-39 Score=327.31 Aligned_cols=305 Identities=19% Similarity=0.245 Sum_probs=234.2
Q ss_pred HHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-HhhcCCCc
Q 013727 33 KIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE-ALGSGISL 111 (437)
Q Consensus 33 ~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~-~~~~~~~~ 111 (437)
.+-.+++..+.++++++++|+||||||+++.++++.... ...+++|+.|+|++|.|+++.+. .++...+.
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 344566777778899999999999999999999887652 34579999999999999999885 45555566
Q ss_pred EEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccc-cccccccHHH-HHHHHHhCCccc
Q 013727 112 RCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD-RLLNDDFEKS-LDEILNVIPRMR 189 (437)
Q Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h-~~~~~~~~~~-~~~i~~~~~~~~ 189 (437)
.+.....+.. ......+|+|+||+.|++.+.... .++++++|||||+| ++++.++... +..+...++...
T Consensus 76 ~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d~--~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dl 147 (819)
T TIGR01970 76 TVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDDP--ELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDL 147 (819)
T ss_pred EEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhCc--ccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCc
Confidence 6665555432 233457899999999999887643 68999999999999 5777666543 455666677888
Q ss_pred eEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChH-----HHHHHHHHhcCCCcEEEEecchH
Q 013727 190 QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD-----CYLVYILTEVSASSTMVFTRTCD 264 (437)
Q Consensus 190 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~iVf~~s~~ 264 (437)
|+++||||++... + ..++.++..+...... ..+.+.|.......+. ..+..++.. ..+.+|||+++.+
T Consensus 148 qlIlmSATl~~~~--l-~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ 220 (819)
T TIGR01970 148 KILAMSATLDGER--L-SSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQA 220 (819)
T ss_pred eEEEEeCCCCHHH--H-HHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHH
Confidence 9999999998753 3 3455544444433221 1234444444332221 122333332 4578999999999
Q ss_pred HHHHHHHHHHh---cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC---------
Q 013727 265 ATRLLALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT--------- 332 (437)
Q Consensus 265 ~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~--------- 332 (437)
+++.+++.|+. .++.+..+||++++++|.++++.|++|..+|||||+++++|+|+|++++||+++.|.
T Consensus 221 eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g 300 (819)
T TIGR01970 221 EIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTG 300 (819)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccC
Confidence 99999999987 368899999999999999999999999999999999999999999999999999874
Q ss_pred ---------ChhhHHHHhhhcccCCCCceEEEEEccccH
Q 013727 333 ---------NSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (437)
Q Consensus 333 ---------s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 362 (437)
|..+|.||.||+||. ..|.|+.+++..+.
T Consensus 301 ~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 301 ITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred CceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 334689999999998 79999999986653
No 60
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.3e-39 Score=311.23 Aligned_cols=321 Identities=21% Similarity=0.203 Sum_probs=247.9
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|+ .|+++|..+++.++.|+ ++.+.||+|||++|.+|++.... .+..++|++||++||.|.++.+..
T Consensus 99 ~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al---------~G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 99 VLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL---------AGLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred HhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh---------cCCeEEEEcCcHHHHHHHHHHHHH
Confidence 4688 69999999999999998 99999999999999999998765 567899999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCCC------------------------CCCCCcc
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKG------------------------FSLGTLK 159 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~~------------------------~~~~~~~ 159 (437)
+...+++++.+++|+.+.. ......+++|+|+|...| .++|..+-. .-...+.
T Consensus 167 l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~ 244 (656)
T PRK12898 167 LYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLH 244 (656)
T ss_pred HHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccc
Confidence 9999999999999997653 334445789999999877 445443211 1235678
Q ss_pred EEEEccccccccc------------------ccHH--------------------------------HHHHHHHh-----
Q 013727 160 YLVLDEADRLLND------------------DFEK--------------------------------SLDEILNV----- 184 (437)
Q Consensus 160 ~vViDE~h~~~~~------------------~~~~--------------------------------~~~~i~~~----- 184 (437)
+.||||+|.++=+ .+.. .++.++..
T Consensus 245 ~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~ 324 (656)
T PRK12898 245 FAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAW 324 (656)
T ss_pred eeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhc
Confidence 9999999943110 0000 00000000
Q ss_pred -------------C------C-----------------------------------------------------------
Q 013727 185 -------------I------P----------------------------------------------------------- 186 (437)
Q Consensus 185 -------------~------~----------------------------------------------------------- 186 (437)
+ .
T Consensus 325 ~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~ 404 (656)
T PRK12898 325 RGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRF 404 (656)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHH
Confidence 0 0
Q ss_pred --ccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHhc--CCCcEEEEecc
Q 013727 187 --RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRT 262 (437)
Q Consensus 187 --~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~iVf~~s 262 (437)
....+.+||||.......+...+..++..+....... ....+.+..++...+...+...+... .+.++||||+|
T Consensus 405 Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~--r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t 482 (656)
T PRK12898 405 FRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQ--RRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRS 482 (656)
T ss_pred HHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCcc--ceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 0013568999999888888888888877665544332 22334455666666777777777654 36789999999
Q ss_pred hHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCC---CCC-----EEEEecCCCCh
Q 013727 263 CDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP---SVD-----MVINYDIPTNS 334 (437)
Q Consensus 263 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~---~~~-----~Vi~~~~p~s~ 334 (437)
++.++.++..|...|+++..+||+++. |+..+..|..+...|+|||+++++|+|++ ++. +||+++.|.|.
T Consensus 483 ~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~ 560 (656)
T PRK12898 483 VAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA 560 (656)
T ss_pred HHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH
Confidence 999999999999999999999998654 44555556666668999999999999999 665 99999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEEccccHH
Q 013727 335 KDYIHRVGRTARAGRTGVAISLVNQYELE 363 (437)
Q Consensus 335 ~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~ 363 (437)
..|.||+||+||.|..|.++++++..|.-
T Consensus 561 r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 561 RIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred HHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 99999999999999999999999876643
No 61
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.1e-38 Score=332.00 Aligned_cols=289 Identities=21% Similarity=0.310 Sum_probs=218.9
Q ss_pred HHHHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 013727 19 LVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 97 (437)
Q Consensus 19 ~~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q 97 (437)
+.+.+.+ .|+ .|+++|+.+++.++.|++++++||||||||. |.+|+...+.. .+.+++|++||++|+.|
T Consensus 67 f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 67 FEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHHHH
Confidence 3344444 455 7999999999999999999999999999997 66666655532 46789999999999999
Q ss_pred HHHHHHHhhcCCCcEEE---EEEcCCChHHHHH---HhC-CCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccc
Q 013727 98 ISEQFEALGSGISLRCA---VLVGGVDMMQQTL---ALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (437)
Q Consensus 98 ~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~---~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~ 170 (437)
+.+.++.++...++.+. .++|+.+...+.. .+. .+++|+|+||++|.+++... .. +++++|+||||+|+
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---~~-~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---GP-KFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh---cC-CCCEEEEeChHhhh
Confidence 99999999876665543 4678877654322 233 35899999999998877652 22 79999999999998
Q ss_pred c-----------cccHHH-HHHHH----------------------HhCCccce--EEEEeec-CchHHHHHHHHhcCCC
Q 013727 171 N-----------DDFEKS-LDEIL----------------------NVIPRMRQ--TYLFSAT-MTKKVKKLQRACLKNP 213 (437)
Q Consensus 171 ~-----------~~~~~~-~~~i~----------------------~~~~~~~~--~i~~SAT-~~~~~~~~~~~~~~~~ 213 (437)
+ .+|.+. +..++ ..++..+| ++++||| .+..+.. .++.++
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~l 289 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFREL 289 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccc
Confidence 8 466553 44432 23344444 5678999 4544332 234455
Q ss_pred cEEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecch---HHHHHHHHHHHhcCCceEeccCCCCHH
Q 013727 214 VKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTC---DATRLLALMLRNLGQRAIPISGHMSQS 290 (437)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~---~~~~~l~~~l~~~~~~~~~~~~~~~~~ 290 (437)
..+.+........++.+.+..... +...+..++... +.++||||++. +.|+.+++.|+..|+++..+||++++
T Consensus 290 l~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 290 LGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred cceEecCccccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 555555555555667776654433 234456666554 46799999999 99999999999999999999999973
Q ss_pred HHHHHHHHhhCCCceEEEE----cCCCCCCCCCCC-CCEEEEecCC
Q 013727 291 KRLGALNKFKAGECNILIC----TDVASRGLDIPS-VDMVINYDIP 331 (437)
Q Consensus 291 ~r~~~~~~f~~g~~~ilv~----T~~~~~Gid~~~-~~~Vi~~~~p 331 (437)
.+++.|++|+++|||| |+++++|+|+|+ +++||+||.|
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 6899999999999999 489999999999 8999999887
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.3e-39 Score=324.55 Aligned_cols=305 Identities=19% Similarity=0.260 Sum_probs=233.0
Q ss_pred HHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-HhhcCCCc
Q 013727 33 KIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE-ALGSGISL 111 (437)
Q Consensus 33 ~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~-~~~~~~~~ 111 (437)
.+-.+++..+.++++++++|+||||||++|.++++.... ...+++|+.|+|++|.|+++.+. .++...+.
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~ 78 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGE 78 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccCc
Confidence 344567777778899999999999999999988886432 23479999999999999999885 45555667
Q ss_pred EEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccc-ccccccH-HHHHHHHHhCCccc
Q 013727 112 RCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR-LLNDDFE-KSLDEILNVIPRMR 189 (437)
Q Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~-~~~~~~~-~~~~~i~~~~~~~~ 189 (437)
.+...+++... .....+|+|+||++|.+++..+. .++++++||+||+|. .++.++. ..+..++..+++..
T Consensus 79 ~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d~--~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 79 TVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRDP--ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDL 150 (812)
T ss_pred eEEEEecCccc------cCCCCcEEEEChhHHHHHHhhCC--CcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccc
Confidence 77776665432 22346899999999999887643 689999999999996 4554432 33455666677888
Q ss_pred eEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHH-----HHHHHHHhcCCCcEEEEecchH
Q 013727 190 QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC-----YLVYILTEVSASSTMVFTRTCD 264 (437)
Q Consensus 190 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~iVf~~s~~ 264 (437)
|+++||||++.. .+. .++.++..+...... ..+.+.|...+...+.. .+..++. ...+.+|||+++..
T Consensus 151 qlilmSATl~~~--~l~-~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~ 223 (812)
T PRK11664 151 KLLIMSATLDND--RLQ-QLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGVG 223 (812)
T ss_pred eEEEEecCCCHH--HHH-HhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCHH
Confidence 999999999865 333 345444444433221 23445554444333221 2223332 24688999999999
Q ss_pred HHHHHHHHHHh---cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC---------
Q 013727 265 ATRLLALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT--------- 332 (437)
Q Consensus 265 ~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~--------- 332 (437)
+++.+++.|+. .++.+..+||+++..+|..++..|++|+.+|||||+++++|+|+|++++||+++.+.
T Consensus 224 ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g 303 (812)
T PRK11664 224 EIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTG 303 (812)
T ss_pred HHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCC
Confidence 99999999987 567889999999999999999999999999999999999999999999999988764
Q ss_pred ---------ChhhHHHHhhhcccCCCCceEEEEEccccH
Q 013727 333 ---------NSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (437)
Q Consensus 333 ---------s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 362 (437)
|.++|.||.||+||. ..|.|+.+++..+.
T Consensus 304 ~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 304 LTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred cceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 345899999999998 69999999986543
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.3e-39 Score=296.05 Aligned_cols=337 Identities=22% Similarity=0.242 Sum_probs=269.6
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhh-hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEE
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHA-LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~-~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~l 86 (437)
...++|++|+++.+.|+..|+..+.|+|..++.+- +.|.|.+|.++|+||||++.-++-+..++. .+.+.|
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~Kml 265 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGKKML 265 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCCeEE
Confidence 46789999999999999999999999999999764 689999999999999999988888888775 577899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHH----HHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEE
Q 013727 87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT----LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (437)
Q Consensus 87 vl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 162 (437)
+++|..+||+|-++.|+.-...+++.+..-.|........ -....++||||+|++-+-.++.... .+.+++.||
T Consensus 266 fLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~--~lgdiGtVV 343 (830)
T COG1202 266 FLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGK--DLGDIGTVV 343 (830)
T ss_pred EEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCC--cccccceEE
Confidence 9999999999999999887788888888888765543332 1223468999999999866666543 799999999
Q ss_pred EcccccccccccHHHHHHHHHh---CCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccC-C
Q 013727 163 LDEADRLLNDDFEKSLDEILNV---IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-K 238 (437)
Q Consensus 163 iDE~h~~~~~~~~~~~~~i~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 238 (437)
+||+|.+-+...++.+.-++.. +-+..|.+.+|||..+. ..+++.+....+.+. ..+-.+..+..+..+ .
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-----~RPVplErHlvf~~~e~ 417 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-----ERPVPLERHLVFARNES 417 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec-----CCCCChhHeeeeecCch
Confidence 9999988776666665555443 33578999999999876 456665555444432 222345556666664 4
Q ss_pred ChHHHHHHHHHhc--------CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEc
Q 013727 239 YKDCYLVYILTEV--------SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICT 310 (437)
Q Consensus 239 ~~~~~~~~~l~~~--------~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T 310 (437)
.|...+..+.+.. -.+++|||++|+..|..++..|...|+++..+|++++..+|..+...|.+++..++|+|
T Consensus 418 eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTT 497 (830)
T COG1202 418 EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTT 497 (830)
T ss_pred HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeeh
Confidence 4555555555432 34789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCEEEE----ecCCCChhhHHHHhhhcccCCC--CceEEEEEccc
Q 013727 311 DVASRGLDIPSVDMVIN----YDIPTNSKDYIHRVGRTARAGR--TGVAISLVNQY 360 (437)
Q Consensus 311 ~~~~~Gid~~~~~~Vi~----~~~p~s~~~~~Q~~GR~~R~g~--~g~~i~~~~~~ 360 (437)
-+++-|+|+|.-++++. -.-..|+.+|.|+.|||||-+- .|++++++.+.
T Consensus 498 AAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 498 AALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999987554431 2233589999999999999874 58999998654
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=317.66 Aligned_cols=332 Identities=22% Similarity=0.285 Sum_probs=255.6
Q ss_pred ccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 013727 12 ELGLRDELVEACENVGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (437)
Q Consensus 12 ~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P 90 (437)
...+++.+.+.++..|+.++.+.|+.++.....+ +|+++++|||||||+++++.++..+.+ .+.+++|+||
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~--------~~~k~vYivP 84 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE--------GGGKVVYIVP 84 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------cCCcEEEEeC
Confidence 3447888999999999999999999998887665 999999999999999999999998885 3567999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccc
Q 013727 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (437)
Q Consensus 91 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~ 170 (437)
+++|+.+.+++|+++ ..+|+++...+|+.+...+.. .+++|+|+||+++-..+++... .+..+++||+||+|.+.
T Consensus 85 lkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~~l---~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 85 LKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDERL---ARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLG 159 (766)
T ss_pred hHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchhhh---ccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecC
Confidence 999999999999943 456899999999987655322 4689999999999776766554 57889999999999887
Q ss_pred ccccHHHHHHHHHhCCcc---ceEEEEeecCchHHHHHHHHhcCCCcEEEcccc--cccccCceEEEEEccCCC------
Q 013727 171 NDDFEKSLDEILNVIPRM---RQTYLFSATMTKKVKKLQRACLKNPVKIEAASK--YSTVDTLKQQYRFVPAKY------ 239 (437)
Q Consensus 171 ~~~~~~~~~~i~~~~~~~---~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------ 239 (437)
+...++.++.+....... .|++++|||+++. ..++.+...++.. ..... ........+.+.......
T Consensus 160 d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~-~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~ 237 (766)
T COG1204 160 DRTRGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVE-SDWRPVPLRRGVPYVGAFLGADGKKKTWPLL 237 (766)
T ss_pred CcccCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccc-cCCCCcccccCCccceEEEEecCcccccccc
Confidence 776888888777765543 6899999999985 5677766665541 11111 111112222333333222
Q ss_pred -hHHHHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHhc-------------------------------------CCce
Q 013727 240 -KDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNL-------------------------------------GQRA 280 (437)
Q Consensus 240 -~~~~~~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~-------------------------------------~~~~ 280 (437)
....+...+... .++++||||+|+..+...++.++.. ...+
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 233333333333 6789999999999999998888730 1236
Q ss_pred EeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEE----Eec-----CCCChhhHHHHhhhcccCCCC-
Q 013727 281 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI----NYD-----IPTNSKDYIHRVGRTARAGRT- 350 (437)
Q Consensus 281 ~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi----~~~-----~p~s~~~~~Q~~GR~~R~g~~- 350 (437)
+.+|++++.++|..+.+.|+.|.++||+||++++.|+|+|.-.+|| .|+ .+.++.+++|+.|||||.|-+
T Consensus 318 afHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~ 397 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDD 397 (766)
T ss_pred cccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCC
Confidence 6799999999999999999999999999999999999998766655 366 456788999999999999854
Q ss_pred -ceEEEEEc
Q 013727 351 -GVAISLVN 358 (437)
Q Consensus 351 -g~~i~~~~ 358 (437)
|.++.+..
T Consensus 398 ~G~~~i~~~ 406 (766)
T COG1204 398 YGEAIILAT 406 (766)
T ss_pred CCcEEEEec
Confidence 66666663
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5e-38 Score=310.30 Aligned_cols=321 Identities=18% Similarity=0.196 Sum_probs=238.8
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|+ .|+++|..+...++.|+ ++.+.||+|||+++++|++...+ .+..++|++||++||.|.++.+..
T Consensus 74 ~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al---------~G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 74 VLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL---------EGKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred HhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH---------cCCCeEEEeCCHHHHHHHHHHHHH
Confidence 4688 79999999999998886 99999999999999999986666 577799999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCC-hHHHHHHhCCCCcEEEECchHH-HHHHhcCC-----CCCCCCccEEEEccccccccc-----
Q 013727 105 LGSGISLRCAVLVGGVD-MMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLND----- 172 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~-----~~~~~~~~~vViDE~h~~~~~----- 172 (437)
+...+++++.++.|+.+ ...... ..+++|+|+||++| .+++..+- ...++.+.++|+||+|.++=.
T Consensus 142 l~~~lGl~v~~i~g~~~~~~~r~~--~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tp 219 (790)
T PRK09200 142 VYEFLGLTVGLNFSDIDDASEKKA--IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTP 219 (790)
T ss_pred HHhhcCCeEEEEeCCCCcHHHHHH--hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCc
Confidence 99999999999999988 433332 34599999999998 55554321 124678899999999964211
Q ss_pred -----------ccHHHHHHHHHhCCcc-----------------------------------------------------
Q 013727 173 -----------DFEKSLDEILNVIPRM----------------------------------------------------- 188 (437)
Q Consensus 173 -----------~~~~~~~~i~~~~~~~----------------------------------------------------- 188 (437)
.+...+..+...+...
T Consensus 220 liisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~ 299 (790)
T PRK09200 220 LIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLF 299 (790)
T ss_pred eeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHh
Confidence 0111111111111100
Q ss_pred ----------------------------------------------------------------ceEEEEeecCchHHHH
Q 013727 189 ----------------------------------------------------------------RQTYLFSATMTKKVKK 204 (437)
Q Consensus 189 ----------------------------------------------------------------~~~i~~SAT~~~~~~~ 204 (437)
..+.+||+|....-..
T Consensus 300 ~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e 379 (790)
T PRK09200 300 KRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKE 379 (790)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHH
Confidence 0234555555444444
Q ss_pred HHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHh--cCCCcEEEEecchHHHHHHHHHHHhcCCceEe
Q 013727 205 LQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIP 282 (437)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~ 282 (437)
+...+..+...+ +........-.....+.+...+...+...+.. ..+.++||||+|++.++.++..|...|+++..
T Consensus 380 ~~~~Y~l~v~~I--Pt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~ 457 (790)
T PRK09200 380 FFEVYNMEVVQI--PTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNL 457 (790)
T ss_pred HHHHhCCcEEEC--CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEE
Confidence 444333222222 11111111111123344455566666666654 36789999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCC---CCCC-----EEEEecCCCChhhHHHHhhhcccCCCCceEE
Q 013727 283 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDI---PSVD-----MVINYDIPTNSKDYIHRVGRTARAGRTGVAI 354 (437)
Q Consensus 283 ~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~---~~~~-----~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i 354 (437)
+|+++.+.++..+...+..| .|+|||+++++|+|+ |++. +||+++.|.|...|.||+||+||.|.+|.++
T Consensus 458 L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~ 535 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ 535 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE
Confidence 99999998888888777776 799999999999999 6898 9999999999999999999999999999999
Q ss_pred EEEccccHH
Q 013727 355 SLVNQYELE 363 (437)
Q Consensus 355 ~~~~~~~~~ 363 (437)
++++..|.-
T Consensus 536 ~~is~eD~l 544 (790)
T PRK09200 536 FFISLEDDL 544 (790)
T ss_pred EEEcchHHH
Confidence 999876543
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.7e-38 Score=298.21 Aligned_cols=298 Identities=19% Similarity=0.163 Sum_probs=205.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCh----
Q 013727 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM---- 122 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~---- 122 (437)
++++.+|||||||++|+++++..+... ...+++|++|+++|+.|+.+.+..+... .+..++++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~ 70 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIK 70 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHh
Confidence 579999999999999999999875432 4568999999999999999999987432 23333333211
Q ss_pred -------HHH-HHHh------CCCCcEEEECchHHHHHHhcCCC---CCC--CCccEEEEcccccccccccHHHHHHHHH
Q 013727 123 -------MQQ-TLAL------GKRPHIVVATPGRLMDHLTNTKG---FSL--GTLKYLVLDEADRLLNDDFEKSLDEILN 183 (437)
Q Consensus 123 -------~~~-~~~~------~~~~~iiv~Tp~~l~~~l~~~~~---~~~--~~~~~vViDE~h~~~~~~~~~~~~~i~~ 183 (437)
... .... ....+|+|+||+++...+..... +.+ -..++||+||+|.+.+..+.. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~ 149 (358)
T TIGR01587 71 EMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLE 149 (358)
T ss_pred ccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHH
Confidence 000 0000 12367999999999877654211 111 123789999999988754443 444444
Q ss_pred hCC-ccceEEEEeecCchHHHHHHHHhcCCCcEEEccccccccc-CceEEEEEcc--CCChHHHHHHHHHh-cCCCcEEE
Q 013727 184 VIP-RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVD-TLKQQYRFVP--AKYKDCYLVYILTE-VSASSTMV 258 (437)
Q Consensus 184 ~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~l~~-~~~~~~iV 258 (437)
.++ ...|++++|||++..+..+.......+....... .... ...+.+.... ...+...+..++.. ..+.++||
T Consensus 150 ~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lV 227 (358)
T TIGR01587 150 VLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDL--KEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAI 227 (358)
T ss_pred HHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCC--ccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEE
Confidence 443 4678999999999777666554433221111110 0000 1112221111 12334445555544 35689999
Q ss_pred EecchHHHHHHHHHHHhcCC--ceEeccCCCCHHHHHHH----HHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC
Q 013727 259 FTRTCDATRLLALMLRNLGQ--RAIPISGHMSQSKRLGA----LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT 332 (437)
Q Consensus 259 f~~s~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~----~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~ 332 (437)
||++++.++.++..|++.+. .+..+||++++.+|.+. ++.|++|+.+|||||+++++|+|++ +++||++..|
T Consensus 228 f~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~- 305 (358)
T TIGR01587 228 IVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP- 305 (358)
T ss_pred EECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC-
Confidence 99999999999999988766 48999999999999764 8899999999999999999999994 8888888766
Q ss_pred ChhhHHHHhhhcccCCCC----ceEEEEEccc
Q 013727 333 NSKDYIHRVGRTARAGRT----GVAISLVNQY 360 (437)
Q Consensus 333 s~~~~~Q~~GR~~R~g~~----g~~i~~~~~~ 360 (437)
+++|+||+||+||.|+. |.++++....
T Consensus 306 -~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 306 -IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred -HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 78999999999999854 2555555433
No 67
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=6.4e-38 Score=316.47 Aligned_cols=347 Identities=24% Similarity=0.301 Sum_probs=265.6
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 013727 17 DELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (437)
Q Consensus 17 ~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 96 (437)
..+..++.+.|+..|+.+|.+|+..+.+|++++|..+||||||.+|++||++.+++. +..++||+.||++|++
T Consensus 57 ~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~-------~~a~AL~lYPtnALa~ 129 (851)
T COG1205 57 ESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD-------PSARALLLYPTNALAN 129 (851)
T ss_pred hHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC-------cCccEEEEechhhhHh
Confidence 345778888999999999999999999999999999999999999999999999976 3447899999999999
Q ss_pred HHHHHHHHhhcCCC--cEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCC---CCCCCccEEEEcccccccc
Q 013727 97 QISEQFEALGSGIS--LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG---FSLGTLKYLVLDEADRLLN 171 (437)
Q Consensus 97 q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~---~~~~~~~~vViDE~h~~~~ 171 (437)
.+.+.|+++....+ +.....+|+...........+.++|+++||++|...+..+.. +.++++++||+||+| .+.
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH-tYr 208 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH-TYR 208 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce-ecc
Confidence 99999999988776 888889999888777677788899999999999775544332 246779999999999 444
Q ss_pred cccHHHHHHH-------HHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEcc--------
Q 013727 172 DDFEKSLDEI-------LNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-------- 236 (437)
Q Consensus 172 ~~~~~~~~~i-------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 236 (437)
..|+..+..+ +...+...|+|+.|||..+..+.... +.+......+...... ..........+
T Consensus 209 Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~-l~~~~f~~~v~~~g~~-~~~~~~~~~~p~~~~~~~~ 286 (851)
T COG1205 209 GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEE-LFGRDFEVPVDEDGSP-RGLRYFVRREPPIRELAES 286 (851)
T ss_pred ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHH-hcCCcceeeccCCCCC-CCceEEEEeCCcchhhhhh
Confidence 4454443333 33344678999999999987655554 4444444433332222 23333333333
Q ss_pred -CCChHHHHHHHHHh--cCCCcEEEEecchHHHHHHH----HHHHhcC----CceEeccCCCCHHHHHHHHHHhhCCCce
Q 013727 237 -AKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLA----LMLRNLG----QRAIPISGHMSQSKRLGALNKFKAGECN 305 (437)
Q Consensus 237 -~~~~~~~~~~~l~~--~~~~~~iVf~~s~~~~~~l~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 305 (437)
..........+... ..+-++|+|+.++..++.+. ..+...+ ..+..+++++...+|.++...|++|+..
T Consensus 287 ~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 287 IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 11222223333332 26789999999999999886 4444444 5688899999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEecCCC-ChhhHHHHhhhcccCCCCceEEEEEccc--cHHHHHHHHHHhC
Q 013727 306 ILICTDVASRGLDIPSVDMVINYDIPT-NSKDYIHRVGRTARAGRTGVAISLVNQY--ELEWYLQIEKLIG 373 (437)
Q Consensus 306 ilv~T~~~~~Gid~~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~g~~i~~~~~~--~~~~~~~l~~~~~ 373 (437)
++++|+++.-|+|+.+++.||.++.|. +..++.|+.||+||.++.+..+.+...+ +..+...-+.++.
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999999999 9999999999999999777666666533 3333333444444
No 68
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-38 Score=281.52 Aligned_cols=332 Identities=21% Similarity=0.259 Sum_probs=249.1
Q ss_pred HHHHHHHh-CCCCCC-hHHHHHHHHhhhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 013727 18 ELVEACEN-VGWKTP-SKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (437)
Q Consensus 18 ~~~~~l~~-~g~~~~-~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L 94 (437)
.+.++|++ +|+..+ ++.|++++..+.++ +|+.|++|||+||+++|.+|.+. .+..++|+.|..+|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~------------~~gITIV~SPLiAL 73 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV------------HGGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH------------hCCeEEEehHHHHH
Confidence 46678887 698774 89999999999886 69999999999999999999986 45579999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHH------HhCCCCcEEEECchHHH-----HHHhcCCCCCCCCccEEEE
Q 013727 95 AIQISEQFEALGSGISLRCAVLVGGVDMMQQTL------ALGKRPHIVVATPGRLM-----DHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 95 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~iiv~Tp~~l~-----~~l~~~~~~~~~~~~~vVi 163 (437)
+..+.+.+.++- +++..+.+..+..+..+ .......+++-||+.-. ..|.. ..+-..+.++|+
T Consensus 74 IkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vV 147 (641)
T KOG0352|consen 74 IKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVV 147 (641)
T ss_pred HHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEe
Confidence 999998888763 55555555554433322 22345679999998642 22221 112344889999
Q ss_pred cccccccc--cccHHHHHHHHHhCC--ccceEEEEeecCchHHHH--HHHHhcCCCcEEEcccccccccCceEEEEEccC
Q 013727 164 DEADRLLN--DDFEKSLDEILNVIP--RMRQTYLFSATMTKKVKK--LQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA 237 (437)
Q Consensus 164 DE~h~~~~--~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (437)
||||+... .+|++++..+-+... ++...+++|||.++.+.. +..+.+.+|+.+........ ++.....+-..
T Consensus 148 DEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~--NLFYD~~~K~~ 225 (641)
T KOG0352|consen 148 DEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRD--NLFYDNHMKSF 225 (641)
T ss_pred chhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhh--hhhHHHHHHHH
Confidence 99998877 567777665533322 345689999999988865 44556677776654432211 11100000000
Q ss_pred -CChHHHHHHH----HH---------hcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCC
Q 013727 238 -KYKDCYLVYI----LT---------EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303 (437)
Q Consensus 238 -~~~~~~~~~~----l~---------~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 303 (437)
......+..+ |. ....+..||||.|++++++++-.|...|+++..+|.++...+|..+.+.|.+++
T Consensus 226 I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 226 ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC
Confidence 0001111111 11 012356899999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHH
Q 013727 304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIE 369 (437)
Q Consensus 304 ~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~ 369 (437)
..||+||..+++|+|-|+|++||++++|.+..-|.|..||+||.|....|-+++...|...+..|.
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998877665544
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.7e-37 Score=303.61 Aligned_cols=321 Identities=17% Similarity=0.179 Sum_probs=226.2
Q ss_pred CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
.|+ .|++.| ++..+..++..++.++||+|||++|++|++...+ .+..++|++|+++||.|+++.+..+
T Consensus 67 lgl-rpydVQ--lig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL---------~g~~V~VVTpn~yLA~Rdae~m~~l 134 (762)
T TIGR03714 67 LGM-FPYDVQ--VLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNAL---------TGKGAMLVTTNDYLAKRDAEEMGPV 134 (762)
T ss_pred cCC-CccHHH--HHHHHHhcCCceeEecCCcchHHHHHHHHHHHhh---------cCCceEEeCCCHHHHHHHHHHHHHH
Confidence 455 455555 5554444445799999999999999999876655 4556999999999999999999999
Q ss_pred hcCCCcEEEEEEcCCC---hHHHHHHhCCCCcEEEECchHH-HHHHhcC-----CCCCCCCccEEEEcccccccccc---
Q 013727 106 GSGISLRCAVLVGGVD---MMQQTLALGKRPHIVVATPGRL-MDHLTNT-----KGFSLGTLKYLVLDEADRLLNDD--- 173 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~-----~~~~~~~~~~vViDE~h~~~~~~--- 173 (437)
...+++.+..++++.. ..........+++|+++||++| .+++..+ ....+..+.++|+||||.++-..
T Consensus 135 ~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeart 214 (762)
T TIGR03714 135 YEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQT 214 (762)
T ss_pred HhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcC
Confidence 9999999988877522 2222233335799999999999 5555322 12346789999999999753210
Q ss_pred -------------cHHHHHHHHHhCCcc----------------------------------------------------
Q 013727 174 -------------FEKSLDEILNVIPRM---------------------------------------------------- 188 (437)
Q Consensus 174 -------------~~~~~~~i~~~~~~~---------------------------------------------------- 188 (437)
.......+...+...
T Consensus 215 pliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~ 294 (762)
T TIGR03714 215 PLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYL 294 (762)
T ss_pred CeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHH
Confidence 111111111111110
Q ss_pred -----------------------------------------------------------------ceEEEEeecCchHHH
Q 013727 189 -----------------------------------------------------------------RQTYLFSATMTKKVK 203 (437)
Q Consensus 189 -----------------------------------------------------------------~~~i~~SAT~~~~~~ 203 (437)
..+.+||+|......
T Consensus 295 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~ 374 (762)
T TIGR03714 295 FKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEK 374 (762)
T ss_pred HhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHH
Confidence 124455666544444
Q ss_pred HHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHh--cCCCcEEEEecchHHHHHHHHHHHhcCCceE
Q 013727 204 KLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAI 281 (437)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~ 281 (437)
.+...+..+...+ +........-.....+.+...+...+...+.. ..+.++||||+|++.++.++..|...|+++.
T Consensus 375 Ef~~iY~l~v~~I--Pt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~ 452 (762)
T TIGR03714 375 EFIETYSLSVVKI--PTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHN 452 (762)
T ss_pred HHHHHhCCCEEEc--CCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEE
Confidence 4444332222221 11111101111123344445566666666654 4678999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCC---------CCCEEEEecCCCChhhHHHHhhhcccCCCCce
Q 013727 282 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP---------SVDMVINYDIPTNSKDYIHRVGRTARAGRTGV 352 (437)
Q Consensus 282 ~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~---------~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~ 352 (437)
.+|+++.+.++..+...++.| .|+|||+++++|+|++ ++++|++++.|....+ .||+||+||.|.+|.
T Consensus 453 ~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 453 LLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGS 529 (762)
T ss_pred EecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCcee
Confidence 999999999988887777777 7999999999999999 8999999999988777 999999999999999
Q ss_pred EEEEEccccHH
Q 013727 353 AISLVNQYELE 363 (437)
Q Consensus 353 ~i~~~~~~~~~ 363 (437)
++++++..|.-
T Consensus 530 s~~~is~eD~l 540 (762)
T TIGR03714 530 SQFFVSLEDDL 540 (762)
T ss_pred EEEEEccchhh
Confidence 99999876543
No 70
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.2e-37 Score=300.82 Aligned_cols=322 Identities=18% Similarity=0.174 Sum_probs=240.0
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|+ .|++.|..+...++.|+ ++.++||+|||+++.+|++...+ .+..+.|++||+.||.|.++.+..
T Consensus 52 ~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL---------~G~~V~VvTpt~~LA~qdae~~~~ 119 (745)
T TIGR00963 52 VLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL---------TGKGVHVVTVNDYLAQRDAEWMGQ 119 (745)
T ss_pred HhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH---------hCCCEEEEcCCHHHHHHHHHHHHH
Confidence 3688 69999999999888876 99999999999999999964444 344699999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCC-----CCCCCCccEEEEccccccccccc----
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLNDDF---- 174 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~-----~~~~~~~~~vViDE~h~~~~~~~---- 174 (437)
+...+++++.+++|+.+...+...+ .++|+|+||++| .+++..+- .+.++.+.++|+||+|.++-...
T Consensus 120 l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpL 197 (745)
T TIGR00963 120 VYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPL 197 (745)
T ss_pred HhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHH
Confidence 9999999999999998875554444 489999999999 88887642 23578899999999996533100
Q ss_pred ------------HHHHHHHHHhCCc-------------------------------------------------------
Q 013727 175 ------------EKSLDEILNVIPR------------------------------------------------------- 187 (437)
Q Consensus 175 ------------~~~~~~i~~~~~~------------------------------------------------------- 187 (437)
......+...+..
T Consensus 198 iisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~ 277 (745)
T TIGR00963 198 IISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFE 277 (745)
T ss_pred hhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHh
Confidence 0000011110000
Q ss_pred --------------------------------------------------------------cceEEEEeecCchHHHHH
Q 013727 188 --------------------------------------------------------------MRQTYLFSATMTKKVKKL 205 (437)
Q Consensus 188 --------------------------------------------------------------~~~~i~~SAT~~~~~~~~ 205 (437)
...+.+||+|.......+
T Consensus 278 ~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~ 357 (745)
T TIGR00963 278 KDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEF 357 (745)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHH
Confidence 012445666665555555
Q ss_pred HHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHH--hcCCCcEEEEecchHHHHHHHHHHHhcCCceEec
Q 013727 206 QRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 283 (437)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~ 283 (437)
...+..+...+.........+.. ...+.+...+...+...+. ...+.++||||+|++.++.+++.|.+.|+++..+
T Consensus 358 ~~iY~l~vv~IPtnkp~~R~d~~--d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~L 435 (745)
T TIGR00963 358 EKIYNLEVVVVPTNRPVIRKDLS--DLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVL 435 (745)
T ss_pred HHHhCCCEEEeCCCCCeeeeeCC--CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe
Confidence 55444433332222111111111 1122223333334444332 3478999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCC-------CCEEEEecCCCChhhHHHHhhhcccCCCCceEEEE
Q 013727 284 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS-------VDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 356 (437)
Q Consensus 284 ~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~-------~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~ 356 (437)
|++ +.+|+..+..|+.+...|+|||+++++|+|++. ..+||+++.|.|...|.|+.||+||.|.+|.+.++
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 998 889999999999999999999999999999988 45999999999999999999999999999999999
Q ss_pred EccccHHH
Q 013727 357 VNQYELEW 364 (437)
Q Consensus 357 ~~~~~~~~ 364 (437)
++..|.-.
T Consensus 514 ls~eD~l~ 521 (745)
T TIGR00963 514 LSLEDNLM 521 (745)
T ss_pred EeccHHHH
Confidence 98776443
No 71
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.5e-36 Score=311.33 Aligned_cols=323 Identities=27% Similarity=0.317 Sum_probs=236.2
Q ss_pred CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 27 GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 27 g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
+..++++||.+++..++.+ +.++++|||+|||+++++++...+.. .+.++||++||++|+.|+.+.++++.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--------~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 82 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--------KGGKVLILAPTKPLVEQHAEFFRKFL 82 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--------CCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 3347999999999998887 99999999999999998888776632 56789999999999999999999886
Q ss_pred cCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCC
Q 013727 107 SGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186 (437)
Q Consensus 107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~ 186 (437)
...+..+..++|+...... .....+.+|+|+||+.+...+... .+.+.++++||+||||++........+...+....
T Consensus 83 ~~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~ 160 (773)
T PRK13766 83 NIPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAG-RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDA 160 (773)
T ss_pred CCCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcC-CCChhhCcEEEEECCccccccccHHHHHHHHHhcC
Confidence 5444577788887766543 334456899999999998776553 35788999999999999876544444444444444
Q ss_pred ccceEEEEeecCchHHHHH---HHHhcCCCcEEEcc----------------------cc--------------------
Q 013727 187 RMRQTYLFSATMTKKVKKL---QRACLKNPVKIEAA----------------------SK-------------------- 221 (437)
Q Consensus 187 ~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~----------------------~~-------------------- 221 (437)
..++++++|||+......+ +.........+... ..
T Consensus 161 ~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~ 240 (773)
T PRK13766 161 KNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLK 240 (773)
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667999999985332221 11111000000000 00
Q ss_pred -cccc---c-------------CceEEE----------------------------------------------------
Q 013727 222 -YSTV---D-------------TLKQQY---------------------------------------------------- 232 (437)
Q Consensus 222 -~~~~---~-------------~~~~~~---------------------------------------------------- 232 (437)
.... . .+....
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~ 320 (773)
T PRK13766 241 ELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGS 320 (773)
T ss_pred HCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCc
Confidence 0000 0 000000
Q ss_pred --------------------EEccCCChHHHHHHHHHh----cCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCC--
Q 013727 233 --------------------RFVPAKYKDCYLVYILTE----VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGH-- 286 (437)
Q Consensus 233 --------------------~~~~~~~~~~~~~~~l~~----~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~-- 286 (437)
.......|...+..++.. ..+.++||||+++..++.+.+.|...++.+..+||.
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~ 400 (773)
T PRK13766 321 KASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQAS 400 (773)
T ss_pred HHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccc
Confidence 000011223333344433 467899999999999999999999999998888875
Q ss_pred ------CCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccc
Q 013727 287 ------MSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY 360 (437)
Q Consensus 287 ------~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~ 360 (437)
+++.+|..++.+|++|+.++||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.++.++...
T Consensus 401 ~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~ 479 (773)
T PRK13766 401 KDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKG 479 (773)
T ss_pred ccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCC
Confidence 899999999999999999999999999999999999999999999999999999999999865 7777777654
Q ss_pred c
Q 013727 361 E 361 (437)
Q Consensus 361 ~ 361 (437)
.
T Consensus 480 t 480 (773)
T PRK13766 480 T 480 (773)
T ss_pred C
Confidence 4
No 72
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=5.2e-38 Score=277.98 Aligned_cols=365 Identities=34% Similarity=0.518 Sum_probs=285.7
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhc----------
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQ---------- 77 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~---------- 77 (437)
+.|+++|.-|++-.+...+...-||++|.++||.++.|-+++..+.||||||-+|.+|+++.+.+.....
T Consensus 2 ~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etlrd~~egk~gk~~~ 81 (725)
T KOG0349|consen 2 TAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGGM 81 (725)
T ss_pred cchHhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHHHHHhHhhcccCCCcc
Confidence 5799999999999999999999999999999999999999999999999999999999998775321100
Q ss_pred --------------------------------------------------------------------------------
Q 013727 78 -------------------------------------------------------------------------------- 77 (437)
Q Consensus 78 -------------------------------------------------------------------------------- 77 (437)
T Consensus 82 ~~ga~~~w~mn~~Drg~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLdlGt~~ 161 (725)
T KOG0349|consen 82 ADGAPREWKMNKQDRGLALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLDLGTGL 161 (725)
T ss_pred cCCCccccccCccccCceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEeccCceeeechhhcccccccCccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 013727 78 -------------------------------------------------------------------------------- 77 (437)
Q Consensus 78 -------------------------------------------------------------------------------- 77 (437)
T Consensus 162 ~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~lfPAvvlkNael~fNF 241 (725)
T KOG0349|consen 162 DGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSNLFPAVVLKNAELSFNF 241 (725)
T ss_pred cccccCccCccccccccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChhhcccccchheeeccceEEEec
Confidence
Q ss_pred ----------------------------------------CCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC---CcEEE
Q 013727 78 ----------------------------------------RTVPAFFACVLSPTRELAIQISEQFEALGSGI---SLRCA 114 (437)
Q Consensus 78 ----------------------------------------~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~---~~~~~ 114 (437)
..+..+.++|+-|+++|++|..+.+++|-... .++..
T Consensus 242 G~~~FKfpPgngFva~s~Ap~e~~~~n~~~g~~a~~~~~k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~l 321 (725)
T KOG0349|consen 242 GSQPFKFPPGNGFVAVSDAPNEHSKANVNWGSYAEAPSAKPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSL 321 (725)
T ss_pred CCCccccCCCCceEEeecCCccccccCccccccccCcccccCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhh
Confidence 01345788999999999999999777664433 45666
Q ss_pred EEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCc------c
Q 013727 115 VLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR------M 188 (437)
Q Consensus 115 ~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~------~ 188 (437)
++.||.....+...+.++.+|+|+||+++.+.+.... +.+.++.++|+||++.++..++.+.+..+...+|. .
T Consensus 322 Lmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~-~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~r 400 (725)
T KOG0349|consen 322 LMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL-VTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFR 400 (725)
T ss_pred hhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc-eeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcc
Confidence 7888888888999999999999999999999888754 57889999999999999998888888888777663 3
Q ss_pred ceEEEEeecCch-HHHHHHHHhcCCCcEEEcccccccccCceEEEEEccC------------------------------
Q 013727 189 RQTYLFSATMTK-KVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA------------------------------ 237 (437)
Q Consensus 189 ~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 237 (437)
.|.+++|||+.. ++..+....++-|..+....+...+....+....+..
T Consensus 401 lq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~S 480 (725)
T KOG0349|consen 401 LQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVS 480 (725)
T ss_pred cccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCC
Confidence 588999999753 3444445555555544443332222221111111110
Q ss_pred CC---------hHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcC---CceEeccCCCCHHHHHHHHHHhhCCCce
Q 013727 238 KY---------KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG---QRAIPISGHMSQSKRLGALNKFKAGECN 305 (437)
Q Consensus 238 ~~---------~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 305 (437)
.. +-++-...+....-.++||||.++..|..+..++++.| +.|+.+||+..+.+|.+.++.|..++.+
T Consensus 481 pe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk 560 (725)
T KOG0349|consen 481 PENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK 560 (725)
T ss_pred CCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE
Confidence 00 11112233444566889999999999999999999765 5799999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhC
Q 013727 306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIG 373 (437)
Q Consensus 306 ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~ 373 (437)
.||||+++++|+|+.++.++||...|.....|+|||||+||+.+-|.+|+++.......+....+.-+
T Consensus 561 flictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srg 628 (725)
T KOG0349|consen 561 FLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRG 628 (725)
T ss_pred EEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccC
Confidence 99999999999999999999999999999999999999999988899998885443333333443333
No 73
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.5e-36 Score=284.46 Aligned_cols=348 Identities=20% Similarity=0.217 Sum_probs=257.0
Q ss_pred cCCCHHHH-HHHHhCCCCCChHHHHHHHHhhhcC------CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEE
Q 013727 13 LGLRDELV-EACENVGWKTPSKIQAEAIPHALEG------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (437)
Q Consensus 13 ~~l~~~~~-~~l~~~g~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (437)
++...++. +.+.+++| +||..|++++..+... .+-|++|+.|||||++++++++..+. .+.++
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---------~G~Q~ 314 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---------AGYQA 314 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---------cCCee
Confidence 34445544 45578999 6999999999999864 35799999999999999999998887 78899
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHH---hCC-CCcEEEECchHHHHHHhcCCCCCCCCccEE
Q 013727 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA---LGK-RPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (437)
Q Consensus 86 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~v 161 (437)
.+++||.-||+|.++.+.++...+++++..++|.......... +.+ ..+|||+|..-+.+ ...+.++.+|
T Consensus 315 ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd------~V~F~~LgLV 388 (677)
T COG1200 315 ALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD------KVEFHNLGLV 388 (677)
T ss_pred EEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc------ceeecceeEE
Confidence 9999999999999999999999999999999998766544433 333 48999999654322 2478899999
Q ss_pred EEcccccccccccHHHHHHHHHhCCc-cceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCCh
Q 013727 162 VLDEADRLLNDDFEKSLDEILNVIPR-MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK 240 (437)
Q Consensus 162 ViDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (437)
|+||-|++.- .-...+..-.. .+.++.||||+.+..-.+......+-..+... +..........++....
T Consensus 389 IiDEQHRFGV-----~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdEl----P~GRkpI~T~~i~~~~~ 459 (677)
T COG1200 389 IIDEQHRFGV-----HQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDEL----PPGRKPITTVVIPHERR 459 (677)
T ss_pred EEeccccccH-----HHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccC----CCCCCceEEEEeccccH
Confidence 9999998543 33333333334 57899999999876444333332222222211 11222233445555555
Q ss_pred HHHHHHHHHhc-CCCcEEEEecchHHH--------HHHHHHHHhc--CCceEeccCCCCHHHHHHHHHHhhCCCceEEEE
Q 013727 241 DCYLVYILTEV-SASSTMVFTRTCDAT--------RLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILIC 309 (437)
Q Consensus 241 ~~~~~~~l~~~-~~~~~iVf~~s~~~~--------~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~ 309 (437)
...+..+..+. .+.++.+.|+-+++. ..+++.|+.. +.++..+||.|+.+++.+++.+|++|+++||||
T Consensus 460 ~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVa 539 (677)
T COG1200 460 PEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVA 539 (677)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEE
Confidence 55555554444 678899999976654 4566666643 456999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCEEEEecCC-CChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCHHH
Q 013727 310 TDVASRGLDIPSVDMVINYDIP-TNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEEE 385 (437)
Q Consensus 310 T~~~~~Gid~~~~~~Vi~~~~p-~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 385 (437)
|.+++.|+|+|++++.|+.+.- ...+.+.|-.||+||.+..+.|++++.+...+....-.+.+..+.+.+...+.+
T Consensus 540 TTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~D 616 (677)
T COG1200 540 TTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEED 616 (677)
T ss_pred eeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhh
Confidence 9999999999999988776653 578899999999999999999999998877444333334444444444444433
No 74
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.5e-37 Score=308.76 Aligned_cols=334 Identities=21% Similarity=0.232 Sum_probs=255.4
Q ss_pred HHHHHH-HhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 013727 18 ELVEAC-ENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (437)
Q Consensus 18 ~~~~~l-~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 96 (437)
+....+ ..+|...+++-|.+++..++.|++++|.+|||+||+++|.+|++- .++.+|||.|..+|.+
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l------------~~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL------------LGGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc------------cCCceEEeccHHHHHH
Confidence 344444 568999999999999999999999999999999999999999875 5557999999999998
Q ss_pred HHHHHHHHhhcCCCcEEEEEEcCCChHHHHH---HhCC---CCcEEEECchHHHHHHhcC-CCCCCCC---ccEEEEccc
Q 013727 97 QISEQFEALGSGISLRCAVLVGGVDMMQQTL---ALGK---RPHIVVATPGRLMDHLTNT-KGFSLGT---LKYLVLDEA 166 (437)
Q Consensus 97 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~---~~~iiv~Tp~~l~~~l~~~-~~~~~~~---~~~vViDE~ 166 (437)
.+...+... ++....+.++.....+.. .+.. ..+|++.||+++...-.-. ....+.. +.++|+|||
T Consensus 319 DQv~~L~~~----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEA 394 (941)
T KOG0351|consen 319 DQVTHLSKK----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEA 394 (941)
T ss_pred HHHHhhhhc----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHH
Confidence 777766443 588888888877643322 2222 4789999999874421110 1113333 889999999
Q ss_pred ccccc--cccHHHHHHHHHhCC--ccceEEEEeecCchHHHHHHHHhc--CCCcEEEcccccccccCceEEEEEccCCCh
Q 013727 167 DRLLN--DDFEKSLDEILNVIP--RMRQTYLFSATMTKKVKKLQRACL--KNPVKIEAASKYSTVDTLKQQYRFVPAKYK 240 (437)
Q Consensus 167 h~~~~--~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (437)
|+... .+|++.+..+..... +..+++++|||.+..+..-.-..+ .++..+. .....+++...+..-.....
T Consensus 395 HCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k~~~~~ 471 (941)
T KOG0351|consen 395 HCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPKTDKDA 471 (941)
T ss_pred HHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEeccCccc
Confidence 98877 568887776644332 225799999999887765443333 3444221 11223444433333222222
Q ss_pred HHHHHH-HHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCC
Q 013727 241 DCYLVY-ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDI 319 (437)
Q Consensus 241 ~~~~~~-~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~ 319 (437)
...+.. .-.......+||||.++..++.++..|+..++.+..+|++|+..+|..+...|..++++|+|||-++++|||.
T Consensus 472 ~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK 551 (941)
T KOG0351|consen 472 LLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK 551 (941)
T ss_pred hHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC
Confidence 222333 3334477899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHH
Q 013727 320 PSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEK 370 (437)
Q Consensus 320 ~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~ 370 (437)
|+|+.||||..|.|.+.|+|-+|||||.|....|++|+...|...+..+..
T Consensus 552 ~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 552 PDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred CceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987665554433
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=4.9e-36 Score=279.42 Aligned_cols=290 Identities=16% Similarity=0.175 Sum_probs=199.7
Q ss_pred HHHHHHHhhhcCCc--EEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcC---
Q 013727 34 IQAEAIPHALEGKD--LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG--- 108 (437)
Q Consensus 34 ~Q~~~~~~~~~~~~--~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~--- 108 (437)
+|.++++.+..+.+ +++.+|||||||.+|++|++. ...+++|++|+++|++|+.+.++.+...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH------------GENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH------------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 59999999999864 788999999999999998874 2335799999999999999999887632
Q ss_pred -CCcEEEEEEcCCChHH--------------------HHHHhCCCCcEEEECchHHHHHHhcC---CCC----CCCCccE
Q 013727 109 -ISLRCAVLVGGVDMMQ--------------------QTLALGKRPHIVVATPGRLMDHLTNT---KGF----SLGTLKY 160 (437)
Q Consensus 109 -~~~~~~~~~g~~~~~~--------------------~~~~~~~~~~iiv~Tp~~l~~~l~~~---~~~----~~~~~~~ 160 (437)
.++.+..+.|...... ........+.|+++||+.|...+... +.. .+..+++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 2455666666522210 00011236789999999986554321 110 1478999
Q ss_pred EEEccccccccccc-----HHHHHHHHHhCCccceEEEEeecCchHHHHHHHHh--cCCCcEEEccccccc---------
Q 013727 161 LVLDEADRLLNDDF-----EKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRAC--LKNPVKIEAASKYST--------- 224 (437)
Q Consensus 161 vViDE~h~~~~~~~-----~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------- 224 (437)
||+||+|.+..... ......++.......+++++|||+++.+....... ++.+........+..
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEAD 228 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcc
Confidence 99999997654221 11233333433445689999999998866665543 333332222220000
Q ss_pred ---------ccCceEEEEEccCCChHHHHHHHHH-------hcCCCcEEEEecchHHHHHHHHHHHhcC--CceEeccCC
Q 013727 225 ---------VDTLKQQYRFVPAKYKDCYLVYILT-------EVSASSTMVFTRTCDATRLLALMLRNLG--QRAIPISGH 286 (437)
Q Consensus 225 ---------~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~iVf~~s~~~~~~l~~~l~~~~--~~~~~~~~~ 286 (437)
.+.+...+.. ....+...+..++. ...++++||||+++..++.++..|+..+ ..+..+||.
T Consensus 229 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred ccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 0133333333 33333333322222 2356789999999999999999999864 578889999
Q ss_pred CCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcc
Q 013727 287 MSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTA 345 (437)
Q Consensus 287 ~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~ 345 (437)
+++.+|.+. ++.+|||||+++++|+|++.+ .|| ++ |.+.+.|+||+||+|
T Consensus 308 ~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999998755 378999999999999999886 555 45 889999999999986
No 76
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=290.58 Aligned_cols=320 Identities=28% Similarity=0.298 Sum_probs=227.2
Q ss_pred CCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcC
Q 013727 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (437)
Q Consensus 29 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 108 (437)
-.+|.||.+.+-.++ +++++|++|||+|||++++..++.++... +..++|+++|++-|+.|+...+..++..
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~-------p~~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR-------PKGKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC-------CcceEEEeeCCchHHHHHHHHHhhccCc
Confidence 369999999999999 99999999999999999888888887654 5578999999999999999888887755
Q ss_pred CCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHH-HHHHHHhCCc
Q 013727 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKS-LDEILNVIPR 187 (437)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~-~~~i~~~~~~ 187 (437)
..+....||.........+....+|+|+||+.|.+.+.+.....++.+.++||||||+.....-+.. +...+..-..
T Consensus 133 --~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 133 --YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred --ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 4455555554433333355567899999999999888775544578899999999999887554444 4455555545
Q ss_pred cceEEEEeecCchHHHHHHHHhcCC-------------------------Cc----------------------------
Q 013727 188 MRQTYLFSATMTKKVKKLQRACLKN-------------------------PV---------------------------- 214 (437)
Q Consensus 188 ~~~~i~~SAT~~~~~~~~~~~~~~~-------------------------~~---------------------------- 214 (437)
..|++++|||+............+- |.
T Consensus 211 ~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~ 290 (746)
T KOG0354|consen 211 GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEG 290 (746)
T ss_pred cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcC
Confidence 5599999999875433222111100 00
Q ss_pred --EEEccc----------ccccccCceEE----------------------EEEcc------------------------
Q 013727 215 --KIEAAS----------KYSTVDTLKQQ----------------------YRFVP------------------------ 236 (437)
Q Consensus 215 --~~~~~~----------~~~~~~~~~~~----------------------~~~~~------------------------ 236 (437)
.+.... ......+..+. ..+++
T Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~ 370 (746)
T KOG0354|consen 291 LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEA 370 (746)
T ss_pred ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcc
Confidence 000000 00000000000 00000
Q ss_pred --------------------C--CChHHHHHHHH----HhcCCCcEEEEecchHHHHHHHHHHHhc---CCceEec----
Q 013727 237 --------------------A--KYKDCYLVYIL----TEVSASSTMVFTRTCDATRLLALMLRNL---GQRAIPI---- 283 (437)
Q Consensus 237 --------------------~--~~~~~~~~~~l----~~~~~~~~iVf~~s~~~~~~l~~~l~~~---~~~~~~~---- 283 (437)
. ..+...+..++ ......++||||.+++.|..+..+|.+. +++...+
T Consensus 371 ~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~ 450 (746)
T KOG0354|consen 371 RLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQG 450 (746)
T ss_pred hhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecc
Confidence 0 00111111122 2235578999999999999999999832 2232222
Q ss_pred ----cCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEcc
Q 013727 284 ----SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 284 ----~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
..+|++.++.++++.|++|+.+|||||+++++|+|++.|+.||-||...|+..++||.|| ||+ +.|.++++.+.
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~ 528 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTG 528 (746)
T ss_pred ccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcc
Confidence 247999999999999999999999999999999999999999999999999999999999 996 56888888874
Q ss_pred c
Q 013727 360 Y 360 (437)
Q Consensus 360 ~ 360 (437)
.
T Consensus 529 ~ 529 (746)
T KOG0354|consen 529 S 529 (746)
T ss_pred h
Confidence 3
No 77
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.8e-36 Score=294.13 Aligned_cols=307 Identities=17% Similarity=0.175 Sum_probs=211.2
Q ss_pred CChHHHHHHHHhhhc-C--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 30 TPSKIQAEAIPHALE-G--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~-~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
.|||||.+++..+.. + +..++++|||+|||++.+..+. . ...++||+||+..|+.||.++|.++.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~-----------l~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-T-----------VKKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-H-----------hCCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 489999999999874 3 4789999999999998764432 2 23459999999999999999999986
Q ss_pred cCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcC-------CCCCCCCccEEEEcccccccccccHHHHH
Q 013727 107 SGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT-------KGFSLGTLKYLVLDEADRLLNDDFEKSLD 179 (437)
Q Consensus 107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-------~~~~~~~~~~vViDE~h~~~~~~~~~~~~ 179 (437)
......+..++|+... ......+|+|+|++++.....+. ..+.-..+++||+||||++.... +.
T Consensus 323 ~l~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~----fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM----FR 393 (732)
T ss_pred CCCCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH----HH
Confidence 5444556666665322 11224789999998875322111 11233568999999999885544 44
Q ss_pred HHHHhCCccceEEEEeecCchHHHHH--HHHhcCCCcEEEccccc----ccccCceEEEEEc------------------
Q 013727 180 EILNVIPRMRQTYLFSATMTKKVKKL--QRACLKNPVKIEAASKY----STVDTLKQQYRFV------------------ 235 (437)
Q Consensus 180 ~i~~~~~~~~~~i~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------------------ 235 (437)
.++..+.. ...+++|||+...-... ...+++ |..+...-.. .........-..+
T Consensus 394 ~il~~l~a-~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQA-HCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcCc-CcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 45555443 34799999986432211 122222 2222111100 0000111000111
Q ss_pred -----cCCChHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCC-CceEE
Q 013727 236 -----PAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG-ECNIL 307 (437)
Q Consensus 236 -----~~~~~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~il 307 (437)
.+..+...+..++... .+.++||||.+...+..++..|. +..+||++++.+|.++++.|++| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 1122333344455543 67899999999999999988772 45689999999999999999875 78999
Q ss_pred EEcCCCCCCCCCCCCCEEEEecCCC-ChhhHHHHhhhcccCCCCceE-------EEEEccccHHH
Q 013727 308 ICTDVASRGLDIPSVDMVINYDIPT-NSKDYIHRVGRTARAGRTGVA-------ISLVNQYELEW 364 (437)
Q Consensus 308 v~T~~~~~Gid~~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~g~~-------i~~~~~~~~~~ 364 (437)
|+|+++.+|+|+|++++||+++.|. |...|+||+||++|.+..|.+ +++++++..+.
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHH
Confidence 9999999999999999999999984 999999999999999765543 78887765553
No 78
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=3.7e-35 Score=256.12 Aligned_cols=333 Identities=20% Similarity=0.274 Sum_probs=253.4
Q ss_pred ccccCCCHHHHHHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 013727 10 FKELGLRDELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL 88 (437)
Q Consensus 10 f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl 88 (437)
-+.+|++.+.-..|+. +.++.++|.|..+++..+.+.++++..|||.||+++|.+|++. ....+||+
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~------------adg~alvi 140 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC------------ADGFALVI 140 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh------------cCCceEee
Confidence 4567889999998875 7889999999999999999999999999999999999999986 56679999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHH----HHHh--CCCCcEEEECchHHHH------HHhcCCCCCCC
Q 013727 89 SPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ----TLAL--GKRPHIVVATPGRLMD------HLTNTKGFSLG 156 (437)
Q Consensus 89 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~--~~~~~iiv~Tp~~l~~------~l~~~~~~~~~ 156 (437)
||..+|++.+.-.++.++ +....+....+..+- .... .....+++.||+.+.. .+.. .+...
T Consensus 141 ~plislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek--a~~~~ 214 (695)
T KOG0353|consen 141 CPLISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK--ALEAG 214 (695)
T ss_pred chhHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH--Hhhcc
Confidence 999999999888888875 443344333333211 1111 2346799999998743 2322 34577
Q ss_pred CccEEEEcccccccc--cccHHHHHHH--HHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEE
Q 013727 157 TLKYLVLDEADRLLN--DDFEKSLDEI--LNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY 232 (437)
Q Consensus 157 ~~~~vViDE~h~~~~--~~~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (437)
.+.+|-+||+|+... .+|++.+..+ +...-+..+++++|||.++.+-.-.+..+.-...+..... ...+++....
