Query 013727
Match_columns 437
No_of_seqs 242 out of 2739
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 15:59:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.3E-65 1.1E-69 492.4 42.8 375 4-381 52-429 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 6.2E-62 2.1E-66 468.4 37.9 372 5-383 34-406 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 2.4E-61 8.3E-66 465.4 40.4 377 3-380 10-403 (417)
4 1s2m_A Putative ATP-dependent 100.0 7.2E-60 2.5E-64 452.6 42.6 370 6-383 19-388 (400)
5 3eiq_A Eukaryotic initiation f 100.0 1.8E-60 6.3E-65 458.9 35.9 375 5-386 37-413 (414)
6 1xti_A Probable ATP-dependent 100.0 1.9E-58 6.4E-63 441.5 40.4 368 8-382 8-380 (391)
7 3fht_A ATP-dependent RNA helic 100.0 1.7E-58 5.8E-63 444.9 38.5 372 5-385 22-405 (412)
8 1hv8_A Putative ATP-dependent 100.0 2.7E-57 9.3E-62 429.7 40.2 361 6-380 4-365 (367)
9 1fuu_A Yeast initiation factor 100.0 5.5E-60 1.9E-64 452.6 21.3 373 4-384 17-390 (394)
10 3pey_A ATP-dependent RNA helic 100.0 1.8E-57 6.2E-62 435.2 38.7 367 6-383 3-381 (395)
11 3fmp_B ATP-dependent RNA helic 100.0 2.9E-59 1E-63 458.0 18.7 369 6-383 90-470 (479)
12 3sqw_A ATP-dependent RNA helic 100.0 1.3E-56 4.5E-61 448.2 37.2 372 6-379 15-417 (579)
13 3i5x_A ATP-dependent RNA helic 100.0 6.4E-56 2.2E-60 443.2 36.9 370 8-379 68-468 (563)
14 2z0m_A 337AA long hypothetical 100.0 1.6E-54 5.6E-59 405.8 36.7 336 15-374 1-336 (337)
15 3fho_A ATP-dependent RNA helic 100.0 3.3E-55 1.1E-59 430.4 19.5 369 6-385 117-496 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 1.1E-52 3.9E-57 416.0 33.9 339 9-366 22-380 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 3.6E-52 1.2E-56 408.7 35.0 338 8-368 2-351 (523)
18 3oiy_A Reverse gyrase helicase 100.0 1.9E-52 6.4E-57 402.5 26.7 351 18-398 9-403 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 7.7E-48 2.6E-52 394.4 35.4 336 4-361 4-409 (715)
20 2zj8_A DNA helicase, putative 100.0 2.7E-48 9.4E-53 397.5 30.6 351 8-381 1-406 (720)
21 2ykg_A Probable ATP-dependent 100.0 6.6E-49 2.3E-53 402.3 22.0 356 20-381 3-541 (696)
22 4ddu_A Reverse gyrase; topoiso 100.0 6.4E-48 2.2E-52 404.8 28.4 349 21-397 69-529 (1104)
23 2p6r_A Afuhel308 helicase; pro 100.0 7.1E-48 2.4E-52 393.3 26.8 332 8-361 1-389 (702)
24 3l9o_A ATP-dependent RNA helic 100.0 1.1E-47 3.7E-52 403.2 26.1 330 8-360 162-597 (1108)
25 4a2p_A RIG-I, retinoic acid in 100.0 3E-47 1E-51 380.6 27.6 331 26-364 3-512 (556)
26 3tbk_A RIG-I helicase domain; 100.0 4.8E-47 1.6E-51 379.1 24.6 331 30-368 4-515 (555)
27 1gku_B Reverse gyrase, TOP-RG; 100.0 3.1E-47 1E-51 400.1 24.0 336 9-374 31-468 (1054)
28 4a2q_A RIG-I, retinoic acid in 100.0 3.1E-46 1.1E-50 385.8 29.4 331 25-363 243-752 (797)
29 1tf5_A Preprotein translocase 100.0 4E-46 1.4E-50 369.1 28.9 322 25-362 79-547 (844)
30 2xgj_A ATP-dependent RNA helic 100.0 4.5E-45 1.5E-49 380.3 36.3 321 23-367 80-507 (1010)
31 1wp9_A ATP-dependent RNA helic 100.0 1.8E-44 6.3E-49 354.7 32.3 322 30-363 9-478 (494)
32 4a2w_A RIG-I, retinoic acid in 100.0 4.6E-45 1.6E-49 380.7 27.1 332 26-363 244-752 (936)
33 2fsf_A Preprotein translocase 100.0 1.1E-44 3.7E-49 357.8 24.8 322 25-362 70-585 (853)
34 4gl2_A Interferon-induced heli 100.0 4.5E-45 1.5E-49 374.1 20.0 315 30-348 7-509 (699)
35 4a4z_A Antiviral helicase SKI2 100.0 1.3E-43 4.3E-48 369.5 30.8 309 25-357 35-489 (997)
36 1gm5_A RECG; helicase, replica 100.0 3.1E-44 1.1E-48 362.8 23.7 326 17-368 356-705 (780)
37 1nkt_A Preprotein translocase 100.0 7.5E-44 2.6E-48 352.2 23.5 323 25-363 107-620 (922)
38 4f92_B U5 small nuclear ribonu 100.0 8.8E-43 3E-47 378.0 33.7 349 7-368 900-1316(1724)
39 2eyq_A TRCF, transcription-rep 100.0 2.8E-42 9.6E-47 364.4 33.9 323 12-360 585-922 (1151)
40 2oca_A DAR protein, ATP-depend 100.0 1.4E-43 4.7E-48 349.8 15.7 309 30-358 113-453 (510)
41 2whx_A Serine protease/ntpase/ 100.0 9.5E-44 3.3E-48 353.2 11.4 317 10-372 151-493 (618)
42 4f92_B U5 small nuclear ribonu 100.0 4.7E-42 1.6E-46 372.3 24.9 336 27-368 76-481 (1724)
43 2jlq_A Serine protease subunit 100.0 2.7E-42 9.2E-47 333.3 16.4 287 27-359 1-310 (451)
44 3o8b_A HCV NS3 protease/helica 100.0 1.5E-42 5.2E-47 341.0 14.8 302 30-387 217-545 (666)
45 2fwr_A DNA repair protein RAD2 100.0 1.1E-41 3.9E-46 332.8 16.6 292 30-360 93-454 (472)
46 2xau_A PRE-mRNA-splicing facto 100.0 1.3E-40 4.5E-45 338.7 24.2 336 4-362 68-445 (773)
47 2wv9_A Flavivirin protease NS2 100.0 1.4E-41 4.9E-46 339.5 13.1 305 22-372 202-548 (673)
48 1yks_A Genome polyprotein [con 100.0 8.8E-41 3E-45 321.2 15.5 278 41-372 4-314 (440)
49 2z83_A Helicase/nucleoside tri 100.0 1.6E-39 5.5E-44 314.3 17.1 273 39-360 15-313 (459)
50 3fe2_A Probable ATP-dependent 100.0 2.8E-38 9.5E-43 280.7 22.0 216 3-220 24-239 (242)
51 3ber_A Probable ATP-dependent 100.0 4.4E-38 1.5E-42 279.9 22.9 209 4-218 39-247 (249)
52 2v6i_A RNA helicase; membrane, 100.0 3.5E-38 1.2E-42 302.5 22.0 269 44-357 1-288 (431)
53 3dmq_A RNA polymerase-associat 100.0 2.5E-38 8.6E-43 330.3 21.5 332 30-372 153-625 (968)
54 3h1t_A Type I site-specific re 100.0 4E-38 1.4E-42 315.7 21.8 304 30-349 178-545 (590)
55 3iuy_A Probable ATP-dependent 100.0 1.3E-37 4.5E-42 274.0 20.8 213 3-217 14-227 (228)
56 1vec_A ATP-dependent RNA helic 100.0 9.8E-37 3.4E-41 264.2 24.2 202 8-216 3-205 (206)
57 3bor_A Human initiation factor 100.0 3.5E-37 1.2E-41 272.6 21.0 209 4-219 26-235 (237)
58 2pl3_A Probable ATP-dependent 100.0 1.2E-36 4.2E-41 269.3 24.4 214 4-220 21-234 (236)
59 1q0u_A Bstdead; DEAD protein, 100.0 2.9E-37 9.9E-42 270.0 20.0 209 6-221 2-214 (219)
60 3rc3_A ATP-dependent RNA helic 100.0 3.1E-37 1.1E-41 307.2 22.6 292 40-377 150-461 (677)
61 1wrb_A DJVLGB; RNA helicase, D 100.0 4.2E-37 1.4E-41 275.2 20.8 226 4-230 19-251 (253)
62 3fmo_B ATP-dependent RNA helic 100.0 3.9E-37 1.3E-41 280.9 20.7 205 6-219 90-298 (300)
63 2oxc_A Probable ATP-dependent 100.0 1.5E-36 5.2E-41 267.3 22.3 206 5-218 21-228 (230)
64 1qde_A EIF4A, translation init 100.0 2.1E-36 7.3E-41 265.7 21.7 209 4-220 10-218 (224)
65 3ly5_A ATP-dependent RNA helic 100.0 2.8E-36 9.6E-41 270.4 22.0 206 7-214 51-258 (262)
66 2gxq_A Heat resistant RNA depe 100.0 1.3E-35 4.3E-40 257.5 21.2 205 8-218 1-205 (207)
67 3jux_A Protein translocase sub 100.0 1.6E-33 5.4E-38 272.9 36.7 319 25-362 71-589 (822)
68 1z63_A Helicase of the SNF2/RA 100.0 3.3E-35 1.1E-39 289.2 25.5 309 30-360 37-453 (500)
69 1t6n_A Probable ATP-dependent 100.0 2.1E-35 7.3E-40 258.5 20.7 206 5-217 11-219 (220)
70 3dkp_A Probable ATP-dependent 100.0 2.1E-35 7.3E-40 262.9 17.9 214 3-221 20-243 (245)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.4E-34 8.1E-39 298.0 22.0 310 30-358 271-707 (1038)
72 3mwy_W Chromo domain-containin 100.0 1E-32 3.4E-37 284.2 26.1 316 30-360 236-684 (800)
73 1z3i_X Similar to RAD54-like; 100.0 3.2E-31 1.1E-35 266.4 34.6 321 30-360 55-528 (644)
74 2ipc_A Preprotein translocase 100.0 3.9E-29 1.3E-33 246.7 34.1 132 25-170 75-215 (997)
75 1c4o_A DNA nucleotide excision 100.0 1.6E-28 5.3E-33 246.6 29.0 117 252-369 438-559 (664)
76 2hjv_A ATP-dependent RNA helic 100.0 4.6E-29 1.6E-33 206.8 19.4 157 224-380 6-162 (163)
77 2d7d_A Uvrabc system protein B 100.0 2.3E-27 7.8E-32 238.0 29.4 173 187-368 385-564 (661)
78 1t5i_A C_terminal domain of A 100.0 1.6E-28 5.4E-33 205.2 17.5 157 226-382 4-161 (172)
79 1fuk_A Eukaryotic initiation f 100.0 1.9E-28 6.3E-33 203.7 17.3 157 227-383 3-160 (165)
80 2rb4_A ATP-dependent RNA helic 100.0 1.5E-28 5.1E-33 206.4 16.6 160 224-383 4-170 (175)
81 2p6n_A ATP-dependent RNA helic 100.0 1.6E-28 5.6E-33 208.2 16.3 172 208-380 10-182 (191)
82 3eaq_A Heat resistant RNA depe 100.0 1.4E-27 4.6E-32 206.5 21.4 158 228-385 6-163 (212)
83 2jgn_A DBX, DDX3, ATP-dependen 100.0 4.7E-28 1.6E-32 204.6 16.0 159 223-381 15-174 (185)
84 3i32_A Heat resistant RNA depe 99.9 1.1E-26 3.7E-31 210.0 21.0 156 228-383 3-158 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 3.4E-28 1.2E-32 203.1 0.0 155 227-381 3-158 (170)
86 3b6e_A Interferon-induced heli 99.9 2.2E-25 7.6E-30 194.2 12.4 168 26-197 29-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 6.2E-24 2.1E-28 209.1 20.8 102 252-359 383-520 (540)
88 3crv_A XPD/RAD3 related DNA he 99.9 1.9E-22 6.5E-27 199.3 29.1 309 27-359 1-530 (551)
89 1rif_A DAR protein, DNA helica 99.9 5.3E-24 1.8E-28 193.1 10.3 156 30-204 113-268 (282)
90 3llm_A ATP-dependent RNA helic 99.9 7E-23 2.4E-27 180.3 15.8 176 23-214 54-232 (235)
91 4a15_A XPD helicase, ATP-depen 99.8 3.1E-20 1E-24 184.8 20.1 313 30-359 3-583 (620)
92 2fz4_A DNA repair protein RAD2 99.8 1.7E-20 5.7E-25 164.8 14.8 138 30-201 93-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 3E-19 1E-23 159.4 12.2 125 236-360 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 99.0 8.1E-10 2.8E-14 109.9 8.8 158 19-197 137-298 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.5 4E-07 1.4E-11 89.6 11.3 125 30-195 189-313 (574)
96 2gk6_A Regulator of nonsense t 98.5 6.5E-07 2.2E-11 89.5 12.8 70 28-105 178-247 (624)
97 2xzl_A ATP-dependent helicase 98.5 1.1E-06 3.8E-11 89.8 14.2 71 28-106 358-428 (802)
98 3upu_A ATP-dependent DNA helic 98.5 7.6E-07 2.6E-11 85.7 11.9 72 23-102 18-94 (459)
99 2wjy_A Regulator of nonsense t 98.4 1.6E-06 5.4E-11 88.6 12.6 69 29-105 355-423 (800)
100 4b3f_X DNA-binding protein smu 98.4 3.9E-07 1.3E-11 91.7 8.0 68 30-106 189-257 (646)
101 3lfu_A DNA helicase II; SF1 he 98.4 2E-05 6.9E-10 79.5 20.3 71 29-106 8-78 (647)
102 2o0j_A Terminase, DNA packagin 97.8 0.00013 4.4E-09 67.6 10.7 71 30-107 163-233 (385)
103 3cpe_A Terminase, DNA packagin 97.7 0.00047 1.6E-08 68.4 14.2 147 30-200 163-315 (592)
104 3hgt_A HDA1 complex subunit 3; 97.7 0.00054 1.8E-08 61.2 12.9 123 236-363 106-240 (328)
105 3vkw_A Replicase large subunit 97.5 0.00034 1.1E-08 65.6 9.5 108 46-197 162-269 (446)
106 3ec2_A DNA replication protein 97.5 0.00057 1.9E-08 56.4 9.8 30 32-61 16-54 (180)
107 2b8t_A Thymidine kinase; deoxy 97.4 0.00037 1.3E-08 59.4 7.5 90 45-169 12-101 (223)
108 2orw_A Thymidine kinase; TMTK, 97.4 0.00022 7.6E-09 59.1 5.7 40 44-92 2-41 (184)
109 1xx6_A Thymidine kinase; NESG, 97.3 0.00058 2E-08 56.8 7.1 40 44-92 7-46 (191)
110 1uaa_A REP helicase, protein ( 97.2 0.00058 2E-08 69.0 7.6 81 30-117 2-85 (673)
111 2j9r_A Thymidine kinase; TK1, 97.1 0.0018 6.1E-08 54.4 8.0 40 45-93 28-67 (214)
112 3te6_A Regulatory protein SIR3 97.0 0.0091 3.1E-07 53.7 13.1 17 45-61 45-61 (318)
113 1pjr_A PCRA; DNA repair, DNA r 96.9 0.0016 5.5E-08 66.2 7.9 81 29-116 10-92 (724)
114 2kjq_A DNAA-related protein; s 96.9 0.00081 2.8E-08 53.5 4.1 18 44-61 35-52 (149)
115 1l8q_A Chromosomal replication 96.8 0.005 1.7E-07 56.0 9.6 17 45-61 37-53 (324)
116 3e2i_A Thymidine kinase; Zn-bi 96.8 0.0019 6.6E-08 54.0 6.1 98 45-182 28-125 (219)
117 3kl4_A SRP54, signal recogniti 96.7 0.016 5.3E-07 54.6 12.5 55 155-209 177-234 (433)
118 1w4r_A Thymidine kinase; type 96.7 0.0036 1.2E-07 51.6 7.0 38 45-91 20-57 (195)
119 2zpa_A Uncharacterized protein 96.7 0.0052 1.8E-07 60.7 9.3 113 30-199 175-289 (671)
120 3u61_B DNA polymerase accessor 96.7 0.014 4.9E-07 52.9 11.5 42 156-198 104-145 (324)
121 1d2n_A N-ethylmaleimide-sensit 96.6 0.0092 3.1E-07 52.7 9.7 17 46-62 65-81 (272)
122 2chg_A Replication factor C sm 96.6 0.033 1.1E-06 47.0 12.8 39 156-195 101-139 (226)
123 3u4q_A ATP-dependent helicase/ 96.5 0.0043 1.5E-07 67.0 7.6 74 26-105 7-80 (1232)
124 2orv_A Thymidine kinase; TP4A 96.5 0.0036 1.2E-07 53.0 5.5 40 44-92 18-57 (234)
125 3h4m_A Proteasome-activating n 96.4 0.019 6.7E-07 50.9 10.6 55 5-61 11-67 (285)
126 2z4s_A Chromosomal replication 96.3 0.021 7.3E-07 54.2 10.7 18 45-62 130-147 (440)
127 3dm5_A SRP54, signal recogniti 96.2 0.052 1.8E-06 51.0 12.4 130 47-209 102-235 (443)
128 1a5t_A Delta prime, HOLB; zinc 96.2 0.0085 2.9E-07 54.7 7.0 33 31-63 3-42 (334)
129 2w58_A DNAI, primosome compone 96.1 0.026 8.8E-07 47.2 8.9 17 46-62 55-71 (202)
130 3bos_A Putative DNA replicatio 96.1 0.015 5.2E-07 50.0 7.6 18 44-61 51-68 (242)
131 2qby_B CDC6 homolog 3, cell di 96.1 0.023 7.8E-07 52.9 9.4 17 46-62 46-62 (384)
132 2v1u_A Cell division control p 96.0 0.039 1.3E-06 51.2 10.8 17 45-61 44-60 (387)
133 3co5_A Putative two-component 96.0 0.022 7.5E-07 44.7 7.5 20 42-61 24-43 (143)
134 2p65_A Hypothetical protein PF 95.8 0.041 1.4E-06 44.9 9.0 17 45-61 43-59 (187)
135 2qby_A CDC6 homolog 1, cell di 95.8 0.056 1.9E-06 50.1 10.8 17 45-61 45-61 (386)
136 3syl_A Protein CBBX; photosynt 95.7 0.021 7.2E-07 51.4 7.1 17 46-62 68-84 (309)
137 3eie_A Vacuolar protein sortin 95.7 0.01 3.6E-07 53.8 5.0 52 4-61 11-67 (322)
138 2dr3_A UPF0273 protein PH0284; 95.6 0.037 1.3E-06 47.8 8.2 52 44-105 22-73 (247)
139 1jbk_A CLPB protein; beta barr 95.6 0.36 1.2E-05 39.2 13.9 16 46-61 44-59 (195)
140 1sxj_D Activator 1 41 kDa subu 95.5 0.11 3.9E-06 47.4 11.7 39 156-195 132-170 (353)
141 1sxj_E Activator 1 40 kDa subu 95.5 0.14 4.8E-06 46.9 12.2 41 156-197 133-173 (354)
142 1gm5_A RECG; helicase, replica 95.5 0.037 1.3E-06 56.3 8.7 80 252-331 416-500 (780)
143 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.014 4.8E-07 53.0 5.0 54 4-61 5-61 (322)
144 4b4t_J 26S protease regulatory 95.4 0.18 6.2E-06 46.7 12.4 54 5-61 142-198 (405)
145 1fnn_A CDC6P, cell division co 95.2 0.039 1.3E-06 51.3 7.2 15 47-61 46-60 (389)
146 1g5t_A COB(I)alamin adenosyltr 95.1 0.044 1.5E-06 45.2 6.4 137 46-207 29-172 (196)
147 1iqp_A RFCS; clamp loader, ext 95.0 0.17 5.7E-06 45.7 11.0 42 156-199 109-150 (327)
148 2qp9_X Vacuolar protein sortin 94.8 0.019 6.7E-07 52.8 4.0 16 46-61 85-100 (355)
149 1njg_A DNA polymerase III subu 94.7 0.37 1.2E-05 40.9 11.7 15 47-61 47-61 (250)
150 2r6a_A DNAB helicase, replicat 94.7 0.12 4.2E-06 49.2 9.3 52 42-102 200-251 (454)
151 2w0m_A SSO2452; RECA, SSPF, un 94.6 0.14 4.6E-06 43.6 8.7 19 44-62 22-40 (235)
152 1jr3_A DNA polymerase III subu 94.4 0.43 1.5E-05 43.9 12.2 41 155-197 117-157 (373)
153 3vfd_A Spastin; ATPase, microt 94.4 0.2 6.9E-06 46.6 9.9 17 45-61 148-164 (389)
154 3pfi_A Holliday junction ATP-d 94.3 0.098 3.4E-06 47.6 7.4 16 46-61 56-71 (338)
155 3hu3_A Transitional endoplasmi 94.3 0.067 2.3E-06 51.4 6.5 17 45-61 238-254 (489)
156 2q6t_A DNAB replication FORK h 94.3 0.11 3.7E-06 49.4 7.9 50 44-102 199-248 (444)
157 2zan_A Vacuolar protein sortin 94.2 0.064 2.2E-06 51.0 6.2 17 45-61 167-183 (444)
158 3oiy_A Reverse gyrase helicase 94.2 0.18 6.3E-06 47.2 9.3 80 251-330 62-148 (414)
159 3hjh_A Transcription-repair-co 94.2 0.26 9E-06 47.0 10.3 52 44-107 13-64 (483)
160 3pvs_A Replication-associated 94.1 0.12 4.1E-06 49.0 7.8 16 46-61 51-66 (447)
161 1sxj_B Activator 1 37 kDa subu 93.6 0.31 1.1E-05 43.7 9.5 38 157-195 107-144 (323)
162 1n0w_A DNA repair protein RAD5 93.5 0.23 8E-06 42.5 8.1 20 44-63 23-42 (243)
163 1sxj_A Activator 1 95 kDa subu 93.5 0.31 1.1E-05 47.2 9.8 41 156-198 147-189 (516)
164 3cmu_A Protein RECA, recombina 93.4 0.14 4.9E-06 56.9 7.8 46 39-93 1415-1466(2050)
165 2gno_A DNA polymerase III, gam 93.4 0.26 8.9E-06 44.1 8.3 42 155-198 80-121 (305)
166 2zr9_A Protein RECA, recombina 93.3 0.073 2.5E-06 48.7 4.6 45 38-91 48-98 (349)
167 1sxj_C Activator 1 40 kDa subu 93.0 0.44 1.5E-05 43.3 9.4 38 156-194 109-146 (340)
168 2l8b_A Protein TRAI, DNA helic 93.0 0.19 6.3E-06 40.7 5.9 59 31-97 35-95 (189)
169 2ehv_A Hypothetical protein PH 92.9 0.049 1.7E-06 47.1 2.8 44 156-199 134-182 (251)
170 1hqc_A RUVB; extended AAA-ATPa 92.9 0.14 4.6E-06 46.3 5.8 17 45-61 38-54 (324)
171 3n70_A Transport activator; si 92.9 0.079 2.7E-06 41.5 3.7 19 43-61 22-40 (145)
172 2chq_A Replication factor C sm 92.8 0.19 6.6E-06 45.0 6.7 15 47-61 40-54 (319)
173 1ls1_A Signal recognition part 92.8 1.5 5.3E-05 38.8 12.5 19 45-63 98-116 (295)
174 3m6a_A ATP-dependent protease 92.8 0.2 6.9E-06 48.9 7.2 17 45-61 108-124 (543)
175 1xp8_A RECA protein, recombina 92.8 0.14 4.7E-06 47.1 5.6 46 38-92 61-112 (366)
176 1w5s_A Origin recognition comp 92.7 1.3 4.4E-05 41.2 12.6 16 46-61 51-68 (412)
177 1fuk_A Eukaryotic initiation f 92.7 1.2 4.2E-05 35.4 10.8 75 81-166 29-107 (165)
178 3eaq_A Heat resistant RNA depe 92.6 1.2 4.3E-05 37.1 11.1 72 81-163 30-105 (212)
179 3hr8_A Protein RECA; alpha and 92.5 0.11 3.7E-06 47.6 4.5 48 37-93 47-100 (356)
180 2hjv_A ATP-dependent RNA helic 92.4 3.3 0.00011 32.7 14.8 75 81-166 34-112 (163)
181 2fna_A Conserved hypothetical 92.4 4.4 0.00015 36.5 15.5 39 158-198 138-179 (357)
182 4a1f_A DNAB helicase, replicat 92.3 0.12 4.2E-06 46.8 4.6 55 39-103 40-94 (338)
183 2rb4_A ATP-dependent RNA helic 92.3 0.96 3.3E-05 36.4 9.7 73 81-164 33-109 (175)
184 4b4t_M 26S protease regulatory 92.3 0.074 2.5E-06 50.0 3.1 56 3-61 173-231 (434)
185 1t6n_A Probable ATP-dependent 92.0 0.61 2.1E-05 39.1 8.5 74 253-329 82-166 (220)
186 2p6n_A ATP-dependent RNA helic 91.9 1.1 3.9E-05 36.7 9.7 73 82-165 54-130 (191)
187 2v1x_A ATP-dependent DNA helic 91.8 0.73 2.5E-05 45.4 9.9 60 252-311 83-144 (591)
188 2eyq_A TRCF, transcription-rep 91.7 0.67 2.3E-05 49.6 10.1 79 251-329 650-733 (1151)
189 1t5i_A C_terminal domain of A 91.6 1.3 4.6E-05 35.5 9.7 76 81-167 30-109 (172)
190 4ddu_A Reverse gyrase; topoiso 91.5 0.32 1.1E-05 51.7 7.3 79 251-330 119-205 (1104)
191 3io5_A Recombination and repai 91.1 0.33 1.1E-05 43.3 5.8 91 47-170 30-124 (333)
192 3ber_A Probable ATP-dependent 91.1 1.9 6.4E-05 37.1 10.7 73 252-328 110-193 (249)
193 1oyw_A RECQ helicase, ATP-depe 90.7 0.85 2.9E-05 44.2 9.0 59 253-311 65-123 (523)
194 3cf2_A TER ATPase, transitiona 90.6 0.33 1.1E-05 49.4 6.0 53 6-61 472-527 (806)
195 2qgz_A Helicase loader, putati 90.5 0.41 1.4E-05 42.8 6.1 19 45-63 152-170 (308)
196 2eyu_A Twitching motility prot 90.2 0.23 7.9E-06 43.3 4.0 20 42-61 22-41 (261)
197 3fe2_A Probable ATP-dependent 90.0 1.1 3.9E-05 38.2 8.4 73 252-328 101-183 (242)
198 4b4t_H 26S protease regulatory 90.0 0.18 6.1E-06 47.5 3.3 55 4-61 202-259 (467)
199 1p9r_A General secretion pathw 90.0 0.21 7E-06 46.9 3.7 27 35-61 155-183 (418)
200 3e70_C DPA, signal recognition 90.0 2.7 9.1E-05 37.8 11.0 52 158-209 212-264 (328)
201 1tue_A Replication protein E1; 90.0 0.44 1.5E-05 39.5 5.3 46 15-62 26-75 (212)
202 3cf2_A TER ATPase, transitiona 90.0 0.45 1.5E-05 48.4 6.4 16 46-61 239-254 (806)
203 2oap_1 GSPE-2, type II secreti 89.8 0.32 1.1E-05 46.9 5.0 40 20-61 236-276 (511)
204 4b4t_L 26S protease subunit RP 89.7 0.22 7.4E-06 46.9 3.6 54 5-61 175-231 (437)
205 3cf0_A Transitional endoplasmi 89.5 0.18 6.2E-06 45.0 2.9 56 5-61 9-65 (301)
206 1e9r_A Conjugal transfer prote 89.5 0.39 1.3E-05 45.4 5.3 44 44-96 52-95 (437)
207 3jvv_A Twitching mobility prot 89.3 0.81 2.8E-05 41.8 7.1 18 44-61 122-139 (356)
208 3i5x_A ATP-dependent RNA helic 89.3 3 0.0001 40.6 11.8 78 81-166 338-419 (563)
209 3bh0_A DNAB-like replicative h 89.2 1.7 5.6E-05 39.0 9.0 54 42-105 65-118 (315)
210 1qvr_A CLPB protein; coiled co 89.0 0.7 2.4E-05 47.9 7.2 16 46-61 192-207 (854)
211 3pxi_A Negative regulator of g 88.9 1.3 4.4E-05 45.2 9.1 16 47-62 523-538 (758)
212 3b85_A Phosphate starvation-in 88.8 0.37 1.3E-05 40.3 4.1 34 28-61 5-38 (208)
213 1u0j_A DNA replication protein 88.8 0.82 2.8E-05 39.7 6.3 45 17-63 73-122 (267)
214 2zts_A Putative uncharacterize 88.2 0.28 9.7E-06 42.1 3.1 52 45-105 30-81 (251)
215 3i32_A Heat resistant RNA depe 88.1 1.4 4.8E-05 39.1 7.6 75 81-166 27-105 (300)
216 3sqw_A ATP-dependent RNA helic 87.9 5.5 0.00019 39.0 12.6 79 81-167 287-369 (579)
217 4b4t_K 26S protease regulatory 87.9 0.28 9.4E-06 46.0 3.0 54 5-61 166-222 (428)
218 3cmw_A Protein RECA, recombina 87.6 0.64 2.2E-05 51.2 5.9 122 46-202 1432-1571(1706)
219 1vec_A ATP-dependent RNA helic 87.5 2.9 9.9E-05 34.4 9.0 72 253-328 71-153 (206)
220 2gxq_A Heat resistant RNA depe 87.5 3.4 0.00012 33.9 9.5 74 252-329 71-152 (207)
221 3hws_A ATP-dependent CLP prote 87.5 0.9 3.1E-05 41.6 6.3 18 44-61 50-67 (363)
222 1lv7_A FTSH; alpha/beta domain 87.0 0.82 2.8E-05 39.5 5.4 55 4-61 5-61 (257)
223 4b4t_I 26S protease regulatory 86.9 0.29 1E-05 45.6 2.5 55 4-61 175-232 (437)
224 2ffh_A Protein (FFH); SRP54, s 86.9 13 0.00045 34.6 13.8 18 46-63 99-116 (425)
225 2jgn_A DBX, DDX3, ATP-dependen 86.8 1.2 4.2E-05 36.3 6.1 73 81-164 45-121 (185)
226 1j8m_F SRP54, signal recogniti 86.8 5.6 0.00019 35.1 10.8 17 47-63 100-116 (297)
227 1ex7_A Guanylate kinase; subst 86.7 0.45 1.5E-05 39.0 3.3 16 46-61 2-17 (186)
228 2qz4_A Paraplegin; AAA+, SPG7, 86.5 0.43 1.5E-05 41.3 3.4 51 8-61 3-55 (262)
229 1kgd_A CASK, peripheral plasma 86.5 0.43 1.5E-05 38.8 3.1 18 44-61 4-21 (180)
230 3iuy_A Probable ATP-dependent 86.4 1.6 5.4E-05 36.8 6.9 73 252-328 93-174 (228)
231 1ixz_A ATP-dependent metallopr 86.0 0.34 1.1E-05 41.9 2.3 55 4-61 9-65 (254)
232 2r62_A Cell division protease 85.9 0.19 6.6E-06 43.9 0.7 56 3-61 3-60 (268)
233 3nbx_X ATPase RAVA; AAA+ ATPas 85.7 1 3.5E-05 43.2 5.7 31 31-61 27-57 (500)
234 3bor_A Human initiation factor 85.7 1.5 5.2E-05 37.3 6.3 74 252-328 97-180 (237)
235 2bjv_A PSP operon transcriptio 85.6 0.69 2.3E-05 40.2 4.2 18 44-61 28-45 (265)
236 2z43_A DNA repair and recombin 85.5 0.71 2.4E-05 41.6 4.3 58 45-105 107-165 (324)
237 2r44_A Uncharacterized protein 85.3 0.65 2.2E-05 41.9 4.0 26 36-61 37-62 (331)
238 4ag6_A VIRB4 ATPase, type IV s 85.2 0.65 2.2E-05 43.2 4.0 42 44-94 34-75 (392)
239 2qmh_A HPR kinase/phosphorylas 85.0 0.43 1.5E-05 39.3 2.4 17 45-61 34-50 (205)
240 1lvg_A Guanylate kinase, GMP k 85.0 0.57 1.9E-05 38.8 3.2 18 44-61 3-20 (198)
241 3bgw_A DNAB-like replicative h 85.0 2.4 8.2E-05 40.0 7.8 53 42-104 194-246 (444)
242 2x8a_A Nuclear valosin-contain 85.0 0.29 1E-05 43.0 1.4 53 6-61 5-60 (274)
243 3u4q_B ATP-dependent helicase/ 84.9 0.68 2.3E-05 49.8 4.5 40 48-93 4-43 (1166)
244 3iij_A Coilin-interacting nucl 84.9 0.57 1.9E-05 37.9 3.1 19 43-61 9-27 (180)
245 3a8t_A Adenylate isopentenyltr 84.8 0.46 1.6E-05 42.8 2.6 16 46-61 41-56 (339)
246 2oxc_A Probable ATP-dependent 84.8 2.2 7.7E-05 35.9 7.0 71 252-327 91-172 (230)
247 3tau_A Guanylate kinase, GMP k 84.8 0.58 2E-05 39.0 3.2 18 44-61 7-24 (208)
248 1um8_A ATP-dependent CLP prote 84.6 2 6.9E-05 39.5 7.1 17 45-61 72-88 (376)
249 2d7d_A Uvrabc system protein B 84.6 12 0.0004 37.4 13.0 78 81-169 444-525 (661)
250 2j37_W Signal recognition part 84.6 17 0.00059 34.7 13.6 18 47-64 103-120 (504)
251 3uk6_A RUVB-like 2; hexameric 84.5 1.2 4E-05 40.9 5.4 16 46-61 71-86 (368)
252 3vaa_A Shikimate kinase, SK; s 84.5 0.61 2.1E-05 38.5 3.2 19 44-62 24-42 (199)
253 3exa_A TRNA delta(2)-isopenten 84.5 0.49 1.7E-05 42.1 2.7 16 46-61 4-19 (322)
254 3fht_A ATP-dependent RNA helic 84.4 5.5 0.00019 36.7 10.1 74 81-165 265-342 (412)
255 2i4i_A ATP-dependent RNA helic 84.4 3.5 0.00012 38.2 8.8 72 81-163 275-350 (417)
256 2ewv_A Twitching motility prot 84.4 1 3.4E-05 41.5 4.8 19 43-61 134-152 (372)
257 2xxa_A Signal recognition part 84.3 14 0.00049 34.5 12.8 18 47-64 102-119 (433)
258 2gza_A Type IV secretion syste 84.2 0.62 2.1E-05 42.7 3.3 20 42-61 172-191 (361)
259 1iy2_A ATP-dependent metallopr 84.2 0.5 1.7E-05 41.5 2.6 53 6-61 35-89 (278)
260 1qhx_A CPT, protein (chloramph 84.1 0.51 1.7E-05 38.1 2.5 17 45-61 3-19 (178)
261 1c4o_A DNA nucleotide excision 84.0 24 0.00082 35.1 15.0 78 81-169 438-519 (664)
262 2px0_A Flagellar biosynthesis 84.0 1 3.5E-05 39.9 4.6 19 45-63 105-123 (296)
263 4akg_A Glutathione S-transfera 84.0 2 7E-05 49.7 7.9 46 17-63 892-941 (2695)
264 1xti_A Probable ATP-dependent 83.8 4.2 0.00014 37.3 9.0 73 253-328 76-159 (391)
265 1ofh_A ATP-dependent HSL prote 83.7 2.6 8.9E-05 37.3 7.3 17 45-61 50-66 (310)
266 3b9p_A CG5977-PA, isoform A; A 83.6 0.51 1.7E-05 41.9 2.4 54 5-61 15-70 (297)
267 2r8r_A Sensor protein; KDPD, P 83.5 1.2 4.2E-05 37.5 4.6 21 47-67 8-28 (228)
268 3trf_A Shikimate kinase, SK; a 83.4 0.7 2.4E-05 37.5 3.1 18 45-62 5-22 (185)
269 1u94_A RECA protein, recombina 83.3 1.1 3.7E-05 40.9 4.6 45 38-91 50-100 (356)
270 3tr0_A Guanylate kinase, GMP k 83.0 0.74 2.5E-05 38.1 3.1 18 44-61 6-23 (205)