T Consensus 215 ~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~-fnr~nl~yev 293 (695)
T KOG0353|consen 215 FFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG-FNRPNLKYEV 293 (695)
T ss_pred eeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc-cCCCCceeEe
Confidence 799999999998877 4577665543 3333345669999999987765544443322212222211 1223444444
Q ss_pred EEccCCChH--HHHHHHH-HhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEE
Q 013727 233 RFVPAKYKD--CYLVYIL-TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILIC 309 (437)
Q Consensus 233 ~~~~~~~~~--~~~~~~l-~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~ 309 (437)
..-|..... ..+..++ ....+...||||-+.+.++.++..|+.+|+.+..+|..|.+.+|.-+-+.|..|+++|+|+
T Consensus 294 ~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqviva 373 (695)
T KOG0353|consen 294 RQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVA 373 (695)
T ss_pred eeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEE
Confidence 444443322 1222222 2446778999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCEEEEecCCCChhhHHH-------------------------------------------Hhhhccc
Q 013727 310 TDVASRGLDIPSVDMVINYDIPTNSKDYIH-------------------------------------------RVGRTAR 346 (437)
Q Consensus 310 T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q-------------------------------------------~~GR~~R 346 (437)
|-+++.|||-|++++||+.++|.|.+.|.| ..||+||
T Consensus 374 tvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragr 453 (695)
T KOG0353|consen 374 TVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGR 453 (695)
T ss_pred EeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcccccc
Confidence 999999999999999999999999999999 6799999
Q ss_pred CCCCceEEEEEcccc
Q 013727 347 AGRTGVAISLVNQYE 361 (437)
Q Consensus 347 ~g~~g~~i~~~~~~~ 361 (437)
.+.+..|++++.-.|
T Consensus 454 d~~~a~cilyy~~~d 468 (695)
T KOG0353|consen 454 DDMKADCILYYGFAD 468 (695)
T ss_pred CCCcccEEEEechHH
Confidence 999999999986444
No 79
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.6e-34 Score=292.93 Aligned_cols=302 Identities=23% Similarity=0.320 Sum_probs=212.3
Q ss_pred hHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc----HHHHHHHHHHHHH-hh
Q 013727 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT----RELAIQISEQFEA-LG 106 (437)
Q Consensus 32 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~----~~L~~q~~~~~~~-~~ 106 (437)
..+-.+++..+..++.++++|+||||||+ .+|.+.... .. .....+++.-|. ++||.++++++.. ++
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~--g~----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLEL--GR----GVKGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHc--CC----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 55556777777777888999999999998 456332211 10 012244455574 5888888877764 44
Q ss_pred cCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccc-cccccccHHH-HHHHHHh
Q 013727 107 SGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD-RLLNDDFEKS-LDEILNV 184 (437)
Q Consensus 107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h-~~~~~~~~~~-~~~i~~~ 184 (437)
...|..+ .. ......+++|+|+|||+|++.+.... .++++++||||||| ++++.+|... +..++..
T Consensus 148 ~~VGY~v----rf------~~~~s~~t~I~v~TpG~LL~~l~~d~--~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~ 215 (1294)
T PRK11131 148 GCVGYKV----RF------NDQVSDNTMVKLMTDGILLAEIQQDR--LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR 215 (1294)
T ss_pred ceeceee----cC------ccccCCCCCEEEEChHHHHHHHhcCC--ccccCcEEEecCccccccccchHHHHHHHhhhc
Confidence 3333322 11 11223568999999999999887654 48999999999999 6888877653 3443332
Q ss_pred CCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCC---hHHHHHHHH------HhcCCCc
Q 013727 185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY---KDCYLVYIL------TEVSASS 255 (437)
Q Consensus 185 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l------~~~~~~~ 255 (437)
. +..|+|+||||++. ..+...+.+.|. +.+.... ..+...|....... +...+..++ .....+.
T Consensus 216 r-pdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~Gd 288 (1294)
T PRK11131 216 R-PDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGD 288 (1294)
T ss_pred C-CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCC
Confidence 2 45789999999974 467776665553 3333222 12334444433221 122222222 2235678
Q ss_pred EEEEecchHHHHHHHHHHHhcCCc---eEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecC--
Q 013727 256 TMVFTRTCDATRLLALMLRNLGQR---AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI-- 330 (437)
Q Consensus 256 ~iVf~~s~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~-- 330 (437)
+|||+++..+++.+++.|+..+.+ +..+||++++.+|..+++. .|..+|||||+++++|+|+|++++||+++.
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k 366 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTAR 366 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcc
Confidence 999999999999999999987764 6689999999999999876 578899999999999999999999999862
Q ss_pred -------------C---CChhhHHHHhhhcccCCCCceEEEEEccccHH
Q 013727 331 -------------P---TNSKDYIHRVGRTARAGRTGVAISLVNQYELE 363 (437)
Q Consensus 331 -------------p---~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~ 363 (437)
| .|.++|.||.||+||. ..|.|+.+++..+..
T Consensus 367 ~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 367 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred ccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 3 4568999999999998 689999999876543
No 80
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=9.4e-34 Score=275.38 Aligned_cols=337 Identities=22% Similarity=0.283 Sum_probs=246.6
Q ss_pred HhCCCCCChHHHHHHHHhhhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhc-CCCCCeEEEEEcCcHHHHHHHHHH
Q 013727 24 ENVGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQ-RTVPAFFACVLSPTRELAIQISEQ 101 (437)
Q Consensus 24 ~~~g~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~-~~~~~~~~lvl~P~~~L~~q~~~~ 101 (437)
.-++|..++.+|..++|.+... .+.||+||||||||..|++.|+..+.++.... ....+.+++|++|+++||..+.+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 3468889999999999999865 69999999999999999999999887632211 122577899999999999999999
Q ss_pred HHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCC---CCCCCCccEEEEcccccccccccHHHH
Q 013727 102 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK---GFSLGTLKYLVLDEADRLLNDDFEKSL 178 (437)
Q Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~---~~~~~~~~~vViDE~h~~~~~~~~~~~ 178 (437)
+.+-...+++.|.-++|+........ ..++|+|+||+++ +.+.+.. .--++.+.+||+||+| ++.++.++.+
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~tei---~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVH-lLhd~RGpvl 258 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTEI---ADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVH-LLHDDRGPVL 258 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHHH---HhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeeh-hhcCcccchH
Confidence 88877778999999999988765442 3589999999987 3333211 1135678999999999 6677788888
Q ss_pred HHHHHhCC-------ccceEEEEeecCchHHHHHHHHhcCC-CcEEEcccccccccCceEEEEEccCC---ChHH-----
Q 013727 179 DEILNVIP-------RMRQTYLFSATMTKKVKKLQRACLKN-PVKIEAASKYSTVDTLKQQYRFVPAK---YKDC----- 242 (437)
Q Consensus 179 ~~i~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----- 242 (437)
+.|..... ...+++++|||+|+- .+++.+.--+ +..+..-.....+-.+.+.+.-.+.. ....
T Consensus 259 EtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 259 ETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred HHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHH
Confidence 87766543 455799999999986 4555544333 33333333333444555555444433 1111
Q ss_pred HHHHHHHh-cCCCcEEEEecchHHHHHHHHHHHhcC-----------------------CceEeccCCCCHHHHHHHHHH
Q 013727 243 YLVYILTE-VSASSTMVFTRTCDATRLLALMLRNLG-----------------------QRAIPISGHMSQSKRLGALNK 298 (437)
Q Consensus 243 ~~~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~~-----------------------~~~~~~~~~~~~~~r~~~~~~ 298 (437)
.....++. ..+.+++|||.++..+.+.|+.|.+.+ .....+|.||..++|.-+...
T Consensus 338 ~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 338 CYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 11122222 267899999999999988888886531 235678999999999999999
Q ss_pred hhCCCceEEEEcCCCCCCCCCCCCCEEEEecCC-----------CChhhHHHHhhhcccCC--CCceEEEEEccccHHHH
Q 013727 299 FKAGECNILICTDVASRGLDIPSVDMVINYDIP-----------TNSKDYIHRVGRTARAG--RTGVAISLVNQYELEWY 365 (437)
Q Consensus 299 f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p-----------~s~~~~~Q~~GR~~R~g--~~g~~i~~~~~~~~~~~ 365 (437)
|..|.++||+||.+++.|+|+|. .+||.-+.+ .+..+.+|..|||||-. ..|.++.+.+.+-.+.+
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 99999999999999999999976 445443322 24567899999999975 45888888766655544
Q ss_pred HH
Q 013727 366 LQ 367 (437)
Q Consensus 366 ~~ 367 (437)
..
T Consensus 497 ~s 498 (1230)
T KOG0952|consen 497 ES 498 (1230)
T ss_pred HH
Confidence 43
No 81
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2e-33 Score=284.41 Aligned_cols=337 Identities=17% Similarity=0.128 Sum_probs=221.9
Q ss_pred CChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 30 TPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
.|.|||..++..++.. .++++...+|.|||..+.+.+...+.. . ...++||+||. .|..||..++.+..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g------~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-G------RAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-C------CCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 4999999999887654 479999999999999876544443332 1 44579999997 89999999986543
Q ss_pred CCCcEEEEEEcCCChHHHH--HHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccc--ccHHHHHHHHH
Q 013727 108 GISLRCAVLVGGVDMMQQT--LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND--DFEKSLDEILN 183 (437)
Q Consensus 108 ~~~~~~~~~~g~~~~~~~~--~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~--~~~~~~~~i~~ 183 (437)
++....+.++....... .......+++|+|.+.+...-.....+.-..+++||+||||++-.. .-...+..+..
T Consensus 223 --~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 223 --NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred --CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 24444443332111000 0111246899999887754211101122346899999999998631 11112333322
Q ss_pred hCCccceEEEEeecCchH-HH------------------HHHH-------------Hhc-CCCc----------------
Q 013727 184 VIPRMRQTYLFSATMTKK-VK------------------KLQR-------------ACL-KNPV---------------- 214 (437)
Q Consensus 184 ~~~~~~~~i~~SAT~~~~-~~------------------~~~~-------------~~~-~~~~---------------- 214 (437)
.......++++|||+... .. .+.. .++ .++.
T Consensus 301 La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 301 LAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred HhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 223345689999996421 00 0000 000 0000
Q ss_pred ---------------------------------EEEcccccc----cccCceEEEE------------------------
Q 013727 215 ---------------------------------KIEAASKYS----TVDTLKQQYR------------------------ 233 (437)
Q Consensus 215 ---------------------------------~~~~~~~~~----~~~~~~~~~~------------------------ 233 (437)
.+-...... .+....+.+.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 000000000 0000000000
Q ss_pred -------------EccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHH-HhcCCceEeccCCCCHHHHHHHHHHh
Q 013727 234 -------------FVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALML-RNLGQRAIPISGHMSQSKRLGALNKF 299 (437)
Q Consensus 234 -------------~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f 299 (437)
......|...+..++....+.++||||+++..+..+++.| ...|+.+..+||+|++.+|.++++.|
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 0011123344566666667889999999999999999999 46799999999999999999999999
Q ss_pred hCC--CceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCC
Q 013727 300 KAG--ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLP 377 (437)
Q Consensus 300 ~~g--~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~ 377 (437)
+++ .++|||||+++++|+|++.+++||+||+|++++.|.||+||++|.|+++.+.+++...+......+.+.+...+.
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ 620 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLN 620 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcC
Confidence 974 699999999999999999999999999999999999999999999999987777766555556666666666553
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.1e-32 Score=273.65 Aligned_cols=308 Identities=20% Similarity=0.191 Sum_probs=212.5
Q ss_pred CChHHHHHHHHhhhcC---CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 30 TPSKIQAEAIPHALEG---KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~---~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
.|++.|.++++.+..+ +++++.|+||||||.+|+.++...+. .+.++||++|+++|+.|+.+.+++..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~---------~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA---------QGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 5899999999999874 78999999999999999887776664 46689999999999999999998754
Q ss_pred cCCCcEEEEEEcCCChHHHHH---H-hCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccccc------HH
Q 013727 107 SGISLRCAVLVGGVDMMQQTL---A-LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDF------EK 176 (437)
Q Consensus 107 ~~~~~~~~~~~g~~~~~~~~~---~-~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~------~~ 176 (437)
+..+..++|+.+...... . ....++|+|+|++.+. ..+.++++||+||+|.....+. ..
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 467888898877644332 2 2345899999998763 2577899999999997543211 12
Q ss_pred HHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCC-------ChHHHHHHHHH
Q 013727 177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-------YKDCYLVYILT 249 (437)
Q Consensus 177 ~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~ 249 (437)
.+. +........+++++|||++.+.-... ..+....+...................... .-...+...+.
T Consensus 284 ~va-~~ra~~~~~~~il~SATps~~s~~~~--~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~ 360 (679)
T PRK05580 284 DLA-VVRAKLENIPVVLGSATPSLESLANA--QQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIK 360 (679)
T ss_pred HHH-HHHhhccCCCEEEEcCCCCHHHHHHH--hccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHH
Confidence 222 22333456789999999875433332 222333332222211111111111111110 01122222222
Q ss_pred h-c-CCCcEEEEecchH------------------------------------------------------------HHH
Q 013727 250 E-V-SASSTMVFTRTCD------------------------------------------------------------ATR 267 (437)
Q Consensus 250 ~-~-~~~~~iVf~~s~~------------------------------------------------------------~~~ 267 (437)
+ . .+.++|||+|.+. .++
T Consensus 361 ~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e 440 (679)
T PRK05580 361 QRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTE 440 (679)
T ss_pred HHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHH
Confidence 2 2 4557888766421 356
Q ss_pred HHHHHHHhc--CCceEeccCCCC--HHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEe--cCCCCh-------
Q 013727 268 LLALMLRNL--GQRAIPISGHMS--QSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY--DIPTNS------- 334 (437)
Q Consensus 268 ~l~~~l~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~--~~p~s~------- 334 (437)
.+++.|++. +.++..+|+++. ..+++++++.|++|+.+|||+|+++++|+|+|++++|+.+ |.+.+.
T Consensus 441 ~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~E 520 (679)
T PRK05580 441 RLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASE 520 (679)
T ss_pred HHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHH
Confidence 777788776 678889999986 4678999999999999999999999999999999998655 444333
Q ss_pred ---hhHHHHhhhcccCCCCceEEEEEccc
Q 013727 335 ---KDYIHRVGRTARAGRTGVAISLVNQY 360 (437)
Q Consensus 335 ---~~~~Q~~GR~~R~g~~g~~i~~~~~~ 360 (437)
..|+|++||+||.+..|.++......
T Consensus 521 r~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 521 RTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred HHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 56899999999999999998655433
No 83
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=4.6e-33 Score=265.71 Aligned_cols=290 Identities=22% Similarity=0.263 Sum_probs=203.1
Q ss_pred CChHHHHHHHHhhhc----CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 30 TPSKIQAEAIPHALE----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
.|+++|.+++.++.+ .+..++++|||+|||.+++..+.. ....+|||||+++|+.||++.+..+
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~------------~~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE------------LKRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH------------hcCCEEEEECcHHHHHHHHHHHHHh
Confidence 599999999999998 899999999999999986554433 2223999999999999999877776
Q ss_pred hcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhC
Q 013727 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~ 185 (437)
.... ..+..+.|+.... .. ..|.|+|.+++.... ....+..+.+++||+|||||+....+......+....
T Consensus 104 ~~~~-~~~g~~~~~~~~~------~~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~ 174 (442)
T COG1061 104 LLLN-DEIGIYGGGEKEL------EP-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAY 174 (442)
T ss_pred cCCc-cccceecCceecc------CC-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHHHHHHhhhccc
Confidence 5331 1233333332211 11 469999999887642 1111344579999999999987766655544443322
Q ss_pred CccceEEEEeecCchHH----HHHHHHhcCCCcEEEccccccc----ccCceEEEEEcc---------------------
Q 013727 186 PRMRQTYLFSATMTKKV----KKLQRACLKNPVKIEAASKYST----VDTLKQQYRFVP--------------------- 236 (437)
Q Consensus 186 ~~~~~~i~~SAT~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--------------------- 236 (437)
+ .+++|||+.... ..+... ++ +..+........ ..........+.
T Consensus 175 ~----~LGLTATp~R~D~~~~~~l~~~-~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~ 248 (442)
T COG1061 175 P----RLGLTATPEREDGGRIGDLFDL-IG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLR 248 (442)
T ss_pred c----eeeeccCceeecCCchhHHHHh-cC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhh
Confidence 2 899999976432 111111 11 222222211000 000000001110
Q ss_pred -----------------CCChHHHHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHH
Q 013727 237 -----------------AKYKDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 298 (437)
Q Consensus 237 -----------------~~~~~~~~~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 298 (437)
...+...+..++... .+.+++|||.+..++..++..+...++ +..+.+..+..+|..+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~ 327 (442)
T COG1061 249 ARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILER 327 (442)
T ss_pred hhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHH
Confidence 011112222233333 477999999999999999999998877 8899999999999999999
Q ss_pred hhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccC
Q 013727 299 FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARA 347 (437)
Q Consensus 299 f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 347 (437)
|+.|..++||++.++.+|+|+|+++++|...+..|...|+||+||..|.
T Consensus 328 fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 328 FRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999999999999999999993
No 84
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=6.5e-32 Score=269.48 Aligned_cols=331 Identities=22% Similarity=0.213 Sum_probs=256.8
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC------CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhc
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG------KDLIGLAQTGSGKTGAFALPILQALLEIAENQ 77 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~ 77 (437)
++....|.--+-+++..+.-..++| .-|+-|..|+..+... .|-|+||+.|-|||.+++-+++..+.
T Consensus 569 R~~~~G~af~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~------ 641 (1139)
T COG1197 569 RQAKKGFAFPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM------ 641 (1139)
T ss_pred HhhccCCCCCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc------
Confidence 3344456555555566666677999 5999999999999853 48899999999999999988888877
Q ss_pred CCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhC----CCCcEEEECchHHHHHHhcCCCC
Q 013727 78 RTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALG----KRPHIVVATPGRLMDHLTNTKGF 153 (437)
Q Consensus 78 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~iiv~Tp~~l~~~l~~~~~~ 153 (437)
.+.+|.|+|||--||+|+++.|+.-..++++++..++-=.+..++...+. ...||||||.- ++. +.+
T Consensus 642 ---~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~--kdv 712 (1139)
T COG1197 642 ---DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLS--KDV 712 (1139)
T ss_pred ---CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhC--CCc
Confidence 78899999999999999999999998999999999887776666554442 36899999943 333 346
Q ss_pred CCCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEE
Q 013727 154 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYR 233 (437)
Q Consensus 154 ~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (437)
.+.+++++||||-|++.- .-++-+..+..+..++-+|||+.+..-++....+.+-..+....... ... ..
T Consensus 713 ~FkdLGLlIIDEEqRFGV-----k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R----~pV-~T 782 (1139)
T COG1197 713 KFKDLGLLIIDEEQRFGV-----KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR----LPV-KT 782 (1139)
T ss_pred EEecCCeEEEechhhcCc-----cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC----cce-EE
Confidence 789999999999998533 33444455556667999999999887777777777765554433221 111 11
Q ss_pred EccCCChHHHHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHhcC--CceEeccCCCCHHHHHHHHHHhhCCCceEEEEc
Q 013727 234 FVPAKYKDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLG--QRAIPISGHMSQSKRLGALNKFKAGECNILICT 310 (437)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T 310 (437)
++.+......-..++.+. .++++-..+|.++..+.+++.|+.+- .++.+.||.|+..+-++++..|-+|+++|||||
T Consensus 783 ~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T 862 (1139)
T COG1197 783 FVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT 862 (1139)
T ss_pred EEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 222222222222233333 67888888999999999999999873 368889999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCEEEEecCC-CChhhHHHHhhhcccCCCCceEEEEEccc
Q 013727 311 DVASRGLDIPSVDMVINYDIP-TNSKDYIHRVGRTARAGRTGVAISLVNQY 360 (437)
Q Consensus 311 ~~~~~Gid~~~~~~Vi~~~~p-~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~ 360 (437)
.+++.|+|+|+++++|..+.. ...+++.|..||+||..+.+.|+.++.+.
T Consensus 863 TIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 863 TIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred eeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 999999999999988765543 67899999999999999999999999764
No 85
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=3.6e-32 Score=235.79 Aligned_cols=202 Identities=51% Similarity=0.783 Sum_probs=182.2
Q ss_pred ccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 013727 10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS 89 (437)
Q Consensus 10 f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~ 89 (437)
|+++++++.+.+.|..+|+..|+++|.++++.+.+++++++.+|||+|||++|++|++..+..... ..+++++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~----~~~~~viii~ 76 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK----KDGPQALILA 76 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc----cCCceEEEEc
Confidence 789999999999999999999999999999999999999999999999999999999998876521 1567899999
Q ss_pred CcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccc
Q 013727 90 PTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL 169 (437)
Q Consensus 90 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~ 169 (437)
|+++|+.|+...++.+....++.+..++|+.........+..+++|+|+||+.|.+.+.+.. +.+.+++++|+||+|++
T Consensus 77 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~l~~lIvDE~h~~ 155 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK-LDLSKVKYLVLDEADRM 155 (203)
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-CChhhCCEEEEeChHHh
Confidence 99999999999999998877889999999988877666666689999999999999887655 67889999999999999
Q ss_pred cccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEE
Q 013727 170 LNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 216 (437)
Q Consensus 170 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 216 (437)
.+.++...+..++..++..+|++++|||+++.+..+...++.+|..+
T Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 156 LDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 88889999999999999899999999999999999988888887654
No 86
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=4.4e-31 Score=265.96 Aligned_cols=310 Identities=21% Similarity=0.203 Sum_probs=202.6
Q ss_pred CCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcC
Q 013727 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (437)
Q Consensus 29 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 108 (437)
.+|+|+|..+.........+++.+|||+|||.+++.++.. +.... ...+++|..||+++++|+++++.++...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~~------~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQG------LADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHhC------CCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 3799999988654444567899999999999998766553 33221 3457999999999999999998764332
Q ss_pred C--CcEEEEEEcCCChHH-----------------------HHHH-hCC---CCcEEEECchHHHHHHhcCCCCCCCCc-
Q 013727 109 I--SLRCAVLVGGVDMMQ-----------------------QTLA-LGK---RPHIVVATPGRLMDHLTNTKGFSLGTL- 158 (437)
Q Consensus 109 ~--~~~~~~~~g~~~~~~-----------------------~~~~-~~~---~~~iiv~Tp~~l~~~l~~~~~~~~~~~- 158 (437)
. ...+.+.+|...... ++.. ..+ -.+|+|||+++++......+...+..+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 1 245666666543211 0111 001 268999999998765544322222323
Q ss_pred ---cEEEEcccccccccccHHHHHHHHHhCC-ccceEEEEeecCchHHHH-HHHHhcCC-Cc-------EEEccc----c
Q 013727 159 ---KYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKKVKK-LQRACLKN-PV-------KIEAAS----K 221 (437)
Q Consensus 159 ---~~vViDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~-~~~~~~~~-~~-------~~~~~~----~ 221 (437)
++|||||+|.+ +......+..++..+. ....+|+||||+|..... +...+... +. .+.... .
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 47999999954 5444445555555432 345699999999987654 33332211 00 000000 0
Q ss_pred cc----cc--cCceEEEE--Ec--cC-CChHHHHHHHHHh-cCCCcEEEEecchHHHHHHHHHHHhcC---CceEeccCC
Q 013727 222 YS----TV--DTLKQQYR--FV--PA-KYKDCYLVYILTE-VSASSTMVFTRTCDATRLLALMLRNLG---QRAIPISGH 286 (437)
Q Consensus 222 ~~----~~--~~~~~~~~--~~--~~-~~~~~~~~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~~---~~~~~~~~~ 286 (437)
.. .. ......+. .. .. ......+..++.. ..+++++|||||++.|+.+++.|++.+ ..+..+||.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 00 00 00011111 11 11 1122333444443 356789999999999999999999765 579999999
Q ss_pred CCHHHH----HHHHHHh-hCCC---ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCC
Q 013727 287 MSQSKR----LGALNKF-KAGE---CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR 349 (437)
Q Consensus 287 ~~~~~r----~~~~~~f-~~g~---~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~ 349 (437)
++..+| .++++.| ++|+ ..|||||+++++|+|+ +++++|....| .+.++||+||++|.+.
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999 4567788 5565 4799999999999999 68999988777 7899999999999875
No 87
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.1e-31 Score=271.07 Aligned_cols=302 Identities=21% Similarity=0.293 Sum_probs=211.0
Q ss_pred HHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH-hhcCCCcEE
Q 013727 35 QAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGISLRC 113 (437)
Q Consensus 35 Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~ 113 (437)
..+++..+.+++.++++|+||||||+. +|.+.. ... ......+++.-|.|--+..++..+.. ++...+-.+
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~ll--e~~----~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~V 143 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTTQ--LPKICL--ELG----RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKV 143 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHH--HcC----CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEE
Confidence 356677776778899999999999984 453322 111 01234667778998877777766544 433333333
Q ss_pred EEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccc-cccccccHHH-HHHHHHhCCccceE
Q 013727 114 AVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD-RLLNDDFEKS-LDEILNVIPRMRQT 191 (437)
Q Consensus 114 ~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h-~~~~~~~~~~-~~~i~~~~~~~~~~ 191 (437)
+......+ .....+.|+|+|+|.|++.+..+. .+..+++|||||+| ++++.++... +..++... +..++
T Consensus 144 GY~vR~~~------~~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKl 214 (1283)
T TIGR01967 144 GYKVRFHD------QVSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKI 214 (1283)
T ss_pred eeEEcCCc------ccCCCceeeeccccHHHHHhhhCc--ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeE
Confidence 32222111 123467899999999999887654 48899999999999 5888877754 56665444 46789
Q ss_pred EEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCC------ChHHHHHHHHH---hcCCCcEEEEecc
Q 013727 192 YLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK------YKDCYLVYILT---EVSASSTMVFTRT 262 (437)
Q Consensus 192 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~---~~~~~~~iVf~~s 262 (437)
|+||||+.. ..+...+...|. +.+..... .+...|...... .....+...+. ....+.+|||+++
T Consensus 215 IlmSATld~--~~fa~~F~~apv-I~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg 288 (1283)
T TIGR01967 215 IITSATIDP--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPG 288 (1283)
T ss_pred EEEeCCcCH--HHHHHHhcCCCE-EEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCC
Confidence 999999974 567776665554 33332211 222333332211 11122222222 2355789999999
Q ss_pred hHHHHHHHHHHHhcCC---ceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCC--------
Q 013727 263 CDATRLLALMLRNLGQ---RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP-------- 331 (437)
Q Consensus 263 ~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p-------- 331 (437)
..+++.+++.|+..+. .+..+||++++.+|.+++..+ +..+|||||+++++|+|+|++++||+++.+
T Consensus 289 ~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~ 366 (1283)
T TIGR01967 289 EREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYR 366 (1283)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccc
Confidence 9999999999997643 478899999999999986554 346999999999999999999999998843
Q ss_pred ----------CChhhHHHHhhhcccCCCCceEEEEEccccH
Q 013727 332 ----------TNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (437)
Q Consensus 332 ----------~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 362 (437)
.|.++|.||.||+||.+ .|.|+.+++..+.
T Consensus 367 ~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 367 TKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred cCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 36689999999999997 8999999986654
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.6e-31 Score=253.00 Aligned_cols=286 Identities=21% Similarity=0.217 Sum_probs=191.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHH--
Q 013727 49 IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT-- 126 (437)
Q Consensus 49 lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-- 126 (437)
|+.||||||||.+|+..+...+. .+.++||++|+++|+.|+.+.|++.. +..+..++++.+..+..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~---------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~ 68 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA---------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQA 68 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHH
Confidence 57899999999998766554443 56689999999999999999998754 45677888877654432
Q ss_pred -HHh-CCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccc-----c-HHHHHHHHHhCCccceEEEEeecC
Q 013727 127 -LAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-----F-EKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 127 -~~~-~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~-----~-~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
... ...++|||+|+..+. ..+.++++|||||+|.....+ + ...+...... ....+++++|||+
T Consensus 69 ~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATP 139 (505)
T TIGR00595 69 WRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATP 139 (505)
T ss_pred HHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCC
Confidence 222 345799999998763 247789999999999765321 1 1223333333 3467799999997
Q ss_pred chHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCC----hHHHHHHHHHh-c-CCCcEEEEecchHH-------
Q 013727 199 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY----KDCYLVYILTE-V-SASSTMVFTRTCDA------- 265 (437)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~-~-~~~~~iVf~~s~~~------- 265 (437)
+.+ .+.....+....+...............+....... -...+...+.+ . .++++|||+|++..
T Consensus 140 sle--s~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~ 217 (505)
T TIGR00595 140 SLE--SYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCR 217 (505)
T ss_pred CHH--HHHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhh
Confidence 744 333322222222222211111111111111111111 11223333332 2 45789999776543
Q ss_pred -----------------------------------------------------HHHHHHHHHhc--CCceEeccCCCCHH
Q 013727 266 -----------------------------------------------------TRLLALMLRNL--GQRAIPISGHMSQS 290 (437)
Q Consensus 266 -----------------------------------------------------~~~l~~~l~~~--~~~~~~~~~~~~~~ 290 (437)
.+++.+.|++. +.++..+|++++..
T Consensus 218 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~ 297 (505)
T TIGR00595 218 SCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSR 297 (505)
T ss_pred hCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccC
Confidence 47788888876 66888999998876
Q ss_pred HH--HHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEE--EecCCCC----------hhhHHHHhhhcccCCCCceEEEE
Q 013727 291 KR--LGALNKFKAGECNILICTDVASRGLDIPSVDMVI--NYDIPTN----------SKDYIHRVGRTARAGRTGVAISL 356 (437)
Q Consensus 291 ~r--~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi--~~~~p~s----------~~~~~Q~~GR~~R~g~~g~~i~~ 356 (437)
.+ +.+++.|++|+.+|||+|+++++|+|+|++++|+ ++|...+ ...|+|++||+||.+..|.++..
T Consensus 298 ~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiq 377 (505)
T TIGR00595 298 KGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQ 377 (505)
T ss_pred ccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEE
Confidence 65 8999999999999999999999999999999885 4554322 35689999999999999988854
Q ss_pred E
Q 013727 357 V 357 (437)
Q Consensus 357 ~ 357 (437)
.
T Consensus 378 t 378 (505)
T TIGR00595 378 T 378 (505)
T ss_pred e
Confidence 4
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.1e-30 Score=257.85 Aligned_cols=320 Identities=18% Similarity=0.197 Sum_probs=224.8
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
..|. .|++.|.-.--.+..| -+..++||+|||++|.+|++..++ .+..++|++||++||.|.++.+..
T Consensus 78 ~lg~-~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al---------~G~~V~VvTpn~yLA~qd~e~m~~ 145 (896)
T PRK13104 78 TLGL-RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAI---------SGRGVHIVTVNDYLAKRDSQWMKP 145 (896)
T ss_pred HcCC-CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHh---------cCCCEEEEcCCHHHHHHHHHHHHH
Confidence 3566 5777776655555544 689999999999999999997766 445589999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCCCCCC-----CCccEEEEccccccccc------
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKGFSL-----GTLKYLVLDEADRLLND------ 172 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~~~~~-----~~~~~vViDE~h~~~~~------ 172 (437)
+...+++.+.+++|+.+...+...+ .++|+|+||++| .+++..+..+++ ..+.++|+||+|.++=+
T Consensus 146 l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPL 223 (896)
T PRK13104 146 IYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPL 223 (896)
T ss_pred HhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCce
Confidence 9999999999999998876665544 589999999999 898887644444 58999999999965321
Q ss_pred ----------ccHHHHHHHHHhCCcc--------------ceEEE-----------------------------------
Q 013727 173 ----------DFEKSLDEILNVIPRM--------------RQTYL----------------------------------- 193 (437)
Q Consensus 173 ----------~~~~~~~~i~~~~~~~--------------~~~i~----------------------------------- 193 (437)
.....+..+...+... ...+.
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~ 303 (896)
T PRK13104 224 IISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMH 303 (896)
T ss_pred eeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHH
Confidence 1111222222222111 01122
Q ss_pred --------------------------------------------------------------------------------
Q 013727 194 -------------------------------------------------------------------------------- 193 (437)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (437)
T Consensus 304 ~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLs 383 (896)
T PRK13104 304 HVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLS 383 (896)
T ss_pred HHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhc
Confidence
Q ss_pred -EeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHH--hcCCCcEEEEecchHHHHHHH
Q 013727 194 -FSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLA 270 (437)
Q Consensus 194 -~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~iVf~~s~~~~~~l~ 270 (437)
||+|.......+...+..+...+........ .-.....+.+...+...+...+. ...+.|+||||+|++.++.++
T Consensus 384 GMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R--~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls 461 (896)
T PRK13104 384 GMTGTADTEAYEFQQIYNLEVVVIPTNRSMIR--KDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLS 461 (896)
T ss_pred cCCCCChhHHHHHHHHhCCCEEECCCCCCcce--ecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHH
Confidence 2222222222222222111111110000000 00011122222333333443332 337899999999999999999
Q ss_pred HHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCC----------------------------
Q 013727 271 LMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV---------------------------- 322 (437)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~---------------------------- 322 (437)
..|...|+++.++|+.+.+.++..+.+.|+.| .|+|||+++++|+|+.=-
T Consensus 462 ~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (896)
T PRK13104 462 QLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQK 539 (896)
T ss_pred HHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhh
Confidence 99999999999999999999999999999999 499999999999998511
Q ss_pred ----------CEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccH
Q 013727 323 ----------DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (437)
Q Consensus 323 ----------~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 362 (437)
=+||-...+.|..-=.|..||+||.|.+|.+..|++-.|.
T Consensus 540 ~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 540 RHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1688888888888889999999999999999988876553
No 90
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5.6e-31 Score=259.41 Aligned_cols=343 Identities=21% Similarity=0.284 Sum_probs=255.0
Q ss_pred CCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCC--CCCeEEEEEcC
Q 013727 14 GLRDELVEACENVGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRT--VPAFFACVLSP 90 (437)
Q Consensus 14 ~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~--~~~~~~lvl~P 90 (437)
.+|.|-..++ .|..++.++|..+.++++.+ .++++|||||+|||.++++.|++.+..+...... ....+++|++|
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 3555555444 35667999999999999987 5899999999999999999999988776543322 34668999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCC-CC-CCCCccEEEEccccc
Q 013727 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK-GF-SLGTLKYLVLDEADR 168 (437)
Q Consensus 91 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~-~~-~~~~~~~vViDE~h~ 168 (437)
.++|+..|...|.+....+++.|.-.+|+.....+.. .+.+|+||||+.. +.+.+.. .. ..+.++++|+||.|
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIH- 447 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIH- 447 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhh-
Confidence 9999999999999988899999999999876544332 3578999999987 3344321 11 24468899999999
Q ss_pred ccccccHHHHHHHHHhC-------CccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChH
Q 013727 169 LLNDDFEKSLDEILNVI-------PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241 (437)
Q Consensus 169 ~~~~~~~~~~~~i~~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (437)
|+.++.++.++.+.... ...+..+++|||+|+..+ .......++.-+........+-.+.|.++-+......
T Consensus 448 LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~ 526 (1674)
T KOG0951|consen 448 LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPL 526 (1674)
T ss_pred hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh-hHHHhccCcccccccCcccCcCCccceEeccccCCch
Confidence 66667777776665433 235679999999998643 3332223333333333334445667777766664422
Q ss_pred --------HHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhc-------------------------------------
Q 013727 242 --------CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL------------------------------------- 276 (437)
Q Consensus 242 --------~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~------------------------------------- 276 (437)
.....+++..+.+++|||+.+++++.+.|..++..
T Consensus 527 ~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLL 606 (1674)
T KOG0951|consen 527 KRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLL 606 (1674)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHh
Confidence 33445667777799999999999988888887631
Q ss_pred CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEE----ecC------CCChhhHHHHhhhccc
Q 013727 277 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YDI------PTNSKDYIHRVGRTAR 346 (437)
Q Consensus 277 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~----~~~------p~s~~~~~Q~~GR~~R 346 (437)
.+..+.+|.||+..+|..+.+.|+.|.++++|+|-++++|+|+|.-+++|- ||+ +.++.+.+|++||+||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGR 686 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCC
Confidence 345788999999999999999999999999999999999999988666663 443 3578899999999999
Q ss_pred CCCC--ceEEEEEccccHHH
Q 013727 347 AGRT--GVAISLVNQYELEW 364 (437)
Q Consensus 347 ~g~~--g~~i~~~~~~~~~~ 364 (437)
.+.+ |..+.+-...+..+
T Consensus 687 p~~D~~gegiiit~~se~qy 706 (1674)
T KOG0951|consen 687 PQYDTCGEGIIITDHSELQY 706 (1674)
T ss_pred CccCcCCceeeccCchHhhh
Confidence 8754 56666655444443
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=6.4e-30 Score=252.19 Aligned_cols=320 Identities=20% Similarity=0.190 Sum_probs=236.7
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|+ .|++.|.-..-.+..| -+..+.||+|||+++.+|++...+ .+..+-|++||..||.|.++.+..
T Consensus 77 ~lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL---------~G~~V~IvTpn~yLA~rd~e~~~~ 144 (830)
T PRK12904 77 VLGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNAL---------TGKGVHVVTVNDYLAKRDAEWMGP 144 (830)
T ss_pred HhCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHH
Confidence 3687 6999998888777766 499999999999999999964444 344577999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCCC-----CCCCCccEEEEccccccccc------
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKG-----FSLGTLKYLVLDEADRLLND------ 172 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~~-----~~~~~~~~vViDE~h~~~~~------ 172 (437)
+...+++++.++.|+.+...+...+ .++|+|+||+.| .+++..+.. ...+.+.++|+||+|.++=.
T Consensus 145 l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpL 222 (830)
T PRK12904 145 LYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPL 222 (830)
T ss_pred HHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCce
Confidence 9999999999999998887766665 489999999999 888876532 23677899999999964211
Q ss_pred ----------ccHHHHHHHHHhCCcc------------------------------------------------------
Q 013727 173 ----------DFEKSLDEILNVIPRM------------------------------------------------------ 188 (437)
Q Consensus 173 ----------~~~~~~~~i~~~~~~~------------------------------------------------------ 188 (437)
.....+..+...+...
T Consensus 223 iiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~ 302 (830)
T PRK12904 223 IISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFK 302 (830)
T ss_pred eeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHh
Confidence 0111122222211100
Q ss_pred ---------------------------------------------------------------ceEEEEeecCchHHHHH
Q 013727 189 ---------------------------------------------------------------RQTYLFSATMTKKVKKL 205 (437)
Q Consensus 189 ---------------------------------------------------------------~~~i~~SAT~~~~~~~~ 205 (437)
..+.+||+|.......+
T Consensus 303 ~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~ 382 (830)
T PRK12904 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382 (830)
T ss_pred cCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHH
Confidence 12345566655554444
Q ss_pred HHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHh--cCCCcEEEEecchHHHHHHHHHHHhcCCceEec
Q 013727 206 QRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 283 (437)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~ 283 (437)
...+..+...+.........+. ....+.+...+...+...+.. ..+.|+||||+|++.++.+++.|...|+++..+
T Consensus 383 ~~iY~l~vv~IPtnkp~~r~d~--~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vL 460 (830)
T PRK12904 383 REIYNLDVVVIPTNRPMIRIDH--PDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVL 460 (830)
T ss_pred HHHhCCCEEEcCCCCCeeeeeC--CCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEec
Confidence 4444333322221111111111 112333444556666666654 577899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCC--------------------------------------CEE
Q 013727 284 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV--------------------------------------DMV 325 (437)
Q Consensus 284 ~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~--------------------------------------~~V 325 (437)
|+. +.+|+..+..|+.+...|+|||+++++|+|++-- =+|
T Consensus 461 nak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhV 538 (830)
T PRK12904 461 NAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHV 538 (830)
T ss_pred cCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEE
Confidence 995 7899999999999999999999999999999642 178
Q ss_pred EEecCCCChhhHHHHhhhcccCCCCceEEEEEccccH
Q 013727 326 INYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (437)
Q Consensus 326 i~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 362 (437)
|....|.|..--.|..||+||.|.+|.+..+++-.|.
T Consensus 539 igTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred EecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 8888899999999999999999999999988876553
No 92
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=3.2e-30 Score=253.30 Aligned_cols=320 Identities=18% Similarity=0.199 Sum_probs=228.0
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|+ .|++.|.-..-.+..|+ +..+.||+|||+++.+|++...+ .+..+.+++|+..||.|-++.+..
T Consensus 76 ~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al---------~G~~v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 76 VLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL---------TGKGVHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred HhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH---------cCCCeEEEeccHHHHHhhHHHHHH
Confidence 3687 69999988888777775 99999999999999998887777 677899999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCCC-----CCCCCccEEEEccccccccc------
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKG-----FSLGTLKYLVLDEADRLLND------ 172 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~~-----~~~~~~~~vViDE~h~~~~~------ 172 (437)
+...+|+++.++.++.+.......+ .+||+++|...| .++|..+-. .-...+.+.||||+|.++=.
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPL 221 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPL 221 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCce
Confidence 9999999999999887776554444 589999998776 334433211 12456889999999953210
Q ss_pred ----------ccHHHHHHHHHhCCcc------------------------------------------------------
Q 013727 173 ----------DFEKSLDEILNVIPRM------------------------------------------------------ 188 (437)
Q Consensus 173 ----------~~~~~~~~i~~~~~~~------------------------------------------------------ 188 (437)
.....+..+...+...
T Consensus 222 iisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i 301 (796)
T PRK12906 222 IISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHI 301 (796)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHH
Confidence 0111111111111100
Q ss_pred --------------------------------------------------------------------------ceEEEE
Q 013727 189 --------------------------------------------------------------------------RQTYLF 194 (437)
Q Consensus 189 --------------------------------------------------------------------------~~~i~~ 194 (437)
..+.+|
T Consensus 302 ~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~Gm 381 (796)
T PRK12906 302 DQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGM 381 (796)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhcc
Confidence 012334
Q ss_pred eecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHh--cCCCcEEEEecchHHHHHHHHH
Q 013727 195 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALM 272 (437)
Q Consensus 195 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~iVf~~s~~~~~~l~~~ 272 (437)
|+|.......+...+.-+... ++........-.....+.+...+...+...+.. ..+.|+||||+|+..++.++..
T Consensus 382 TGTa~~e~~Ef~~iY~l~vv~--IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 382 TGTAKTEEEEFREIYNMEVIT--IPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred CCCCHHHHHHHHHHhCCCEEE--cCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 444433333333322222111 111110000000112222333344555555543 3789999999999999999999
Q ss_pred HHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCC---CCC-----EEEEecCCCChhhHHHHhhhc
Q 013727 273 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP---SVD-----MVINYDIPTNSKDYIHRVGRT 344 (437)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~---~~~-----~Vi~~~~p~s~~~~~Q~~GR~ 344 (437)
|.+.++++..+|+++...++..+...++.|. |+|||+++++|+|++ ++. +||+++.|.|...|.|+.||+
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 9999999999999998888888877777775 999999999999994 788 999999999999999999999
Q ss_pred ccCCCCceEEEEEccccH
Q 013727 345 ARAGRTGVAISLVNQYEL 362 (437)
Q Consensus 345 ~R~g~~g~~i~~~~~~~~ 362 (437)
||.|.+|.+..+++..|.
T Consensus 538 GRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 538 GRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred ccCCCCcceEEEEeccch
Confidence 999999999999987754
No 93
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=8.4e-30 Score=251.03 Aligned_cols=149 Identities=19% Similarity=0.244 Sum_probs=128.0
Q ss_pred cccCCCHHHHHHHH-----hCCCCCC---hHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 013727 11 KELGLRDELVEACE-----NVGWKTP---SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (437)
Q Consensus 11 ~~~~l~~~~~~~l~-----~~g~~~~---~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 82 (437)
+.+++..++.+.+. .+||..| +|+|.++++.+..++++++.++||+|||++|++|++..++. +
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------G 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------c
Confidence 56678888887776 6799988 99999999999999999999999999999999999987763 2
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCCCCCCC-----
Q 013727 83 FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKGFSLG----- 156 (437)
Q Consensus 83 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~~~~~~----- 156 (437)
..++|++||++||.|.++.+..+...+++++.++.||.+...+...+ +++|+|+||++| .+++.... +.++
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~-~~~~~~~~v 212 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNS-IATRKEEQV 212 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCC-CCcCHHHhh
Confidence 23889999999999999999999998999999999999988776555 489999999999 99887653 3333
Q ss_pred --CccEEEEcccccccc
Q 013727 157 --TLKYLVLDEADRLLN 171 (437)
Q Consensus 157 --~~~~vViDE~h~~~~ 171 (437)
.+.++|+||||.|+-
T Consensus 213 qr~~~~~IIDEADsmLi 229 (970)
T PRK12899 213 GRGFYFAIIDEVDSILI 229 (970)
T ss_pred cccccEEEEechhhhhh
Confidence 568999999997643
No 94
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=244.32 Aligned_cols=323 Identities=20% Similarity=0.217 Sum_probs=237.7
Q ss_pred HHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 013727 23 CENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (437)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 102 (437)
...++| .|-.+|++|+-.+..|.+++|.|+|.+|||+++-.++...-. .+.+++|..|-++|.+|-++.|
T Consensus 291 a~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~---------h~TR~iYTSPIKALSNQKfRDF 360 (1248)
T KOG0947|consen 291 ALIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK---------HMTRTIYTSPIKALSNQKFRDF 360 (1248)
T ss_pred HhhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh---------hccceEecchhhhhccchHHHH
Confidence 346788 699999999999999999999999999999987665544333 6778999999999999999999
Q ss_pred HHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHH
Q 013727 103 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (437)
Q Consensus 103 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~ 182 (437)
+.-....+ +++|+.. +...+.++|+|.+.|..++.++.. -.+++..||+||+|.+.+...+-.|++++
T Consensus 361 k~tF~Dvg----LlTGDvq-------inPeAsCLIMTTEILRsMLYrgad-liRDvE~VIFDEVHYiND~eRGvVWEEVi 428 (1248)
T KOG0947|consen 361 KETFGDVG----LLTGDVQ-------INPEASCLIMTTEILRSMLYRGAD-LIRDVEFVIFDEVHYINDVERGVVWEEVI 428 (1248)
T ss_pred HHhccccc----eeeccee-------eCCCcceEeehHHHHHHHHhcccc-hhhccceEEEeeeeecccccccccceeee
Confidence 87654433 7788753 344578999999999999988765 47889999999999999999999999999
Q ss_pred HhCCccceEEEEeecCchHHHHHHHHhcC---CCcEEEcccccccccCceEEE---------------------------
Q 013727 183 NVIPRMRQTYLFSATMTKKVKKLQRACLK---NPVKIEAASKYSTVDTLKQQY--------------------------- 232 (437)
Q Consensus 183 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--------------------------- 232 (437)
-++|++.++|++|||.|+..+ ++.|... ..+.+..... .+-.+.+.+
T Consensus 429 IMlP~HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~k--RPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~ 505 (1248)
T KOG0947|consen 429 IMLPRHVNFILLSATVPNTLE-FADWIGRTKQKTIYVISTSK--RPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDS 505 (1248)
T ss_pred eeccccceEEEEeccCCChHH-HHHHhhhccCceEEEEecCC--CccceEEEEEeccceehhhcccchhhhhcchhhhhh
Confidence 999999999999999998753 3444321 1111110000 000000000
Q ss_pred ------------------------------EEc------cC--CCh---HHHHHHHHHhcCCCcEEEEecchHHHHHHHH
Q 013727 233 ------------------------------RFV------PA--KYK---DCYLVYILTEVSASSTMVFTRTCDATRLLAL 271 (437)
Q Consensus 233 ------------------------------~~~------~~--~~~---~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~ 271 (437)
... +. ..+ -..+...+....--|+||||.|++.|++.++
T Consensus 506 ~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~ 585 (1248)
T KOG0947|consen 506 LKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYAD 585 (1248)
T ss_pred hcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHH
Confidence 000 00 001 1122233334455789999999999999999
Q ss_pred HHHhc---------------------------------------CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC
Q 013727 272 MLRNL---------------------------------------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV 312 (437)
Q Consensus 272 ~l~~~---------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 312 (437)
+|... ...++++||++=+--++-+.-.|..|-++||+||.+
T Consensus 586 ~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATET 665 (1248)
T KOG0947|consen 586 YLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATET 665 (1248)
T ss_pred HHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhh
Confidence 99653 123678999999988999999999999999999999
Q ss_pred CCCCCCCCCCCEEEEecC---------CCChhhHHHHhhhcccCCC--CceEEEEEccccHHHHHHHHHHh
Q 013727 313 ASRGLDIPSVDMVINYDI---------PTNSKDYIHRVGRTARAGR--TGVAISLVNQYELEWYLQIEKLI 372 (437)
Q Consensus 313 ~~~Gid~~~~~~Vi~~~~---------p~s~~~~~Q~~GR~~R~g~--~g~~i~~~~~~~~~~~~~l~~~~ 372 (437)
++.|+|+|.-.+|+. +. -..+.+|.|+.|||||.|- .|.+++++... ......+.+.+
T Consensus 666 FAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~~li 734 (1248)
T KOG0947|consen 666 FAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLKRLI 734 (1248)
T ss_pred hhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHHhhHh
Confidence 999999987666653 22 1468899999999999995 47777776543 34444455544
No 95
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=2.9e-29 Score=259.93 Aligned_cols=303 Identities=17% Similarity=0.219 Sum_probs=197.2
Q ss_pred CChHHHHHHHHhhhc-----CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 30 TPSKIQAEAIPHALE-----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~-----~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|+||.+|+..+.. .++.+++++||||||.+++. ++..+.... ...++|+++|+.+|+.|+...|..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~------~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAK------RFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcC------ccCeEEEEecHHHHHHHHHHHHHh
Confidence 589999999988763 36799999999999988544 444444332 346899999999999999999998
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcC----CCCCCCCccEEEEccccccccc--------
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT----KGFSLGTLKYLVLDEADRLLND-------- 172 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~----~~~~~~~~~~vViDE~h~~~~~-------- 172 (437)
+..........+++..... .........|+|+|.++|...+... ..+.+..+++||+||||+....
T Consensus 486 ~~~~~~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 7432221111111111111 1112335789999999987764321 1135778999999999986420
Q ss_pred -------ccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCc---------------------EEEcccc---
Q 013727 173 -------DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV---------------------KIEAASK--- 221 (437)
Q Consensus 173 -------~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~---------------------~~~~~~~--- 221 (437)
++...+..++..+. ...|+||||+...... +++.|. .+.....
T Consensus 564 ~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred hccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 12456777777653 4579999999743211 112221 1111000
Q ss_pred --ccccc---CceE---EE--EEccCCC--h--------------HHHHHHH---HHhcCCCcEEEEecchHHHHHHHHH
Q 013727 222 --YSTVD---TLKQ---QY--RFVPAKY--K--------------DCYLVYI---LTEVSASSTMVFTRTCDATRLLALM 272 (437)
Q Consensus 222 --~~~~~---~~~~---~~--~~~~~~~--~--------------~~~~~~~---l~~~~~~~~iVf~~s~~~~~~l~~~ 272 (437)
..... .+.. .+ ...+... . ...+..+ +....++++||||.++++|+.+++.
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~ 717 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRL 717 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHH
Confidence 00000 0000 00 0000000 0 0001111 2222457999999999999999988
Q ss_pred HHhc------CC---ceEeccCCCCHHHHHHHHHHhhCCCc-eEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhh
Q 013727 273 LRNL------GQ---RAIPISGHMSQSKRLGALNKFKAGEC-NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVG 342 (437)
Q Consensus 273 l~~~------~~---~~~~~~~~~~~~~r~~~~~~f~~g~~-~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~G 342 (437)
|.+. +. .+..++|+.+ ++..++++|+++.. .|+|+++++.+|+|+|.+++||+++++.|...|+|++|
T Consensus 718 L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 718 LKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHh
Confidence 7653 12 3556888875 46789999999886 69999999999999999999999999999999999999
Q ss_pred hcccCCC
Q 013727 343 RTARAGR 349 (437)
Q Consensus 343 R~~R~g~ 349 (437)
|+.|...
T Consensus 796 RgtR~~~ 802 (1123)
T PRK11448 796 RATRLCP 802 (1123)
T ss_pred hhccCCc
Confidence 9999754
No 96
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=3.4e-28 Score=210.07 Aligned_cols=304 Identities=20% Similarity=0.252 Sum_probs=217.2
Q ss_pred CChHHHHHHHHhhhc----CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 30 TPSKIQAEAIPHALE----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
++++.|+.+-..+.+ .++.+++|-||+|||.. +...++..+. .+.++.+..|....+..++.+++.-
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~--------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN--------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh--------cCCeEEEecCcccchHHHHHHHHHh
Confidence 589999999888775 47999999999999986 4445555554 7888999999999999999999876
Q ss_pred hcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhC
Q 013727 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~ 185 (437)
... ..+.+++|+.+... ...++|+|..+|++... .++++|+||+|.+--..-.....++-+..
T Consensus 168 F~~--~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~~~d~~L~~Av~~ar 230 (441)
T COG4098 168 FSN--CDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPFSDDQSLQYAVKKAR 230 (441)
T ss_pred hcc--CCeeeEecCCchhc-------cccEEEEehHHHHHHHh--------hccEEEEeccccccccCCHHHHHHHHHhh
Confidence 543 56678888866533 26799999988877443 27899999999654433333333444445
Q ss_pred CccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChH-------HHHHHHHHhc--CCCcE
Q 013727 186 PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD-------CYLVYILTEV--SASST 256 (437)
Q Consensus 186 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~--~~~~~ 256 (437)
......|.+|||++..++.-... ++...+.........+...-.+.+..+-.+. ..+...++.. .+.++
T Consensus 231 k~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~ 308 (441)
T COG4098 231 KKEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPV 308 (441)
T ss_pred cccCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcE
Confidence 55667899999999876554332 2222333333332222222334444433322 2445555543 56899
Q ss_pred EEEecchHHHHHHHHHHHh-cCC-ceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCC--C
Q 013727 257 MVFTRTCDATRLLALMLRN-LGQ-RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP--T 332 (437)
Q Consensus 257 iVf~~s~~~~~~l~~~l~~-~~~-~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p--~ 332 (437)
+||+++++..+.+++.|+. ... ..+.+|+. ...|.+.+++|++|+..+||+|.++++|+.+|++++.+.-.-. .
T Consensus 309 liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vf 386 (441)
T COG4098 309 LIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVF 386 (441)
T ss_pred EEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccc
Confidence 9999999999999999954 333 34667765 5678889999999999999999999999999999987754433 6
Q ss_pred ChhhHHHHhhhcccCCC--CceEEEEEccccHH
Q 013727 333 NSKDYIHRVGRTARAGR--TGVAISLVNQYELE 363 (437)
Q Consensus 333 s~~~~~Q~~GR~~R~g~--~g~~i~~~~~~~~~ 363 (437)
+.+.++|..||+||.-. +|.+..|.......
T Consensus 387 TesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 387 TESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred cHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 88899999999999853 47776666544433
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=8.4e-29 Score=247.24 Aligned_cols=317 Identities=19% Similarity=0.224 Sum_probs=236.3
Q ss_pred HHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 013727 23 CENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (437)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 102 (437)
....|| .|-++|++++..+-.+.+++|+||||||||.+.-.++...+. .+.+++|..|.++|.+|.++++
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~---------~~qrviYTsPIKALsNQKyrdl 182 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR---------DGQRVIYTSPIKALSNQKYRDL 182 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH---------cCCceEeccchhhhhhhHHHHH
Confidence 356888 699999999999999999999999999999998877776666 5666999999999999999888
Q ss_pred HHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHH
Q 013727 103 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (437)
Q Consensus 103 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~ 182 (437)
.......---+.+++|+.+ +..++.++|+|.+.|.+++..+. ..+..+..||+||+|.|.+...+..|+.++
T Consensus 183 ~~~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~-~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I 254 (1041)
T COG4581 183 LAKFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGS-ESLRDIEWVVFDEVHYIGDRERGVVWEEVI 254 (1041)
T ss_pred HHHhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCc-ccccccceEEEEeeeeccccccchhHHHHH
Confidence 6654332122456666643 33468899999999999888864 478999999999999999999999999999
Q ss_pred HhCCccceEEEEeecCchHHHHHHHHhc---CCCcEEEcccccccccCceEEE-------EEccCCC-------------
Q 013727 183 NVIPRMRQTYLFSATMTKKVKKLQRACL---KNPVKIEAASKYSTVDTLKQQY-------RFVPAKY------------- 239 (437)
Q Consensus 183 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~------------- 239 (437)
-.+|.+.+++++|||.++.. .+..|+. ..|..+....... ..+.+.+ ..++...
T Consensus 255 i~lP~~v~~v~LSATv~N~~-EF~~Wi~~~~~~~~~vv~t~~Rp--vPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~ 331 (1041)
T COG4581 255 ILLPDHVRFVFLSATVPNAE-EFAEWIQRVHSQPIHVVSTEHRP--VPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRS 331 (1041)
T ss_pred HhcCCCCcEEEEeCCCCCHH-HHHHHHHhccCCCeEEEeecCCC--CCeEEEEecCCceeeeecccccchhhcchhhhhh
Confidence 99999999999999998864 3344332 2233222221111 1111111 0111100
Q ss_pred ----------------------------------hHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhc---------
Q 013727 240 ----------------------------------KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--------- 276 (437)
Q Consensus 240 ----------------------------------~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~--------- 276 (437)
....+...+......++|+|+.++..|+..+..+...
T Consensus 332 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e 411 (1041)
T COG4581 332 LSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKE 411 (1041)
T ss_pred hhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHH
Confidence 1122344444456678999999999998888776521
Q ss_pred -------------------CC-------------ceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCE
Q 013727 277 -------------------GQ-------------RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 324 (437)
Q Consensus 277 -------------------~~-------------~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~ 324 (437)
+. ..+++|+++=+..+..+...|..|-.+|+.+|.+++.|+|+|.-++
T Consensus 412 ~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartv 491 (1041)
T COG4581 412 RAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTV 491 (1041)
T ss_pred HHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccce
Confidence 11 1447899999999999999999999999999999999999987666
Q ss_pred EEE----ec----CCCChhhHHHHhhhcccCCCC--ceEEEEEccc
Q 013727 325 VIN----YD----IPTNSKDYIHRVGRTARAGRT--GVAISLVNQY 360 (437)
Q Consensus 325 Vi~----~~----~p~s~~~~~Q~~GR~~R~g~~--g~~i~~~~~~ 360 (437)
|+- +| .+.++.+|.|..||+||.|-+ |.++++..+.
T Consensus 492 v~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 492 VFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred eeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 552 11 346889999999999999965 7777775443
No 98
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.6e-29 Score=236.43 Aligned_cols=310 Identities=19% Similarity=0.230 Sum_probs=237.3
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
...| .+-|+|..++.-+-.+.+++|.|.|.+|||.++-.+|...+. ...|++|..|-++|.+|-++++..
T Consensus 125 ~YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr---------~kQRVIYTSPIKALSNQKYREl~~ 194 (1041)
T KOG0948|consen 125 TYPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR---------EKQRVIYTSPIKALSNQKYRELLE 194 (1041)
T ss_pred CCCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH---------hcCeEEeeChhhhhcchhHHHHHH
Confidence 3455 589999999999999999999999999999998888777776 566899999999999999998876
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHh
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~ 184 (437)
-..+ |++.+|+... ...+..+|+|.+.|..++.++.. -+..+..||+||+|.|-+...+-.|++-+-.
T Consensus 195 EF~D----VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSE-vmrEVaWVIFDEIHYMRDkERGVVWEETIIl 262 (1041)
T KOG0948|consen 195 EFKD----VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSE-VMREVAWVIFDEIHYMRDKERGVVWEETIIL 262 (1041)
T ss_pred Hhcc----cceeecceee-------CCCCceeeeHHHHHHHHHhccch-HhheeeeEEeeeehhccccccceeeeeeEEe
Confidence 5444 3456665432 34577999999999999988765 4888999999999999999999899999999
Q ss_pred CCccceEEEEeecCchHHHHHHHHhc---CCCcEEEcccccccccCceEE---------EEEccCC--------------
Q 013727 185 IPRMRQTYLFSATMTKKVKKLQRACL---KNPVKIEAASKYSTVDTLKQQ---------YRFVPAK-------------- 238 (437)
Q Consensus 185 ~~~~~~~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-------------- 238 (437)
+|.+.+.+++|||+|+..+ ++.|.. ..|..+....... ..+.+. |..++..
T Consensus 263 lP~~vr~VFLSATiPNA~q-FAeWI~~ihkQPcHVVYTdyRP--TPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 263 LPDNVRFVFLSATIPNARQ-FAEWICHIHKQPCHVVYTDYRP--TPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred ccccceEEEEeccCCCHHH-HHHHHHHHhcCCceEEeecCCC--CcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 9999999999999998754 444433 3454443332211 122221 1222211
Q ss_pred -----------------------------ChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhc-------------
Q 013727 239 -----------------------------YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL------------- 276 (437)
Q Consensus 239 -----------------------------~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~------------- 276 (437)
.....+...+......++|||+.|++.|+.+|-.+.++
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~ 419 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVET 419 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHH
Confidence 11223444444556678999999999999999887653
Q ss_pred --------------------------CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecC
Q 013727 277 --------------------------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI 330 (437)
Q Consensus 277 --------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~ 330 (437)
...+.++|+|+=+--++-+.-.|.+|-+++|.||.+++.|+|+|.-++|+-.-.
T Consensus 420 iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~r 499 (1041)
T KOG0948|consen 420 IFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVR 499 (1041)
T ss_pred HHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeecc
Confidence 123667999999988889999999999999999999999999988666664221
Q ss_pred C--------CChhhHHHHhhhcccCCCC--ceEEEEEcc
Q 013727 331 P--------TNSKDYIHRVGRTARAGRT--GVAISLVNQ 359 (437)
Q Consensus 331 p--------~s~~~~~Q~~GR~~R~g~~--g~~i~~~~~ 359 (437)
- .|-.+|+|+.|||||.|.+ |.||++++.
T Consensus 500 KfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 500 KFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred ccCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 1 3567999999999999964 888888863
No 99
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.5e-27 Score=232.30 Aligned_cols=320 Identities=18% Similarity=0.161 Sum_probs=220.4
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|+ .|++.|.-.--.+. +.-+..++||+|||+++.+|++...+ .+..+.|++|+..||.|.++.+..
T Consensus 78 ~lgm-~~ydVQliGgl~L~--~G~IaEm~TGEGKTL~a~lp~~l~al---------~g~~VhIvT~ndyLA~RD~e~m~~ 145 (908)
T PRK13107 78 VFEM-RHFDVQLLGGMVLD--SNRIAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVITVNDYLARRDAENNRP 145 (908)
T ss_pred HhCC-CcCchHHhcchHhc--CCccccccCCCCchHHHHHHHHHHHh---------cCCCEEEEeCCHHHHHHHHHHHHH
Confidence 3566 57777765544444 44689999999999999999987766 455599999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCCCCCC-----CCccEEEEcccccccccc-----
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKGFSL-----GTLKYLVLDEADRLLNDD----- 173 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~~~~~-----~~~~~vViDE~h~~~~~~----- 173 (437)
+...+++++.++.++........ ...++|+++||+.| .+++..+-.+.. ..+.++|+||+|.++-..
T Consensus 146 l~~~lGlsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPL 223 (908)
T PRK13107 146 LFEFLGLTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPL 223 (908)
T ss_pred HHHhcCCeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCce
Confidence 99999999999999887643322 23689999999999 888876522333 778999999999653311
Q ss_pred -----------cHHHHHHHHHhCCc-------------------cc----------------------------------
Q 013727 174 -----------FEKSLDEILNVIPR-------------------MR---------------------------------- 189 (437)
Q Consensus 174 -----------~~~~~~~i~~~~~~-------------------~~---------------------------------- 189 (437)
....+..+...+.. ..
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~ 303 (908)
T PRK13107 224 IISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAAN 303 (908)
T ss_pred eecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchh
Confidence 11111111111100 00
Q ss_pred --------------------------------------------------------------------------------
Q 013727 190 -------------------------------------------------------------------------------- 189 (437)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (437)
T Consensus 304 ~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~ 383 (908)
T PRK13107 304 ISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQ 383 (908)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHh
Confidence
Q ss_pred --eEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHH--hcCCCcEEEEecchHH
Q 013727 190 --QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDA 265 (437)
Q Consensus 190 --~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~iVf~~s~~~ 265 (437)
.+.+||+|.......+...+.-+...+.........+.-. ..+.....+...+..-+. ...+.++||||.|++.
T Consensus 384 Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d--~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 384 YEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMAD--LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred hhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCC--cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 1122233332222222222222111111111100000111 111222222223333332 2368899999999999
Q ss_pred HHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCC------------------------
Q 013727 266 TRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS------------------------ 321 (437)
Q Consensus 266 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~------------------------ 321 (437)
++.++..|...++++..+|+.+++.++..+.+.|+.|. |+|||+++++|+|+.=
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999997 9999999999999851
Q ss_pred -------------CCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccH
Q 013727 322 -------------VDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (437)
Q Consensus 322 -------------~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 362 (437)
==+||-...+.|..-=.|..||+||.|.+|.+..|++-.|.
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 11788888888888889999999999999999998876654
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.96 E-value=2.4e-27 Score=229.89 Aligned_cols=338 Identities=19% Similarity=0.180 Sum_probs=237.1
Q ss_pred CCHHHHH-HHHhCCCCCChHHHHHHH--HhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 013727 15 LRDELVE-ACENVGWKTPSKIQAEAI--PHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT 91 (437)
Q Consensus 15 l~~~~~~-~l~~~g~~~~~~~Q~~~~--~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~ 91 (437)
+++.+.+ ..+..|...+++||.+++ +.++.+++.+..+||+.|||+++-+.++..++. ....++.+.|-
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~--------~rr~~llilp~ 278 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC--------RRRNVLLILPY 278 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH--------HhhceeEecce
Confidence 4444444 445679999999999998 667788999999999999999999999888776 44558899999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH---HHHHhcCCCCCCCCccEEEEccccc
Q 013727 92 RELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL---MDHLTNTKGFSLGTLKYLVLDEADR 168 (437)
Q Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l---~~~l~~~~~~~~~~~~~vViDE~h~ 168 (437)
.+.+..-...+..+...+|+.+...+|...... ..+...+.|||.++- .+.+.... ++..+++||+||.|+
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g--~~~~~g~vvVdElhm 352 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLINSLIEQG--RLDFLGMVVVDELHM 352 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCC----cccceeeeeeehHhhHhHHHHHHhcC--CccccCcEEEeeeee
Confidence 999988888999999999999988887655432 223467999999874 33333322 567799999999999
Q ss_pred ccccccHHHHHHHHHhC-----CccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccc--cccCceEEEEEc------
Q 013727 169 LLNDDFEKSLDEILNVI-----PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS--TVDTLKQQYRFV------ 235 (437)
Q Consensus 169 ~~~~~~~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------ 235 (437)
+.+.+.+..++.++..+ ....|+|+||||+++. ..+..++ .......-..... ............
T Consensus 353 i~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~-~lL~~~L-~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~l 430 (1008)
T KOG0950|consen 353 IGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN-SLLQDWL-DAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVL 430 (1008)
T ss_pred eeccccchHHHHHHHHHHHhccccceeEeeeecccCCh-HHHHHHh-hhhheecccCcccchhccCCCcccccchhhHHH
Confidence 99988888777766532 3345799999999864 2333322 2111110000000 000000000000
Q ss_pred ----------cCCChHHHHHHHHHh--cCCCcEEEEecchHHHHHHHHHHHhc---------------------------
Q 013727 236 ----------PAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNL--------------------------- 276 (437)
Q Consensus 236 ----------~~~~~~~~~~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~--------------------------- 276 (437)
....+.+.+..+..+ ..+.++||||+++..|+.++..+...
T Consensus 431 r~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~ 510 (1008)
T KOG0950|consen 431 REIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIP 510 (1008)
T ss_pred HHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCC
Confidence 000000111111111 13456999999999998887655321
Q ss_pred -----------CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEec----CCCChhhHHHHh
Q 013727 277 -----------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD----IPTNSKDYIHRV 341 (437)
Q Consensus 277 -----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~----~p~s~~~~~Q~~ 341 (437)
.+.++.+|.+++.++|+.+...|+.|...|++||++++.|+|+|..+++|-.- ...+.-+|.|++
T Consensus 511 ~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~ 590 (1008)
T KOG0950|consen 511 GILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMV 590 (1008)
T ss_pred cccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhh
Confidence 23477899999999999999999999999999999999999998877776422 235677999999
Q ss_pred hhcccCCCC--ceEEEEEccccHHHHHHH
Q 013727 342 GRTARAGRT--GVAISLVNQYELEWYLQI 368 (437)
Q Consensus 342 GR~~R~g~~--g~~i~~~~~~~~~~~~~l 368 (437)
|||||+|-+ |.+++++...+...+..+
T Consensus 591 GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 591 GRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred hhhhhcccccCcceEEEeeccchhHHHHH
Confidence 999999854 899999999887766533
No 101
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=4e-26 Score=232.39 Aligned_cols=311 Identities=18% Similarity=0.214 Sum_probs=210.1
Q ss_pred CChHHHHHHHHhhh----cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 30 TPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
+|++||.+.+.++. .+.+.++.-.+|.|||+..+. ++.++..... ....+|||||. ++..||.+++.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~~-----~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYRG-----ITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhcC-----CCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 68999999999886 467899999999999997543 3444432211 33458999996 6678899999998
Q ss_pred hcCCCcEEEEEEcCCChHHHHH---HhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHH
Q 013727 106 GSGISLRCAVLVGGVDMMQQTL---ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~ 182 (437)
+.. +.+..++|......... ......+|+|+|++.+...... +.-..+++||+||||++-... .....++
T Consensus 242 ~p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~~--Sklskal 314 (1033)
T PLN03142 242 CPV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNEN--SLLSKTM 314 (1033)
T ss_pred CCC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCHH--HHHHHHH
Confidence 754 56666676544322211 1234588999999988664332 233457899999999876532 2334444
Q ss_pred HhCCccceEEEEeecCchH-HHHHHH------------------HhcC-----------------CCc------------
Q 013727 183 NVIPRMRQTYLFSATMTKK-VKKLQR------------------ACLK-----------------NPV------------ 214 (437)
Q Consensus 183 ~~~~~~~~~i~~SAT~~~~-~~~~~~------------------~~~~-----------------~~~------------ 214 (437)
..+.. ...+++|+|+... ...+.. ++.. .|.
T Consensus 315 r~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~ 393 (1033)
T PLN03142 315 RLFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG 393 (1033)
T ss_pred HHhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh
Confidence 44443 3468899996421 111110 0000 000
Q ss_pred -------EEEccccc--------------------cc----------------ccCceE------EE----EEccCCChH
Q 013727 215 -------KIEAASKY--------------------ST----------------VDTLKQ------QY----RFVPAKYKD 241 (437)
Q Consensus 215 -------~~~~~~~~--------------------~~----------------~~~~~~------~~----~~~~~~~~~ 241 (437)
.+.+.... .. .+.+.. .+ ..+....+.
T Consensus 394 LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl 473 (1033)
T PLN03142 394 LPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKM 473 (1033)
T ss_pred CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHH
Confidence 00000000 00 000000 00 001112344
Q ss_pred HHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCC---CceEEEEcCCCCCC
Q 013727 242 CYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG---ECNILICTDVASRG 316 (437)
Q Consensus 242 ~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~ilv~T~~~~~G 316 (437)
..+..++... .+.++|||+........+.++|...++.+..++|+++..+|..+++.|++. ..-+|++|.+++.|
T Consensus 474 ~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlG 553 (1033)
T PLN03142 474 VLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLG 553 (1033)
T ss_pred HHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccC
Confidence 4455555433 568999999999999999999999999999999999999999999999763 34579999999999
Q ss_pred CCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEE
Q 013727 317 LDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAIS 355 (437)
Q Consensus 317 id~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~ 355 (437)
+|+..+++||+||++|+|....|++||+.|.|++..+.+
T Consensus 554 INLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~V 592 (1033)
T PLN03142 554 INLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQV 592 (1033)
T ss_pred CchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEE
Confidence 999999999999999999999999999999998765543
No 102
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=3.9e-27 Score=198.22 Aligned_cols=165 Identities=36% Similarity=0.486 Sum_probs=140.3
Q ss_pred hHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCc
Q 013727 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISL 111 (437)
Q Consensus 32 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 111 (437)
||+|.++++.+.+++++++.+|||+|||++++++++..+.+. ...+++|++|+++|++|+.+.+..++...++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeeccccccccccccccccccccc
Confidence 689999999999999999999999999999999999888753 2338999999999999999999999887788
Q ss_pred EEEEEEcCCChH-HHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCc--c
Q 013727 112 RCAVLVGGVDMM-QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR--M 188 (437)
Q Consensus 112 ~~~~~~g~~~~~-~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~--~ 188 (437)
++..++++.... .....+..+++|+|+||++|.+.+..... .+.++++||+||+|.+....+...+..+...+.. .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKN 152 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTT
T ss_pred ccccccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCCC
Confidence 999999988755 33444445699999999999998887544 6777999999999998888888888888888743 4
Q ss_pred ceEEEEeecCchHHHH
Q 013727 189 RQTYLFSATMTKKVKK 204 (437)
Q Consensus 189 ~~~i~~SAT~~~~~~~ 204 (437)
.+++++|||++..++.
T Consensus 153 ~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 153 IQIILLSATLPSNVEK 168 (169)
T ss_dssp SEEEEEESSSTHHHHH
T ss_pred CcEEEEeeCCChhHhh
Confidence 7899999999966654
No 103
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.2e-24 Score=210.70 Aligned_cols=285 Identities=22% Similarity=0.296 Sum_probs=197.8
Q ss_pred HHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 21 EACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 21 ~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
+..++ .|+ .|+..|+-....+..|+++-+.||||.|||.. .+.+...+.. .+.++++++||..|+.|++
T Consensus 73 ~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a~--------kgkr~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 73 EFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLAK--------KGKRVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHHh--------cCCeEEEEecCHHHHHHHH
Confidence 34444 477 79999999999999999999999999999964 3333333322 6788999999999999999
Q ss_pred HHHHHhhcCCC-cEEEE-EEcCCChHHHHH---Hh-CCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccc
Q 013727 100 EQFEALGSGIS-LRCAV-LVGGVDMMQQTL---AL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD 173 (437)
Q Consensus 100 ~~~~~~~~~~~-~~~~~-~~g~~~~~~~~~---~~-~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~ 173 (437)
+.+++++...+ ..+.. .++..+...... .+ ..+.||+|+|.+-|...+..- .-.++++|++|.+|.++..+
T Consensus 143 ~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L---~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 143 ERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL---SKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh---cccCCCEEEEccHHHHHhcc
Confidence 99999986554 44333 444434333222 22 347999999988776655542 22468999999999654421
Q ss_pred -----------cHH-----------------------HHHHHHHh--------CCccceEEEEeecCchHHH--HHHHHh
Q 013727 174 -----------FEK-----------------------SLDEILNV--------IPRMRQTYLFSATMTKKVK--KLQRAC 209 (437)
Q Consensus 174 -----------~~~-----------------------~~~~i~~~--------~~~~~~~i~~SAT~~~~~~--~~~~~~ 209 (437)
|.. .+..++.. -.+..+++..|||..+.-. .+.+..
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL 299 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL 299 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH
Confidence 111 01111111 1123478899999865432 222222
Q ss_pred cCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecc---hHHHHHHHHHHHhcCCceEeccCC
Q 013727 210 LKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRT---CDATRLLALMLRNLGQRAIPISGH 286 (437)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s---~~~~~~l~~~l~~~~~~~~~~~~~ 286 (437)
++ +.+........++...|... .....+..+++.... ..|||++. ++.+++++++|+.+|+++..+|+.
T Consensus 300 lg----FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 300 LG----FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred hC----CccCccchhhhheeeeeccC---ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 22 22233333334555444433 444455556665544 69999999 999999999999999999999984
Q ss_pred CCHHHHHHHHHHhhCCCceEEEEcC----CCCCCCCCCC-CCEEEEecCC
Q 013727 287 MSQSKRLGALNKFKAGECNILICTD----VASRGLDIPS-VDMVINYDIP 331 (437)
Q Consensus 287 ~~~~~r~~~~~~f~~g~~~ilv~T~----~~~~Gid~~~-~~~Vi~~~~p 331 (437)
....++.|..|++++||++. ++.+|+|+|. ++.+|+++.|
T Consensus 372 -----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 -----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred -----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 26789999999999999874 7999999997 8899999988
No 104
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=3.8e-24 Score=209.69 Aligned_cols=309 Identities=21% Similarity=0.235 Sum_probs=207.0
Q ss_pred CChHHHHHHHHhhhcC----CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 30 TPSKIQAEAIPHALEG----KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~----~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
.+++-|..+++.+.+. +..++.|.||||||.+|+-.+-..+. .+..+|+++|-.+|..|+.++|+..
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~---------~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA---------QGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH---------cCCEEEEEeccccchHHHHHHHHHH
Confidence 5788999999999776 68999999999999999887777766 7788999999999999999999876
Q ss_pred hcCCCcEEEEEEcCCChHHH----HHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccc------ccH
Q 013727 106 GSGISLRCAVLVGGVDMMQQ----TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND------DFE 175 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~------~~~ 175 (437)
.. .++..++++.+..+. .........|||||-..+. ..+.++++||+||-|.-.-. ...
T Consensus 269 Fg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--------~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 269 FG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred hC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc--------CchhhccEEEEeccccccccCCcCCCcCH
Confidence 53 566667776654433 2333457899999955442 26888999999999953221 112
Q ss_pred HHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCCh------HHHHHHHHH
Q 013727 176 KSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK------DCYLVYILT 249 (437)
Q Consensus 176 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~ 249 (437)
.++... ..-..++++|+-|||++ ++.+....-+.+..+...............+..+..+.. ...+...+.
T Consensus 338 RdvA~~-Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~ 414 (730)
T COG1198 338 RDVAVL-RAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIR 414 (730)
T ss_pred HHHHHH-HHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHH
Confidence 223322 33334677999999976 455555444444555554444422222222322222111 123333332
Q ss_pred h--cCCCcEEEEecchHH------------------------------------------------------------HH
Q 013727 250 E--VSASSTMVFTRTCDA------------------------------------------------------------TR 267 (437)
Q Consensus 250 ~--~~~~~~iVf~~s~~~------------------------------------------------------------~~ 267 (437)
+ ..+.++|+|.|.+.. ++
T Consensus 415 ~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gte 494 (730)
T COG1198 415 KTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTE 494 (730)
T ss_pred HHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHH
Confidence 2 256677777665443 35
Q ss_pred HHHHHHHhc--CCceEeccCCCCHH--HHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC-----------
Q 013727 268 LLALMLRNL--GQRAIPISGHMSQS--KRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT----------- 332 (437)
Q Consensus 268 ~l~~~l~~~--~~~~~~~~~~~~~~--~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~----------- 332 (437)
++.+.|... +.++..+.++.+.. .-+..+..|.+|+.+|||.|+|++.|.|+|+++.|...|...
T Consensus 495 rieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~E 574 (730)
T COG1198 495 RIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASE 574 (730)
T ss_pred HHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHH
Confidence 555555544 34566666665443 346789999999999999999999999999999876555331
Q ss_pred -ChhhHHHHhhhcccCCCCceEEEEEcccc
Q 013727 333 -NSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (437)
Q Consensus 333 -s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~ 361 (437)
....+.|..||+||.+.+|.++.-....+
T Consensus 575 r~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 575 RTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 23456899999999988887776554433
No 105
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.1e-24 Score=216.70 Aligned_cols=308 Identities=22% Similarity=0.277 Sum_probs=218.9
Q ss_pred ChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-HhhcCC
Q 013727 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE-ALGSGI 109 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~-~~~~~~ 109 (437)
-+....+++.++.+++.+++.|+||||||+..-..+++.-. .....+.+.-|.|--|..+++++. .++...
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 46777788888888899999999999999863333333222 145678899999977777776654 454444
Q ss_pred CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccc-ccccccH-HHHHHHHHhCCc
Q 013727 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR-LLNDDFE-KSLDEILNVIPR 187 (437)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~-~~~~~~~-~~~~~i~~~~~~ 187 (437)
|-.|+...-.. ........|-++|.|.|++.+..+. .++.+++||+||+|. .++.++. ..+..++...+.
T Consensus 123 G~~VGY~iRfe------~~~s~~Trik~mTdGiLlrei~~D~--~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~ 194 (845)
T COG1643 123 GETVGYSIRFE------SKVSPRTRIKVMTDGILLREIQNDP--LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD 194 (845)
T ss_pred CceeeEEEEee------ccCCCCceeEEeccHHHHHHHhhCc--ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC
Confidence 43443332221 1223457899999999999998776 589999999999994 3444443 335555666666
Q ss_pred cceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEcc-CCC-hHHHHHHH---HHhcCCCcEEEEecc
Q 013727 188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKY-KDCYLVYI---LTEVSASSTMVFTRT 262 (437)
Q Consensus 188 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~---l~~~~~~~~iVf~~s 262 (437)
.-.+|+||||+.. +.+...+.+-|........+ .+...|.... ..+ -...+... ......+.+|||.+.
T Consensus 195 DLKiIimSATld~--~rfs~~f~~apvi~i~GR~f----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG 268 (845)
T COG1643 195 DLKLIIMSATLDA--ERFSAYFGNAPVIEIEGRTY----PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPG 268 (845)
T ss_pred CceEEEEecccCH--HHHHHHcCCCCEEEecCCcc----ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCc
Confidence 6789999999885 46666555555443322221 2222332222 222 22222222 223457889999999
Q ss_pred hHHHHHHHHHHHh--c--CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecC--------
Q 013727 263 CDATRLLALMLRN--L--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI-------- 330 (437)
Q Consensus 263 ~~~~~~l~~~l~~--~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~-------- 330 (437)
..+.+..++.|.+ . ...+..+||.++.+++.++++--..|..+|++||++++.++.+|+++.||+-+.
T Consensus 269 ~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~ 348 (845)
T COG1643 269 QREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDP 348 (845)
T ss_pred HHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccc
Confidence 9999999999997 3 467888999999999999887777777779999999999999999999998554
Q ss_pred ----------CCChhhHHHHhhhcccCCCCceEEEEEcccc
Q 013727 331 ----------PTNSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (437)
Q Consensus 331 ----------p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~ 361 (437)
|-|.++..||.|||||. .+|.|+-+++..+
T Consensus 349 ~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 349 RTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred ccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 34667889999999997 4799999997643
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.93 E-value=8.7e-25 Score=221.12 Aligned_cols=321 Identities=19% Similarity=0.175 Sum_probs=209.5
Q ss_pred ChHHHHHHHHhhhcC---C-cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 31 PSKIQAEAIPHALEG---K-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~~---~-~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
.+++|..++..+... . .+++.||||+|||.+.+.++...+.... ....+++++.|++.+++++++.++.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~-----~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI-----KLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc-----cccceEEEEccHHHHHHHHHHHHHhhh
Confidence 599999999998864 4 7889999999999999998888776520 046789999999999999999999876
Q ss_pred cCCCcEEEEEEcCCChHHHHHH-h-------------CCCCcEEEECchHHHHHHhcCCCCC-C--CCccEEEEcccccc
Q 013727 107 SGISLRCAVLVGGVDMMQQTLA-L-------------GKRPHIVVATPGRLMDHLTNTKGFS-L--GTLKYLVLDEADRL 169 (437)
Q Consensus 107 ~~~~~~~~~~~g~~~~~~~~~~-~-------------~~~~~iiv~Tp~~l~~~l~~~~~~~-~--~~~~~vViDE~h~~ 169 (437)
...++.....++.......... . .....+.++||............+. + --.+++|+||+|.+
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 5544333312332221111000 0 0012344555544433211111111 0 12468999999977
Q ss_pred cccccHHHHHHHHHhCC-ccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccc---cccCceEEE-EEccCCChHHHH
Q 013727 170 LNDDFEKSLDEILNVIP-RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS---TVDTLKQQY-RFVPAKYKDCYL 244 (437)
Q Consensus 170 ~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~ 244 (437)
.+......+..++..+. .+..++++|||+|+.........+.....+....... ......... ............
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 430 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELI 430 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhh
Confidence 66533333444444332 3557999999999998887777776654443332100 001111110 000000000111
Q ss_pred HHHH-HhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhh----CCCceEEEEcCCCCCCCCC
Q 013727 245 VYIL-TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK----AGECNILICTDVASRGLDI 319 (437)
Q Consensus 245 ~~~l-~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~ilv~T~~~~~Gid~ 319 (437)
.... .-..+.+++|.|||+..|.++++.|+..+.++..+||.+...+|.+.+..+. .+...|+|||++++.|+|+
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 1111 2235789999999999999999999998878999999999999998887554 4678999999999999999
Q ss_pred CCCCEEEEecCCCChhhHHHHhhhcccCC--CCceEEEEEcc
Q 013727 320 PSVDMVINYDIPTNSKDYIHRVGRTARAG--RTGVAISLVNQ 359 (437)
Q Consensus 320 ~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g--~~g~~i~~~~~ 359 (437)
+.+.+|- -+.+.+..+||+||++|.| ..|..+.+...
T Consensus 511 -dfd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 511 -DFDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred -ccCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 5676663 3355889999999999999 45666666544
No 107
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.93 E-value=5.4e-23 Score=212.46 Aligned_cols=329 Identities=17% Similarity=0.248 Sum_probs=204.8
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHH----hhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 013727 15 LRDELVEACENVGWKTPSKIQAEAIP----HALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (437)
Q Consensus 15 l~~~~~~~l~~~g~~~~~~~Q~~~~~----~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P 90 (437)
+++...+.+...||. +|+.|.+.++ .+.+++++++.||||+|||++|++|++.... .+.+++|.+|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---------~~~~vvi~t~ 300 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---------TEKPVVISTN 300 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---------CCCeEEEEeC
Confidence 344666777788995 8999998665 5556789999999999999999999987654 2347999999
Q ss_pred cHHHHHHHHH-HHHHhhcCC--CcEEEEEEcCCChH--------------------------------------------
Q 013727 91 TRELAIQISE-QFEALGSGI--SLRCAVLVGGVDMM-------------------------------------------- 123 (437)
Q Consensus 91 ~~~L~~q~~~-~~~~~~~~~--~~~~~~~~g~~~~~-------------------------------------------- 123 (437)
|++|..|+.. .+..+...+ ++++..+.|+....
T Consensus 301 t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~ 380 (850)
T TIGR01407 301 TKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKG 380 (850)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCC
Confidence 9999999864 555554433 36677666654320
Q ss_pred ---------------------------HHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccc----
Q 013727 124 ---------------------------QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND---- 172 (437)
Q Consensus 124 ---------------------------~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~---- 172 (437)
.........++|||++...|+..+..... -+...+++||||||++.+.
T Consensus 381 ~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~-ilp~~~~lIiDEAH~L~d~a~~~ 459 (850)
T TIGR01407 381 GNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPE-LFPSFRDLIIDEAHHLPDIAENQ 459 (850)
T ss_pred cchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccc-cCCCCCEEEEECcchHHHHHHHH
Confidence 00001112568999999998887754332 2466789999999976430
Q ss_pred ---cc-----HHH----------------------------------------------------------------HHH
Q 013727 173 ---DF-----EKS----------------------------------------------------------------LDE 180 (437)
Q Consensus 173 ---~~-----~~~----------------------------------------------------------------~~~ 180 (437)
.+ ... +..
T Consensus 460 ~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 539 (850)
T TIGR01407 460 LQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRK 539 (850)
T ss_pred hcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 00 000 000
Q ss_pred HHHh-----------C-------------------------------------CccceEEEEeecCch--HHHHHHHHhc
Q 013727 181 ILNV-----------I-------------------------------------PRMRQTYLFSATMTK--KVKKLQRACL 210 (437)
Q Consensus 181 i~~~-----------~-------------------------------------~~~~~~i~~SAT~~~--~~~~~~~~~~ 210 (437)
.+.. + +....+|++|||+.. ....+.....
T Consensus 540 ~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lG 619 (850)
T TIGR01407 540 FDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLG 619 (850)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcC
Confidence 0000 0 011257899999873 2334443332
Q ss_pred CC-CcEEEcccccccccCceEEEEEccC-------CChHH---HHHHHH---HhcCCCcEEEEecchHHHHHHHHHHHhc
Q 013727 211 KN-PVKIEAASKYSTVDTLKQQYRFVPA-------KYKDC---YLVYIL---TEVSASSTMVFTRTCDATRLLALMLRNL 276 (437)
Q Consensus 211 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~l---~~~~~~~~iVf~~s~~~~~~l~~~l~~~ 276 (437)
-+ ....... .++.+...+....++. ..... .+...+ ....++++|||++|....+.++..|...
T Consensus 620 l~~~~~~~~~--~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~ 697 (850)
T TIGR01407 620 LTDVHFNTIE--PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNEL 697 (850)
T ss_pred CCccccceec--CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhh
Confidence 22 1111111 1111111111112111 01111 111211 1235578999999999999999999752
Q ss_pred ----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCC--EEEEecCCCCh----------------
Q 013727 277 ----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD--MVINYDIPTNS---------------- 334 (437)
Q Consensus 277 ----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~--~Vi~~~~p~s~---------------- 334 (437)
++. ++..+.. .+|.++++.|++++..||++|+.+++|+|+|+.. .||....|...
T Consensus 698 ~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~ 774 (850)
T TIGR01407 698 PEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQE 774 (850)
T ss_pred ccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHh
Confidence 333 3333333 4788899999999999999999999999999855 67777777421
Q ss_pred --------------hhHHHHhhhcccCCCCceEEEEEcc
Q 013727 335 --------------KDYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 335 --------------~~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
..+.|.+||.-|...+.-++++.+.
T Consensus 775 g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 775 GKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred cCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 1347999999998766444555544
No 108
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.1e-23 Score=198.09 Aligned_cols=307 Identities=21% Similarity=0.295 Sum_probs=211.1
Q ss_pred hHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHhhcCCC
Q 013727 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF-EALGSGIS 110 (437)
Q Consensus 32 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~-~~~~~~~~ 110 (437)
..+-.+++..+...+.++|.|+||||||+. +-+++.+.... ....+.+.-|.|--|..++.+. .+++..+|
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG~~----~~g~I~~TQPRRVAavslA~RVAeE~~~~lG 124 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAGFA----SSGKIACTQPRRVAAVSLAKRVAEEMGCQLG 124 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhcccc----cCCcEEeecCchHHHHHHHHHHHHHhCCCcC
Confidence 455567777777889999999999999986 34555443322 3334888899998777777554 45555555
Q ss_pred cEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccc-cccc-cHHHHHHHHHhCCcc
Q 013727 111 LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL-LNDD-FEKSLDEILNVIPRM 188 (437)
Q Consensus 111 ~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~-~~~~-~~~~~~~i~~~~~~~ 188 (437)
-.|+...-=. ........|.+.|.|.|++.+..++ .++.+++||+||||.= +..+ ....++.++...+ .
T Consensus 125 ~~VGY~IRFe------d~ts~~TrikymTDG~LLRE~l~Dp--~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~-~ 195 (674)
T KOG0922|consen 125 EEVGYTIRFE------DSTSKDTRIKYMTDGMLLREILKDP--LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRP-D 195 (674)
T ss_pred ceeeeEEEec------ccCCCceeEEEecchHHHHHHhcCC--ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCC-C
Confidence 4443332211 1112347899999999999888776 6889999999999941 1111 2233444444443 3
Q ss_pred ceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccC-CChHHHHH---HHHHhcCCCcEEEEecchH
Q 013727 189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLV---YILTEVSASSTMVFTRTCD 264 (437)
Q Consensus 189 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~l~~~~~~~~iVf~~s~~ 264 (437)
..+|++|||+.. +.+...+..-|.....+.. . .+...|..-+. .+-...+. .+-...+.+.+|||....+
T Consensus 196 LklIimSATlda--~kfS~yF~~a~i~~i~GR~-f---PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 196 LKLIIMSATLDA--EKFSEYFNNAPILTIPGRT-F---PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQE 269 (674)
T ss_pred ceEEEEeeeecH--HHHHHHhcCCceEeecCCC-C---ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHH
Confidence 469999999884 4555655554544332222 1 12222222222 22222222 2333456778999999999
Q ss_pred HHHHHHHHHHhc----CC----ceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecC------
Q 013727 265 ATRLLALMLRNL----GQ----RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI------ 330 (437)
Q Consensus 265 ~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~------ 330 (437)
+.+.+++.|.+. +. -+..+||.++.+++.++...-..|..+|+++|++++..+.++++..||+-+.
T Consensus 270 EIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y 349 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKY 349 (674)
T ss_pred HHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEee
Confidence 999999888764 11 2356899999999999988888899999999999999999999999998553
Q ss_pred ------------CCChhhHHHHhhhcccCCCCceEEEEEccccH
Q 013727 331 ------------PTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (437)
Q Consensus 331 ------------p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 362 (437)
|-|..+-.||.|||||.| .|.|+-+++..+.
T Consensus 350 ~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 350 NPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred ccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 447778899999999975 7999999976654
No 109
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.92 E-value=6.6e-23 Score=205.41 Aligned_cols=298 Identities=18% Similarity=0.171 Sum_probs=179.0
Q ss_pred ChHHHHHHHHhhhc----------CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH
Q 013727 31 PSKIQAEAIPHALE----------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 100 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~----------~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 100 (437)
++.+|..++..+.. .+..+++++||||||++++..+.. +.... ...++||++|+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~-l~~~~------~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARK-ALELL------KNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHH-HHhhc------CCCeEEEEECcHHHHHHHHH
Confidence 89999999988742 257999999999999986654433 33221 56789999999999999999
Q ss_pred HHHHhhcCCCcEEEEEEcCCChHHHHHHhC-CCCcEEEECchHHHHHHhcC-CCCCCCCc-cEEEEcccccccccccHHH
Q 013727 101 QFEALGSGISLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNT-KGFSLGTL-KYLVLDEADRLLNDDFEKS 177 (437)
Q Consensus 101 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~-~~~~~~~~-~~vViDE~h~~~~~~~~~~ 177 (437)
.|..++.... .+..+.......+. ....|+|+|.++|...+... ..+..... .+||+||||+.....+...
T Consensus 312 ~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~ 385 (667)
T TIGR00348 312 EFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKN 385 (667)
T ss_pred HHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHH
Confidence 9999863211 11112222222222 34689999999997643321 11122112 2899999998654433322
Q ss_pred HHHHHHhCCccceEEEEeecCchHHHHH-HHHh---cCCCcEEEcccccccccCceE--EEEEcc---------------
Q 013727 178 LDEILNVIPRMRQTYLFSATMTKKVKKL-QRAC---LKNPVKIEAASKYSTVDTLKQ--QYRFVP--------------- 236 (437)
Q Consensus 178 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------- 236 (437)
+...+|. ...++|||||....... ...+ .+++.... .......+.... .|....
T Consensus 386 ---l~~~~p~-a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y-~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~ 460 (667)
T TIGR00348 386 ---LKKALKN-ASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRY-FITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFD 460 (667)
T ss_pred ---HHhhCCC-CcEEEEeCCCcccccccccccccCCCCCeEEEe-eHHHHhhcCCeeeEEEEecchhhccChHHHHHHHH
Confidence 2244544 56899999996421110 0111 11211110 000000000000 000000
Q ss_pred -------C---CC---------------------hHHHHHHHHHh------cCCCcEEEEecchHHHHHHHHHHHhc---
Q 013727 237 -------A---KY---------------------KDCYLVYILTE------VSASSTMVFTRTCDATRLLALMLRNL--- 276 (437)
Q Consensus 237 -------~---~~---------------------~~~~~~~~l~~------~~~~~~iVf~~s~~~~~~l~~~l~~~--- 276 (437)
. .. .......++.. ..+.+++|||.++.+|..+.+.|.+.
T Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 461 EIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccc
Confidence 0 00 00001111111 12488999999999999999888664
Q ss_pred --CCceEeccCCCCHH---------------------HHHHHHHHhhC-CCceEEEEcCCCCCCCCCCCCCEEEEecCCC
Q 013727 277 --GQRAIPISGHMSQS---------------------KRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPT 332 (437)
Q Consensus 277 --~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~ 332 (437)
+....++++..+.. ....++++|++ +..+|||+++++..|+|.|.+++++...+..
T Consensus 541 ~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk 620 (667)
T TIGR00348 541 KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK 620 (667)
T ss_pred ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc
Confidence 23445555543322 22468889976 6889999999999999999999999666545
Q ss_pred ChhhHHHHhhhcccC
Q 013727 333 NSKDYIHRVGRTARA 347 (437)
Q Consensus 333 s~~~~~Q~~GR~~R~ 347 (437)
+ ..++|.+||+.|.
T Consensus 621 ~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 621 Y-HGLLQAIARTNRI 634 (667)
T ss_pred c-cHHHHHHHHhccc
Confidence 4 5689999999994
No 110
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.9e-22 Score=194.53 Aligned_cols=320 Identities=19% Similarity=0.137 Sum_probs=217.5
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|+ .|++.|.-..-.++.| -+..+.||+|||+++.+|++...+ .+..+.|++|+..||.|-++.+..
T Consensus 74 ~lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL---------~G~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 74 TLGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYAL---------QGRRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred HcCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHH---------cCCCeEEEcCCHHHHHHHHHHHHH
Confidence 3688 6999999999998877 477999999999999998887766 677799999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCC-----CCCCCCccEEEEccccccccc------
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLND------ 172 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~-----~~~~~~~~~vViDE~h~~~~~------ 172 (437)
+...+++++.++.++.+.......+ .+||+++|...| .++|..+- ....+.+.+.|+||+|.++=.
T Consensus 142 ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPL 219 (764)
T PRK12326 142 LYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPL 219 (764)
T ss_pred HHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCce
Confidence 9999999999999988776555554 489999998765 23332211 123466889999999953210
Q ss_pred ---------ccHHHHHHHHHhCCcc-------------------------------------------------------
Q 013727 173 ---------DFEKSLDEILNVIPRM------------------------------------------------------- 188 (437)
Q Consensus 173 ---------~~~~~~~~i~~~~~~~------------------------------------------------------- 188 (437)
.....+..+...+...
T Consensus 220 iISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~ 299 (764)
T PRK12326 220 VLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQ 299 (764)
T ss_pred eeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHh
Confidence 0111111111111110
Q ss_pred ---------------------------------------------------------------ceEEEEeecCchHHHHH
Q 013727 189 ---------------------------------------------------------------RQTYLFSATMTKKVKKL 205 (437)
Q Consensus 189 ---------------------------------------------------------------~~~i~~SAT~~~~~~~~ 205 (437)
..+.+||+|.......+
T Consensus 300 ~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef 379 (764)
T PRK12326 300 RDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQL 379 (764)
T ss_pred cCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHH
Confidence 12345566655555555
Q ss_pred HHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHH-H-hcCCCcEEEEecchHHHHHHHHHHHhcCCceEec
Q 013727 206 QRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL-T-EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 283 (437)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~-~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~ 283 (437)
...+..+-..+.........+... ..+.....+...+..-+ . ...+.|+||.|.|++.++.++..|.+.|++..++
T Consensus 380 ~~iY~l~Vv~IPtnkp~~R~d~~d--~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vL 457 (764)
T PRK12326 380 RQFYDLGVSVIPPNKPNIREDEAD--RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVL 457 (764)
T ss_pred HHHhCCcEEECCCCCCceeecCCC--ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceee
Confidence 544433322221111111111111 12222222333333332 2 2378999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCC---------------CCEEEEecCCCChhhHHHHhhhcccCC
Q 013727 284 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS---------------VDMVINYDIPTNSKDYIHRVGRTARAG 348 (437)
Q Consensus 284 ~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~---------------~~~Vi~~~~p~s~~~~~Q~~GR~~R~g 348 (437)
+......|-..+-+.=+. -.|.|||+|+++|.|+.- ==+||....+.|..--.|..||+||.|
T Consensus 458 NAk~~~~EA~IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG 535 (764)
T PRK12326 458 NAKNDAEEARIIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG 535 (764)
T ss_pred ccCchHhHHHHHHhcCCC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC
Confidence 987544442222222223 379999999999999852 127888999999999999999999999
Q ss_pred CCceEEEEEccccH
Q 013727 349 RTGVAISLVNQYEL 362 (437)
Q Consensus 349 ~~g~~i~~~~~~~~ 362 (437)
.+|.+..|++-.|.
T Consensus 536 DpGss~f~lSleDd 549 (764)
T PRK12326 536 DPGSSVFFVSLEDD 549 (764)
T ss_pred CCCceeEEEEcchh
Confidence 99999988876653
No 111
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=4.8e-23 Score=204.15 Aligned_cols=124 Identities=20% Similarity=0.231 Sum_probs=109.3
Q ss_pred CChHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCC
Q 013727 238 KYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 315 (437)
Q Consensus 238 ~~~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~ 315 (437)
..+...+...+... .+.++||||+|++.++.++..|...++++..+|+ .+.+|+..+..|..+...|+|||+++++
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 34555666666433 7889999999999999999999999999999997 6889999999999999999999999999
Q ss_pred CCCCC---CCC-----EEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHH
Q 013727 316 GLDIP---SVD-----MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELE 363 (437)
Q Consensus 316 Gid~~---~~~-----~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~ 363 (437)
|+|++ .|. +||+++.|.|...|.|++||+||.|.+|.+++|++..|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999 443 4589999999999999999999999999999999876644
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=5.3e-22 Score=196.57 Aligned_cols=130 Identities=22% Similarity=0.322 Sum_probs=113.5
Q ss_pred HHHHHHHHHh--cCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCC
Q 013727 241 DCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLD 318 (437)
Q Consensus 241 ~~~~~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid 318 (437)
...+...+.. ..+.++||||++++.++.+++.|...|+++..+|+++++.+|..++..|+.|++.|||||+.+++|+|
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfD 507 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 507 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCee
Confidence 3344444443 35678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEec-----CCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHH
Q 013727 319 IPSVDMVINYD-----IPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKL 371 (437)
Q Consensus 319 ~~~~~~Vi~~~-----~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~ 371 (437)
+|++++||++| .|.+..+|+||+||+||. ..|.++++++..+......+.+.
T Consensus 508 iP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 508 LPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred eCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 99999999988 799999999999999998 68999999987665554444443
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.91 E-value=2.8e-23 Score=199.91 Aligned_cols=294 Identities=20% Similarity=0.253 Sum_probs=195.4
Q ss_pred CChHHHHHHHHhhhc----C-CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 30 TPSKIQAEAIPHALE----G-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~----~-~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|.||..|+..+.+ | +.+|+++.||+|||.++ +.++..|++.. ...++|+|+.+++|+.|....+..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~------~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG------WVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc------hhheeeEEechHHHHHHHHHHHHH
Confidence 589999999988764 3 56999999999999985 45667777654 567899999999999999999988
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcC----CCCCCCCccEEEEcccccccccccHHHHHH
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT----KGFSLGTLKYLVLDEADRLLNDDFEKSLDE 180 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~----~~~~~~~~~~vViDE~h~~~~~~~~~~~~~ 180 (437)
+.... -.+..+.+... ...+.|.++|..++...+... ..+....+++||+||||+- ....++.
T Consensus 238 ~~P~~-~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~ 304 (875)
T COG4096 238 FLPFG-TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSS 304 (875)
T ss_pred hCCCc-cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHH
Confidence 86442 12222222111 114789999999998766543 2356677999999999974 4445557
Q ss_pred HHHhCCccceEEEEeecCchHHHHHHHHhc-CCCcE------------------EEccccc----ccccC----------
Q 013727 181 ILNVIPRMRQTYLFSATMTKKVKKLQRACL-KNPVK------------------IEAASKY----STVDT---------- 227 (437)
Q Consensus 181 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~------------------~~~~~~~----~~~~~---------- 227 (437)
|+.++.... +++|||+...+..-.-.++ +.|.. +.+.... ..+..
T Consensus 305 I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 777765444 3449998875544333333 33321 1111100 00000
Q ss_pred -c---eEEEEEccC------CChHHHH----HHHHHh--cC--CCcEEEEecchHHHHHHHHHHHhcC-----CceEecc
Q 013727 228 -L---KQQYRFVPA------KYKDCYL----VYILTE--VS--ASSTMVFTRTCDATRLLALMLRNLG-----QRAIPIS 284 (437)
Q Consensus 228 -~---~~~~~~~~~------~~~~~~~----~~~l~~--~~--~~~~iVf~~s~~~~~~l~~~l~~~~-----~~~~~~~ 284 (437)
+ .+.+...+- ......+ ...+.. .+ -+++||||.+..+|+.+...|.... --+..+.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0 000111110 0111222 222333 11 3689999999999999999998652 3356667
Q ss_pred CCCCHHHHHHHHHHhhC--CCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccC
Q 013727 285 GHMSQSKRLGALNKFKA--GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARA 347 (437)
Q Consensus 285 ~~~~~~~r~~~~~~f~~--g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 347 (437)
++....+ ..+..|.. .-.+|.|+.+++..|+|+|.|..++.+....|...|.|++||+-|.
T Consensus 463 ~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 463 GDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 6644433 34555543 4567999999999999999999999999999999999999999996
No 114
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.90 E-value=1.9e-21 Score=184.51 Aligned_cols=314 Identities=19% Similarity=0.231 Sum_probs=219.2
Q ss_pred CChHHHHHHHHhhhc----CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 30 TPSKIQAEAIPHALE----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
.+++||.+-++++.+ |-+.++.-.+|-|||+.. +..+.++..... ..+..||+||...| ..|.+++++|
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~-----~~GPfLVi~P~StL-~NW~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKG-----IPGPFLVIAPKSTL-DNWMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcC-----CCCCeEEEeeHhhH-HHHHHHHHHh
Confidence 599999999999875 568999999999999863 344555544221 23347999998776 4588899999
Q ss_pred hcCCCcEEEEEEcCCChHHHHH---HhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHH
Q 013727 106 GSGISLRCAVLVGGVDMMQQTL---ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~ 182 (437)
+.. +++.+++|+........ ......+|+|+|++..+..-. .+.--...++||||||++-+. ...+..++
T Consensus 240 ~P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~---~lk~~~W~ylvIDEaHRiKN~--~s~L~~~l 312 (971)
T KOG0385|consen 240 TPS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS---FLKKFNWRYLVIDEAHRIKNE--KSKLSKIL 312 (971)
T ss_pred CCC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH---HHhcCCceEEEechhhhhcch--hhHHHHHH
Confidence 865 78888888865433221 223478999999998765321 123345889999999998663 33444566
Q ss_pred HhCCccceEEEEeecCchH-HHHH------------------HHHh----------------------------------
Q 013727 183 NVIPRMRQTYLFSATMTKK-VKKL------------------QRAC---------------------------------- 209 (437)
Q Consensus 183 ~~~~~~~~~i~~SAT~~~~-~~~~------------------~~~~---------------------------------- 209 (437)
..+.... .+++|+|+-.. +..+ ..++
T Consensus 313 r~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s 391 (971)
T KOG0385|consen 313 REFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKS 391 (971)
T ss_pred HHhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhc
Confidence 6655444 46777774321 1111 1111
Q ss_pred -----------------------------------------------------cCCCcEEEcccccccccCceEEEEEcc
Q 013727 210 -----------------------------------------------------LKNPVKIEAASKYSTVDTLKQQYRFVP 236 (437)
Q Consensus 210 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (437)
++.|..+... .+.+.....-..+.
T Consensus 392 LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~---ePg~pyttdehLv~ 468 (971)
T KOG0385|consen 392 LPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA---EPGPPYTTDEHLVT 468 (971)
T ss_pred CCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC---CCCCCCCcchHHHh
Confidence 0001111000 00011111122333
Q ss_pred CCChHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCC---ceEEEEcC
Q 013727 237 AKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE---CNILICTD 311 (437)
Q Consensus 237 ~~~~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~ilv~T~ 311 (437)
+..|...+..+|... .+.++|||........-+.+++--.++....+.|.++.++|...++.|.... .-.|++|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 455666677777644 6889999999998888888888888999999999999999999999998744 44699999
Q ss_pred CCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEE--EEcccc
Q 013727 312 VASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAIS--LVNQYE 361 (437)
Q Consensus 312 ~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~--~~~~~~ 361 (437)
+.+-|||+..+++||.||..|+|..=+|..-||+|.|++..+.+ +++...
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 99999999999999999999999999999999999998765544 454443
No 115
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.89 E-value=3.9e-20 Score=188.59 Aligned_cols=312 Identities=20% Similarity=0.254 Sum_probs=193.4
Q ss_pred CCCCCChHHHHHHHHhhh----cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH-HH
Q 013727 26 VGWKTPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI-SE 100 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~-~~ 100 (437)
-|| .+|+-|.+....+. .++.+++.|+||+|||++|++|++... .+.+++|++||++|++|+ ..
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------~~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------DQRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----------CCCcEEEEeCcHHHHHHHHHH
Confidence 467 59999999544443 467899999999999999999988643 346799999999999999 56
Q ss_pred HHHHhhcCCCcEEEEEEcCCChH---------------------------------------------------------
Q 013727 101 QFEALGSGISLRCAVLVGGVDMM--------------------------------------------------------- 123 (437)
Q Consensus 101 ~~~~~~~~~~~~~~~~~g~~~~~--------------------------------------------------------- 123 (437)
.+..+....++++..+.|+..+.
T Consensus 311 ~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~ 390 (820)
T PRK07246 311 EVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDG 390 (820)
T ss_pred HHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccC
Confidence 77777766777777777664320
Q ss_pred --------------HHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccc-----c-------HH-
Q 013727 124 --------------QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-----F-------EK- 176 (437)
Q Consensus 124 --------------~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~-----~-------~~- 176 (437)
...+.-...++|||++...|+..+.... .+...+++||||||++.+.. . ..
T Consensus 391 ~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~ 468 (820)
T PRK07246 391 NLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQT 468 (820)
T ss_pred CCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHH
Confidence 0000011256899999998888775544 35779999999999764310 0 00
Q ss_pred -------------------------------------------------HHHHH--------HHhC--------------
Q 013727 177 -------------------------------------------------SLDEI--------LNVI-------------- 185 (437)
Q Consensus 177 -------------------------------------------------~~~~i--------~~~~-------------- 185 (437)
.+..+ ...+
T Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~ 548 (820)
T PRK07246 469 IQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQ 548 (820)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 00000 0000
Q ss_pred ----------------------CccceEEEEeecCc--hHHHHHHHHhc-CCCcEEEcccccccccCceEEEEE----cc
Q 013727 186 ----------------------PRMRQTYLFSATMT--KKVKKLQRACL-KNPVKIEAASKYSTVDTLKQQYRF----VP 236 (437)
Q Consensus 186 ----------------------~~~~~~i~~SAT~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~ 236 (437)
+....+|++|||++ +... +...+. ......... .... .+.... ++
T Consensus 549 ~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~---~~~~--~~~~~~i~~~~p 622 (820)
T PRK07246 549 SEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE---KDKK--QDQLVVVDQDMP 622 (820)
T ss_pred CCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC---CChH--HccEEEeCCCCC
Confidence 01125678888885 2222 333222 121111111 0101 111111 12
Q ss_pred CC---ChHHH---HHHHHH--hcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEE
Q 013727 237 AK---YKDCY---LVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308 (437)
Q Consensus 237 ~~---~~~~~---~~~~l~--~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv 308 (437)
.. ..... +...+. ...+++++|+++|.+..+.+++.|......+ ..-|... .+..++++|++++..||+
T Consensus 623 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLl 699 (820)
T PRK07246 623 LVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILL 699 (820)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEE
Confidence 11 11111 111111 1356899999999999999999997654444 3333222 245689999998889999
Q ss_pred EcCCCCCCCCCCC--CCEEEEecCCCC-h-----------------------------hhHHHHhhhcccCCCCceEEEE
Q 013727 309 CTDVASRGLDIPS--VDMVINYDIPTN-S-----------------------------KDYIHRVGRTARAGRTGVAISL 356 (437)
Q Consensus 309 ~T~~~~~Gid~~~--~~~Vi~~~~p~s-~-----------------------------~~~~Q~~GR~~R~g~~g~~i~~ 356 (437)
+|+.+.+|+|+|+ ...||....|.. + ..+.|.+||.-|...+.-++++
T Consensus 700 G~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~i 779 (820)
T PRK07246 700 GLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLI 779 (820)
T ss_pred ecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 9999999999974 455677776642 1 1347999999998765334455
Q ss_pred Ecc
Q 013727 357 VNQ 359 (437)
Q Consensus 357 ~~~ 359 (437)
+++
T Consensus 780 lD~ 782 (820)
T PRK07246 780 LDR 782 (820)
T ss_pred ECC
Confidence 544
No 116
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2.7e-21 Score=180.67 Aligned_cols=311 Identities=21% Similarity=0.271 Sum_probs=211.1
Q ss_pred CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH-HHH
Q 013727 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ-FEA 104 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~-~~~ 104 (437)
.......++-.+.+.++..++.++|.|.||||||.. +=+++.+..-. ..+..+-+.-|.|--|-.++.+ .+.
T Consensus 261 RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ----iPQyL~EaGyt---k~gk~IgcTQPRRVAAmSVAaRVA~E 333 (902)
T KOG0923|consen 261 RKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ----IPQYLYEAGYT---KGGKKIGCTQPRRVAAMSVAARVAEE 333 (902)
T ss_pred HhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc----ccHHHHhcccc---cCCceEeecCcchHHHHHHHHHHHHH
Confidence 455566788889999999999999999999999985 23444332211 1344577888999888877654 455
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccc-ccccccH-HHHHHHH
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR-LLNDDFE-KSLDEIL 182 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~-~~~~~~~-~~~~~i~ 182 (437)
++..+|-.|+.-.- .........-+-++|.|+|++-+...+ ++..+++|||||||. -+..+.. ..+..|.
T Consensus 334 MgvkLG~eVGYsIR------FEdcTSekTvlKYMTDGmLlREfL~ep--dLasYSViiiDEAHERTL~TDILfgLvKDIa 405 (902)
T KOG0923|consen 334 MGVKLGHEVGYSIR------FEDCTSEKTVLKYMTDGMLLREFLSEP--DLASYSVIIVDEAHERTLHTDILFGLVKDIA 405 (902)
T ss_pred hCcccccccceEEE------eccccCcceeeeeecchhHHHHHhccc--cccceeEEEeehhhhhhhhhhHHHHHHHHHH
Confidence 55444333222111 011112345688999999998877654 789999999999994 2222221 2233333
Q ss_pred HhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCC-ChHHHHHHHHH---hcCCCcEEE
Q 013727 183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILT---EVSASSTMV 258 (437)
Q Consensus 183 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~---~~~~~~~iV 258 (437)
.+.+.-.+++.|||+.. +.+...+..-|+.......+. +...|...++. +-...+..+++ ..+.+.+||
T Consensus 406 -r~RpdLKllIsSAT~DA--ekFS~fFDdapIF~iPGRRyP----Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILV 478 (902)
T KOG0923|consen 406 -RFRPDLKLLISSATMDA--EKFSAFFDDAPIFRIPGRRYP----VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILV 478 (902)
T ss_pred -hhCCcceEEeeccccCH--HHHHHhccCCcEEeccCcccc----eeeecccCCchhHHHHHHhhheeeEeccCCccEEE
Confidence 33456679999999874 456555555555543333221 22334344432 23333333333 235688999
Q ss_pred EecchHHHHHHHHHHHh----cC-----CceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEec
Q 013727 259 FTRTCDATRLLALMLRN----LG-----QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD 329 (437)
Q Consensus 259 f~~s~~~~~~l~~~l~~----~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~ 329 (437)
|....+..+...+.|.. +| +-+..+|+.++.+.+..+.+--..|..+|++||++++..+.++++..||+-+
T Consensus 479 FltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpG 558 (902)
T KOG0923|consen 479 FLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPG 558 (902)
T ss_pred EeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCc
Confidence 99998887777666654 33 3467789999999999998888889999999999999999999999999855
Q ss_pred C------------------CCChhhHHHHhhhcccCCCCceEEEEEcc
Q 013727 330 I------------------PTNSKDYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 330 ~------------------p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
. |-|.++-.||.||+||.| +|+|+-+++.
T Consensus 559 f~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 559 FVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred cccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 4 335667799999999986 7999999973
No 117
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.89 E-value=2.6e-21 Score=191.93 Aligned_cols=314 Identities=18% Similarity=0.222 Sum_probs=218.3
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH-hhcC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSG 108 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~-~~~~ 108 (437)
..+..+..++.++.+.+.+++.|.||+|||+...-.++....... ....+++--|+|--|..++++... .+..
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~ 246 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGES 246 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHHHHHHHHHHHhccc
Confidence 467889999999999999999999999999875444555554433 566788899999888888876543 3444
Q ss_pred CCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccc-ccccccHHHHHHHHHhCCc
Q 013727 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR-LLNDDFEKSLDEILNVIPR 187 (437)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~-~~~~~~~~~~~~i~~~~~~ 187 (437)
.+-.|..-....+ .......+.+||.|.|++.+..+. .+..+.+||+||+|. -.+.+|.-.+.+.+-...+
T Consensus 247 ~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~~--~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 247 LGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSDP--TLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred cCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhccCc--ccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 4434433333221 112237799999999999998754 688999999999994 3345666655555555557
Q ss_pred cceEEEEeecCchHHHHHHHHhcCCCcEEEcccccc-----------------cccCceE-----E------EEEccCCC
Q 013727 188 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS-----------------TVDTLKQ-----Q------YRFVPAKY 239 (437)
Q Consensus 188 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~-----~------~~~~~~~~ 239 (437)
+-++|+||||+.. +.+...+.+.|... ...... ..+.-.. . ......+.
T Consensus 319 ~LkvILMSAT~da--e~fs~YF~~~pvi~-i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (924)
T KOG0920|consen 319 DLKVILMSATLDA--ELFSDYFGGCPVIT-IPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEI 395 (924)
T ss_pred CceEEEeeeecch--HHHHHHhCCCceEe-ecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccc
Confidence 7889999999883 34545444433321 111100 0000000 0 00001112
Q ss_pred hHHHHHHHH----HhcCCCcEEEEecchHHHHHHHHHHHhc-------CCceEeccCCCCHHHHHHHHHHhhCCCceEEE
Q 013727 240 KDCYLVYIL----TEVSASSTMVFTRTCDATRLLALMLRNL-------GQRAIPISGHMSQSKRLGALNKFKAGECNILI 308 (437)
Q Consensus 240 ~~~~~~~~l----~~~~~~~~iVf~~s~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv 308 (437)
+..++..++ .....+.+|||.+.......+.+.|... ..-+..+|+.++..++..+...-..|..+|++
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhh
Confidence 223333333 3335688999999999999999998742 24567789999999999999988999999999
Q ss_pred EcCCCCCCCCCCCCCEEEEec--------CCC----------ChhhHHHHhhhcccCCCCceEEEEEcccc
Q 013727 309 CTDVASRGLDIPSVDMVINYD--------IPT----------NSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (437)
Q Consensus 309 ~T~~~~~Gid~~~~~~Vi~~~--------~p~----------s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~ 361 (437)
+|++++.+|.++++-.||+.+ +-. |...-.||.||+||. ..|.|+.+++...
T Consensus 476 aTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 476 ATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 999999999999999999844 322 345668999999997 6899999997543
No 118
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=3.7e-21 Score=190.20 Aligned_cols=320 Identities=17% Similarity=0.148 Sum_probs=211.3
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
..|. .|+++|.-.--.+. +.-+..+.||+|||+++.+|++...+ .+..+.|++|+..||.|-++.+..
T Consensus 78 ~lGm-~~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al---------~G~~VhvvT~ndyLA~RD~e~m~~ 145 (913)
T PRK13103 78 VMGM-RHFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNAL---------SGKGVHVVTVNDYLARRDANWMRP 145 (913)
T ss_pred HhCC-CcchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHH
Confidence 3576 57888866555554 44789999999999999999887666 677799999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCCCC-----CCCCccEEEEccccccccc------
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKGF-----SLGTLKYLVLDEADRLLND------ 172 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~~~-----~~~~~~~vViDE~h~~~~~------ 172 (437)
+...+++++.++.++.+.......+. ++|+++|..-| .++|..+-.+ -...+.++||||+|.++=+
T Consensus 146 l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPL 223 (913)
T PRK13103 146 LYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPL 223 (913)
T ss_pred HhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCce
Confidence 99999999999988877665555544 89999998876 4444433211 2377899999999964210
Q ss_pred ----------ccHHHHHHHHHhCCc--------------------c----------------------------------
Q 013727 173 ----------DFEKSLDEILNVIPR--------------------M---------------------------------- 188 (437)
Q Consensus 173 ----------~~~~~~~~i~~~~~~--------------------~---------------------------------- 188 (437)
.....+..+...+.. .
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~ 303 (913)
T PRK13103 224 IISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHN 303 (913)
T ss_pred eecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhh
Confidence 011111111111100 0
Q ss_pred --------------------------------------------------------------------------------
Q 013727 189 -------------------------------------------------------------------------------- 188 (437)
Q Consensus 189 -------------------------------------------------------------------------------- 188 (437)
T Consensus 304 ~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~ 383 (913)
T PRK13103 304 LGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRL 383 (913)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHh
Confidence
Q ss_pred -ceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHH--hcCCCcEEEEecchHH
Q 013727 189 -RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDA 265 (437)
Q Consensus 189 -~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~iVf~~s~~~ 265 (437)
..+-+||+|.......+...+..+...+.........+.- ...+.+...+...+..-+. ...+.|+||-+.|++.
T Consensus 384 Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~--d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 384 YNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFN--DLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred cchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCC--CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 0122344444333333333332222222111111111111 1122222333333333333 2368999999999999
Q ss_pred HHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCC-------------------------
Q 013727 266 TRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP------------------------- 320 (437)
Q Consensus 266 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~------------------------- 320 (437)
++.++..|+..+++..+++......|-.-+-+.=+ .-.|.|||+|+++|.|+.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 99999999999999988888755444333322222 337999999999999994
Q ss_pred -------CC-----CEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccH
Q 013727 321 -------SV-----DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (437)
Q Consensus 321 -------~~-----~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 362 (437)
.+ =+||-...+.|..-=.|..||+||.|.+|.+..|++-.|.
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 11 2788888999998889999999999999999988876553
No 119
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.89 E-value=4.9e-21 Score=185.81 Aligned_cols=161 Identities=20% Similarity=0.217 Sum_probs=117.1
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh-cC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG-SG 108 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~-~~ 108 (437)
.|..||++.+..+-.+..+++.|||.+|||.+-.. +++..++.. ....+++++|+++|++|+........ ..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLRes------D~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLRES------DSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHH-HHHHHHhhc------CCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 48999999999999999999999999999986433 444444433 55679999999999999987765543 22
Q ss_pred CCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcC--CCCCCCCccEEEEcccccccccccHHHHHHHHHhCC
Q 013727 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT--KGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186 (437)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~--~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~ 186 (437)
...+...+.|.....-+.. .-.|+|+|+-|+.+-..+... ..-...++++||+||+|.+..+.-...++.++...+
T Consensus 584 t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~ 661 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP 661 (1330)
T ss_pred ccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC
Confidence 2233333333322211111 226899999999997777652 112578899999999999888777777777777765
Q ss_pred ccceEEEEeecCchH
Q 013727 187 RMRQTYLFSATMTKK 201 (437)
Q Consensus 187 ~~~~~i~~SAT~~~~ 201 (437)
++++++|||..+.