271 3foz_A TRNA delta(2)-isopenten 82.9 0.68 2.3E-05 41.1 2.9 15 47-61 12-26 (316)
272 1wrb_A DJVLGB; RNA helicase, D 82.7 11 0.00037 32.1 10.7 72 253-328 100-181 (253)
273 1ojl_A Transcriptional regulat 82.7 0.83 2.8E-05 40.7 3.5 18 44-61 24-41 (304)
274 3lw7_A Adenylate kinase relate 82.7 0.56 1.9E-05 37.5 2.2 15 47-61 3-17 (179)
275 2qor_A Guanylate kinase; phosp 82.6 0.83 2.8E-05 37.9 3.2 20 42-61 9-28 (204)
276 3ney_A 55 kDa erythrocyte memb 82.5 0.84 2.9E-05 37.7 3.1 18 44-61 18-35 (197)
277 2ze6_A Isopentenyl transferase 82.4 0.74 2.5E-05 39.8 2.9 15 47-61 3-17 (253)
278 2cvh_A DNA repair and recombin 82.4 1.1 3.6E-05 37.5 3.9 20 44-63 19-38 (220)
279 2j41_A Guanylate kinase; GMP, 82.4 0.79 2.7E-05 37.9 3.0 19 43-61 4-22 (207)
280 1yks_A Genome polyprotein [con 82.3 1.9 6.5E-05 40.7 6.0 69 82-162 177-245 (440)
281 1s2m_A Putative ATP-dependent 82.2 9.7 0.00033 34.9 10.9 74 81-165 257-334 (400)
282 1zp6_A Hypothetical protein AT 82.2 0.63 2.2E-05 38.0 2.3 20 42-61 6-25 (191)
283 2pt7_A CAG-ALFA; ATPase, prote 82.0 0.61 2.1E-05 42.2 2.3 19 43-61 169-187 (330)
284 3nwn_A Kinesin-like protein KI 81.9 0.95 3.3E-05 41.2 3.6 25 38-62 96-122 (359)
285 1kht_A Adenylate kinase; phosp 81.7 0.69 2.4E-05 37.7 2.4 17 45-61 3-19 (192)
286 1nlf_A Regulatory protein REPA 81.5 1.8 6.3E-05 37.8 5.2 24 41-64 26-49 (279)
287 2ius_A DNA translocase FTSK; n 81.3 1.4 4.6E-05 42.4 4.5 18 45-62 167-184 (512)
288 1kag_A SKI, shikimate kinase I 81.3 1 3.6E-05 36.0 3.3 17 45-61 4-20 (173)
289 3ly5_A ATP-dependent RNA helic 81.2 5.3 0.00018 34.5 8.1 73 252-328 125-208 (262)
290 1xjc_A MOBB protein homolog; s 81.2 1.9 6.5E-05 34.5 4.7 15 47-61 6-20 (169)
291 4gp7_A Metallophosphoesterase; 81.0 0.58 2E-05 37.7 1.6 18 44-61 8-25 (171)
292 3a00_A Guanylate kinase, GMP k 81.0 1 3.6E-05 36.6 3.2 16 46-61 2-17 (186)
293 2l82_A Designed protein OR32; 80.9 7.7 0.00026 27.6 7.1 131 256-391 5-146 (162)
294 1bg2_A Kinesin; motor protein, 80.8 1.2 4E-05 40.1 3.7 24 39-62 70-95 (325)
295 2pl3_A Probable ATP-dependent 80.8 3.6 0.00012 34.8 6.7 71 252-327 96-177 (236)
296 2j0s_A ATP-dependent RNA helic 80.7 7.5 0.00026 35.9 9.5 74 81-165 275-352 (410)
297 1y63_A LMAJ004144AAA protein; 80.6 1.1 3.6E-05 36.5 3.1 18 44-61 9-26 (184)
298 1z6g_A Guanylate kinase; struc 80.5 1.1 3.9E-05 37.6 3.4 19 43-61 21-39 (218)
299 2c9o_A RUVB-like 1; hexameric 80.4 2.1 7.2E-05 40.6 5.6 18 45-62 63-80 (456)
300 1cr0_A DNA primase/helicase; R 80.4 1.6 5.5E-05 38.6 4.5 22 41-62 31-52 (296)
301 1ly1_A Polynucleotide kinase; 80.3 0.79 2.7E-05 36.9 2.2 15 47-61 4-18 (181)
302 1f9v_A Kinesin-like protein KA 80.2 1.4 4.7E-05 40.0 4.0 25 38-62 76-102 (347)
303 2i1q_A DNA repair and recombin 80.1 1.3 4.6E-05 39.7 3.9 61 46-106 99-167 (322)
304 1qde_A EIF4A, translation init 80.1 2.5 8.4E-05 35.4 5.4 73 252-329 81-163 (224)
305 3crm_A TRNA delta(2)-isopenten 79.9 0.99 3.4E-05 40.4 2.9 15 47-61 7-21 (323)
306 3t0q_A AGR253WP; kinesin, alph 79.9 1.3 4.6E-05 40.1 3.8 25 38-62 77-103 (349)
307 4dzz_A Plasmid partitioning pr 79.9 4 0.00014 33.4 6.6 31 133-167 55-85 (206)
308 1vma_A Cell division protein F 79.8 1.8 6E-05 38.6 4.5 18 46-63 105-122 (306)
309 3dc4_A Kinesin-like protein NO 79.7 1.2 4E-05 40.4 3.3 23 40-62 88-112 (344)
310 1gku_B Reverse gyrase, TOP-RG; 79.5 3.9 0.00013 43.4 7.7 75 252-328 98-182 (1054)
311 2r2a_A Uncharacterized protein 79.4 1.3 4.4E-05 36.7 3.3 16 47-62 7-22 (199)
312 2ce7_A Cell division protein F 79.4 0.82 2.8E-05 43.5 2.3 52 5-61 10-65 (476)
313 2vvg_A Kinesin-2; motor protei 79.4 1.4 4.7E-05 40.0 3.7 23 40-62 83-107 (350)
314 1v8k_A Kinesin-like protein KI 79.3 1.3 4.4E-05 41.1 3.5 24 39-62 147-172 (410)
315 1goj_A Kinesin, kinesin heavy 79.3 1.4 4.8E-05 40.1 3.7 23 40-62 74-98 (355)
316 3pey_A ATP-dependent RNA helic 79.3 36 0.0012 30.7 14.8 76 81-167 242-321 (395)
317 2yjt_D ATP-dependent RNA helic 80.5 0.39 1.3E-05 38.6 0.0 74 81-165 29-106 (170)
318 2y65_A Kinesin, kinesin heavy 79.1 1.4 4.8E-05 40.2 3.7 24 39-62 77-102 (365)
319 3cm0_A Adenylate kinase; ATP-b 79.1 0.87 3E-05 37.0 2.1 18 44-61 3-20 (186)
320 4etp_A Kinesin-like protein KA 79.0 1.4 4.8E-05 40.9 3.7 25 38-62 132-158 (403)
321 2h58_A Kinesin-like protein KI 79.0 1.4 4.9E-05 39.6 3.7 25 38-62 72-98 (330)
322 3t15_A Ribulose bisphosphate c 79.0 1 3.5E-05 39.9 2.7 16 46-61 37-52 (293)
323 3b6u_A Kinesin-like protein KI 79.0 1.4 4.7E-05 40.4 3.6 23 40-62 95-119 (372)
324 1t5c_A CENP-E protein, centrom 78.9 1.4 4.7E-05 40.0 3.6 24 39-62 70-95 (349)
325 1w36_B RECB, exodeoxyribonucle 78.9 2.6 8.8E-05 45.4 6.2 59 47-105 18-79 (1180)
326 3lre_A Kinesin-like protein KI 78.9 1.5 5E-05 40.0 3.7 23 40-62 99-123 (355)
327 3kb2_A SPBC2 prophage-derived 78.7 1.2 4.1E-05 35.5 2.8 15 47-61 3-17 (173)
328 4a14_A Kinesin, kinesin-like p 78.6 1.5 5.1E-05 39.8 3.7 24 39-62 76-101 (344)
329 3gbj_A KIF13B protein; kinesin 78.6 1.5 5E-05 40.0 3.6 25 38-62 84-110 (354)
330 3d3q_A TRNA delta(2)-isopenten 78.5 1.1 3.9E-05 40.3 2.9 16 47-62 9-24 (340)
331 2nr8_A Kinesin-like protein KI 78.5 1.5 5E-05 40.0 3.6 25 38-62 95-121 (358)
332 2zfi_A Kinesin-like protein KI 78.4 1.5 5.2E-05 40.1 3.7 24 39-62 82-107 (366)
333 1x88_A Kinesin-like protein KI 78.2 1.4 4.8E-05 40.2 3.4 25 38-62 80-106 (359)
334 1rj9_A FTSY, signal recognitio 78.2 2.2 7.4E-05 38.0 4.6 17 45-61 102-118 (304)
335 3vkg_A Dynein heavy chain, cyt 78.1 4.2 0.00014 47.9 7.7 46 17-63 875-924 (3245)
336 4eun_A Thermoresistant glucoki 78.0 1.4 4.8E-05 36.3 3.2 18 44-61 28-45 (200)
337 3fmo_B ATP-dependent RNA helic 77.9 3 0.0001 36.9 5.5 69 253-328 162-242 (300)
338 1znw_A Guanylate kinase, GMP k 77.7 1.5 5E-05 36.5 3.2 21 41-61 16-36 (207)
339 1zu4_A FTSY; GTPase, signal re 77.6 2.2 7.5E-05 38.3 4.4 18 46-63 106-123 (320)
340 2heh_A KIF2C protein; kinesin, 77.5 1.6 5.4E-05 40.2 3.5 24 39-62 127-152 (387)
341 1nij_A Hypothetical protein YJ 77.4 1.4 4.9E-05 39.5 3.2 15 47-61 6-20 (318)
342 1knq_A Gluconate kinase; ALFA/ 77.1 1.3 4.4E-05 35.5 2.6 17 45-61 8-24 (175)
343 2wbe_C Bipolar kinesin KRP-130 77.0 1.5 5.3E-05 40.1 3.3 23 40-62 94-118 (373)
344 3nwj_A ATSK2; P loop, shikimat 76.9 1.7 5.7E-05 37.5 3.3 18 44-61 47-64 (250)
345 1tf5_A Preprotein translocase 76.8 8.7 0.0003 39.0 8.9 73 249-327 120-209 (844)
346 1hv8_A Putative ATP-dependent 76.8 7 0.00024 35.2 7.9 74 81-165 237-314 (367)
347 2wv9_A Flavivirin protease NS2 76.7 4.2 0.00014 40.6 6.6 69 82-162 410-478 (673)
348 3cob_A Kinesin heavy chain-lik 76.6 1.5 5E-05 40.1 3.1 25 38-62 71-97 (369)
349 2db3_A ATP-dependent RNA helic 76.6 9 0.00031 35.8 8.7 68 85-163 303-374 (434)
350 2yvu_A Probable adenylyl-sulfa 76.5 2.8 9.4E-05 33.9 4.5 18 45-62 13-30 (186)
351 1s96_A Guanylate kinase, GMP k 76.4 1.7 5.7E-05 36.6 3.2 19 43-61 14-32 (219)
352 3umf_A Adenylate kinase; rossm 76.4 1.5 5.1E-05 36.8 2.8 18 45-62 29-46 (217)
353 3u06_A Protein claret segregat 76.3 1.9 6.4E-05 40.1 3.7 25 38-62 130-156 (412)
354 3eph_A TRNA isopentenyltransfe 76.3 1.4 4.7E-05 40.8 2.7 16 47-62 4-19 (409)
355 1zuh_A Shikimate kinase; alpha 76.2 1.6 5.5E-05 34.6 3.0 17 46-62 8-24 (168)
356 2c95_A Adenylate kinase 1; tra 76.2 1.7 5.8E-05 35.5 3.1 19 43-61 7-25 (196)
357 2rhm_A Putative kinase; P-loop 76.1 1 3.4E-05 36.8 1.7 17 45-61 5-21 (193)
358 2owm_A Nckin3-434, related to 76.0 1.9 6.5E-05 40.5 3.7 24 39-62 129-154 (443)
359 1via_A Shikimate kinase; struc 75.9 1.8 6.1E-05 34.7 3.1 17 46-62 5-21 (175)
360 2v54_A DTMP kinase, thymidylat 75.7 1.7 5.8E-05 35.8 3.0 18 44-61 3-20 (204)
361 3uie_A Adenylyl-sulfate kinase 75.7 1.5 5.1E-05 36.2 2.6 19 43-61 23-41 (200)
362 2rep_A Kinesin-like protein KI 75.6 1.9 6.4E-05 39.6 3.5 25 38-62 107-133 (376)
363 3bfn_A Kinesin-like protein KI 75.6 1.6 5.4E-05 40.2 3.0 32 31-62 75-116 (388)
364 3b9q_A Chloroplast SRP recepto 75.5 2.7 9.3E-05 37.3 4.5 17 45-61 100-116 (302)
365 2iut_A DNA translocase FTSK; n 75.4 2.5 8.5E-05 41.0 4.4 26 45-71 214-239 (574)
366 3lnc_A Guanylate kinase, GMP k 75.2 0.97 3.3E-05 38.3 1.4 20 42-61 24-43 (231)
367 3tlx_A Adenylate kinase 2; str 75.2 2.2 7.5E-05 36.5 3.7 17 45-61 29-45 (243)
368 1tev_A UMP-CMP kinase; ploop, 75.2 1.5 5.2E-05 35.7 2.6 17 46-62 4-20 (196)
369 2fsf_A Preprotein translocase 75.1 9.2 0.00032 38.8 8.5 72 250-327 112-200 (853)
370 3bs4_A Uncharacterized protein 75.1 3.8 0.00013 35.4 5.1 54 45-108 21-74 (260)
371 4f4c_A Multidrug resistance pr 75.1 3.5 0.00012 44.8 6.0 39 156-194 1234-1272(1321)
372 3d8b_A Fidgetin-like protein 1 75.0 1.6 5.4E-05 39.9 2.9 17 45-61 117-133 (357)
373 1in4_A RUVB, holliday junction 74.9 1.8 6E-05 39.2 3.1 16 46-61 52-67 (334)
374 1ye8_A Protein THEP1, hypothet 74.9 1.9 6.3E-05 34.9 3.0 15 47-61 2-16 (178)
375 3sr0_A Adenylate kinase; phosp 74.9 2.1 7.3E-05 35.5 3.4 16 47-62 2-17 (206)
376 4fcw_A Chaperone protein CLPB; 74.7 1.6 5.4E-05 38.8 2.7 17 46-62 48-64 (311)
377 2xau_A PRE-mRNA-splicing facto 74.6 18 0.0006 36.8 10.7 76 81-163 302-393 (773)
378 1wp9_A ATP-dependent RNA helic 74.6 11 0.00037 35.4 8.9 76 81-167 360-447 (494)
379 1m7g_A Adenylylsulfate kinase; 74.4 1.8 6.2E-05 36.0 2.9 29 32-61 13-41 (211)
380 3t61_A Gluconokinase; PSI-biol 74.4 1.8 6.1E-05 35.7 2.8 16 46-61 19-34 (202)
381 2bdt_A BH3686; alpha-beta prot 74.4 1.8 6.3E-05 35.1 2.9 16 46-61 3-18 (189)
382 2qt1_A Nicotinamide riboside k 74.2 1.1 3.6E-05 37.3 1.4 19 43-61 19-37 (207)
383 2iyv_A Shikimate kinase, SK; t 74.1 2.2 7.6E-05 34.4 3.3 17 46-62 3-19 (184)
384 1gvn_B Zeta; postsegregational 74.0 1.3 4.4E-05 39.1 1.9 16 46-61 34-49 (287)
385 1ry6_A Internal kinesin; kines 73.9 2.1 7.3E-05 39.0 3.3 19 44-62 82-102 (360)
386 3c8u_A Fructokinase; YP_612366 73.8 1.6 5.4E-05 36.3 2.3 18 44-61 21-38 (208)
387 2jlq_A Serine protease subunit 73.8 5.7 0.0002 37.5 6.5 69 82-162 188-256 (451)
388 1e6c_A Shikimate kinase; phosp 73.7 2.2 7.6E-05 33.9 3.2 16 46-61 3-18 (173)
389 1nkt_A Preprotein translocase 73.7 11 0.00038 38.5 8.6 73 249-327 148-237 (922)
390 1f2t_A RAD50 ABC-ATPase; DNA d 73.5 1.6 5.6E-05 34.0 2.2 15 47-61 25-39 (149)
391 1np6_A Molybdopterin-guanine d 73.5 4.1 0.00014 32.7 4.7 16 46-61 7-22 (174)
392 2plr_A DTMP kinase, probable t 73.4 1.8 6.1E-05 35.8 2.6 18 44-61 3-20 (213)
393 2i3b_A HCR-ntpase, human cance 73.3 2.4 8.2E-05 34.7 3.3 41 155-198 103-145 (189)
394 1v5w_A DMC1, meiotic recombina 73.3 3 0.0001 37.8 4.3 57 46-105 123-180 (343)
395 3fb4_A Adenylate kinase; psych 73.3 2 6.8E-05 35.8 2.9 16 47-62 2-17 (216)
396 4a74_A DNA repair and recombin 73.2 1.5 5.3E-05 36.8 2.2 18 44-61 24-41 (231)
397 1aky_A Adenylate kinase; ATP:A 73.1 2.3 7.8E-05 35.6 3.2 17 45-61 4-20 (220)
398 1zak_A Adenylate kinase; ATP:A 73.1 2.2 7.5E-05 35.8 3.1 17 45-61 5-21 (222)
399 1c9k_A COBU, adenosylcobinamid 73.1 1.8 6.3E-05 35.0 2.4 44 48-104 2-45 (180)
400 2bwj_A Adenylate kinase 5; pho 73.1 2.1 7.3E-05 34.9 3.0 18 44-61 11-28 (199)
401 1zd8_A GTP:AMP phosphotransfer 73.0 2.1 7.1E-05 36.1 3.0 17 45-61 7-23 (227)
402 2v9p_A Replication protein E1; 72.7 2.1 7.2E-05 38.0 3.0 18 44-61 125-142 (305)
403 1nks_A Adenylate kinase; therm 72.5 2.1 7E-05 34.8 2.8 15 47-61 3-17 (194)
404 3dl0_A Adenylate kinase; phosp 72.4 2.1 7.3E-05 35.6 2.9 15 47-61 2-16 (216)
405 1ak2_A Adenylate kinase isoenz 72.4 2.3 8E-05 36.0 3.1 18 45-62 16-33 (233)
406 3tif_A Uncharacterized ABC tra 72.3 1.7 5.8E-05 37.0 2.2 17 44-60 30-46 (235)
407 3gk5_A Uncharacterized rhodane 72.0 3.1 0.00011 30.3 3.3 36 252-287 54-89 (108)
408 4a2p_A RIG-I, retinoic acid in 71.9 8.4 0.00029 37.2 7.5 73 253-329 55-138 (556)
409 2og2_A Putative signal recogni 71.7 3.7 0.00013 37.4 4.4 18 45-62 157-174 (359)
410 1cke_A CK, MSSA, protein (cyti 71.7 2.3 7.9E-05 35.7 2.9 16 46-61 6-21 (227)
411 3ice_A Transcription terminati 71.6 4.9 0.00017 37.0 5.1 30 33-62 159-191 (422)
412 3asz_A Uridine kinase; cytidin 71.5 2 7E-05 35.6 2.5 17 45-61 6-22 (211)
413 2f1r_A Molybdopterin-guanine d 71.4 1.8 6E-05 34.8 2.0 15 47-61 4-18 (171)
414 3tbk_A RIG-I helicase domain; 71.3 7.2 0.00025 37.6 6.8 71 253-327 52-133 (555)
415 2ipc_A Preprotein translocase 71.3 13 0.00045 38.1 8.5 58 248-311 115-176 (997)
416 3f9v_A Minichromosome maintena 71.2 2.5 8.4E-05 41.6 3.3 15 47-61 329-343 (595)
417 1qf9_A UMP/CMP kinase, protein 71.1 2.3 7.9E-05 34.5 2.7 15 47-61 8-22 (194)
418 2v6i_A RNA helicase; membrane, 70.8 4.9 0.00017 37.7 5.2 68 82-161 171-238 (431)
419 2yhs_A FTSY, cell division pro 70.8 3.7 0.00013 39.1 4.3 16 46-61 294-309 (503)
420 3foj_A Uncharacterized protein 70.7 3.2 0.00011 29.6 3.1 36 252-287 55-90 (100)
421 4a2q_A RIG-I, retinoic acid in 70.6 11 0.00037 38.6 8.1 71 253-327 296-377 (797)
422 2pez_A Bifunctional 3'-phospho 70.6 2.4 8.2E-05 34.1 2.7 18 44-61 4-21 (179)
423 1q57_A DNA primase/helicase; d 70.5 3.6 0.00012 39.5 4.4 53 42-103 239-291 (503)
424 1ukz_A Uridylate kinase; trans 70.5 2 6.7E-05 35.4 2.2 16 46-61 16-31 (203)
425 2cbz_A Multidrug resistance-as 70.2 2 6.9E-05 36.6 2.2 18 44-61 30-47 (237)
426 3k1j_A LON protease, ATP-depen 70.2 3.7 0.00013 40.5 4.4 24 38-61 53-76 (604)
427 1g8p_A Magnesium-chelatase 38 70.2 1.2 4.3E-05 40.3 0.9 17 45-61 45-61 (350)
428 2cdn_A Adenylate kinase; phosp 70.1 2.6 9E-05 34.6 2.9 16 46-61 21-36 (201)
429 1sgw_A Putative ABC transporte 70.0 2.2 7.7E-05 35.6 2.4 32 155-186 149-180 (214)
430 1wv9_A Rhodanese homolog TT165 70.0 4.1 0.00014 28.6 3.6 35 254-288 54-88 (94)
431 2vli_A Antibiotic resistance p 69.8 1.6 5.4E-05 35.2 1.4 17 45-61 5-21 (183)
432 2jaq_A Deoxyguanosine kinase; 69.8 2.7 9.2E-05 34.4 2.9 15 47-61 2-16 (205)
433 2v3c_C SRP54, signal recogniti 69.7 2.6 8.9E-05 39.5 3.0 19 46-64 100-118 (432)
434 4f4c_A Multidrug resistance pr 69.6 2.5 8.5E-05 46.0 3.2 35 155-189 570-604 (1321)
435 3dkp_A Probable ATP-dependent 69.6 4.4 0.00015 34.4 4.3 75 252-329 97-183 (245)
436 1jjv_A Dephospho-COA kinase; P 69.5 2.7 9.3E-05 34.6 2.8 15 47-61 4-18 (206)
437 3qf7_A RAD50; ABC-ATPase, ATPa 69.4 3 0.0001 38.2 3.3 16 47-62 25-40 (365)
438 2wwf_A Thymidilate kinase, put 69.3 2.9 9.8E-05 34.6 3.0 18 44-61 9-26 (212)
439 2pt5_A Shikimate kinase, SK; a 69.3 2.9 9.9E-05 33.0 2.9 15 47-61 2-16 (168)
440 4anj_A Unconventional myosin-V 69.3 3.5 0.00012 43.2 4.1 65 7-72 97-170 (1052)
441 3be4_A Adenylate kinase; malar 69.2 2.9 0.0001 34.9 3.0 17 45-61 5-21 (217)
442 3a4m_A L-seryl-tRNA(SEC) kinas 69.1 2.2 7.5E-05 36.9 2.2 16 46-61 5-20 (260)
443 1q0u_A Bstdead; DEAD protein, 68.9 3.8 0.00013 34.1 3.7 71 253-327 72-156 (219)
444 3kta_A Chromosome segregation 68.9 3 0.0001 33.5 3.0 15 47-61 28-42 (182)
445 3pxg_A Negative regulator of g 68.7 3.7 0.00013 39.1 3.9 18 45-62 201-218 (468)
446 2if2_A Dephospho-COA kinase; a 68.7 2.9 9.8E-05 34.4 2.8 15 47-61 3-17 (204)
447 3iwh_A Rhodanese-like domain p 68.6 3.3 0.00011 29.9 2.8 36 252-287 55-90 (103)
448 3gfo_A Cobalt import ATP-bindi 68.5 2.2 7.6E-05 37.3 2.1 18 44-61 33-50 (275)
449 2z0h_A DTMP kinase, thymidylat 68.5 2.3 7.9E-05 34.7 2.2 15 48-62 3-17 (197)
450 4e22_A Cytidylate kinase; P-lo 68.5 3.2 0.00011 35.7 3.1 18 44-61 26-43 (252)
451 3eme_A Rhodanese-like domain p 68.4 3.3 0.00011 29.7 2.8 36 252-287 55-90 (103)
452 1e4v_A Adenylate kinase; trans 68.4 2.8 9.7E-05 34.8 2.7 15 47-61 2-16 (214)
453 2vhj_A Ntpase P4, P4; non- hyd 68.2 2.5 8.6E-05 37.8 2.4 20 44-63 122-141 (331)
454 3p32_A Probable GTPase RV1496/ 68.2 68 0.0023 28.8 13.4 16 47-62 81-96 (355)
455 1g41_A Heat shock protein HSLU 68.2 3.1 0.00011 39.0 3.2 17 45-61 50-66 (444)
456 1nn5_A Similar to deoxythymidy 68.1 3.2 0.00011 34.4 3.0 19 44-62 8-26 (215)
457 2pze_A Cystic fibrosis transme 68.0 2.4 8.1E-05 35.9 2.2 18 44-61 33-50 (229)
458 3nh6_A ATP-binding cassette SU 67.7 2.4 8.4E-05 37.6 2.3 18 44-61 79-96 (306)
459 2ghi_A Transport protein; mult 67.7 2.4 8.3E-05 36.7 2.2 18 44-61 45-62 (260)
460 2ff7_A Alpha-hemolysin translo 67.5 2.4 8.2E-05 36.4 2.1 18 44-61 34-51 (247)
461 2pbr_A DTMP kinase, thymidylat 67.3 3.2 0.00011 33.6 2.8 15 47-61 2-16 (195)
462 2bbw_A Adenylate kinase 4, AK4 67.2 3.2 0.00011 35.4 2.9 17 45-61 27-43 (246)
463 2xb4_A Adenylate kinase; ATP-b 67.1 3.3 0.00011 34.8 2.9 15 47-61 2-16 (223)
464 3tqf_A HPR(Ser) kinase; transf 67.0 2.9 0.0001 33.5 2.3 19 44-62 15-33 (181)
465 2pcj_A ABC transporter, lipopr 66.9 2.4 8.3E-05 35.7 2.0 18 44-61 29-46 (224)
466 2oca_A DAR protein, ATP-depend 66.7 45 0.0015 31.6 11.3 74 84-167 349-426 (510)
467 3cmw_A Protein RECA, recombina 66.7 6.9 0.00024 43.3 5.9 39 45-92 34-72 (1706)
468 4g1u_C Hemin import ATP-bindin 66.7 2.5 8.7E-05 36.7 2.1 18 44-61 36-53 (266)
469 1htw_A HI0065; nucleotide-bind 66.6 3.2 0.00011 32.8 2.5 19 43-61 31-49 (158)
470 3hix_A ALR3790 protein; rhodan 66.4 5.7 0.0002 28.6 3.8 36 252-287 51-87 (106)
471 1uf9_A TT1252 protein; P-loop, 66.4 3.3 0.00011 33.9 2.8 15 47-61 10-24 (203)
472 2p5t_B PEZT; postsegregational 66.3 2 6.8E-05 37.0 1.4 16 46-61 33-48 (253)
473 1ji0_A ABC transporter; ATP bi 66.1 2.7 9.1E-05 35.9 2.1 18 44-61 31-48 (240)
474 1g6h_A High-affinity branched- 66.0 2.7 9.2E-05 36.3 2.1 18 44-61 32-49 (257)
475 1mv5_A LMRA, multidrug resista 65.9 2.3 8E-05 36.3 1.7 18 44-61 27-44 (243)
476 1b0u_A Histidine permease; ABC 65.9 2.8 9.6E-05 36.3 2.3 18 44-61 31-48 (262)
477 3auy_A DNA double-strand break 65.7 2.6 8.9E-05 38.7 2.1 15 48-62 28-42 (371)
478 2whx_A Serine protease/ntpase/ 65.6 11 0.00038 37.2 6.7 69 82-162 355-423 (618)
479 1vpl_A ABC transporter, ATP-bi 65.4 2.9 0.0001 36.1 2.3 18 44-61 40-57 (256)
480 2qi9_C Vitamin B12 import ATP- 64.9 3 0.0001 35.8 2.2 18 44-61 25-42 (249)
481 1vht_A Dephospho-COA kinase; s 64.6 3 0.0001 34.7 2.2 16 46-61 5-20 (218)
482 2nq2_C Hypothetical ABC transp 64.6 3 0.0001 35.9 2.1 18 44-61 30-47 (253)
483 1tf7_A KAIC; homohexamer, hexa 64.5 4.9 0.00017 38.8 3.9 30 42-71 36-65 (525)
484 2yz2_A Putative ABC transporte 64.5 3 0.0001 36.2 2.2 18 44-61 32-49 (266)
485 2ixe_A Antigen peptide transpo 64.3 3.1 0.0001 36.3 2.2 18 44-61 44-61 (271)
486 1rz3_A Hypothetical protein rb 64.2 4 0.00014 33.6 2.8 16 46-61 23-38 (201)
487 2olj_A Amino acid ABC transpor 64.1 3.2 0.00011 36.0 2.3 18 44-61 49-66 (263)
488 2grj_A Dephospho-COA kinase; T 63.5 4.4 0.00015 33.2 2.9 16 47-62 14-29 (192)
489 2ihy_A ABC transporter, ATP-bi 63.4 3.2 0.00011 36.3 2.2 18 44-61 46-63 (279)
490 2z0m_A 337AA long hypothetical 63.4 30 0.001 30.4 8.9 71 253-328 56-136 (337)
491 2zu0_C Probable ATP-dependent 63.4 4.3 0.00015 35.3 2.9 18 44-61 45-62 (267)
492 3tqc_A Pantothenate kinase; bi 63.3 5.2 0.00018 35.8 3.5 15 47-61 94-108 (321)
493 2d2e_A SUFC protein; ABC-ATPas 63.3 4.1 0.00014 34.9 2.8 18 44-61 28-45 (250)
494 2v26_A Myosin VI; calmodulin-b 63.0 6.3 0.00022 39.9 4.4 64 7-71 93-165 (784)
495 1fuu_A Yeast initiation factor 62.7 15 0.00053 33.3 6.9 73 252-329 88-170 (394)
496 1ltq_A Polynucleotide kinase; 62.4 3.5 0.00012 36.4 2.2 15 47-61 4-18 (301)
497 1odf_A YGR205W, hypothetical 3 62.3 4.5 0.00015 35.6 2.9 16 47-62 33-48 (290)
498 3qks_A DNA double-strand break 62.1 5.5 0.00019 32.9 3.3 15 47-61 25-39 (203)
499 3o8b_A HCV NS3 protease/helica 61.8 10 0.00035 37.6 5.6 67 81-162 395-461 (666)
500 2jeo_A Uridine-cytidine kinase 61.7 4.1 0.00014 34.7 2.5 18 44-61 24-41 (245)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-65 Score=492.41 Aligned_cols=375 Identities=35% Similarity=0.526 Sum_probs=338.5
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~ 83 (437)
++++.+|++++|++.+.++|+++||..||++|.++++.+++++++++++|||||||++|++|++..+...... ....++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~ 130 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRP 130 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCC
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCc
Confidence 4678899999999999999999999999999999999999999999999999999999999999998764321 112467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEE
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 163 (437)
++||++||++|+.|+++.+++++...++++..++||.....+...+..+++|+|+||++|.+++.... +.+.++++||+
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~~~~lVl 209 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF-ITFEDTRFVVL 209 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS-CCCTTCCEEEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC-cccccCCeEEE
Confidence 89999999999999999999999888889999999999888888888889999999999999887754 57899999999
Q ss_pred cccccccccccHHHHHHHHHhC--CccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChH
Q 013727 164 DEADRLLNDDFEKSLDEILNVI--PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241 (437)
Q Consensus 164 DE~h~~~~~~~~~~~~~i~~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (437)
||||++++.+|...+..++..+ +..+|++++|||++..+..+...++.++..+...........+.+.+..+....+.
T Consensus 210 DEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 289 (434)
T 2db3_A 210 DEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR 289 (434)
T ss_dssp ETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHH
T ss_pred ccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHH
Confidence 9999999999999999999875 56789999999999999999999999998888777666667788888888888888
Q ss_pred HHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCC
Q 013727 242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (437)
Q Consensus 242 ~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~ 321 (437)
..+..++...... +||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 290 ~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~ 368 (434)
T 2db3_A 290 SKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKN 368 (434)
T ss_dssp HHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTT
T ss_pred HHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCccc
Confidence 8888888776544 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEcc-ccHHHHHHHHHHhCCCCCCCCC
Q 013727 322 VDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQ-YELEWYLQIEKLIGKKLPEFPA 381 (437)
Q Consensus 322 ~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 381 (437)
+++||+||.|.+..+|+||+||+||.|+.|.+++++++ .+......+.+.+.....++|.
T Consensus 369 v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~ 429 (434)
T 2db3_A 369 IKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPD 429 (434)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCG
T ss_pred CCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999985 5677777888887666665553
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.2e-62 Score=468.36 Aligned_cols=372 Identities=32% Similarity=0.562 Sum_probs=338.4
Q ss_pred ccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 013727 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (437)
+...+|+++++++++.++|+.+||..|+++|.++++.+++++++++.+|||||||++|++|++..+.... .+.+
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~------~~~~ 107 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV------RETQ 107 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS------CSCC
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc------CCce
Confidence 4456899999999999999999999999999999999999999999999999999999999998764221 5678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEc
Q 013727 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 164 (437)
+||++|+++|+.|+.+.+..++...++.+..+.|+.....+...+..+++|+|+||++|.+.+.... +.+..+++||+|
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~-~~~~~~~~vViD 186 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS-LRTRAIKMLVLD 186 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC-ccHhheeEEEEc
Confidence 9999999999999999999999888899999999998877777776778999999999999887753 578889999999
Q ss_pred ccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCC-hHHH
Q 013727 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY-KDCY 243 (437)
Q Consensus 165 E~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 243 (437)
|||++.+.++...+..++..++...|++++|||++..+..+...++.+|..+...........+.+.+..+.... +...
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHH
T ss_pred cHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHH
Confidence 999999999999999999999999999999999999888888888888888777666556667777777666554 7777
Q ss_pred HHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCC
Q 013727 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD 323 (437)
Q Consensus 244 ~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~ 323 (437)
+..++......++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 267 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 346 (410)
T 2j0s_A 267 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVS 346 (410)
T ss_dssp HHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEE
T ss_pred HHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCC
Confidence 78888877888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCH
Q 013727 324 MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEE 383 (437)
Q Consensus 324 ~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 383 (437)
+||++|.|+++..|+||+||+||.|+.|.+++++.+.+...+..++++++..++++|.+.
T Consensus 347 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 347 LIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred EEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccch
Confidence 999999999999999999999999999999999999999999999999999999888754
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.4e-61 Score=465.43 Aligned_cols=377 Identities=36% Similarity=0.548 Sum_probs=332.2
Q ss_pred ccccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhh------
Q 013727 3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAEN------ 76 (437)
Q Consensus 3 ~~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~------ 76 (437)
.++++.+|+++++++.+.++|+.+||..|+++|.++++.++.++++++.+|||||||++|++|++..+......
T Consensus 10 ~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 89 (417)
T 2i4i_A 10 CPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 89 (417)
T ss_dssp CCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcc
Confidence 35678899999999999999999999999999999999999999999999999999999999999988754311
Q ss_pred ------cCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcC
Q 013727 77 ------QRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT 150 (437)
Q Consensus 77 ------~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~ 150 (437)
......+++||++||++|+.|+++.+++++...++.+..++|+.....+...+..+++|+|+||++|.+.+...
T Consensus 90 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 169 (417)
T 2i4i_A 90 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG 169 (417)
T ss_dssp HHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT
T ss_pred ccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC
Confidence 01112367999999999999999999999888889999999999888888888888999999999999988775
Q ss_pred CCCCCCCccEEEEcccccccccccHHHHHHHHHh--CCc--cceEEEEeecCchHHHHHHHHhcCCCcEEEccccccccc
Q 013727 151 KGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV--IPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVD 226 (437)
Q Consensus 151 ~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~--~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (437)
. +.+.++++||+||||++.+.+|...+..++.. ++. ..|++++|||++..+..+...++.++..+..........
T Consensus 170 ~-~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (417)
T 2i4i_A 170 K-IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSE 248 (417)
T ss_dssp S-BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCS
T ss_pred C-cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 4 57889999999999999999999999999874 332 578999999999999999999999988877766666667
Q ss_pred CceEEEEEccCCChHHHHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCce
Q 013727 227 TLKQQYRFVPAKYKDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305 (437)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 305 (437)
.+.+.+..++...+...+..++... .+.++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 7788888888888888888888876 567899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCC
Q 013727 306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFP 380 (437)
Q Consensus 306 ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 380 (437)
|||||+++++|+|+|++++||+++.|.++..|+||+||+||.|+.|.+++++++.+...+..+.+.+.....+++
T Consensus 329 vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 403 (417)
T 2i4i_A 329 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 403 (417)
T ss_dssp EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988866555544
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.2e-60 Score=452.57 Aligned_cols=370 Identities=33% Similarity=0.588 Sum_probs=333.7
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEE
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (437)
+..+|++++|++.+.++|.++||..|+++|.++++.+++++++++.+|||||||++|++|++..+.... .+.++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~------~~~~~ 92 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL------NKIQA 92 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS------CSCCE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc------CCccE
Confidence 446899999999999999999999999999999999999999999999999999999999998764322 45679
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcc
Q 013727 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (437)
Q Consensus 86 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 165 (437)
+|++|+++|+.|+.+.++.++...++.+..++|+.....+.......++|+|+||++|.+.+.... ..+.++++||+||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDE 171 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV-ADLSDCSLFIMDE 171 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEES
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC-cccccCCEEEEeC
Confidence 999999999999999999999888899999999988877777777789999999999998877643 4688899999999
Q ss_pred cccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHH
Q 013727 166 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV 245 (437)
Q Consensus 166 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (437)
||++.+.++...+..++..++...|++++|||++..+..+....+..+..+..... .....+.+.+..+....+...+.
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~ 250 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLN 250 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHH
Confidence 99999999999999999999888999999999999998888888888876655443 33355666777777777778888
Q ss_pred HHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEE
Q 013727 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV 325 (437)
Q Consensus 246 ~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~V 325 (437)
.++.....+++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 251 ~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~V 330 (400)
T 1s2m_A 251 TLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 330 (400)
T ss_dssp HHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEE
T ss_pred HHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEE
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCH
Q 013727 326 INYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEE 383 (437)
Q Consensus 326 i~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 383 (437)
|+++.|+++..|+||+||+||.|+.|.|++++++.+...+..+++.++..++++|...
T Consensus 331 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 331 INFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp EESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred EEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999998887654
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-60 Score=458.87 Aligned_cols=375 Identities=33% Similarity=0.531 Sum_probs=323.3
Q ss_pred ccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 013727 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (437)
+...+|+++++++.+.+.|+++||..|+++|.++++.++.++++++.+|||||||++|++|++..+.... .+.+
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~------~~~~ 110 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL------KATQ 110 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS------CSCC
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC------Ccee
Confidence 4557899999999999999999999999999999999999999999999999999999999998775432 4667
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhC-CCCcEEEECchHHHHHHhcCCCCCCCCccEEEE
Q 013727 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 163 (437)
++|++|+++|+.|+.+.++.++...++.+....|+.........+. .+++|+|+||++|.+.+.... +.+..+++||+
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~~~~vVi 189 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY-LSPKYIKMFVL 189 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS-SCSTTCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cccccCcEEEE
Confidence 9999999999999999999998888889999999988777666665 678999999999999887743 56888999999
Q ss_pred cccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCC-hHH
Q 013727 164 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY-KDC 242 (437)
Q Consensus 164 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 242 (437)
||||++.+.++...+..++..++...|++++|||++..+..+...++.++..+...........+.+.+....... +..
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 269 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHH
T ss_pred ECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHH
Confidence 9999999999999999999999999999999999999999999999999988877766666667777776666544 777
Q ss_pred HHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCC
Q 013727 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (437)
Q Consensus 243 ~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~ 322 (437)
.+..++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 270 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 349 (414)
T 3eiq_A 270 TLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQV 349 (414)
T ss_dssp HHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGC
T ss_pred HHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCC
Confidence 78888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCHHHH
Q 013727 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEEEV 386 (437)
Q Consensus 323 ~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 386 (437)
++||+++.|.+...|+||+||+||.|++|.|++++.+.+...+..++++++..++++|.+..++
T Consensus 350 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 350 SLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp SCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999998876554
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.9e-58 Score=441.47 Aligned_cols=368 Identities=32% Similarity=0.546 Sum_probs=326.3
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lv 87 (437)
.+|+++++++.+.++|+.+||..|+++|.++++.++.++++++.+|||+|||++|++|++..+.... .+.++||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~------~~~~~li 81 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT------GQVSVLV 81 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT------TCCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC------CCeeEEE
Confidence 4799999999999999999999999999999999999999999999999999999999988764321 4568999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCChHHHHHHhC-CCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcc
Q 013727 88 LSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (437)
Q Consensus 88 l~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 165 (437)
++|+++|+.|+.+.++++.... ++++..+.|+.........+. ..++|+|+||++|...+.... +.+.++++||+||
T Consensus 82 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~vViDE 160 (391)
T 1xti_A 82 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS-LNLKHIKHFILDE 160 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS-SCCTTCSEEEECS
T ss_pred ECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-ccccccCEEEEeC
Confidence 9999999999999999997765 788999999988766555443 347999999999998877644 5688999999999
Q ss_pred cccccc-cccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEccccc-ccccCceEEEEEccCCChHHH
Q 013727 166 ADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY-STVDTLKQQYRFVPAKYKDCY 243 (437)
Q Consensus 166 ~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 243 (437)
||++.+ .++...+..++...+...|++++|||+++....+...++..+..+...... .....+.+.+...+...+...
T Consensus 161 aH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T 1xti_A 161 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK 240 (391)
T ss_dssp HHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHH
T ss_pred HHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHH
Confidence 999987 578888999999888899999999999999999988899888877665443 233566677777777788888
Q ss_pred HHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCC
Q 013727 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD 323 (437)
Q Consensus 244 ~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~ 323 (437)
+..++....++++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 241 l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 241 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccc-cHHHHHHHHHHhCCCCCCCCCC
Q 013727 324 MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY-ELEWYLQIEKLIGKKLPEFPAE 382 (437)
Q Consensus 324 ~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 382 (437)
+||+++.|+++..|+||+||+||.|+.|.+++++.+. +...+..+++.++.+++++|..
T Consensus 321 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 321 IAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999999999999999876 5567888999999888887764
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.7e-58 Score=444.87 Aligned_cols=372 Identities=31% Similarity=0.506 Sum_probs=322.8
Q ss_pred ccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 013727 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 82 (437)
.+..+|+++++++.+.+.|+++||..|+++|.++++.++++ +++++.+|||||||++|++|++..+.... .+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~------~~ 95 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN------KY 95 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS------CS
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC------CC
Confidence 34678999999999999999999999999999999999987 89999999999999999999998875432 55
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEE
Q 013727 83 FFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (437)
Q Consensus 83 ~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~v 161 (437)
.+++|++|+++|+.|+.+.+++++... ++.+....++...... ....++|+|+||++|.+++.....+.+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 689999999999999999999987654 5677777776554221 234579999999999998877666678899999
Q ss_pred EEcccccccc-cccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCC-C
Q 013727 162 VLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-Y 239 (437)
Q Consensus 162 ViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (437)
|+||||++.+ ..+...+..+...++...|++++|||+++.+..+...++.++..+...........+.+.+...... .
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH
Confidence 9999999887 6888888899999999999999999999999999999999998887777666667777776666553 4
Q ss_pred hHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCC
Q 013727 240 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDI 319 (437)
Q Consensus 240 ~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~ 319 (437)
+...+..++....++++||||++++.++.+++.|+..+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+
T Consensus 253 ~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 332 (412)
T 3fht_A 253 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV 332 (412)
T ss_dssp HHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCC
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCc
Confidence 55666777777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCC------ChhhHHHHhhhcccCCCCceEEEEEcccc-HHHHHHHHHHhCCCCCCCCCCHHH
Q 013727 320 PSVDMVINYDIPT------NSKDYIHRVGRTARAGRTGVAISLVNQYE-LEWYLQIEKLIGKKLPEFPAEEEE 385 (437)
Q Consensus 320 ~~~~~Vi~~~~p~------s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~ 385 (437)
|++++||+++.|+ +..+|+||+||+||.|+.|.+++++++.+ ...+..+++.++..+++++.+..+
T Consensus 333 p~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 405 (412)
T 3fht_A 333 EQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 405 (412)
T ss_dssp TTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC------
T ss_pred cCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHH
Confidence 9999999999994 67899999999999999999999998764 788999999999998888765433
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-57 Score=429.69 Aligned_cols=361 Identities=38% Similarity=0.595 Sum_probs=321.5
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (437)
+..+|+++++++.+.+.|+++||..|+++|.++++.++++ +++++.+|||||||++|++|++..+... .+.+
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-------~~~~ 76 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-------NGIE 76 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-------SSCC
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-------CCCc
Confidence 3468999999999999999999999999999999999988 6999999999999999999988776421 4668
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEc
Q 013727 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 164 (437)
++|++|+++|+.|+.+.+..+....++.+..+.|+.........+. +++|+|+||++|.+.+.... +.+.++++||+|
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIiD 154 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT-LNLKNVKYFILD 154 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC-SCTTSCCEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCC-cccccCCEEEEe
Confidence 9999999999999999999998877888999999988766555544 58999999999998887643 568889999999
Q ss_pred ccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHH
Q 013727 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244 (437)
Q Consensus 165 E~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (437)
|||++.+.++...+..++..++...+++++|||++.........++.++..+..... ..+.+.+..+....+...+
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l 230 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNENERFEAL 230 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCGGGHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeChHHHHHHH
Confidence 999999999999999999999889999999999999988888888777665544322 3556666777766777777
Q ss_pred HHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCE
Q 013727 245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 324 (437)
Q Consensus 245 ~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~ 324 (437)
..++. ..+.++||||++++.++.+++.|+..+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 231 ~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~ 309 (367)
T 1hv8_A 231 CRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNC 309 (367)
T ss_dssp HHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSE
T ss_pred HHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCE
Confidence 76665 46678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCC
Q 013727 325 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFP 380 (437)
Q Consensus 325 Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 380 (437)
||+++.|+|+.+|+||+||+||.|++|.+++++++.+...+..+++.++.++++++
T Consensus 310 Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 310 VINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp EEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 99999999999999999999999999999999999999999999999999988765
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.5e-60 Score=452.56 Aligned_cols=373 Identities=34% Similarity=0.565 Sum_probs=185.6
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~ 83 (437)
.+...+|+++++++.+.+.|+++||..|+++|.++++.++.++++++.+|||+|||++|++|++..+.... .+.
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~------~~~ 90 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV------KAP 90 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC------CSC
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC------CCC
Confidence 45567899999999999999999999999999999999999999999999999999999999998775422 566
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEE
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 163 (437)
++||++|+++|+.|+.+.+.++....++.+..++|+.........+. +++|+|+||++|.+.+.... +.+.++++||+
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~-~~~~~~~~vIi 168 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR-FRTDKIKMFIL 168 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS-SCCTTCCEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC-cchhhCcEEEE
Confidence 89999999999999999999998888899999999988765554443 58999999999999887643 56788999999
Q ss_pred cccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCC-ChHH
Q 013727 164 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDC 242 (437)
Q Consensus 164 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 242 (437)
||||++.+.++...+..++..+++..|++++|||+++.+..+...++..|..+...........+.+.+..+... .+..
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYE 248 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHH
Confidence 999999999999999999999999999999999999998888888888888877665544444555544444433 2555
Q ss_pred HHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCC
Q 013727 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (437)
Q Consensus 243 ~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~ 322 (437)
.+..++.....+++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 249 ~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~ 328 (394)
T 1fuu_A 249 CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccC
Confidence 56666666677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCHH
Q 013727 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEE 384 (437)
Q Consensus 323 ~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 384 (437)
++||+++.|+++..|+||+||+||.|++|.+++++.+.+...+..+++.++..+++++.+..
T Consensus 329 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 329 SLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp --------------------------------------------------------------
T ss_pred CEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchh
Confidence 99999999999999999999999999999999999999999999999999998888776543
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.8e-57 Score=435.21 Aligned_cols=367 Identities=31% Similarity=0.508 Sum_probs=319.8
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~ 83 (437)
-..+|++++|++++.+.|+++||..|+++|.++++.++.+ +++++.+|||||||++|++|++..+.... .+.
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~------~~~ 76 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED------ASP 76 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC------CSC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC------CCc
Confidence 4579999999999999999999999999999999999998 89999999999999999999998765332 566
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEE
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 163 (437)
++||++|+++|+.|+.+.+++++...++.+....++..... ...+++|+|+||++|.+.+.... +.+.++++||+
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIi 151 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKL-MQLQKIKIFVL 151 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTC-BCCTTCCEEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCC-cccccCCEEEE
Confidence 89999999999999999999998877888888877654322 12368999999999998887643 57889999999
Q ss_pred cccccccc-cccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCC-ChH
Q 013727 164 DEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKD 241 (437)
Q Consensus 164 DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 241 (437)
||||++.+ .++...+..+...++...|++++|||+++.+..+...++.++..+...........+.+.+...... .+.