T Consensus 662 --CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 662 --CPFLVLSATIGNP 674 (1330)
T ss_pred --CCeeEEecccCCH
Confidence 6799999998764
No 120
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.89 E-value=8.3e-21 Score=173.84 Aligned_cols=108 Identities=23% Similarity=0.399 Sum_probs=100.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecC-
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI- 330 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~- 330 (437)
.+.+++|-+=|++.|+.+.++|...|+++..+|++...-+|.+++.+++.|.++|||.-+.+-+|+|+|.|..|.++|.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDAD 524 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 524 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecC
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred ----CCChhhHHHHhhhcccCCCCceEEEEEccc
Q 013727 331 ----PTNSKDYIHRVGRTARAGRTGVAISLVNQY 360 (437)
Q Consensus 331 ----p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~ 360 (437)
..|-.+++|-+|||.|. -.|.++++.+.-
T Consensus 525 KeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred ccccccccchHHHHHHHHhhc-cCCeEEEEchhh
Confidence 46888999999999995 579999998653
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.89 E-value=5.7e-21 Score=190.82 Aligned_cols=142 Identities=22% Similarity=0.291 Sum_probs=125.0
Q ss_pred HHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCC
Q 013727 241 DCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLD 318 (437)
Q Consensus 241 ~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid 318 (437)
...+...+... .+.++||||++.+.++.+++.|...|+++..+|+++++.+|..++..|+.|+..|+|||+.+++|+|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 33444444332 5678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecC-----CCChhhHHHHhhhcccCCCCceEEEEEcc---------ccHHHHHHHHHHhCCCCCCCCCCH
Q 013727 319 IPSVDMVINYDI-----PTNSKDYIHRVGRTARAGRTGVAISLVNQ---------YELEWYLQIEKLIGKKLPEFPAEE 383 (437)
Q Consensus 319 ~~~~~~Vi~~~~-----p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~ 383 (437)
+|++++||++|. |.+...|+||+||+||. ..|.++++++. .+.....+++..++.+....|...
T Consensus 512 lp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 512 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred ccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 999999999885 78999999999999996 78999999983 567778888888999888887654
No 122
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.88 E-value=8.2e-21 Score=164.16 Aligned_cols=187 Identities=39% Similarity=0.539 Sum_probs=150.1
Q ss_pred hCCCCCChHHHHHHHHhhhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 103 (437)
.+++..|+++|.++++.+... +.+++.++||+|||.+++.+++..+... ....++|++|+..++.|+...+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-------~~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-------KGKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-------CCCcEEEEeCCHHHHHHHHHHHH
Confidence 467788999999999999998 9999999999999998888888776542 24579999999999999999999
Q ss_pred HhhcCCCcEEEEEEcCCChHHHHHHhCCCC-cEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHH
Q 013727 104 ALGSGISLRCAVLVGGVDMMQQTLALGKRP-HIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (437)
Q Consensus 104 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~ 182 (437)
.+............++............+. +++++|++.+.+.+.... .....++++|+||+|++....+...+..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 887654434444555555444444454445 999999999988887644 467788999999999887657888888888
Q ss_pred HhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcc
Q 013727 183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA 219 (437)
Q Consensus 183 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 219 (437)
..++...+++++|||++.........+......+...
T Consensus 155 ~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 155 KLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred HhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 8887788899999999998888888887766655544
No 123
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.2e-21 Score=177.50 Aligned_cols=311 Identities=20% Similarity=0.238 Sum_probs=208.7
Q ss_pred CChHHHHHHHHhhhcC---CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 30 TPSKIQAEAIPHALEG---KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~---~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
.++|||.+++..+..+ ++-++..|+|+|||++-+.++.. -..++||+|.+.--++||..+|..|.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t------------ikK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT------------IKKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee------------ecccEEEEecCccCHHHHHHHHHhhc
Confidence 5899999999998754 67899999999999875433221 34569999999999999999999998
Q ss_pred cCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcC----C---CCCCCCccEEEEcccccccccccHHHHH
Q 013727 107 SGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT----K---GFSLGTLKYLVLDEADRLLNDDFEKSLD 179 (437)
Q Consensus 107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~----~---~~~~~~~~~vViDE~h~~~~~~~~~~~~ 179 (437)
.--+-.++.++.+... ....++.|+|+|+.++..--.+. + .+.-..++++++||+|.+-...|+..+.
T Consensus 370 ti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 7656666667665432 33457899999997763211100 0 0123458899999999887777777766
Q ss_pred HHHHhCCccceEEEEeecCchHHHHHHHHh-cCCCc----------------EEEcccccc-----------cccCce--
Q 013727 180 EILNVIPRMRQTYLFSATMTKKVKKLQRAC-LKNPV----------------KIEAASKYS-----------TVDTLK-- 229 (437)
Q Consensus 180 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~-~~~~~----------------~~~~~~~~~-----------~~~~~~-- 229 (437)
-+...+ .+++|||+-.+-+.+..+. +-.|. .+.....+. ....-.
T Consensus 445 iv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 665543 5899999865433222111 00010 011100000 000001
Q ss_pred EEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhC-CCceEEE
Q 013727 230 QQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA-GECNILI 308 (437)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv 308 (437)
-.|...|+....+-.+--..+..+.++|||..++-...+++-.|.+ ..+.|..++.+|.++++.|+- ..++-+.
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEE
Confidence 1122223333332222222234789999999998888888766643 457889999999999999985 5677888
Q ss_pred EcCCCCCCCCCCCCCEEEEecCC-CChhhHHHHhhhcccCCC------CceEEEEEccccHHHHHH
Q 013727 309 CTDVASRGLDIPSVDMVINYDIP-TNSKDYIHRVGRTARAGR------TGVAISLVNQYELEWYLQ 367 (437)
Q Consensus 309 ~T~~~~~Gid~~~~~~Vi~~~~p-~s~~~~~Q~~GR~~R~g~------~g~~i~~~~~~~~~~~~~ 367 (437)
...+....+|+|.++++|+.+.. -|...-.||+||..|+.+ ....+++++.+..+.+..
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YS 660 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYS 660 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhh
Confidence 88899999999999999988765 356677999999999843 245677787766655443
No 124
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=2.4e-20 Score=174.80 Aligned_cols=310 Identities=19% Similarity=0.265 Sum_probs=204.8
Q ss_pred CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-H
Q 013727 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE-A 104 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~-~ 104 (437)
..+......+.+.+..+..++.+++.+.||||||.. +.+++.+..=. ....+-+.-|.|.-|..++.+.. +
T Consensus 352 rq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edGY~----~~GmIGcTQPRRvAAiSVAkrVa~E 423 (1042)
T KOG0924|consen 352 RQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDGYA----DNGMIGCTQPRRVAAISVAKRVAEE 423 (1042)
T ss_pred HhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhcccc----cCCeeeecCchHHHHHHHHHHHHHH
Confidence 344456778888888888899999999999999986 34444443211 23345666799988888876654 4
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccc-ccccccHH-HHHHHH
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR-LLNDDFEK-SLDEIL 182 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~-~~~~~~~~-~~~~i~ 182 (437)
++..+|-.|....-= .........|-+.|.+.|++-...+. .+.+++.||+||||. .++.+..- .++.++
T Consensus 424 M~~~lG~~VGYsIRF------EdvT~~~T~IkymTDGiLLrEsL~d~--~L~kYSviImDEAHERslNtDilfGllk~~l 495 (1042)
T KOG0924|consen 424 MGVTLGDTVGYSIRF------EDVTSEDTKIKYMTDGILLRESLKDR--DLDKYSVIIMDEAHERSLNTDILFGLLKKVL 495 (1042)
T ss_pred hCCccccccceEEEe------eecCCCceeEEEeccchHHHHHhhhh--hhhheeEEEechhhhcccchHHHHHHHHHHH
Confidence 544444333222110 11112346788999999987655544 688899999999994 22222222 223333
Q ss_pred HhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCC-ChHHHHHHHHH---hcCCCcEEE
Q 013727 183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILT---EVSASSTMV 258 (437)
Q Consensus 183 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~---~~~~~~~iV 258 (437)
.. .....+|..|||+. .+.+...+.+-|........+. +...|...+.+ +-...+...+. ....+.+||
T Consensus 496 ar-RrdlKliVtSATm~--a~kf~nfFgn~p~f~IpGRTyP----V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilI 568 (1042)
T KOG0924|consen 496 AR-RRDLKLIVTSATMD--AQKFSNFFGNCPQFTIPGRTYP----VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILI 568 (1042)
T ss_pred Hh-hccceEEEeecccc--HHHHHHHhCCCceeeecCCccc----eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEE
Confidence 32 34567999999987 4577777765665543332211 11222222221 22222222222 224577999
Q ss_pred EecchHHHHHHHHHH----Hhc------CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEe
Q 013727 259 FTRTCDATRLLALML----RNL------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 328 (437)
Q Consensus 259 f~~s~~~~~~l~~~l----~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~ 328 (437)
|....+..+..+..+ .+. +..+..+.+.++..-+.++.+....|..+++|||++++..+.+|++..||+.
T Consensus 569 fmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~ 648 (1042)
T KOG0924|consen 569 FMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDT 648 (1042)
T ss_pred ecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEec
Confidence 998876555444444 332 5578889999999999999888888999999999999999999999999985
Q ss_pred cC------------------CCChhhHHHHhhhcccCCCCceEEEEEcc
Q 013727 329 DI------------------PTNSKDYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 329 ~~------------------p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
+. |-|.+.-.||.|||||.| +|.|+-+++.
T Consensus 649 Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 649 GYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred CceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 53 456667789999999985 7999998864
No 125
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=5.2e-20 Score=180.28 Aligned_cols=318 Identities=18% Similarity=0.142 Sum_probs=211.1
Q ss_pred CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
+|+ .|++.|.-.--.+..| -+..+.||-|||+++.+|+.-..+ .+..|-|++.+.-||.-=++++..+
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL---------~GkgVhVVTvNdYLA~RDae~mg~v 142 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL---------TGKGVIVSTVNEYLAERDAEEMGKV 142 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh---------cCCceEEEecchhhhhhhHHHHHHH
Confidence 577 6899998877777766 579999999999999988865554 5666889999999999888888888
Q ss_pred hcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCCC-----CCCCCccEEEEccccccccc-------
Q 013727 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKG-----FSLGTLKYLVLDEADRLLND------- 172 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~~-----~~~~~~~~vViDE~h~~~~~------- 172 (437)
...+|+.+.++..+.........+ .+||+++|...| .++|+.+-. .-.+.+.+.|+||+|.++=.
T Consensus 143 y~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLI 220 (925)
T PRK12903 143 FNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLI 220 (925)
T ss_pred HHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccc
Confidence 888899999988876665554444 589999998776 445543221 12467889999999953210
Q ss_pred ---------ccHHHHHHHHHhCCcc-------------------------------------------------------
Q 013727 173 ---------DFEKSLDEILNVIPRM------------------------------------------------------- 188 (437)
Q Consensus 173 ---------~~~~~~~~i~~~~~~~------------------------------------------------------- 188 (437)
.+...+..+...+...
T Consensus 221 ISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd 300 (925)
T PRK12903 221 ISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKED 300 (925)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcC
Confidence 0111111221111100
Q ss_pred -------------------------------------------------------------ceEEEEeecCchHHHHHHH
Q 013727 189 -------------------------------------------------------------RQTYLFSATMTKKVKKLQR 207 (437)
Q Consensus 189 -------------------------------------------------------------~~~i~~SAT~~~~~~~~~~ 207 (437)
..+-+||+|.......+..
T Consensus 301 ~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~ 380 (925)
T PRK12903 301 VEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID 380 (925)
T ss_pred CceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH
Confidence 0233455554444444444
Q ss_pred HhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHH-h-cCCCcEEEEecchHHHHHHHHHHHhcCCceEeccC
Q 013727 208 ACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT-E-VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 285 (437)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~ 285 (437)
.+..+...+.........+... ..+.+...+...+..-+. . ..+.|+||.|.|++.++.++..|.+.|++..+++.
T Consensus 381 iY~l~Vv~IPTnkP~~R~D~~d--~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA 458 (925)
T PRK12903 381 IYNMRVNVVPTNKPVIRKDEPD--SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA 458 (925)
T ss_pred HhCCCEEECCCCCCeeeeeCCC--cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecc
Confidence 3333222221111111111111 122222233333333333 2 36889999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHhhCC-CceEEEEcCCCCCCCCCCCCC--------EEEEecCCCChhhHHHHhhhcccCCCCceEEEE
Q 013727 286 HMSQSKRLGALNKFKAG-ECNILICTDVASRGLDIPSVD--------MVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 356 (437)
Q Consensus 286 ~~~~~~r~~~~~~f~~g-~~~ilv~T~~~~~Gid~~~~~--------~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~ 356 (437)
.... ++..+-. ..| .-.|.|||+|+++|.|+.--. +||....|.|..---|..||+||.|.+|.+..|
T Consensus 459 k~~e--~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 459 KQNA--REAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cchh--hHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 6443 3333322 334 347999999999999995322 899999999988889999999999999999888
Q ss_pred EccccH
Q 013727 357 VNQYEL 362 (437)
Q Consensus 357 ~~~~~~ 362 (437)
++-.|.
T Consensus 536 lSLeD~ 541 (925)
T PRK12903 536 ISLDDQ 541 (925)
T ss_pred EecchH
Confidence 876553
No 126
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.86 E-value=2.3e-19 Score=176.83 Aligned_cols=130 Identities=19% Similarity=0.179 Sum_probs=99.7
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
..|+ .|++.|.-..-.+. +.-++.+.||.|||+++.+|+.-..+ .+..|-|++++..||.+-++.+..
T Consensus 72 ~lG~-r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL---------~G~~VhVvT~NdyLA~RD~e~m~p 139 (870)
T CHL00122 72 TLGL-RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNAL---------TGKGVHIVTVNDYLAKRDQEWMGQ 139 (870)
T ss_pred HhCC-CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHh---------cCCceEEEeCCHHHHHHHHHHHHH
Confidence 3677 58888877655554 55899999999999999998865444 566689999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCC-----CCCCCCccEEEEccccc
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADR 168 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~-----~~~~~~~~~vViDE~h~ 168 (437)
+...+|+.+.++.++.+.......+ .++|+++|...| .++|+.+- ....+.+.+.|+||+|.
T Consensus 140 vy~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDS 207 (870)
T CHL00122 140 IYRFLGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDS 207 (870)
T ss_pred HHHHcCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchh
Confidence 9999999999998887776554444 479999998655 23333221 11246688999999994
No 127
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.85 E-value=1.6e-18 Score=180.10 Aligned_cols=108 Identities=16% Similarity=0.251 Sum_probs=81.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCC--ceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCC--CCEEEE
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQ--RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS--VDMVIN 327 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~--~~~Vi~ 327 (437)
.+++++|+++|.+..+.+++.|..... ...++.-+++...|..+++.|++++-.||++|+.+++|+|+|+ ++.||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 567899999999999999999976432 1223333444456788999999988899999999999999998 578888
Q ss_pred ecCCCC-h-----------------------------hhHHHHhhhcccCCCCceEEEEEcc
Q 013727 328 YDIPTN-S-----------------------------KDYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 328 ~~~p~s-~-----------------------------~~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
...|.. + ..+.|.+||.-|...+.-+++++++
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~ 892 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDR 892 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecC
Confidence 887752 2 1337999999998765334455444
No 128
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=3e-20 Score=171.01 Aligned_cols=367 Identities=12% Similarity=0.078 Sum_probs=248.7
Q ss_pred HHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH
Q 013727 21 EACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 100 (437)
Q Consensus 21 ~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 100 (437)
+.++.+--+....+|.++++.+.+|+++.+.-.|.+||.+++.+.....+... +....+++.|+.+++....+
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-------~~s~~~~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-------HATNSLLPSEMVEHLRNGSK 349 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-------cccceecchhHHHHhhccCC
Confidence 34455655678899999999999999999999999999999988777665543 34457899999999876655
Q ss_pred HHHHhhcC---CCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHh-cCCCC--CCCCccEEEEccccccccccc
Q 013727 101 QFEALGSG---ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLT-NTKGF--SLGTLKYLVLDEADRLLNDDF 174 (437)
Q Consensus 101 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~-~~~~~--~~~~~~~vViDE~h~~~~~~~ 174 (437)
.+.-.... ..-.++-.+.+.....+......+.+++++.|+....... ++..+ .+-...++++||+|.... .+
T Consensus 350 ~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~ 428 (1034)
T KOG4150|consen 350 GQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF-PT 428 (1034)
T ss_pred ceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec-ch
Confidence 43221111 1112233344444444444555689999999998755432 22111 234456789999995443 22
Q ss_pred H----HHHHHHHHhC-----CccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCC-------
Q 013727 175 E----KSLDEILNVI-----PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK------- 238 (437)
Q Consensus 175 ~----~~~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 238 (437)
. ..+.+++..+ ..+.|++-.++|+...++.....+.-+-..+.. ...++..-.....+.+.-
T Consensus 429 ~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~--~DGSPs~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVT--IDGSPSSEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEE--ecCCCCccceEEEeCCCCCCcchhh
Confidence 2 2233333322 245688899999998887776655444332221 112223333444444431
Q ss_pred --ChHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhc----C----CceEeccCCCCHHHHHHHHHHhhCCCceE
Q 013727 239 --YKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNL----G----QRAIPISGHMSQSKRLGALNKFKAGECNI 306 (437)
Q Consensus 239 --~~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~----~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~i 306 (437)
.+......++.+. .+-++|.||.+++.|+.+....+.. + ..+..+.|+...++|+.+...+-.|+..-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 1112222233222 5678999999999998877666542 1 23566889999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEE--ccccHHHHHHHHHHhCCCCCCCCCCHH
Q 013727 307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV--NQYELEWYLQIEKLIGKKLPEFPAEEE 384 (437)
Q Consensus 307 lv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~ 384 (437)
+|+|++++-|||+..++.|++.++|.|...+.|..||+||..++..++.++ .|-|..++..-...++.+..++.++..
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~ 666 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQ 666 (1034)
T ss_pred EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecc
Confidence 999999999999999999999999999999999999999999887666555 455666666667777777777766655
Q ss_pred HHHHHHHhHHHhh
Q 013727 385 EVLLLLERVTEAK 397 (437)
Q Consensus 385 ~~~~~~~~~~~~~ 397 (437)
....+..++..+.
T Consensus 667 N~~iL~~HlQCAA 679 (1034)
T KOG4150|consen 667 NKHVLMQHLQCAA 679 (1034)
T ss_pred cHHHHHHHHhHHh
Confidence 5555555554443
No 129
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.85 E-value=3.3e-20 Score=170.37 Aligned_cols=283 Identities=18% Similarity=0.258 Sum_probs=189.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (437)
+-++-+|||.||||.- +++++. .....+|.-|.|-||..+++.++.. ++.+.+++|.......
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~---------~aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLK---------SAKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVL 254 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHh---------hhccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecC
Confidence 3466799999999976 566665 3445789999999999999999886 4778888886543222
Q ss_pred HHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCC-ccceEEEEeecCchHHHH
Q 013727 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKKVKK 204 (437)
Q Consensus 126 ~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~ 204 (437)
.. ...++.+-||.++.. --..++..|+||.++|.+.+.+-.|.+.+--+. ...+..+ -...-+-++.
T Consensus 255 ~~--~~~a~hvScTVEM~s---------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-epsvldlV~~ 322 (700)
T KOG0953|consen 255 DN--GNPAQHVSCTVEMVS---------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-EPSVLDLVRK 322 (700)
T ss_pred CC--CCcccceEEEEEEee---------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-CchHHHHHHH
Confidence 11 234778888877651 123478899999999999887777766544332 2211111 0000112222
Q ss_pred HHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCc-eEec
Q 013727 205 LQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR-AIPI 283 (437)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~-~~~~ 283 (437)
+++-. ++...+ ..|.-...-.-...+..-+.....+.++| |.|++..-.+...+.+.+.. ++++
T Consensus 323 i~k~T-Gd~vev-------------~~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVI 387 (700)
T KOG0953|consen 323 ILKMT-GDDVEV-------------REYERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVI 387 (700)
T ss_pred HHhhc-CCeeEE-------------EeecccCcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEE
Confidence 22211 111111 12222222112223334444555666666 67788888899999888776 9999
Q ss_pred cCCCCHHHHHHHHHHhhC--CCceEEEEcCCCCCCCCCCCCCEEEEecCC---------CChhhHHHHhhhcccCCC---
Q 013727 284 SGHMSQSKRLGALNKFKA--GECNILICTDVASRGLDIPSVDMVINYDIP---------TNSKDYIHRVGRTARAGR--- 349 (437)
Q Consensus 284 ~~~~~~~~r~~~~~~f~~--g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p---------~s~~~~~Q~~GR~~R~g~--- 349 (437)
.|+++++.|.+.-..|++ ++++||||||++++|+|+ +++.||+++.- .+..+..|..|||||.|.
T Consensus 388 YGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 388 YGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred ecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 999999999999999997 899999999999999999 99999998864 456778999999999974
Q ss_pred CceEEEEEccccHHHHHHHHHHhCCCCC
Q 013727 350 TGVAISLVNQYELEWYLQIEKLIGKKLP 377 (437)
Q Consensus 350 ~g~~i~~~~~~~~~~~~~l~~~~~~~~~ 377 (437)
.|.+.++... .+..+.+.+..+.+
T Consensus 467 ~G~vTtl~~e----DL~~L~~~l~~p~e 490 (700)
T KOG0953|consen 467 QGEVTTLHSE----DLKLLKRILKRPVE 490 (700)
T ss_pred CceEEEeeHh----hHHHHHHHHhCCch
Confidence 3665555433 34445555554443
No 130
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.84 E-value=3.2e-20 Score=184.46 Aligned_cols=316 Identities=21% Similarity=0.238 Sum_probs=210.2
Q ss_pred CCChHHHHHHHHhhh----cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 29 KTPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 29 ~~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.++|+||.+-+++++ .+.++++.-..|-|||+.- +..+.++..... ..+..||++|...+ ..|.++|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~-----~~gpflvvvplst~-~~W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQ-----IHGPFLVVVPLSTI-TAWEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhh-----ccCCeEEEeehhhh-HHHHHHHHH
Confidence 589999999999887 4689999999999999753 233444433221 23347899998665 457888888
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhC----C-----CCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccH
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALG----K-----RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE 175 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~----~-----~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~ 175 (437)
++ .+++.+++|..........+. . ..+++++|++.++..-.. +.--...++++||||++-+..-
T Consensus 442 w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahrLkN~~~- 514 (1373)
T KOG0384|consen 442 WT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHRLKNDES- 514 (1373)
T ss_pred Hh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---hccCCcceeeecHHhhcCchHH-
Confidence 86 578888888876554333321 2 478999999887542221 2233467899999998865321
Q ss_pred HHHHHHHHhCCccceEEEEeecCc-hHHHHHHHHhc-CCCcEEEc---------------------------------cc
Q 013727 176 KSLDEILNVIPRMRQTYLFSATMT-KKVKKLQRACL-KNPVKIEA---------------------------------AS 220 (437)
Q Consensus 176 ~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~~~~~-~~~~~~~~---------------------------------~~ 220 (437)
.+-..+..+.... .+++|+|+- +.+..+..+.. -.|..+.. ..
T Consensus 515 -~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdv 592 (1373)
T KOG0384|consen 515 -KLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDV 592 (1373)
T ss_pred -HHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhh
Confidence 2222244443333 567777753 34444332220 00000000 00
Q ss_pred ccccccCceEE-------------------------------------------------EEEcc---------------
Q 013727 221 KYSTVDTLKQQ-------------------------------------------------YRFVP--------------- 236 (437)
Q Consensus 221 ~~~~~~~~~~~-------------------------------------------------~~~~~--------------- 236 (437)
+.+.+....++ |..-+
T Consensus 593 ekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d 672 (1373)
T KOG0384|consen 593 EKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRD 672 (1373)
T ss_pred ccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchH
Confidence 00000000000 00000
Q ss_pred --------CCChHHHHHHHHHh--cCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhC---CC
Q 013727 237 --------AKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA---GE 303 (437)
Q Consensus 237 --------~~~~~~~~~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~ 303 (437)
+..|..++..+|.. ..+.++|||...+....-|+++|...+++...+.|.+..+.|..+++.|.. ..
T Consensus 673 ~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~Sdd 752 (1373)
T KOG0384|consen 673 EALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDD 752 (1373)
T ss_pred HHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCc
Confidence 01111222233332 256899999999999999999999999999999999999999999999986 45
Q ss_pred ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCce--EEEEEccc
Q 013727 304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGV--AISLVNQY 360 (437)
Q Consensus 304 ~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~--~i~~~~~~ 360 (437)
.-+|+||.+.+-|||+..+++||+||..|+|..=+|...||+|.|++-. ++-+++..
T Consensus 753 FvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 753 FVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred eEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 6789999999999999999999999999999999999999999998754 45556554
No 131
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1e-18 Score=166.89 Aligned_cols=311 Identities=19% Similarity=0.197 Sum_probs=204.2
Q ss_pred CChHHHHHHHHhhhc----CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 30 TPSKIQAEAIPHALE----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
.+.+||+..+.++.+ +.--++--.+|-|||... +..+..+..... ....+|||||. .+..||..+|..+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k-----~~~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGK-----LTKPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhccc-----ccCceEEEccH-HHHHHHHHHHHHh
Confidence 479999999999874 456789999999999753 233444433211 23569999996 6789999999998
Q ss_pred hcCCCcEEEEEEcCCCh--------HHHHH-----HhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccc
Q 013727 106 GSGISLRCAVLVGGVDM--------MQQTL-----ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND 172 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~--------~~~~~-----~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~ 172 (437)
+.. .++..+++..+. ..... .......|+++|++.+.- .. ..+.-..++++|+||.|++-++
T Consensus 278 ~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~-d~l~~~~W~y~ILDEGH~IrNp 352 (923)
T KOG0387|consen 278 WPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QG-DDLLGILWDYVILDEGHRIRNP 352 (923)
T ss_pred Ccc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cC-cccccccccEEEecCcccccCC
Confidence 755 677777776552 11111 112356799999887632 11 1133445889999999988664
Q ss_pred ccHHHHHHHHHhCCccceEEEEeecCc-hHHHHHHHHhcC-----------------CCc--------------------
Q 013727 173 DFEKSLDEILNVIPRMRQTYLFSATMT-KKVKKLQRACLK-----------------NPV-------------------- 214 (437)
Q Consensus 173 ~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~~~~~~-----------------~~~-------------------- 214 (437)
.- .+...+..++. .+-+++|+|+- +.+..+...+-. .|+
T Consensus 353 ns--~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca 429 (923)
T KOG0387|consen 353 NS--KISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCA 429 (923)
T ss_pred cc--HHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHH
Confidence 43 22222333322 33456666642 222222211100 000
Q ss_pred ------------------------------EEEcccc------------------------------------cccccCc
Q 013727 215 ------------------------------KIEAASK------------------------------------YSTVDTL 228 (437)
Q Consensus 215 ------------------------------~~~~~~~------------------------------------~~~~~~~ 228 (437)
++.+... ...+..+
T Consensus 430 ~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll 509 (923)
T KOG0387|consen 430 VALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLL 509 (923)
T ss_pred HHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccc
Confidence 0000000 0000000
Q ss_pred eE---------EE-EEccCCChHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHH-hcCCceEeccCCCCHHHHHHH
Q 013727 229 KQ---------QY-RFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLR-NLGQRAIPISGHMSQSKRLGA 295 (437)
Q Consensus 229 ~~---------~~-~~~~~~~~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~ 295 (437)
.. .+ .......+...+..++... .+.++|+|..++....-+...|. ..++.+..+.|..+...|...
T Consensus 510 ~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~l 589 (923)
T KOG0387|consen 510 DRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKL 589 (923)
T ss_pred cCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHH
Confidence 00 00 1111223555555555543 67799999999999999999998 579999999999999999999
Q ss_pred HHHhhCCCc--eEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEE
Q 013727 296 LNKFKAGEC--NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAIS 355 (437)
Q Consensus 296 ~~~f~~g~~--~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~ 355 (437)
+++|+++.. -.|++|.+.+-|+|+.+++.||.||+.|+|..=.|..-|+-|.|++-.+++
T Consensus 590 Vd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~V 651 (923)
T KOG0387|consen 590 VDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVV 651 (923)
T ss_pred HHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEE
Confidence 999997653 358889999999999999999999999999999999999999998755443
No 132
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.83 E-value=4.1e-18 Score=166.60 Aligned_cols=319 Identities=17% Similarity=0.155 Sum_probs=194.7
Q ss_pred CChHHHHHHHHhhhc---C-------CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 30 TPSKIQAEAIPHALE---G-------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~---~-------~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
.++|+|++.+..+.. | ...++.-.+|+|||+..+..+...+...+...+ ...+.||++|. .|+..|.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~--~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP--LINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc--cccccEEEccH-HHHHHHH
Confidence 489999999988864 2 246788889999998754444444433321100 22678999995 7889999
Q ss_pred HHHHHhhcCCCcEEEEEEcCCCh-HHH---HH---HhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccc
Q 013727 100 EQFEALGSGISLRCAVLVGGVDM-MQQ---TL---ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND 172 (437)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~-~~~---~~---~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~ 172 (437)
++|.++.....+....++++... ... .. ......-|++.+.+.+.++... +....++++|+||.|++-+.
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccch
Confidence 99999987556777777777664 000 01 1111345778888888665544 34667999999999976442
Q ss_pred ccHHHHHHHHHhCCccceEEEEeecCchH-HHH-----------------------------------------------
Q 013727 173 DFEKSLDEILNVIPRMRQTYLFSATMTKK-VKK----------------------------------------------- 204 (437)
Q Consensus 173 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~----------------------------------------------- 204 (437)
. ..+...+..+. .+.-|++|+|+-.. +..
T Consensus 392 ~--s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~ 468 (776)
T KOG0390|consen 392 D--SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQ 468 (776)
T ss_pred h--hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHH
Confidence 2 12222233332 23356777774211 100
Q ss_pred ----HHHHh-----------------------------------------------------------cCCCcEEEcccc
Q 013727 205 ----LQRAC-----------------------------------------------------------LKNPVKIEAASK 221 (437)
Q Consensus 205 ----~~~~~-----------------------------------------------------------~~~~~~~~~~~~ 221 (437)
+...+ +..|..+.....
T Consensus 469 eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~ 548 (776)
T KOG0390|consen 469 ELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEK 548 (776)
T ss_pred HHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccc
Confidence 00000 001111100000
Q ss_pred cccccCc------e--EEEEEccC----CChHHHHHHHHHh---cCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCC
Q 013727 222 YSTVDTL------K--QQYRFVPA----KYKDCYLVYILTE---VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGH 286 (437)
Q Consensus 222 ~~~~~~~------~--~~~~~~~~----~~~~~~~~~~l~~---~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~ 286 (437)
....... . ..+..-+. ..+...+..++.. ....++.+..|.....+.+...++-.|+.+..++|.
T Consensus 549 ~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~ 628 (776)
T KOG0390|consen 549 TEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGK 628 (776)
T ss_pred ccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCC
Confidence 0000000 0 00000000 1122233333321 122334444455555555666666679999999999
Q ss_pred CCHHHHHHHHHHhhCCCc--e-EEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEE
Q 013727 287 MSQSKRLGALNKFKAGEC--N-ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 357 (437)
Q Consensus 287 ~~~~~r~~~~~~f~~g~~--~-ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 357 (437)
++..+|..+++.|++..- . .|.+|-+.++||++-+++.||.+|+.|+|+.-.|.++|+-|.|++-.|+.+-
T Consensus 629 ~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 629 TSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred CchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 999999999999997433 3 5667779999999999999999999999999999999999999988776653
No 133
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.82 E-value=3.5e-17 Score=159.84 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=77.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhC----CCceEEEEcCCCCCCCCC--------
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA----GECNILICTDVASRGLDI-------- 319 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~ilv~T~~~~~Gid~-------- 319 (437)
.++.++|.+.|....+.+++.|+..-.-...+.|..+ .+...+++|++ |...||++|+.+.+|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 5678999999999999999999754223344455432 34568888887 478999999999999999
Q ss_pred CC--CCEEEEecCCCCh-------------------------hhHHHHhhhcccCCCC--ceEEEEEcc
Q 013727 320 PS--VDMVINYDIPTNS-------------------------KDYIHRVGRTARAGRT--GVAISLVNQ 359 (437)
Q Consensus 320 ~~--~~~Vi~~~~p~s~-------------------------~~~~Q~~GR~~R~g~~--g~~i~~~~~ 359 (437)
|+ ++.||+...|..+ ..+.|.+||.-|...+ --.+.++++
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 34 8899998887432 1447999999998765 334445444
No 134
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.1e-17 Score=164.83 Aligned_cols=130 Identities=21% Similarity=0.173 Sum_probs=100.4
Q ss_pred CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
.|+ .|+++|.-.--.+.. .-+..+.||.|||+++.+|+.-..+ .+..|-|++++..||..=++.+..+
T Consensus 82 lG~-r~ydVQliGgl~Lh~--G~IAEM~TGEGKTL~atlpaylnAL---------~GkgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHE--GQIAEMKTGEGKTLVATLPSYLNAL---------TGKGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred hCC-CcchhHHHhhhhhcC--CceeeecCCCChhHHHHHHHHHHhh---------cCCCeEEEeCCHHHHHhHHHHHHHH
Confidence 577 588888666655554 4789999999999999999877665 6666899999999999999999999
Q ss_pred hcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-----HHHHhc-CCCCCCCCccEEEEcccccc
Q 013727 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-----MDHLTN-TKGFSLGTLKYLVLDEADRL 169 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-----~~~l~~-~~~~~~~~~~~vViDE~h~~ 169 (437)
...+|+.|.++.++.+....... ..+||+++|+..| .+.+.. ........+.+.||||+|.+
T Consensus 150 y~~LGLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred HHHhCCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 88899999998887766544433 4689999999876 343332 11123577889999999954
No 135
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.82 E-value=2.2e-18 Score=171.01 Aligned_cols=318 Identities=16% Similarity=0.164 Sum_probs=205.4
Q ss_pred CChHHHHHHHHhhhc----CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 30 TPSKIQAEAIPHALE----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
.+|.||++-++++.= +-+-+++-++|-|||+..+..+...................||+||+ .|+.-|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 379999999988752 34789999999999997554333333322111112234448999996 7999999999999
Q ss_pred hcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhC
Q 013727 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~ 185 (437)
+.. +++...+|+.......+.-.++++|+|++++.+.+.... +.-..+.|+|+||-|-+-+. ...+.+..+.+
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQL 1126 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHHH
Confidence 876 666667777666555555566789999999988654332 12234789999999965442 22333333443
Q ss_pred CccceEEEEeecCch-HHHHHHHHhc---C--------------CCc---------------------------------
Q 013727 186 PRMRQTYLFSATMTK-KVKKLQRACL---K--------------NPV--------------------------------- 214 (437)
Q Consensus 186 ~~~~~~i~~SAT~~~-~~~~~~~~~~---~--------------~~~--------------------------------- 214 (437)
.... .+++|+|+.. .+.+++..+. . .|+
T Consensus 1127 ~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LR 1205 (1549)
T KOG0392|consen 1127 RANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLR 1205 (1549)
T ss_pred hhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333 4778888532 2222222110 0 000
Q ss_pred ------------E---------------------------EEccccccc-ccCc---------------eEE--EEE---
Q 013727 215 ------------K---------------------------IEAASKYST-VDTL---------------KQQ--YRF--- 234 (437)
Q Consensus 215 ------------~---------------------------~~~~~~~~~-~~~~---------------~~~--~~~--- 234 (437)
. +....+... ..+. ..+ +..
T Consensus 1206 RlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1206 RLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 0 000000000 0000 000 000
Q ss_pred --------------------ccCCChHHHHHHHHHhc----------------CCCcEEEEecchHHHHHHHHHHHh-cC
Q 013727 235 --------------------VPAKYKDCYLVYILTEV----------------SASSTMVFTRTCDATRLLALMLRN-LG 277 (437)
Q Consensus 235 --------------------~~~~~~~~~~~~~l~~~----------------~~~~~iVf~~s~~~~~~l~~~l~~-~~ 277 (437)
+....|...+..++.+. .+.++||||.-+....-+.+-|-+ .-
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 00122333444455433 235789999999999988766644 33
Q ss_pred Cce--EeccCCCCHHHHHHHHHHhhCC-CceEEE-EcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceE
Q 013727 278 QRA--IPISGHMSQSKRLGALNKFKAG-ECNILI-CTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVA 353 (437)
Q Consensus 278 ~~~--~~~~~~~~~~~r~~~~~~f~~g-~~~ilv-~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~ 353 (437)
..+ ..+.|..++.+|.++.++|+++ .+++|+ +|.+.+-|+|+.+++.||+++-.|+|..=+|.+-||+|.|++.++
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 333 4789999999999999999998 778754 556999999999999999999999999999999999999998765
Q ss_pred EEE
Q 013727 354 ISL 356 (437)
Q Consensus 354 i~~ 356 (437)
-++
T Consensus 1446 NVy 1448 (1549)
T KOG0392|consen 1446 NVY 1448 (1549)
T ss_pred eee
Confidence 443
No 136
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.1e-17 Score=151.70 Aligned_cols=328 Identities=18% Similarity=0.197 Sum_probs=207.9
Q ss_pred ccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 013727 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (437)
+.++.|..++.++.....|++.--...+..+.+-+..+..++-+++.|.||||||...--+.+...... ...
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--------~~~ 93 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--------LTG 93 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--------ccc
Confidence 447789999999999999998765567888888889888999999999999999986444455544432 233
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEc
Q 013727 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 164 (437)
+...-|.|--|-+++.+...-. ++..+--.|-.- ..+.....+.-+-+||.++|++-..++. .+..++.||+|
T Consensus 94 v~CTQprrvaamsva~RVadEM---Dv~lG~EVGysI--rfEdC~~~~T~Lky~tDgmLlrEams~p--~l~~y~viiLD 166 (699)
T KOG0925|consen 94 VACTQPRRVAAMSVAQRVADEM---DVTLGEEVGYSI--RFEDCTSPNTLLKYCTDGMLLREAMSDP--LLGRYGVIILD 166 (699)
T ss_pred eeecCchHHHHHHHHHHHHHHh---ccccchhccccc--cccccCChhHHHHHhcchHHHHHHhhCc--ccccccEEEec
Confidence 6666788877777765544321 111111111000 0001111111234678888877666655 47889999999
Q ss_pred cccc-ccc-cccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChH-
Q 013727 165 EADR-LLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD- 241 (437)
Q Consensus 165 E~h~-~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (437)
|||. .+. .-..-.++.+....| .-.+|.+|||+.. ..+...+.+.|.. .+... ......|...+.....
T Consensus 167 eahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~a--~Kfq~yf~n~Pll-~vpg~----~PvEi~Yt~e~erDylE 238 (699)
T KOG0925|consen 167 EAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLDA--EKFQRYFGNAPLL-AVPGT----HPVEIFYTPEPERDYLE 238 (699)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccch--HHHHHHhCCCCee-ecCCC----CceEEEecCCCChhHHH
Confidence 9994 222 222233445555444 6679999999764 4566655555543 33321 1122223222222222
Q ss_pred HHHHHHH---HhcCCCcEEEEecchHHHHHHHHHHHhc---------CCceEeccCCCCHHHHHHHHHHhhC-----CCc
Q 013727 242 CYLVYIL---TEVSASSTMVFTRTCDATRLLALMLRNL---------GQRAIPISGHMSQSKRLGALNKFKA-----GEC 304 (437)
Q Consensus 242 ~~~~~~l---~~~~~~~~iVf~~s~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~-----g~~ 304 (437)
..+...+ .....+.++||....++.+..++.+... ...+..+| +.+...+.+-... -..
T Consensus 239 aairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~R 314 (699)
T KOG0925|consen 239 AAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGR 314 (699)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccc
Confidence 2222222 2335688999999998888777777632 23466666 3333333322211 235
Q ss_pred eEEEEcCCCCCCCCCCCCCEEEEecC------------------CCChhhHHHHhhhcccCCCCceEEEEEccc
Q 013727 305 NILICTDVASRGLDIPSVDMVINYDI------------------PTNSKDYIHRVGRTARAGRTGVAISLVNQY 360 (437)
Q Consensus 305 ~ilv~T~~~~~Gid~~~~~~Vi~~~~------------------p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~ 360 (437)
+|+|+|++++..+.++++.+||+-++ |-|..+-.||.||+||. ..|.|+.++...
T Consensus 315 kvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred eEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 79999999999999999999998553 45777889999999996 689999999643
No 137
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.81 E-value=4.4e-18 Score=162.46 Aligned_cols=322 Identities=19% Similarity=0.264 Sum_probs=210.7
Q ss_pred CCCCCChHHHHHHHHhhh----cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 013727 26 VGWKTPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 101 (437)
-|+ ++-+||.--++++. .+-+.++.-..|-|||.. .++.++++.+... +++ -|||||+..| +.|.++
T Consensus 396 s~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-----~gp-HLVVvPsSTl-eNWlrE 466 (941)
T KOG0389|consen 396 SGI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-----PGP-HLVVVPSSTL-ENWLRE 466 (941)
T ss_pred CCC-cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC-----CCC-cEEEecchhH-HHHHHH
Confidence 355 48999999999886 345779999999999975 4455666665432 333 5899998776 668899
Q ss_pred HHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHH
Q 013727 102 FEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKS 177 (437)
Q Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~ 177 (437)
|.+|+.. +.+...+|......+.+.. ..+++|+++|+......-...+.+.-.+++++|+||+|.+-+.. ...
T Consensus 467 f~kwCPs--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeR 543 (941)
T KOG0389|consen 467 FAKWCPS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SER 543 (941)
T ss_pred HHHhCCc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHH
Confidence 9999866 7888899988665554433 23689999998755321111122345668999999999554432 223
Q ss_pred HHHHHHhCCccceEEEEeecCchH-HHHHHHHh---c-----------------------------------------CC
Q 013727 178 LDEILNVIPRMRQTYLFSATMTKK-VKKLQRAC---L-----------------------------------------KN 212 (437)
Q Consensus 178 ~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~~~---~-----------------------------------------~~ 212 (437)
+..++..- ....+++|+|+-.. +..+..+. + ..
T Consensus 544 y~~LM~I~--An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~ 621 (941)
T KOG0389|consen 544 YKHLMSIN--ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMK 621 (941)
T ss_pred HHHhcccc--ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhh
Confidence 34333332 33457777774211 11100000 0 00
Q ss_pred Cc------------------EEEcc----------------------ccccc--ccC----------------ceEEE--
Q 013727 213 PV------------------KIEAA----------------------SKYST--VDT----------------LKQQY-- 232 (437)
Q Consensus 213 ~~------------------~~~~~----------------------~~~~~--~~~----------------~~~~~-- 232 (437)
|+ .+... ..... ..+ +++.|
T Consensus 622 PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~d 701 (941)
T KOG0389|consen 622 PFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTD 701 (941)
T ss_pred HHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccH
Confidence 00 00000 00000 000 00000
Q ss_pred -------------------------------------------E------Ecc----CCChHHHHHHHHHhc--CCCcEE
Q 013727 233 -------------------------------------------R------FVP----AKYKDCYLVYILTEV--SASSTM 257 (437)
Q Consensus 233 -------------------------------------------~------~~~----~~~~~~~~~~~l~~~--~~~~~i 257 (437)
. .-. ...|...+..+|... .+.++|
T Consensus 702 e~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVL 781 (941)
T KOG0389|consen 702 EKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVL 781 (941)
T ss_pred HHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEE
Confidence 0 000 011223344444433 568999
Q ss_pred EEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCC--ceEEEEcCCCCCCCCCCCCCEEEEecCCCChh
Q 013727 258 VFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE--CNILICTDVASRGLDIPSVDMVINYDIPTNSK 335 (437)
Q Consensus 258 Vf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~ 335 (437)
||..--....-+...|..+++....+.|.+.-.+|..+++.|...+ .-+|++|-+.+.|||+..+++||.+|...+|-
T Consensus 782 iFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~ 861 (941)
T KOG0389|consen 782 IFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPY 861 (941)
T ss_pred EeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCc
Confidence 9999888888899999999999999999999999999999998754 34699999999999999999999999999999
Q ss_pred hHHHHhhhcccCCCCce--EEEEEcccc
Q 013727 336 DYIHRVGRTARAGRTGV--AISLVNQYE 361 (437)
Q Consensus 336 ~~~Q~~GR~~R~g~~g~--~i~~~~~~~ 361 (437)
+=.|.--||+|.|+... ++.+++..-
T Consensus 862 dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 862 DDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred ccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 99999999999998654 445555543
No 138
>COG4889 Predicted helicase [General function prediction only]
Probab=99.80 E-value=6.3e-19 Score=169.51 Aligned_cols=326 Identities=20% Similarity=0.221 Sum_probs=190.1
Q ss_pred CccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC----CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 013727 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG----KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (437)
Q Consensus 9 ~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~----~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (437)
+|+.+.- .++...+.-..-.+|||+|+.|++...++ .+-=+.+.+|+|||++.+ -+.+.+. ..+
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala----------~~~ 208 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA----------AAR 208 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh----------hhh
Confidence 4555433 33334443344447999999999999976 234455669999999854 3444443 357
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCh-----------------------HHHHH--HhCCCCcEEEEC
Q 013727 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM-----------------------MQQTL--ALGKRPHIVVAT 139 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~-----------------------~~~~~--~~~~~~~iiv~T 139 (437)
+|+++|+.+|..|..+++..-. .++++...++++... ...+. .-..+.-||++|
T Consensus 209 iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsT 287 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFST 287 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEc
Confidence 9999999999999777665432 234444444443221 11111 122355699999
Q ss_pred chHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCC-----ccceEEEEeecCchHHHHHH--------
Q 013727 140 PGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-----RMRQTYLFSATMTKKVKKLQ-------- 206 (437)
Q Consensus 140 p~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SAT~~~~~~~~~-------- 206 (437)
++.+...-...+ .-+..+++||+||||+.........-...+..+. +....+.||||+.-.-+...
T Consensus 288 YQSl~~i~eAQe-~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~ 366 (1518)
T COG4889 288 YQSLPRIKEAQE-AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSA 366 (1518)
T ss_pred ccchHHHHHHHH-cCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccc
Confidence 999866444322 3578899999999998654221111000000000 11234678888642211111
Q ss_pred -------------------------HHhcCCCcEEEcccccccccCceEEEEEccC-CChHHHHHH-------HHHhc--
Q 013727 207 -------------------------RACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLVY-------ILTEV-- 251 (437)
Q Consensus 207 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~l~~~-- 251 (437)
.-.+-++..+....+........+.....++ .....-... +.+..
T Consensus 367 ~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~ 446 (1518)
T COG4889 367 ELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGE 446 (1518)
T ss_pred eeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccc
Confidence 1111111111111111110110011111111 111111111 11111
Q ss_pred ------------CCCcEEEEecchHHHHHHHHHHHh---------------cCCceEeccCCCCHHHHHHHHH---HhhC
Q 013727 252 ------------SASSTMVFTRTCDATRLLALMLRN---------------LGQRAIPISGHMSQSKRLGALN---KFKA 301 (437)
Q Consensus 252 ------------~~~~~iVf~~s~~~~~~l~~~l~~---------------~~~~~~~~~~~~~~~~r~~~~~---~f~~ 301 (437)
+-.++|-||.++++...+++.+.. +.+.+..+.|.|+-.+|.+.+. .|..
T Consensus 447 ~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~ 526 (1518)
T COG4889 447 DNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEP 526 (1518)
T ss_pred cccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCc
Confidence 113568899999988888776653 1334556678899988865554 4566
Q ss_pred CCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCC
Q 013727 302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG 348 (437)
Q Consensus 302 g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g 348 (437)
.+++||-....+++|+|+|.++.||++++-.|..+.+|..||+.|-.
T Consensus 527 neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 527 NECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred chheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999999999999999999999964
No 139
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.6e-18 Score=164.00 Aligned_cols=304 Identities=22% Similarity=0.298 Sum_probs=183.6
Q ss_pred HHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcC-CCCCeEEEEEcCcHHHHHHHHHHHH-HhhcCCCcEE
Q 013727 36 AEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQR-TVPAFFACVLSPTRELAIQISEQFE-ALGSGISLRC 113 (437)
Q Consensus 36 ~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~-~~~~~~~lvl~P~~~L~~q~~~~~~-~~~~~~~~~~ 113 (437)
+++.+++..+.-++|+|.||||||+. +| +-+.+..-... ...+..+=|.-|.|--|..++.+.. .++. ++-.|
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eV 336 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQ--VP--QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEV 336 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCcccc--ch--HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-Cccce
Confidence 35666666777899999999999985 22 22222211111 1124456788899877777765543 3332 33222
Q ss_pred --EEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc-cc-cHHHHHHHHHhC---C
Q 013727 114 --AVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DD-FEKSLDEILNVI---P 186 (437)
Q Consensus 114 --~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~-~~-~~~~~~~i~~~~---~ 186 (437)
.+-+.+. ......|.++|.|.|++-+..+ |.+..++.||+||||.-.- .+ ..-.+.+|.... .
T Consensus 337 sYqIRfd~t--------i~e~T~IkFMTDGVLLrEi~~D--flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 337 SYQIRFDGT--------IGEDTSIKFMTDGVLLREIEND--FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred eEEEEeccc--------cCCCceeEEecchHHHHHHHHh--HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 2223332 2235789999999999988774 5788999999999994211 11 111122222111 1
Q ss_pred c------cceEEEEeecCchHHHHHH---HHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHH---HHHHhcCCC
Q 013727 187 R------MRQTYLFSATMTKKVKKLQ---RACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV---YILTEVSAS 254 (437)
Q Consensus 187 ~------~~~~i~~SAT~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~ 254 (437)
. .-..|+||||+.-. ++. .++-..|-.+.+.....+ ...+.-...+..+...... .+-+..+.+
T Consensus 407 ke~~~~kpLKLIIMSATLRVs--DFtenk~LFpi~pPlikVdARQfP--VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G 482 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLRVS--DFTENKRLFPIPPPLIKVDARQFP--VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPG 482 (1172)
T ss_pred hhhcccCceeEEEEeeeEEec--ccccCceecCCCCceeeeecccCc--eEEEeccCCCchHHHHHHHHHHHHhhcCCCC
Confidence 1 23589999998632 222 222222333333332211 1111111122223222222 233455788
Q ss_pred cEEEEecchHHHHHHHHHHHhcCC--------------------------------------------------------
Q 013727 255 STMVFTRTCDATRLLALMLRNLGQ-------------------------------------------------------- 278 (437)
Q Consensus 255 ~~iVf~~s~~~~~~l~~~l~~~~~-------------------------------------------------------- 278 (437)
.+|||+....++..+++.|++...
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~ 562 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFA 562 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccch
Confidence 899999999999999988875300
Q ss_pred -------------------------------------------ceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCC
Q 013727 279 -------------------------------------------RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 315 (437)
Q Consensus 279 -------------------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~ 315 (437)
-|..+++-++..++.++.+.-..|..-++|+|++++.
T Consensus 563 ~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAET 642 (1172)
T KOG0926|consen 563 SLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAET 642 (1172)
T ss_pred hhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhc
Confidence 0223334456666667766667788889999999999
Q ss_pred CCCCCCCCEEEEecCC--------C----------ChhhHHHHhhhcccCCCCceEEEEEcc
Q 013727 316 GLDIPSVDMVINYDIP--------T----------NSKDYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 316 Gid~~~~~~Vi~~~~p--------~----------s~~~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
.+.+|++..||+.+.- . |.++--||.|||||.| .|.|+-+|+.
T Consensus 643 SLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 643 SLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred ccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 9999999999985543 2 3334479999999986 7999988863
No 140
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.79 E-value=1.7e-18 Score=138.91 Aligned_cols=118 Identities=37% Similarity=0.615 Sum_probs=108.1
Q ss_pred ChHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCC
Q 013727 239 YKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 316 (437)
Q Consensus 239 ~~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G 316 (437)
.+...+..++... .++++||||++...++.+++.|...+..+..+||+++..+|..++..|.++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 4566666666655 47899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEE
Q 013727 317 LDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 356 (437)
Q Consensus 317 id~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~ 356 (437)
+|+|++++||+++.|++...|.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999988877653
No 141
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.79 E-value=1.1e-17 Score=151.82 Aligned_cols=325 Identities=13% Similarity=0.153 Sum_probs=209.3
Q ss_pred CCChHHHHHHHHhhhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 29 KTPSKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 29 ~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
+.+-|+|++-+...+. |-++++.-.+|-|||+.++..+.. .. .....||+||. .+-..|++.+++|..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~y-yr---------aEwplliVcPA-svrftWa~al~r~lp 265 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARY-YR---------AEWPLLIVCPA-SVRFTWAKALNRFLP 265 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHH-Hh---------hcCcEEEEecH-HHhHHHHHHHHHhcc
Confidence 3478899999887765 678999999999999876543322 22 44558999996 456778999999875
Q ss_pred CCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCc
Q 013727 108 GISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187 (437)
Q Consensus 108 ~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~ 187 (437)
.. ..+..+.++.+... .+.....|.|.+++.+..+-.- +.-..+.+||+||+|++-+ .-....+.+...+..
T Consensus 266 s~-~pi~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~Lk~-sktkr~Ka~~dllk~ 337 (689)
T KOG1000|consen 266 SI-HPIFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHMLKD-SKTKRTKAATDLLKV 337 (689)
T ss_pred cc-cceEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhhhhc-cchhhhhhhhhHHHH
Confidence 43 22444444433211 1223356889999887543321 2345588999999996544 333445666666666
Q ss_pred cceEEEEeecCchH-------------------HHHHHHHhcCC---CcEEEcccc-----------------------c
Q 013727 188 MRQTYLFSATMTKK-------------------VKKLQRACLKN---PVKIEAASK-----------------------Y 222 (437)
Q Consensus 188 ~~~~i~~SAT~~~~-------------------~~~~~~~~~~~---~~~~~~~~~-----------------------~ 222 (437)
..++|++|+|+.-. .-.+...++.. +........ .
T Consensus 338 akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL 417 (689)
T KOG1000|consen 338 AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVL 417 (689)
T ss_pred hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999996321 01112222111 000000000 0
Q ss_pred ccccCceEEEEEc-cC---------------------C----------------ChHHHHHH-HHH-----hcCCCcEEE
Q 013727 223 STVDTLKQQYRFV-PA---------------------K----------------YKDCYLVY-ILT-----EVSASSTMV 258 (437)
Q Consensus 223 ~~~~~~~~~~~~~-~~---------------------~----------------~~~~~~~~-~l~-----~~~~~~~iV 258 (437)
...+.-.+....+ +. . .|...+.. ++. ..++.+.+|
T Consensus 418 ~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflV 497 (689)
T KOG1000|consen 418 KQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLV 497 (689)
T ss_pred hhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEE
Confidence 0001111111111 10 0 01111111 222 235678999
Q ss_pred EecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCC-CceE-EEEcCCCCCCCCCCCCCEEEEecCCCChhh
Q 013727 259 FTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG-ECNI-LICTDVASRGLDIPSVDMVINYDIPTNSKD 336 (437)
Q Consensus 259 f~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~i-lv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~ 336 (437)
||......+.+...+.+.++....+.|..+..+|....+.|+.. +..| +++-.+++.|+++...+.|++...+|++..
T Consensus 498 FaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgv 577 (689)
T KOG1000|consen 498 FAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGV 577 (689)
T ss_pred EehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999865 3444 555678999999999999999999999999
Q ss_pred HHHHhhhcccCCCCceEEEE-Ec---cccHHHHHHHHHHh
Q 013727 337 YIHRVGRTARAGRTGVAISL-VN---QYELEWYLQIEKLI 372 (437)
Q Consensus 337 ~~Q~~GR~~R~g~~g~~i~~-~~---~~~~~~~~~l~~~~ 372 (437)
++|.--|++|.|++..+.+. +. ..|...+..+.+.+
T Consensus 578 LlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 578 LLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred EEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 99999999999987544333 22 23444455555444
No 142
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.78 E-value=8.2e-19 Score=126.55 Aligned_cols=78 Identities=41% Similarity=0.722 Sum_probs=75.4
Q ss_pred HHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCC
Q 013727 271 LMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG 348 (437)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g 348 (437)
+.|+..++.+..+||+++..+|..+++.|++++..|||||+++++|+|+|++++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999999986
No 143
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.77 E-value=2.7e-17 Score=133.83 Aligned_cols=144 Identities=44% Similarity=0.576 Sum_probs=111.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (437)
+++++.+|||+|||.+++..+....... ...+++|++|++.++.|+.+.+..+... ++.+..+.+.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHH
Confidence 4689999999999999887777665541 4567999999999999999999888765 6777788887766655
Q ss_pred HHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecC
Q 013727 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 126 ~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
........+|+++|++.+........ .....+++||+||+|.+....+...............+++++|||+
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55556679999999999988776543 3466789999999998877665554333344455677899999996
No 144
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.75 E-value=3.1e-15 Score=150.99 Aligned_cols=104 Identities=23% Similarity=0.342 Sum_probs=75.6
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc-CCceEeccCCCCHHHHHHHHHHhh----CCCceEEEEcCCCCCCCCCCC--CCE
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL-GQRAIPISGHMSQSKRLGALNKFK----AGECNILICTDVASRGLDIPS--VDM 324 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~ilv~T~~~~~Gid~~~--~~~ 324 (437)
.++.++|+++|.+..+.++..|... +.. ....+. ..+..+++.|+ .++..||++|..+.+|+|+|+ ++.
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3455899999999999999998743 333 334443 24667786666 467789999999999999997 788
Q ss_pred EEEecCCCC-h-----------------------------hhHHHHhhhcccCCCCceEEEEEcc
Q 013727 325 VINYDIPTN-S-----------------------------KDYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 325 Vi~~~~p~s-~-----------------------------~~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
||....|.. + ..+.|.+||.-|...+.-+++++++
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~ 673 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDR 673 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcc
Confidence 999887752 1 1336899999998765334445444
No 145
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.74 E-value=1.9e-17 Score=141.14 Aligned_cols=153 Identities=22% Similarity=0.210 Sum_probs=101.6
Q ss_pred CChHHHHHHHHhhhc-------CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 013727 30 TPSKIQAEAIPHALE-------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~-------~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 102 (437)
+|+++|.+++..+.. .+++++.+|||||||.+++..+.. +. . ++++++|+..|++|+...+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~-l~---------~--~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILE-LA---------R--KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHH-HH---------C--EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhc-cc---------c--ceeEecCHHHHHHHHHHHH
Confidence 589999999999984 588999999999999987643333 22 2 6999999999999999999
Q ss_pred HHhhcCCCcEEEE-----------EEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCC----------CCCCCccEE
Q 013727 103 EALGSGISLRCAV-----------LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG----------FSLGTLKYL 161 (437)
Q Consensus 103 ~~~~~~~~~~~~~-----------~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~----------~~~~~~~~v 161 (437)
..+.......... ..................+++++|.+.|......... ......++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 7776442111111 0111111122233345688999999999776543211 134567899
Q ss_pred EEcccccccccccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 162 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 162 ViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
|+||||++....- +..++. .....+++||||+.
T Consensus 151 I~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred EEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 9999998765441 444444 34566899999986
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.74 E-value=1.8e-15 Score=153.82 Aligned_cols=104 Identities=23% Similarity=0.302 Sum_probs=77.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCc-eEeccCCCCHHHHHHHHHHhhCCCc-eEEEEcCCCCCCCCCCC--CCEEEE
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQR-AIPISGHMSQSKRLGALNKFKAGEC-NILICTDVASRGLDIPS--VDMVIN 327 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~ilv~T~~~~~Gid~~~--~~~Vi~ 327 (437)
.+++++||++|.+.++.+++.++..... ....++.. .+...++.|..+.- .++|+|..+++|+|+|+ ++.||.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 4458999999999999999999876553 33344443 34478888887655 89999999999999998 578899
Q ss_pred ecCCCCh------------------------------hhHHHHhhhcccCCCCceEEEEEc
Q 013727 328 YDIPTNS------------------------------KDYIHRVGRTARAGRTGVAISLVN 358 (437)
Q Consensus 328 ~~~p~s~------------------------------~~~~Q~~GR~~R~g~~g~~i~~~~ 358 (437)
...|... ..+.|.+||+-|.-.+.-++++++
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 8888531 244799999999765533444443
No 147
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=1.5e-15 Score=151.73 Aligned_cols=308 Identities=16% Similarity=0.198 Sum_probs=210.6
Q ss_pred ChHHHHHHHHhhhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHhhcC
Q 013727 31 PSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF-EALGSG 108 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~-~~~~~~ 108 (437)
..++|.++++.+.+. .++++.+|+|||||.++-++++. .....++++++|.-+.+..+++.+ ++|...
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 488999999998865 67999999999999987666654 116778999999999988766555 556666
Q ss_pred CCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHH------HHHHH
Q 013727 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKS------LDEIL 182 (437)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~------~~~i~ 182 (437)
.|+.+..++|..+...... ...+|+|+||+++-. +. ....+++.|.||.|.+.+ ..++. +..+.
T Consensus 1214 ~G~~~~~l~ge~s~~lkl~---~~~~vii~tpe~~d~-lq-----~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia 1283 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLKLL---QKGQVIISTPEQWDL-LQ-----SIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIA 1283 (1674)
T ss_pred cCceEEecCCccccchHHh---hhcceEEechhHHHH-Hh-----hhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHH
Confidence 7888888888877654433 347899999999844 32 466789999999997653 22211 45555
Q ss_pred HhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHH--------HHHHHH-hcCC
Q 013727 183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY--------LVYILT-EVSA 253 (437)
Q Consensus 183 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~-~~~~ 253 (437)
..+.++.+++.+|..+.+.-.. .+......++....... ..+......+....-... ...+.. ...+
T Consensus 1284 ~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~-~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~ 1359 (1674)
T KOG0951|consen 1284 SQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRP-VPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNR 1359 (1674)
T ss_pred HHHHhheeEEEeehhhccchhh---ccccccceeecCcccCC-CceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCC
Confidence 5555667789998887764322 23333333444433332 222223333332221111 111111 2367
Q ss_pred CcEEEEecchHHHHHHHHHHHhc----------------------CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC
Q 013727 254 SSTMVFTRTCDATRLLALMLRNL----------------------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311 (437)
Q Consensus 254 ~~~iVf~~s~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 311 (437)
.+++||+++++.|..++..+-.. ..+..+-|.+++..+..-+-..|..|.+.|+|...