T Consensus 152 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (395)
T 3pey_A 152 DEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF 231 (395)
T ss_dssp ETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHH
T ss_pred EChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHH
Confidence 99999887 6788889999999998999999999999999999999998888877776666666666666665443 355
Q ss_pred HHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCC
Q 013727 242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (437)
Q Consensus 242 ~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~ 321 (437)
..+..++....++++||||++++.++.+++.|+..+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 232 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 232 DVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 56666666777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCC------ChhhHHHHhhhcccCCCCceEEEEEcc-ccHHHHHHHHHHhC-CCCCCCCCCH
Q 013727 322 VDMVINYDIPT------NSKDYIHRVGRTARAGRTGVAISLVNQ-YELEWYLQIEKLIG-KKLPEFPAEE 383 (437)
Q Consensus 322 ~~~Vi~~~~p~------s~~~~~Q~~GR~~R~g~~g~~i~~~~~-~~~~~~~~l~~~~~-~~~~~~~~~~ 383 (437)
+++||++|.|+ |+..|+||+||+||.|++|.+++++.+ ++...+..+++.++ ..+..++...
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 381 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDD 381 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSC
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHH
Confidence 99999999999 999999999999999999999999986 45667788888887 6666666543
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.9e-59 Score=458.00 Aligned_cols=369 Identities=31% Similarity=0.510 Sum_probs=177.1
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~ 83 (437)
+..+|++++|++++.+.|+++||..|+++|.++++.++.+ +++++.+|||||||++|++|++..+.... ..+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~------~~~ 163 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN------KYP 163 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS------CSC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC------CCC
Confidence 3568999999999999999999999999999999999987 89999999999999999999998775432 455
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEE
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 162 (437)
++||++|+++|+.|+.+.++.++... ++.+....++...... ....++|+|+||++|.+++.+...+.+.++++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 89999999999999999999987653 5666666666543221 1335789999999999999776666789999999
Q ss_pred Ecccccccc-cccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccC-CCh
Q 013727 163 LDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYK 240 (437)
Q Consensus 163 iDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 240 (437)
+||+|++.+ .++...+..+...++..+|++++|||++..+..+...++.++..+...........+.+.+..++. ..+
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 320 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHH
Confidence 999999987 678888889999999999999999999999999999999999888777766666666666665554 345
Q ss_pred HHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCC
Q 013727 241 DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP 320 (437)
Q Consensus 241 ~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~ 320 (437)
...+..++......++||||+++..++.+++.|...+..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 321 ~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 321 FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccc
Confidence 55566666666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCC------ChhhHHHHhhhcccCCCCceEEEEEcccc-HHHHHHHHHHhCCCCCCCCCCH
Q 013727 321 SVDMVINYDIPT------NSKDYIHRVGRTARAGRTGVAISLVNQYE-LEWYLQIEKLIGKKLPEFPAEE 383 (437)
Q Consensus 321 ~~~~Vi~~~~p~------s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ 383 (437)
++++||++|+|. +...|+||+||+||.|+.|.+++++++.+ ...+..+++.++..+..++.+.
T Consensus 401 ~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 470 (479)
T 3fmp_B 401 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 470 (479)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCcc
Confidence 999999999994 66899999999999999999999998765 7788888898888887776544
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.3e-56 Score=448.20 Aligned_cols=372 Identities=31% Similarity=0.476 Sum_probs=308.6
Q ss_pred cccCccccC----CCHHHHHHHHhCCCCCChHHHHHHHHhhh--cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCC
Q 013727 6 EVKTFKELG----LRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRT 79 (437)
Q Consensus 6 ~~~~f~~~~----l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~--~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~ 79 (437)
+..+|+++. |++++.++|+.+||..|||+|.++++.++ .++++++.+|||||||++|++|++..+...... .
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~--~ 92 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--S 92 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--S
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--c
Confidence 344677775 99999999999999999999999999999 678999999999999999999999988765321 1
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHhhc----CCCcEEEEEEcCCChHHHHHHhC-CCCcEEEECchHHHHHHhcCCCCC
Q 013727 80 VPAFFACVLSPTRELAIQISEQFEALGS----GISLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFS 154 (437)
Q Consensus 80 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~ 154 (437)
..+.++||++||++|+.|+.+.++++.. ...+.+..+.|+.........+. .+++|+|+||++|.+++.......
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 2456899999999999999999998753 23466788888888766665553 368999999999998886543335
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCc-------cceEEEEeecCchHHHHHHHHhcCCCcEEEccccc----c
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR-------MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY----S 223 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~-------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~ 223 (437)
+..+++||+||||++++.+|...+..++..++. ..|++++|||+++.+..+...++..+..+...... .
T Consensus 173 ~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 252 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252 (579)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccc
Confidence 788999999999999999999999888877643 56899999999999999988888887665543321 1
Q ss_pred cccCceEEEEEccCCCh-H-HH---HHHHHHh-cCCCcEEEEecchHHHHHHHHHHHhc---CCceEeccCCCCHHHHHH
Q 013727 224 TVDTLKQQYRFVPAKYK-D-CY---LVYILTE-VSASSTMVFTRTCDATRLLALMLRNL---GQRAIPISGHMSQSKRLG 294 (437)
Q Consensus 224 ~~~~~~~~~~~~~~~~~-~-~~---~~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~ 294 (437)
....+.+.+........ . .. +...+.. ..+.++||||+++..++.+++.|+.. ++.+..+||++++.+|..
T Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 253 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332 (579)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred cccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHH
Confidence 22344444544444321 1 11 2222222 45789999999999999999999987 889999999999999999
Q ss_pred HHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCC
Q 013727 295 ALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGK 374 (437)
Q Consensus 295 ~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~ 374 (437)
+++.|++|+.+|||||+++++|+|+|++++||++++|.++..|+||+||+||.|+.|.|++++.+.+...+..+++..+.
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 412 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 412 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCC
Q 013727 375 KLPEF 379 (437)
Q Consensus 375 ~~~~~ 379 (437)
.+...
T Consensus 413 ~~~~~ 417 (579)
T 3sqw_A 413 VIAKQ 417 (579)
T ss_dssp CCCEE
T ss_pred Ccccc
Confidence 76543
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.4e-56 Score=443.16 Aligned_cols=370 Identities=31% Similarity=0.480 Sum_probs=305.9
Q ss_pred cCccccC----CCHHHHHHHHhCCCCCChHHHHHHHHhhh--cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCC
Q 013727 8 KTFKELG----LRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVP 81 (437)
Q Consensus 8 ~~f~~~~----l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~--~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~ 81 (437)
.+|+++. |++++.++|+.+||..|+|+|.++++.++ .++++++.+|||||||++|++|++..+...... ...
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~ 145 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQY 145 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STT
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccC
Confidence 3566664 99999999999999999999999999999 678999999999999999999999998765421 123
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcC----CCcEEEEEEcCCChHHHHHHh-CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 82 AFFACVLSPTRELAIQISEQFEALGSG----ISLRCAVLVGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 82 ~~~~lvl~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~-~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
+.++||++||++|+.|+++.++++... ..+.+..+.|+.........+ ..+++|+|+||++|.+++.......+.
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 225 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 225 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccc
Confidence 568999999999999999999987432 245678888888876665554 346899999999999888654323577
Q ss_pred CccEEEEcccccccccccHHHHHHHHHhCC-------ccceEEEEeecCchHHHHHHHHhcCCCcEEEccccc----ccc
Q 013727 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIP-------RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY----STV 225 (437)
Q Consensus 157 ~~~~vViDE~h~~~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 225 (437)
.+++||+||||++++.+|...+..++..++ ...|++++|||+++.+..+...++..+..+...... ...
T Consensus 226 ~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (563)
T 3i5x_A 226 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH 305 (563)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSC
T ss_pred cceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccc
Confidence 899999999999999999999888877653 256899999999999999988888887665543221 122
Q ss_pred cCceEEEEEccCCChH-H----HHHHHHHh-cCCCcEEEEecchHHHHHHHHHHHhc---CCceEeccCCCCHHHHHHHH
Q 013727 226 DTLKQQYRFVPAKYKD-C----YLVYILTE-VSASSTMVFTRTCDATRLLALMLRNL---GQRAIPISGHMSQSKRLGAL 296 (437)
Q Consensus 226 ~~~~~~~~~~~~~~~~-~----~~~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~ 296 (437)
..+.+.+......... . .+...+.. ..+.++||||+++..++.+++.|+.. ++.+..+||++++.+|..++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~ 385 (563)
T 3i5x_A 306 ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 385 (563)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred ccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Confidence 3444555444443221 1 12222222 46789999999999999999999987 88999999999999999999
Q ss_pred HHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCC
Q 013727 297 NKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKL 376 (437)
Q Consensus 297 ~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~ 376 (437)
+.|++|+.+|||||+++++|+|+|++++||+++.|.++..|+||+||+||.|+.|.+++++.+.+...+..+++..+..+
T Consensus 386 ~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~ 465 (563)
T 3i5x_A 386 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVI 465 (563)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCC
T ss_pred HHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CCC
Q 013727 377 PEF 379 (437)
Q Consensus 377 ~~~ 379 (437)
...
T Consensus 466 ~~~ 468 (563)
T 3i5x_A 466 AKQ 468 (563)
T ss_dssp CEE
T ss_pred ccc
Confidence 543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-54 Score=405.77 Aligned_cols=336 Identities=34% Similarity=0.564 Sum_probs=290.3
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 013727 15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (437)
Q Consensus 15 l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L 94 (437)
|++++.++|+++||..|+++|.++++.+++++++++.+|||+|||++|++|++. .+.+++|++|+++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~------------~~~~~liv~P~~~L 68 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE------------LGMKSLVVTPTREL 68 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH------------HTCCEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh------------hcCCEEEEeCCHHH
Confidence 678999999999999999999999999999999999999999999999988875 24569999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccccc
Q 013727 95 AIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDF 174 (437)
Q Consensus 95 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~ 174 (437)
+.|+.+.+++++...++.+..++|+.........+.. ++|+|+||++|.+.+.... +.+.++++||+||||++.+.++
T Consensus 69 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~-~~~~~~~~iViDEah~~~~~~~ 146 (337)
T 2z0m_A 69 TRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGV-IDLSSFEIVIIDEADLMFEMGF 146 (337)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTS-CCGGGCSEEEEESHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCC-cchhhCcEEEEEChHHhhcccc
Confidence 9999999999988888899999999887766655544 8999999999998877643 4678899999999999999999
Q ss_pred HHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCC
Q 013727 175 EKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS 254 (437)
Q Consensus 175 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 254 (437)
...+..++...+...+++++|||+++........++.++..+... .....+.+.+..+....+. ....+....+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 221 (337)
T 2z0m_A 147 IDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRS--KVQALRENKDK 221 (337)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHH--HHHHHHTCCCS
T ss_pred HHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHH--HHHHHHhCCCC
Confidence 999999999999889999999999999888888888887766433 2233455555555555433 33556667788
Q ss_pred cEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCCh
Q 013727 255 STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 334 (437)
Q Consensus 255 ~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~ 334 (437)
++||||++++.++.+++.|+ .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 99999999999999998886 57899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCC
Q 013727 335 KDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGK 374 (437)
Q Consensus 335 ~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~ 374 (437)
..|+||+||+||.|++|.+++++. .+...+..+++.++.
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred HHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999999999999 888888877776643
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-55 Score=430.45 Aligned_cols=369 Identities=28% Similarity=0.455 Sum_probs=265.1
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~ 83 (437)
+...|...++++++.+.+.+.||..|+++|.++++.++++ +++++.+|||||||++|+++++..+.... .+.
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~------~~~ 190 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV------PKP 190 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC------CSC
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC------CCc
Confidence 3445777788999999999999999999999999999998 99999999999999999999998875432 456
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEE
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 163 (437)
++||++|+++|+.|+.+.+++++...++.+....++.... ....+++|+|+||++|.+.+.... +.+.++++||+
T Consensus 191 ~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~-~~~~~~~lIIi 265 (508)
T 3fho_A 191 QAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQ-LDARDIKVFVL 265 (508)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCC-ccccCCCEEEE
Confidence 8999999999999999999999877666666655554322 223468999999999999887643 57889999999
Q ss_pred cccccccc-cccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccC-CChH
Q 013727 164 DEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKD 241 (437)
Q Consensus 164 DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 241 (437)
||||++.+ .++...+..+...++...|++++|||+++.+..+...+..++..+...........+.+.+..... ..+.
T Consensus 266 DEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~ 345 (508)
T 3fho_A 266 DEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKY 345 (508)
T ss_dssp CCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHH
T ss_pred echhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHH
Confidence 99999887 678899999999999999999999999999999999999988887766665555566666655543 3455
Q ss_pred HHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCC
Q 013727 242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (437)
Q Consensus 242 ~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~ 321 (437)
..+..++....++++||||++++.++.++..|...+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 346 ~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~ 425 (508)
T 3fho_A 346 NVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQ 425 (508)
T ss_dssp HHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTT
T ss_pred HHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccC
Confidence 66667777777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCC------CChhhHHHHhhhcccCCCCceEEEEEcc-ccHHHHHHHHHHhCCCCCCCCCCHHH
Q 013727 322 VDMVINYDIP------TNSKDYIHRVGRTARAGRTGVAISLVNQ-YELEWYLQIEKLIGKKLPEFPAEEEE 385 (437)
Q Consensus 322 ~~~Vi~~~~p------~s~~~~~Q~~GR~~R~g~~g~~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 385 (437)
+++||+++.| .|+..|+||+||+||.|+.|.+++++.+ .+...+..+++.++..+++++..+.+
T Consensus 426 v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~ 496 (508)
T 3fho_A 426 VNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYE 496 (508)
T ss_dssp CCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC--------
T ss_pred CCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHH
Confidence 9999999999 8899999999999999999999999974 56777899999999999988866533
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.1e-52 Score=415.99 Aligned_cols=339 Identities=17% Similarity=0.205 Sum_probs=269.5
Q ss_pred CccccCCCHHHHHHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 013727 9 TFKELGLRDELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (437)
Q Consensus 9 ~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lv 87 (437)
+++++++++.+.+.|++ +||..|+|+|.++++.+++++++++.+|||+|||++|++|++. ...++||
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------------~~g~~lV 89 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------------SDGFTLV 89 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------------SSSEEEE
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------------cCCcEEE
Confidence 34568899999999998 7999999999999999999999999999999999999999975 3457999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHH------hCCCCcEEEECchHHH------HHHhcCCCCCC
Q 013727 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA------LGKRPHIVVATPGRLM------DHLTNTKGFSL 155 (437)
Q Consensus 88 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~iiv~Tp~~l~------~~l~~~~~~~~ 155 (437)
++|+++|+.|+.+.+..+ ++.+..+.|+......... ....++|+|+||++|. +.+.. ...+
T Consensus 90 isP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~ 163 (591)
T 2v1x_A 90 ICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEA 163 (591)
T ss_dssp ECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHT
T ss_pred EeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhc
Confidence 999999999999999987 4778888888776543322 2457899999999874 22322 1246
Q ss_pred CCccEEEEcccccccccc--cHHHHHH--HHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEE
Q 013727 156 GTLKYLVLDEADRLLNDD--FEKSLDE--ILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQ 231 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~--~~~~~~~--i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (437)
.++++|||||||++.+.+ |.+.+.. .+....+..+++++|||+++.+.......+..+........ ....++...
T Consensus 164 ~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-~~r~nl~~~ 242 (591)
T 2v1x_A 164 RRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-FNRPNLYYE 242 (591)
T ss_dssp TCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC-CCCTTEEEE
T ss_pred cCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC-CCCcccEEE
Confidence 789999999999998755 6665543 23333346789999999999887766666654432222221 122333322
Q ss_pred EEEccCC--ChHHHHHHHHHh-cCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEE
Q 013727 232 YRFVPAK--YKDCYLVYILTE-VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308 (437)
Q Consensus 232 ~~~~~~~--~~~~~~~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv 308 (437)
+...... .....+..++.. ..+.++||||++++.++.+++.|+..|+.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 243 v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlV 322 (591)
T 2v1x_A 243 VRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVV 322 (591)
T ss_dssp EEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEE
T ss_pred EEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 2222211 122334444443 3678999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHH
Q 013727 309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYL 366 (437)
Q Consensus 309 ~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~ 366 (437)
||+++++|+|+|++++||++++|.|.+.|+|++||+||.|..|.|++++.+.|...+.
T Consensus 323 AT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~ 380 (591)
T 2v1x_A 323 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRIS 380 (591)
T ss_dssp ECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHH
T ss_pred EechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887765443
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.6e-52 Score=408.66 Aligned_cols=338 Identities=20% Similarity=0.272 Sum_probs=274.6
Q ss_pred cCccccCCCHHHHHHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEE
Q 013727 8 KTFKELGLRDELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~l 86 (437)
.+|++++|++++.+.|++ +||..|+++|.++++.+++++++++.+|||+|||++|++|++. ....+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------------~~g~~l 69 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL------------LNGLTV 69 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH------------SSSEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH------------hCCCEE
Confidence 589999999999999998 8999999999999999999999999999999999999999874 345699
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHH----HhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEE
Q 013727 87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL----ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (437)
Q Consensus 87 vl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 162 (437)
|++|+++|+.|+.+.++.+ ++.+..+.++........ .....++|+|+||++|....... .+...++++||
T Consensus 70 vi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~-~l~~~~~~~vV 144 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE-HLAHWNPVLLA 144 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH-HHTTSCEEEEE
T ss_pred EECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH-HHhhCCCCEEE
Confidence 9999999999999999886 477778888776543322 12346899999999985321110 12346799999
Q ss_pred Ecccccccccc--cHHHHHH---HHHhCCccceEEEEeecCchHHHH-HHHHh-cCCCcEEEcccccccccCceEEEEEc
Q 013727 163 LDEADRLLNDD--FEKSLDE---ILNVIPRMRQTYLFSATMTKKVKK-LQRAC-LKNPVKIEAASKYSTVDTLKQQYRFV 235 (437)
Q Consensus 163 iDE~h~~~~~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (437)
+||||++.+.+ |.+.+.. +...++ ..+++++|||+++.+.. +...+ +.++..+..... ..++ .+...
T Consensus 145 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~~l--~~~v~ 218 (523)
T 1oyw_A 145 VDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD---RPNI--RYMLM 218 (523)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC---CTTE--EEEEE
T ss_pred EeCccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC---CCce--EEEEE
Confidence 99999998754 6555443 444454 47799999999987654 33333 344443322211 1232 34444
Q ss_pred cCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCC
Q 013727 236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 315 (437)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~ 315 (437)
....+...+..++....+.++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 219 ~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 219 EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp ECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred eCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 55566677777887778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHH
Q 013727 316 GLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (437)
Q Consensus 316 Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l 368 (437)
|+|+|++++||+++.|.|++.|+||+||+||.|..|.+++++++.|...+..+
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~ 351 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988876655443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.9e-52 Score=402.47 Aligned_cols=351 Identities=19% Similarity=0.228 Sum_probs=279.5
Q ss_pred HHHHHHHh-CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 013727 18 ELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (437)
Q Consensus 18 ~~~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 96 (437)
++.+.+++ +|| +|+++|.++++.+++++++++.+|||||||++|+++++..+. .+.++||++|+++|+.
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---------~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---------CCCEEEEEECCHHHHH
Confidence 44555655 688 799999999999999999999999999999999988877652 6678999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEEEcCCCh---HHHHHHhCCC-CcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc-
Q 013727 97 QISEQFEALGSGISLRCAVLVGGVDM---MQQTLALGKR-PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN- 171 (437)
Q Consensus 97 q~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~- 171 (437)
|+++.++.++. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||++..
T Consensus 79 q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 79 QTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHC
T ss_pred HHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhc
Confidence 99999999987 78899999999887 4444444444 89999999999887764 4577899999999987653
Q ss_pred ----------cccHHH-HHHHHHhCC-----------ccceEEEEeec-CchHHH-HHHHHhcCCCcEEEcccccccccC
Q 013727 172 ----------DDFEKS-LDEILNVIP-----------RMRQTYLFSAT-MTKKVK-KLQRACLKNPVKIEAASKYSTVDT 227 (437)
Q Consensus 172 ----------~~~~~~-~~~i~~~~~-----------~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 227 (437)
.+|... +..++..++ ...|++++||| .+..+. .+...... +...........
T Consensus 155 ~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 230 (414)
T 3oiy_A 155 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARN 230 (414)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCS
T ss_pred cchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcccccccc
Confidence 556666 778887776 77899999999 554433 22332222 122222233344
Q ss_pred ceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceE-eccCCCCHHHHHHHHHHhhCCCceE
Q 013727 228 LKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI-PISGHMSQSKRLGALNKFKAGECNI 306 (437)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~i 306 (437)
+.+.+... .+...+..++.. .+.++||||+++..++.+++.|+..++.+. .+||. +|. ++.|++|+.+|
T Consensus 231 i~~~~~~~---~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~v 300 (414)
T 3oiy_A 231 ITHVRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINI 300 (414)
T ss_dssp EEEEEESS---CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSE
T ss_pred chheeecc---CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeE
Confidence 55544433 345556666666 448999999999999999999999999998 89984 444 99999999999
Q ss_pred EEE----cCCCCCCCCCCC-CCEEEEecCC--CChhhHHHHhhhcccCC----CCceEEEEEccccHHHHHHHHHHhC--
Q 013727 307 LIC----TDVASRGLDIPS-VDMVINYDIP--TNSKDYIHRVGRTARAG----RTGVAISLVNQYELEWYLQIEKLIG-- 373 (437)
Q Consensus 307 lv~----T~~~~~Gid~~~-~~~Vi~~~~p--~s~~~~~Q~~GR~~R~g----~~g~~i~~~~~~~~~~~~~l~~~~~-- 373 (437)
||| |+++++|+|+|+ +++||++|.| .++.+|+||+||+||.| ..|.+++++ .+...+..+++.++
T Consensus 301 Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~ 378 (414)
T 3oiy_A 301 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLI 378 (414)
T ss_dssp EEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHH
T ss_pred EEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhccc
Confidence 999 999999999999 9999999999 99999999999999998 478999988 77888888999888
Q ss_pred CCCCCCCCCHHHHHHHHHhHHHhhh
Q 013727 374 KKLPEFPAEEEEVLLLLERVTEAKR 398 (437)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (437)
..++..+.+..++.....+..+.++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~r~ 403 (414)
T 3oiy_A 379 AEEEIIEEAEANWKELVHEVEESRR 403 (414)
T ss_dssp HCCCEEEGGGCCHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHH
Confidence 7777777766666666666555544
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.7e-48 Score=394.36 Aligned_cols=336 Identities=22% Similarity=0.264 Sum_probs=262.5
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHh-hhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPH-ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 82 (437)
+.+..+|++++|++++.+.++++||..|+++|.++++. +.+++++++++|||||||+++.++++..+.. .+
T Consensus 4 ~~~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~ 75 (715)
T 2va8_A 4 ELEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NG 75 (715)
T ss_dssp --CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SC
T ss_pred ccccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CC
Confidence 34556899999999999999999999999999999999 7889999999999999999999999988764 35
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEE
Q 013727 83 FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (437)
Q Consensus 83 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 162 (437)
.+++|++|+++|+.|+++.++.+. ..++.+..++|+....... . ..++|+|+||++|...+.... ..+.++++||
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vI 150 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRP-EWLNEVNYFV 150 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCC-GGGGGEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCCh-hHhhccCEEE
Confidence 689999999999999999996554 3478888888876553321 2 268999999999998887754 3478899999
Q ss_pred EcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceE------------
Q 013727 163 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQ------------ 230 (437)
Q Consensus 163 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 230 (437)
+||+|++.+..+...+..++..++ ..|++++|||+++. ..+..++.... +.... .. ..+..
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~l~~~~--~~~~~--r~-~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKWLGAEP--VATNW--RP-VPLIEGVIYPERKKKEY 223 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHHHTCEE--EECCC--CS-SCEEEEEEEECSSTTEE
T ss_pred EechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHHhCCCc--cCCCC--CC-CCceEEEEecCCcccce
Confidence 999999888788888888887776 68899999999863 55666543211 11100 00 00111
Q ss_pred EEEEcc--------CCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcC-------------------------
Q 013727 231 QYRFVP--------AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG------------------------- 277 (437)
Q Consensus 231 ~~~~~~--------~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~------------------------- 277 (437)
...+.+ .......+...+ ..++++||||++++.++.++..|....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 224 NVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp EEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred eeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 111111 111222222222 256899999999999999999998642
Q ss_pred -----------CceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEE----ec-------CCCChh
Q 013727 278 -----------QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YD-------IPTNSK 335 (437)
Q Consensus 278 -----------~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~----~~-------~p~s~~ 335 (437)
..+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.|..
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~ 381 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIM 381 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHH
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHH
Confidence 24888999999999999999999999999999999999999999999999 88 899999
Q ss_pred hHHHHhhhcccCCC--CceEEEEEcccc
Q 013727 336 DYIHRVGRTARAGR--TGVAISLVNQYE 361 (437)
Q Consensus 336 ~~~Q~~GR~~R~g~--~g~~i~~~~~~~ 361 (437)
+|.||+||+||.|. .|.|+.++...+
T Consensus 382 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 382 EYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999984 689999987765
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.7e-48 Score=397.45 Aligned_cols=351 Identities=19% Similarity=0.211 Sum_probs=275.8
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHh-hhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEE
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPH-ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~l 86 (437)
++|++++|++++.+.++++||..|+++|.++++. +.+++++++++|||||||++|.++++..+.. .+.+++
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~~l 72 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------QGGKAV 72 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH--------HCSEEE
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCCEEE
Confidence 3699999999999999999999999999999998 8889999999999999999999999988764 246799
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccc
Q 013727 87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (437)
Q Consensus 87 vl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~ 166 (437)
|++|+++|+.|+++.++.+.. .++++..++|+....... ...++|+|+||++|...+.... ..+.++++||+||+
T Consensus 73 ~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 73 YIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGS-SWIKDVKILVADEI 147 (720)
T ss_dssp EECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTC-TTGGGEEEEEEETG
T ss_pred EEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcCh-hhhhcCCEEEEECC
Confidence 999999999999999976543 478888999876543321 2358999999999988877644 34788999999999
Q ss_pred ccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEE------EEEcc----
Q 013727 167 DRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQ------YRFVP---- 236 (437)
Q Consensus 167 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---- 236 (437)
|++.+..+...+..++..++...|++++|||+++ ...+..++.... +.. .... ..+... .....
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~--~~~--~~rp-~~l~~~~~~~~~~~~~~~~~~ 221 (720)
T 2zj8_A 148 HLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAEL--IVS--DWRP-VKLRRGVFYQGFVTWEDGSID 221 (720)
T ss_dssp GGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEE--EEC--CCCS-SEEEEEEEETTEEEETTSCEE
T ss_pred cccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCcc--cCC--CCCC-CcceEEEEeCCeeeccccchh
Confidence 9998888999999999888778899999999986 355555443211 110 0000 011111 11111
Q ss_pred -CCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcC---------------------------------CceEe
Q 013727 237 -AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG---------------------------------QRAIP 282 (437)
Q Consensus 237 -~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~---------------------------------~~~~~ 282 (437)
.......+...+. .++++||||++++.++.++..|.+.. ..+..
T Consensus 222 ~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~ 299 (720)
T 2zj8_A 222 RFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAF 299 (720)
T ss_dssp ECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEE
T ss_pred hhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeee
Confidence 1223333444443 46899999999999999999887531 24889
Q ss_pred ccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEE----ec----CCCChhhHHHHhhhcccCC--CCce
Q 013727 283 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YD----IPTNSKDYIHRVGRTARAG--RTGV 352 (437)
Q Consensus 283 ~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~----~~----~p~s~~~~~Q~~GR~~R~g--~~g~ 352 (437)
+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.|..+|+||+||+||.| ..|.
T Consensus 300 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~ 379 (720)
T 2zj8_A 300 HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGE 379 (720)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEE
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCce
Confidence 999999999999999999999999999999999999999999998 66 5899999999999999998 4689
Q ss_pred EEEEEccccHHHHHHHHHHhCCCCCCCCC
Q 013727 353 AISLVNQYELEWYLQIEKLIGKKLPEFPA 381 (437)
Q Consensus 353 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 381 (437)
|+.++...+.. ..+++++....+++..