T Consensus 1360 k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~ 1439 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSR 1439 (1674)
T ss_pred CCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEc
Confidence 88999999999998877654221 22333348889999988899999999999998887
Q ss_pred CCCCCCCCCCCCEEEEec-----------CCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHH
Q 013727 312 VASRGLDIPSVDMVINYD-----------IPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQ 367 (437)
Q Consensus 312 ~~~~Gid~~~~~~Vi~~~-----------~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~ 367 (437)
- ..|+-. ..+.||..+ .+.+..++.|+.|++.| .|.|+.++......++++
T Consensus 1440 ~-~~~~~~-~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1440 D-CYGTKL-KAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred c-cccccc-cceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHH
Confidence 6 788777 345555433 34567889999999988 589999999888777663
No 148
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=8.9e-16 Score=153.07 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=90.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCC--------CCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP--------SVD 323 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~--------~~~ 323 (437)
.+.|+||-+.|++.++.++..|...|++..+++......|-.-+-+.=+.| .|.|||+|+++|.|+. +==
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL 704 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGL 704 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCC
Confidence 789999999999999999999999999999998875544443333333334 7999999999999996 223
Q ss_pred EEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccH
Q 013727 324 MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (437)
Q Consensus 324 ~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 362 (437)
+||....+.|..--.|..||+||.|.+|.+..|++-.|.
T Consensus 705 ~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 705 AIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred EEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 788899999999999999999999999999888876553
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=2.7e-14 Score=145.40 Aligned_cols=74 Identities=20% Similarity=0.100 Sum_probs=61.8
Q ss_pred CCCCCChHHHHHHHHhhh----cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 013727 26 VGWKTPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 101 (437)
++|..++|.|.+.+..+. .+.++++.+|||+|||++.+.+++.+....+ ...+++|++.|..-..|..++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~------~~~kIiy~sRThsQl~q~i~E 79 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP------EVRKIIYASRTHSQLEQATEE 79 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc------ccccEEEEcccchHHHHHHHH
Confidence 678777999999887766 4689999999999999999999999876532 335789999998888888888
Q ss_pred HHHh
Q 013727 102 FEAL 105 (437)
Q Consensus 102 ~~~~ 105 (437)
+++.
T Consensus 80 lk~~ 83 (705)
T TIGR00604 80 LRKL 83 (705)
T ss_pred HHhh
Confidence 8874
No 150
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.68 E-value=2e-14 Score=142.63 Aligned_cols=135 Identities=15% Similarity=0.089 Sum_probs=92.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHH-
Q 013727 49 IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL- 127 (437)
Q Consensus 49 lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 127 (437)
+..+.+|||||.+|+-.+-..+. .+..+||++|...|..|+.+.|+..+.. ..+..++++.+..+...
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~---------~Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR---------AGRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRR 232 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH---------cCCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHH
Confidence 33444699999999877766665 6778999999999999999999987632 45677888776554333
Q ss_pred --Hh-CCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccc-c-----cHHHHHHHHHhCCccceEEEEeecC
Q 013727 128 --AL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-D-----FEKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 128 --~~-~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~-~-----~~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
.. ....+|||+|-..++ ..+.++++||+||-|.-.-. + ....+...... ..+..+|+.|||+
T Consensus 233 w~~~~~G~~~IViGtRSAvF--------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaTP 303 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAVF--------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHAR 303 (665)
T ss_pred HHHHhCCCCcEEEEcceeEE--------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCCC
Confidence 22 345799999954432 26888999999999943221 1 11223322222 3456799999998
Q ss_pred chHHH
Q 013727 199 TKKVK 203 (437)
Q Consensus 199 ~~~~~ 203 (437)
+-+..
T Consensus 304 Sles~ 308 (665)
T PRK14873 304 TAEAQ 308 (665)
T ss_pred CHHHH
Confidence 75543
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.65 E-value=6.7e-16 Score=112.70 Aligned_cols=81 Identities=47% Similarity=0.820 Sum_probs=77.2
Q ss_pred HHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccC
Q 013727 268 LLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARA 347 (437)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 347 (437)
.+++.|+..++.+..+||+++..+|..++..|+++...+||+|+++++|+|+|.+++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 013727 348 G 348 (437)
Q Consensus 348 g 348 (437)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 152
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.61 E-value=6.5e-15 Score=144.49 Aligned_cols=314 Identities=18% Similarity=0.228 Sum_probs=195.5
Q ss_pred CChHHHHHHHHhhhc----CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 30 TPSKIQAEAIPHALE----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
.+.+||..-+.++.+ +-+-++.-.+|-|||... +..+.++.+.... .++ .+|+||+..|.+ |..+|..+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~~----~GP-~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQM----QGP-FLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHccc----CCC-eEEeccccccCC-chhhcccc
Confidence 689999999998875 246788999999999864 4456666665432 333 689999988876 67777777
Q ss_pred hcCCCcEEEEEEcCCChHH--HHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHH
Q 013727 106 GSGISLRCAVLVGGVDMMQ--QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~ 183 (437)
+.. +......|...... .......+.+|+++|++.+.. ....+.--++.++||||.|+|-... ..+...+.
T Consensus 467 aPS--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~ 539 (1157)
T KOG0386|consen 467 APS--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLN 539 (1157)
T ss_pred ccc--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccchh--hHHHHHhh
Confidence 643 44433444322211 122223578999999987754 1111222346789999999875521 11111111
Q ss_pred hCCccceEEEEeecCchH-------------------HHHHHHHhc----------------------------------
Q 013727 184 VIPRMRQTYLFSATMTKK-------------------VKKLQRACL---------------------------------- 210 (437)
Q Consensus 184 ~~~~~~~~i~~SAT~~~~-------------------~~~~~~~~~---------------------------------- 210 (437)
..-....-+++|+|+... ...+..|+.
T Consensus 540 t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLR 619 (1157)
T KOG0386|consen 540 THYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLR 619 (1157)
T ss_pred ccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHH
Confidence 100111122333331100 000000000
Q ss_pred ----------------------------------CCCcEEEcc---cc-cc-----------------cccCceEEE---
Q 013727 211 ----------------------------------KNPVKIEAA---SK-YS-----------------TVDTLKQQY--- 232 (437)
Q Consensus 211 ----------------------------------~~~~~~~~~---~~-~~-----------------~~~~~~~~~--- 232 (437)
..+...... .. .. ...++...+
T Consensus 620 RlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~ 699 (1157)
T KOG0386|consen 620 RLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLH 699 (1157)
T ss_pred hhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccc
Confidence 000000000 00 00 000000000
Q ss_pred ----EEccCCChHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCc--
Q 013727 233 ----RFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC-- 304 (437)
Q Consensus 233 ----~~~~~~~~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-- 304 (437)
..+....+..++..++-+. .+++++.||.......-+..+|.-.++....+.|....++|...+..|.....
T Consensus 700 ~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~y 779 (1157)
T KOG0386|consen 700 YDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPY 779 (1157)
T ss_pred cChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCce
Confidence 1111233445555555443 57889999999999999999999889999999999999999999999987543
Q ss_pred -eEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEE
Q 013727 305 -NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 357 (437)
Q Consensus 305 -~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 357 (437)
.+|.+|.+.+.|+|+..++.||.||..|++....|+--|+.|.|+...+-++.
T Consensus 780 f~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 780 FIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred eeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 46889999999999999999999999999999999999999999876554443
No 153
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.61 E-value=4.1e-14 Score=142.04 Aligned_cols=318 Identities=19% Similarity=0.116 Sum_probs=179.1
Q ss_pred HHHHhCCCCCChHHHHHHHHhhhc--------CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 013727 21 EACENVGWKTPSKIQAEAIPHALE--------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (437)
Q Consensus 21 ~~l~~~g~~~~~~~Q~~~~~~~~~--------~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~ 92 (437)
+.+++.--..-+.||.+|++.+.+ |=-++-.|.||+|||++ -.-|+..+.... .+.|..|..-.|
T Consensus 399 k~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~~------~g~RfsiALGLR 471 (1110)
T TIGR02562 399 KYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDDK------QGARFAIALGLR 471 (1110)
T ss_pred hhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCCC------CCceEEEEcccc
Confidence 344433334568899999998875 11356799999999986 233444443222 566777777888
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEcCCChHH-------------------------------------------HHHHh
Q 013727 93 ELAIQISEQFEALGSGISLRCAVLVGGVDMMQ-------------------------------------------QTLAL 129 (437)
Q Consensus 93 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------------------------------~~~~~ 129 (437)
.|..|.-+.+++-..-.+-...++.|+....+ ....+
T Consensus 472 TLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l 551 (1110)
T TIGR02562 472 SLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRL 551 (1110)
T ss_pred ceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhh
Confidence 88877777776644333334444444421100 00000
Q ss_pred C--------CCCcEEEECchHHHHHHhcCC--CCCCC----CccEEEEcccccccccccHHHHHHHHHhCC-ccceEEEE
Q 013727 130 G--------KRPHIVVATPGRLMDHLTNTK--GFSLG----TLKYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLF 194 (437)
Q Consensus 130 ~--------~~~~iiv~Tp~~l~~~l~~~~--~~~~~----~~~~vViDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~ 194 (437)
. -.+.|+|||++.++....... ...+. .-+.|||||+|. ++......+..++.... -...++++
T Consensus 552 ~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHa-YD~~~~~~L~rlL~w~~~lG~~VlLm 630 (1110)
T TIGR02562 552 SLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDD-YEPEDLPALLRLVQLAGLLGSRVLLS 630 (1110)
T ss_pred ccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCcc-CCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 0 034699999999877653211 11111 124699999994 44333344455544221 23569999
Q ss_pred eecCchHHHHH-HHHh----------cCC---CcEEEccc---cc----------------------------ccccCce
Q 013727 195 SATMTKKVKKL-QRAC----------LKN---PVKIEAAS---KY----------------------------STVDTLK 229 (437)
Q Consensus 195 SAT~~~~~~~~-~~~~----------~~~---~~~~~~~~---~~----------------------------~~~~~~~ 229 (437)
|||+|+.+... ...+ .+. +..+...- .. ..+..-.
T Consensus 631 SATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~ 710 (1110)
T TIGR02562 631 SATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRL 710 (1110)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccce
Confidence 99999876542 2222 121 11111000 00 0000000
Q ss_pred EEEEEccCCCh------HHHHHHH----HHh--------c-CCCc---EEEEecchHHHHHHHHHHHhc----C--CceE
Q 013727 230 QQYRFVPAKYK------DCYLVYI----LTE--------V-SASS---TMVFTRTCDATRLLALMLRNL----G--QRAI 281 (437)
Q Consensus 230 ~~~~~~~~~~~------~~~~~~~----l~~--------~-~~~~---~iVf~~s~~~~~~l~~~l~~~----~--~~~~ 281 (437)
-.+..++.... ......+ +.. . .+.+ .+|-++++..+-.++..|-.. + +...
T Consensus 711 a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~ 790 (1110)
T TIGR02562 711 AELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLC 790 (1110)
T ss_pred EEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEE
Confidence 11122222211 0111111 110 0 1122 477788888887777777643 2 3467
Q ss_pred eccCCCCHHHHHHHHHHh----------------------hC----CCceEEEEcCCCCCCCCCCCCCEEEEecCCCChh
Q 013727 282 PISGHMSQSKRLGALNKF----------------------KA----GECNILICTDVASRGLDIPSVDMVINYDIPTNSK 335 (437)
Q Consensus 282 ~~~~~~~~~~r~~~~~~f----------------------~~----g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~ 335 (437)
++|+......|..+.+.. .+ +...|+|+|++++.|+|+ +.+.+| .-|.+..
T Consensus 791 ~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~ 867 (1110)
T TIGR02562 791 CYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMR 867 (1110)
T ss_pred EecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHH
Confidence 889998877777666443 11 466899999999999999 566655 3456799
Q ss_pred hHHHHhhhcccCCC
Q 013727 336 DYIHRVGRTARAGR 349 (437)
Q Consensus 336 ~~~Q~~GR~~R~g~ 349 (437)
..+|+.||+.|.+.
T Consensus 868 sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 868 SIIQLAGRVNRHRL 881 (1110)
T ss_pred HHHHHhhccccccc
Confidence 99999999999874
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.60 E-value=2.1e-13 Score=133.59 Aligned_cols=286 Identities=15% Similarity=0.229 Sum_probs=175.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (437)
.-.+|.+|+|||||.+.+-++-..+.. +..++|++..+++|+.++...|+..+-. +.. ........
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~--------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv--~Y~d~~~~--- 115 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKN--------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV--NYLDSDDY--- 115 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccC--------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce--eeeccccc---
Confidence 456889999999998744333332221 6778999999999999999999875321 111 11111100
Q ss_pred HHHhC-CCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHH-------HHHHHHhCCccceEEEEeec
Q 013727 126 TLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKS-------LDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 126 ~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~-------~~~i~~~~~~~~~~i~~SAT 197 (437)
.+. ...+-+++..++|.+... -.+.++++||+||+-..+..-+.+. +..+...+.....+|++-|+
T Consensus 116 --~i~~~~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ 189 (824)
T PF02399_consen 116 --IIDGRPYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDAD 189 (824)
T ss_pred --cccccccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCC
Confidence 111 135677777777755331 1466799999999997666433322 33334455567789999999
Q ss_pred CchHHHHHHHHhcCCC-cEEEcccccccccCceEEEEEcc------------------------------------CCCh
Q 013727 198 MTKKVKKLQRACLKNP-VKIEAASKYSTVDTLKQQYRFVP------------------------------------AKYK 240 (437)
Q Consensus 198 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~ 240 (437)
+....-++...+.++. +.+... .+....-........+ ....
T Consensus 190 ln~~tvdFl~~~Rp~~~i~vI~n-~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (824)
T PF02399_consen 190 LNDQTVDFLASCRPDENIHVIVN-TYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDE 268 (824)
T ss_pred CCHHHHHHHHHhCCCCcEEEEEe-eeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccch
Confidence 9998888777765432 222221 1111000000000000 0111
Q ss_pred HHHHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCC
Q 013727 241 DCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDI 319 (437)
Q Consensus 241 ~~~~~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~ 319 (437)
......++... .+.++-||++|...++.+++.......++..+++.-+..+.+ . =++++|++-|++++.|+++
T Consensus 269 ~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~----~--W~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 269 TTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVE----S--WKKYDVVIYTPVITVGLSF 342 (824)
T ss_pred hhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccc----c--ccceeEEEEeceEEEEecc
Confidence 22333333333 566777899999999999999999888898888876655332 1 2578999999999999999
Q ss_pred CCCC--EEEEecCC--C--ChhhHHHHhhhcccCCCCceEEEEEcc
Q 013727 320 PSVD--MVINYDIP--T--NSKDYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 320 ~~~~--~Vi~~~~p--~--s~~~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
...+ -++-|=.| . +..+..|++||+-.- .....+++++.
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~ 387 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDA 387 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEec
Confidence 7644 34444223 2 344689999999444 34455555543
No 155
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.57 E-value=1.8e-12 Score=134.53 Aligned_cols=310 Identities=16% Similarity=0.118 Sum_probs=174.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (437)
+..+|+..||||||++.+.. ...+.+.. ..+.+++|+.++.|-.|+.+.|..++....... ...+....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~-A~~l~~~~------~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKL-ARLLLELP------KNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHHHHH-HHHHHhcc------CCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHH
Confidence 46899999999999985443 33333332 677899999999999999999999875433221 23333333
Q ss_pred HHHhCC-CCcEEEECchHHHHHHhcCCCC-CCCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHH
Q 013727 126 TLALGK-RPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVK 203 (437)
Q Consensus 126 ~~~~~~-~~~iiv~Tp~~l~~~l~~~~~~-~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 203 (437)
...+.. ...|+|+|.+.|-......... .-.+--+||+||||+. .++..-..+...++. ...++||+||...-.
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~~-a~~~gFTGTPi~~~d 418 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALKK-AIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhcc-ceEEEeeCCcccccc
Confidence 444443 3589999999997766553111 1222236899999974 344444444445544 568999999864322
Q ss_pred HH-HHHhcCCCcEEEccccccccc-CceEEEEEc-c-----CCCh-----------------------------------
Q 013727 204 KL-QRACLKNPVKIEAASKYSTVD-TLKQQYRFV-P-----AKYK----------------------------------- 240 (437)
Q Consensus 204 ~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-----~~~~----------------------------------- 240 (437)
.- .....+.+.....-.+..... .+...|... . ....
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 22 122223322222111111111 111111110 0 0000
Q ss_pred ---H----HHHHHHHH-hcCCCcEEEEecchHHHHHHHHHHHhcCC---------c-eEec-------------cCCCCH
Q 013727 241 ---D----CYLVYILT-EVSASSTMVFTRTCDATRLLALMLRNLGQ---------R-AIPI-------------SGHMSQ 289 (437)
Q Consensus 241 ---~----~~~~~~l~-~~~~~~~iVf~~s~~~~~~l~~~l~~~~~---------~-~~~~-------------~~~~~~ 289 (437)
. ........ ...+.++++.++++..+..+.+....... . +..+ |.. ..
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LK 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HH
Confidence 0 00001111 23456788888888855444444322100 0 0000 111 12
Q ss_pred HHHHHHHHH--hhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCC----CceEEEEEccccHH
Q 013727 290 SKRLGALNK--FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR----TGVAISLVNQYELE 363 (437)
Q Consensus 290 ~~r~~~~~~--f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~----~g~~i~~~~~~~~~ 363 (437)
..+.....+ ......++||.++|+-.|+|.|.++++. +|.|.-.-.++|.+.|+.|.-. .|..+.++. -.+
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g--l~e 654 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG--LKE 654 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc--hHH
Confidence 223334444 3456789999999999999999887776 7888888899999999999732 244444444 444
Q ss_pred HHHHHHHHhCC
Q 013727 364 WYLQIEKLIGK 374 (437)
Q Consensus 364 ~~~~l~~~~~~ 374 (437)
.+.+..+.+..
T Consensus 655 ~l~~Al~~Y~~ 665 (962)
T COG0610 655 ALKKALKLYSN 665 (962)
T ss_pred HHHHHHHHhhc
Confidence 44444444433
No 156
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.56 E-value=3.5e-13 Score=127.84 Aligned_cols=104 Identities=15% Similarity=0.241 Sum_probs=89.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhC--CCceE-EEEcCCCCCCCCCCCCCEEEEe
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA--GECNI-LICTDVASRGLDIPSVDMVINY 328 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~i-lv~T~~~~~Gid~~~~~~Vi~~ 328 (437)
...+++|...-.....-+...+.+.|.....+||.....+|..+++.|.. |..+| |++-.+.+.|+|+.+.+|+|.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 45677777766777778889999999999999999999999999999974 44555 5566789999999999999999
Q ss_pred cCCCChhhHHHHhhhcccCCCCceEEE
Q 013727 329 DIPTNSKDYIHRVGRTARAGRTGVAIS 355 (437)
Q Consensus 329 ~~p~s~~~~~Q~~GR~~R~g~~g~~i~ 355 (437)
|+.|++.---|..-|.-|.|++-.++.
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEE
Confidence 999999999999999999998765543
No 157
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.55 E-value=7.6e-13 Score=125.55 Aligned_cols=116 Identities=20% Similarity=0.276 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCce-EEEEcCCCCCC
Q 013727 240 KDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN-ILICTDVASRG 316 (437)
Q Consensus 240 ~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-ilv~T~~~~~G 316 (437)
+...+..+|... .+.++|+|+..-+....+.++|...++....+.|.....+|..++.+|+..++- +|++|.+.+-|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 444455555543 578899999999999999999999999999999999999999999999987655 58899999999
Q ss_pred CCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEE
Q 013727 317 LDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAIS 355 (437)
Q Consensus 317 id~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~ 355 (437)
||+..++.||+||..|+|..-.|...|+.|.|+...+.+
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtv 1147 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTV 1147 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceee
Confidence 999999999999999999999999999999998755433
No 158
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.55 E-value=1.2e-12 Score=119.62 Aligned_cols=110 Identities=18% Similarity=0.279 Sum_probs=93.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCC-CceE-EEEcCCCCCCCCCCCCCEEEEec
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG-ECNI-LICTDVASRGLDIPSVDMVINYD 329 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~i-lv~T~~~~~Gid~~~~~~Vi~~~ 329 (437)
..-+.|||...-.....+.-.|.+.|+.|+.+.|+|++..|...++.|.+. ++.| |++-.+.+..+|+..+++|+.+|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 345778988888888888888999999999999999999999999999874 5565 66668899999999999999999
Q ss_pred CCCChhhHHHHhhhcccCCCC--ceEEEEEcccc
Q 013727 330 IPTNSKDYIHRVGRTARAGRT--GVAISLVNQYE 361 (437)
Q Consensus 330 ~p~s~~~~~Q~~GR~~R~g~~--g~~i~~~~~~~ 361 (437)
+-|++..-.|...|..|.|+. -.++.|+-...
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 999999999999999999975 35666665543
No 159
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.55 E-value=1.2e-11 Score=115.47 Aligned_cols=288 Identities=22% Similarity=0.229 Sum_probs=194.1
Q ss_pred CCCCeEEEEEcCcHHHHHHHHHHHHHhhcC-------------CCcE-------EEEEEcCCChHHHH------------
Q 013727 79 TVPAFFACVLSPTRELAIQISEQFEALGSG-------------ISLR-------CAVLVGGVDMMQQT------------ 126 (437)
Q Consensus 79 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~-------------~~~~-------~~~~~g~~~~~~~~------------ 126 (437)
+...++||||+|+|..|-.+.+.+.++... +++. ...........+..
T Consensus 34 GftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Fr 113 (442)
T PF06862_consen 34 GFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFR 113 (442)
T ss_pred CCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEE
Confidence 446889999999999999988887766533 1100 00000000000000
Q ss_pred ---------HHh---CCCCcEEEECchHHHHHHhcC----CCC-CCCCccEEEEcccccccccccHHH--HHHHHHhCCc
Q 013727 127 ---------LAL---GKRPHIVVATPGRLMDHLTNT----KGF-SLGTLKYLVLDEADRLLNDDFEKS--LDEILNVIPR 187 (437)
Q Consensus 127 ---------~~~---~~~~~iiv~Tp~~l~~~l~~~----~~~-~~~~~~~vViDE~h~~~~~~~~~~--~~~i~~~~~~ 187 (437)
..+ -..+|||||+|=-|...+... ... -++.+.++|+|.+|.++-..|... +...++..|.
T Consensus 114 lGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 114 LGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPK 193 (442)
T ss_pred EeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCC
Confidence 000 126789999998887766531 111 378899999999997666544432 2222333332
Q ss_pred ---------------------cceEEEEeecCchHHHHHHHHhcCCCc-EEEccc--c-----cccccCceEEEEEccCC
Q 013727 188 ---------------------MRQTYLFSATMTKKVKKLQRACLKNPV-KIEAAS--K-----YSTVDTLKQQYRFVPAK 238 (437)
Q Consensus 188 ---------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~--~-----~~~~~~~~~~~~~~~~~ 238 (437)
.+|+|++|+...+++..+....+.+.. .+.... . ......+.|.+...+..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 259999999999999888887555432 111111 1 12234566666655443
Q ss_pred ChH----H-------HHHHHHH-hcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceE
Q 013727 239 YKD----C-------YLVYILT-EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306 (437)
Q Consensus 239 ~~~----~-------~~~~~l~-~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~i 306 (437)
... . .+...+. ....+.+|||++|.-.--++..+|++.++....+|...+..+..++-..|..|+.+|
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 211 1 1112222 445678999999999999999999999999999999999999999999999999999
Q ss_pred EEEcC--CCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCC------CceEEEEEccccHHHHH
Q 013727 307 LICTD--VASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR------TGVAISLVNQYELEWYL 366 (437)
Q Consensus 307 lv~T~--~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~------~g~~i~~~~~~~~~~~~ 366 (437)
|+.|. -.-+-..+.++++||.|++|..+.-|...+.-.+.... ...|.++++..|.-.+.
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LE 421 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLE 421 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHH
Confidence 99998 45666889999999999999999988777655444332 46889999888765433
No 160
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.48 E-value=7.1e-12 Score=124.74 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCC--ceEEEEcCCCCC
Q 013727 240 KDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE--CNILICTDVASR 315 (437)
Q Consensus 240 ~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~ilv~T~~~~~ 315 (437)
|...+.-+|++. .+.++|||+...+..+-+..+|+-+|+..+.+.|..+-++|...+++|+... ...|++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 344444455543 5788999999999999999999999999999999999999999999998754 456889999999
Q ss_pred CCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEE
Q 013727 316 GLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 356 (437)
Q Consensus 316 Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~ 356 (437)
|||+.+++.||+||..|++.--.|.--|+.|.|+...+..+
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIY 1381 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 1381 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEE
Confidence 99999999999999999998888888888888876555433
No 161
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.46 E-value=5.5e-13 Score=103.56 Aligned_cols=137 Identities=18% Similarity=0.156 Sum_probs=81.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChH
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 123 (437)
+|+-.++-.++|+|||.-.+.-++..... .+.++|||.|||.+++.+.+.++.. ++++.. .....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t--~~~~~- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHT--NARMR- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTS----SEEEES--TTSS--
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcC----CcccCc--eeeec-
Confidence 45567889999999998766555554444 6788999999999999999888643 233221 11110
Q ss_pred HHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhC-CccceEEEEeecCchHH
Q 013727 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI-PRMRQTYLFSATMTKKV 202 (437)
Q Consensus 124 ~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~ 202 (437)
....+.-|-++|...+...+.+. ....++++||+||||- .|..-....-.+.... .....+|++|||+|...
T Consensus 68 ----~~~g~~~i~vMc~at~~~~~~~p--~~~~~yd~II~DEcH~-~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 ----THFGSSIIDVMCHATYGHFLLNP--CRLKNYDVIIMDECHF-TDPTSIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -------SSSSEEEEEHHHHHHHHHTS--SCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred ----cccCCCcccccccHHHHHHhcCc--ccccCccEEEEecccc-CCHHHHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 11234668899999988777663 3678999999999994 4432222111111111 12246999999998764
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.41 E-value=6.8e-12 Score=124.00 Aligned_cols=317 Identities=19% Similarity=0.180 Sum_probs=189.5
Q ss_pred CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
.|+ .+..+| .+-.+.-+..-+..+.||-|||+++.+|+.-..+ .+..+.+++..--|+.--++++..+
T Consensus 77 lg~-~~~dVQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL---------~gkgVhvVTvNdYLA~RDae~m~~l 144 (822)
T COG0653 77 LGM-RHFDVQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL---------AGKGVHVVTVNDYLARRDAEWMGPL 144 (822)
T ss_pred cCC-ChhhHH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhc---------CCCCcEEeeehHHhhhhCHHHHHHH
Confidence 354 345544 4555555566889999999999999988765554 5666889999999999888899988
Q ss_pred hcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCC-----CCCCCCccEEEEccccccccc-------
Q 013727 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLND------- 172 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~-----~~~~~~~~~vViDE~h~~~~~------- 172 (437)
...+++.+.....+.....+..++ .+||.++|-..| .+++..+- ......+.+.|+||+|-++=.
T Consensus 145 ~~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLi 222 (822)
T COG0653 145 YEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLI 222 (822)
T ss_pred HHHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccccee
Confidence 888899999998888776655554 489999998665 23332221 112446788999999943210
Q ss_pred ---------ccHHHHHHHHHhCCccc--------eEEE------------------------------------------
Q 013727 173 ---------DFEKSLDEILNVIPRMR--------QTYL------------------------------------------ 193 (437)
Q Consensus 173 ---------~~~~~~~~i~~~~~~~~--------~~i~------------------------------------------ 193 (437)
..+..+..+...+.... ..+.
T Consensus 223 ISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~ 302 (822)
T COG0653 223 ISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFR 302 (822)
T ss_pred eecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhc
Confidence 11222333332221110 0111
Q ss_pred -------------------------------------------------------------------EeecCchHHHHHH
Q 013727 194 -------------------------------------------------------------------FSATMTKKVKKLQ 206 (437)
Q Consensus 194 -------------------------------------------------------------------~SAT~~~~~~~~~ 206 (437)
||+|...+...+.
T Consensus 303 D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~ 382 (822)
T COG0653 303 DVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFD 382 (822)
T ss_pred CCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhh
Confidence 1111111111111
Q ss_pred HHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHH--hcCCCcEEEEecchHHHHHHHHHHHhcCCceEecc
Q 013727 207 RACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 284 (437)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~ 284 (437)
..+..+...+.........+.. ...+.....|...+...+. ...+.|+||-+.+++.++.+++.|.+.|++..++.
T Consensus 383 ~iY~l~vv~iPTnrp~~R~D~~--D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLN 460 (822)
T COG0653 383 VIYGLDVVVIPTNRPIIRLDEP--DLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLN 460 (822)
T ss_pred hccCCceeeccCCCcccCCCCc--cccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeec
Confidence 1111111111111100000000 0111112223333333332 33789999999999999999999999999998888
Q ss_pred CCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCC-----------EEEEecCCCChhhHHHHhhhcccCCCCceE
Q 013727 285 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD-----------MVINYDIPTNSKDYIHRVGRTARAGRTGVA 353 (437)
Q Consensus 285 ~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~-----------~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~ 353 (437)
......+-..+...-+ .--|-|||+|+++|.|+.--. +||--....|-.-=-|-.||+||.|..|.+
T Consensus 461 Ak~h~~EA~Iia~AG~--~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S 538 (822)
T COG0653 461 AKNHAREAEIIAQAGQ--PGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSS 538 (822)
T ss_pred cccHHHHHHHHhhcCC--CCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchh
Confidence 7766444333333222 336899999999999985221 345444444544446999999999988888
Q ss_pred EEEEccc
Q 013727 354 ISLVNQY 360 (437)
Q Consensus 354 i~~~~~~ 360 (437)
-.+++-.
T Consensus 539 ~F~lSle 545 (822)
T COG0653 539 RFYLSLE 545 (822)
T ss_pred hhhhhhH
Confidence 7766543
No 163
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.40 E-value=2.6e-11 Score=128.52 Aligned_cols=118 Identities=21% Similarity=0.281 Sum_probs=100.6
Q ss_pred ChHHHHHHHH-H--hcCCC--cEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCC--CceEEEEcC
Q 013727 239 YKDCYLVYIL-T--EVSAS--STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG--ECNILICTD 311 (437)
Q Consensus 239 ~~~~~~~~~l-~--~~~~~--~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~ilv~T~ 311 (437)
.+...+..++ . ...+. ++++|+.......-+...++..++....++|.++..+|...++.|.++ ..-+++++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 3444555555 2 22445 899999999999999999999998899999999999999999999986 455677778
Q ss_pred CCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEE
Q 013727 312 VASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 356 (437)
Q Consensus 312 ~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~ 356 (437)
+.+.|+|+...++||++|+.|++....|...|+.|.|++..+.++
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999999999999987655444
No 164
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.39 E-value=5e-12 Score=114.35 Aligned_cols=76 Identities=26% Similarity=0.128 Sum_probs=59.3
Q ss_pred CCCCCChHHHHH----HHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 013727 26 VGWKTPSKIQAE----AIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (437)
Q Consensus 26 ~g~~~~~~~Q~~----~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 101 (437)
++|. |+|.|.+ +...+..+.++++.+|||+|||+++++|++.++....... .+.+++|.++|..+.+|....
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHHHHH
Confidence 6774 7999999 5555556889999999999999999999998776532100 123799999999999888777
Q ss_pred HHHh
Q 013727 102 FEAL 105 (437)
Q Consensus 102 ~~~~ 105 (437)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7664
No 165
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.39 E-value=5e-12 Score=114.35 Aligned_cols=76 Identities=26% Similarity=0.128 Sum_probs=59.3
Q ss_pred CCCCCChHHHHH----HHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 013727 26 VGWKTPSKIQAE----AIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (437)
Q Consensus 26 ~g~~~~~~~Q~~----~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 101 (437)
++|. |+|.|.+ +...+..+.++++.+|||+|||+++++|++.++....... .+.+++|.++|..+.+|....
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHHHHH
Confidence 6774 7999999 5555556889999999999999999999998776532100 123799999999999888777
Q ss_pred HHHh
Q 013727 102 FEAL 105 (437)
Q Consensus 102 ~~~~ 105 (437)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7664
No 166
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.36 E-value=5.6e-12 Score=116.24 Aligned_cols=156 Identities=22% Similarity=0.178 Sum_probs=91.8
Q ss_pred HHHHHHHhhh-------------cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH
Q 013727 34 IQAEAIPHAL-------------EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 100 (437)
Q Consensus 34 ~Q~~~~~~~~-------------~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 100 (437)
+|.+++..++ ..+..++...+|+|||...+..+. .+...... .....+||+||. .+..||..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~---~~~~~~LIv~P~-~l~~~W~~ 75 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ---RGEKKTLIVVPS-SLLSQWKE 75 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT---SS-S-EEEEE-T-TTHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc---ccccceeEeecc-chhhhhhh
Confidence 5777777663 235789999999999987654433 33322110 012249999999 88899999
Q ss_pred HHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHH-----HHHhcCCCCCCCCccEEEEcccccccccccH
Q 013727 101 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLM-----DHLTNTKGFSLGTLKYLVLDEADRLLNDDFE 175 (437)
Q Consensus 101 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~-----~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~ 175 (437)
++.++.....+++....|...............+++|+|++.+. ..... +...++++||+||+|.+-+.. .
T Consensus 76 E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~k~~~-s 151 (299)
T PF00176_consen 76 EIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRLKNKD-S 151 (299)
T ss_dssp HHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGGTTTT-S
T ss_pred hhccccccccccccccccccccccccccccccceeeeccccccccccccccccc---cccccceeEEEeccccccccc-c
Confidence 99999865456666666655222222333456899999999987 11111 112348999999999874322 2
Q ss_pred HHHHHHHHhCCccceEEEEeecCch
Q 013727 176 KSLDEILNVIPRMRQTYLFSATMTK 200 (437)
Q Consensus 176 ~~~~~i~~~~~~~~~~i~~SAT~~~ 200 (437)
..... +..+. ....+++|||+..
T Consensus 152 ~~~~~-l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 152 KRYKA-LRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHH-HHCCC-ECEEEEE-SS-SS
T ss_pred ccccc-ccccc-cceEEeecccccc
Confidence 22333 33344 5567899999753
No 167
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=1.1e-10 Score=107.82 Aligned_cols=337 Identities=22% Similarity=0.254 Sum_probs=212.1
Q ss_pred CCChHHHHHHHHhhhcCCcEEEE-cCCCchH--HHHHHHHHHHHHHHHhhh----------------------cCCCCCe
Q 013727 29 KTPSKIQAEAIPHALEGKDLIGL-AQTGSGK--TGAFALPILQALLEIAEN----------------------QRTVPAF 83 (437)
Q Consensus 29 ~~~~~~Q~~~~~~~~~~~~~lv~-~~tGsGK--T~~~~~~~~~~l~~~~~~----------------------~~~~~~~ 83 (437)
.++|+.|.+.+..+.+.+|++.. ...+.|+ +-.|++-++.++++.... +.....+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 46999999999999999998753 3334455 446788888887753210 1233578
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCc-EEE--------EEEcC----------------------CCh--------HH
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGISL-RCA--------VLVGG----------------------VDM--------MQ 124 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~-~~~--------~~~g~----------------------~~~--------~~ 124 (437)
.|||+||+|+-|-.+...+..+..+.+- +.. .-++| .+. ..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999999988877433211 000 00111 100 01
Q ss_pred HHHHh---CCCCcEEEECchHHHHHHhcC--CC--C-CCCCccEEEEcccccccccccHHHHHHHHHhC---Ccc-----
Q 013727 125 QTLAL---GKRPHIVVATPGRLMDHLTNT--KG--F-SLGTLKYLVLDEADRLLNDDFEKSLDEILNVI---PRM----- 188 (437)
Q Consensus 125 ~~~~~---~~~~~iiv~Tp~~l~~~l~~~--~~--~-~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~---~~~----- 188 (437)
....+ ....||+||+|--|.-.+.+. +. + -++.+.++|||-+|-++...|.. +..++..+ |..
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh-l~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH-LLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHhhcCcccccCCC
Confidence 11111 136899999998876655521 11 2 26778899999999887766654 33333333 321
Q ss_pred ----------------ceEEEEeecCchHHHHHHHHhcCCCcE-EEccc--cc----ccccCceEEEEEc--cC--C---
Q 013727 189 ----------------RQTYLFSATMTKKVKKLQRACLKNPVK-IEAAS--KY----STVDTLKQQYRFV--PA--K--- 238 (437)
Q Consensus 189 ----------------~~~i~~SAT~~~~~~~~~~~~~~~~~~-~~~~~--~~----~~~~~~~~~~~~~--~~--~--- 238 (437)
+|+++||+-..+....+....+.+..- +.... .. .....+.|.+..+ .+ +
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 377788877666655555544433211 11000 00 0111111211111 11 0
Q ss_pred Ch-HHHHHHHHH---hcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC--C
Q 013727 239 YK-DCYLVYILT---EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD--V 312 (437)
Q Consensus 239 ~~-~~~~~~~l~---~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~--~ 312 (437)
.+ ...+..++- ......+|||.++.-.-.++..++++..+....+|.-.+.+.-.++-+-|-.|...+|+-|. -
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 11 111222222 22345689999999999999999999998888888888888888888899999999999997 4
Q ss_pred CCCCCCCCCCCEEEEecCCCChhhH---HHHhhhcccCCC----CceEEEEEccccHHHHH
Q 013727 313 ASRGLDIPSVDMVINYDIPTNSKDY---IHRVGRTARAGR----TGVAISLVNQYELEWYL 366 (437)
Q Consensus 313 ~~~Gid~~~~~~Vi~~~~p~s~~~~---~Q~~GR~~R~g~----~g~~i~~~~~~~~~~~~ 366 (437)
.-+-.++.+++.||.|.+|..|.-| +.+.+|+.-.|+ ...|.++++..|.-.+.
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le 674 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLE 674 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHH
Confidence 4667899999999999999998766 566677654442 24677788777755433
No 168
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.22 E-value=8.3e-10 Score=108.44 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=97.9
Q ss_pred hHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhc----------------------CCceEeccCCCCHHHHHHH
Q 013727 240 KDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNL----------------------GQRAIPISGHMSQSKRLGA 295 (437)
Q Consensus 240 ~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~ 295 (437)
+..+++.+|... -+.+.|||..|......+..+|... |.....+.|..+..+|..+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 445566666644 5789999999999998888888642 4456778899999999999
Q ss_pred HHHhhCCC----ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEE
Q 013727 296 LNKFKAGE----CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 356 (437)
Q Consensus 296 ~~~f~~g~----~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~ 356 (437)
...|++.. .-.||+|.+.+-|||+-.++.||++|..|+|.--.|.|=|+-|.|+.--|+.+
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99998732 23799999999999999999999999999999999999999999987766654
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.20 E-value=4.6e-10 Score=98.75 Aligned_cols=132 Identities=21% Similarity=0.254 Sum_probs=98.7
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
..|+ .|++.|.-++-.+..|+ ++...||-|||++..+|+....+ .+..|-|++.+..||..=++++..
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL---------~G~~V~vvT~NdyLA~RD~~~~~~ 140 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL---------QGKGVHVVTSNDYLAKRDAEEMRP 140 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT---------TSS-EEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH---------hcCCcEEEeccHHHhhccHHHHHH
Confidence 4687 69999999998887765 99999999999998887766655 677789999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHH-HHHhcCCC----C-CCCCccEEEEccccccc
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLM-DHLTNTKG----F-SLGTLKYLVLDEADRLL 170 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~-~~l~~~~~----~-~~~~~~~vViDE~h~~~ 170 (437)
+...+|+.+..+.++.+.......+ .++|+++|...|. +++..+-. . ..+.++++||||+|.++
T Consensus 141 ~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 141 FYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999999988765544444 3689999998873 34433211 1 24678999999999653
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.88 E-value=1.8e-08 Score=98.95 Aligned_cols=310 Identities=17% Similarity=0.229 Sum_probs=175.2
Q ss_pred HHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH-hhcCCCc
Q 013727 33 KIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGISL 111 (437)
Q Consensus 33 ~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~ 111 (437)
.+-..++..+.....+++.+.||.|||..+.--+++.+...... ...-+.+.-|++..+.-+++++.+ -+...+-
T Consensus 381 ~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g----~~~na~v~qprrisaisiaerva~er~e~~g~ 456 (1282)
T KOG0921|consen 381 QYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG----ASFNAVVSQPRRISAISLAERVANERGEEVGE 456 (1282)
T ss_pred HHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc----ccccceeccccccchHHHHHHHHHhhHHhhcc
Confidence 33445555555667889999999999999877788877764422 334467778888877777766532 2222111
Q ss_pred EEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc-cccHHHHHHHHH-------
Q 013727 112 RCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILN------- 183 (437)
Q Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~-~~~~~~~~~i~~------- 183 (437)
.|... ..........---|..||.+-+++.+.+ -+..+.++|+||.|..-- .+|...+.+=+.
T Consensus 457 tvgy~-----vRf~Sa~prpyg~i~fctvgvllr~~e~----glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~ 527 (1282)
T KOG0921|consen 457 TCGYN-----VRFDSATPRPYGSIMFCTVGVLLRMMEN----GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLR 527 (1282)
T ss_pred ccccc-----ccccccccccccceeeeccchhhhhhhh----cccccccccchhhhhhccchHHHHHHHHhhhccchhhh
Confidence 11110 0000000111235889999999888776 355688999999995322 333322221111
Q ss_pred ---------------hCCccceEEEEeecCchHHHHHHHHhcCCCc-EEEccc----------ccccccC-ceEEE-EEc
Q 013727 184 ---------------VIPRMRQTYLFSATMTKKVKKLQRACLKNPV-KIEAAS----------KYSTVDT-LKQQY-RFV 235 (437)
Q Consensus 184 ---------------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~-~~~~~-~~~ 235 (437)
.+..-.++.+.++|++-. .++......+. .+.... ....... ....+ ..+
T Consensus 528 v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq--~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~ 605 (1282)
T KOG0921|consen 528 VVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQ--SFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILC 605 (1282)
T ss_pred hhhhhcccchhhhhhhhccccceeeccccccHH--HHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccccccc
Confidence 111222344444444422 22211111110 000000 0000000 00000 000
Q ss_pred cCC--------------------ChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhc-------CCceEeccCCCC
Q 013727 236 PAK--------------------YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL-------GQRAIPISGHMS 288 (437)
Q Consensus 236 ~~~--------------------~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~-------~~~~~~~~~~~~ 288 (437)
+.. .....+..++...-.+.++||.+-=.....+..++... -+.....|+...
T Consensus 606 dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~ 685 (1282)
T KOG0921|consen 606 DPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLT 685 (1282)
T ss_pred ChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcc
Confidence 000 00111112222223466888888877777777776543 345677888888
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCC------------------CChhhHHHHhhhcccCCCC
Q 013727 289 QSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP------------------TNSKDYIHRVGRTARAGRT 350 (437)
Q Consensus 289 ~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p------------------~s~~~~~Q~~GR~~R~g~~ 350 (437)
..+..++.+.-..|..+++++|.++...+.+.++..||+.+.. .|....+||.||+||. ++
T Consensus 686 ~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~ 764 (1282)
T KOG0921|consen 686 SQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RP 764 (1282)
T ss_pred cHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cc
Confidence 8888888888888999999999999999998887777764432 2556779999999996 56
Q ss_pred ceEEEEEc
Q 013727 351 GVAISLVN 358 (437)
Q Consensus 351 g~~i~~~~ 358 (437)
|.|..+++
T Consensus 765 G~~f~lcs 772 (1282)
T KOG0921|consen 765 GFCFHLCS 772 (1282)
T ss_pred cccccccH
Confidence 88877774
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.86 E-value=5.1e-08 Score=99.25 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=56.3
Q ss_pred CceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCC--CCc-------e-EEEEEccccHHHHHHHHHHh
Q 013727 303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG--RTG-------V-AISLVNQYELEWYLQIEKLI 372 (437)
Q Consensus 303 ~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g--~~g-------~-~i~~~~~~~~~~~~~l~~~~ 372 (437)
..+.|++.+++.+|+|.|++-.++-+....|...-.|.+||..|.- +.| . --++++....++...|..-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999998899999999999999963 112 1 22345566677777777766
Q ss_pred CC
Q 013727 373 GK 374 (437)
Q Consensus 373 ~~ 374 (437)
..
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 44
No 172
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.73 E-value=5.7e-05 Score=73.17 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=71.8
Q ss_pred CCcEEEEecchHHHHHHHHHHHhcCCc-------eEeccCCCCHHHHHHHHHHhh----CCCceEEEEc--CCCCCCCCC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNLGQR-------AIPISGHMSQSKRLGALNKFK----AGECNILICT--DVASRGLDI 319 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~~r~~~~~~f~----~g~~~ilv~T--~~~~~Gid~ 319 (437)
.+.+++|++|.+....+.+.++..|+- .+.+-..-+ -+.++..+. .|.-.+|.|. .-+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 477999999999999999888866542 122222222 234555553 3444566555 589999999
Q ss_pred CC--CCEEEEecCCCCh------------------------h--------hHHHHhhhcccCCCCceEEEEEcc
Q 013727 320 PS--VDMVINYDIPTNS------------------------K--------DYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 320 ~~--~~~Vi~~~~p~s~------------------------~--------~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
.+ ++.|+.+++|.+- + ..-|.+|||-|..++-.+|.+++.
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 87 7889999988531 0 225999999999888777777654
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.70 E-value=1e-06 Score=86.81 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=57.7
Q ss_pred CceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCC--CCceE-----------EEEEccccHHHHHHHH
Q 013727 303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG--RTGVA-----------ISLVNQYELEWYLQIE 369 (437)
Q Consensus 303 ~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g--~~g~~-----------i~~~~~~~~~~~~~l~ 369 (437)
..+.|.+-.++-+|+|=|+|=.++-+....|..+=+|.+||+.|.. +.|.- .+++...+.++...|.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999963 23332 2456667777777777
Q ss_pred HHhCC
Q 013727 370 KLIGK 374 (437)
Q Consensus 370 ~~~~~ 374 (437)
+-+..
T Consensus 563 kEI~~ 567 (985)
T COG3587 563 KEIND 567 (985)
T ss_pred HHHHH
Confidence 66543
No 174
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.69 E-value=1.1e-07 Score=90.61 Aligned_cols=85 Identities=22% Similarity=0.178 Sum_probs=67.9
Q ss_pred HHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 013727 22 ACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (437)
Q Consensus 22 ~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 101 (437)
.+...|+.++..-|..|+..+++..-.|++||+|+|||.+... |+.++.+. ....+|+++|+..-+.|+++.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~-------~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-------HAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHh-------cCCceEEEcccchhHHHHHHH
Confidence 4456788899999999999999999999999999999987554 44444443 566799999999999999998
Q ss_pred HHHhhcCCCcEEEEEEc
Q 013727 102 FEALGSGISLRCAVLVG 118 (437)
Q Consensus 102 ~~~~~~~~~~~~~~~~g 118 (437)
+.+.+ +++.-+..
T Consensus 474 Ih~tg----LKVvRl~a 486 (935)
T KOG1802|consen 474 IHKTG----LKVVRLCA 486 (935)
T ss_pred HHhcC----ceEeeeeh
Confidence 87753 55555443
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.68 E-value=1.6e-07 Score=83.10 Aligned_cols=74 Identities=26% Similarity=0.289 Sum_probs=50.6
Q ss_pred CChHHHHHHHHhhhcCCc-EEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 30 TPSKIQAEAIPHALEGKD-LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~-~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
++++.|.+|+..++.... .+|+||+|||||.+.. .++..+...........+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368899999999999888 9999999999996543 3444442100000012677899999999999999888877
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.66 E-value=1e-08 Score=102.40 Aligned_cols=257 Identities=19% Similarity=0.181 Sum_probs=151.8
Q ss_pred ChHHHHHHHHhhhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013727 31 PSKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 109 (437)
..|.|.+.+..+.. ..++++-+|||+|||.+|-+.+...+... ++.+++|++|.++|+..-...........
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~-------p~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY-------PGSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC-------CCccEEEEcCCchhhcccccchhhhcccC
Confidence 34456555554443 36789999999999999988888776654 66889999999999988777766544434
Q ss_pred CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCC-CCCCccEEEEcccccccccccHHHHHHHHHhCC--
Q 013727 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-- 186 (437)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~-~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~-- 186 (437)
++++.-++|+...... .. ..++++|+||++.....+++... .+.+++.+|+||.|. +..+.++.++.+....+
T Consensus 1001 g~k~ie~tgd~~pd~~--~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hl-lg~~rgPVle~ivsr~n~~ 1076 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPDVK--AV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHL-LGEDRGPVLEVIVSRMNYI 1076 (1230)
T ss_pred CceeEeccCccCCChh--he-ecCceEEcccccccCccccccchhhhccccceeeccccc-ccCCCcceEEEEeeccccC
Confidence 7888888887665422 22 35889999999987766643322 478899999999994 45555555444433222
Q ss_pred -----ccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEE------EccC--CChHHHHHHHHHhcCC
Q 013727 187 -----RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYR------FVPA--KYKDCYLVYILTEVSA 253 (437)
Q Consensus 187 -----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~l~~~~~ 253 (437)
...+.+++|- ......+++++....+. ...... ..+..+...+. .++. .........+....+.
T Consensus 1077 s~~t~~~vr~~glst-a~~na~dla~wl~~~~~-~nf~~s-vrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~ 1153 (1230)
T KOG0952|consen 1077 SSQTEEPVRYLGLST-ALANANDLADWLNIKDM-YNFRPS-VRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPI 1153 (1230)
T ss_pred ccccCcchhhhhHhh-hhhccHHHHHHhCCCCc-CCCCcc-cccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCC
Confidence 2223444432 22334566665544433 211111 11111111111 1111 1123344444455577
Q ss_pred CcEEEEecchHHHHHHHHHH----HhcCCceEeccCCCCHHHHHHHHHHhhCCC
Q 013727 254 SSTMVFTRTCDATRLLALML----RNLGQRAIPISGHMSQSKRLGALNKFKAGE 303 (437)
Q Consensus 254 ~~~iVf~~s~~~~~~l~~~l----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 303 (437)
.+++||+.++.+...-+..| ....-+...++ ++..+-+.++...++..
T Consensus 1154 ~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~~ 1205 (1230)
T KOG0952|consen 1154 KPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDTN 1205 (1230)
T ss_pred CceEEEeecccccccchHhHHhhccCCCCchhccC--CCHHHHHHHHHHhcccc
Confidence 89999999987665443333 22222333343 33555566666655543
No 177
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.58 E-value=2.5e-07 Score=76.86 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=73.1
Q ss_pred cCCCcEEEEecchHHHHHHHHHHHhcCC--ceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC--CCCCCCCCCC--CCE
Q 013727 251 VSASSTMVFTRTCDATRLLALMLRNLGQ--RAIPISGHMSQSKRLGALNKFKAGECNILICTD--VASRGLDIPS--VDM 324 (437)
Q Consensus 251 ~~~~~~iVf~~s~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~--~~~~Gid~~~--~~~ 324 (437)
..++.+|||++|....+.+.+.++.... ...++.. +..++..+++.|++++-.||+++. .+++|+|+++ ++.
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 3458899999999999999999986532 1122222 356778899999999999999998 9999999997 778
Q ss_pred EEEecCCCChh------------------------------hHHHHhhhcccCCCCceEEEEEcc
Q 013727 325 VINYDIPTNSK------------------------------DYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 325 Vi~~~~p~s~~------------------------------~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
||..+.|.... ...|.+||+-|...+--++.+++.
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 99999885221 226889999998776445555544
No 178
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.55 E-value=6.5e-07 Score=76.44 Aligned_cols=63 Identities=25% Similarity=0.222 Sum_probs=44.4
Q ss_pred CChHHHHHHHHhhhcCC--cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 013727 30 TPSKIQAEAIPHALEGK--DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~--~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 101 (437)
+|++-|.+++..++... -.++.|+.|+|||.+ +..+...+.. .+.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA--------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH--------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh--------CCCeEEEECCcHHHHHHHHHh
Confidence 47899999999997543 577889999999975 3334444433 457899999998887776555
No 179
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.54 E-value=7.6e-06 Score=79.75 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=90.1
Q ss_pred CCcEEEEecchHHHHHHHHHHHhcCC------------------ceEeccCCCCHHHHHHHHHHhhCC--C-ceEEEEcC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNLGQ------------------RAIPISGHMSQSKRLGALNKFKAG--E-CNILICTD 311 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~~~------------------~~~~~~~~~~~~~r~~~~~~f~~g--~-~~ilv~T~ 311 (437)
+.++|||..+......+.+.|.+..+ ....+.|..+..+|++.+++|.+. - .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 56789999998888888888876422 234567888999999999999862 2 24788899
Q ss_pred CCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccH
Q 013727 312 VASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (437)
Q Consensus 312 ~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 362 (437)
+..-|+|+-..+.+|.+|..|++-.-.|.+-|+-|.|+...|+++-.-.|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 999999999999999999999999999999999999998888776544433
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.53 E-value=1.5e-06 Score=76.99 Aligned_cols=172 Identities=21% Similarity=0.168 Sum_probs=111.7
Q ss_pred cCCCHHHHHHHHhCCCCCChHHHHHHHHhhhc----------CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 013727 13 LGLRDELVEACENVGWKTPSKIQAEAIPHALE----------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (437)
Q Consensus 13 ~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~----------~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 82 (437)
+.||+.++ ..| .++..|.+++-.+.+ +.-+++--.||.||-....-.|++.+++ ..
T Consensus 26 ~~lp~~~~----~~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------Gr 91 (303)
T PF13872_consen 26 LHLPEEVI----DSG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------GR 91 (303)
T ss_pred cCCCHHHH----hcc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------CC
Confidence 35665444 344 378889888876652 2457888899999998866666776664 34
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCC--CCC-----
Q 013727 83 FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG--FSL----- 155 (437)
Q Consensus 83 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~--~~~----- 155 (437)
.+.|++..+..|.....+.++.++.. .+.+..+..-... ....-...|+++|+..|...-..... -.+
T Consensus 92 ~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 92 KRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred CceEEEECChhhhhHHHHHHHHhCCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 46999999999999999999988755 3333333221100 01122457999999988665422110 011
Q ss_pred ----CCccEEEEccccccccccc--------HHHHHHHHHhCCccceEEEEeecCchHHHH
Q 013727 156 ----GTLKYLVLDEADRLLNDDF--------EKSLDEILNVIPRMRQTYLFSATMTKKVKK 204 (437)
Q Consensus 156 ----~~~~~vViDE~h~~~~~~~--------~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 204 (437)
..-.+||+||||.+-+..- ...+..+.+.+|..+ ++.+|||...+...
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~N 226 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPRN 226 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCce
Confidence 1235899999998766432 234555666776655 99999997765443
No 181
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.49 E-value=1.1e-05 Score=82.54 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=55.0
Q ss_pred CCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 131 KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 131 ~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
....|+++||..|...+..+. +++..+..|||||||++....-...+..+....++..-+.+||+.+.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~r-i~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGI-IPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred hcCCEEEEechhhHhHHhcCC-CCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 346799999999977666644 68999999999999999887777777777777666666889998854
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.46 E-value=1.8e-07 Score=79.14 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=71.7
Q ss_pred CCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH-------H
Q 013727 28 WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS-------E 100 (437)
Q Consensus 28 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~-------~ 100 (437)
+...++.|..++.++...+-+++.||.|||||+.++..+++.+... .-.+++|+-|..+..+.+- +
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-------~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-------EYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-------S-SEEEEEE-S--TT----SS------
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-------CCcEEEEEecCCCCccccccCCCCHHH
Confidence 3457899999999999888899999999999999888888777652 4456788777764311110 0
Q ss_pred HHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHH
Q 013727 101 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDE 180 (437)
Q Consensus 101 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~ 180 (437)
.+.-+.....-....+.+.... ..+.....|-+..+..+ +.. .+. -.+||+|||+.+ -...+..
T Consensus 75 K~~p~~~p~~d~l~~~~~~~~~----~~~~~~~~Ie~~~~~~i-----RGr--t~~-~~~iIvDEaQN~----t~~~~k~ 138 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELFGKEKL----EELIQNGKIEIEPLAFI-----RGR--TFD-NAFIIVDEAQNL----TPEELKM 138 (205)
T ss_dssp ---TTTHHHHHHHTTTS-TTCH----HHHHHTTSEEEEEGGGG-----TT----B--SEEEEE-SGGG------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChHhH----HHHhhcCeEEEEehhhh-----cCc--ccc-ceEEEEecccCC----CHHHHHH
Confidence 0000000000000000011111 11112344666654322 212 232 378999999965 4456778
Q ss_pred HHHhCCccceEEEEe
Q 013727 181 ILNVIPRMRQTYLFS 195 (437)
Q Consensus 181 i~~~~~~~~~~i~~S 195 (437)
++..+..+.+++++.
T Consensus 139 ilTR~g~~skii~~G 153 (205)
T PF02562_consen 139 ILTRIGEGSKIIITG 153 (205)
T ss_dssp HHTTB-TT-EEEEEE
T ss_pred HHcccCCCcEEEEec
Confidence 888888777666554
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.36 E-value=4.7e-06 Score=71.14 Aligned_cols=126 Identities=19% Similarity=0.242 Sum_probs=83.3
Q ss_pred CccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhc---CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEE
Q 013727 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALE---GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (437)
Q Consensus 9 ~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~---~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (437)
.|+....|.++.=.+ ..++ ..|+.|.++...+.+ +++.+.+.-+|.|||.+ ++|++..++.+ ....+
T Consensus 4 ~w~p~~~P~wLl~E~-e~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd-------g~~Lv 73 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEI-ESNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD-------GSRLV 73 (229)
T ss_pred CCCchhChHHHHHHH-HcCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC-------CCcEE
Confidence 577777788877544 3455 599999999999986 47899999999999976 67888777753 33456
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcC-CCcEEEE--EEcCCChH--------HHHHHhCCCCcEEEECchHHHH
Q 013727 86 CVLSPTRELAIQISEQFEALGSG-ISLRCAV--LVGGVDMM--------QQTLALGKRPHIVVATPGRLMD 145 (437)
Q Consensus 86 lvl~P~~~L~~q~~~~~~~~~~~-~~~~~~~--~~g~~~~~--------~~~~~~~~~~~iiv~Tp~~l~~ 145 (437)
.+++| ++|.+|....+..-... .+-++.. +.-..... ...........|+++||+.++.
T Consensus 74 rviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 74 RVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred EEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 67777 57999998887654322 2222222 22222111 1111222356799999998754
No 184
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.35 E-value=7.5e-06 Score=81.25 Aligned_cols=142 Identities=23% Similarity=0.251 Sum_probs=85.5
Q ss_pred hHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCc
Q 013727 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISL 111 (437)
Q Consensus 32 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 111 (437)
.++|+.++..++.++-+++.|++|+|||.+. ..++..+....... ...++++++||---+..+.+.+......++.
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~~---~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPKQ---GKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhcccc---CCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 3799999999999999999999999999863 33444443321100 1257899999987777777666553322211
Q ss_pred EEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCC-----CCCCccEEEEcccccccccccHHHHHHHHHhCC
Q 013727 112 RCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF-----SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186 (437)
Q Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~-----~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~ 186 (437)
. . .......+-..|..+|+........+ ....+++|||||+-++ + ...+..++..++
T Consensus 223 ~---------~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll~al~ 284 (586)
T TIGR01447 223 A---------E-----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLLKALP 284 (586)
T ss_pred c---------h-----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHHHhcC
Confidence 0 0 00001112244544443322111101 2335789999999944 3 335667778888
Q ss_pred ccceEEEEe
Q 013727 187 RMRQTYLFS 195 (437)
Q Consensus 187 ~~~~~i~~S 195 (437)
...++|++.
T Consensus 285 ~~~rlIlvG 293 (586)
T TIGR01447 285 PNTKLILLG 293 (586)
T ss_pred CCCEEEEEC
Confidence 888877664
No 185
>PF13245 AAA_19: Part of AAA domain
Probab=98.32 E-value=2.7e-06 Score=59.91 Aligned_cols=60 Identities=32% Similarity=0.382 Sum_probs=40.6
Q ss_pred HHHhhhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 013727 38 AIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (437)
Q Consensus 38 ~~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 102 (437)
++...+. +.-++|.||+|||||.+.+-.+...+.... . .+.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~----~-~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA----D-PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc----C-CCCeEEEECCCHHHHHHHHHHH
Confidence 3443333 344566999999999775544444442111 1 2667999999999999998888
No 186
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.30 E-value=7.5e-06 Score=81.40 Aligned_cols=157 Identities=20% Similarity=0.234 Sum_probs=92.2
Q ss_pred HHHHHHHh-CCCC-CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 013727 18 ELVEACEN-VGWK-TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELA 95 (437)
Q Consensus 18 ~~~~~l~~-~g~~-~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 95 (437)
.+.+.|.. ++.. ...++|+.|+...+.++-.++.|++|+|||.+. ..++..+.+... ....++++++||.--+
T Consensus 138 ~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~~----~~~~~i~l~APTgkAA 212 (615)
T PRK10875 138 LLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLAD----GERCRIRLAAPTGKAA 212 (615)
T ss_pred HHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhcC----CCCcEEEEECCcHHHH
Confidence 34444444 2332 235899999999999999999999999999763 233333332110 1345788999998888
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCC-----CCCCccEEEEccccccc
Q 013727 96 IQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF-----SLGTLKYLVLDEADRLL 170 (437)
Q Consensus 96 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~-----~~~~~~~vViDE~h~~~ 170 (437)
..+.+.+.......++. . ... .....-..|..+|+........+ ..-.+++|||||+-++
T Consensus 213 ~rL~e~~~~~~~~~~~~-----~-----~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv- 277 (615)
T PRK10875 213 ARLTESLGKALRQLPLT-----D-----EQK----KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV- 277 (615)
T ss_pred HHHHHHHHhhhhccccc-----h-----hhh----hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-
Confidence 88877765543322210 0 000 00111234444443321111111 2334689999999944
Q ss_pred ccccHHHHHHHHHhCCccceEEEEeec
Q 013727 171 NDDFEKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 171 ~~~~~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
+ ...+..++..+++..++|++.=.