T Consensus 380 ~~~l~~~~~~~--~~~~~~~~~~~~~i~s 406 (720)
T 2zj8_A 380 GIIVSTSDDPR--EVMNHYIFGKPEKLFS 406 (720)
T ss_dssp EEEECSSSCHH--HHHHHHTTSCCCCCCC
T ss_pred EEEEecCccHH--HHHHHHhcCCCCCcEe
Confidence 99999887733 2334555555555443
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.6e-49 Score=402.28 Aligned_cols=356 Identities=22% Similarity=0.227 Sum_probs=228.3
Q ss_pred HHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 20 VEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 20 ~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
.+.++.+||..|+++|.++++.++.++++++++|||+|||++|++|++..+..... ..+.++||++|+++|+.|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT----TCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc----CCCCeEEEEECCHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999988765321 12367999999999999999
Q ss_pred HHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccc-cHHHH
Q 013727 100 EQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSL 178 (437)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~-~~~~~ 178 (437)
+.+++++...++.+..++|+.....+...+..+++|+|+||++|.+.+.......+.++++||+||||++.+.. +...+
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHH
Confidence 99999988778999999998765444444445689999999999998887543368889999999999987643 22223
Q ss_pred HHHHHh-----CCccceEEEEeecCc--------hHHHHHHHHh---------------------cCCCcEEEccccccc
Q 013727 179 DEILNV-----IPRMRQTYLFSATMT--------KKVKKLQRAC---------------------LKNPVKIEAASKYST 224 (437)
Q Consensus 179 ~~i~~~-----~~~~~~~i~~SAT~~--------~~~~~~~~~~---------------------~~~~~~~~~~~~~~~ 224 (437)
...+.. .++..+++++|||+. .....+.... ...|...........
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCS
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCccc
Confidence 223332 245678999999996 1122222211 011110000000000
Q ss_pred --------------------------------------------------------------------------------
Q 013727 225 -------------------------------------------------------------------------------- 224 (437)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (437)
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------ccCceEEEEE-------------c---cCCChHHHHHHHHHhc----CC
Q 013727 225 -------------------------------VDTLKQQYRF-------------V---PAKYKDCYLVYILTEV----SA 253 (437)
Q Consensus 225 -------------------------------~~~~~~~~~~-------------~---~~~~~~~~~~~~l~~~----~~ 253 (437)
...+.+.+.. . ....+...+..++... .+
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 0000000000 0 1233445555666554 56
Q ss_pred CcEEEEecchHHHHHHHHHHHhcC----CceEec--------cCCCCHHHHHHHHHHhhC-CCceEEEEcCCCCCCCCCC
Q 013727 254 SSTMVFTRTCDATRLLALMLRNLG----QRAIPI--------SGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIP 320 (437)
Q Consensus 254 ~~~iVf~~s~~~~~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~Gid~~ 320 (437)
.++||||+++..++.+++.|+..+ +.+..+ |++|++.+|..+++.|++ |+.+|||||+++++|+|+|
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip 478 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 478 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---C
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCc
Confidence 899999999999999999999987 788888 559999999999999998 9999999999999999999
Q ss_pred CCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHH----HHHhCCCCCCCCC
Q 013727 321 SVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI----EKLIGKKLPEFPA 381 (437)
Q Consensus 321 ~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l----~~~~~~~~~~~~~ 381 (437)
++++||+||+|+++..|+||+|| ||. ..|.++.++...+......+ ++.+...+++++.
T Consensus 479 ~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 541 (696)
T 2ykg_A 479 QCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQT 541 (696)
T ss_dssp CCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999 998 78999999988777555554 4445444444433
No 22
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=6.4e-48 Score=404.80 Aligned_cols=349 Identities=19% Similarity=0.211 Sum_probs=271.3
Q ss_pred HHHH-hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 013727 21 EACE-NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (437)
Q Consensus 21 ~~l~-~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 99 (437)
+.++ .+|| +|+++|.++++.++.+++++++||||||||++|+++++..+. .+.++||++||++|+.|+.
T Consensus 69 ~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---------~~~~~Lil~PtreLa~Q~~ 138 (1104)
T 4ddu_A 69 SFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVKQTL 138 (1104)
T ss_dssp HHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHHHHH
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---------cCCeEEEEechHHHHHHHH
Confidence 3443 4799 699999999999999999999999999999988888777662 6778999999999999999
Q ss_pred HHHHHhhcCCCcEEEEEEcCCCh---HHHHHHhCCC-CcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccc----
Q 013727 100 EQFEALGSGISLRCAVLVGGVDM---MQQTLALGKR-PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN---- 171 (437)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~---- 171 (437)
+.++.++ ..++.+..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||++..
T Consensus 139 ~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~ 214 (1104)
T 4ddu_A 139 ERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRN 214 (1104)
T ss_dssp HHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHH
T ss_pred HHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCcccccccc
Confidence 9999987 678899999999887 4555555554 99999999999887764 4677899999999986554
Q ss_pred -------cccHHH-HHHHHHhCC-----------ccceEEEEeec-CchHHH-HHHHHhcCCCcEEEcccccccccCceE
Q 013727 172 -------DDFEKS-LDEILNVIP-----------RMRQTYLFSAT-MTKKVK-KLQRACLKNPVKIEAASKYSTVDTLKQ 230 (437)
Q Consensus 172 -------~~~~~~-~~~i~~~~~-----------~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (437)
.+|... +..++..++ ...|++++||| .+..+. .+....+. +..........++.+
T Consensus 215 ~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~ 290 (1104)
T 4ddu_A 215 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITH 290 (1104)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEE
T ss_pred chhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCcee
Confidence 567666 788888776 78899999999 454433 22222222 222333334455555
Q ss_pred EEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceE-eccCCCCHHHHHHHHHHhhCCCceEEEE
Q 013727 231 QYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI-PISGHMSQSKRLGALNKFKAGECNILIC 309 (437)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~ilv~ 309 (437)
.+..+ .+...+..++.. .++++||||++++.++.++..|+..|+.+. .+|| +|.+ ++.|++|+.+||||
T Consensus 291 ~~~~~---~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 291 VRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp EEESC---CCHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEE
T ss_pred EEEec---CHHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEE
Confidence 55444 355556666666 348999999999999999999999999998 9998 2555 99999999999999
Q ss_pred ----cCCCCCCCCCCC-CCEEEEecCCC----------------------------------------------------
Q 013727 310 ----TDVASRGLDIPS-VDMVINYDIPT---------------------------------------------------- 332 (437)
Q Consensus 310 ----T~~~~~Gid~~~-~~~Vi~~~~p~---------------------------------------------------- 332 (437)
|+++++|+|+|+ +++||+||+|.
T Consensus 361 tas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred ecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999999998
Q ss_pred --------------------ChhhHHHHhhhcccCCCCc--eEEEEEccccHHHHHHHHHHhC--CCCCCCCCCHHHHHH
Q 013727 333 --------------------NSKDYIHRVGRTARAGRTG--VAISLVNQYELEWYLQIEKLIG--KKLPEFPAEEEEVLL 388 (437)
Q Consensus 333 --------------------s~~~~~Q~~GR~~R~g~~g--~~i~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~ 388 (437)
++.+|+||+||+||.|..| .+++++..+|...+..+++.++ ..++..+.++.++..
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 520 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKE 520 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHHHTCCCEEEGGGCCHHH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhhhcccccccccccCHHH
Confidence 7789999999999976432 3444444488888888888775 455555555444544
Q ss_pred HHHhHHHhh
Q 013727 389 LLERVTEAK 397 (437)
Q Consensus 389 ~~~~~~~~~ 397 (437)
+..++.+..
T Consensus 521 ~~~~i~~~r 529 (1104)
T 4ddu_A 521 LVHEVEESR 529 (1104)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhHHH
Confidence 455444333
No 23
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=7.1e-48 Score=393.30 Aligned_cols=332 Identities=19% Similarity=0.242 Sum_probs=261.8
Q ss_pred cCccccC--CCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEE
Q 013727 8 KTFKELG--LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (437)
Q Consensus 8 ~~f~~~~--l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (437)
.+|++++ |++.+.+.++++||..|+++|.++++.+.+++++++++|||||||+++.++++..+. .+.++
T Consensus 1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~---------~~~~~ 71 (702)
T 2p6r_A 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI---------KGGKS 71 (702)
T ss_dssp CCSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH---------TTCCE
T ss_pred CchhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH---------hCCcE
Confidence 3799999 999999999999999999999999999999999999999999999999999998875 35679
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcc
Q 013727 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (437)
Q Consensus 86 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 165 (437)
+|++|+++|+.|+++.++.+. ..++++..++|+...... ....++|+|+||++|...+.... ..+.++++||+||
T Consensus 72 l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~-~~l~~~~~vIiDE 146 (702)
T 2p6r_A 72 LYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRA-SWIKAVSCLVVDE 146 (702)
T ss_dssp EEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC-SGGGGCCEEEETT
T ss_pred EEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcCh-hHHhhcCEEEEee
Confidence 999999999999999996554 447888899987655332 12368999999999998887754 3478899999999
Q ss_pred cccccccccHHHHHHHHHhC---CccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEE------EEEcc
Q 013727 166 ADRLLNDDFEKSLDEILNVI---PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQ------YRFVP 236 (437)
Q Consensus 166 ~h~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 236 (437)
+|++.+.++...+..++..+ .+..|++++|||+++ ...+..++.. +. +.... .. ..+... .....
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~~-~~-~~~~~--r~-~~l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 147 IHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLDA-DY-YVSDW--RP-VPLVEGVLCEGTLELFD 220 (702)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTTC-EE-EECCC--CS-SCEEEEEECSSEEEEEE
T ss_pred eeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhCC-Cc-ccCCC--CC-ccceEEEeeCCeeeccC
Confidence 99998888888877776655 467899999999986 4566665432 21 11111 00 011111 11111
Q ss_pred CCC-------hHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhc------------------------------CCc
Q 013727 237 AKY-------KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL------------------------------GQR 279 (437)
Q Consensus 237 ~~~-------~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~------------------------------~~~ 279 (437)
... ....+...+. .++++||||++++.++.++..|... +..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 298 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG 298 (702)
T ss_dssp TTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTT
T ss_pred cchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcC
Confidence 111 2333333332 5789999999999999999988753 135
Q ss_pred eEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEE----ec---CCCChhhHHHHhhhcccCC--CC
Q 013727 280 AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YD---IPTNSKDYIHRVGRTARAG--RT 350 (437)
Q Consensus 280 ~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~----~~---~p~s~~~~~Q~~GR~~R~g--~~ 350 (437)
+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.|..+|.||+||+||.| ..
T Consensus 299 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~ 378 (702)
T 2p6r_A 299 AAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDER 378 (702)
T ss_dssp CCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred eEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 778999999999999999999999999999999999999999999998 66 7899999999999999998 46
Q ss_pred ceEEEEEcccc
Q 013727 351 GVAISLVNQYE 361 (437)
Q Consensus 351 g~~i~~~~~~~ 361 (437)
|.|+.++...+
T Consensus 379 G~~~~l~~~~~ 389 (702)
T 2p6r_A 379 GEAIIIVGKRD 389 (702)
T ss_dssp EEEEEECCGGG
T ss_pred ceEEEEecCcc
Confidence 89999998876
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-47 Score=403.24 Aligned_cols=330 Identities=18% Similarity=0.176 Sum_probs=260.2
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lv 87 (437)
.+|+.+++++.+...+...++..|+++|.++++.+..+++++++||||||||++|++|++..+. .+.+++|
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~---------~g~rvlv 232 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---------NKQRVIY 232 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH---------TTCEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh---------cCCeEEE
Confidence 3677788887777666665555799999999999999999999999999999999999998875 6778999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccc
Q 013727 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (437)
Q Consensus 88 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h 167 (437)
++|+++|+.|+++.+..++. .+..++|+.. ...+++|+|+||++|.+++.... ..+.++++|||||||
T Consensus 233 l~PtraLa~Q~~~~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~-~~l~~l~lVVIDEaH 300 (1108)
T 3l9o_A 233 TSPIKALSNQKYRELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVH 300 (1108)
T ss_dssp EESSHHHHHHHHHHHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCS-SHHHHEEEEEEETGG
T ss_pred EcCcHHHHHHHHHHHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCc-cccccCCEEEEhhhh
Confidence 99999999999999999764 5666778765 33568999999999999887754 347789999999999
Q ss_pred cccccccHHHHHHHHHhCCccceEEEEeecCchHH--HHHHHHhcCCCcEEEcccccccccCceEEEEE---------cc
Q 013727 168 RLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKV--KKLQRACLKNPVKIEAASKYSTVDTLKQQYRF---------VP 236 (437)
Q Consensus 168 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 236 (437)
++.+.++...+..++..++...|++++|||+++.. ..+.......+..+....... ..+...+.. ++
T Consensus 301 ~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~vd 378 (1108)
T 3l9o_A 301 YMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVD 378 (1108)
T ss_dssp GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEEE
T ss_pred hccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeeec
Confidence 99999999999999999999999999999988753 344444555554443332211 111111110 00
Q ss_pred C----------------------------------------------CChHHHHHHHHHhcCCCcEEEEecchHHHHHHH
Q 013727 237 A----------------------------------------------KYKDCYLVYILTEVSASSTMVFTRTCDATRLLA 270 (437)
Q Consensus 237 ~----------------------------------------------~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~ 270 (437)
. ......+...+......++||||+++..|+.++
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la 458 (1108)
T 3l9o_A 379 EKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELA 458 (1108)
T ss_dssp TTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHH
Confidence 0 011112333444456779999999999999999
Q ss_pred HHHHhcCCc---------------------------------------eEeccCCCCHHHHHHHHHHhhCCCceEEEEcC
Q 013727 271 LMLRNLGQR---------------------------------------AIPISGHMSQSKRLGALNKFKAGECNILICTD 311 (437)
Q Consensus 271 ~~l~~~~~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 311 (437)
..|...++. +..+||+|++.+|..++..|++|.++|||||+
T Consensus 459 ~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~ 538 (1108)
T 3l9o_A 459 LKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATE 538 (1108)
T ss_dssp HHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECc
Confidence 988653322 68899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCEEEEecCC--------CChhhHHHHhhhcccCC--CCceEEEEEccc
Q 013727 312 VASRGLDIPSVDMVINYDIP--------TNSKDYIHRVGRTARAG--RTGVAISLVNQY 360 (437)
Q Consensus 312 ~~~~Gid~~~~~~Vi~~~~p--------~s~~~~~Q~~GR~~R~g--~~g~~i~~~~~~ 360 (437)
++++|+|+|++++||+++.| .|+.+|+||+||+||.| ..|.|++++.+.
T Consensus 539 vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 539 TFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999987664 46778999999999999 578888888765
No 25
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3e-47 Score=380.61 Aligned_cols=331 Identities=21% Similarity=0.205 Sum_probs=199.8
Q ss_pred CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
++..+|||+|.++++.++.++++++.+|||||||++|++|++..+..... ..+.++||++|+++|+.|+.+.++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc----cCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 34458999999999999999999999999999999999999988765321 12678999999999999999999999
Q ss_pred hcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHH-HHHHHh
Q 013727 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSL-DEILNV 184 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~-~~i~~~ 184 (437)
+...++.+..++|+.........+..+++|+|+||++|.+.+.......+.++++||+||||++.+.+....+ ..++..
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred hcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 8877889999999886665555555568999999999999887755336889999999999999876543332 222222
Q ss_pred ----CCccceEEEEeecCch-----------HHHHHHHHhcCCCcEEEcccccc-----cccCceEEEEEcc--------
Q 013727 185 ----IPRMRQTYLFSATMTK-----------KVKKLQRACLKNPVKIEAASKYS-----TVDTLKQQYRFVP-------- 236 (437)
Q Consensus 185 ----~~~~~~~i~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------- 236 (437)
..+..+++++|||+.. .+..+...+... .+....... ........+....
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 236 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCS--EEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCe--EecchhcchHHHHhcCCCCceEEEEcCCCcCChHH
Confidence 1345789999999953 111222222111 011000000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 013727 237 -------------------------------------------------------------------------------- 236 (437)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (437)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (556)
T 4a2p_A 237 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 316 (556)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------CCChHHHHHHHHHh----cCCCcEEEE
Q 013727 237 -----------------------------------------------------AKYKDCYLVYILTE----VSASSTMVF 259 (437)
Q Consensus 237 -----------------------------------------------------~~~~~~~~~~~l~~----~~~~~~iVf 259 (437)
...+...+..++.. ..+.++|||
T Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF 396 (556)
T 4a2p_A 317 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 396 (556)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEE
Confidence 11233333444433 467899999
Q ss_pred ecchHHHHHHHHHHHhc------------CCceEeccCCCCHHHHHHHHHHhhC-CCceEEEEcCCCCCCCCCCCCCEEE
Q 013727 260 TRTCDATRLLALMLRNL------------GQRAIPISGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVI 326 (437)
Q Consensus 260 ~~s~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~Gid~~~~~~Vi 326 (437)
|+++..++.+++.|+.. |.....+||++++.+|..+++.|++ |+++|||||+++++|+|+|++++||
T Consensus 397 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI 476 (556)
T 4a2p_A 397 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 476 (556)
T ss_dssp ESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEE
T ss_pred EccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEE
Confidence 99999999999999875 4555667888999999999999999 9999999999999999999999999
Q ss_pred EecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHH
Q 013727 327 NYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEW 364 (437)
Q Consensus 327 ~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~ 364 (437)
+||+|+|+..|+||+|| ||. ..|.++.++...+.+.
T Consensus 477 ~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 477 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp EETCCSCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 99999999999999999 998 7899999998876543
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.8e-47 Score=379.10 Aligned_cols=331 Identities=22% Similarity=0.213 Sum_probs=228.0
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 109 (437)
+|+++|.++++.++.++++++.+|||||||++|++|++..+..... ..+.++||++|+++|+.|+.+.+++++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC----GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 6999999999999999999999999999999999999988875321 126789999999999999999999998888
Q ss_pred CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccc-cHHHHHHHHHhC---
Q 013727 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNVI--- 185 (437)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~-~~~~~~~i~~~~--- 185 (437)
++.+..++|+.....+...+..+++|+|+||++|.+.+.......+.++++||+||||++.+.+ +...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 8999999999876555455545689999999999998877553368889999999999998764 333333333332
Q ss_pred --CccceEEEEeecCchH-----------HHHHHHHhcCCCcEEEccccc-----ccccCceEEEEEcc-----------
Q 013727 186 --PRMRQTYLFSATMTKK-----------VKKLQRACLKNPVKIEAASKY-----STVDTLKQQYRFVP----------- 236 (437)
Q Consensus 186 --~~~~~~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~----------- 236 (437)
.+..+++++|||+... +..+.... .. ..+...... .........+..+.
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l-~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAAL-DA-SVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCII 237 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHT-TC-SEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhc-CC-eeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHH
Confidence 2446899999999542 11222211 11 111111100 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 013727 237 -------------------------------------------------------------------------------- 236 (437)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (437)
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (555)
T 3tbk_A 238 SQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIIS 317 (555)
T ss_dssp HHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred ---------------------------------------------------CCChHHHHHHHHHh----cCCCcEEEEec
Q 013727 237 ---------------------------------------------------AKYKDCYLVYILTE----VSASSTMVFTR 261 (437)
Q Consensus 237 ---------------------------------------------------~~~~~~~~~~~l~~----~~~~~~iVf~~ 261 (437)
...+...+..++.. ..+.++||||+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~ 397 (555)
T 3tbk_A 318 EDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVK 397 (555)
T ss_dssp HHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeC
Confidence 11233333334433 35689999999
Q ss_pred chHHHHHHHHHHHhcC------------CceEeccCCCCHHHHHHHHHHhhC-CCceEEEEcCCCCCCCCCCCCCEEEEe
Q 013727 262 TCDATRLLALMLRNLG------------QRAIPISGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVINY 328 (437)
Q Consensus 262 s~~~~~~l~~~l~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~Gid~~~~~~Vi~~ 328 (437)
++..++.+++.|+..+ .....+||+|++.+|..+++.|++ |+++|||||+++++|+|+|++++||+|
T Consensus 398 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~ 477 (555)
T 3tbk_A 398 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILY 477 (555)
T ss_dssp SHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEE
T ss_pred cHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEe
Confidence 9999999999999864 334455669999999999999999 999999999999999999999999999
Q ss_pred cCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHH
Q 013727 329 DIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (437)
Q Consensus 329 ~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l 368 (437)
|+|+|+..|+||+|| ||. ..|.++.++.+.+......+
T Consensus 478 d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 478 EYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999 998 88999999988776655444
No 27
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.1e-47 Score=400.09 Aligned_cols=336 Identities=22% Similarity=0.273 Sum_probs=265.1
Q ss_pred CccccCCCHHHH-----HHHH-hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 013727 9 TFKELGLRDELV-----EACE-NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (437)
Q Consensus 9 ~f~~~~l~~~~~-----~~l~-~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 82 (437)
.+..+++++.+. +.+. .+||. | ++|.++++.++.|+++++++|||||||+ |++|++..+.. .+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~ 99 (1054)
T 1gku_B 31 AASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KG 99 (1054)
T ss_dssp CCCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TS
T ss_pred cccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cC
Confidence 455566655432 4444 48998 9 9999999999999999999999999998 88888887754 56
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhcCCCc----EEEEEEcCCChHHH---HHHhCCCCcEEEECchHHHHHHhcCCCCCC
Q 013727 83 FFACVLSPTRELAIQISEQFEALGSGISL----RCAVLVGGVDMMQQ---TLALGKRPHIVVATPGRLMDHLTNTKGFSL 155 (437)
Q Consensus 83 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~----~~~~~~g~~~~~~~---~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~ 155 (437)
.++||++||++|+.|+.+.++.++...++ .+..++|+.....+ ...+.. ++|+|+||++|.+++.. +
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L 173 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----L 173 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----S
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----h
Confidence 78999999999999999999999988788 89999999877653 333444 99999999999886654 5
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCC-----------ccceEEEEeecCchHHHHHHHHhcCCCcEEEccccccc
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIP-----------RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST 224 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~-----------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (437)
+++++||+||||++++ +...+..++..++ ...|++++|||++.. ..+...++.++..+........
T Consensus 174 ~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~ 250 (1054)
T 1gku_B 174 GHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRIT 250 (1054)
T ss_dssp CCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEEC
T ss_pred ccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccC
Confidence 6899999999999988 6677788877763 457899999999887 4333333333333333333333
Q ss_pred ccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCc
Q 013727 225 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304 (437)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 304 (437)
...+.+.+. ...+...+..++... +.++||||++++.++.+++.|+.. +.+..+||++ ..+++.|++|+.
T Consensus 251 ~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~ 320 (1054)
T 1gku_B 251 VRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEI 320 (1054)
T ss_dssp CCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSC
T ss_pred cCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCC
Confidence 344554444 344455566666654 578999999999999999999988 9999999998 378899999999
Q ss_pred eEEEE----cCCCCCCCCCCCC-CEEEEecCC------------------------------------------------
Q 013727 305 NILIC----TDVASRGLDIPSV-DMVINYDIP------------------------------------------------ 331 (437)
Q Consensus 305 ~ilv~----T~~~~~Gid~~~~-~~Vi~~~~p------------------------------------------------ 331 (437)
+|||| |+++++|+|+|+| ++||++|.|
T Consensus 321 ~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1054)
T 1gku_B 321 DHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREIL 400 (1054)
T ss_dssp SEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHH
T ss_pred cEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 8999999999995 999999999
Q ss_pred -----------------------CChhhHHHHhhhcccCCCCc--eEEEEEccccHHHHHHHHHHhCC
Q 013727 332 -----------------------TNSKDYIHRVGRTARAGRTG--VAISLVNQYELEWYLQIEKLIGK 374 (437)
Q Consensus 332 -----------------------~s~~~~~Q~~GR~~R~g~~g--~~i~~~~~~~~~~~~~l~~~~~~ 374 (437)
.+..+|+||+||+||.|..| .+++++...+...+..+++.++.
T Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 401 KKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988776 48888888888888888888774
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.1e-46 Score=385.81 Aligned_cols=331 Identities=20% Similarity=0.203 Sum_probs=207.6
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|+..|+++|.++++.++.++++++.+|||||||++|++|++..+..... ..+.++||++|+++|+.|+.+.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999988875321 1267899999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHH-HHHHHH
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKS-LDEILN 183 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~-~~~i~~ 183 (437)
++...++.+..++|+.........+..+++|+|+||++|.+.+.......+.++++||+||||++........ +..++.
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred hcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 9887789999999998766655555567999999999999988765433688899999999999887543332 323333
Q ss_pred h----CCccceEEEEeecCch-----------HHHHHHHHhcCCCcEEEcccccc-----cccCceEEEEEcc-------
Q 013727 184 V----IPRMRQTYLFSATMTK-----------KVKKLQRACLKNPVKIEAASKYS-----TVDTLKQQYRFVP------- 236 (437)
Q Consensus 184 ~----~~~~~~~i~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~------- 236 (437)
. ..+..+++++|||+.. .+..++..+... .+....... ........+..+.
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~--~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 476 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS--EEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc--EEecccccHHHHHHhcCCCceEEEecCCCCCcHH
Confidence 2 1455789999999952 222222221111 011000000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 013727 237 -------------------------------------------------------------------------------- 236 (437)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (437)
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 556 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------CCChHHHHHHHHHh----cCCCcEEE
Q 013727 237 ------------------------------------------------------AKYKDCYLVYILTE----VSASSTMV 258 (437)
Q Consensus 237 ------------------------------------------------------~~~~~~~~~~~l~~----~~~~~~iV 258 (437)
...+...+..++.. ..+.++||
T Consensus 557 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLI 636 (797)
T 4a2q_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (797)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEE
T ss_pred hhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEE
Confidence 11123333444433 46689999
Q ss_pred EecchHHHHHHHHHHHhc------------CCceEeccCCCCHHHHHHHHHHhhC-CCceEEEEcCCCCCCCCCCCCCEE
Q 013727 259 FTRTCDATRLLALMLRNL------------GQRAIPISGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMV 325 (437)
Q Consensus 259 f~~s~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~Gid~~~~~~V 325 (437)
||+++..++.+++.|+.. |..+..+||++++.+|..+++.|++ |+++|||||+++++|+|+|++++|
T Consensus 637 F~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~V 716 (797)
T 4a2q_A 637 FAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV 716 (797)
T ss_dssp EESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEE
T ss_pred EECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEE
Confidence 999999999999999874 5566677899999999999999999 999999999999999999999999
Q ss_pred EEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHH
Q 013727 326 INYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELE 363 (437)
Q Consensus 326 i~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~ 363 (437)
|+||+|+|+..|+||+|| ||. +.|.++.++...+..
T Consensus 717 I~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 717 VLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp EEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred EEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999 998 889999999876654
No 29
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4e-46 Score=369.14 Aligned_cols=322 Identities=18% Similarity=0.212 Sum_probs=251.4
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|| .|+++|..+++.+++|+ ++.++||+|||++|.+|++...+ .+..++|++||++||.|.++++..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---------~g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---------TGKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHH
Confidence 5899 99999999999999998 99999999999999999985433 455799999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCC-----CCCCCCccEEEEccccccc-cc-----
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLL-ND----- 172 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~-----~~~~~~~~~vViDE~h~~~-~~----- 172 (437)
++..+++++.+++||.+...+... .+++|+|+||++| .+++..+- .+.++.+.++|+||||.|+ ++
T Consensus 147 l~~~lgl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 147 IFEFLGLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHHTTCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HHhhcCCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 998889999999999876554443 3689999999999 66665431 2467889999999999988 54
Q ss_pred ----------ccHHHHHHHHHhCC---------ccceEE-----------------EEeecCchHHHHHH-----HHhcC
Q 013727 173 ----------DFEKSLDEILNVIP---------RMRQTY-----------------LFSATMTKKVKKLQ-----RACLK 211 (437)
Q Consensus 173 ----------~~~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~~~~~~~-----~~~~~ 211 (437)
+|...+..++..++ ..+|++ +||||.+.....+. ..++.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 37788999999887 367777 89999875433332 11211
Q ss_pred -CCcEE------------------------------------Ecccccccc-----------------------------
Q 013727 212 -NPVKI------------------------------------EAASKYSTV----------------------------- 225 (437)
Q Consensus 212 -~~~~~------------------------------------~~~~~~~~~----------------------------- 225 (437)
+...+ .+.......
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 11000 000000000
Q ss_pred ---------------cCce---EEEEEccCCChHHHHHHHHHh--cCCCcEEEEecchHHHHHHHHHHHhcCCceEeccC
Q 013727 226 ---------------DTLK---QQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 285 (437)
Q Consensus 226 ---------------~~~~---~~~~~~~~~~~~~~~~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~ 285 (437)
+... ..+.+.+...|...+...+.. ..+.++||||+|++.++.++..|...|+++..+||
T Consensus 385 ~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg 464 (844)
T 1tf5_A 385 RNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNA 464 (844)
T ss_dssp HHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECS
T ss_pred HHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeC
Confidence 0000 112333444455566665553 35678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCC--------CCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEE
Q 013727 286 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIP--------SVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 357 (437)
Q Consensus 286 ~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~--------~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 357 (437)
++.+.+|..+...|+.| .|+|||+++++|+|++ ++.+||+++.|.|...|+||+||+||+|.+|.+++|+
T Consensus 465 ~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~v 542 (844)
T 1tf5_A 465 KNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 542 (844)
T ss_dssp SCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEe
Confidence 99888887666666665 7999999999999999 7889999999999999999999999999999999999
Q ss_pred ccccH
Q 013727 358 NQYEL 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
+..|.