T Consensus 278 d---~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 278 D---LPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred c---HHHHHHHHHhcccCCEEEEecch
Confidence 3 44566777888888888776433
No 187
>PRK10536 hypothetical protein; Provisional
Probab=98.30 E-value=3.1e-06 Score=73.67 Aligned_cols=147 Identities=16% Similarity=0.133 Sum_probs=80.1
Q ss_pred CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH-------H
Q 013727 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ-------I 98 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q-------~ 98 (437)
.++...+..|...+.++.....+++.||+|+|||+.....+++.+... .-.++++.=|+.+..+. .
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-------~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-------DVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-------CeeEEEEeCCCCCchhhhCcCCCCH
Confidence 456668999999999999888899999999999998776666555431 33445666565432110 1
Q ss_pred HHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHH
Q 013727 99 SEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSL 178 (437)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~ 178 (437)
.+.+..|.....-....+.+. ........ .....|-|.... +++. . .+ +-++||+|||+++ -...+
T Consensus 128 ~eK~~p~~~pi~D~L~~~~~~-~~~~~~~~-~~~~~Iei~~l~----ymRG-r--tl-~~~~vIvDEaqn~----~~~~~ 193 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRLGA-SFMQYCLR-PEIGKVEIAPFA----YMRG-R--TF-ENAVVILDEAQNV----TAAQM 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhCh-HHHHHHHH-hccCcEEEecHH----HhcC-C--cc-cCCEEEEechhcC----CHHHH
Confidence 111111111000000000111 01110100 112345555532 2333 2 22 2478999999965 23577
Q ss_pred HHHHHhCCccceEEE
Q 013727 179 DEILNVIPRMRQTYL 193 (437)
Q Consensus 179 ~~i~~~~~~~~~~i~ 193 (437)
..++..++.+.++|+
T Consensus 194 k~~ltR~g~~sk~v~ 208 (262)
T PRK10536 194 KMFLTRLGENVTVIV 208 (262)
T ss_pred HHHHhhcCCCCEEEE
Confidence 888888887776554
No 188
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.30 E-value=1.4e-05 Score=81.74 Aligned_cols=128 Identities=21% Similarity=0.190 Sum_probs=78.0
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
..++ .+++.|++++..+..++-+++.|++|+|||.+. -.++..+.... ....+++++||-.-+..+.+..
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~------~~~~v~l~ApTg~AA~~L~e~~-- 388 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG------GLLPVGLAAPTGRAAKRLGEVT-- 388 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC------CCceEEEEeCchHHHHHHHHhc--
Confidence 3566 699999999999998889999999999999753 23333333210 1156888999977666443321
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcC----CCCCCCCccEEEEcccccccccccHHHHHH
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT----KGFSLGTLKYLVLDEADRLLNDDFEKSLDE 180 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~----~~~~~~~~~~vViDE~h~~~~~~~~~~~~~ 180 (437)
+... .|..+++...... ..-.....++||+||++++ + ...+..
T Consensus 389 -----g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMv-d---~~~~~~ 435 (720)
T TIGR01448 389 -----GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMM-D---TWLALS 435 (720)
T ss_pred -----CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccC-C---HHHHHH
Confidence 1111 1111111110000 0001234789999999955 3 234566
Q ss_pred HHHhCCccceEEEEe
Q 013727 181 ILNVIPRMRQTYLFS 195 (437)
Q Consensus 181 i~~~~~~~~~~i~~S 195 (437)
++..++...+++++.
T Consensus 436 Ll~~~~~~~rlilvG 450 (720)
T TIGR01448 436 LLAALPDHARLLLVG 450 (720)
T ss_pred HHHhCCCCCEEEEEC
Confidence 677777777777764
No 189
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.28 E-value=5e-06 Score=79.23 Aligned_cols=65 Identities=25% Similarity=0.211 Sum_probs=52.6
Q ss_pred CChHHHHHHHHhhhcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 013727 30 TPSKIQAEAIPHALEGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 103 (437)
.+.+-|+.|+..+...+ -.++.||+|+|||.+....+.+.+. .+.++||++||..-+..+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk---------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK---------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH---------cCCeEEEEcCchHHHHHHHHHhc
Confidence 47888999999998875 5688999999999986555554444 67789999999999888888643
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.26 E-value=1.1e-05 Score=81.13 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=53.0
Q ss_pred CChHHHHHHHHhhhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 30 TPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+++.|..++..++.. ..+++.||+|+|||.+....+ ..+.. .+.++|+++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii-~~~~~--------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELI-RQLVK--------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHH-HHHHH--------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 5799999999999876 678899999999998654433 33332 455899999999999998888876
No 191
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.25 E-value=7.5e-06 Score=81.19 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=58.2
Q ss_pred hCCCCCChHHHHHHHHhhhc----CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhh---------c--------------
Q 013727 25 NVGWKTPSKIQAEAIPHALE----GKDLIGLAQTGSGKTGAFALPILQALLEIAEN---------Q-------------- 77 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~---------~-------------- 77 (437)
.+.| +|++.|..-+..++. ..+.++..|||+|||++.+-..+++....... .
T Consensus 17 ~fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 3566 689999988877775 47899999999999998777666665432200 0
Q ss_pred -----CCC-----CCeEEEEEcCcHHHHHHHHHHHHHhhcC
Q 013727 78 -----RTV-----PAFFACVLSPTRELAIQISEQFEALGSG 108 (437)
Q Consensus 78 -----~~~-----~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 108 (437)
... ..+.+.|-.-|-.-..|+.+++++.+..
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 001 2456666666667778899999877543
No 192
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.24 E-value=3.8e-06 Score=78.91 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=67.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHH
Q 013727 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 126 (437)
-++|.|.+|||||+.++-. +..+.... .+..+++++++..|...+...+..-...
T Consensus 3 v~~I~G~aGTGKTvla~~l-~~~l~~~~------~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------ 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNL-AKELQNSE------EGKKVLYLCGNHPLRNKLREQLAKKYNP------------------ 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHH-HHHhhccc------cCCceEEEEecchHHHHHHHHHhhhccc------------------
Confidence 4789999999999875433 33331111 5667899999999999888887653200
Q ss_pred HHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccc-------ccHHHHHHHHHh
Q 013727 127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-------DFEKSLDEILNV 184 (437)
Q Consensus 127 ~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~-------~~~~~~~~i~~~ 184 (437)
......+..+..+...+.. .......+++|||||||++... .....+..++..
T Consensus 58 ----~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ----KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ----chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0012233444444443321 1124677999999999998872 123556666655
No 193
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.14 E-value=1.5e-05 Score=79.55 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=88.7
Q ss_pred CcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCC-ce-EEEEcCCCCCCCCCCCCCEEEEecCC
Q 013727 254 SSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE-CN-ILICTDVASRGLDIPSVDMVINYDIP 331 (437)
Q Consensus 254 ~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-ilv~T~~~~~Gid~~~~~~Vi~~~~p 331 (437)
.+++||+.-..-+..+...|...++....+.|.|+...|.+.+..|..+. .. .+++..+...|+|+..+.+|+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 38999999999888888888888889999999999999999999998543 22 36677899999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCceEEE
Q 013727 332 TNSKDYIHRVGRTARAGRTGVAIS 355 (437)
Q Consensus 332 ~s~~~~~Q~~GR~~R~g~~g~~i~ 355 (437)
|++..--|.+-|+.|-|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999997654433
No 194
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.05 E-value=6.1e-05 Score=71.81 Aligned_cols=143 Identities=20% Similarity=0.144 Sum_probs=75.7
Q ss_pred EEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc-CCCcEEEEEEcCCChH----H
Q 013727 50 GLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS-GISLRCAVLVGGVDMM----Q 124 (437)
Q Consensus 50 v~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~----~ 124 (437)
..+.||||||++....|++.... .-...|+.|......+.....|..-.. ..-..-....++.... .
T Consensus 2 f~matgsgkt~~ma~lil~~y~k--------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK--------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh--------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 45789999999877777776654 233467777877766665544321100 0000000111111100 0
Q ss_pred HHHHhCCCCcEEEECchHHHHHHhcCCC--C---CCCCccE-EEEccccccccc-------------ccHHHHHHHHHhC
Q 013727 125 QTLALGKRPHIVVATPGRLMDHLTNTKG--F---SLGTLKY-LVLDEADRLLND-------------DFEKSLDEILNVI 185 (437)
Q Consensus 125 ~~~~~~~~~~iiv~Tp~~l~~~l~~~~~--~---~~~~~~~-vViDE~h~~~~~-------------~~~~~~~~i~~~~ 185 (437)
.......+..|+++|.+.|...+.+.+. + ++.+..+ .+-||+||+... .|...+...++.-
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~n 153 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQN 153 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcC
Confidence 0011234577999999999776654332 1 2344443 566999987552 1222222222222
Q ss_pred CccceEEEEeecCchH
Q 013727 186 PRMRQTYLFSATMTKK 201 (437)
Q Consensus 186 ~~~~~~i~~SAT~~~~ 201 (437)
+..-++.+|||.+.+
T Consensus 154 -kd~~~lef~at~~k~ 168 (812)
T COG3421 154 -KDNLLLEFSATIPKE 168 (812)
T ss_pred -CCceeehhhhcCCcc
Confidence 233477889999844
No 195
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.90 E-value=0.00029 Score=72.46 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=46.2
Q ss_pred CCCCCChHHHHHHHHhhhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 26 VGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
.++ .+++-|.+++..+..+ +-+++.|++|+|||.+. -.+...+.. .+..+++++||---+..+.
T Consensus 349 ~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 349 QHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--------AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred ccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--------CCCeEEEEeCcHHHHHHHH
Confidence 344 5899999999999874 66799999999999752 223333322 4667999999976555443
No 196
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.88 E-value=0.00028 Score=73.73 Aligned_cols=64 Identities=19% Similarity=0.137 Sum_probs=47.1
Q ss_pred hCCCCCChHHHHHHHHhhhcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 98 (437)
..|+ .+++-|.+++..++.++ -+++.|+.|+|||++ +-.+...+.. .+..++.++||---+..+
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEecCcHHHHHHH
Confidence 3566 69999999999999865 578999999999975 3333333332 467799999997655443
No 197
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.87 E-value=0.00016 Score=57.89 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCC------ceEeccCCCCHHHHHHHHHHhhCCC-ceEEEEcCCCCCCCCCCC--CCEEEEecCCCC-h-
Q 013727 266 TRLLALMLRNLGQ------RAIPISGHMSQSKRLGALNKFKAGE-CNILICTDVASRGLDIPS--VDMVINYDIPTN-S- 334 (437)
Q Consensus 266 ~~~l~~~l~~~~~------~~~~~~~~~~~~~r~~~~~~f~~g~-~~ilv~T~~~~~Gid~~~--~~~Vi~~~~p~s-~- 334 (437)
.+.+...+...+. ...++..+.+..+...+++.|++.. ..||++|.-+++|+|+|+ ++.||....|.. +
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 3455555555433 2233444455556788999998754 379999988999999998 578888887742 1
Q ss_pred -----------------------------hhHHHHhhhcccCCCCceEEEEEc
Q 013727 335 -----------------------------KDYIHRVGRTARAGRTGVAISLVN 358 (437)
Q Consensus 335 -----------------------------~~~~Q~~GR~~R~g~~g~~i~~~~ 358 (437)
..+.|.+||+-|...+--++.+++
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 123688999999876533444443
No 198
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.80 E-value=5.4e-05 Score=70.21 Aligned_cols=124 Identities=23% Similarity=0.191 Sum_probs=73.4
Q ss_pred ChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 013727 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS 110 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 110 (437)
+++-|.+++.. ...+++|.|.+|||||.+.+.-++..+.... ....++|++++|+..+..+..++........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 57889999998 6678999999999999986665555444321 2456699999999999999998887543211
Q ss_pred cEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCC-CCccEEEEcccc
Q 013727 111 LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSL-GTLKYLVLDEAD 167 (437)
Q Consensus 111 ~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~-~~~~~vViDE~h 167 (437)
.. ................+.|+|.+.+...+.+...... -.-.+-++|+..
T Consensus 74 ~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 QE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 0000011111112356889998877554422111111 112345667666
No 199
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.79 E-value=0.00016 Score=57.89 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCC---ceEeccCCCCHHHHHHHHHHhhCCCc---eEEEEcCC--CCCCCCCCC--CCEEEEecCCCC-
Q 013727 265 ATRLLALMLRNLGQ---RAIPISGHMSQSKRLGALNKFKAGEC---NILICTDV--ASRGLDIPS--VDMVINYDIPTN- 333 (437)
Q Consensus 265 ~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~---~ilv~T~~--~~~Gid~~~--~~~Vi~~~~p~s- 333 (437)
..+.+++.++..+. ...++..+....+...+++.|++... .||+++.- +++|+|+|+ ++.||..+.|..
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 34556666665543 12222222333345688888987543 68888876 999999998 678998888742
Q ss_pred ---h---------------------------hhHHHHhhhcccCCCCceEEEEEc
Q 013727 334 ---S---------------------------KDYIHRVGRTARAGRTGVAISLVN 358 (437)
Q Consensus 334 ---~---------------------------~~~~Q~~GR~~R~g~~g~~i~~~~ 358 (437)
+ ....|.+||+-|...+--++++++
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 122688999999876644455543
No 200
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00044 Score=65.02 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=65.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEE-EEcCc-HHHHHHHHHHHHHhhcCCCcEEEEEEcCCChH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC-VLSPT-RELAIQISEQFEALGSGISLRCAVLVGGVDMM 123 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~l-vl~P~-~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 123 (437)
+.+++.||||+|||.+..-.+......... .+..+. +-+.+ |.-+. .+++.++...++++..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~-----~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~-------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDD-----KSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKA-------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc-----CCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEe--------
Confidence 468899999999998754333222221100 223343 33443 22222 2255555444554321
Q ss_pred HHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccc-cHHHHHHHHHhCC-ccceEEEEeecCch
Q 013727 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNVIP-RMRQTYLFSATMTK 200 (437)
Q Consensus 124 ~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~ 200 (437)
+-++..+...+.. +.++++|++|++.+..... ....+..++.... +...++.+|||...
T Consensus 239 -------------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~ 299 (388)
T PRK12723 239 -------------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT 299 (388)
T ss_pred -------------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH
Confidence 1233444443332 3568999999999775321 2344555666544 32457888999864
No 201
>PRK04296 thymidine kinase; Provisional
Probab=97.78 E-value=0.00011 Score=62.43 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=23.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P 90 (437)
.-.++.||+|+|||...+-. +..+.. .+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~-~~~~~~--------~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQR-AYNYEE--------RGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHH-HHHHHH--------cCCeEEEEec
Confidence 44688999999999764433 333322 4566777766
No 202
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.76 E-value=0.00072 Score=71.29 Aligned_cols=75 Identities=19% Similarity=0.120 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHhCCCCCChHHHHHHHHhhhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 013727 14 GLRDELVEACENVGWKTPSKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (437)
Q Consensus 14 ~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~ 92 (437)
+.++.........++ .+++-|.+++..+.. ++-.++.|+.|+|||++ +-.+...+.. .+.+++.++||-
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~--------~G~~V~g~ApTg 435 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA--------AGYRVVGGALAG 435 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEEcCcH
Confidence 344555544444455 699999999998865 46689999999999975 3333333332 567899999986
Q ss_pred HHHHHH
Q 013727 93 ELAIQI 98 (437)
Q Consensus 93 ~L~~q~ 98 (437)
--+..+
T Consensus 436 kAA~~L 441 (1102)
T PRK13826 436 KAAEGL 441 (1102)
T ss_pred HHHHHH
Confidence 655444
No 203
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.73 E-value=0.00017 Score=57.20 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=23.3
Q ss_pred cEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecC
Q 013727 159 KYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 159 ~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
.+||+||+|++.. ...+..+........-.+++++|+
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEECh
Confidence 6899999998642 444555545444444456666664
No 204
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.71 E-value=0.00024 Score=71.56 Aligned_cols=140 Identities=21% Similarity=0.183 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCc-EEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 013727 14 GLRDELVEACENVGWKTPSKIQAEAIPHALEGKD-LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (437)
Q Consensus 14 ~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~-~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~ 92 (437)
.+.|.+... -+..++.-|++|+..++..++ .+|.|=+|+|||.+....+ ..+.. .+.++|+.+=|-
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~--------~gkkVLLtsyTh 723 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA--------LGKKVLLTSYTH 723 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH--------cCCeEEEEehhh
Confidence 344554443 334688899999999887754 6889999999998755433 33322 677788888887
Q ss_pred HHHHHHHHHHHHhhcCC---C--------cEEEEEEcCC--ChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCcc
Q 013727 93 ELAIQISEQFEALGSGI---S--------LRCAVLVGGV--DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLK 159 (437)
Q Consensus 93 ~L~~q~~~~~~~~~~~~---~--------~~~~~~~g~~--~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~ 159 (437)
.-+..+.-.++.+.... | +.-.+...+. ............+.||.||---+ .++.|..+.++
T Consensus 724 sAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi-----~~plf~~R~FD 798 (1100)
T KOG1805|consen 724 SAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI-----NHPLFVNRQFD 798 (1100)
T ss_pred HHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC-----CchhhhccccC
Confidence 77777777776653221 0 0000001111 11222233345678888884222 23445667799
Q ss_pred EEEEcccccccc
Q 013727 160 YLVLDEADRLLN 171 (437)
Q Consensus 160 ~vViDE~h~~~~ 171 (437)
+.|+|||-.+..
T Consensus 799 ~cIiDEASQI~l 810 (1100)
T KOG1805|consen 799 YCIIDEASQILL 810 (1100)
T ss_pred EEEEcccccccc
Confidence 999999997654
No 205
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.71 E-value=0.00047 Score=64.86 Aligned_cols=74 Identities=15% Similarity=0.003 Sum_probs=50.0
Q ss_pred CCCCCChHHHHHHHHhhhc----CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 013727 26 VGWKTPSKIQAEAIPHALE----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 101 (437)
+.|...+|-|.+=...+.. +-+.++.+|+|+|||.+.+-.++.+....+. ...+.++..-|..=++....+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~-----~~~KliYCSRTvpEieK~l~E 86 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD-----EHRKLIYCSRTVPEIEKALEE 86 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc-----ccceEEEecCcchHHHHHHHH
Confidence 5777788888776665543 4689999999999999877777777665442 334556665555444444444
Q ss_pred HHH
Q 013727 102 FEA 104 (437)
Q Consensus 102 ~~~ 104 (437)
++.
T Consensus 87 l~~ 89 (755)
T KOG1131|consen 87 LKR 89 (755)
T ss_pred HHH
Confidence 443
No 206
>PRK06526 transposase; Provisional
Probab=97.71 E-value=0.00023 Score=63.18 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=18.8
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHH
Q 013727 42 ALEGKDLIGLAQTGSGKTGAFALP 65 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~~~~~ 65 (437)
+..+.++++.||+|+|||..+...
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHH
Confidence 335679999999999999865443
No 207
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.70 E-value=0.00027 Score=63.79 Aligned_cols=66 Identities=23% Similarity=0.105 Sum_probs=51.4
Q ss_pred HhCCCCCChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 013727 24 ENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELA 95 (437)
Q Consensus 24 ~~~g~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 95 (437)
+.+|+......|.-|++.++.. .-+.+.|+.|||||+.++.+.++.....+ .-.+++|.=|+..+-
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~------~y~KiiVtRp~vpvG 289 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK------RYRKIIVTRPTVPVG 289 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh------hhceEEEecCCcCcc
Confidence 3579988889999999999876 45788999999999998888888877654 445567766765543
No 208
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.0004 Score=64.69 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=62.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (437)
+..+++.||||+|||++....+....... ...++.++. +...-.--.+.++.|+...++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~-------G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~---------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF-------GASKVALLT-TDSYRIGGHEQLRIFGKILGVPVH---------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEe-cccccccHHHHHHHHHHHcCCceE----------
Confidence 46789999999999987554333333221 112344433 222211122344444433344332
Q ss_pred HHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccc-ccHHHHHHHHHhCCccceEEEEeecCchHH
Q 013727 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIPRMRQTYLFSATMTKKV 202 (437)
Q Consensus 125 ~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 202 (437)
.+.+++.+...+.. +.+.++|+||.+-+.... .....+..+.........++.+|||.....
T Consensus 199 -----------~~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 199 -----------AVKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred -----------ecCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 23344444333332 345688999999754322 223333333232233345788899986543
No 209
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.0011 Score=61.69 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=68.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEE-cCc-H-HHHHHHHHHHHHhhcCCCcEEEEEEcCCCh
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL-SPT-R-ELAIQISEQFEALGSGISLRCAVLVGGVDM 122 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl-~P~-~-~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 122 (437)
+.+++.||||+|||.+....+. .+.. .+.++.++ +.+ | ..++|+.. ++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~--------~GkkVglI~aDt~RiaAvEQLk~----yae~lgipv--------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHG--------KKKTVGFITTDHSRIGTVQQLQD----YVKTIGFEV--------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHH--------cCCcEEEEecCCcchHHHHHHHH----HhhhcCCcE---------
Confidence 4678999999999987554333 2221 34344444 422 2 23444443 332223322
Q ss_pred HHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc-cccHHHHHHHHHhCCccceEEEEeecCch-
Q 013727 123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTK- 200 (437)
Q Consensus 123 ~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~- 200 (437)
+++.+|..+.+.+.... .-.++++|++|-+-+... ......+..++....+..-++.+|||...
T Consensus 300 ------------~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 300 ------------IAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred ------------EecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 22345666655554321 122588999998876543 22344455555544444446678887654
Q ss_pred HHHHHHHHh
Q 013727 201 KVKKLQRAC 209 (437)
Q Consensus 201 ~~~~~~~~~ 209 (437)
+.......+
T Consensus 366 d~~~i~~~F 374 (436)
T PRK11889 366 DMIEIITNF 374 (436)
T ss_pred HHHHHHHHh
Confidence 445555444
No 210
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.62 E-value=0.00017 Score=63.86 Aligned_cols=57 Identities=25% Similarity=0.467 Sum_probs=50.1
Q ss_pred HHHHHhhCCCceEEEEcCCCCCCCCCCC--------CCEEEEecCCCChhhHHHHhhhcccCCCC
Q 013727 294 GALNKFKAGECNILICTDVASRGLDIPS--------VDMVINYDIPTNSKDYIHRVGRTARAGRT 350 (437)
Q Consensus 294 ~~~~~f~~g~~~ilv~T~~~~~Gid~~~--------~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~ 350 (437)
...+.|.+|+..|+|.+++.+.|+.++. -++-|.+.+|||.+..+|..||++|.++.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 4567999999999999999999999873 23557899999999999999999999974
No 211
>PRK08181 transposase; Validated
Probab=97.59 E-value=0.001 Score=59.40 Aligned_cols=59 Identities=29% Similarity=0.329 Sum_probs=34.8
Q ss_pred ChHHHHHHHH----hhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 31 PSKIQAEAIP----HALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 31 ~~~~Q~~~~~----~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
+...|..++. .+-.++++++.||+|+|||..+.. +...+.. .+..+++ ++..+|..++.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~--------~g~~v~f-~~~~~L~~~l~ 150 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIE--------NGWRVLF-TRTTDLVQKLQ 150 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHH--------cCCceee-eeHHHHHHHHH
Confidence 3456666653 334668899999999999975433 2223322 3444444 45556655553
No 212
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.59 E-value=0.00078 Score=62.40 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (437)
++.+.+.||||.|||++..=.+..+..... .....+|-+.|-- .--.++++.|+.-+++++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~------~~kVaiITtDtYR--IGA~EQLk~Ya~im~vp~----------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK------KKKVAIITTDTYR--IGAVEQLKTYADIMGVPL----------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc------CcceEEEEeccch--hhHHHHHHHHHHHhCCce-----------
Confidence 677899999999999985543333331211 2333455555421 122345555554445544
Q ss_pred HHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccc-cccccHHHHHHHHHhCCccceEEEEeecCchH
Q 013727 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL-LNDDFEKSLDEILNVIPRMRQTYLFSATMTKK 201 (437)
Q Consensus 125 ~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~-~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 201 (437)
.++-+|.-|...+. .+.++++|.+|=+-+- .+......+..++....+..-.+.+|||....
T Consensus 264 ----------~vv~~~~el~~ai~-----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~ 326 (407)
T COG1419 264 ----------EVVYSPKELAEAIE-----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYE 326 (407)
T ss_pred ----------EEecCHHHHHHHHH-----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchH
Confidence 34455655655443 3556788999977643 23344556666666665555678889997643
No 213
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.56 E-value=0.00026 Score=62.30 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=37.8
Q ss_pred cccccCccccCCCHHHHHHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHH
Q 013727 4 EKEVKTFKELGLRDELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEI 73 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~ 73 (437)
+.++.+|++|++|+-+.+.+.. .|. +||.||||||||.+ +..++.++.++
T Consensus 102 p~~i~~~e~LglP~i~~~~~~~~~GL-------------------ILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAESPRGL-------------------ILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHhCCCce-------------------EEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 4567788888888887775543 343 89999999999986 56677777654
No 214
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.55 E-value=0.0012 Score=56.30 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=34.0
Q ss_pred CCccEEEEcccccccc-cccHHHHHHHHHhCCccceEEEEeecCchHHH
Q 013727 156 GTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVK 203 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 203 (437)
+++++|++|-+-+... ......+..++....+..-.+.+|||.....-
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 3478999999876543 34556777777777666678899999876543
No 215
>PRK14974 cell division protein FtsY; Provisional
Probab=97.51 E-value=0.0042 Score=57.31 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=72.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc---HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCh
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT---RELAIQISEQFEALGSGISLRCAVLVGGVDM 122 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~---~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 122 (437)
.-+++.|++|+|||.+..-.+ ..+.. .+.+++++... ..-.+|+......+ ++.+.....+..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~--------~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~d- 206 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK--------NGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGAD- 206 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH--------cCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCCC-
Confidence 357889999999998643322 33332 34456555433 34445655444443 343322111111
Q ss_pred HHHHHHhCCCCcEEEECchH-HHHHHhcCCCCCCCCccEEEEcccccccc-cccHHHHHHHHHhCCccceEEEEeecCch
Q 013727 123 MQQTLALGKRPHIVVATPGR-LMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (437)
Q Consensus 123 ~~~~~~~~~~~~iiv~Tp~~-l~~~l~~~~~~~~~~~~~vViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 200 (437)
|.. +.+.+... ....+++|++|.+.++.. ......+..+.....+...++.++||...
T Consensus 207 -----------------p~~v~~~ai~~~---~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 207 -----------------PAAVAYDAIEHA---KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred -----------------HHHHHHHHHHHH---HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 111 11222110 123467999999998753 45566777777777777778888998776
Q ss_pred HHHHHHHHh
Q 013727 201 KVKKLQRAC 209 (437)
Q Consensus 201 ~~~~~~~~~ 209 (437)
+....+..+
T Consensus 267 d~~~~a~~f 275 (336)
T PRK14974 267 DAVEQAREF 275 (336)
T ss_pred hHHHHHHHH
Confidence 554444444
No 216
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.43 E-value=0.00042 Score=61.15 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=29.1
Q ss_pred CCCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecC
Q 013727 154 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 154 ~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
..+.+..||+||||.|....+. .+.+.++..+....+++.+.-+
T Consensus 126 ~~~~fKiiIlDEcdsmtsdaq~-aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDAQA-ALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHHHHH-HHHHHHhccccceEEEEEcCCh
Confidence 5667899999999987664443 3555566655555566655443
No 217
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.43 E-value=0.0027 Score=51.13 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 57899999999999964
No 218
>PHA02533 17 large terminase protein; Provisional
Probab=97.42 E-value=0.0016 Score=64.16 Aligned_cols=147 Identities=12% Similarity=0.051 Sum_probs=87.2
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 109 (437)
.|.|+|...+..+..++-.++..+-..|||.+....++..+... ++..+++++|+..-+..+.+.++.+....
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-------KDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-------CCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 48999999999887677778899999999998765555444422 45589999999999988888887654432
Q ss_pred Cc--EEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCc
Q 013727 110 SL--RCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187 (437)
Q Consensus 110 ~~--~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~ 187 (437)
+. ........ .....+.++..|.+.|.+. ....=.+.+++|+||+|.+-+ +...+..+...+..
T Consensus 132 P~l~~~~i~~~~----~~~I~l~NGS~I~~lss~~--------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~las 197 (534)
T PHA02533 132 PDFLQPGIVEWN----KGSIELENGSKIGAYASSP--------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISS 197 (534)
T ss_pred HHHhhcceeecC----ccEEEeCCCCEEEEEeCCC--------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHc
Confidence 21 10000000 0112223455565544221 111233467899999996543 33444444444433
Q ss_pred c--ceEEEEeec
Q 013727 188 M--RQTYLFSAT 197 (437)
Q Consensus 188 ~--~~~i~~SAT 197 (437)
. .+++.+|.+
T Consensus 198 g~~~r~iiiSTp 209 (534)
T PHA02533 198 GRSSKIIITSTP 209 (534)
T ss_pred CCCceEEEEECC
Confidence 2 345454544
No 219
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.0032 Score=60.38 Aligned_cols=129 Identities=21% Similarity=0.205 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEE-cCc-HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCh
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL-SPT-RELAIQISEQFEALGSGISLRCAVLVGGVDM 122 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl-~P~-~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 122 (437)
++.+++.||||+|||.+....+....... .+.++.++ +.+ +.-+ .+.+..++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~--------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYRIGA---VEQLKTYAKIMGIPV--------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccHHHH---HHHHHHHHHHhCCce---------
Confidence 45688999999999987554333322111 33344444 332 2211 233444433233322
Q ss_pred HHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc-cccHHHHHHHHHh-CCccceEEEEeecCch
Q 013727 123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNV-IPRMRQTYLFSATMTK 200 (437)
Q Consensus 123 ~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~-~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~ 200 (437)
.++.++..+...+.. +.++++|+||.+-+... ......+..++.. ..+....+++|||...
T Consensus 282 ------------~~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 282 ------------EVVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred ------------EccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 122344444444433 33579999999875332 2233445555552 2233457788998764
Q ss_pred -HHHHHHHHh
Q 013727 201 -KVKKLQRAC 209 (437)
Q Consensus 201 -~~~~~~~~~ 209 (437)
.+......+
T Consensus 345 ~~l~~~~~~f 354 (424)
T PRK05703 345 EDLKDIYKHF 354 (424)
T ss_pred HHHHHHHHHh
Confidence 444444433
No 220
>PRK06921 hypothetical protein; Provisional
Probab=97.33 E-value=0.0056 Score=54.89 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 98 (437)
+..+++.|++|+|||... ..+...+... .+..++++. ..++..++
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~~-------~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMRK-------KGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhhh-------cCceEEEEE-HHHHHHHH
Confidence 567999999999999753 3344444431 144455544 44554443
No 221
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.28 E-value=0.00076 Score=54.00 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.||+|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 46789999999999985
No 222
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.20 E-value=0.0057 Score=51.83 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=33.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 48 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 48 ~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
+++.||+|+|||...+-.+...+. .+..++|+.. .+-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---------~g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---------RGEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---------CCCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 689999999999864433333332 4556777754 455777777777764
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.17 E-value=0.0082 Score=52.86 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=26.4
Q ss_pred CCccEEEEcccccccccccHH-HHHHHHHhC-CccceEEEEeecCch
Q 013727 156 GTLKYLVLDEADRLLNDDFEK-SLDEILNVI-PRMRQTYLFSATMTK 200 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~-~~~~i~~~~-~~~~~~i~~SAT~~~ 200 (437)
..+++|||||++......+.. .+..|++.. .....+++.|--.+.
T Consensus 161 ~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~ 207 (244)
T PRK07952 161 SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNME 207 (244)
T ss_pred ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence 358899999999765555543 344555542 224455555544333
No 224
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.16 E-value=0.0017 Score=61.24 Aligned_cols=60 Identities=22% Similarity=0.194 Sum_probs=42.5
Q ss_pred CChHHHHHHHHhh------hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 013727 30 TPSKIQAEAIPHA------LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (437)
Q Consensus 30 ~~~~~Q~~~~~~~------~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 98 (437)
+|++-|+.++..+ ..+..+++.|+.|+|||..+ -.+...+.. .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~--------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS--------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc--------ccceEEEecchHHHHHhc
Confidence 3678899998888 56788999999999999742 112222221 456789999987655544
No 225
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.14 E-value=0.0097 Score=48.96 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=25.6
Q ss_pred CCCccEEEEcccccccccc----------cHHHHHHHHHhCCccceEEEEeecC
Q 013727 155 LGTLKYLVLDEADRLLNDD----------FEKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~----------~~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
....+++|+||.+.+.... ....+..+..........++++...
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~ 136 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQV 136 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEec
Confidence 3457899999999765432 2345555555554433344444443
No 226
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.12 E-value=0.0021 Score=65.39 Aligned_cols=80 Identities=20% Similarity=0.129 Sum_probs=55.9
Q ss_pred CCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcC
Q 013727 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (437)
Q Consensus 29 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 108 (437)
..+++-|++++..- ..+++|.|..|||||.+...-+...+.... ..+.++|+++.|+..|..+.+++......
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-----~~~~~IL~ltft~~AA~em~eRL~~~lg~ 267 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQ-----AQPEQILLLAFGRQAAEEMDERIRERLGT 267 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-----CCHHHeEEEeccHHHHHHHHHHHHHhcCC
Confidence 46999999999743 356899999999999885544433332211 14557999999999999999888765432
Q ss_pred CCcEEEE
Q 013727 109 ISLRCAV 115 (437)
Q Consensus 109 ~~~~~~~ 115 (437)
.++.+.+
T Consensus 268 ~~v~v~T 274 (684)
T PRK11054 268 EDITART 274 (684)
T ss_pred CCcEEEe
Confidence 2333333
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.08 E-value=0.0089 Score=55.19 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=35.1
Q ss_pred ChHHHHHHHHhhh--------cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 31 PSKIQAEAIPHAL--------EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 31 ~~~~Q~~~~~~~~--------~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
|+..+..++..+. .+.++++.||||+|||..+. .+...+.. .+..|++ .+...|..++.
T Consensus 161 ~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~-aIa~~l~~--------~g~~V~y-~t~~~l~~~l~ 227 (329)
T PRK06835 161 PRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSN-CIAKELLD--------RGKSVIY-RTADELIEILR 227 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHH-HHHHHHHH--------CCCeEEE-EEHHHHHHHHH
Confidence 4555555555333 34789999999999997533 34444443 4444554 45455655443
No 228
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.07 E-value=0.0023 Score=66.23 Aligned_cols=72 Identities=24% Similarity=0.192 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 29 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
..|++-|++++.. ...+++|.|.+|||||.+...-+...+... ..+..++|+++-|+..|..+.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-----~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-----NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-----CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4689999999975 346899999999999998555444433221 12455799999999999999999988754
No 229
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.06 E-value=0.0013 Score=67.19 Aligned_cols=70 Identities=20% Similarity=0.132 Sum_probs=53.4
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
.+++-|.+++... ..+++|.|.+|||||.+...-+...+.... .+..++|+++.|+..|..+.+++....
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4789999998753 467899999999999986555544443211 145579999999999999999988764
No 230
>PRK12377 putative replication protein; Provisional
Probab=97.05 E-value=0.007 Score=53.43 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=28.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 101 (437)
.++++.||+|+|||..+ .++...+.. .+..+ +.++..+|..++...
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~--------~g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLA--------KGRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH--------cCCCe-EEEEHHHHHHHHHHH
Confidence 57899999999999753 334444442 33334 444555666655443
No 231
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.05 E-value=0.0025 Score=65.89 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 29 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
..|++-|.+++... ..+++|.|.+|||||.+...-+...+... ..+..++|+++-|+..|..+.+++.++..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-----~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVE-----NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcC-----CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35899999999753 46899999999999998655444333221 12456799999999999999999988754
No 232
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.023 Score=55.26 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~ 64 (437)
.++.+.+.||||+|||.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 356788999999999987543
No 233
>PRK08116 hypothetical protein; Validated
Probab=97.01 E-value=0.01 Score=53.28 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=26.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 101 (437)
.+++.|++|+|||..+. .+...+.. .+..+++ .+..++...+...
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~--------~~~~v~~-~~~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIE--------KGVPVIF-VNFPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH--------cCCeEEE-EEHHHHHHHHHHH
Confidence 49999999999997533 34555543 2333444 4445555544433
No 234
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.99 E-value=0.05 Score=62.17 Aligned_cols=135 Identities=17% Similarity=0.192 Sum_probs=77.7
Q ss_pred CChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 30 TPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
.+++-|.+++..++.. +-.++.|+.|+|||.+ +-.++..+.. .+.++++++||-.-+..+.+.....+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~--------~G~~V~~lAPTgrAA~~L~e~~g~~A- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE--------QGYEIQIITAGSLSAQELRQKIPRLA- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHhcchh-
Confidence 5899999999999875 5689999999999975 2233333322 56789999999876666555432110
Q ss_pred CCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhC-C
Q 013727 108 GISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI-P 186 (437)
Q Consensus 108 ~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~-~ 186 (437)
.+ .......+.. ..-..|...|+ . +...+..-++|||||+-++... .+..++... +
T Consensus 499 ------~T------i~~~l~~l~~--~~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl~~~----~~~~Ll~~a~~ 555 (1960)
T TIGR02760 499 ------ST------FITWVKNLFN--DDQDHTVQGLL---D--KSSPFSNKDIFVVDEANKLSNN----ELLKLIDKAEQ 555 (1960)
T ss_pred ------hh------HHHHHHhhcc--cccchhHHHhh---c--ccCCCCCCCEEEEECCCCCCHH----HHHHHHHHHhh
Confidence 00 0000001111 01122222232 1 1123556789999999965333 345555443 3
Q ss_pred ccceEEEEeec
Q 013727 187 RMRQTYLFSAT 197 (437)
Q Consensus 187 ~~~~~i~~SAT 197 (437)
...++|++.=+
T Consensus 556 ~garvVlvGD~ 566 (1960)
T TIGR02760 556 HNSKLILLNDS 566 (1960)
T ss_pred cCCEEEEEcCh
Confidence 55677776544
No 235
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.98 E-value=0.006 Score=53.05 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=59.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (437)
..+++.||+|+|||-. +..+...+.+.. ++.+++|+.. .+........+..
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~------~~~~v~y~~~-~~f~~~~~~~~~~--------------------- 85 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQH------PGKRVVYLSA-EEFIREFADALRD--------------------- 85 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHC------TTS-EEEEEH-HHHHHHHHHHHHT---------------------
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhcc------ccccceeecH-HHHHHHHHHHHHc---------------------
Confidence 3589999999999973 344444444332 4556666544 3444433333322
Q ss_pred HHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccc-ccHHHHHHHHHhCC-ccceEEEEeecCchHH
Q 013727 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIP-RMRQTYLFSATMTKKV 202 (437)
Q Consensus 126 ~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~-~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 202 (437)
.....+.+. +...+++++|..|.+... .+...+..+++.+. ...++|+.|...|..+
T Consensus 86 ------------~~~~~~~~~--------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 ------------GEIEEFKDR--------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ------------TSHHHHHHH--------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ------------ccchhhhhh--------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 011222222 334789999999987663 24455555555543 3456666665665543
No 236
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.94 E-value=0.026 Score=50.48 Aligned_cols=128 Identities=15% Similarity=0.183 Sum_probs=68.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEE-cCcH--HHHHHHHHHHHHhhcCCCcEEEEEEcCCCh
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL-SPTR--ELAIQISEQFEALGSGISLRCAVLVGGVDM 122 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl-~P~~--~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 122 (437)
..+++.|++|+|||..+...+.. +.. .+..+.++ +.+. ..+.|+....... ++.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~-l~~--------~~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~~~~-------- 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQ-FHG--------KKKTVGFITTDHSRIGTVQQLQDYVKTI----GFEVI-------- 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH-HHH--------cCCeEEEEecCCCCHHHHHHHHHHhhhc----CceEE--------
Confidence 57899999999999865543322 221 22334333 3222 4555555443332 23221
Q ss_pred HHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc-cccHHHHHHHHHhCCccceEEEEeecCch-
Q 013727 123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTK- 200 (437)
Q Consensus 123 ~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~- 200 (437)
...++..+.+.+.... ....+++|++|-+=+... ......+..++....+..-++.+|||...
T Consensus 135 -------------~~~~~~~l~~~l~~l~--~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 135 -------------AVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred -------------ecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 1124444444433211 123588999999876532 33344455566555554456778998654
Q ss_pred HHHHHHHHh
Q 013727 201 KVKKLQRAC 209 (437)
Q Consensus 201 ~~~~~~~~~ 209 (437)
+.....+.+
T Consensus 200 d~~~~~~~f 208 (270)
T PRK06731 200 DMIEIITNF 208 (270)
T ss_pred HHHHHHHHh
Confidence 555555544
No 237
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.94 E-value=0.0034 Score=65.44 Aligned_cols=157 Identities=20% Similarity=0.194 Sum_probs=91.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHH---------hhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEE
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEI---------AENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAV 115 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~---------~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~ 115 (437)
|+++++.-..|.|||..-+...+...-.. .........+-+|||||. ++.-||..++....... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 46788889999999987655544432110 001112234568999996 66789999998887653 56655
Q ss_pred EEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCC-------------C----CCC--ccEEEEcccccccccccHH
Q 013727 116 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF-------------S----LGT--LKYLVLDEADRLLNDDFEK 176 (437)
Q Consensus 116 ~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~-------------~----~~~--~~~vViDE~h~~~~~~~~~ 176 (437)
..|=....-.....--.+|||++|++.|..-+...... . +-. +=-|++|||++ +.. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQM-ves-ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQM-VES-SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHh-hcc-hHH
Confidence 55532211111112235899999999986655322100 0 000 11389999994 443 333
Q ss_pred HHHHHHHhCCccceEEEEeecCchHHHHHH
Q 013727 177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQ 206 (437)
Q Consensus 177 ~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 206 (437)
...+++..++... .-.+|+|+-..+..+-
T Consensus 530 ~~a~M~~rL~~in-~W~VTGTPiq~Iddl~ 558 (1394)
T KOG0298|consen 530 AAAEMVRRLHAIN-RWCVTGTPIQKIDDLF 558 (1394)
T ss_pred HHHHHHHHhhhhc-eeeecCCchhhhhhhH
Confidence 4455555554332 5688999876655543
No 238
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.90 E-value=0.0053 Score=63.23 Aligned_cols=70 Identities=21% Similarity=0.117 Sum_probs=52.7
Q ss_pred ChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
+++-|.+++.. ...+++|.|.+|||||.+.+.-+...+.... ....++++++.|+..+.++.+++.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-----~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-----YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78899999875 3468999999999999886555544443211 1345689999999999999999887643
No 239
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.0045 Score=51.30 Aligned_cols=106 Identities=14% Similarity=0.181 Sum_probs=60.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (437)
++-.++.||+.||||...+-.+-.+.. .+.++++..|...- ++ +...+.-.-|.+
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~---------~g~~v~vfkp~iD~---------R~----~~~~V~Sr~G~~--- 58 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE---------AGMKVLVFKPAIDT---------RY----GVGKVSSRIGLS--- 58 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH---------cCCeEEEEeccccc---------cc----ccceeeeccCCc---
Confidence 344689999999999863332222222 67778998884321 11 111111111111
Q ss_pred HHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhC
Q 013727 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185 (437)
Q Consensus 125 ~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~ 185 (437)
..-++|-.+..+.+.+.... ....++.|.+|||+ +++...-..+..+.+.+
T Consensus 59 -------~~A~~i~~~~~i~~~i~~~~--~~~~~~~v~IDEaQ-F~~~~~v~~l~~lad~l 109 (201)
T COG1435 59 -------SEAVVIPSDTDIFDEIAALH--EKPPVDCVLIDEAQ-FFDEELVYVLNELADRL 109 (201)
T ss_pred -------ccceecCChHHHHHHHHhcc--cCCCcCEEEEehhH-hCCHHHHHHHHHHHhhc
Confidence 13366666777777776533 12227899999999 66655556666666543
No 240
>PRK08727 hypothetical protein; Validated
Probab=96.86 E-value=0.0094 Score=52.47 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
..+++.||+|+|||...
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999743
No 241
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.84 E-value=0.0049 Score=59.52 Aligned_cols=92 Identities=27% Similarity=0.204 Sum_probs=59.3
Q ss_pred CCCHHHH-HHHHhCCCCCChH----HHHHHHHhhh--cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEE
Q 013727 14 GLRDELV-EACENVGWKTPSK----IQAEAIPHAL--EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (437)
Q Consensus 14 ~l~~~~~-~~l~~~g~~~~~~----~Q~~~~~~~~--~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~l 86 (437)
+..++++ ..|++.--..++. +|.+-=..+. .++-++|+|..|||||.+++.-+...+....... .+..+|
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l---~~k~vl 264 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL---QAKPVL 264 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc---ccCceE
Confidence 4555554 4666553334432 2333333333 3467899999999999998776555444332211 344499
Q ss_pred EEcCcHHHHHHHHHHHHHhhcC
Q 013727 87 VLSPTRELAIQISEQFEALGSG 108 (437)
Q Consensus 87 vl~P~~~L~~q~~~~~~~~~~~ 108 (437)
|+.|++-+.+-+.+.+-.++..
T Consensus 265 vl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred EEcCcHHHHHHHHHhchhhccC
Confidence 9999999999999999888643
No 242
>PRK05642 DNA replication initiation factor; Validated
Probab=96.84 E-value=0.0085 Score=52.75 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=27.9
Q ss_pred CccEEEEcccccccc-cccHHHHHHHHHhCCccceEEEEeecCch
Q 013727 157 TLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (437)
Q Consensus 157 ~~~~vViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 200 (437)
..+++|+|++|.+.. ..+...+..+++.+......++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 457899999996644 34455567777665443334566666543
No 243
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.81 E-value=0.009 Score=53.15 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=43.6
Q ss_pred HhCCCCCChHHHHHHHHhhh-------cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 013727 24 ENVGWKTPSKIQAEAIPHAL-------EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (437)
Q Consensus 24 ~~~g~~~~~~~Q~~~~~~~~-------~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 96 (437)
..+.|.-....+..++..+. ++.++++.||+|+|||..+.. +...+.. .+.+ ++++++.+|+.
T Consensus 77 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~A-i~~~l~~--------~g~s-v~f~~~~el~~ 146 (254)
T COG1484 77 EEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIA-IGNELLK--------AGIS-VLFITAPDLLS 146 (254)
T ss_pred ccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHH-HHHHHHH--------cCCe-EEEEEHHHHHH
Confidence 33444445555666554443 457999999999999986443 3333332 3444 45567778877
Q ss_pred HHHHHHH
Q 013727 97 QISEQFE 103 (437)
Q Consensus 97 q~~~~~~ 103 (437)
++...+.
T Consensus 147 ~Lk~~~~ 153 (254)
T COG1484 147 KLKAAFD 153 (254)
T ss_pred HHHHHHh
Confidence 7766654
No 244
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.80 E-value=0.0065 Score=54.99 Aligned_cols=79 Identities=20% Similarity=0.127 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 013727 18 ELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 97 (437)
Q Consensus 18 ~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q 97 (437)
++.++|..-|.....+.-.+.+.-+..|..+++.|++|+|||...+-.+...+.. .+..++|+.-- .-..+
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS~E-~~~~~ 73 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTISLE-EPVVR 73 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEEcc-cCHHH
Confidence 4555565334433322223334445567889999999999997544333333321 25567777542 23445
Q ss_pred HHHHHHHh
Q 013727 98 ISEQFEAL 105 (437)
Q Consensus 98 ~~~~~~~~ 105 (437)
+...+...
T Consensus 74 ~~~r~~~~ 81 (271)
T cd01122 74 TARRLLGQ 81 (271)
T ss_pred HHHHHHHH
Confidence 55555433
No 245
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0086 Score=60.88 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=64.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (437)
+-+++.||||+|||++....+....... ...++.++.-...-+ -..+.++.++...++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-------G~kkV~lit~Dt~Ri-gA~eQL~~~a~~~gvpv------------ 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVARE-------GADQLALLTTDSFRI-GALEQLRIYGRILGVPV------------ 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHc-------CCCeEEEecCcccch-HHHHHHHHHHHhCCCCc------------
Confidence 4578999999999987554333322211 122444443321110 01233444443333322
Q ss_pred HHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc-cccHHHHHHHHHhCCccceEEEEeecCchH-HH
Q 013727 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKK-VK 203 (437)
Q Consensus 126 ~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~ 203 (437)
.++.+|..+.+.+.. +.+.++|+||=+-+... ......+..+.....+...++.++||.... +.
T Consensus 246 ---------~~~~~~~~l~~al~~-----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 246 ---------HAVKDAADLRFALAA-----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred ---------cccCCHHHHHHHHHH-----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 123355555555543 33467888887775432 223334444444444555677788886533 33
Q ss_pred HHHHHh
Q 013727 204 KLQRAC 209 (437)
Q Consensus 204 ~~~~~~ 209 (437)
.....|
T Consensus 312 ~i~~~f 317 (767)
T PRK14723 312 EVVHAY 317 (767)
T ss_pred HHHHHH
Confidence 344333
No 246
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.79 E-value=0.018 Score=53.42 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=26.2
Q ss_pred CccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 157 ~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
..++||+||+|.+........+..+++..+...++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467899999998744445556667777766666555433
No 247
>PRK06893 DNA replication initiation factor; Validated
Probab=96.78 E-value=0.0057 Score=53.72 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=28.1
Q ss_pred CCccEEEEcccccccc-cccHHHHHHHHHhCCc-cceEEEEeecCch
Q 013727 156 GTLKYLVLDEADRLLN-DDFEKSLDEILNVIPR-MRQTYLFSATMTK 200 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~-~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~ 200 (437)
.+.+++++||+|.+.. ..+...+..+++.... ..+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 3467899999997753 3344455555554433 3456677777644
No 248
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.76 E-value=0.0083 Score=52.89 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=24.2
Q ss_pred ccEEEEcccccccc-cccHHHHHHHHHhCCc-cceEEEEeecCc
Q 013727 158 LKYLVLDEADRLLN-DDFEKSLDEILNVIPR-MRQTYLFSATMT 199 (437)
Q Consensus 158 ~~~vViDE~h~~~~-~~~~~~~~~i~~~~~~-~~~~i~~SAT~~ 199 (437)
+++|++||+|.+.. ..+...+..+++.+.. ....+++|++.+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~ 141 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRP 141 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Confidence 46899999997754 3445555555554432 222345555544
No 249
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.76 E-value=0.011 Score=59.78 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=25.7
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
..++++||||+|+|....+.. +.++++.-+.+. .+++++|-+
T Consensus 118 gr~KVIIIDEah~LT~~A~NA-LLKtLEEPP~~v-~FILaTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNA-MLKTLEEPPPHV-KFILATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHHHH-HHHHHHhcCCCe-EEEEEECCh
Confidence 457899999999876654444 344555554444 344455533
No 250
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.76 E-value=0.012 Score=51.52 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~ 62 (437)
.+..+++.||+|+|||..+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3468999999999999753
No 251
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.75 E-value=0.013 Score=64.29 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=45.0
Q ss_pred CChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 30 TPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
.+++.|++++..++.. +-+++.|..|+|||.+.- .++..+..... ..+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~e----~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFR-AVMSAVNMLPE----SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHH-HHHHHHHHHhh----ccCceEEEEechHHHHHHHH
Confidence 6899999999999865 678999999999998632 22222221110 04567888999876665543
No 252
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.75 E-value=0.0089 Score=58.73 Aligned_cols=71 Identities=15% Similarity=0.074 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhc-----C----CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 013727 33 KIQAEAIPHALE-----G----KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (437)
Q Consensus 33 ~~Q~~~~~~~~~-----~----~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 103 (437)
|||.-++..+.. + +.+++..|-|-|||......++..+.-.+ ..+..++++++++.-|..+.+.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-----~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG-----EPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC-----ccCceEEEEeCCHHHHHHHHHHHH
Confidence 678877777662 2 45889999999999876555555443221 156789999999999999999988
Q ss_pred HhhcC
Q 013727 104 ALGSG 108 (437)
Q Consensus 104 ~~~~~ 108 (437)
.+...
T Consensus 76 ~~i~~ 80 (477)
T PF03354_consen 76 KMIEA 80 (477)
T ss_pred HHHHh
Confidence 87654
No 253
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.74 E-value=0.022 Score=54.65 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=32.3
Q ss_pred ccEEEEccccccc-ccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHH
Q 013727 158 LKYLVLDEADRLL-NDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRA 208 (437)
Q Consensus 158 ~~~vViDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 208 (437)
.++||+|.+-+.. +......+..+.....+..-++.++||...+....+..
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 4789999995433 23444556666666666666778888876554444443
No 254
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.031 Score=52.80 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=64.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEE-cCc-HHHHHHHHHHHHHhhcCCCcEEEEEEcCCChH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL-SPT-RELAIQISEQFEALGSGISLRCAVLVGGVDMM 123 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl-~P~-~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 123 (437)
..+++.||+|+|||.+..-.+...... .+.++.++ +.+ |..+. ..++.++...++....
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~--------~G~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~-------- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH--------MGKSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYP-------- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh--------cCCeEEEecccchhhhHH---HHHHHHHHhcCCCeee--------
Confidence 347889999999998755444333222 33344433 333 33222 2344443333332211
Q ss_pred HHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccc-ccccHHHHHHHHHhCC---ccceEEEEeecCc
Q 013727 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL-NDDFEKSLDEILNVIP---RMRQTYLFSATMT 199 (437)
Q Consensus 124 ~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~-~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~ 199 (437)
+..+..+...+.. ..+++|+||=+-+.. +......+..++.... +...++.+|||..
T Consensus 285 -------------~~~~~~l~~~l~~------~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~ 345 (432)
T PRK12724 285 -------------VKDIKKFKETLAR------DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS 345 (432)
T ss_pred -------------hHHHHHHHHHHHh------CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC
Confidence 1112223333321 347889999766542 2334445555555542 2235788899987
Q ss_pred h-HHHHHHHHh
Q 013727 200 K-KVKKLQRAC 209 (437)
Q Consensus 200 ~-~~~~~~~~~ 209 (437)
. .+......+
T Consensus 346 ~~~~~~~~~~f 356 (432)
T PRK12724 346 YHHTLTVLKAY 356 (432)
T ss_pred HHHHHHHHHHh
Confidence 6 444444433
No 255
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.0083 Score=57.71 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~ 64 (437)
.+++.||.|+|||.++.+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999986443
No 256
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.015 Score=53.98 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=59.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEE-cCc-HH-HHHHHHHHHHHhhcCCCcEEEEEEcCCC
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL-SPT-RE-LAIQISEQFEALGSGISLRCAVLVGGVD 121 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl-~P~-~~-L~~q~~~~~~~~~~~~~~~~~~~~g~~~ 121 (437)
++.+++.||+|+|||.+..-.+.. +.. .+.++.++ +.+ |. -++|+ +.++...++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~--------~g~~V~lItaDtyR~gAveQL----k~yae~lgvpv~------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLK--------QNRTVGFITTDTFRSGAVEQF----QGYADKLDVELI------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH--------cCCeEEEEeCCccCccHHHHH----HHHhhcCCCCEE-------
Confidence 456789999999999875543332 222 33344444 333 21 23343 334333333221
Q ss_pred hHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccc-ccccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 122 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL-NDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 122 ~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
+..+|..+.+.+.... ....+++|++|=+-+.. +......+..+.....+..-++.+|||..
T Consensus 266 --------------~~~dp~dL~~al~~l~--~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 266 --------------VATSPAELEEAVQYMT--YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred --------------ecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc
Confidence 1234555544443211 12457888888776542 23344445555555444433455666544
No 257
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.69 E-value=0.022 Score=55.33 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=58.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (437)
..+++.|++|+|||.. +..+...+.... ++.+++++.+ .++...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~------~~~~v~yv~~-~~f~~~~~~~l~~~~------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNF------SDLKVSYMSG-DEFARKAVDILQKTH------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhC------CCCeEEEEEH-HHHHHHHHHHHHHhh-------------------
Confidence 4589999999999964 233444443322 4556666555 556555555443200
Q ss_pred HHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccc-ccHHHHHHHHHhCC-ccceEEEEeecCchHH
Q 013727 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIP-RMRQTYLFSATMTKKV 202 (437)
Q Consensus 126 ~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~-~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 202 (437)
...+.+.. .+...+++|+||+|.+... .....+..+++.+. ...|+|+.|-..|...
T Consensus 195 ------------~~~~~~~~--------~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 ------------KEIEQFKN--------EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ------------hHHHHHHH--------HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 00111111 1335778999999976542 23344555555443 3345555444444333
No 258
>PRK09183 transposase/IS protein; Provisional
Probab=96.69 E-value=0.02 Score=51.19 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=18.9
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHH
Q 013727 42 ALEGKDLIGLAQTGSGKTGAFALP 65 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~~~~~ 65 (437)
+..+.++++.||+|+|||..+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 445788999999999999765433
No 259
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.66 E-value=0.0053 Score=53.84 Aligned_cols=85 Identities=29% Similarity=0.333 Sum_probs=62.7
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCC-ChHHHHHHhC-CCCcEEEECchHHHHHHhcCCCCCCCCc
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV-DMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTL 158 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~ 158 (437)
..+.+|||+.+---|..+.+.++.|... +..+.-+.... ...++...+. ...+|.||||+++..++..+ .+.+.++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~-~L~l~~l 202 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG-ALSLSNL 202 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC-CCCcccC
Confidence 5678999999988888999999887421 12333333333 4444555554 36899999999999999765 4789999
Q ss_pred cEEEEcccc
Q 013727 159 KYLVLDEAD 167 (437)
Q Consensus 159 ~~vViDE~h 167 (437)
.+||+|--|
T Consensus 203 ~~ivlD~s~ 211 (252)
T PF14617_consen 203 KRIVLDWSY 211 (252)
T ss_pred eEEEEcCCc
Confidence 999999877
No 260
>PRK05973 replicative DNA helicase; Provisional
Probab=96.66 E-value=0.023 Score=49.70 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=51.7
Q ss_pred cCCCHHHHHHHHhCCCCC----------ChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 013727 13 LGLRDELVEACENVGWKT----------PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (437)
Q Consensus 13 ~~l~~~~~~~l~~~g~~~----------~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 82 (437)
.+|+..+.+.-.+-||.. ++| ..+..--+..|.-++|.|++|+|||...+-.+...+. .+
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~---------~G 92 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK---------SG 92 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh---------cC
Confidence 455666666666678854 344 2333444555678999999999999865443443332 45
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 83 FFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 83 ~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
..++|+.-- +-.+|+.+++..++
T Consensus 93 e~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 93 RTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred CeEEEEEEe-CCHHHHHHHHHHcC
Confidence 557777543 33577778877764
No 261
>PLN03025 replication factor C subunit; Provisional
Probab=96.64 E-value=0.036 Score=51.41 Aligned_cols=40 Identities=20% Similarity=0.473 Sum_probs=24.3
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeec
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
...++||+||+|.+.... ...+...++..+.... ++++++
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~-~il~~n 137 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTR-FALACN 137 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCce-EEEEeC
Confidence 347899999999876533 3445555555444443 444444
No 262
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.64 E-value=0.031 Score=54.39 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=24.9
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
....+++||||+|++....+. .+.+.++.-+++. ++++.+|-.
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~N-aLLK~LEePp~~v-~fIlatte~ 156 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAFN-ALLKTLEEPAPHV-KFILATTEV 156 (491)
T ss_pred cCCceEEEEeChHhCCHHHHH-HHHHHHhCCCCCe-EEEEEeCCh
Confidence 457889999999977654443 3344444444444 334444533
No 263
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.62 E-value=0.021 Score=63.62 Aligned_cols=65 Identities=20% Similarity=0.130 Sum_probs=45.2
Q ss_pred CChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 30 TPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
.+++.|.+++..++.+ +-++|.|..|+|||.+ +-.++..+..... ..+..++.++||---+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~~----~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLPE----SERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhhc----ccCceEEEECCcHHHHHHHH
Confidence 5899999999999975 5689999999999975 2233333321110 13456888999976665443
No 264
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.62 E-value=0.022 Score=54.76 Aligned_cols=37 Identities=27% Similarity=0.245 Sum_probs=23.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS 89 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~ 89 (437)
..+++.||+|+|||... ..+...+.+.. ++..++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~------~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENN------PNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhC------CCCcEEEEE
Confidence 35789999999999753 33444443321 345666664
No 265
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.62 E-value=0.011 Score=56.81 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=79.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH-HHHHHHHHHHHhhcCCCcEEEEEEcCCChHHH
Q 013727 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE-LAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (437)
-.++.|..|||||.+....++..+.... ++.+++++-|+.. |...+...+......+++....-....+.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--- 73 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--- 73 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc---
Confidence 3678999999999998877777776641 3567888888876 55556677765544444432111111100
Q ss_pred HHHhCC-CCcEEEECc-hHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCC--ccceEEEEeecCchH
Q 013727 126 TLALGK-RPHIVVATP-GRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP--RMRQTYLFSATMTKK 201 (437)
Q Consensus 126 ~~~~~~-~~~iiv~Tp-~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~~ 201 (437)
...... +..|++..- +.-.. +. ....++++.+|||..+... .+..++..+. .....+++|.||...
T Consensus 74 ~i~~~~~g~~i~f~g~~d~~~~-ik-----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 74 EIKILNTGKKFIFKGLNDKPNK-LK-----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred EEEecCCCeEEEeecccCChhH-hh-----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 001111 344555443 21111 11 2233689999999977444 3344443333 222247888888653
Q ss_pred HHHHHHHh
Q 013727 202 VKKLQRAC 209 (437)
Q Consensus 202 ~~~~~~~~ 209 (437)
..-+...+
T Consensus 144 ~~w~~~~f 151 (396)
T TIGR01547 144 LHWVKKRF 151 (396)
T ss_pred ccHHHHHH
Confidence 33333333
No 266
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.62 E-value=0.024 Score=57.18 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=92.6
Q ss_pred ccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 013727 12 ELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS 89 (437)
Q Consensus 12 ~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~ 89 (437)
+.+.++..-..+.....+....-|.+.+..++.. +-+++.|+-|=|||.+.-+.+ ..+.... ...+++|.+
T Consensus 196 ~~~~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~------~~~~iiVTA 268 (758)
T COG1444 196 KPPLDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLA------GSVRIIVTA 268 (758)
T ss_pred CCCCCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhc------CCceEEEeC
Confidence 3444444444466666666666666677777765 358889999999998766655 2222211 145799999
Q ss_pred CcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh-CCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccc
Q 013727 90 PTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR 168 (437)
Q Consensus 90 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~ 168 (437)
|+.+=++.+.+.+.+-....+........... ..... .....|=+-+|.... ..-+++|||||=.
T Consensus 269 P~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAa 334 (758)
T COG1444 269 PTPANVQTLFEFAGKGLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAA 334 (758)
T ss_pred CCHHHHHHHHHHHHHhHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc-----------ccCCEEEEehhhc
Confidence 99998888776665543333322111111100 00000 112234455554321 1167899999985
Q ss_pred ccccccHHHHHHHHHhCCccceEEEEeecCch
Q 013727 169 LLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (437)
Q Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 200 (437)
+ -.+.+..++...+ .++||.|+..
T Consensus 335 I----plplL~~l~~~~~----rv~~sTTIhG 358 (758)
T COG1444 335 I----PLPLLHKLLRRFP----RVLFSTTIHG 358 (758)
T ss_pred C----ChHHHHHHHhhcC----ceEEEeeecc
Confidence 4 4556666666543 6888999753
No 267
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.61 E-value=0.0093 Score=61.96 Aligned_cols=72 Identities=25% Similarity=0.248 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 29 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
..|++-|.+++.. ...+++|.|..|||||.+...-+...+.... ....++|+++-|+..+..+.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-----i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-----VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-----CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 4589999999975 3468999999999999986555544443211 1345699999999999999999987754
No 268
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.59 E-value=0.082 Score=50.45 Aligned_cols=131 Identities=14% Similarity=0.193 Sum_probs=65.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcC-c-HHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHH
Q 013727 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP-T-RELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P-~-~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (437)
.++++|++|+|||++..-.+. ++.. .+.++++++. + |.-+ ..+++.++...++++.....+.+...
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~--------~G~kV~lV~~D~~R~aA---~eQLk~~a~~~~vp~~~~~~~~dp~~ 169 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR--------KGFKPCLVCADTFRAGA---FDQLKQNATKARIPFYGSYTESDPVK 169 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH--------CCCCEEEEcCcccchhH---HHHHHHHhhccCCeEEeecCCCCHHH
Confidence 478899999999987543332 2222 3445555543 2 3222 23344444444455433332222110
Q ss_pred HHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc-cccHHHHHHHHHhCCccceEEEEeecCchHHH
Q 013727 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVK 203 (437)
Q Consensus 125 ~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 203 (437)
- ..+.+.. +.-..+++||+|=+-++.. ......+..+.....+...++.++||......
T Consensus 170 i-----------------~~~~l~~---~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~ 229 (429)
T TIGR01425 170 I-----------------ASEGVEK---FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE 229 (429)
T ss_pred H-----------------HHHHHHH---HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH
Confidence 0 0011111 0113467888887765433 23445566666566555567778888765554
Q ss_pred HHHHHh
Q 013727 204 KLQRAC 209 (437)
Q Consensus 204 ~~~~~~ 209 (437)
..+..+
T Consensus 230 ~~a~~F 235 (429)
T TIGR01425 230 AQAKAF 235 (429)
T ss_pred HHHHHH
Confidence 444444
No 269
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.57 E-value=0.00095 Score=55.15 Aligned_cols=124 Identities=19% Similarity=0.160 Sum_probs=51.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHH
Q 013727 49 IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128 (437)
Q Consensus 49 lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 128 (437)
++.|+-|-|||.+.-+.+...+.. ...+++|.+|+.+=++.+.+.+..-....+.+....... ......
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~--------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~ 69 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK--------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKL 69 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------------EEEE-SS--S-HHHHHCC--------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh--------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---cccccc
Confidence 578999999997654433322221 225699999999877777766554433322222000000 000000
Q ss_pred hCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 129 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 129 ~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
...+..|-+..|+.+.. .....+++|||||=.+ -.+.+..++... ..++||.|..
T Consensus 70 ~~~~~~i~f~~Pd~l~~--------~~~~~DlliVDEAAaI----p~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 70 RFNKQRIEFVAPDELLA--------EKPQADLLIVDEAAAI----PLPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp ---CCC--B--HHHHCC--------T----SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred ccccceEEEECCHHHHh--------CcCCCCEEEEechhcC----CHHHHHHHHhhC----CEEEEEeecc
Confidence 11245666777765522 1223588999999954 334455554433 2567788864
No 270
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.045 Score=52.10 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (437)
+..+.+.||||+|||.+....+-..+.... .....++.+.+--. -..+.+..++...++.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~------~~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~--------- 253 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG------ADKVALLTTDSYRI--GGHEQLRIYGKLLGVSVRS--------- 253 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEecCCcch--hHHHHHHHHHHHcCCceec---------
Confidence 456899999999999875433322222111 12234555555222 1222344444333443322
Q ss_pred HHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc-cccHHHHHHHHHhCCccceEEEEeecCchH-H
Q 013727 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKK-V 202 (437)
Q Consensus 125 ~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~ 202 (437)
+.++..+...+. .+.+.+.+++|.+-+.-. ......+..+.....+...++.+|||.... +
T Consensus 254 ------------v~~~~dl~~al~-----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~ 316 (420)
T PRK14721 254 ------------IKDIADLQLMLH-----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL 316 (420)
T ss_pred ------------CCCHHHHHHHHH-----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH
Confidence 122333322222 245578899998753321 122333444433333445578899997543 4
Q ss_pred HHHHHH
Q 013727 203 KKLQRA 208 (437)
Q Consensus 203 ~~~~~~ 208 (437)
......
T Consensus 317 ~~~~~~ 322 (420)
T PRK14721 317 DEVISA 322 (420)
T ss_pred HHHHHH
Confidence 444443
No 271
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.56 E-value=0.028 Score=54.86 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=26.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
..+++.||+|+|||... ..+...+.... ++..++++ +...+..++.
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~------~~~~v~yi-~~~~~~~~~~ 194 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKN------PNAKVVYV-TSEKFTNDFV 194 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC------CCCeEEEE-EHHHHHHHHH
Confidence 45899999999999753 33333333321 34556665 4445544433
No 272
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.55 E-value=0.0056 Score=56.26 Aligned_cols=66 Identities=24% Similarity=0.325 Sum_probs=43.2
Q ss_pred HHHHHhCCCCCChHHHHHHHHhhh-cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 013727 20 VEACENVGWKTPSKIQAEAIPHAL-EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (437)
Q Consensus 20 ~~~l~~~g~~~~~~~Q~~~~~~~~-~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L 94 (437)
+..|.+.|+ +++.|.+.+..+. .++++++.|+||||||.. +-.++..+.... +..+++++-.+.+|
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~------~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD------PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC------CCceEEEEcCCCcc
Confidence 445556675 5677877777654 567899999999999964 333443332111 44567777777766
No 273
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.51 E-value=0.0068 Score=55.58 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=41.9
Q ss_pred HHHhCCCCCChHHHHHHHHhhhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 013727 22 ACENVGWKTPSKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (437)
Q Consensus 22 ~l~~~g~~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L 94 (437)
.+...|. +++.|...+..+.. +.+++++|+||||||.. +-.++..+...+ +..+++.+=.+.||
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~------~~~rivtiEd~~El 186 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA------PEDRLVILEDTAEI 186 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC------CCceEEEecCCccc
Confidence 3445665 56778877776665 57899999999999974 333343332211 44567777777776
No 274
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.013 Score=54.00 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
.+.+++||+|+|||..+
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 47899999999999753
No 275
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.46 E-value=0.027 Score=49.44 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.|++|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999974
No 276
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.45 E-value=0.0093 Score=54.06 Aligned_cols=61 Identities=25% Similarity=0.226 Sum_probs=43.9
Q ss_pred CCCCChHHHHHHHHhhhcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 013727 27 GWKTPSKIQAEAIPHALEGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 97 (437)
Q Consensus 27 g~~~~~~~Q~~~~~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q 97 (437)
.|..+++-|...+..+...+ +++++|.||||||+. +..+...-. +.-+++.+-.|.+|..+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-----LNal~~~i~-----~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-----LNALSGFID-----SDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-----HHHHHhcCC-----CcccEEEEeehhhhccC
Confidence 44478999999998888775 999999999999974 232222111 44478888888777443
No 277
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.44 E-value=0.028 Score=56.01 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=24.4
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
...++++||||+|+|....+.. +.+.++.-+.+..+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNA-LLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNA-MLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHH-HHHhhccCCCCceEEEEe
Confidence 4568899999999886655443 333444444445444443
No 278
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.43 E-value=0.008 Score=59.86 Aligned_cols=126 Identities=14% Similarity=0.120 Sum_probs=75.9
Q ss_pred CChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH-HHHHHhh
Q 013727 30 TPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS-EQFEALG 106 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~-~~~~~~~ 106 (437)
..+|||.+.++.+... +.+.+..++-+|||.+.+..+...+.. ....++++.||..+++.+. ..+..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--------~P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ--------DPGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe--------CCCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 5789999999998765 579999999999999654433333322 3345899999999999876 5666654
Q ss_pred cCCCcEEEEEEc----CCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc
Q 013727 107 SGISLRCAVLVG----GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN 171 (437)
Q Consensus 107 ~~~~~~~~~~~g----~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~ 171 (437)
...+.--..+.. ..........+. +..+.++... +...+.-..++++++||++.+-.
T Consensus 88 ~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~-------S~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 88 RASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGAN-------SPSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCC-------CCcccccCCcCEEEEechhhccc
Confidence 433211111111 111111111222 3344444321 11223455688999999998743
No 279
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.43 E-value=0.0094 Score=54.44 Aligned_cols=66 Identities=26% Similarity=0.356 Sum_probs=41.5
Q ss_pred HHHHHhCCCCCChHHHHHHHHhhhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 013727 20 VEACENVGWKTPSKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (437)
Q Consensus 20 ~~~l~~~g~~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L 94 (437)
++.|.+.|. +++.|...+..+.. +.+++++|+||||||.. +-.++..+.... +..+++++=.+.|+
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~------~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND------PTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC------CCceEEEECCchhh
Confidence 444555564 45556666665554 57899999999999974 333333332211 35577888777776
No 280
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.42 E-value=0.048 Score=47.83 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=33.6
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 43 LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
..+..+++.|++|+|||...+- ++..+.. .+.++++++.. +-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~-~~~~~~~--------~g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQR-LAYGFLQ--------NGYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHH-HHHHHHh--------CCCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 3467899999999999975332 2333322 45567888743 33455555555554
No 281
>PRK04195 replication factor C large subunit; Provisional
Probab=96.42 E-value=0.041 Score=54.22 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
.+.+++.||+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999975
No 282
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.41 E-value=0.05 Score=42.85 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=12.5
Q ss_pred EEEEcCCCchHHHH
Q 013727 48 LIGLAQTGSGKTGA 61 (437)
Q Consensus 48 ~lv~~~tGsGKT~~ 61 (437)
+++.||+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58999999999974
No 283
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.042 Score=54.14 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=25.1
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
..++++||||+|+|....+. .+.+.++.-|.+..+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~n-aLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFN-ALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHHH-HHHHHHhccCCCeEEEEEE
Confidence 46789999999987665443 3444556555555444443
No 284
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.37 E-value=0.048 Score=52.03 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhhhcCCcEEEEcCCCchHHHHH
Q 013727 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 62 (437)
+.......+..+..++++++.||+|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 45566677777788999999999999999764
No 285
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.33 E-value=0.077 Score=52.94 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=47.5
Q ss_pred ChHHHHHHHHhhh---cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 31 PSKIQAEAIPHAL---EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 31 ~~~~Q~~~~~~~~---~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
|+|.=.+-++.+. +.+-.++.+|-|-|||.+..+.+...+.. .+.+++|.+|...-+.++.+.++.+..
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3444444444444 34677889999999998755444433321 346799999999999998888777664
No 286
>PTZ00293 thymidine kinase; Provisional
Probab=96.32 E-value=0.034 Score=47.41 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=25.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~ 92 (437)
|+-.++.||++||||.-.+-. +..... .+..++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~-i~~y~~--------ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRL-VKRFTY--------SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHH-HHHHHH--------cCCceEEEEecc
Confidence 455688999999999754333 332222 556688888853
No 287
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.31 E-value=0.026 Score=54.69 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPI 66 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~ 66 (437)
+.-+++.||||+|||++....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 3468899999999999755433
No 288
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.30 E-value=0.046 Score=48.26 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=36.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
|..+++.||+|+|||...+-.+...+. .+..++|++ +.+-..|+.+.+..++.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~---------~ge~~lyvs-~ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ---------MGEPGIYVA-LEEHPVQVRRNMAQFGW 73 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH---------cCCcEEEEE-eeCCHHHHHHHHHHhCC
Confidence 477999999999999864433333332 455677777 44567777777777654
No 289
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.23 E-value=0.065 Score=55.80 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=27.0
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
...++++||||+|+|....+ ..+.++++..+.+..+|+.+ |-.
T Consensus 118 ~~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred cCCceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEEe-CCh
Confidence 35688999999998865433 34555566665555444443 433
No 290
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.048 Score=54.48 Aligned_cols=41 Identities=29% Similarity=0.480 Sum_probs=24.6
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecC
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
...+++||||+|+|....+. .+.+.++.-+.... +++++|-
T Consensus 117 gk~KV~IIDEVh~LS~~A~N-ALLKtLEEPP~~v~-FILaTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFN-ALLKTLEEPPEHVK-FLFATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHHH-HHHHHHhcCCCCcE-EEEEECC
Confidence 45789999999977554433 34445555444443 4444453
No 291
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.15 E-value=0.076 Score=51.49 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=24.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P 90 (437)
..+++.||+|+|||... ..+...+.... ++.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~------~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNE------PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhC------CCCeEEEEEH
Confidence 46899999999999753 33344443321 3456676654
No 292
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.14 E-value=0.042 Score=53.29 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=37.3
Q ss_pred HHHhhhc-----CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 38 AIPHALE-----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 38 ~~~~~~~-----~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
-++.++. |.-+++.|++|+|||...+ -+...+.. .+.+++|+.- .+-..|+...+.+++
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~l-q~a~~~a~--------~g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLL-QVAARLAA--------AGGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHH-HHHHHHHh--------cCCeEEEEEc-cccHHHHHHHHHHcC
Confidence 3455554 3568999999999997533 33333321 3556888775 445667777776664
No 293
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.13 E-value=0.047 Score=54.24 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=27.9
Q ss_pred CCccEEEEcccccccccc-cHHHHHHHHHhCCc-cceEEEEeecCchHH
Q 013727 156 GTLKYLVLDEADRLLNDD-FEKSLDEILNVIPR-MRQTYLFSATMTKKV 202 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~-~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~ 202 (437)
.++++||||++|.+.... ....+..+++.+.. ..++|+.|-..+..+
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 347889999999775532 33445555555433 456665554444443
No 294
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.13 E-value=0.15 Score=45.95 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=29.3
Q ss_pred CCccEEEEcccccccc-cccHHHHHHHHHhCC------ccceEEEEeecCchHH
Q 013727 156 GTLKYLVLDEADRLLN-DDFEKSLDEILNVIP------RMRQTYLFSATMTKKV 202 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~-~~~~~~~~~i~~~~~------~~~~~i~~SAT~~~~~ 202 (437)
..+++|++|=+-+... ......+..+....+ +...++.++||...+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~ 206 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNA 206 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHH
Confidence 4578899998775532 334445666655544 4455788888865543
No 295
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.12 E-value=0.055 Score=52.36 Aligned_cols=49 Identities=8% Similarity=0.160 Sum_probs=27.7
Q ss_pred CCccEEEEcccccccccc-cHHHHHHHHHhC-CccceEEEEeecCchHHHH
Q 013727 156 GTLKYLVLDEADRLLNDD-FEKSLDEILNVI-PRMRQTYLFSATMTKKVKK 204 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~ 204 (437)
...+++++||+|.+.... ....+..+++.+ ....++++.|-+.+..+..
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 347889999999775532 233444444432 2345565555555555443
No 296
>PF13173 AAA_14: AAA domain
Probab=96.12 E-value=0.069 Score=42.02 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=26.0
Q ss_pred CccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 157 ~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
.-.+|++||+|.+ .++...+..+.... +..++ ++|++..
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~-~~~~i-i~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNG-PNIKI-ILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhc-cCceE-EEEccch
Confidence 3567999999977 45777888887755 23444 4455433
No 297
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.07 E-value=0.075 Score=47.77 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=30.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCC---CCCeEEEEEcCcHHHHHHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRT---VPAFFACVLSPTRELAIQISEQF 102 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~---~~~~~~lvl~P~~~L~~q~~~~~ 102 (437)
.++++.|+||-|||.. +..+......... ...+.+++-+|...-..-.+..+
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 5799999999999983 4555543322111 12244556677765555555443
No 298
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.07 E-value=0.06 Score=53.46 Aligned_cols=134 Identities=20% Similarity=0.207 Sum_probs=79.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC--CcEEEEEEcCCCh
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI--SLRCAVLVGGVDM 122 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~ 122 (437)
.+-.++..|--.|||.... +++..+.... .+.+++|.+|.+..++.+.+++..+.... +-.+....| ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATF------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI 325 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhC------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE
Confidence 3567888999999998655 5555554332 67889999999999999998887765421 111212222 110
Q ss_pred HHHHHHhCCC--CcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 123 MQQTLALGKR--PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 123 ~~~~~~~~~~--~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
...+..+ ..|.++|- .+.....=..++++|+|||+-+-+..+...+ -.+.. .++++|.+|.|-+
T Consensus 326 ---~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~Ns 391 (738)
T PHA03368 326 ---SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTNT 391 (738)
T ss_pred ---EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCCC
Confidence 0011112 24555531 1222234457999999999966554333333 22222 3677888887743
No 299
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.014 Score=53.91 Aligned_cols=35 Identities=11% Similarity=-0.032 Sum_probs=28.0
Q ss_pred CChHHHHHHHHhhhcC----CcEEEEcCCCchHHHHHHH
Q 013727 30 TPSKIQAEAIPHALEG----KDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~----~~~lv~~~tGsGKT~~~~~ 64 (437)
.+.|||...|..+... +..++.||.|.|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 3579999999998864 3578999999999976443
No 300
>CHL00181 cbbX CbbX; Provisional
Probab=96.03 E-value=0.092 Score=47.71 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~ 63 (437)
+.++++.||+|+|||..+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468999999999998644
No 301
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.01 E-value=0.042 Score=56.50 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=66.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHh----cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-CCCCCCCCCCCCEEE
Q 013727 252 SASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMVI 326 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~Gid~~~~~~Vi 326 (437)
.+.+++|.++++..|...++.++. .++++..++|+++..+|..++..+.+|+++|+|+|. .+...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 567899999999999887776654 468899999999999999999999999999999997 455667888899888
Q ss_pred EecC
Q 013727 327 NYDI 330 (437)
Q Consensus 327 ~~~~ 330 (437)
.-..
T Consensus 389 IDE~ 392 (681)
T PRK10917 389 IDEQ 392 (681)
T ss_pred Eech
Confidence 6443
No 302
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.00 E-value=0.066 Score=50.44 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
|.-+++.|++|+|||...+ -+...+.. .+.+++|+.-. +-..|+...+.+++
T Consensus 82 GslvLI~G~pG~GKStLll-q~a~~~a~--------~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLL-QVAARLAK--------RGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CeEEEEEeCCCCCHHHHHH-HHHHHHHh--------cCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 3568999999999997533 23333322 34567887654 44567766666654
No 303
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.00 E-value=0.13 Score=51.97 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=22.3
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEE
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTY 192 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 192 (437)
..++++||||+|+|....+... .+.++.-+.+..+|
T Consensus 118 g~~KV~IIDEah~Ls~~a~NAL-LKtLEEPp~~v~FI 153 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNAL-LKTLEEPPEHVKFL 153 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHH-HHHHHcCCCCeEEE
Confidence 4678999999998766554443 33455444444333
No 304
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.97 E-value=0.068 Score=48.00 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
.++++.||+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47899999999999764
No 305
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.96 E-value=0.037 Score=50.84 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=28.9
Q ss_pred CCCChHHHHHHHHhhhc----C---CcEEEEcCCCchHHHHHHH
Q 013727 28 WKTPSKIQAEAIPHALE----G---KDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 28 ~~~~~~~Q~~~~~~~~~----~---~~~lv~~~tGsGKT~~~~~ 64 (437)
+..++|||..++..+.. + +-.++.||.|+||+..+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 35688999999988874 3 2488999999999976443
No 306
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.95 E-value=0.023 Score=49.84 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCc-----EEEEEEcC
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISL-----RCAVLVGG 119 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~-----~~~~~~g~ 119 (437)
|..+++.|++|+|||...+-.+...+.. .+..++|++- .+-..++.+.++.++....- ....+...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~--------~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN--------FGEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH--------HT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh--------cCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 4789999999999997644444444442 1445777764 34456777777766432100 01111000
Q ss_pred CChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc----cccHHHHHHHHHhCCccceEEEEe
Q 013727 120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN----DDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 120 ~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~----~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
...... . -..++.+...+... +.-...+.+|+|-...+.. ..++..+..+...+.....+.+++
T Consensus 90 -~~~~~~-------~--~~~~~~l~~~i~~~--i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt 157 (226)
T PF06745_consen 90 -PERIGW-------S--PNDLEELLSKIREA--IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLT 157 (226)
T ss_dssp -GGGST--------T--SCCHHHHHHHHHHH--HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEE
T ss_pred -cccccc-------c--ccCHHHHHHHHHHH--HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 000000 0 11223333333221 0111237899999887622 334556666766665555566666
Q ss_pred ec
Q 013727 196 AT 197 (437)
Q Consensus 196 AT 197 (437)
+.
T Consensus 158 ~~ 159 (226)
T PF06745_consen 158 SE 159 (226)
T ss_dssp EE
T ss_pred Ec
Confidence 66
No 307
>PRK10867 signal recognition particle protein; Provisional
Probab=95.94 E-value=0.25 Score=47.44 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=15.5
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFALPI 66 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~ 66 (437)
-++++|++|+|||++..-.+
T Consensus 102 vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47889999999998754433
No 308
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.93 E-value=0.093 Score=46.06 Aligned_cols=53 Identities=19% Similarity=0.064 Sum_probs=32.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
.|..+++.|++|+|||...+..+.+.+. .+..++++.. .+..+++.+.++.++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~---------~g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR---------DGDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh---------cCCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 3578999999999999754433333332 3445666654 334456655555544
No 309
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.92 E-value=0.02 Score=62.87 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=74.5
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 109 (437)
++|+-|.+++. ..+++++|.|..|||||.+..--++..+... ....++++++=|+..+..+.+++..-....
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 36889999998 4578999999999999998666666655432 133568999999999998888776643210
Q ss_pred CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCC-CccEEEEccccc
Q 013727 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLG-TLKYLVLDEADR 168 (437)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~-~~~~vViDE~h~ 168 (437)
+. ...........+..-...-|+|...+...+-+.....+. +..+=|.||...
T Consensus 73 -~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 -LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred -Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 000111111222222456788888775544332211110 112345777663
No 310
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.17 Score=44.94 Aligned_cols=130 Identities=16% Similarity=0.140 Sum_probs=70.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHH
Q 013727 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 126 (437)
-+|+.||+|+||+.. .-+++ . ....+.+-+.+..|+..|.-+-+++...
T Consensus 168 giLLyGPPGTGKSYL--AKAVA---T--------EAnSTFFSvSSSDLvSKWmGESEkLVkn------------------ 216 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYL--AKAVA---T--------EANSTFFSVSSSDLVSKWMGESEKLVKN------------------ 216 (439)
T ss_pred eEEEeCCCCCcHHHH--HHHHH---h--------hcCCceEEeehHHHHHHHhccHHHHHHH------------------
Confidence 589999999999963 22222 1 1224677788888888776555544211
Q ss_pred HHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccc---c----HHHHHHHHHhC----CccceEEEEe
Q 013727 127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD---F----EKSLDEILNVI----PRMRQTYLFS 195 (437)
Q Consensus 127 ~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~---~----~~~~~~i~~~~----~~~~~~i~~S 195 (437)
|..+.+.++ .++|.|||+|.+.... - +..-..++-.+ ...--++.+.
T Consensus 217 ----------------LFemARe~k------PSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 217 ----------------LFEMARENK------PSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred ----------------HHHHHHhcC------CcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 223333332 5679999999665421 1 11112222222 1233578889
Q ss_pred ecCchHHHH-HHHHhcCCCcEEEcccccccccCce
Q 013727 196 ATMTKKVKK-LQRACLKNPVKIEAASKYSTVDTLK 229 (437)
Q Consensus 196 AT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (437)
||-.+++-+ ..+.-+...+.+.....+.....+.
T Consensus 275 ATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~ 309 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFK 309 (439)
T ss_pred cCCCchhHHHHHHHHhhcceeccCCcHHHhhhhhe
Confidence 997776543 3344445544444444443333333
No 311
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.081 Score=53.11 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=24.5
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecC
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
...++++||||+|+|....+.. +.+.++.-+....+ ++.+|-
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~Na-LLKtLEEPP~~~~f-IL~Ttd 163 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFNA-MLKTLEEPPEYLKF-VLATTD 163 (618)
T ss_pred cCCceEEEEEChhhCCHHHHHH-HHHhcccCCCCeEE-EEEECC
Confidence 3568899999999876655443 33334443444434 344453
No 312
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.87 E-value=0.082 Score=54.29 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=65.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHh-cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRN-LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI 330 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~ 330 (437)
.+.++||.+++++.+.++.+.|++ .+..+..+||+++..+|.+.+....+|+.+|+|+|.... -..+.++..||..+.
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEECC
Confidence 467899999999999999998876 477899999999999999999999999999999997432 256778888876553
No 313
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.04 Score=52.11 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=21.9
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEE
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYL 193 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 193 (437)
....+++|+||+|.+....+.. +...++.-+....+++
T Consensus 117 ~~~~kviIIDEa~~l~~~a~na-LLk~lEe~~~~~~fIl 154 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSFNA-LLKTLEEPPQHIKFIL 154 (363)
T ss_pred cCCceEEEEEChhhcCHHHHHH-HHHHHhcCCCCeEEEE
Confidence 3457899999999876543333 3333444444443444
No 314
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.82 E-value=0.12 Score=51.88 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=24.3
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
+...++|||||+|.+....+. .+.+.++.-+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~n-aLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAFN-ALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHHH-HHHHHHHhCCCCeEEEEEe
Confidence 456889999999987654333 3344455555555444433
No 315
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.82 E-value=0.12 Score=52.20 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
....+++||||+|++....+. .+.+.++..+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~N-ALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAFN-AMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHHH-HHHHHHHhCCCCcEEEEEe
Confidence 356789999999976543333 3444555545555444443
No 316
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.81 E-value=0.21 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=16.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHH
Q 013727 48 LIGLAQTGSGKTGAFALPILQALL 71 (437)
Q Consensus 48 ~lv~~~tGsGKT~~~~~~~~~~l~ 71 (437)
++|.|+||+|||.+.-. ++..+.
T Consensus 784 LYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHH
Confidence 35999999999987433 444443
No 317
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.79 E-value=0.34 Score=46.58 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=15.6
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFALPI 66 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~ 66 (437)
.++++|++|+|||++..-.+
T Consensus 101 vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47889999999998754433
No 318
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.79 E-value=0.021 Score=47.81 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=26.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 98 (437)
.++++++.||+|+|||..+.. +...+.. .+..+++ ++..+|...+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~a-i~~~~~~--------~g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVA-IANEAIR--------KGYSVLF-ITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHH-HHHHHHH--------TT--EEE-EEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHH-HHHHhcc--------CCcceeE-eecCceeccc
Confidence 467899999999999986544 3333433 3444555 4555665554
No 319
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.76 E-value=0.026 Score=48.31 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
.+++++||+|.|||..
T Consensus 51 ~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTL 66 (233)
T ss_dssp -EEEEESSTTSSHHHH
T ss_pred ceEEEECCCccchhHH
Confidence 3789999999999974
No 320
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.76 E-value=0.079 Score=51.98 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~ 64 (437)
+.+++.||.|+|||.++-+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999986543
No 321
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.76 E-value=0.027 Score=52.84 Aligned_cols=26 Identities=31% Similarity=0.155 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALL 71 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~ 71 (437)
+..++++||||||||.. +..++.++.
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 34689999999999975 344555554
No 322
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.73 E-value=0.048 Score=62.28 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=43.9
Q ss_pred CChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 013727 30 TPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 98 (437)
.+++.|+.++..++.+ +-++|.|..|+|||.+.. .++..+...... .+..++.++||-.-+..+
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~-~~~~~i~~~~~~----~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLE-SRYKPVLQAFES----EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHH-HHHHHHHHHHHh----cCCeEEEEeChHHHHHHH
Confidence 6999999999998865 457889999999997531 111222211111 466788899996665554
No 323
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.72 E-value=0.025 Score=51.25 Aligned_cols=19 Identities=32% Similarity=0.316 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~ 64 (437)
+.+++.||||+|||.+...
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999987543
No 324
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.71 E-value=0.13 Score=49.88 Aligned_cols=147 Identities=12% Similarity=0.033 Sum_probs=85.6
Q ss_pred CChHHHHHHHHhhhc------C----CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 30 TPSKIQAEAIPHALE------G----KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~------~----~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
.+-|||.-++..+.. + +.+++..|-+-|||..+...+...++-... .+..+.|++|+.+-+.+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~-----~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR-----SGAGIYILAPSVEQAANSF 135 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh-----cCCcEEEEeccHHHHHHhh
Confidence 489999999999883 1 357999999999998655344443332221 6777899999999888888
Q ss_pred HHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCC-Cc--EEEECchHHHHHHh-cCCCCCCCCccEEEEcccccccccccH
Q 013727 100 EQFEALGSGISLRCAVLVGGVDMMQQTLALGKR-PH--IVVATPGRLMDHLT-NTKGFSLGTLKYLVLDEADRLLNDDFE 175 (437)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~--iiv~Tp~~l~~~l~-~~~~~~~~~~~~vViDE~h~~~~~~~~ 175 (437)
..++......+ +. ....... .. |...--...+..+. .....+-.+..+.|+||.|......
T Consensus 136 ~~ar~mv~~~~----------~l---~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 136 NPARDMVKRDD----------DL---RDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred HHHHHHHHhCc----------ch---hhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--
Confidence 88776643322 00 0011111 11 22211111122222 1222355667889999999765542
Q ss_pred HHHHHHHHhCC--ccceEEEEee
Q 013727 176 KSLDEILNVIP--RMRQTYLFSA 196 (437)
Q Consensus 176 ~~~~~i~~~~~--~~~~~i~~SA 196 (437)
..+..+...+. +..+++..|.
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEec
Confidence 45555554443 3445555554
No 325
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.70 E-value=0.085 Score=52.10 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=64.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHh-cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEec
Q 013727 252 SASSTMVFTRTCDATRLLALMLRN-LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD 329 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~ 329 (437)
.+.++||.++++..+..+++.|++ .+..+..+||+++..+|.+......+|+.+|+|+|...-. ..++++..||..+
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 467899999999999999988875 4678899999999999999999999999999999974322 4577788887654
No 326
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.64 E-value=0.12 Score=48.44 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=24.8
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeec
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
...++||+||+|.+.. .....+..+++..+....+|+ +++
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEE-EeC
Confidence 4567899999997643 333445566666555555444 444
No 327
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.63 E-value=0.037 Score=55.26 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~ 64 (437)
+..|+.||.|+|||.++-+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999986543
No 328
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.61 E-value=0.91 Score=37.75 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=25.6
Q ss_pred CccEEEEccccccc-ccccHHHHHHHHHhCCccceEEEEeecCchHHHH
Q 013727 157 TLKYLVLDEADRLL-NDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKK 204 (437)
Q Consensus 157 ~~~~vViDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 204 (437)
..++||+|...... +......+..+........-++.+++........
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~ 130 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVN 130 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHH
Confidence 46788999988542 2233344444444433444456666654443333
No 329
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.58 E-value=0.11 Score=52.80 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=75.6
Q ss_pred CCChHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhc-C-CceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC
Q 013727 237 AKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNL-G-QRAIPISGHMSQSKRLGALNKFKAGECNILICTDV 312 (437)
Q Consensus 237 ~~~~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 312 (437)
...|...+..++... .+..+||.++.+..+..+.+.|+.. + ..+..+|+++++.+|.+......+|+.+|+|.|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 345666666666544 5778999999999999999999865 3 57899999999999999999999999999999975
Q ss_pred CCCCCCCCCCCEEEEecC
Q 013727 313 ASRGLDIPSVDMVINYDI 330 (437)
Q Consensus 313 ~~~Gid~~~~~~Vi~~~~ 330 (437)
+. -.-++++..||..+-
T Consensus 250 Av-FaP~~~LgLIIvdEE 266 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWDD 266 (665)
T ss_pred eE-EeccCCCCEEEEEcC
Confidence 33 367778888887664
No 330
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.15 Score=49.67 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~ 63 (437)
.+++.||+|+|||..+-
T Consensus 38 ~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 38 AYIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999998643
No 331
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.55 E-value=0.32 Score=42.86 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=33.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
|.-+++.|++|+|||......+...+. .+.+++|+.-. +-..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~---------~g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK---------QGKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh---------CCCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 467899999999999754433333332 45567777654 33456677777764
No 332
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.54 E-value=0.072 Score=54.37 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=66.6
Q ss_pred CCCcEEEEecchHHHHHHHHHHHh----cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-CCCCCCCCCCCCEEE
Q 013727 252 SASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMVI 326 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~Gid~~~~~~Vi 326 (437)
.+.++++.++++..|...++.+++ .++++..++|+++..+|..++....+|+.+|+|+|. .+...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 467899999999999888776664 478999999999999999999999999999999998 455667888888888
Q ss_pred EecC
Q 013727 327 NYDI 330 (437)
Q Consensus 327 ~~~~ 330 (437)
.-..
T Consensus 363 IDEa 366 (630)
T TIGR00643 363 IDEQ 366 (630)
T ss_pred Eech
Confidence 5443
No 333
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.52 E-value=0.073 Score=52.90 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~ 63 (437)
+..|+.||.|+|||..+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~ 56 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAK 56 (605)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999998644
No 334
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.51 E-value=0.26 Score=47.28 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
.++++.||+|+|||.+
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999975
No 335
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.49 E-value=0.042 Score=46.90 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCCCccEEEEcccccccccccHHHHHHHHHhCCccceEE
Q 013727 154 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTY 192 (437)
Q Consensus 154 ~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 192 (437)
.-.+.+.||+||||.|.+ +-...+.+..+...+..++.
T Consensus 110 p~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFa 147 (333)
T KOG0991|consen 110 PPGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFA 147 (333)
T ss_pred CCCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhh
Confidence 346678899999997755 33344555555544444433
No 336
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.49 E-value=0.1 Score=53.95 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=23.9
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
..++++||||+|+|....+ ..+.++++.-+....+|+ ..|-+
T Consensus 118 gk~KViIIDEAh~LT~eAq-NALLKtLEEPP~~vrFIL-aTTe~ 159 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF-NALLKTLEEPPEHVKFLL-ATTDP 159 (944)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhccCCCeEEEE-ECCCc
Confidence 4578999999998754333 334444454444443333 34433
No 337
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.46 E-value=0.16 Score=48.68 Aligned_cols=18 Identities=33% Similarity=0.254 Sum_probs=15.0
Q ss_pred cEEEEcCCCchHHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~ 64 (437)
.++++||+|+|||.++.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999987543
No 338
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.38 E-value=0.034 Score=52.09 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALL 71 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~ 71 (437)
.+..++++||||||||.. +..++..+.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 456799999999999975 333444443
No 339
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.38 E-value=0.26 Score=49.33 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=24.0
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
....+++||||+|+|....+. .+...++.-+....+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~N-ALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFN-ALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHHHH-HHHHHHhcCCCCeEEEEEe
Confidence 456889999999977654333 3444455544444344433
No 340
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.38 E-value=0.21 Score=50.20 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=24.5
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeec
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
...++++||||+|++....+ ..+.+.++.-+.+..+| +.+|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~-naLLk~LEepp~~~~fI-l~t~ 157 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAF-NALLKTLEEPPPHVKFI-FATT 157 (576)
T ss_pred cCCceEEEEEChhhCCHHHH-HHHHHHHHcCCCCeEEE-EEeC
Confidence 45688999999997765433 33444555544444343 4445
No 341
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.37 E-value=0.099 Score=46.80 Aligned_cols=53 Identities=8% Similarity=-0.070 Sum_probs=30.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc---HHHHHHHHHHHHHh
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT---RELAIQISEQFEAL 105 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~---~~L~~q~~~~~~~~ 105 (437)
.|.-++|.|++|+|||...+-.+...+. .+.+++|+.-- ..+..++......+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~---------~Ge~vlyis~Ee~~~~~~~~l~~~a~~~ 90 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS---------RGNPVLFVTVESPANFVYTSLKERAKAM 90 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh---------CCCcEEEEEecCCchHHHHHHHHHHHHc
Confidence 3567899999999999754433333222 44567777632 33333444444444
No 342
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.36 E-value=0.026 Score=53.99 Aligned_cols=39 Identities=28% Similarity=0.305 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhhcCCc--EEEEcCCCchHHHHHHHHHHHHHH
Q 013727 32 SKIQAEAIPHALEGKD--LIGLAQTGSGKTGAFALPILQALL 71 (437)
Q Consensus 32 ~~~Q~~~~~~~~~~~~--~lv~~~tGsGKT~~~~~~~~~~l~ 71 (437)
.+.|...+..+++... +|+.||||||||.+ +..++..+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 6677777777776643 78899999999976 444555444
No 343
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.35 E-value=0.17 Score=46.39 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~ 63 (437)
++.+++.||+|+|||..+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999997543
No 344
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.33 E-value=0.25 Score=40.29 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=39.5
Q ss_pred CCCCccEEEEccccccccccc--HHHHHHHHHhCCccceEEEEeecCchHHHHHHH
Q 013727 154 SLGTLKYLVLDEADRLLNDDF--EKSLDEILNVIPRMRQTYLFSATMTKKVKKLQR 207 (437)
Q Consensus 154 ~~~~~~~vViDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 207 (437)
....+++||+||+-..+..++ ...+..+++..|...-+|+.+-.+|+++...++
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 346789999999997766544 455777778777777777777777877766554
No 345
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.25 E-value=0.13 Score=48.62 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=30.9
Q ss_pred CccEEEEccccccccc-ccHHHHHHHHHhCCc-cceEEEEeecCchHHH
Q 013727 157 TLKYLVLDEADRLLND-DFEKSLDEILNVIPR-MRQTYLFSATMTKKVK 203 (437)
Q Consensus 157 ~~~~vViDE~h~~~~~-~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~ 203 (437)
.++++++|.++.+... .....+..+++.+.. ..|+++.|-.+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 5889999999976653 344555555555543 4477777766666544
No 346
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.24 E-value=0.026 Score=52.45 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=28.4
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELA 95 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 95 (437)
..++++++.||||||||.. +-.++..+. ...+++.+=++.||.
T Consensus 160 ~~~~nilI~G~tGSGKTTl-l~aLl~~i~---------~~~rivtiEd~~El~ 202 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTM-SKTLISAIP---------PQERLITIEDTLELV 202 (344)
T ss_pred HcCCeEEEECCCCccHHHH-HHHHHcccC---------CCCCEEEECCCcccc
Confidence 4568999999999999974 333333221 344567777776663
No 347
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.23 E-value=0.14 Score=45.27 Aligned_cols=41 Identities=17% Similarity=-0.052 Sum_probs=26.7
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 013727 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P 90 (437)
+..|.-+++.|+||+|||...+-.+...+.. .+..+++++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEeC
Confidence 3456778999999999997543333333332 2556788764
No 348
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.23 E-value=0.78 Score=41.29 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=22.9
Q ss_pred CChHHHHHHHHhhh----cCC-cEEEEcCCCchHHHH
Q 013727 30 TPSKIQAEAIPHAL----EGK-DLIGLAQTGSGKTGA 61 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~----~~~-~~lv~~~tGsGKT~~ 61 (437)
.+++.+.+++..+. .+. .+++.||+|+|||+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 35666666776653 223 588999999999975
No 349
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.21 E-value=0.12 Score=49.80 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
.++++.||+|+|||..+
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47899999999999753
No 350
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.20 E-value=0.12 Score=53.17 Aligned_cols=17 Identities=35% Similarity=0.329 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
.++++.||+|+|||..+
T Consensus 53 ~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 53 GSLILYGPPGVGKTTLA 69 (725)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999753
No 351
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.20 E-value=0.076 Score=49.39 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=24.5
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeec
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
.....+||+||||.|.. +-...+...++.-+... .+++++.
T Consensus 107 ~~~~kviiidead~mt~-~A~nallk~lEep~~~~-~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLTE-DAANALLKTLEEPPKNT-RFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCe-EEEEEcC
Confidence 36688999999997755 33334444444444444 4444444
No 352
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.19 E-value=0.18 Score=41.64 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=38.3
Q ss_pred CCCccEEEEcccccccccccH--HHHHHHHHhCCccceEEEEeecCchHHHHHHHH
Q 013727 155 LGTLKYLVLDEADRLLNDDFE--KSLDEILNVIPRMRQTYLFSATMTKKVKKLQRA 208 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 208 (437)
-..+++||+||+-..++.++. ..+..++...|....+|+..-.+|+.+...++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 456899999999977775543 456677777777776666666677776665553
No 353
>PRK10436 hypothetical protein; Provisional
Probab=95.18 E-value=0.048 Score=52.85 Aligned_cols=37 Identities=32% Similarity=0.346 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhc--CCcEEEEcCCCchHHHHHHHHHHHHH
Q 013727 33 KIQAEAIPHALE--GKDLIGLAQTGSGKTGAFALPILQAL 70 (437)
Q Consensus 33 ~~Q~~~~~~~~~--~~~~lv~~~tGsGKT~~~~~~~~~~l 70 (437)
+.|.+.+..+.. +--+++.||||||||.+. ..++..+
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 345555554443 345899999999999863 3344443
No 354
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.27 Score=45.53 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=26.1
Q ss_pred ChHHHHHHHHhhhcC-----CcEEEEcCCCchHHHHHHH
Q 013727 31 PSKIQAEAIPHALEG-----KDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~~-----~~~lv~~~tGsGKT~~~~~ 64 (437)
++|||...|..+... +..++.||.|.|||..+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 368888888887742 3578999999999976443
No 355
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.12 E-value=0.1 Score=42.99 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=27.7
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
...+++|+||+|.|... -...+.+.++.-+....++++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 56889999999977553 34455666676666665555555443
No 356
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.09 E-value=0.18 Score=49.59 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=42.0
Q ss_pred HHHHHhhhcC-----CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 36 AEAIPHALEG-----KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 36 ~~~~~~~~~~-----~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
..-++.++.| ..+++.||+|+|||+..+-.+...+. .+.+++|++ ..+-..|+.+.++.++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~---------~ge~~~y~s-~eEs~~~i~~~~~~lg~ 315 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA---------NKERAILFA-YEESRAQLLRNAYSWGI 315 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH---------CCCeEEEEE-eeCCHHHHHHHHHHcCC
Confidence 3445666643 67899999999999854433333222 455677776 56777888888888753
No 357
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.08 E-value=0.25 Score=46.81 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=17.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQAL 70 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l 70 (437)
..+++.||+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999753 3334443
No 358
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.06 E-value=0.63 Score=44.07 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=62.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH-HHHHH---HHHHHHhhcC-CCcEEEEEEcCCChH
Q 013727 49 IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE-LAIQI---SEQFEALGSG-ISLRCAVLVGGVDMM 123 (437)
Q Consensus 49 lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~-L~~q~---~~~~~~~~~~-~~~~~~~~~g~~~~~ 123 (437)
++.++.|+|||......++..+...+ ....++++ |+.. +...+ ...+..+... ..+.........-
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP------PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI-- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE--
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE--
Confidence 46789999999988777777766532 22445555 6654 44432 2333333333 1222111111100
Q ss_pred HHHHHhCCCCcEEEECchH--HHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCc--
Q 013727 124 QQTLALGKRPHIVVATPGR--LMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT-- 199 (437)
Q Consensus 124 ~~~~~~~~~~~iiv~Tp~~--l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-- 199 (437)
.+..+..|.+.+-+. -...+.. ..+++|++||+-.+.+..+...+........... .+.+|.|+.
T Consensus 72 ----~~~nG~~i~~~~~~~~~~~~~~~G------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~ 140 (384)
T PF03237_consen 72 ----ILPNGSRIQFRGADSPDSGDNIRG------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPG 140 (384)
T ss_dssp ----EETTS-EEEEES-----SHHHHHT------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SS
T ss_pred ----EecCceEEEEeccccccccccccc------cccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCC
Confidence 113445566665321 1122222 3478999999887766555555444444333222 224454433
Q ss_pred hHHHHHHHHhcCC
Q 013727 200 KKVKKLQRACLKN 212 (437)
Q Consensus 200 ~~~~~~~~~~~~~ 212 (437)
.....+.......
T Consensus 141 ~~~~~~~~~~~~~ 153 (384)
T PF03237_consen 141 GWFYEIFQRNLDD 153 (384)
T ss_dssp SHHHHHHHHHHCT
T ss_pred CceeeeeehhhcC
Confidence 3333444434333
No 359
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.06 E-value=0.067 Score=49.61 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=27.0
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L 94 (437)
..+++++++|+||||||.. +-.++..+- ...+++.+=.+.||
T Consensus 158 ~~~~nili~G~tgSGKTTl-l~aL~~~ip---------~~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTF-TNAALREIP---------AIERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHH-HHHHHhhCC---------CCCeEEEecCCCcc
Confidence 3568999999999999974 333333332 34566665555554
No 360
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.00 E-value=0.17 Score=49.90 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=25.3
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
....+++|+||+|+|....+ ..+...++.-|....+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A~-NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEAF-NALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHHH-HHHHHHHhhcCCceEEEEEE
Confidence 45688999999998755433 33455555555555555444
No 361
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.076 Score=53.06 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~ 64 (437)
+.+|+.||.|+|||.++.+
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4578899999999987544
No 362
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=94.98 E-value=0.045 Score=50.93 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=44.7
Q ss_pred CccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 013727 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (437)
Q Consensus 9 ~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lv 87 (437)
++..+.....-.+.|...|+ +++.+.+.+..+.. +.++++.|+||||||... -.++..+. +..++++
T Consensus 143 ~IR~~~~~~~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~---------~~~riv~ 210 (340)
T TIGR03819 143 SLRVPRPRTFTLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVA---------PDERIVL 210 (340)
T ss_pred EEEeeCCccCCHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCC---------CCCcEEE
Confidence 34443333333555666776 55677777776655 569999999999999742 22222221 3445667
Q ss_pred EcCcHHH
Q 013727 88 LSPTREL 94 (437)
Q Consensus 88 l~P~~~L 94 (437)
+-.+.||
T Consensus 211 iEd~~El 217 (340)
T TIGR03819 211 VEDAAEL 217 (340)
T ss_pred ECCccee
Confidence 6666666
No 363
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.96 E-value=0.27 Score=46.56 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHhCCCCC--ChH-HHHHHH----HhhhcCCcEEEEcCCCchHHHHHHH
Q 013727 14 GLRDELVEACENVGWKT--PSK-IQAEAI----PHALEGKDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 14 ~l~~~~~~~l~~~g~~~--~~~-~Q~~~~----~~~~~~~~~lv~~~tGsGKT~~~~~ 64 (437)
...+|+.=.|.++||+. ++. .+...+ +.+-.+.+++..||+|+|||..|..
T Consensus 171 T~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 171 TLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred CHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 34457777788899863 222 111112 4445678999999999999976654
No 364
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.083 Score=48.67 Aligned_cols=57 Identities=32% Similarity=0.458 Sum_probs=34.4
Q ss_pred ccccCccccCCCHHHHHHHHhC------CCC--C---C----hHHHHHHH-----HhhhcC-----CcEEEEcCCCchHH
Q 013727 5 KEVKTFKELGLRDELVEACENV------GWK--T---P----SKIQAEAI-----PHALEG-----KDLIGLAQTGSGKT 59 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~------g~~--~---~----~~~Q~~~~-----~~~~~~-----~~~lv~~~tGsGKT 59 (437)
.+...|+.++...++.++|+.- ++. . + .-.++.++ |...+| +.+|..||+|+|||
T Consensus 180 ~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKT 259 (491)
T KOG0738|consen 180 GEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKT 259 (491)
T ss_pred cccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHH
Confidence 3556789999888888888641 110 0 1 11112111 222233 67999999999999
Q ss_pred HH
Q 013727 60 GA 61 (437)
Q Consensus 60 ~~ 61 (437)
+.
T Consensus 260 lL 261 (491)
T KOG0738|consen 260 LL 261 (491)
T ss_pred HH
Confidence 73
No 365
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.93 E-value=0.13 Score=50.70 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~ 63 (437)
.+++.||+|+|||.++.
T Consensus 38 a~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 38 AYLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35999999999998644
No 366
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.29 Score=49.38 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~ 64 (437)
+..|+.||.|+|||.++.+
T Consensus 39 ha~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3588999999999987543
No 367
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.91 E-value=0.091 Score=53.35 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=37.3
Q ss_pred ccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCch
Q 013727 158 LKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (437)
Q Consensus 158 ~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 200 (437)
.-++|+|..|.+.++..-..+..+++..|++-+.++.|-+-|+
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 3589999999999999999999999999999988888876543
No 368
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.90 E-value=0.15 Score=46.28 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~ 62 (437)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 347999999999999864
No 369
>PHA00012 I assembly protein
Probab=94.87 E-value=0.8 Score=41.68 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHH
Q 013727 48 LIGLAQTGSGKTGAFALPILQALL 71 (437)
Q Consensus 48 ~lv~~~tGsGKT~~~~~~~~~~l~ 71 (437)
.++.|..|||||+.+..-+...+.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 588999999999986665555544
No 370
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.84 E-value=0.41 Score=46.38 Aligned_cols=68 Identities=18% Similarity=0.014 Sum_probs=37.5
Q ss_pred CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 013727 27 GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (437)
Q Consensus 27 g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 103 (437)
|+....+.=.+.+.-+..|.-+++.|+||+|||...+-.+...... .+..++|++. ..-..|+..++-
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~--------~g~~v~~fSl-Em~~~~l~~Rl~ 243 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR--------EGKPVLFFSL-EMSAEQLGERLL 243 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEEC-CCCHHHHHHHHH
Confidence 4444333334444444556778999999999997544333333222 3445777653 233455554443
No 371
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.82 E-value=0.24 Score=49.25 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=24.2
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
....+++||||+|+|....+.. +.+.++.-+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~na-LLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNA-MLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHH-HHHHHhCCCCCEEEEEEe
Confidence 4567899999999876644433 334444444445444444
No 372
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.18 Score=47.41 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
.++++.|+||+|||.+.
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 46999999999999863
No 373
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.79 E-value=0.12 Score=43.33 Aligned_cols=145 Identities=17% Similarity=0.095 Sum_probs=74.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH-HHHHHHHHhhcCCCcEEEEEEcCCCh
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI-QISEQFEALGSGISLRCAVLVGGVDM 122 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~-q~~~~~~~~~~~~~~~~~~~~g~~~~ 122 (437)
....+.+..++|.|||.+++-.++..+. .+.+|+++-=.+--.. --...++++. ++.... .+...
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g---------~G~~V~ivQFlKg~~~~GE~~~l~~l~---~v~~~~--~g~~~ 86 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG---------HGKKVGVVQFIKGAWSTGERNLLEFGG---GVEFHV--MGTGF 86 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH---------CCCeEEEEEEecCCCccCHHHHHhcCC---CcEEEE--CCCCC
Confidence 4568999999999999987776666665 5666776632221100 0011222211 222221 11110
Q ss_pred HHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccH--HHHHHHHHhCCccceEEEEeecCch
Q 013727 123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE--KSLDEILNVIPRMRQTYLFSATMTK 200 (437)
Q Consensus 123 ~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~ 200 (437)
.-. .....--.......+..... .+.-..+++||+||+-..++.++. ..+..++...|...-+|+..-.+|+
T Consensus 87 ~~~----~~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 87 TWE----TQDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred ccc----CCCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 000 00000000001111221111 123456899999999987776653 4566677777766656665556677
Q ss_pred HHHHHHHH
Q 013727 201 KVKKLQRA 208 (437)
Q Consensus 201 ~~~~~~~~ 208 (437)
++...++.
T Consensus 161 ~Lie~ADl 168 (191)
T PRK05986 161 ELIEAADL 168 (191)
T ss_pred HHHHhCch
Confidence 66665554
No 374
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.77 E-value=0.18 Score=51.41 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=76.3
Q ss_pred EEccCCChHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHh-cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEE
Q 013727 233 RFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRN-LGQRAIPISGHMSQSKRLGALNKFKAGECNILIC 309 (437)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~ 309 (437)
.-++...|.+....++... .+..+||.++.+.....+.+.++. .|.++.++|+++++.+|.....+..+|+.+|+|.
T Consensus 223 ~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIG 302 (730)
T COG1198 223 DGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIG 302 (730)
T ss_pred eCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEE
Confidence 4455666777777777654 677899999999988888777764 4789999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCEEEEe
Q 013727 310 TDVASRGLDIPSVDMVINY 328 (437)
Q Consensus 310 T~~~~~Gid~~~~~~Vi~~ 328 (437)
|-.+ --.-++++..||..
T Consensus 303 tRSA-lF~Pf~~LGLIIvD 320 (730)
T COG1198 303 TRSA-LFLPFKNLGLIIVD 320 (730)
T ss_pred echh-hcCchhhccEEEEe
Confidence 9742 23567777877753
No 375
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.73 E-value=0.11 Score=53.76 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcC-----CceEe-ccCCCCHHHHHHHHHHhhCCCceEEEEcCCC
Q 013727 242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG-----QRAIP-ISGHMSQSKRLGALNKFKAGECNILICTDVA 313 (437)
Q Consensus 242 ~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 313 (437)
..+..+.....+.++++.++|...+.++++.|++.. ..+.. +|+.++..+++.++++|.+|+.+|||+|+.+
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 334444455567889999999999888888887653 33323 8999999999999999999999999999853
No 376
>PF05729 NACHT: NACHT domain
Probab=94.72 E-value=0.27 Score=40.38 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 013727 47 DLIGLAQTGSGKTGAF 62 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~ 62 (437)
-++|.|++|+|||...
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4789999999999753
No 377
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.15 Score=50.47 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=24.2
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
....+++||||+|++....+. .+...++.-+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a~n-aLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFN-ALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHHHH-HHHHHHhcCCCCceEEEEE
Confidence 456789999999987654333 3445555544444444433
No 378
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.69 E-value=0.056 Score=52.95 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=24.9
Q ss_pred HHhCCCCCChHHHHHHHHhhhcCC--cEEEEcCCCchHHHH
Q 013727 23 CENVGWKTPSKIQAEAIPHALEGK--DLIGLAQTGSGKTGA 61 (437)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~~~~~~--~~lv~~~tGsGKT~~ 61 (437)
|..+|| .+.|.+.+..+.... -+++.||||||||.+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 445554 455666666665543 378999999999985
No 379
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.69 E-value=0.13 Score=52.31 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~ 63 (437)
.+|+.||.|+|||.++-
T Consensus 42 AYLF~GP~GtGKTt~Ar 58 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAK 58 (725)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46899999999998654
No 380
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.69 E-value=0.24 Score=43.34 Aligned_cols=52 Identities=23% Similarity=0.162 Sum_probs=34.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
|..+++.|++|+|||...+-.+...+. .+..++|+... +-..++.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~---------~g~~~~y~s~e-~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLK---------NGEKAMYISLE-EREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---------CCCeEEEEECC-CCHHHHHHHHHHcC
Confidence 467899999999999754333333332 45567777554 45677888877765
No 381
>PRK13764 ATPase; Provisional
Probab=94.69 E-value=0.082 Score=52.71 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=18.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQAL 70 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l 70 (437)
+++++++||||||||.. +..++..+
T Consensus 257 ~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 257 AEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 57899999999999974 34444444
No 382
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.69 E-value=0.22 Score=46.97 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=24.8
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeec
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
.....+|||||+|.|.... ...+.+.++.-+....++++|..
T Consensus 139 ~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECC
Confidence 4567899999999775433 33444555554444444444433
No 383
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.68 E-value=0.22 Score=49.46 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=70.6
Q ss_pred HHHHHHHhc-CCCcEEEEecchH----HHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-CCCCC
Q 013727 243 YLVYILTEV-SASSTMVFTRTCD----ATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRG 316 (437)
Q Consensus 243 ~~~~~l~~~-~~~~~iVf~~s~~----~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~G 316 (437)
.+..++... .+.++.+-++|-- +...+.++|...|+.+..+.|.+....|..++....+|+++++|.|- .+...
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Confidence 333344333 5677888899954 44566777778899999999999999999999999999999999998 45888
Q ss_pred CCCCCCCEEEEecC
Q 013727 317 LDIPSVDMVINYDI 330 (437)
Q Consensus 317 id~~~~~~Vi~~~~ 330 (437)
+++.++-.||.-..
T Consensus 380 V~F~~LgLVIiDEQ 393 (677)
T COG1200 380 VEFHNLGLVIIDEQ 393 (677)
T ss_pred eeecceeEEEEecc
Confidence 99999988886443
No 384
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.67 E-value=0.25 Score=47.05 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=26.6
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCchH
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK 201 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 201 (437)
....+++||||+|+|..... ..+.+.++.-+... ++++++|-+..
T Consensus 115 ~~~~kViiIDead~m~~~aa-naLLk~LEep~~~~-~fIL~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERAA-NALLKAVEEPPPRT-VWLLCAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHHHH-HHHHHHhhcCCCCC-eEEEEECChHH
Confidence 35678999999998865433 33444455444444 45555554433
No 385
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.65 E-value=0.16 Score=47.13 Aligned_cols=34 Identities=18% Similarity=0.013 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhhhcC-----CcEEEEcCCCchHHHHHHH
Q 013727 31 PSKIQAEAIPHALEG-----KDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~~-----~~~lv~~~tGsGKT~~~~~ 64 (437)
++|||...+..+... +..++.||.|.||+..+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~ 40 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH 40 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH
Confidence 368888888887752 4578999999999986543
No 386
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.64 E-value=0.22 Score=48.46 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=33.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
|.-+++.|++|+|||...+ -+...+.. .+.+++|+... +-..|+...+.+++
T Consensus 94 GsvilI~G~pGsGKTTL~l-q~a~~~a~--------~g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLL-QVACQLAK--------NQMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred CeEEEEEcCCCCCHHHHHH-HHHHHHHh--------cCCcEEEEECc-CCHHHHHHHHHHcC
Confidence 3568999999999997543 33333332 33468888764 44577777666654
No 387
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.62 E-value=0.74 Score=46.56 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=23.1
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeec
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
+...++|||||+|.|....+. .+...++.-+... ++++.++
T Consensus 118 ~~~~kVvIIDEa~~L~~~a~n-aLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAAFN-ALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHHHH-HHHHHHhcCCCCe-EEEEEeC
Confidence 456789999999977553332 2333344433333 4444444
No 388
>PRK06620 hypothetical protein; Validated
Probab=94.62 E-value=0.094 Score=45.39 Aligned_cols=16 Identities=31% Similarity=0.177 Sum_probs=14.0
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
..++++||+|+|||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999974
No 389
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.57 E-value=0.12 Score=54.56 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=65.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHh----cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-CCCCCCCCCCCCEEE
Q 013727 252 SASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMVI 326 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~Gid~~~~~~Vi 326 (437)
.+.+++|.++|...|.+.++.++. .++.+..+++..+..++..++..+.+|+.+|+|+|. .+...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 457899999999999998887765 356788899999999999999999999999999997 555668888888887
Q ss_pred Eec
Q 013727 327 NYD 329 (437)
Q Consensus 327 ~~~ 329 (437)
.-.