T Consensus 543 s~eD~ 547 (844)
T 1tf5_A 543 SMEDE 547 (844)
T ss_dssp ETTSS
T ss_pred cHHHH
Confidence 87663
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-45 Score=380.27 Aligned_cols=321 Identities=19% Similarity=0.196 Sum_probs=254.4
Q ss_pred HHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 013727 23 CENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (437)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 102 (437)
...++|. |+++|.++++.+.+++++++++|||||||++|.++++..+. .+.+++|++|+++|+.|+++.+
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~---------~g~rvL~l~PtkaLa~Q~~~~l 149 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---------NKQRVIYTSPIKALSNQKYREL 149 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH---------TTCEEEEEESSHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc---------cCCeEEEECChHHHHHHHHHHH
Confidence 4567885 99999999999999999999999999999999998887774 5678999999999999999999
Q ss_pred HHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHH
Q 013727 103 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (437)
Q Consensus 103 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~ 182 (437)
..++. .+..++|+.... ..++|+|+||++|.+++.... ..+.++++|||||+|++.+.+++..+..++
T Consensus 150 ~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~-~~l~~l~lVViDEaH~l~d~~rg~~~e~il 217 (1010)
T 2xgj_A 150 LAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVHYMRDKERGVVWEETI 217 (1010)
T ss_dssp HHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTC-TTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCc-chhhcCCEEEEechhhhcccchhHHHHHHH
Confidence 98764 567778876532 358999999999998887644 467899999999999999999999999999
Q ss_pred HhCCccceEEEEeecCchHHH--HHHHHhcCCCcEEEcccccccccCceEEEEE---------ccC--------------
Q 013727 183 NVIPRMRQTYLFSATMTKKVK--KLQRACLKNPVKIEAASKYSTVDTLKQQYRF---------VPA-------------- 237 (437)
Q Consensus 183 ~~~~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-------------- 237 (437)
..++...|++++|||+++..+ .+.......+..+....... ..+.+.+.. ++.
T Consensus 218 ~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1010)
T 2xgj_A 218 ILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA 295 (1010)
T ss_dssp HHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHH
T ss_pred HhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHHHHH
Confidence 999999999999999987533 22222234444333222111 112221111 000
Q ss_pred --------------------------------CChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCc------
Q 013727 238 --------------------------------KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR------ 279 (437)
Q Consensus 238 --------------------------------~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~------ 279 (437)
......+...+......++||||+++..++.++..|...++.
T Consensus 296 ~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~ 375 (1010)
T 2xgj_A 296 SISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 375 (1010)
T ss_dssp TCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHH
T ss_pred HHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHH
Confidence 111122344444456679999999999999999998765432
Q ss_pred ---------------------------------eEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEE
Q 013727 280 ---------------------------------AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 326 (437)
Q Consensus 280 ---------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi 326 (437)
+..+||++++.+|..++..|++|.++|||||+++++|+|+|++++||
T Consensus 376 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI 455 (1010)
T 2xgj_A 376 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 455 (1010)
T ss_dssp HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEE
T ss_pred HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEE
Confidence 67899999999999999999999999999999999999999999999
Q ss_pred E----ecC----CCChhhHHHHhhhcccCCC--CceEEEEEccc-cHHHHHH
Q 013727 327 N----YDI----PTNSKDYIHRVGRTARAGR--TGVAISLVNQY-ELEWYLQ 367 (437)
Q Consensus 327 ~----~~~----p~s~~~~~Q~~GR~~R~g~--~g~~i~~~~~~-~~~~~~~ 367 (437)
+ ||. |.|+.+|+||+||+||.|. .|.|++++.+. +...+..
T Consensus 456 ~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 456 TSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp SCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHH
T ss_pred eCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHH
Confidence 9 998 8999999999999999996 49999999865 4444333
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-44 Score=354.73 Aligned_cols=322 Identities=24% Similarity=0.254 Sum_probs=246.3
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 109 (437)
+|+++|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++||++|+++|+.|+.+++.++....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 6999999999999999 99999999999999999998887652 56679999999999999999999987444
Q ss_pred CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCccc
Q 013727 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189 (437)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~ 189 (437)
...+..++|+......... ...++|+|+||++|...+.... +.+.++++||+||||++.+......+...+....+..
T Consensus 80 ~~~v~~~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~ 157 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGR-ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (494)
T ss_dssp GGGEEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTS-CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred hhheEEeeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCC-cchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCC
Confidence 4588888888776543322 2358999999999998877643 5688899999999999887544445555555555677
Q ss_pred eEEEEeecCchHHHH---HHHHhcCCCcEEEccccccc---ccCceEEEEEc----------------------------
Q 013727 190 QTYLFSATMTKKVKK---LQRACLKNPVKIEAASKYST---VDTLKQQYRFV---------------------------- 235 (437)
Q Consensus 190 ~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------------------------- 235 (437)
+++++|||+...... +................... .......+...
T Consensus 158 ~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
T 1wp9_A 158 LVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG 237 (494)
T ss_dssp CEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999754333 33322211111100000000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 013727 236 -------------------------------------------------------------------------------- 235 (437)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (437)
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (494)
T 1wp9_A 238 LLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASK 317 (494)
T ss_dssp SSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhh
Confidence
Q ss_pred ----------------------cCCChHHHHHHHHHh----cCCCcEEEEecchHHHHHHHHHHHhcCCceEeccC----
Q 013727 236 ----------------------PAKYKDCYLVYILTE----VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG---- 285 (437)
Q Consensus 236 ----------------------~~~~~~~~~~~~l~~----~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~---- 285 (437)
....+...+..++.. ..+.++||||+++..++.+++.|+..++.+..+||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~ 397 (494)
T 1wp9_A 318 EIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASK 397 (494)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccc
Confidence 112233444555554 46889999999999999999999999999999999
Q ss_pred ----CCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEcccc
Q 013727 286 ----HMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (437)
Q Consensus 286 ----~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~ 361 (437)
+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+ |.++.++.+.+
T Consensus 398 ~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 398 ENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp -------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred cccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 99999998876
Q ss_pred HH
Q 013727 362 LE 363 (437)
Q Consensus 362 ~~ 363 (437)
.+
T Consensus 477 ~e 478 (494)
T 1wp9_A 477 RD 478 (494)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=4.6e-45 Score=380.67 Aligned_cols=332 Identities=20% Similarity=0.200 Sum_probs=206.0
Q ss_pred CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
.|+..|+++|.++++.++.|+++++.+|||||||++|++|++..+..... ..+.++||++|+++|+.|+.+.++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~----~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS----SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999887654311 12677999999999999999999999
Q ss_pred hcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccccc-HHHHHHHHHh
Q 013727 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDF-EKSLDEILNV 184 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~-~~~~~~i~~~ 184 (437)
+...++.+..++|+.....+...+..+++|+|+||++|.+.+.......+.++++||+||||++...+. ...+..++..
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 887789999999998655444444446899999999999988875533678899999999999887543 3333333332
Q ss_pred ----CCccceEEEEeecCch-----------HHHHHHHHhc------------------CCCcEEEcccccccccC----
Q 013727 185 ----IPRMRQTYLFSATMTK-----------KVKKLQRACL------------------KNPVKIEAASKYSTVDT---- 227 (437)
Q Consensus 185 ----~~~~~~~i~~SAT~~~-----------~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~---- 227 (437)
..+..+++++|||+.. .+..++..+. ..|..............
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 1455789999999952 1222222111 11111110000000000
Q ss_pred --------------------c--eEEEEEc--------------------------------------------------
Q 013727 228 --------------------L--KQQYRFV-------------------------------------------------- 235 (437)
Q Consensus 228 --------------------~--~~~~~~~-------------------------------------------------- 235 (437)
+ .......
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0000000
Q ss_pred --------------------------------------------------cCCChHHHHHHHHHh----cCCCcEEEEec
Q 013727 236 --------------------------------------------------PAKYKDCYLVYILTE----VSASSTMVFTR 261 (437)
Q Consensus 236 --------------------------------------------------~~~~~~~~~~~~l~~----~~~~~~iVf~~ 261 (437)
....+...+..++.. ..+.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 011122333344443 35689999999
Q ss_pred chHHHHHHHHHHHhc------------CCceEeccCCCCHHHHHHHHHHhhC-CCceEEEEcCCCCCCCCCCCCCEEEEe
Q 013727 262 TCDATRLLALMLRNL------------GQRAIPISGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVINY 328 (437)
Q Consensus 262 s~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~Gid~~~~~~Vi~~ 328 (437)
++..++.+++.|... |.....+||+|++.+|..+++.|++ |+++|||||+++++|+|+|++++||+|
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEe
Confidence 999999999999986 5556667899999999999999999 999999999999999999999999999
Q ss_pred cCCCChhhHHHHhhhcccCCCCceEEEEEccccHH
Q 013727 329 DIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELE 363 (437)
Q Consensus 329 ~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~ 363 (437)
|+|+|+..|+||+|| ||. ..|.++.++...+.+
T Consensus 720 D~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp SCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999999 998 789999998876544
No 33
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.1e-44 Score=357.84 Aligned_cols=322 Identities=18% Similarity=0.181 Sum_probs=227.5
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|+ .|+++|..+++.+++|+ ++.++||||||++|++|++.... .+..++|++||++||.|+++.+..
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---------~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---------TSSCCEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---------cCCcEEEEcCCHHHHHHHHHHHHH
Confidence 3687 79999999999999998 99999999999999999986543 455799999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCC-----CCCCCCccEEEEccccccc-cc-----
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLL-ND----- 172 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~-----~~~~~~~~~vViDE~h~~~-~~----- 172 (437)
++..+++++.+++||.+...... ..+++|+|+||++| .+++..+- .+.++.+.++|+||||+|+ +.
T Consensus 138 l~~~lgl~v~~i~GG~~~~~r~~--~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpL 215 (853)
T 2fsf_A 138 LFEFLGLTVGINLPGMPAPAKRE--AYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPL 215 (853)
T ss_dssp HHHHTTCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEE
T ss_pred HHHhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccc
Confidence 99989999999999988654333 33689999999999 78877542 1457889999999999998 43
Q ss_pred ----------ccHHHHHHHHHhCCc--------------------cceEE------------------------EEeecC
Q 013727 173 ----------DFEKSLDEILNVIPR--------------------MRQTY------------------------LFSATM 198 (437)
Q Consensus 173 ----------~~~~~~~~i~~~~~~--------------------~~~~i------------------------~~SAT~ 198 (437)
+|...+..++..++. .+|++ ++|||.
T Consensus 216 IiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~ 295 (853)
T 2fsf_A 216 IISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPAN 295 (853)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred cccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCccc
Confidence 356677788777764 44543 889997
Q ss_pred chHHHHHH-----HHhcC--------C-------------------------C----cEEEcccccccccCce-------
Q 013727 199 TKKVKKLQ-----RACLK--------N-------------------------P----VKIEAASKYSTVDTLK------- 229 (437)
Q Consensus 199 ~~~~~~~~-----~~~~~--------~-------------------------~----~~~~~~~~~~~~~~~~------- 229 (437)
+.....+. ..++. + + ..+.+.........+.
T Consensus 296 ~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~ 375 (853)
T 2fsf_A 296 IMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRL 375 (853)
T ss_dssp -------------------------------------------------------------CCCCCEEEEEEEHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhh
Confidence 54222211 00000 0 0 0111111100000000
Q ss_pred ----------------------------------------EEEEEccCCChHHHHHHHHHh--cCCCcEEEEecchHHHH
Q 013727 230 ----------------------------------------QQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATR 267 (437)
Q Consensus 230 ----------------------------------------~~~~~~~~~~~~~~~~~~l~~--~~~~~~iVf~~s~~~~~ 267 (437)
..+.+.+...|...+...+.. ..+.++||||+|++.++
T Consensus 376 Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se 455 (853)
T 2fsf_A 376 YEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSE 455 (853)
T ss_dssp SSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHH
T ss_pred hhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 012333344455566666644 35788999999999999
Q ss_pred HHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCC-------------------------
Q 013727 268 LLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV------------------------- 322 (437)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~------------------------- 322 (437)
.++..|+..|+++.++|+++.+.++..+...|+.| .|+|||+++++|+|++..
T Consensus 456 ~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~ 533 (853)
T 2fsf_A 456 LVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 533 (853)
T ss_dssp HHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHh
Confidence 99999999999999999999888888888889988 699999999999999873
Q ss_pred ------------CEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccH
Q 013727 323 ------------DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (437)
Q Consensus 323 ------------~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 362 (437)
.+||+++.|.|...|.||+||+||.|.+|.+++|++..|.
T Consensus 534 ~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 534 QVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999988763
No 34
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.5e-45 Score=374.08 Aligned_cols=315 Identities=22% Similarity=0.261 Sum_probs=219.6
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH-HHHHHHhhcC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI-SEQFEALGSG 108 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~-~~~~~~~~~~ 108 (437)
+|+++|.++++.++.++++++.+|||+|||++|++|++..+...... ..+.++||++|+++|+.|+ .+.+++++..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~---~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH---TCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc---CCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 69999999999999999999999999999999999999888765321 1336799999999999999 9999998865
Q ss_pred CCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhc-----CCCCCCCCccEEEEcccccccccc-cHHHHHHHH
Q 013727 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTN-----TKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEIL 182 (437)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~-----~~~~~~~~~~~vViDE~h~~~~~~-~~~~~~~i~ 182 (437)
++.+..++|+.........+...++|+|+||++|.+.+.. ...+.+.++++||+||||++.... +...+..++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 4788888888765544444445789999999999987742 223567889999999999886633 222222222
Q ss_pred Hh----C---------CccceEEEEeecCchH-----------HHHHHHHhcCCCcEEEccc-c--cccccCceEEEEEc
Q 013727 183 NV----I---------PRMRQTYLFSATMTKK-----------VKKLQRACLKNPVKIEAAS-K--YSTVDTLKQQYRFV 235 (437)
Q Consensus 183 ~~----~---------~~~~~~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~ 235 (437)
.. . .+..+++++|||+... +..+...+........... . ..........+..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 21 1 1556899999999862 2222222211000000000 0 00000000001000
Q ss_pred c-------------------------------------------------------------------------------
Q 013727 236 P------------------------------------------------------------------------------- 236 (437)
Q Consensus 236 ~------------------------------------------------------------------------------- 236 (437)
.
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred --------------------------------------------------------CCChH----HHHHHHHHhcC-CCc
Q 013727 237 --------------------------------------------------------AKYKD----CYLVYILTEVS-ASS 255 (437)
Q Consensus 237 --------------------------------------------------------~~~~~----~~~~~~l~~~~-~~~ 255 (437)
...+. ..+...+.... +.+
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 00011 11111122223 789
Q ss_pred EEEEecchHHHHHHHHHHHhc------CCceEeccCC--------CCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCC
Q 013727 256 TMVFTRTCDATRLLALMLRNL------GQRAIPISGH--------MSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (437)
Q Consensus 256 ~iVf~~s~~~~~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~ 321 (437)
+||||+++..++.+++.|+.. |+.+..+||+ |++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred CCEEEEecCCCChhhHHHHhhhcccCC
Q 013727 322 VDMVINYDIPTNSKDYIHRVGRTARAG 348 (437)
Q Consensus 322 ~~~Vi~~~~p~s~~~~~Q~~GR~~R~g 348 (437)
+++||+||+|+|+..|+||+||+||.|
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 999999999999999999999976654
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.3e-43 Score=369.46 Aligned_cols=309 Identities=19% Similarity=0.212 Sum_probs=243.3
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.++| +|+++|.++++.+++++++++.+|||||||++|++++...+. .+.+++|++|+++|+.|+++.+.+
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~---------~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR---------NMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---------TTCEEEEEESCGGGHHHHHHHHHT
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 5688 499999999999999999999999999999999998877654 667899999999999999999998
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHh
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~ 184 (437)
+.. ++.+..++|+... ...++|+|+||++|.+.+.... ..+.++++||+||||++.+.++...+..++..
T Consensus 105 ~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~ 174 (997)
T 4a4z_A 105 TFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGA-DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM 174 (997)
T ss_dssp TC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTC-SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH
T ss_pred HcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCc-hhhcCCCEEEEECcccccccchHHHHHHHHHh
Confidence 653 4678888887643 2458999999999998887654 35788999999999999999999999999999
Q ss_pred CCccceEEEEeecCchHHHHHHHHhc---CCCcEEEcccccccccCceEEE-----------------------------
Q 013727 185 IPRMRQTYLFSATMTKKVKKLQRACL---KNPVKIEAASKYSTVDTLKQQY----------------------------- 232 (437)
Q Consensus 185 ~~~~~~~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------------------------- 232 (437)
++...|++++|||+++.. .+..++. ..+..+....... ..+.+.+
T Consensus 175 l~~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~--~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (997)
T 4a4z_A 175 LPQHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRP--VPLEINIWAKKELIPVINQNSEFLEANFRKHKEILN 251 (997)
T ss_dssp SCTTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCS--SCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC
T ss_pred cccCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCC--ccceEEEecCCcchhcccchhhhhHHHHHHHHHHhh
Confidence 999999999999998654 3444332 1222111111000 0000000
Q ss_pred ----------------------------------------------------------------EEccCCChHHHHHHHH
Q 013727 233 ----------------------------------------------------------------RFVPAKYKDCYLVYIL 248 (437)
Q Consensus 233 ----------------------------------------------------------------~~~~~~~~~~~~~~~l 248 (437)
...+.......+...+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l 331 (997)
T 4a4z_A 252 GESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYL 331 (997)
T ss_dssp -----------------------------------------------------------------CCCCTTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 0001222344556666
Q ss_pred HhcCCCcEEEEecchHHHHHHHHHHHhcCC---------------------------------------ceEeccCCCCH
Q 013727 249 TEVSASSTMVFTRTCDATRLLALMLRNLGQ---------------------------------------RAIPISGHMSQ 289 (437)
Q Consensus 249 ~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~ 289 (437)
......++||||++++.++.++..|...++ .+..+||++++
T Consensus 332 ~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~ 411 (997)
T 4a4z_A 332 RKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLP 411 (997)
T ss_dssp HHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCH
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCH
Confidence 677778999999999999999999977555 47899999999
Q ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC---------ChhhHHHHhhhcccCC--CCceEEEEE
Q 013727 290 SKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT---------NSKDYIHRVGRTARAG--RTGVAISLV 357 (437)
Q Consensus 290 ~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~---------s~~~~~Q~~GR~~R~g--~~g~~i~~~ 357 (437)
.+|..++..|++|..+|||||+++++|+|+|+ ..||+++.|. |+.+|+||+||+||.| ..|.+++++
T Consensus 412 ~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 412 IVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred HHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 99999999999999999999999999999999 5555555544 9999999999999998 457777777
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.1e-44 Score=362.76 Aligned_cols=326 Identities=18% Similarity=0.200 Sum_probs=241.5
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHhhhcC------CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 013727 17 DELVEACENVGWKTPSKIQAEAIPHALEG------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (437)
Q Consensus 17 ~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P 90 (437)
+.+.+.++.+|| .||++|.++++.+.++ .++++++|||||||++|++|++..+. .+.+++|++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~---------~g~qvlvlaP 425 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE---------AGFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH---------HTSCEEEECS
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeC
Confidence 445566688999 8999999999999875 58999999999999999999998875 4567999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHH---HhC-CCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccc
Q 013727 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL---ALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (437)
Q Consensus 91 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~ 166 (437)
|++|+.|+++.+.++....++++..++|+........ .+. ..++|+|+||+.+.+ .+.+.++++||+||+
T Consensus 426 tr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 426 TSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQ 499 (780)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESC
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEeccc
Confidence 9999999999999998888899999999987655332 232 358999999997744 246788999999999
Q ss_pred ccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHH
Q 013727 167 DRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246 (437)
Q Consensus 167 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (437)
|++.... ...+.......+++++|||+.+...... ...+...............+. ....+... ...+..
T Consensus 500 Hr~g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~--~~~~~~~~-~~~l~~ 569 (780)
T 1gm5_A 500 HRFGVKQ-----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQ--TMLVPMDR-VNEVYE 569 (780)
T ss_dssp CCC----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCE--ECCCCSST-HHHHHH
T ss_pred chhhHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceE--EEEeccch-HHHHHH
Confidence 9863321 1112222346789999999877543333 233221111111000111121 11222222 333333
Q ss_pred HHH-h-cCCCcEEEEecchH--------HHHHHHHHHHh---cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCC
Q 013727 247 ILT-E-VSASSTMVFTRTCD--------ATRLLALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA 313 (437)
Q Consensus 247 ~l~-~-~~~~~~iVf~~s~~--------~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 313 (437)
.+. . ..+.+++|||++++ .++.+++.|.. .+..+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 570 ~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vi 649 (780)
T 1gm5_A 570 FVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVI 649 (780)
T ss_dssp HHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCC
T ss_pred HHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 333 2 25678999999764 46778888877 36789999999999999999999999999999999999
Q ss_pred CCCCCCCCCCEEEEecCCC-ChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHH
Q 013727 314 SRGLDIPSVDMVINYDIPT-NSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (437)
Q Consensus 314 ~~Gid~~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l 368 (437)
++|+|+|++++||+++.|. +...|.||+||+||.|..|.|++++.+.+......+
T Consensus 650 e~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 650 EVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp CSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred CccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 9999999999999999995 788999999999999999999999885444433333
No 37
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=7.5e-44 Score=352.18 Aligned_cols=323 Identities=16% Similarity=0.182 Sum_probs=252.7
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|+ .|+++|..+++.+++|+ ++.++||+|||++|.+|++...+ .+..++|++||++||.|.++.+..
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---------~g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---------AGNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---------TTSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---------hCCCeEEEeCCHHHHHHHHHHHHH
Confidence 4799 89999999999999998 99999999999999999975544 445699999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCC-----CCCCCCccEEEEccccccc-c------
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLL-N------ 171 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~-----~~~~~~~~~vViDE~h~~~-~------ 171 (437)
++..+++++.+++||.+....... .+++|+|+||++| .+++..+- .+.++.+.++|+||||.|+ +
T Consensus 175 l~~~lGLsv~~i~gg~~~~~r~~~--y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 175 VHRFLGLQVGVILATMTPDERRVA--YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHHTTCCEEECCTTCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred HHhhcCCeEEEEeCCCCHHHHHHh--cCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 999899999999999876544333 3589999999999 77776542 2467889999999999998 3
Q ss_pred ---------cccHHHHHHHHHhCC---------ccceEE-----------------EEeecCchHHHHHHH-----HhcC
Q 013727 172 ---------DDFEKSLDEILNVIP---------RMRQTY-----------------LFSATMTKKVKKLQR-----ACLK 211 (437)
Q Consensus 172 ---------~~~~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~~~~~~~~-----~~~~ 211 (437)
.+|...+..++..++ +.+|++ ++|||.+.....+.. .++.
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 257888999999998 678888 899998754333221 1221
Q ss_pred -C-------CcEEEccc-----------------------------ccccccCce-------------------------
Q 013727 212 -N-------PVKIEAAS-----------------------------KYSTVDTLK------------------------- 229 (437)
Q Consensus 212 -~-------~~~~~~~~-----------------------------~~~~~~~~~------------------------- 229 (437)
+ +..+.+.. .......+.
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 1 11111110 000000000
Q ss_pred ----------------------EEEEEccCCChHHHHHHHHHh--cCCCcEEEEecchHHHHHHHHHHHhcCCceEeccC
Q 013727 230 ----------------------QQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 285 (437)
Q Consensus 230 ----------------------~~~~~~~~~~~~~~~~~~l~~--~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~ 285 (437)
..+.+.+...|...+...+.. ..+.++||||+|++.++.++..|+..|+++.++|+
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLna 492 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNA 492 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECS
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecC
Confidence 011223333345555555543 35678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCC-------------------------------------------
Q 013727 286 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV------------------------------------------- 322 (437)
Q Consensus 286 ~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~------------------------------------------- 322 (437)
+....++..+...|+.| .|+|||+++++|+|++..
T Consensus 493 k~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (922)
T 1nkt_A 493 KYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKE 570 (922)
T ss_dssp SCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHh
Confidence 98888877777888887 799999999999999975
Q ss_pred ---------CEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHH
Q 013727 323 ---------DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELE 363 (437)
Q Consensus 323 ---------~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~ 363 (437)
.+||+++.|.|...|.|++||+||.|.+|.+++|++..|..
T Consensus 571 ~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 571 AKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp HHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred hhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 49999999999999999999999999999999999887653
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.8e-43 Score=378.05 Aligned_cols=349 Identities=16% Similarity=0.186 Sum_probs=263.6
Q ss_pred ccCccccC---CCHHHHHHHHhCCCCCChHHHHHHHHhhhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 013727 7 VKTFKELG---LRDELVEACENVGWKTPSKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (437)
Q Consensus 7 ~~~f~~~~---l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 82 (437)
..++..++ |.....+.+...+|..++|+|.++++.++. +++++++||||||||++|.+|++..+.+. .+
T Consensus 900 lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-------~~ 972 (1724)
T 4f92_B 900 LLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-------SE 972 (1724)
T ss_dssp CCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-------TT
T ss_pred cccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-------CC
Confidence 34444444 446778888888999999999999999976 47899999999999999999999998764 45
Q ss_pred eEEEEEcCcHHHHHHHHHHHHH-hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCC-CCCCccE
Q 013727 83 FFACVLSPTRELAIQISEQFEA-LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF-SLGTLKY 160 (437)
Q Consensus 83 ~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~-~~~~~~~ 160 (437)
.+++|++|+++|+.|.++.+.+ |+...++++..++|+........ .+++|+||||+++..++.+.... .++++++
T Consensus 973 ~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~---~~~~IiV~TPEkld~llr~~~~~~~l~~v~l 1049 (1724)
T 4f92_B 973 GRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLL---GKGNIIISTPEKWDILSRRWKQRKNVQNINL 1049 (1724)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHH---HHCSEEEECHHHHHHHHTTTTTCHHHHSCSE
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhc---CCCCEEEECHHHHHHHHhCcccccccceeeE
Confidence 6799999999999999999865 66667899999998865443322 34799999999997766553322 3678999
Q ss_pred EEEcccccccccccHHHHHHHHH-------hCCccceEEEEeecCchHHHHHHHHhcCCCcEE-EcccccccccCceEEE
Q 013727 161 LVLDEADRLLNDDFEKSLDEILN-------VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI-EAASKYSTVDTLKQQY 232 (437)
Q Consensus 161 vViDE~h~~~~~~~~~~~~~i~~-------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 232 (437)
||+||+|.+.+ ..+..++.++. ..+...|++++|||+++. ..++.+....+..+ ..... ..+..+...+
T Consensus 1050 vViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i 1126 (1724)
T 4f92_B 1050 FVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPN-VRPVPLELHI 1126 (1724)
T ss_dssp EEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGG-GCSSCEEEEE
T ss_pred EEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCC-CCCCCeEEEE
Confidence 99999997765 46665555543 345678999999999864 56777665443322 23322 2223344444
Q ss_pred EEccCCChHHH--------HHHHHHhcCCCcEEEEecchHHHHHHHHHHHhc----------------------------
Q 013727 233 RFVPAKYKDCY--------LVYILTEVSASSTMVFTRTCDATRLLALMLRNL---------------------------- 276 (437)
Q Consensus 233 ~~~~~~~~~~~--------~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~---------------------------- 276 (437)
...+....... ...+.....++++||||+|+..++.++..|...