T Consensus 579 IDE 581 (926)
T TIGR00580 579 IDE 581 (926)
T ss_pred eec
Confidence 644
No 390
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.55 E-value=0.24 Score=50.11 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~ 63 (437)
+.+|+.||.|+|||.++.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~ 56 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSAR 56 (620)
T ss_pred ceEEEECCCCCChHHHHH
Confidence 467999999999998644
No 391
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.50 E-value=0.083 Score=48.65 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=25.1
Q ss_pred ChHHHHHHHHhhhc----C---CcEEEEcCCCchHHHHHHH
Q 013727 31 PSKIQAEAIPHALE----G---KDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~----~---~~~lv~~~tGsGKT~~~~~ 64 (437)
..|||...+..+.. + +-.++.||.|.||+..+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~ 43 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA 43 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH
Confidence 46788877777663 3 3577999999999986543
No 392
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.49 E-value=0.088 Score=49.96 Aligned_cols=69 Identities=20% Similarity=0.013 Sum_probs=48.8
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
.+-..|.++.-....|+- .+.|=.|||||...++-+.+.-... +..++++.+=|+.|+.++.+...+|+
T Consensus 162 nfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~kn-------Pd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 162 NFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKN-------PDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCC-------CCceEEEEeehHHHHHHHHHHHHHHH
Confidence 345567777666666655 6788899999986443332221111 67789999999999999998887775
No 393
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.14 Score=51.17 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=34.5
Q ss_pred cEEE-ECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCC
Q 013727 134 HIVV-ATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186 (437)
Q Consensus 134 ~iiv-~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~ 186 (437)
.-.| +=||++.+.+...+.. --++.+||.|.|..+..++--.++++.+-
T Consensus 397 RTYIGamPGrIiQ~mkka~~~----NPv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVK----NPVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred ccccccCChHHHHHHHHhCCc----CCeEEeechhhccCCCCCChHHHHHhhcC
Confidence 3444 4499999888764421 12589999999988777777777777664
No 394
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.45 E-value=0.023 Score=56.69 Aligned_cols=54 Identities=30% Similarity=0.490 Sum_probs=47.4
Q ss_pred HHHhhCCCceEEEEcCCCCCCCCCCCCCEE--------EEecCCCChhhHHHHhhhcccCCC
Q 013727 296 LNKFKAGECNILICTDVASRGLDIPSVDMV--------INYDIPTNSKDYIHRVGRTARAGR 349 (437)
Q Consensus 296 ~~~f~~g~~~ilv~T~~~~~Gid~~~~~~V--------i~~~~p~s~~~~~Q~~GR~~R~g~ 349 (437)
-++|.+|+..|-|-..+++.||.++.-+.| |-+.+|||.+.-+|..||+.|..+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 468999999999999999999999865544 458899999999999999999875
No 395
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.032 Score=49.94 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=34.8
Q ss_pred cCccccCCCHHHHHHHHhC--CCCC--------ChHHHHHHH-H-----hhhcCCcEEEEcCCCchHHHHHHHHHHHHHH
Q 013727 8 KTFKELGLRDELVEACENV--GWKT--------PSKIQAEAI-P-----HALEGKDLIGLAQTGSGKTGAFALPILQALL 71 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~--g~~~--------~~~~Q~~~~-~-----~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~ 71 (437)
.+.++++-|.++..-|... |-.. .+.+=.+.- . .-++..++++.||||||||+.+. .++.++
T Consensus 44 ~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAq--TLAk~L 121 (408)
T COG1219 44 KELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQ--TLAKIL 121 (408)
T ss_pred hhhccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHH--HHHHHh
Confidence 3566778888888777654 3211 011111111 0 11234689999999999998543 344443
No 396
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.082 Score=55.26 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=37.2
Q ss_pred cccCccccCCCHHHHHHHHhCCCCC-ChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 6 EVKTFKELGLRDELVEACENVGWKT-PSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~-~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
...+|+..|....++..|+.+-+.. ++|-+.+-+. +.--+-++..+|+|+|||+.
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~-itpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN-ITPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc-cCCCcceeecCCCCCchhHH
Confidence 3457999999999999999875532 2222222111 12235699999999999985
No 397
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.37 E-value=0.67 Score=42.91 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=23.1
Q ss_pred CccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 157 ~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
..++|++||+|.+... ....+..+++..+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4678999999977543 2334555555555555454433
No 398
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.35 E-value=0.087 Score=48.31 Aligned_cols=43 Identities=21% Similarity=0.108 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 96 (437)
|+-+.+.||+|||||...+..+..... .+..++|+-.-..+-.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~---------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK---------AGGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEEcccchhHH
Confidence 357889999999999765443333322 4556777755444433
No 399
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.35 E-value=0.038 Score=48.06 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=12.9
Q ss_pred EEEEcCCCchHHHH
Q 013727 48 LIGLAQTGSGKTGA 61 (437)
Q Consensus 48 ~lv~~~tGsGKT~~ 61 (437)
+++.|+|||||+.+
T Consensus 130 viiVGaTGSGKSTt 143 (375)
T COG5008 130 VIIVGATGSGKSTT 143 (375)
T ss_pred EEEECCCCCCchhh
Confidence 78899999999986
No 400
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.35 E-value=0.41 Score=51.48 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=33.5
Q ss_pred ccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 158 LKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 158 ~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
--+||||++|.+.+......+..++...+....+|+.|-+.+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 457999999987666667788888998888888888776644
No 401
>PHA00729 NTP-binding motif containing protein
Probab=94.34 E-value=0.7 Score=40.02 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHH
Q 013727 47 DLIGLAQTGSGKTGAF 62 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~ 62 (437)
++++.|++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999753
No 402
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.34 E-value=0.18 Score=45.29 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=55.7
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCh
Q 013727 43 LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 122 (437)
..|.-+++.|.||.|||..++-.+...+.. .+..++|++.--. .+++..++-........ ..+..+.-.
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~--------~~~~vly~SlEm~-~~~l~~R~la~~s~v~~--~~i~~g~l~ 85 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALN--------GGYPVLYFSLEMS-EEELAARLLARLSGVPY--NKIRSGDLS 85 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHT--------TSSEEEEEESSS--HHHHHHHHHHHHHTSTH--HHHHCCGCH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHh--------cCCeEEEEcCCCC-HHHHHHHHHHHhhcchh--hhhhccccC
Confidence 344568999999999997655444444432 2466888866321 23344333222222111 111112111
Q ss_pred HHHHH-------HhCCCCcEEE-ECc----hHHHHHHhcCCCCCCCCccEEEEcccccccc
Q 013727 123 MQQTL-------ALGKRPHIVV-ATP----GRLMDHLTNTKGFSLGTLKYLVLDEADRLLN 171 (437)
Q Consensus 123 ~~~~~-------~~~~~~~iiv-~Tp----~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~ 171 (437)
..++. .+. ...+.+ .+| +.+...+..... ....+++||||=.|.+..
T Consensus 86 ~~e~~~~~~~~~~l~-~~~l~i~~~~~~~~~~i~~~i~~~~~-~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 86 DEEFERLQAAAEKLS-DLPLYIEDTPSLTIDDIESKIRRLKR-EGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHHHHHHHHHHHH-TSEEEEEESSS-BHHHHHHHHHHHHH-HSTTEEEEEEEEGGGSBT
T ss_pred HHHHHHHHHHHHHHh-hCcEEEECCCCCCHHHHHHHHHHHHh-hccCCCEEEechHHHhcC
Confidence 11111 122 233443 433 344444432211 125688999999997665
No 403
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.32 E-value=0.16 Score=48.46 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
+.+++.||+|+|||..
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5799999999999975
No 404
>PRK06904 replicative DNA helicase; Validated
Probab=94.28 E-value=0.68 Score=45.31 Aligned_cols=133 Identities=17% Similarity=0.067 Sum_probs=64.1
Q ss_pred CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 27 GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 27 g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
|+.+-.+---+.+.-+..|.-+++.|.||.|||... +-+...+... .+..++|++.- .-..|+..++-...
T Consensus 203 Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafa-lnia~~~a~~-------~g~~Vl~fSlE-Ms~~ql~~Rlla~~ 273 (472)
T PRK06904 203 GVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFA-MNLCENAAMA-------SEKPVLVFSLE-MPAEQIMMRMLASL 273 (472)
T ss_pred CccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHH-HHHHHHHHHh-------cCCeEEEEecc-CCHHHHHHHHHHhh
Confidence 443333333334444445567889999999999754 3333332211 34456666443 44566666554433
Q ss_pred cCCCcEEEEEEcC-CChHHHHH-------HhCCCCcEEEE-----CchHHHHHHhcCCCCCCCCccEEEEcccccccc
Q 013727 107 SGISLRCAVLVGG-VDMMQQTL-------ALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN 171 (437)
Q Consensus 107 ~~~~~~~~~~~g~-~~~~~~~~-------~~~~~~~iiv~-----Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~ 171 (437)
.. +....+..+ .-...++. .+.....+.|- |+..+......... ....+++||||=.+.+..
T Consensus 274 s~--v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 274 SR--VDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYR-ENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred CC--CCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEecHHhcCC
Confidence 22 222222222 11111111 22223445552 34444333322110 123588999999987653
No 405
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.27 E-value=0.05 Score=54.40 Aligned_cols=161 Identities=19% Similarity=0.187 Sum_probs=93.4
Q ss_pred CChHHHHHHHHhhhc--------CC--cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 30 TPSKIQAEAIPHALE--------GK--DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~--------~~--~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
.++..|.+++-.+.+ |. .+|+--..|.||-.+..-.|+...++ ...++|++.-+..|--...
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk--------GRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK--------GRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc--------ccceeEEEEeccccccchh
Confidence 367888888876654 22 35665556666655433334554443 5678999999999988888
Q ss_pred HHHHHhhcCCCcEEEEEEcCCChHHH-HHHhCCCCcEEEECchHHHHHHhcCCC-C--C---------CCCccEEEEccc
Q 013727 100 EQFEALGSGISLRCAVLVGGVDMMQQ-TLALGKRPHIVVATPGRLMDHLTNTKG-F--S---------LGTLKYLVLDEA 166 (437)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~iiv~Tp~~l~~~l~~~~~-~--~---------~~~~~~vViDE~ 166 (437)
+.++..+.. ++.|+.+..-....-. ...-.....|+++|+..|..--..... . . -.-=++||+|||
T Consensus 336 RDL~DigA~-~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDEC 414 (1300)
T KOG1513|consen 336 RDLRDIGAT-GIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDEC 414 (1300)
T ss_pred hchhhcCCC-CccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhh
Confidence 888877643 4666554321110000 000111346999999776442221000 0 0 011358999999
Q ss_pred ccccc---------cccHHHHHHHHHhCCccceEEEEeecCch
Q 013727 167 DRLLN---------DDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (437)
Q Consensus 167 h~~~~---------~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 200 (437)
|+.-+ ...+..+..+...+|..+ ++.-|||-..
T Consensus 415 HkAKNL~p~~~~k~TKtG~tVLdLQk~LP~AR-VVYASATGAs 456 (1300)
T KOG1513|consen 415 HKAKNLVPTAGAKSTKTGKTVLDLQKKLPNAR-VVYASATGAS 456 (1300)
T ss_pred hhhcccccccCCCcCcccHhHHHHHHhCCCce-EEEeeccCCC
Confidence 96433 123455666667776554 8899999543
No 406
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.25 E-value=0.026 Score=61.53 Aligned_cols=102 Identities=25% Similarity=0.484 Sum_probs=79.6
Q ss_pred HHHhcCCCcEEEEecchHHHHHHHHHHHhcCC-ceEeccCCCC-----------HHHHHHHHHHhhCCCceEEEEcCCCC
Q 013727 247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQ-RAIPISGHMS-----------QSKRLGALNKFKAGECNILICTDVAS 314 (437)
Q Consensus 247 ~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~ilv~T~~~~ 314 (437)
.+.+...-..++|++.+..+....+.++.... .+..+.|.+. ...+..++..|....+++|++|.++.
T Consensus 286 ~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~ 365 (1606)
T KOG0701|consen 286 YLEKIETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLE 365 (1606)
T ss_pred HHHhhhhhhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHH
Confidence 33344446689999999999888888876422 2222333321 12356789999999999999999999
Q ss_pred CCCCCCCCCEEEEecCCCChhhHHHHhhhcccCC
Q 013727 315 RGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG 348 (437)
Q Consensus 315 ~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g 348 (437)
+|+|++.++.|+.++.|.....|+|..||+-+..
T Consensus 366 e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 366 EGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhcchhhhhhheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999999999999996653
No 407
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.23 E-value=0.11 Score=48.58 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..++++||||||||+.
T Consensus 122 ~g~ili~G~tGSGKTT~ 138 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT 138 (343)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46789999999999975
No 408
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.19 E-value=0.1 Score=46.79 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=25.5
Q ss_pred HHHhCCCCCChHHHHHHHHhhhc-C-CcEEEEcCCCchHHHH
Q 013727 22 ACENVGWKTPSKIQAEAIPHALE-G-KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 22 ~l~~~g~~~~~~~Q~~~~~~~~~-~-~~~lv~~~tGsGKT~~ 61 (437)
.|..+|+ .+.|.+.+..++. . ..+++.|+||||||..
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT 96 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH
Confidence 3556664 4456666665554 2 3589999999999975
No 409
>PHA00350 putative assembly protein
Probab=94.18 E-value=0.35 Score=45.72 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=14.1
Q ss_pred EEEEcCCCchHHHHHHH
Q 013727 48 LIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 48 ~lv~~~tGsGKT~~~~~ 64 (437)
.++.|.+|||||+.++-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 57899999999987553
No 410
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.13 E-value=0.076 Score=46.74 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=12.2
Q ss_pred EEEEcCCCchHHHH
Q 013727 48 LIGLAQTGSGKTGA 61 (437)
Q Consensus 48 ~lv~~~tGsGKT~~ 61 (437)
++|.|++|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
No 411
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.12 E-value=1.5 Score=40.58 Aligned_cols=46 Identities=26% Similarity=0.379 Sum_probs=27.6
Q ss_pred CCccEEEEcccccccc-cccHHHHHHHHHhC------CccceEEEEeecCchH
Q 013727 156 GTLKYLVLDEADRLLN-DDFEKSLDEILNVI------PRMRQTYLFSATMTKK 201 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~-~~~~~~~~~i~~~~------~~~~~~i~~SAT~~~~ 201 (437)
.++++||+|=+-++.. ......+..+...+ .+...++.++||....
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~ 247 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN 247 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH
Confidence 4588999998876543 33334455554432 2333468888886543
No 412
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.09 E-value=0.031 Score=46.72 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHHhCCCCcEEEECchHHHHHHhcCCCC-CCCCccEEEEcccccccc
Q 013727 126 TLALGKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLN 171 (437)
Q Consensus 126 ~~~~~~~~~iiv~Tp~~l~~~l~~~~~~-~~~~~~~vViDE~h~~~~ 171 (437)
.......++|||++...|++........ ....-.+|||||||.+.+
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3444557999999999887644322211 123456899999998755
No 413
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.08 E-value=0.14 Score=46.83 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=27.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 103 (437)
.+.+++||+|+|||..+ +++....+ ....+.+=+.-|.+-++.+...|+
T Consensus 163 pSmIlWGppG~GKTtlA------rlia~tsk---~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLA------RLIASTSK---KHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CceEEecCCCCchHHHH------HHHHhhcC---CCceEEEEEeccccchHHHHHHHH
Confidence 47899999999999742 22221100 033445555555555555444444
No 414
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.07 E-value=0.46 Score=40.17 Aligned_cols=41 Identities=12% Similarity=0.256 Sum_probs=23.2
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeec
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
.....+||+||+|.+..... ..+...++..++.. .+++.++
T Consensus 94 ~~~~kviiide~~~l~~~~~-~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAA-NALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHHH-HHHHHHhcCCCCCe-EEEEEEC
Confidence 45678999999998755332 23344444433333 3444443
No 415
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.06 E-value=0.25 Score=46.23 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=25.0
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
.....+|||||+|.|..... ..+-+.++.-+....++++|
T Consensus 139 ~g~~rVviIDeAd~l~~~aa-naLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAA-NAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 45678999999998755433 33555556544444445554
No 416
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.04 E-value=0.39 Score=47.56 Aligned_cols=54 Identities=31% Similarity=0.314 Sum_probs=31.5
Q ss_pred ccccCccccCCCHHHHHHHHhC-C-CCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 5 KEVKTFKELGLRDELVEACENV-G-WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~-g-~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+|+++.-.+++.+.+... . +..+..++..- ....+.+++.||+|+|||..
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHH
Confidence 4455788887766665555432 1 22222222211 11235799999999999975
No 417
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.95 E-value=0.08 Score=49.18 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhhhc----C---CcEEEEcCCCchHHHHHHH
Q 013727 31 PSKIQAEAIPHALE----G---KDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~----~---~~~lv~~~tGsGKT~~~~~ 64 (437)
++|||...|..+.. + +-.++.||.|+||+..+..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~ 43 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH
Confidence 56888888888763 3 3578999999999986543
No 418
>PRK13695 putative NTPase; Provisional
Probab=93.94 E-value=0.74 Score=38.36 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~ 63 (437)
.+++.|++|+|||+...
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 419
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.93 E-value=0.56 Score=46.07 Aligned_cols=41 Identities=27% Similarity=0.450 Sum_probs=22.7
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeec
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
.....++|+||+|.+....+. .+...++..+... ++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~n-aLLk~LEepp~~~-v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFN-ALLKTLEEPPPRT-IFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHH-HHHHHHhcCCCCe-EEEEEEC
Confidence 456789999999977544332 2333334333333 4444444
No 420
>PRK09354 recA recombinase A; Provisional
Probab=93.88 E-value=0.31 Score=45.25 Aligned_cols=51 Identities=24% Similarity=0.118 Sum_probs=33.6
Q ss_pred HHHHhhhc------CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 013727 37 EAIPHALE------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (437)
Q Consensus 37 ~~~~~~~~------~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 96 (437)
..++.++. |+-+.+.||+|||||...+..+..... .+..++|+-.--.+-.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~---------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK---------AGGTAAFIDAEHALDP 102 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEECCccchHH
Confidence 34555555 356889999999999865544444332 4566888876655543
No 421
>PRK04328 hypothetical protein; Provisional
Probab=93.82 E-value=0.14 Score=45.57 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=35.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
.|..+++.|++|+|||...+-.+...+. .+..++|+. +.+-..++.+.++.++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~---------~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---------MGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh---------cCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 3567899999999999754433333332 444566665 44556667777777654
No 422
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.81 E-value=0.1 Score=41.94 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=56.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (437)
..+++.|++|+|||.. +.-+...+.... -.-.=+++|- .+.-+...+..+..+..|....-
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~g-------~kvgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~l- 66 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREKG-------YKVGGFITPE----------VREGGKRIGFKIVDLATGEEGIL- 66 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhcC-------ceeeeEEeee----------eecCCeEeeeEEEEccCCceEEE-
Confidence 4689999999999974 444555554321 1112244552 22333344566655553322100
Q ss_pred HHHhCCCCcEEEECchHHHHHHhcCC--C--CCCCCccEEEEcccccccc--cccHHHHHHHHHh
Q 013727 126 TLALGKRPHIVVATPGRLMDHLTNTK--G--FSLGTLKYLVLDEADRLLN--DDFEKSLDEILNV 184 (437)
Q Consensus 126 ~~~~~~~~~iiv~Tp~~l~~~l~~~~--~--~~~~~~~~vViDE~h~~~~--~~~~~~~~~i~~~ 184 (437)
+.......-|+-++-..+.+.+-. . -.+..-++||+||.--|-- ..|...+..++..
T Consensus 67 --a~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 67 --ARVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred --EEcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 000001122222222222221100 0 0234468999999996533 4566667766653
No 423
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.77 E-value=0.26 Score=49.37 Aligned_cols=41 Identities=24% Similarity=0.218 Sum_probs=26.9
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
+++-+++|+||+---+|......+...+....+.+-++..|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 45667899999988778766666666666554444444433
No 424
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.72 E-value=0.13 Score=43.56 Aligned_cols=37 Identities=35% Similarity=0.258 Sum_probs=27.9
Q ss_pred HHhCCCCCChHHHHHHHHhhhc-CCcEEEEcCCCchHHHH
Q 013727 23 CENVGWKTPSKIQAEAIPHALE-GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~ 61 (437)
|-+.|+ +++.|.+.+..... +..+++.||||||||..
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 345554 56677777776654 67899999999999975
No 425
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.67 E-value=0.46 Score=49.58 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=28.1
Q ss_pred cCccccCCCHHHHHHHHhC---CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 8 KTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
.+|++++-.+...+.++.+ .+..|..++.. .+..++.+++.||+|+|||..
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~---gi~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHL---GIEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc---CCCCCceEEEECCCCCChHHH
Confidence 3566666555555444432 22222222111 112347799999999999974
No 426
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.66 E-value=0.25 Score=46.67 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
+.+++.||+|+|||...
T Consensus 37 ~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA 53 (355)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999753
No 427
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.61 E-value=0.11 Score=47.04 Aligned_cols=52 Identities=25% Similarity=0.253 Sum_probs=31.8
Q ss_pred HHHHHHHHhh-hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC-eEEEEEcCcHHH
Q 013727 33 KIQAEAIPHA-LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA-FFACVLSPTREL 94 (437)
Q Consensus 33 ~~Q~~~~~~~-~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~-~~~lvl~P~~~L 94 (437)
+...+.+... ..+.++++.|+||||||... -.++..+. .. .+++++-.+.|+
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~---------~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIP---------PEDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCH---------TTTSEEEEEESSS-S
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHH-HHHhhhcc---------ccccceEEeccccce
Confidence 3344444444 34578999999999999753 33444443 33 567777666555
No 428
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.59 E-value=0.3 Score=45.96 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~ 61 (437)
-.|+.+++.||+|+|||..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCCEEEEECCCCCChhHH
Confidence 3578999999999999974
No 429
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.57 E-value=0.42 Score=46.50 Aligned_cols=116 Identities=16% Similarity=0.037 Sum_probs=55.9
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCC
Q 013727 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 121 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~ 121 (437)
+..|.-+++.|+||+|||...+-.+...... .+..+++++.- .-..|+..++........... ...|...
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--------~g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~~~-~~~g~l~ 261 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIK--------EGKPVAFFSLE-MSAEQLAMRMLSSESRVDSQK-LRTGKLS 261 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHh--------CCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHH-hccCCCC
Confidence 3345678999999999997543333332321 34456666443 345556555554433322211 1122222
Q ss_pred hHHH------HHHhCCCCcEEE-E----CchHHHHHHhcCCCCCCCCccEEEEccccccc
Q 013727 122 MMQQ------TLALGKRPHIVV-A----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (437)
Q Consensus 122 ~~~~------~~~~~~~~~iiv-~----Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~ 170 (437)
.... ...+.. ..+.| . |++.+...+.... .-..+++||||=.+.+.
T Consensus 262 ~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~--~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 262 DEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLK--REHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcC
Confidence 2111 112222 33444 2 3334443333211 11247899999998664
No 430
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.54 E-value=0.55 Score=38.91 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=38.1
Q ss_pred CCCccEEEEcccccccccccH--HHHHHHHHhCCccceEEEEeecCchHHHHHHHHh
Q 013727 155 LGTLKYLVLDEADRLLNDDFE--KSLDEILNVIPRMRQTYLFSATMTKKVKKLQRAC 209 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 209 (437)
-..+++||+||.--.+..++. +.+..++...|.+..+|+..-..++.+-..+...
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 346999999999977776553 4566777776666666655555677776666543
No 431
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.52 E-value=1 Score=42.28 Aligned_cols=44 Identities=14% Similarity=0.079 Sum_probs=25.7
Q ss_pred CccEEEEcccccccccccHHHHHHHHHhC-CccceEEEEeecCchH
Q 013727 157 TLKYLVLDEADRLLNDDFEKSLDEILNVI-PRMRQTYLFSATMTKK 201 (437)
Q Consensus 157 ~~~~vViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~ 201 (437)
...+|.+||.| +.+-.-.-.+..++..+ ....-+|+.|-+.|.+
T Consensus 127 ~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 127 ESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred cCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 35689999999 44533344455555543 3444455556666654
No 432
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.49 E-value=3.8 Score=40.38 Aligned_cols=78 Identities=18% Similarity=0.208 Sum_probs=63.3
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-CCCCC-------CCCCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-ASRGL-------DIPSVD 323 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~~Gi-------d~~~~~ 323 (437)
.++.+||.+++++.+......|...|+.+..++++.+..++..++.....|..+++++|+- +.... ...++.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 3567999999999999999999999999999999999999999999999999999999972 22221 345677
Q ss_pred EEEEec
Q 013727 324 MVINYD 329 (437)
Q Consensus 324 ~Vi~~~ 329 (437)
.||.-.
T Consensus 130 ~iViDE 135 (470)
T TIGR00614 130 LIAVDE 135 (470)
T ss_pred EEEEeC
Confidence 766533
No 433
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.47 E-value=3.7 Score=37.57 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=68.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcC-c-HHH-HHHHHHHHHHhhcCCCcEEEEE-EcCCCh
Q 013727 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP-T-REL-AIQISEQFEALGSGISLRCAVL-VGGVDM 122 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P-~-~~L-~~q~~~~~~~~~~~~~~~~~~~-~g~~~~ 122 (437)
.+++.|..|+|||++.. -+.+++.. .+.++++.+- | |+= ++|+..+.++ .++.+..- .|+.
T Consensus 141 Vil~vGVNG~GKTTTIa-KLA~~l~~--------~g~~VllaA~DTFRAaAiEQL~~w~er----~gv~vI~~~~G~D-- 205 (340)
T COG0552 141 VILFVGVNGVGKTTTIA-KLAKYLKQ--------QGKSVLLAAGDTFRAAAIEQLEVWGER----LGVPVISGKEGAD-- 205 (340)
T ss_pred EEEEEecCCCchHhHHH-HHHHHHHH--------CCCeEEEEecchHHHHHHHHHHHHHHH----hCCeEEccCCCCC--
Confidence 36889999999998733 33333332 5555655543 3 332 2344333333 44554432 2222
Q ss_pred HHHHHHhCCCCcEEEECchHH-HHHHhcCCCCCCCCccEEEEcccccccc-cccHHHHHHHHHhCCccc------eEEEE
Q 013727 123 MQQTLALGKRPHIVVATPGRL-MDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMR------QTYLF 194 (437)
Q Consensus 123 ~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~~~~~~~~~~vViDE~h~~~~-~~~~~~~~~i~~~~~~~~------~~i~~ 194 (437)
|..+ .+.+... .-+++++|++|=|-|+-. .+.-..+++|.+.+.+.. -++.+
T Consensus 206 -----------------pAaVafDAi~~A---kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvl 265 (340)
T COG0552 206 -----------------PAAVAFDAIQAA---KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVL 265 (340)
T ss_pred -----------------cHHHHHHHHHHH---HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEE
Confidence 2211 2222221 245588899999988766 455566777766655433 23444
Q ss_pred eecCchHHHHHHHH
Q 013727 195 SATMTKKVKKLQRA 208 (437)
Q Consensus 195 SAT~~~~~~~~~~~ 208 (437)
=||...+.-.-++.
T Consensus 266 DAttGqnal~QAk~ 279 (340)
T COG0552 266 DATTGQNALSQAKI 279 (340)
T ss_pred EcccChhHHHHHHH
Confidence 78876654443443
No 434
>CHL00176 ftsH cell division protein; Validated
Probab=93.43 E-value=0.7 Score=46.95 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
+.+++.||+|+|||..
T Consensus 217 ~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 217 KGVLLVGPPGTGKTLL 232 (638)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5799999999999975
No 435
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.41 E-value=0.25 Score=43.76 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=16.8
Q ss_pred hhcCCcEEEEcCCCchHHH
Q 013727 42 ALEGKDLIGLAQTGSGKTG 60 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~ 60 (437)
+..|+.+++.||.|+|||.
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3468999999999999996
No 436
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.41 E-value=0.12 Score=51.86 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=28.1
Q ss_pred HHhCCCCCChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHH
Q 013727 23 CENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQAL 70 (437)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l 70 (437)
|..+|| .+.|.+.+..+... --++++||||||||++. ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 455664 34566666665543 35789999999999863 3344443
No 437
>PRK09087 hypothetical protein; Validated
Probab=93.40 E-value=0.27 Score=42.96 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=14.0
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
..++++||+|||||..
T Consensus 45 ~~l~l~G~~GsGKThL 60 (226)
T PRK09087 45 PVVVLAGPVGSGKTHL 60 (226)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999974
No 438
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.39 E-value=0.72 Score=45.53 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=74.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH----HhhcCCCcEEEEEEcCCC
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE----ALGSGISLRCAVLVGGVD 121 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~----~~~~~~~~~~~~~~g~~~ 121 (437)
+-.+..-|---|||. ++.|++..++..- .+.++.|++..+..++-+.+++. ++.....+ ....
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s~------~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v--i~~k---- 269 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKNI------IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT--IENK---- 269 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHhh------cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce--eeec----
Confidence 556778899999997 5788888877644 67889999999988887666554 33221111 1111
Q ss_pred hHHHHHHhCCCCcEEEECchHH----HHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCC-ccceEEEEee
Q 013727 122 MMQQTLALGKRPHIVVATPGRL----MDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSA 196 (437)
Q Consensus 122 ~~~~~~~~~~~~~iiv~Tp~~l----~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SA 196 (437)
+-.|.+.-|+.= .-...+...+.-.+++++++||||- ...+ .+..++..+. ..+.+|..|.
T Consensus 270 ----------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~F-I~~~---a~~tilgfm~q~~~KiIfISS 335 (668)
T PHA03372 270 ----------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHF-IKKD---AFNTILGFLAQNTTKIIFISS 335 (668)
T ss_pred ----------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhc-cCHH---HHHHhhhhhcccCceEEEEeC
Confidence 112333333211 0011122234567799999999993 3333 3444444432 4556777777
Q ss_pred c
Q 013727 197 T 197 (437)
Q Consensus 197 T 197 (437)
|
T Consensus 336 ~ 336 (668)
T PHA03372 336 T 336 (668)
T ss_pred C
Confidence 6
No 439
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.35 E-value=0.29 Score=53.18 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-CCCCCCCCCCCCEEE
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMVI 326 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~Gid~~~~~~Vi 326 (437)
.+.+++|.++++..|.+++..++.. ++.+..+++..+..++..++..+.+|..+|+|+|. .+...+++.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 5678999999999999988887753 45777889999999999999999999999999997 445557777888877
Q ss_pred Ee
Q 013727 327 NY 328 (437)
Q Consensus 327 ~~ 328 (437)
.-
T Consensus 728 ID 729 (1147)
T PRK10689 728 VD 729 (1147)
T ss_pred Ee
Confidence 53
No 440
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.31 E-value=0.73 Score=46.12 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~ 63 (437)
+..++.||.|+|||.++.
T Consensus 39 hayLf~Gp~G~GKTt~Ar 56 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSAR 56 (563)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999998644
No 441
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.27 E-value=0.56 Score=43.17 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=26.1
Q ss_pred CChHHHHHHHHhhhc----C---CcEEEEcCCCchHHHHHH
Q 013727 30 TPSKIQAEAIPHALE----G---KDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~----~---~~~lv~~~tGsGKT~~~~ 63 (437)
.+.|||...+..+.. + +-.++.||.|.||+..+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~ 43 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVE 43 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 467888888877763 3 358999999999997544
No 442
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.18 E-value=0.53 Score=47.70 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=25.1
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeec
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
+...+++||||+|.+.... ...+...++..+... ++++.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 5678899999999875533 233445555544444 4445554
No 443
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.15 E-value=0.63 Score=48.82 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.||+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45689999999999974
No 444
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.33 Score=42.26 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
+.++..||+|+|||+.
T Consensus 206 KGvLmYGPPGTGKTlm 221 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTLM 221 (424)
T ss_pred CceEeeCCCCCcHHHH
Confidence 6799999999999974
No 445
>PHA02535 P terminase ATPase subunit; Provisional
Probab=93.09 E-value=3 Score=41.45 Aligned_cols=87 Identities=18% Similarity=0.050 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 013727 14 GLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 93 (437)
Q Consensus 14 ~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~ 93 (437)
.++++.++.|...-...+.+||+..+..-...+.-++.-.-=.|||..|..-++..... .+...+++.|+++
T Consensus 122 ~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~--------~G~nqiflSas~~ 193 (581)
T PHA02535 122 DISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALL--------TGRNQIFLSASKA 193 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHh--------cCCceEEECCCHH
Confidence 37888888888776678999999988663333444445556689999887666655554 3446789999999
Q ss_pred HHHHHHHHHHHhhcC
Q 013727 94 LAIQISEQFEALGSG 108 (437)
Q Consensus 94 L~~q~~~~~~~~~~~ 108 (437)
.+.+..+.+..++..
T Consensus 194 QA~~f~~yi~~~a~~ 208 (581)
T PHA02535 194 QAHVFKQYIIAFARE 208 (581)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999887777777543
No 446
>PRK08840 replicative DNA helicase; Provisional
Probab=93.07 E-value=1.4 Score=43.08 Aligned_cols=69 Identities=17% Similarity=-0.022 Sum_probs=38.9
Q ss_pred CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 27 GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 27 g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
|+.+..+.--..+.-+..|.-+++.|.||.|||..++-.+...... .+..++|+..- .-.+|+..++-.
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~--------~~~~v~~fSlE-Ms~~ql~~Rlla 267 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--------QDKPVLIFSLE-MPAEQLMMRMLA 267 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--------CCCeEEEEecc-CCHHHHHHHHHH
Confidence 4444444444455555556778999999999997543323322221 34456666443 335566655443
No 447
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.03 E-value=0.13 Score=45.01 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=24.2
Q ss_pred cEEEEccccccc-c----cccHHHHHHHHHhCC-ccceEEEEeecCc
Q 013727 159 KYLVLDEADRLL-N----DDFEKSLDEILNVIP-RMRQTYLFSATMT 199 (437)
Q Consensus 159 ~~vViDE~h~~~-~----~~~~~~~~~i~~~~~-~~~~~i~~SAT~~ 199 (437)
-+||+||+|.+. . ..+...+..++.... .....++++++..
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~ 166 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSD 166 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSH
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCch
Confidence 579999999988 2 344455555555522 2233455666653
No 448
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.17 Score=46.93 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
++++..||+|+|||++
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999974
No 449
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.96 E-value=0.05 Score=51.95 Aligned_cols=48 Identities=33% Similarity=0.274 Sum_probs=37.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
++++.||||||||..+++|.+.. ....++|+=|.-++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~-----------~~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT-----------WPGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc-----------CCCCEEEEccchhHHHHHHHHHHHc
Confidence 57999999999999988876643 2345888888889988776666554
No 450
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.94 E-value=0.61 Score=41.86 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=18.2
Q ss_pred HHHHhhhc-C--CcEEEEcCCCchHHHH
Q 013727 37 EAIPHALE-G--KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 37 ~~~~~~~~-~--~~~lv~~~tGsGKT~~ 61 (437)
..++.+.. + +++++.||+|+|||..
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 33444443 2 5889999999999974
No 451
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.94 E-value=0.98 Score=46.90 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~ 62 (437)
..++++.||+|+|||..+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 358999999999999753
No 452
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.92 E-value=0.4 Score=50.04 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
+.+++.||+|+|||..
T Consensus 488 ~giLL~GppGtGKT~l 503 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLL 503 (733)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5689999999999974
No 453
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.90 E-value=0.42 Score=44.87 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|+..++.||.|+|||..
T Consensus 168 kGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred cCceEEEeCCCCCChhHH
Confidence 589999999999999963
No 454
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.87 E-value=0.082 Score=43.76 Aligned_cols=28 Identities=18% Similarity=0.482 Sum_probs=18.2
Q ss_pred CCccEEEEcccccccc--cccHHHHHHHHH
Q 013727 156 GTLKYLVLDEADRLLN--DDFEKSLDEILN 183 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~--~~~~~~~~~i~~ 183 (437)
..-+++|+||+=.|-- ..|.+.+..+++
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 4568999999986533 667777777777
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.84 E-value=0.17 Score=43.33 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=12.8
Q ss_pred EEEEcCCCchHHHH
Q 013727 48 LIGLAQTGSGKTGA 61 (437)
Q Consensus 48 ~lv~~~tGsGKT~~ 61 (437)
+++.||||||||+.
T Consensus 4 ilI~GptGSGKTTl 17 (198)
T cd01131 4 VLVTGPTGSGKSTT 17 (198)
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999985
No 456
>PF12846 AAA_10: AAA-like domain
Probab=92.84 E-value=0.19 Score=46.06 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=29.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 96 (437)
.++++.|+||||||.... .++..+.. .+..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~--------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR--------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH--------cCCCEEEEcCCchHHH
Confidence 578999999999997655 44444443 5666778766655444
No 457
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.82 E-value=0.23 Score=44.57 Aligned_cols=56 Identities=20% Similarity=0.121 Sum_probs=36.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 109 (437)
.|+.+++.|++|||||...+- .+..... .+.++++++ +.+...++.+.+..++...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~q-fl~~~~~--------~ge~vlyvs-~~e~~~~l~~~~~~~g~d~ 77 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQ-FLYEGAR--------EGEPVLYVS-TEESPEELLENARSFGWDL 77 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHH-HHHHHHh--------cCCcEEEEE-ecCCHHHHHHHHHHcCCCH
Confidence 457899999999999975333 3332222 344566655 4566777888887776543
No 458
>PRK08506 replicative DNA helicase; Provisional
Probab=92.76 E-value=0.82 Score=44.85 Aligned_cols=117 Identities=17% Similarity=0.080 Sum_probs=57.5
Q ss_pred hhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEE-EcC
Q 013727 41 HALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL-VGG 119 (437)
Q Consensus 41 ~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~g~ 119 (437)
-+..|.-+++.|.||.|||...+-.+. .+.. .+..+++++. ..-..|+..++-..... +....+ .|.
T Consensus 188 G~~~G~LivIaarpg~GKT~fal~ia~-~~~~--------~g~~V~~fSl-EMs~~ql~~Rlla~~s~--v~~~~i~~~~ 255 (472)
T PRK08506 188 GFNKGDLIIIAARPSMGKTTLCLNMAL-KALN--------QDKGVAFFSL-EMPAEQLMLRMLSAKTS--IPLQNLRTGD 255 (472)
T ss_pred CCCCCceEEEEcCCCCChHHHHHHHHH-HHHh--------cCCcEEEEeC-cCCHHHHHHHHHHHhcC--CCHHHHhcCC
Confidence 333456789999999999975443333 3332 3445666644 34456666665443222 221111 222
Q ss_pred CChHHH------HHHhCCCCcEEEE-----CchHHHHHHhcCCCCCCCCccEEEEcccccccc
Q 013727 120 VDMMQQ------TLALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN 171 (437)
Q Consensus 120 ~~~~~~------~~~~~~~~~iiv~-----Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~ 171 (437)
...... ...+. +..+.|- |+..+...+..... ....+++||||=.+.+..
T Consensus 256 l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~-~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 256 LDDDEWERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKS-QHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred CCHHHHHHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEcChhhccC
Confidence 222111 11122 2344442 33344433332110 123578999999997653
No 459
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.72 E-value=0.33 Score=39.08 Aligned_cols=41 Identities=27% Similarity=0.343 Sum_probs=27.6
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecC
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
..+.+++++||.-.-+|......+..++..+. . .++++..-
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~th~ 126 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVSHD 126 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEECC
Confidence 34467899999998888777777777766652 3 44554443
No 460
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.67 E-value=0.24 Score=50.06 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=25.6
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEE
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYL 193 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 193 (437)
+.+-.++|+|||.--+|..-...+...+..+...+.++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 444578999999988887766666666654444443433
No 461
>PRK07004 replicative DNA helicase; Provisional
Probab=92.66 E-value=0.69 Score=45.17 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=56.5
Q ss_pred HHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEE
Q 013727 37 EAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 116 (437)
Q Consensus 37 ~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 116 (437)
+.+.-+..|.-+++.|.||+|||...+-.+...... .+..+++++. ..-..|+..++-.... ++....+
T Consensus 205 ~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~--------~~~~v~~fSl-EM~~~ql~~R~la~~~--~v~~~~i 273 (460)
T PRK07004 205 RMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE--------YGLPVAVFSM-EMPGTQLAMRMLGSVG--RLDQHRM 273 (460)
T ss_pred ccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH--------cCCeEEEEeC-CCCHHHHHHHHHHhhc--CCCHHHH
Confidence 333334445678999999999997543323222222 3444666533 3334555554432211 1222212
Q ss_pred -EcCCChHHHH-------HHhCCCCcEEEE-----CchHHHHHHhcCCCCCCCCccEEEEccccccc
Q 013727 117 -VGGVDMMQQT-------LALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (437)
Q Consensus 117 -~g~~~~~~~~-------~~~~~~~~iiv~-----Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~ 170 (437)
.|.... .++ ..+. ...+.|. |+..+.....+... ....+++||||=.+.+.
T Consensus 274 ~~g~l~~-~e~~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~-~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 274 RTGRLTD-EDWPKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLAR-QCGKLGLIIIDYLQLMS 337 (460)
T ss_pred hcCCCCH-HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEChhhhcc
Confidence 222222 222 1222 3455553 33333333222110 12347899999999775
No 462
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.63 E-value=0.27 Score=45.23 Aligned_cols=59 Identities=27% Similarity=0.139 Sum_probs=36.2
Q ss_pred HhCCCCCChHHHHHHHH-hhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 013727 24 ENVGWKTPSKIQAEAIP-HALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (437)
Q Consensus 24 ~~~g~~~~~~~Q~~~~~-~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L 94 (437)
.+.|. +++.|..-+. .+..+++++++|+||||||.. +.+++..+- +..+++.+=-+.++
T Consensus 123 ~~~gt--~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip---------~~~rivtIEdt~E~ 182 (312)
T COG0630 123 IEYGT--ISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIP---------PEERIVTIEDTPEL 182 (312)
T ss_pred hhcCC--CCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCC---------chhcEEEEeccccc
Confidence 33554 5555555444 444578999999999999974 333443332 44556666555554
No 463
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=92.59 E-value=0.65 Score=40.84 Aligned_cols=97 Identities=14% Similarity=0.233 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCC----ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhh
Q 013727 268 LLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE----CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGR 343 (437)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR 343 (437)
.+...+.. ++.+.+++++.+... -.+.++. ..|+|+-+.+++|+.++++.+......+...+++.|+.-=
T Consensus 102 ~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRw 175 (239)
T PF10593_consen 102 ELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRW 175 (239)
T ss_pred HHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhc
Confidence 33444444 577778876654433 2333333 7899999999999999999999999999988899988433
Q ss_pred cc-cCCCCceEEEEEccccHHHHHHHHH
Q 013727 344 TA-RAGRTGVAISLVNQYELEWYLQIEK 370 (437)
Q Consensus 344 ~~-R~g~~g~~i~~~~~~~~~~~~~l~~ 370 (437)
.| |.|-...|-++.++.-...+..+..
T Consensus 176 FGYR~gY~dl~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 176 FGYRPGYEDLCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred ccCCcccccceEEecCHHHHHHHHHHHH
Confidence 33 4444567777776666555555543
No 464
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.48 E-value=0.62 Score=46.28 Aligned_cols=68 Identities=29% Similarity=0.499 Sum_probs=54.5
Q ss_pred EEEEecchHHHHHHHHHHHhc-----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-----CCCCC-CCCCCCCE
Q 013727 256 TMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VASRG-LDIPSVDM 324 (437)
Q Consensus 256 ~iVf~~s~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~G-id~~~~~~ 324 (437)
+||+++|++.|.++++.+... +..+..+.|+++...+...+. .| .+|+|+|+ .+.++ +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998888753 456789999998877664444 46 99999998 45666 88888888
Q ss_pred EEE
Q 013727 325 VIN 327 (437)
Q Consensus 325 Vi~ 327 (437)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 875
No 465
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.45 E-value=0.093 Score=51.64 Aligned_cols=50 Identities=28% Similarity=0.309 Sum_probs=38.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
.++++.||||||||..+++|.+-. ....++|.=|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~-----------~~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN-----------YPGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh-----------ccCCEEEEECCCcHHHHHHHHHHHCC
Confidence 479999999999999998887632 12257888888899887777776654
No 466
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=92.43 E-value=0.87 Score=37.63 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=32.6
Q ss_pred CCCCccEEEEcccccccccccH--HHHHHHHHhCCccceEEEEeecCchHHHHHHH
Q 013727 154 SLGTLKYLVLDEADRLLNDDFE--KSLDEILNVIPRMRQTYLFSATMTKKVKKLQR 207 (437)
Q Consensus 154 ~~~~~~~vViDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 207 (437)
.-..+++||+||+-..++.++. ..+..++...|...-+|+..-.+++.+...++
T Consensus 93 ~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 93 SSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp T-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred hCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 3467999999999987776653 45667777776666666665666766666554
No 467
>PRK05595 replicative DNA helicase; Provisional
Probab=92.40 E-value=0.91 Score=44.25 Aligned_cols=55 Identities=16% Similarity=0.000 Sum_probs=31.5
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
+..|.-+++.|.||.|||...+-.+...... .+..++++..- .-..|+..++-..
T Consensus 198 ~~~g~liviaarpg~GKT~~al~ia~~~a~~--------~g~~vl~fSlE-ms~~~l~~R~~a~ 252 (444)
T PRK05595 198 FQKGDMILIAARPSMGKTTFALNIAEYAALR--------EGKSVAIFSLE-MSKEQLAYKLLCS 252 (444)
T ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHHHH--------cCCcEEEEecC-CCHHHHHHHHHHH
Confidence 3345567889999999997544333322222 34556666543 3345666554433
No 468
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.37 E-value=0.24 Score=43.35 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=24.8
Q ss_pred hhcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 013727 42 ALEGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (437)
Q Consensus 42 ~~~~~-~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P 90 (437)
++... ++++.|++|||||. ++.-++..+.. .-..+++++|
T Consensus 9 l~~~~fr~viIG~sGSGKT~-li~~lL~~~~~--------~f~~I~l~t~ 49 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTT-LIKSLLYYLRH--------KFDHIFLITP 49 (241)
T ss_pred hcCCCceEEEECCCCCCHHH-HHHHHHHhhcc--------cCCEEEEEec
Confidence 34443 78999999999996 34444444332 1244566667
No 469
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.30 E-value=0.47 Score=41.49 Aligned_cols=45 Identities=18% Similarity=-0.009 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~ 92 (437)
|+-+.+.|++|+|||...+..+...+.... -......++++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~---~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGE---LGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccc---cCCCcceEEEEecCC
Confidence 567899999999999865443333222100 000125677776643
No 470
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.25 E-value=1.3 Score=43.15 Aligned_cols=90 Identities=16% Similarity=0.282 Sum_probs=64.1
Q ss_pred CCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-----CCCCC-CCCCCC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VASRG-LDIPSV 322 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~G-id~~~~ 322 (437)
+..+||.++|++.|..+.+.+... +..+..+.|+.+...+.+.++ + .++|+|+|+ .+..| +|+..+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~---~-gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE---R-GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh---c-CCcEEEeCChHHHHHHHcCCccccce
Confidence 455899999999999998888765 345778889988777655554 2 479999997 45666 888889
Q ss_pred CEEEEecC--------CCChhhHHHHhhhccc
Q 013727 323 DMVINYDI--------PTNSKDYIHRVGRTAR 346 (437)
Q Consensus 323 ~~Vi~~~~--------p~s~~~~~Q~~GR~~R 346 (437)
++++.-.. -......++.++|..|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 98885222 1233455666666655
No 471
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.25 E-value=1.5 Score=45.85 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
.++++.||+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999753
No 472
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.14 E-value=4.8 Score=41.54 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=48.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHhc-------CCceEeccCCCCHHHHHHHHHHhhC--------CCceEEEEcCCCCCCC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNL-------GQRAIPISGHMSQSKRLGALNKFKA--------GECNILICTDVASRGL 317 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~--------g~~~ilv~T~~~~~Gi 317 (437)
...+|+|+++....+.+....... +.+...+-. -+..+-..++..|.+ |..-..||-...++|+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEP-r~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEP-RSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceecc-CCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 344999999998777775554432 111111111 122233344444432 3445677888999999
Q ss_pred CCCC--CCEEEEecCCC
Q 013727 318 DIPS--VDMVINYDIPT 332 (437)
Q Consensus 318 d~~~--~~~Vi~~~~p~ 332 (437)
|+.+ .+.||..+.|.
T Consensus 640 DFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPY 656 (945)
T ss_pred CccccCCceeEEecCCC
Confidence 9986 56889988874
No 473
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.13 E-value=0.28 Score=48.34 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=38.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcC
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 108 (437)
.|+.++|.|++|+|||+..+-.+.+.+.+ .+..++|++- .+-..++.+.+..++..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~--------~ge~~lyvs~-eE~~~~l~~~~~~~G~~ 75 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH--------FDEPGVFVTF-EESPQDIIKNARSFGWD 75 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEEEE-ecCHHHHHHHHHHcCCC
Confidence 35789999999999998654444443332 2445777765 36667788888887654
No 474
>PRK08006 replicative DNA helicase; Provisional
Probab=92.11 E-value=2.3 Score=41.65 Aligned_cols=119 Identities=16% Similarity=0.055 Sum_probs=57.7
Q ss_pred HHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEE-
Q 013727 39 IPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV- 117 (437)
Q Consensus 39 ~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~- 117 (437)
+.-+..|.-+++.|.||.|||..++-.+...... .+..++|+..- .-.+|+..++-..... +....+.
T Consensus 218 ~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~--------~g~~V~~fSlE-M~~~ql~~Rlla~~~~--v~~~~i~~ 286 (471)
T PRK08006 218 TAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML--------QDKPVLIFSLE-MPGEQIMMRMLASLSR--VDQTRIRT 286 (471)
T ss_pred hcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEecc-CCHHHHHHHHHHHhcC--CCHHHhhc
Confidence 3344445668889999999997544333332222 34456666443 3345665554433222 2222222
Q ss_pred cCCChHHHHHH-------hCCCCcEEEE-----CchHHHHHHhcCCCCCCCCccEEEEccccccc
Q 013727 118 GGVDMMQQTLA-------LGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (437)
Q Consensus 118 g~~~~~~~~~~-------~~~~~~iiv~-----Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~ 170 (437)
|.... .++.. +.....+.|- |+..+......... ....+++||||=.|.+.
T Consensus 287 ~~l~~-~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 287 GQLDD-EDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFR-EHGGLSLIMIDYLQLMR 349 (471)
T ss_pred CCCCH-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHHcc
Confidence 22222 22211 2123445553 33334333322110 12358899999999764
No 475
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=92.09 E-value=0.38 Score=49.62 Aligned_cols=71 Identities=24% Similarity=0.175 Sum_probs=53.2
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
.+++-|.+++... ...++|.|..|||||.+...-+.+.+..... ....++.++=|+-.|.++..++..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v-----~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGV-----DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCc-----ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999999876 5679999999999999865555544443211 334578888888888899998888764
No 476
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=92.05 E-value=0.22 Score=47.51 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=30.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 97 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q 97 (437)
...+++++.|.||||||. ++..++..+.. .+.+++|.=|.-+....
T Consensus 13 ~e~~~~li~G~~GsGKT~-~i~~ll~~~~~--------~g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQ-AIRHLLDQIRA--------RGDRAIIYDPKGEFTER 58 (386)
T ss_dssp GGGG-EEEEE-TTSSHHH-HHHHHHHHHHH--------TT-EEEEEEETTHHHHH
T ss_pred hhhCcEEEECCCCCCHHH-HHHHHHHHHHH--------cCCEEEEEECCchHHHH
Confidence 455799999999999997 45556666554 55667777777666443
No 477
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.03 E-value=0.12 Score=51.82 Aligned_cols=50 Identities=28% Similarity=0.148 Sum_probs=40.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
.++++.||||||||..+++|.+... ...++|+=|--++....+...++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 5799999999999999999987643 2347888898899888887777654
No 478
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.00 E-value=1.1 Score=43.72 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~ 63 (437)
+..++.||+|+|||.++.
T Consensus 40 ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 357899999999998644
No 479
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=1.6 Score=39.57 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=35.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH-----------HHHHHHHHHHHHhhcCCCcEEE
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR-----------ELAIQISEQFEALGSGISLRCA 114 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~-----------~L~~q~~~~~~~~~~~~~~~~~ 114 (437)
+-+++.||+|+|||.. +-++.+.+.- .- ......-.++=..+- -|+.+++..++.+....+.-+.
T Consensus 178 RliLlhGPPGTGKTSL-CKaLaQkLSI-R~--~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSL-CKALAQKLSI-RT--NDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred eEEEEeCCCCCChhHH-HHHHHHhhee-ee--cCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 4578999999999952 2222222211 10 001122233333333 3555666666666666565555
Q ss_pred EEEcC
Q 013727 115 VLVGG 119 (437)
Q Consensus 115 ~~~g~ 119 (437)
.+...
T Consensus 254 vLIDE 258 (423)
T KOG0744|consen 254 VLIDE 258 (423)
T ss_pred EEeHH
Confidence 55544
No 480
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=91.96 E-value=0.46 Score=39.94 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=44.3
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHh
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRAC 209 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 209 (437)
+.+.+.+|+||.-.=+|-.....+..++..++.....++||.-.-++++.+|+..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheE
Confidence 4667899999998777766777788888888877778999988888888877754
No 481
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.95 E-value=2 Score=40.81 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
+.+++.||+|+|||...
T Consensus 40 ~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 40 QALLFCGPRGVGKTTCA 56 (367)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999753
No 482
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=91.95 E-value=0.5 Score=47.99 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=37.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH--HHHHHHHHHHHhhcC
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE--LAIQISEQFEALGSG 108 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~--L~~q~~~~~~~~~~~ 108 (437)
.+++|.|+||+|||..+.. ++..... .+..++++=|--. |...+...++..+..
T Consensus 177 ~H~lv~G~TGsGKT~l~~~-l~~q~i~--------~g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAEL-LITQDIR--------RGDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CcEEEECCCCCCHHHHHHH-HHHHHHH--------cCCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 6899999999999977544 4444433 4455777777643 777777777776543
No 483
>PRK14701 reverse gyrase; Provisional
Probab=91.93 E-value=0.68 Score=52.11 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=53.6
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc------CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV 312 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 312 (437)
.+.+++|.+|+++.+.++++.++.. +..+..+||+++..++..+++.+.+|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999998888863 456788999999999999999999999999999984
No 484
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.91 E-value=0.34 Score=51.34 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=74.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP 331 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p 331 (437)
...++|||+.-......+...+.-.++....-.+ .++-...+..|.+ -.-.++-+...+-|+|+-+..+|+..++-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 4478899988877777777777666665544333 2333456667766 33457778899999999999999999999
Q ss_pred CChhhHHHHhhhcccCCCCce
Q 013727 332 TNSKDYIHRVGRTARAGRTGV 352 (437)
Q Consensus 332 ~s~~~~~Q~~GR~~R~g~~g~ 352 (437)
.++.+-.|.+||+.|.|++..
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred cCchHHHhhhhhhhhcccccc
Confidence 999999999999999998643
No 485
>PRK08760 replicative DNA helicase; Provisional
Probab=91.89 E-value=0.94 Score=44.44 Aligned_cols=114 Identities=18% Similarity=0.066 Sum_probs=56.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCh
Q 013727 43 LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 122 (437)
..|.-+++.|.||.|||...+-.+...... .+..++|++. ..-..|+..++.......+. ..+..+.-.
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~--------~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~--~~i~~g~l~ 295 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIK--------SKKGVAVFSM-EMSASQLAMRLISSNGRINA--QRLRTGALE 295 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHh--------cCCceEEEec-cCCHHHHHHHHHHhhCCCcH--HHHhcCCCC
Confidence 334668889999999997544333332222 2444666644 23345666666554333222 112222211
Q ss_pred HHHHH-------HhCCCCcEEEE-----CchHHHHHHhcCCCCCCCCccEEEEccccccc
Q 013727 123 MQQTL-------ALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (437)
Q Consensus 123 ~~~~~-------~~~~~~~iiv~-----Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~ 170 (437)
..++. .+. ...+.|. |++.+...+.... .-..+++||||=.+.+.
T Consensus 296 ~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~--~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 296 DEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK--REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEecHHhcC
Confidence 11111 122 2345543 3344443333211 12347899999998764
No 486
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.89 E-value=0.24 Score=45.59 Aligned_cols=19 Identities=42% Similarity=0.410 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~ 61 (437)
..+.++++.||||||||..
T Consensus 142 ~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hCCCEEEEECCCCCCHHHH
Confidence 3568999999999999974
No 487
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.84 E-value=1.8 Score=43.19 Aligned_cols=52 Identities=19% Similarity=0.073 Sum_probs=34.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
|..+++.+++|+|||...+-.+...+. .+..++|+.-. +-..++.+.+..++
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~---------~g~~~~yis~e-~~~~~i~~~~~~~g 324 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACR---------RGERCLLFAFE-ESRAQLIRNARSWG 324 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh---------CCCcEEEEEec-CCHHHHHHHHHHcC
Confidence 467899999999999754433333322 45567777543 44677777777765
No 488
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.82 E-value=1.2 Score=41.82 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=23.2
Q ss_pred HHHHHHHHhhh---cCCcEEEEcCCCchHHHH
Q 013727 33 KIQAEAIPHAL---EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 33 ~~Q~~~~~~~~---~~~~~lv~~~tGsGKT~~ 61 (437)
+.-.++++.+. .|++.+|.||.|+|||..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTL 149 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVL 149 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHH
Confidence 44456777766 579999999999999974
No 489
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.81 E-value=6.6 Score=39.51 Aligned_cols=58 Identities=26% Similarity=0.184 Sum_probs=39.7
Q ss_pred hHHHHHHHHhhhcC-------CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 013727 32 SKIQAEAIPHALEG-------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 97 (437)
Q Consensus 32 ~~~Q~~~~~~~~~~-------~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q 97 (437)
|--|..|+-.+... ..+-+.|.-|-||+.+.-+.+..++.. .-..+.|..|+-+=..-
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~--------GysnIyvtSPspeNlkT 319 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAF--------GYSNIYVTSPSPENLKT 319 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhc--------CcceEEEcCCChHHHHH
Confidence 67788887665532 357789999999998877777766653 22346677888654433
No 490
>PRK05748 replicative DNA helicase; Provisional
Probab=91.78 E-value=2 Score=42.04 Aligned_cols=68 Identities=16% Similarity=-0.009 Sum_probs=36.0
Q ss_pred CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 013727 27 GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (437)
Q Consensus 27 g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 103 (437)
|+.+..+.--+.+.-+..|.-++|.|+||.|||...+ -++..+... .+..+++++. ..-..|+..++-
T Consensus 185 gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al-~ia~~~a~~-------~g~~v~~fSl-Ems~~~l~~R~l 252 (448)
T PRK05748 185 GIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFAL-NIAQNVATK-------TDKNVAIFSL-EMGAESLVMRML 252 (448)
T ss_pred CccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHH-HHHHHHHHh-------CCCeEEEEeC-CCCHHHHHHHHH
Confidence 3433333333333333445678999999999997544 333333211 3445666543 344556665553
No 491
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=1.9 Score=40.52 Aligned_cols=60 Identities=23% Similarity=0.239 Sum_probs=42.4
Q ss_pred HHHHHhhhcC-----CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 36 AEAIPHALEG-----KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 36 ~~~~~~~~~~-----~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
..-++.++.| .-+++-+.+|.|||+. ++-+...+.. .+ ++||++-- +-..|+.-++.+++
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTL-LLQva~~lA~--------~~-~vLYVsGE-ES~~QiklRA~RL~ 143 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTL-LLQVAARLAK--------RG-KVLYVSGE-ESLQQIKLRADRLG 143 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHH-HHHHHHHHHh--------cC-cEEEEeCC-cCHHHHHHHHHHhC
Confidence 3445556654 5689999999999964 5555555553 33 78888764 55788998888875
No 492
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=91.75 E-value=5.9 Score=40.33 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=55.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 311 (437)
.++.++|.++++..+......|+..|+.+..+|++++..++..++.....|..++++.|+
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 356789999999999988889999999999999999999999999999999999999986
No 493
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=1.5 Score=38.55 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=30.6
Q ss_pred cccccCccccCCCHHHHHHHHhC-CCCCChHHHHHHHHhhh-cCCcEEEEcCCCchHHHH
Q 013727 4 EKEVKTFKELGLRDELVEACENV-GWKTPSKIQAEAIPHAL-EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~-g~~~~~~~Q~~~~~~~~-~~~~~lv~~~tGsGKT~~ 61 (437)
++|--+|+..|=-.+-++.|+.. -..-+.| ..-+..-. --+.+++.+|+|+|||++
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~p--erfv~lgidppkgvllygppgtgktl~ 227 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHP--ERFVNLGIDPPKGVLLYGPPGTGKTLC 227 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCH--HHHhhcCCCCCCceEEeCCCCCchhHH
Confidence 44455666666445545444432 2211222 22222212 236799999999999986
No 494
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.73 E-value=2.4 Score=39.16 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=30.1
Q ss_pred CchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEee
Q 013727 139 TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSA 196 (437)
Q Consensus 139 Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 196 (437)
....+.+.+...+ .....+++|||++|.|.... ...+.+.++.-| ...++++|.
T Consensus 108 ~ir~i~~~l~~~p--~~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 108 QIREIKRFLSRPP--LEAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred HHHHHHHHHccCc--ccCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 3334444454433 24678999999999875533 333444555545 444444443
No 495
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.71 E-value=0.22 Score=44.66 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=21.2
Q ss_pred HHHHHhhhcCCcEEEEcCCCchHHHHH
Q 013727 36 AEAIPHALEGKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 36 ~~~~~~~~~~~~~lv~~~tGsGKT~~~ 62 (437)
++++..+..+.++++.||+|+|||..+
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 344455567899999999999999864
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.58 E-value=0.17 Score=33.78 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
|...++.+++|||||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45699999999999974
No 497
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.57 E-value=0.99 Score=37.43 Aligned_cols=46 Identities=7% Similarity=0.043 Sum_probs=27.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+++.|++|||||..+...+. . .+..++++......-.++.+++..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~-~-----------~~~~~~~iat~~~~~~e~~~ri~~ 48 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA-Q-----------SGLQVLYIATAQPFDDEMAARIAH 48 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH-H-----------cCCCcEeCcCCCCChHHHHHHHHH
Confidence 579999999999975332211 1 122356666655555555555544
No 498
>PRK05636 replicative DNA helicase; Provisional
Probab=91.47 E-value=1.4 Score=43.62 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~ 63 (437)
.|.-+++.|.||.|||...+
T Consensus 264 ~G~Liiiaarpg~GKT~~al 283 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLAL 283 (505)
T ss_pred CCceEEEEeCCCCCHHHHHH
Confidence 34567889999999997544
No 499
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.46 E-value=0.79 Score=37.97 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=30.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 48 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 48 ~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
++|.|++|||||..+.-.+ .. .+.+++|+.....+-..+.+.+...
T Consensus 2 ~li~G~~~sGKS~~a~~~~----~~--------~~~~~~y~at~~~~d~em~~rI~~H 47 (169)
T cd00544 2 ILVTGGARSGKSRFAERLA----AE--------LGGPVTYIATAEAFDDEMAERIARH 47 (169)
T ss_pred EEEECCCCCCHHHHHHHHH----Hh--------cCCCeEEEEccCcCCHHHHHHHHHH
Confidence 5889999999997533222 11 2346788877777666666665543
No 500
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=91.38 E-value=0.2 Score=48.18 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=34.0
Q ss_pred HHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 013727 39 IPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 97 (437)
Q Consensus 39 ~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q 97 (437)
++.-...+++++.|+||||||.. +..++..+.. .+.+++|+=|..++...
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~--------~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA--------RGDRAIIYDPNGGFVSK 85 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh--------cCCCEEEEeCCcchhHh
Confidence 33344458999999999999975 4444444443 45568888888776543
Done!