T Consensus 1127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~ 1206 (1724)
T 4f92_B 1127 QGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDS 1206 (1724)
T ss_dssp EEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCH
T ss_pred EeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccH
Confidence 33333332211 122233446789999999999998887766421
Q ss_pred ------CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEE----e------cCCCChhhHHHH
Q 013727 277 ------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----Y------DIPTNSKDYIHR 340 (437)
Q Consensus 277 ------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~----~------~~p~s~~~~~Q~ 340 (437)
...++.+|++|++.+|..+++.|++|.++|||||+++++|+|+|...+||. | ..|.++.+|+|+
T Consensus 1207 ~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm 1286 (1724)
T 4f92_B 1207 TLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQM 1286 (1724)
T ss_dssp HHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHH
T ss_pred HHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHh
Confidence 234788999999999999999999999999999999999999999888883 2 236789999999
Q ss_pred hhhcccCCC--CceEEEEEccccHHHHHHH
Q 013727 341 VGRTARAGR--TGVAISLVNQYELEWYLQI 368 (437)
Q Consensus 341 ~GR~~R~g~--~g~~i~~~~~~~~~~~~~l 368 (437)
+|||||.|. .|.+++++.+.+...+..+
T Consensus 1287 ~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1287 VGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp HTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred hccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 999999996 5999999988887765543
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.8e-42 Score=364.44 Aligned_cols=323 Identities=19% Similarity=0.190 Sum_probs=250.0
Q ss_pred ccCCCHHHHHHH-HhCCCCCChHHHHHHHHhhhc----CC--cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 013727 12 ELGLRDELVEAC-ENVGWKTPSKIQAEAIPHALE----GK--DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (437)
Q Consensus 12 ~~~l~~~~~~~l-~~~g~~~~~~~Q~~~~~~~~~----~~--~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (437)
.++.++...+.+ ..+||. +|++|.++++.++. ++ ++++++|||+|||++++.+++..+. .+.+
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---------~g~~ 654 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---------NHKQ 654 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---------TTCE
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---------hCCe
Confidence 345666666665 468995 79999999999986 55 8999999999999999888877654 5668
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHH---HHhC-CCCcEEEECchHHHHHHhcCCCCCCCCccE
Q 013727 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT---LALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKY 160 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 160 (437)
++|++||++|+.|+++.+.++....++.+..+++........ ..+. ..++|+|+||+.|. . .+.+.++++
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~--~~~~~~l~l 728 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S--DVKFKDLGL 728 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S--CCCCSSEEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----C--Cccccccce
Confidence 999999999999999999988877788888888876654432 2232 35899999997652 2 246788999
Q ss_pred EEEcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCCh
Q 013727 161 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK 240 (437)
Q Consensus 161 vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (437)
||+||+|++. .....++..++...+++++|||+.+.........+.++..+.... .....+...+. ....
T Consensus 729 vIiDEaH~~g-----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~--~~r~~i~~~~~---~~~~ 798 (1151)
T 2eyq_A 729 LIVDEEHRFG-----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP--ARRLAVKTFVR---EYDS 798 (1151)
T ss_dssp EEEESGGGSC-----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC--CBCBCEEEEEE---ECCH
T ss_pred EEEechHhcC-----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC--CCccccEEEEe---cCCH
Confidence 9999999853 233444555556788999999998776655554444433222111 11112222222 1222
Q ss_pred HHHHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHhc--CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCC
Q 013727 241 DCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGL 317 (437)
Q Consensus 241 ~~~~~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gi 317 (437)
......++... .+++++|||++++.++.+++.|+.. +..+..+||+|++.+|.+++..|++|+.+|||||+++++|+
T Consensus 799 ~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 799 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 23333333332 5789999999999999999999987 78899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecC-CCChhhHHHHhhhcccCCCCceEEEEEccc
Q 013727 318 DIPSVDMVINYDI-PTNSKDYIHRVGRTARAGRTGVAISLVNQY 360 (437)
Q Consensus 318 d~~~~~~Vi~~~~-p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~ 360 (437)
|+|++++||+++. +++...|+||+||+||.|+.|.|++++.+.
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999999988 579999999999999999999999998764
No 40
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.4e-43 Score=349.80 Aligned_cols=309 Identities=14% Similarity=0.138 Sum_probs=232.0
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 109 (437)
+|+++|.++++.++.++++++++|||+|||++++.++...+.. ...++||++|+++|+.|+.+.+++++...
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 7999999999999999999999999999999999888877653 34589999999999999999999987666
Q ss_pred CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCccc
Q 013727 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189 (437)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~ 189 (437)
++.+..++++.....+ .....+|+|+||+.|... ....+.++++||+||||++.. ..+..++..++...
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~ 253 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCC
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCc
Confidence 6788888888665443 445689999999976432 223567899999999998765 45667777787788
Q ss_pred eEEEEeecCchHHHHHH-HHhcCCCcEEEcccccc------cccCceEEEEEcc---------CC------------ChH
Q 013727 190 QTYLFSATMTKKVKKLQ-RACLKNPVKIEAASKYS------TVDTLKQQYRFVP---------AK------------YKD 241 (437)
Q Consensus 190 ~~i~~SAT~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---------~~------------~~~ 241 (437)
+++++|||++....... ...+..+..+....... ....+.......+ .. .+.
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRN 333 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHH
T ss_pred EEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHH
Confidence 99999999976542211 11122222211111100 0000111111111 01 112
Q ss_pred HHHHHHHHhc---CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEc-CCCCCCC
Q 013727 242 CYLVYILTEV---SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICT-DVASRGL 317 (437)
Q Consensus 242 ~~~~~~l~~~---~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T-~~~~~Gi 317 (437)
..+..++... .+.++||||+ .+.++.+++.|+..+..+..+||+++..+|..+++.|++|+.+||||| +++++|+
T Consensus 334 ~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~Gi 412 (510)
T 2oca_A 334 KWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGI 412 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccc
Confidence 2233333333 3455666666 888999999999998899999999999999999999999999999999 9999999
Q ss_pred CCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEc
Q 013727 318 DIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVN 358 (437)
Q Consensus 318 d~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~ 358 (437)
|+|++++||+++.|+++..|+|++||+||.|..+.++.+++
T Consensus 413 Dip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 413 SVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999999998775555544
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=9.5e-44 Score=353.15 Aligned_cols=317 Identities=16% Similarity=0.134 Sum_probs=234.7
Q ss_pred ccc-cCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 013727 10 FKE-LGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL 88 (437)
Q Consensus 10 f~~-~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl 88 (437)
|.. +++++.+.++|... ...++|+|+.+++.+++++++++.+|||||||++|++|++..+.. .+.++||+
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl 221 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLIL 221 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEE
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEE
Confidence 444 66777777666553 467899988899999999999999999999999999999988865 45689999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccc
Q 013727 89 SPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR 168 (437)
Q Consensus 89 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~ 168 (437)
+||++|+.|+.+.++. ..+. ..+.... .....+..+.++|.+.+...+.... .+.++++||+||||+
T Consensus 222 ~PtreLa~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~~--~l~~~~~iViDEah~ 288 (618)
T 2whx_A 222 APTRVVAAEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSST--RVPNYNLIVMDEAHF 288 (618)
T ss_dssp ESSHHHHHHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHCS--SCCCCSEEEEESTTC
T ss_pred cChHHHHHHHHHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhccc--cccCCeEEEEECCCC
Confidence 9999999999988763 2222 1111100 0111234577888888877666543 588899999999998
Q ss_pred ccccccHHHHHHHHHhCC-ccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHH
Q 013727 169 LLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247 (437)
Q Consensus 169 ~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (437)
+ +.++...+..+...++ ...|+++||||++..+..+.. .++..+...... +...... +...
T Consensus 289 ~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-------------~~~~~~~-ll~~ 350 (618)
T 2whx_A 289 T-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-------------PERSWNT-GFDW 350 (618)
T ss_dssp C-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-------------CSSCCSS-SCHH
T ss_pred C-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC-------------CHHHHHH-HHHH
Confidence 7 7677777777777765 578999999999876432211 122222222111 1111111 1122
Q ss_pred HHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEE--
Q 013727 248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV-- 325 (437)
Q Consensus 248 l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~V-- 325 (437)
+.. ..+++||||++++.++.+++.|+..+..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 351 l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId 424 (618)
T 2whx_A 351 ITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVID 424 (618)
T ss_dssp HHH-CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEE
T ss_pred HHh-CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEE
Confidence 222 36789999999999999999999999999999984 688899999999999999999999999997 8887
Q ss_pred ------------------EEecCCCChhhHHHHhhhcccCCC-CceEEEEEc---cccHHHHHHHHHHh
Q 013727 326 ------------------INYDIPTNSKDYIHRVGRTARAGR-TGVAISLVN---QYELEWYLQIEKLI 372 (437)
Q Consensus 326 ------------------i~~~~p~s~~~~~Q~~GR~~R~g~-~g~~i~~~~---~~~~~~~~~l~~~~ 372 (437)
|+++.|.|.++|+||+||+||.|. .|.+++++. +.+...+..+++.+
T Consensus 425 ~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 425 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred CcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 778889999999999999999975 899999997 77777777777654
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.7e-42 Score=372.35 Aligned_cols=336 Identities=20% Similarity=0.265 Sum_probs=252.8
Q ss_pred CCCCChHHHHHHHHhhhc-CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhc--CCCCCeEEEEEcCcHHHHHHHHHHHH
Q 013727 27 GWKTPSKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQ--RTVPAFFACVLSPTRELAIQISEQFE 103 (437)
Q Consensus 27 g~~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~--~~~~~~~~lvl~P~~~L~~q~~~~~~ 103 (437)
||..++++|.++++.++. +++++++||||||||+++.++++..+.+..... ....+.++||++|+++|+.|+.+.|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999998875 689999999999999999999999987643221 12257789999999999999999999
Q ss_pred HhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCC-CCCCCccEEEEcccccccccccHHHHHHHH
Q 013727 104 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (437)
Q Consensus 104 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~-~~~~~~~~vViDE~h~~~~~~~~~~~~~i~ 182 (437)
+.....++.+..++|+.....+. ..+++|+||||+++..++.+... -.++++++||+||+|.+.+ +.+..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 98888899999999987653321 23589999999998554443221 1367899999999996654 6777666555
Q ss_pred H-------hCCccceEEEEeecCchHHHHHHHHhcCCCc--EEEcccccccccCceEEEEEccCCChHH-------HHHH
Q 013727 183 N-------VIPRMRQTYLFSATMTKKVKKLQRACLKNPV--KIEAASKYSTVDTLKQQYRFVPAKYKDC-------YLVY 246 (437)
Q Consensus 183 ~-------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 246 (437)
. ..+...|+|++|||+++ .+.++.+....+. ........ .+..+.+.+..++...... .+..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~-RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSF-RPVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGG-CSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCC-ccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 4 34567899999999986 4566665543321 12222222 2233444444444333211 1111
Q ss_pred HH-HhcCCCcEEEEecchHHHHHHHHHHHhc-------------------------------------CCceEeccCCCC
Q 013727 247 IL-TEVSASSTMVFTRTCDATRLLALMLRNL-------------------------------------GQRAIPISGHMS 288 (437)
Q Consensus 247 ~l-~~~~~~~~iVf~~s~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~ 288 (437)
.+ ....++++||||+|++.|+.++..|.+. ...++.+||+|+
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 22 2235678999999999998888877531 234778999999
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEE----ec------CCCChhhHHHHhhhcccCCC--CceEEEE
Q 013727 289 QSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YD------IPTNSKDYIHRVGRTARAGR--TGVAISL 356 (437)
Q Consensus 289 ~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~----~~------~p~s~~~~~Q~~GR~~R~g~--~g~~i~~ 356 (437)
..+|..+++.|++|.++|||||++++.|+|+|..++||. |+ .|.++.+|.||+|||||.|. .|.++++
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999885 44 35689999999999999985 5899999
Q ss_pred EccccHHHHHHH
Q 013727 357 VNQYELEWYLQI 368 (437)
Q Consensus 357 ~~~~~~~~~~~l 368 (437)
+.+.+...+..+
T Consensus 470 ~~~~~~~~~~~l 481 (1724)
T 4f92_B 470 TSHGELQYYLSL 481 (1724)
T ss_dssp EESTTCCHHHHH
T ss_pred ecchhHHHHHHH
Confidence 988887766544
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.7e-42 Score=333.25 Aligned_cols=287 Identities=18% Similarity=0.165 Sum_probs=213.9
Q ss_pred CCCCChHHHHHHHHhhhcCCcE-EEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 27 GWKTPSKIQAEAIPHALEGKDL-IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 27 g~~~~~~~Q~~~~~~~~~~~~~-lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
|+.+|+|+|. +++.+++++++ ++.+|||||||++|++|++..+.. .+.+++|++||++|+.|+.+.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRG- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTT-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcC-
Confidence 7889999985 79999998877 999999999999999999987664 457899999999999999998852
Q ss_pred hcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHH-h
Q 013727 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN-V 184 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~-~ 184 (437)
..+......... ....+..|.++|++.|.+.+... ..+.++++||+||||++ +..+...+..+.. .
T Consensus 71 -----~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~ 137 (451)
T 2jlq_A 71 -----LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV 137 (451)
T ss_dssp -----SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHH
T ss_pred -----ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHhh
Confidence 222221111110 11234679999999998887764 35789999999999976 4333333333322 2
Q ss_pred CCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchH
Q 013727 185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCD 264 (437)
Q Consensus 185 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~ 264 (437)
.++..|+++||||++.....+ ....+..+....... .... . .+...+.. ..+++||||++++
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p-~~~~---------~----~~~~~l~~-~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREIP-ERSW---------N----TGFDWITD-YQGKTVWFVPSIK 199 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCCC-SSCC---------S----SSCHHHHH-CCSCEEEECSSHH
T ss_pred cCCCceEEEEccCCCccchhh---hcCCCceEecCccCC-chhh---------H----HHHHHHHh-CCCCEEEEcCCHH
Confidence 345689999999998643221 222222222211100 0000 0 01122223 3568999999999
Q ss_pred HHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEec---------------
Q 013727 265 ATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD--------------- 329 (437)
Q Consensus 265 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~--------------- 329 (437)
.++.+++.|+..++.+..+|+++. ..+++.|++|+.+|||||+++++|+|+|+ ++||++|
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999754 57899999999999999999999999999 9999998
Q ss_pred -----CCCChhhHHHHhhhcccCCC-CceEEEEEcc
Q 013727 330 -----IPTNSKDYIHRVGRTARAGR-TGVAISLVNQ 359 (437)
Q Consensus 330 -----~p~s~~~~~Q~~GR~~R~g~-~g~~i~~~~~ 359 (437)
.|.|..+|+||+||+||.|. .|.++++...
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 7888887643
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.5e-42 Score=341.04 Aligned_cols=302 Identities=17% Similarity=0.193 Sum_probs=226.3
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 109 (437)
.++++|..+++.+.++++++++||||||||++|.++++. .+.+++|++|||+|+.|+++.+.+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------------~g~~vLVl~PTReLA~Qia~~l~~~~--- 281 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------------QGYKVLVLNPSVAATLGFGAYMSKAH--- 281 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------------TTCCEEEEESCHHHHHHHHHHHHHHH---
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------------CCCeEEEEcchHHHHHHHHHHHHHHh---
Confidence 466777777777778899999999999999999888775 45579999999999999998887654
Q ss_pred CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCccc
Q 013727 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189 (437)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~ 189 (437)
+..+...+|+.. ...+.+|+|+||++|+ .. ..+.+.++++||+|||| +++.++...+..++..++..+
T Consensus 282 g~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~ 349 (666)
T 3o8b_A 282 GIDPNIRTGVRT-------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAG 349 (666)
T ss_dssp SCCCEEECSSCE-------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTT
T ss_pred CCCeeEEECcEe-------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcC
Confidence 334455666643 3567899999999983 33 34578889999999997 677788888999999988776
Q ss_pred e--EEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHH
Q 013727 190 Q--TYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATR 267 (437)
Q Consensus 190 ~--~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~ 267 (437)
+ ++++|||++..+. ...+........... . ......... +....++++||||++++.++
T Consensus 350 ~~llil~SAT~~~~i~------~~~p~i~~v~~~~~~--~----i~~~~~~~~-------l~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 350 ARLVVLATATPPGSVT------VPHPNIEEVALSNTG--E----IPFYGKAIP-------IEAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp CSEEEEEESSCTTCCC------CCCTTEEEEECBSCS--S----EEETTEEEC-------GGGSSSSEEEEECSCHHHHH
T ss_pred CceEEEECCCCCcccc------cCCcceEEEeecccc--h----hHHHHhhhh-------hhhccCCcEEEEeCCHHHHH
Confidence 6 7788999987421 111221111111100 0 011100000 12336789999999999999
Q ss_pred HHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEE----------Eec--------
Q 013727 268 LLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI----------NYD-------- 329 (437)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi----------~~~-------- 329 (437)
.+++.|+..++.+..+||++++.+ |.++..+|||||+++++|+|++ +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999875 5566679999999999999996 99988 677
Q ss_pred ---CCCChhhHHHHhhhcccCCCCceEEEEEccccHHH--H--HHHHHHhCCCCCCCCCCHHHHH
Q 013727 330 ---IPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEW--Y--LQIEKLIGKKLPEFPAEEEEVL 387 (437)
Q Consensus 330 ---~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~--~--~~l~~~~~~~~~~~~~~~~~~~ 387 (437)
.|.+.++|+||+||+|| |..|. ++++.+.+... + ..+++..+..+.++..+..+..
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~l~~~~~~ 545 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETS 545 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred cccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCcccccCCchHHH
Confidence 89999999999999999 88999 89988776554 3 5555555555555555444433
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.1e-41 Score=332.84 Aligned_cols=292 Identities=19% Similarity=0.221 Sum_probs=218.8
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 109 (437)
.|+++|.++++.++.++++++.+|||+|||++|+.++... +.++||++|+++|+.||.+++.+|
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 5999999999999999999999999999999998887652 346999999999999999999885
Q ss_pred CcE-EEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCcc
Q 013727 110 SLR-CAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188 (437)
Q Consensus 110 ~~~-~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~ 188 (437)
++. +..++|+... ..+|+|+||+.+...+... ..++++||+||||++.+..+.. ++..+ ..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~ 218 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IA 218 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTC-CC
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhc-CC
Confidence 567 7777776542 4789999999987755421 2458999999999998877654 44444 35
Q ss_pred ceEEEEeecCchH-------------------HHHHHHHhcCCCcE--EEcccccc------------------------
Q 013727 189 RQTYLFSATMTKK-------------------VKKLQRACLKNPVK--IEAASKYS------------------------ 223 (437)
Q Consensus 189 ~~~i~~SAT~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~~------------------------ 223 (437)
.+++++|||+... ...+...++.++.. +.......
T Consensus 219 ~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (472)
T 2fwr_A 219 PFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLR 298 (472)
T ss_dssp SEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTT
T ss_pred CeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 6799999999731 22221111111111 00000000
Q ss_pred cccCceEEE---------------------EEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEe
Q 013727 224 TVDTLKQQY---------------------RFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 282 (437)
Q Consensus 224 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~ 282 (437)
....+...+ .......+...+..++....+.++||||++.+.++.+++.|. +..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 299 RAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred chhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 000000000 001122344566777777778999999999999999998873 567
Q ss_pred ccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCC-ceE--EEEEcc
Q 013727 283 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRT-GVA--ISLVNQ 359 (437)
Q Consensus 283 ~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~-g~~--i~~~~~ 359 (437)
+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+|+..|+|++||+||.|+. +.+ +.++..
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999854 344 445544
Q ss_pred c
Q 013727 360 Y 360 (437)
Q Consensus 360 ~ 360 (437)
.
T Consensus 454 ~ 454 (472)
T 2fwr_A 454 G 454 (472)
T ss_dssp S
T ss_pred C
Confidence 3
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.3e-40 Score=338.71 Aligned_cols=336 Identities=16% Similarity=0.211 Sum_probs=247.3
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC-CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 82 (437)
+.++.+|+++++++.+.+.++..+ ..|++.|+++++.++.+ +++++.||||||||+ ++|++........ ..+
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~----~~g 140 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPH----LEN 140 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGG----GGT
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcccc----CCC
Confidence 456789999999999999999988 67999999999888865 679999999999998 4555522111100 025
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhh-cCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEE
Q 013727 83 FFACVLSPTRELAIQISEQFEALG-SGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (437)
Q Consensus 83 ~~~lvl~P~~~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~v 161 (437)
.++++++|+++|+.|+++.+.... ...+..+........ ......+|+++||+++.+.+.... .+.++++|
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~~--~l~~~~~l 212 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMEDH--DLSRYSCI 212 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHST--TCTTEEEE
T ss_pred ceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhCc--cccCCCEE
Confidence 679999999999999988775543 222222222111110 112468899999999998776643 58899999
Q ss_pred EEccccc-cccccc-HHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCC
Q 013727 162 VLDEADR-LLNDDF-EKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY 239 (437)
Q Consensus 162 ViDE~h~-~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (437)
|+||+|. .++.++ ...+..+.... +..+++++|||++. ..+...+...+ .+...... ..+...|...+...
T Consensus 213 IlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~~~~~~~-vi~v~gr~---~pv~~~~~~~~~~~ 285 (773)
T 2xau_A 213 ILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQRYFNDAP-LLAVPGRT---YPVELYYTPEFQRD 285 (773)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHHHTTSCC-EEECCCCC---CCEEEECCSSCCSC
T ss_pred EecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHHHhcCCC-cccccCcc---cceEEEEecCCchh
Confidence 9999995 565333 33455555444 46789999999964 35555443333 34333222 22333333333333
Q ss_pred hHH----HHHHHHHhcCCCcEEEEecchHHHHHHHHHHHh-----------cCCceEeccCCCCHHHHHHHHHHhh----
Q 013727 240 KDC----YLVYILTEVSASSTMVFTRTCDATRLLALMLRN-----------LGQRAIPISGHMSQSKRLGALNKFK---- 300 (437)
Q Consensus 240 ~~~----~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~---- 300 (437)
... .+..+.....++++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|.
T Consensus 286 ~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~ 365 (773)
T 2xau_A 286 YLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN 365 (773)
T ss_dssp HHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccC
Confidence 222 222333344678999999999999999999985 4678999999999999999999999
Q ss_pred -CCCceEEEEcCCCCCCCCCCCCCEEEEecC------------------CCChhhHHHHhhhcccCCCCceEEEEEcccc
Q 013727 301 -AGECNILICTDVASRGLDIPSVDMVINYDI------------------PTNSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (437)
Q Consensus 301 -~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~------------------p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~ 361 (437)
+|..+|||||+++++|+|+|++++||+++. |.|..+|+||+||+||. ..|.|+.++++.+
T Consensus 366 ~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 366 GRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp SSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred CCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH
Confidence 999999999999999999999999999877 88999999999999998 7899999997654
Q ss_pred H
Q 013727 362 L 362 (437)
Q Consensus 362 ~ 362 (437)
.
T Consensus 445 ~ 445 (773)
T 2xau_A 445 F 445 (773)
T ss_dssp H
T ss_pred h
Confidence 4
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.4e-41 Score=339.48 Aligned_cols=305 Identities=20% Similarity=0.231 Sum_probs=216.6
Q ss_pred HHHhCCCC-----CChHHHH-----HHHHhhh------cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEE
Q 013727 22 ACENVGWK-----TPSKIQA-----EAIPHAL------EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (437)
Q Consensus 22 ~l~~~g~~-----~~~~~Q~-----~~~~~~~------~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (437)
+|..+||. .|+++|. .+++.++ +++++++++|||||||++|++|++..+.. .+.++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~ 273 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRT 273 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcE
Confidence 45566777 8999999 9999988 89999999999999999999999988764 55789
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhC-CCCcEEEECchHHHHHHhcCCCCCCCCccEEEEc
Q 013727 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (437)
Q Consensus 86 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 164 (437)
+|++||++|+.|+++.++.+. +. ...+.. .... .+.-+-+.+.+.+...+... ..+.++++||+|
T Consensus 274 lilaPTr~La~Q~~~~l~~~~----i~--~~~~~l------~~v~tp~~ll~~l~~~~l~~~l~~~--~~l~~l~lvViD 339 (673)
T 2wv9_A 274 AVLAPTRVVAAEMAEALRGLP----VR--YLTPAV------QREHSGNEIVDVMCHATLTHRLMSP--LRVPNYNLFVMD 339 (673)
T ss_dssp EEEESSHHHHHHHHHHTTTSC----CE--ECCC---------CCCCSCCCEEEEEHHHHHHHHHSS--SCCCCCSEEEEE
T ss_pred EEEccHHHHHHHHHHHHhcCC----ee--eecccc------cccCCHHHHHHHHHhhhhHHHHhcc--cccccceEEEEe
Confidence 999999999999999887542 22 111100 0011 11223444555555444443 368899999999
Q ss_pred ccccccccccHHHHHHHHHhCC-ccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHH
Q 013727 165 EADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY 243 (437)
Q Consensus 165 E~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (437)
|+|++ +..+...+..+...++ ...|+++||||++..+..+... ..+ +.......+.......
T Consensus 340 EaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~--------------i~~v~~~~~~~~~~~~ 402 (673)
T 2wv9_A 340 EAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSP--------------VHDVSSEIPDRAWSSG 402 (673)
T ss_dssp STTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSC--------------EEEEECCCCSSCCSSC
T ss_pred CCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCc--------------eEEEeeecCHHHHHHH
Confidence 99987 3222233333333332 5689999999998653221110 011 1000001111111111
Q ss_pred HHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCC
Q 013727 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD 323 (437)
Q Consensus 244 ~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~ 323 (437)
+.. +.. .++++||||++++.++.+++.|+..++.+..+||. +|..+++.|++|+.+|||||+++++|+|+| ++
T Consensus 403 l~~-l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~ 475 (673)
T 2wv9_A 403 FEW-ITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-AS 475 (673)
T ss_dssp CHH-HHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CS
T ss_pred HHH-HHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-Cc
Confidence 222 222 57899999999999999999999999999999993 788999999999999999999999999999 99
Q ss_pred EEEE--------------------ecCCCChhhHHHHhhhcccC-CCCceEEEEE---ccccHHHHHHHHHHh
Q 013727 324 MVIN--------------------YDIPTNSKDYIHRVGRTARA-GRTGVAISLV---NQYELEWYLQIEKLI 372 (437)
Q Consensus 324 ~Vi~--------------------~~~p~s~~~~~Q~~GR~~R~-g~~g~~i~~~---~~~~~~~~~~l~~~~ 372 (437)
+||+ ++.|.+.++|+||+||+||. |+.|.|++++ ++.+...+..++..+
T Consensus 476 ~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 476 RVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred EEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 9998 56899999999999999999 7889999996 566665555555544
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=8.8e-41 Score=321.16 Aligned_cols=278 Identities=17% Similarity=0.209 Sum_probs=195.3
Q ss_pred hhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCC
Q 013727 41 HALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 120 (437)
Q Consensus 41 ~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~ 120 (437)
.+++++++++++|||||||++|++|++..+.. .+.+++|++||++|+.|+++.++.+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc
Confidence 46788999999999999999999999987764 4568999999999999999988744 222211110
Q ss_pred ChHHHHHHhCCCCcEEEECchHHH---------HHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhC-Cccce
Q 013727 121 DMMQQTLALGKRPHIVVATPGRLM---------DHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI-PRMRQ 190 (437)
Q Consensus 121 ~~~~~~~~~~~~~~iiv~Tp~~l~---------~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~-~~~~~ 190 (437)
. .++||+++. ..+... ..+.++++||+||+|++ +..+...+..+.... +...|
T Consensus 70 ~--------------~v~Tp~~l~~~l~~~~l~~~~~~~--~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~ 132 (440)
T 1yks_A 70 S--------------AHGSGREVIDAMCHATLTYRMLEP--TRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESA 132 (440)
T ss_dssp C--------------CCCCSSCCEEEEEHHHHHHHHTSS--SCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCE
T ss_pred e--------------eccCCccceeeecccchhHhhhCc--ccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCce
Confidence 0 256665443 222221 35788999999999988 444433333333332 35689
Q ss_pred EEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHH
Q 013727 191 TYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLA 270 (437)
Q Consensus 191 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~ 270 (437)
+++||||+++.+..+... ..+ +......++.......+..+. . .++++||||++++.++.++
T Consensus 133 ~l~~SAT~~~~~~~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~l~-~-~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 133 TILMTATPPGTSDEFPHS--NGE--------------IEDVQTDIPSEPWNTGHDWIL-A-DKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp EEEECSSCTTCCCSSCCC--SSC--------------EEEEECCCCSSCCSSSCHHHH-H-CCSCEEEECSCHHHHHHHH
T ss_pred EEEEeCCCCchhhhhhhc--CCC--------------eeEeeeccChHHHHHHHHHHH-h-cCCCEEEEeCCHHHHHHHH
Confidence 999999998764322110 001 111111112211111122222 2 3679999999999999999
Q ss_pred HHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEE-------------------ecCC
Q 013727 271 LMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN-------------------YDIP 331 (437)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~-------------------~~~p 331 (437)
+.|+..++.+..+|| .+|..+++.|++|+.+|||||+++++|+|+| +++||+ ++.|
T Consensus 195 ~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p 269 (440)
T 1yks_A 195 ASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR 269 (440)
T ss_dssp HHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc
Confidence 999999999999999 4678899999999999999999999999999 999986 8999
Q ss_pred CChhhHHHHhhhcccC-CCCceEEEEE---ccccHHHHHHHHHHh
Q 013727 332 TNSKDYIHRVGRTARA-GRTGVAISLV---NQYELEWYLQIEKLI 372 (437)
Q Consensus 332 ~s~~~~~Q~~GR~~R~-g~~g~~i~~~---~~~~~~~~~~l~~~~ 372 (437)
.+..+|+||+||+||. |..|.|++++ ++.+...+..++..+
T Consensus 270 ~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 270 ISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 9999999999999997 6889999996 677777777777655
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.6e-39 Score=314.32 Aligned_cols=273 Identities=19% Similarity=0.212 Sum_probs=195.5
Q ss_pred HHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEc
Q 013727 39 IPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 118 (437)
Q Consensus 39 ~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g 118 (437)
...+.+++++++.+|||||||++|++|++..+.. .+.++||++||++|+.|+++.+.. ..+....+
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~ 80 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRG------LPVRYQTS 80 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTT------SCEEECC-
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcC------ceEeEEec
Confidence 4455667899999999999999999999988764 456799999999999999998872 22222111
Q ss_pred CCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccc-----cccccHHHHHHHHHhCCccceEEE
Q 013727 119 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL-----LNDDFEKSLDEILNVIPRMRQTYL 193 (437)
Q Consensus 119 ~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~-----~~~~~~~~~~~i~~~~~~~~~~i~ 193 (437)
.... ....+..+.++|.+.+...+... ..+.++++||+||||++ +..++.... . .+...|+++
T Consensus 81 ~~~~-----~~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~---~--~~~~~~~il 148 (459)
T 2z83_A 81 AVQR-----EHQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIATK---V--ELGEAAAIF 148 (459)
T ss_dssp ------------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHHHH---H--HTTSCEEEE
T ss_pred cccc-----CCCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHHHH---h--ccCCccEEE
Confidence 1110 01123457788888887766654 36889999999999973 222222211 1 135689999
Q ss_pred EeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHH
Q 013727 194 FSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALML 273 (437)
Q Consensus 194 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l 273 (437)
||||++..+..+... ..|..... ...+..... .....+.. .++++||||++++.++.+++.|
T Consensus 149 ~SAT~~~~~~~~~~~--~~pi~~~~--------------~~~~~~~~~-~~~~~l~~-~~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 149 MTATPPGTTDPFPDS--NAPIHDLQ--------------DEIPDRAWS-SGYEWITE-YAGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEEE--------------CCCCSSCCS-SCCHHHHH-CCSCEEEECSCHHHHHHHHHHH
T ss_pred EEcCCCcchhhhccC--CCCeEEec--------------ccCCcchhH-HHHHHHHh-cCCCEEEEeCChHHHHHHHHHH
Confidence 999998653222110 11211100 001111100 01122333 3678999999999999999999
Q ss_pred HhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEE--------------------ecCCCC
Q 013727 274 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN--------------------YDIPTN 333 (437)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~--------------------~~~p~s 333 (437)
+..++.+..+|+. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.|
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 9999999999985 6778999999999999999999999999999 99999 779999
Q ss_pred hhhHHHHhhhcccCCC-CceEEEEEccc
Q 013727 334 SKDYIHRVGRTARAGR-TGVAISLVNQY 360 (437)
Q Consensus 334 ~~~~~Q~~GR~~R~g~-~g~~i~~~~~~ 360 (437)
..+|+||+||+||.|. .|.+++++.+.
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999997 89999999775
No 50
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.8e-38 Score=280.68 Aligned_cols=216 Identities=35% Similarity=0.486 Sum_probs=194.7
Q ss_pred ccccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 013727 3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (437)
Q Consensus 3 ~~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 82 (437)
.++++.+|+++++++.+.+.|+++||..|+++|.++++.+++|+++++.+|||||||++|++|++..+...... ....+
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~-~~~~~ 102 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL-ERGDG 102 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-CTTCC
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc-ccCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999988643211 11246
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEE
Q 013727 83 FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (437)
Q Consensus 83 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 162 (437)
++++|++||++|+.|+.+.++.++...++.+..++|+.....+...+..+++|+|+||++|.+.+.... +.+.++++||
T Consensus 103 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~~~~~~~~lV 181 (242)
T 3fe2_A 103 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK-TNLRRTTYLV 181 (242)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTS-CCCTTCCEEE
T ss_pred CEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-CCcccccEEE
Confidence 789999999999999999999998888899999999998888777777789999999999999887654 5788999999
Q ss_pred EcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEccc
Q 013727 163 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 220 (437)
Q Consensus 163 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 220 (437)
+||||++.+.+|...+..++..+++..|++++|||+++.+..+...++.+|..+....
T Consensus 182 iDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 182 LDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp ETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred EeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999887654
No 51
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.4e-38 Score=279.93 Aligned_cols=209 Identities=70% Similarity=1.088 Sum_probs=190.9
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~ 83 (437)
+++..+|+++++++++.++|+.+||..|+++|.++++.+++++++++.+|||||||++|++|++..+.... .+.
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~------~~~ 112 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP------QRL 112 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC------CSS
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC------CCc
Confidence 34567899999999999999999999999999999999999999999999999999999999998887543 456
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEE
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 163 (437)
++||++|+++|+.|+.+.+++++...++.+..++|+.....+...+..+++|+|+||++|.+.+.....+.+.++++||+
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 79999999999999999999998877889999999988877777777789999999999999887755567889999999
Q ss_pred cccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEc
Q 013727 164 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEA 218 (437)
Q Consensus 164 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 218 (437)
||||++.+.+|...+..++..++...|++++|||++..+..+...++.+|..+.+
T Consensus 193 DEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 193 DEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp CSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999989999999999999999999999999988754
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.5e-38 Score=302.48 Aligned_cols=269 Identities=15% Similarity=0.163 Sum_probs=191.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChH
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 123 (437)
+++++++++|||||||++|++|++..+.. .+.+++|++||++|+.|+.+.+. ++.+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-
Confidence 36899999999999999999999976654 56689999999999999998775 2444444443211
Q ss_pred HHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhC-CccceEEEEeecCchHH
Q 013727 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI-PRMRQTYLFSATMTKKV 202 (437)
Q Consensus 124 ~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~ 202 (437)
....+.-+.+.|.+.+...+... ..+.++++||+||+|++ +..+......+.... +...|++++|||+++.+
T Consensus 66 ----~~~~~~~~~~~~~~~l~~~l~~~--~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 66 ----ERTGNEIVDFMCHSTFTMKLLQG--VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp -------CCCSEEEEEHHHHHHHHHHT--CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCC
T ss_pred ----cCCCCceEEEEchHHHHHHHhcC--ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcch
Confidence 11123557778888887666553 35888999999999987 433334444443332 45789999999998743
Q ss_pred HHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEe
Q 013727 203 KKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 282 (437)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~ 282 (437)
..+... ..+.. .. ....+... ...+...+.. .++++||||++++.++.+++.|+..+..+..
T Consensus 139 ~~~~~~--~~~i~-~~-------------~~~~~~~~-~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 139 EAFPPS--NSPII-DE-------------ETRIPDKA-WNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CSSCCC--SSCCE-EE-------------ECCCCSSC-CSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhcCC--CCcee-ec-------------cccCCHHH-HHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 211100 01110 00 00111111 1111223333 3568999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCE-----------------EEEecCCCChhhHHHHhhhcc
Q 013727 283 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM-----------------VINYDIPTNSKDYIHRVGRTA 345 (437)
Q Consensus 283 ~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~-----------------Vi~~~~p~s~~~~~Q~~GR~~ 345 (437)
+||+ +|..+++.|++|+.+|||||+++++|+|+| +.. ||+++.|.+..+|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 577899999999999999999999999999 544 678899999999999999999
Q ss_pred cCCCC-ceEEEEE
Q 013727 346 RAGRT-GVAISLV 357 (437)
Q Consensus 346 R~g~~-g~~i~~~ 357 (437)
|.|.. |.++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 99854 4555554
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.5e-38 Score=330.33 Aligned_cols=332 Identities=18% Similarity=0.128 Sum_probs=228.3
Q ss_pred CChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 30 TPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
.|+|||.+++..++.. .++++.++||+|||++++..+...+... ...++|||||+ +|+.||..++.+..
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 5999999999998874 5899999999999999877665554421 34479999999 99999999996654
Q ss_pred CCCcEEEEEEcCCChHHHHH--HhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccH--HHHHHHHH
Q 013727 108 GISLRCAVLVGGVDMMQQTL--ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE--KSLDEILN 183 (437)
Q Consensus 108 ~~~~~~~~~~g~~~~~~~~~--~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~--~~~~~i~~ 183 (437)
++.+..+.++........ ......+|+|+|++.+.........+...++++||+||||++...... ..+..+..
T Consensus 224 --~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~ 301 (968)
T 3dmq_A 224 --NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQ 301 (968)
T ss_dssp --CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHH
T ss_pred --CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHH
Confidence 455555544322211111 112357899999998854221111123457899999999998763321 12223333
Q ss_pred hCCccceEEEEeecCchH----HHHHHHHhc----------------------------CC-C-----------------
Q 013727 184 VIPRMRQTYLFSATMTKK----VKKLQRACL----------------------------KN-P----------------- 213 (437)
Q Consensus 184 ~~~~~~~~i~~SAT~~~~----~~~~~~~~~----------------------------~~-~----------------- 213 (437)
......+++++|||+... +..+..... .. +
T Consensus 302 L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 302 LAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp HHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred HhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 323445689999998431 000000000 00 0
Q ss_pred ----------------------------------cEEEccccc---ccccCceEEE------------------------
Q 013727 214 ----------------------------------VKIEAASKY---STVDTLKQQY------------------------ 232 (437)
Q Consensus 214 ----------------------------------~~~~~~~~~---~~~~~~~~~~------------------------ 232 (437)
..+...... ..........
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 000000000 0000000000
Q ss_pred ---------------------EEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHh-cCCceEeccCCCCHH
Q 013727 233 ---------------------RFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRN-LGQRAIPISGHMSQS 290 (437)
Q Consensus 233 ---------------------~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~~~ 290 (437)
.......+...+..++....+.++||||+++..++.++..|.. .|+++..+||++++.
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 1122234566777788877889999999999999999999994 699999999999999
Q ss_pred HHHHHHHHhhCCC--ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHH
Q 013727 291 KRLGALNKFKAGE--CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (437)
Q Consensus 291 ~r~~~~~~f~~g~--~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l 368 (437)
+|..+++.|++|+ ++|||||+++++|+|+|++++||++|+|+++..|+|++||+||.|+.+.++++....+......+
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i 621 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVL 621 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHH
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHH
Confidence 9999999999998 99999999999999999999999999999999999999999999998877666554444444555
Q ss_pred HHHh
Q 013727 369 EKLI 372 (437)
Q Consensus 369 ~~~~ 372 (437)
.+.+
T Consensus 622 ~~~~ 625 (968)
T 3dmq_A 622 VRWY 625 (968)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 54
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4e-38 Score=315.69 Aligned_cols=304 Identities=19% Similarity=0.214 Sum_probs=188.8
Q ss_pred CChHHHHHHHHhhhc----C-CcEEEEcCCCchHHHHHHHHHHHHHHHHhhh-cCCCCCeEEEEEcCcHHHHHHHH-HHH
Q 013727 30 TPSKIQAEAIPHALE----G-KDLIGLAQTGSGKTGAFALPILQALLEIAEN-QRTVPAFFACVLSPTRELAIQIS-EQF 102 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~----~-~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~-~~~~~~~~~lvl~P~~~L~~q~~-~~~ 102 (437)
.|+++|.++++.++. + +++++++|||||||++++. ++..+...... .......++||++|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999876 4 6689999999999999654 44444432211 11124578999999999999999 777
Q ss_pred HHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcC---CCCCCCCccEEEEcccccccccccHHHHH
Q 013727 103 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT---KGFSLGTLKYLVLDEADRLLNDDFEKSLD 179 (437)
Q Consensus 103 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~---~~~~~~~~~~vViDE~h~~~~~~~~~~~~ 179 (437)
+.++. .+..+.++ ....+.+|+|+||++|....... ..+....+++||+||||++.... ...+.
T Consensus 257 ~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 76643 23333322 23356899999999998765321 12456779999999999986642 24556
Q ss_pred HHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccc---cccCceEEEE-----------------------
Q 013727 180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS---TVDTLKQQYR----------------------- 233 (437)
Q Consensus 180 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----------------------- 233 (437)
.++..++. .+++++|||+..........+++.+.......... ..........
T Consensus 324 ~il~~~~~-~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFEP-AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHSTT-SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCCc-ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 67777753 56999999987543322233333332211100000 0000000000
Q ss_pred ----EccCCC--------hHHH----HHHHHHh-cCCCcEEEEecchHHHHHHHHHHHhcCCc--------eEeccCCCC
Q 013727 234 ----FVPAKY--------KDCY----LVYILTE-VSASSTMVFTRTCDATRLLALMLRNLGQR--------AIPISGHMS 288 (437)
Q Consensus 234 ----~~~~~~--------~~~~----~~~~l~~-~~~~~~iVf~~s~~~~~~l~~~l~~~~~~--------~~~~~~~~~ 288 (437)
...... +... +...+.. ..++++||||+++.+|+.+++.|...+.. +..+||.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 000000 0011 2222332 34589999999999999999999876543 677888875
Q ss_pred HHHHHHHHHHhhCCCce---EEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCC
Q 013727 289 QSKRLGALNKFKAGECN---ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR 349 (437)
Q Consensus 289 ~~~r~~~~~~f~~g~~~---ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~ 349 (437)
. +|..+++.|++|+.+ |||||+++++|+|+|++++||++++|+|+..|+|++||+||.+.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4 799999999998766 89999999999999999999999999999999999999999875
No 55
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=274.02 Aligned_cols=213 Identities=33% Similarity=0.455 Sum_probs=180.9
Q ss_pred ccccccCccc-cCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCC
Q 013727 3 EEKEVKTFKE-LGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVP 81 (437)
Q Consensus 3 ~~~~~~~f~~-~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~ 81 (437)
.+++..+|++ +++++++.++|+++||..|+++|.++++.+++++++++.+|||||||++|++|++..+...........
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 3567889999 899999999999999999999999999999999999999999999999999999988765433222336
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEE
Q 013727 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (437)
Q Consensus 82 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~v 161 (437)
+.++||++|+++|+.|+.+.++.+. ..++.+..++|+.....+...+..+++|+|+||++|.+.+.... +.+.++++|
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~-~~~~~~~~l 171 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS-VNLRSITYL 171 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC-CCCTTCCEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cCcccceEE
Confidence 6789999999999999999999986 44788888999888777766777789999999999999877644 578899999
Q ss_pred EEcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEE
Q 013727 162 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIE 217 (437)
Q Consensus 162 ViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 217 (437)
|+||||++.+.+|...+..++..+++..|++++|||+++.+..+...++.+|..+.
T Consensus 172 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 172 VIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999987764
No 56
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9.8e-37 Score=264.25 Aligned_cols=202 Identities=35% Similarity=0.629 Sum_probs=183.3
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lv 87 (437)
.+|+++++++++.+.|+++||..|+++|.++++.+++++++++.+|||||||++|++|++..+.... .+.+++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~------~~~~~li 76 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK------DNIQAMV 76 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS------CSCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC------CCeeEEE
Confidence 5899999999999999999999999999999999999999999999999999999999998764322 4568999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccc
Q 013727 88 LSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (437)
Q Consensus 88 l~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~ 166 (437)
++|+++|+.|+.+.++.+.... ++.+..++|+.....+...+..+++|+|+||++|.+.+.... ..+.++++||+|||
T Consensus 77 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~lViDEa 155 (206)
T 1vec_A 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV-AKVDHVQMIVLDEA 155 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEETH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC-cCcccCCEEEEECh
Confidence 9999999999999999998766 788889999988877777777889999999999998887643 56889999999999
Q ss_pred ccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEE
Q 013727 167 DRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 216 (437)
Q Consensus 167 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 216 (437)
|++.+.+|...+..++..++...|++++|||+++.+..+...++.+|..+
T Consensus 156 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 156 DKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999899999999999999999999999988754
No 57
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.5e-37 Score=272.57 Aligned_cols=209 Identities=36% Similarity=0.558 Sum_probs=176.5
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~ 83 (437)
+++..+|+++++++++.++|+++||..|+++|.++++.+++++++++.+|||||||++|++|++..+.... .+.
T Consensus 26 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~------~~~ 99 (237)
T 3bor_A 26 NEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF------KET 99 (237)
T ss_dssp -CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS------CSC
T ss_pred CCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC------CCc
Confidence 45678999999999999999999999999999999999999999999999999999999999998775322 456
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCC-CcEEEECchHHHHHHhcCCCCCCCCccEEE
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKR-PHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 162 (437)
++||++|+++|+.|+.+.++.++...++.+..+.|+.....+...+..+ ++|+|+||++|.+.+.... +.+.++++||
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~-~~~~~~~~lV 178 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY-LSPKWIKMFV 178 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS-SCSTTCCEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC-cCcccCcEEE
Confidence 8999999999999999999999887788888888887766655555544 8999999999999887643 5688899999
Q ss_pred EcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcc
Q 013727 163 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA 219 (437)
Q Consensus 163 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 219 (437)
+||||++.+.+|...+..++..++...|++++|||+++.+..+...++.+|..+.+.
T Consensus 179 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 179 LDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred ECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999899999999999999999999999998877543
No 58
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=269.29 Aligned_cols=214 Identities=36% Similarity=0.600 Sum_probs=187.6
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~ 83 (437)
.++..+|+++++++.+.+.|+.+||..|+++|.++++.+++++++++.+|||||||++|++|++..+...... ...+.
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~--~~~~~ 98 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT--STDGL 98 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC--GGGCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc--ccCCc
Confidence 4567789999999999999999999999999999999999999999999999999999999999888653211 11466
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEE
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 163 (437)
++||++|+++|+.|+.+.++.++...++.+..++|+.....+...+ .+++|+|+||++|.+.+.....+.+.++++||+
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 7999999999999999999999888788999999988766655555 468999999999999887655567889999999
Q ss_pred cccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEccc
Q 013727 164 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 220 (437)
Q Consensus 164 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 220 (437)
||||++.+.+|...+..++..++...|++++|||+++.+..+.+.++.+|..+....
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred eChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999999999999999999999999999999999999999999999998876543
No 59
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.9e-37 Score=269.99 Aligned_cols=209 Identities=32% Similarity=0.516 Sum_probs=183.4
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEE
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (437)
+.++|+++++++++.++|+++||..|+++|.++++.+++++++++.+|||||||++|++|++..+.... .+.++
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~------~~~~~ 75 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER------AEVQA 75 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS------CSCCE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc------CCceE
Confidence 457899999999999999999999999999999999999999999999999999999999998875322 46789
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCC----CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEE
Q 013727 86 CVLSPTRELAIQISEQFEALGSGI----SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (437)
Q Consensus 86 lvl~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~v 161 (437)
+|++|+++|+.|+.+.+++++... ++.+..++|+.........+..+++|+|+||++|.+.+.... +.+.++++|
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~l 154 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA-LDVHTAHIL 154 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC-CCGGGCCEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC-CCcCcceEE
Confidence 999999999999999999998765 678888888887665555555678999999999998887643 567889999
Q ss_pred EEcccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcccc
Q 013727 162 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 221 (437)
Q Consensus 162 ViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 221 (437)
|+||||++.+.++...+..++..++...|++++|||+++.+..+.+.++.+|..+.....
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred EEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 999999999999999999999999988999999999999999999999999988766543
No 60
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.1e-37 Score=307.22 Aligned_cols=292 Identities=18% Similarity=0.217 Sum_probs=211.9
Q ss_pred HhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcC
Q 013727 40 PHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 119 (437)
Q Consensus 40 ~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~ 119 (437)
...+++++++++||||||||+. ++..+... ...+|++|+++|+.|+++.++.. ++.+..++|+
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~----al~~l~~~---------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~ 212 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYH----AIQKYFSA---------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGE 212 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHH----HHHHHHHS---------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSS
T ss_pred HHhcCCCEEEEEcCCCCCHHHH----HHHHHHhc---------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECC
Confidence 4456789999999999999983 44444432 23489999999999999999886 4778888887
Q ss_pred CChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCC-ccceEEEEeecC
Q 013727 120 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATM 198 (437)
Q Consensus 120 ~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~ 198 (437)
..... .......+++++|++.+. ....+++||+||+|++.+.+++..+..++..++ ...+++++|||.
T Consensus 213 ~~~iv--~TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~ 281 (677)
T 3rc3_A 213 ERVTV--QPNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI 281 (677)
T ss_dssp CEECC--STTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH
T ss_pred eeEEe--cCCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH
Confidence 65410 001123678888875431 245689999999999999999999999988887 677899999995
Q ss_pred chHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCC
Q 013727 199 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQ 278 (437)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~ 278 (437)
+.+..+.... .....+...... ... . ...... ..+... ....+|||++++.++.+++.|+..+.
T Consensus 282 -~~i~~l~~~~-~~~~~v~~~~r~---~~l--~--~~~~~l------~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~ 345 (677)
T 3rc3_A 282 -DLVMELMYTT-GEEVEVRDYKRL---TPI--S--VLDHAL------ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGL 345 (677)
T ss_dssp -HHHHHHHHHH-TCCEEEEECCCS---SCE--E--ECSSCC------CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHhc-CCceEEEEeeec---chH--H--HHHHHH------HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCC
Confidence 3344444433 233332111110 010 0 001100 011112 34568999999999999999999999
Q ss_pred ceEeccCCCCHHHHHHHHHHhhC--CCceEEEEcCCCCCCCCCCCCCEEEEecC--------------CCChhhHHHHhh
Q 013727 279 RAIPISGHMSQSKRLGALNKFKA--GECNILICTDVASRGLDIPSVDMVINYDI--------------PTNSKDYIHRVG 342 (437)
Q Consensus 279 ~~~~~~~~~~~~~r~~~~~~f~~--g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~--------------p~s~~~~~Q~~G 342 (437)
.+..+||+|++.+|..+++.|++ |..+|||||+++++|+|+ ++++||+++. |.|..+|+||+|
T Consensus 346 ~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~G 424 (677)
T 3rc3_A 346 ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAG 424 (677)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHT
T ss_pred CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhc
Confidence 99999999999999999999999 889999999999999999 9999999998 789999999999
Q ss_pred hcccCCCC---ceEEEEEccccHHHHHHHHHHhCCCCC
Q 013727 343 RTARAGRT---GVAISLVNQYELEWYLQIEKLIGKKLP 377 (437)
Q Consensus 343 R~~R~g~~---g~~i~~~~~~~~~~~~~l~~~~~~~~~ 377 (437)
|+||.|.. |.|+.++ +.+...+..+.......+.
T Consensus 425 RAGR~g~~g~~G~v~~l~-~~d~~~~~~~~~~~~~~i~ 461 (677)
T 3rc3_A 425 RAGRFSSRFKEGEVTTMN-HEDLSLLKEILKRPVDPIR 461 (677)
T ss_dssp TBTCTTSSCSSEEEEESS-TTHHHHHHHHHHSCCCCCC
T ss_pred CCCCCCCCCCCEEEEEEe-cchHHHHHHHHhcCcchhh
Confidence 99999965 5555554 4444444444443333343
No 61
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=4.2e-37 Score=275.17 Aligned_cols=226 Identities=39% Similarity=0.556 Sum_probs=189.2
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhc---CCC
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQ---RTV 80 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~---~~~ 80 (437)
.+++.+|+++++++.+.++|+.+||..|+++|.++++.+++++++++.+|||||||++|++|++..+....... ...
T Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 98 (253)
T 1wrb_A 19 TNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKT 98 (253)
T ss_dssp CSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CC
T ss_pred CCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhcccccccccc
Confidence 34778999999999999999999999999999999999999999999999999999999999999886532110 012
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccE
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 160 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 160 (437)
.++++||++|+++|+.|+.+.++.++...++.+..++|+.....+...+..+++|+|+||++|.+.+.... +.+.++++
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~ 177 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK-ISLEFCKY 177 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS-BCCTTCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCC-CChhhCCE
Confidence 34689999999999999999999998888889999999988877777777889999999999999887654 57889999
Q ss_pred EEEcccccccccccHHHHHHHHHh--CCc--cceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceE
Q 013727 161 LVLDEADRLLNDDFEKSLDEILNV--IPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQ 230 (437)
Q Consensus 161 vViDE~h~~~~~~~~~~~~~i~~~--~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (437)
||+||||++.+.+|...+..++.. .+. ..|++++|||+++.+..+...++.+|..+..........++.|
T Consensus 178 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 178 IVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred EEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 999999999999999999999985 343 6799999999999999999999999988877665544444443
No 62
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.9e-37 Score=280.88 Aligned_cols=205 Identities=33% Similarity=0.473 Sum_probs=181.8
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~ 83 (437)
...+|++++|++.+.++|+.+||..|+++|.++++.++.+ +++++++|||||||++|++|++..+.... .++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~------~~~ 163 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN------KYP 163 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS------CSC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC------CCc
Confidence 4578999999999999999999999999999999999997 99999999999999999999998875432 566
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEE
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 162 (437)
++||++||++|+.|+.+.++.++... ++.+....|+...... ...+++|+|+||++|.+++.+...+.+.++++||
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lV 240 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEE
Confidence 89999999999999999999998754 6778888887654322 2456899999999999999776667889999999
Q ss_pred Ecccccccc-cccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEcc
Q 013727 163 LDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA 219 (437)
Q Consensus 163 iDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 219 (437)
+||||++++ .+|...+..++..++..+|+++||||+++.+..++..++.+|..+.+.
T Consensus 241 lDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp ETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 999999998 789999999999999999999999999999999999999999888654
No 63
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.5e-36 Score=267.31 Aligned_cols=206 Identities=31% Similarity=0.515 Sum_probs=180.8
Q ss_pred ccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 013727 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (437)
++..+|+++++++++.+.|+.+||..|+++|.++++.+++++++++.+|||||||++|++|++..+.... .+.+
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~------~~~~ 94 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN------LSTQ 94 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS------CSCC
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC------CCce
Confidence 4567899999999999999999999999999999999999999999999999999999999998875322 4678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEE
Q 013727 85 ACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 163 (437)
+||++|+++|+.|+.+.++.++... ++.+..+.|+.....+...+ .+++|+|+||++|.+.+.... +.+.++++||+
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~-~~~~~~~~lVi 172 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDY-LNPGSIRLFIL 172 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTS-SCGGGCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCC-cccccCCEEEe
Confidence 9999999999999999999998655 78888999988876665555 469999999999999887643 56788999999
Q ss_pred cccccccccc-cHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEc
Q 013727 164 DEADRLLNDD-FEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEA 218 (437)
Q Consensus 164 DE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 218 (437)
||||++.+.+ |...+..++..++...|++++|||+++.+..+...++.+|..+..
T Consensus 173 DEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 173 DEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp SSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999886 999999999999989999999999999999999888988877643
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.1e-36 Score=265.65 Aligned_cols=209 Identities=34% Similarity=0.582 Sum_probs=178.5
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~ 83 (437)
++++.+|+++++++.+.+.|+.+||..|+++|.++++.+++++++++.+|||||||++|++|++..+.... .+.
T Consensus 10 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~------~~~ 83 (224)
T 1qde_A 10 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV------KAP 83 (224)
T ss_dssp CCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC------CSC
T ss_pred CcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC------CCc
Confidence 45667899999999999999999999999999999999999999999999999999999999998875332 567
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEE
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vVi 163 (437)
+++|++|+++|+.|+.+.+..++...++.+..+.|+.....+...+.. ++|+|+||++|.+.+.... +.+.++++||+
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~-~~~~~~~~iVi 161 (224)
T 1qde_A 84 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRR-FRTDKIKMFIL 161 (224)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTS-SCCTTCCEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCC-cchhhCcEEEE
Confidence 899999999999999999999988888899999998776655555444 8999999999998887643 56889999999
Q ss_pred cccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEccc
Q 013727 164 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 220 (437)
Q Consensus 164 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 220 (437)
||||++.+.++...+..++..++...|++++|||+++.+..+...++.+|..+....
T Consensus 162 DEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 162 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred cChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999999999999999999999999999999999999999999998876543
No 65
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=270.40 Aligned_cols=206 Identities=38% Similarity=0.589 Sum_probs=181.0
Q ss_pred ccCccccC--CCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 013727 7 VKTFKELG--LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (437)
Q Consensus 7 ~~~f~~~~--l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (437)
..+|++++ +++++.++|+.+||..|+++|.++++.++.++++++++|||||||++|++|++..+...... ...+.+
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~~ 128 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGTG 128 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGGCCC
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccCCce
Confidence 34677777 99999999999999999999999999999999999999999999999999999988753211 114667
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEc
Q 013727 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViD 164 (437)
++|++||++|+.|+.+.+++++...++.+..++|+.........+..+++|+|+||+++.+++.....+.+.++++||+|
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 99999999999999999999998888999999999988777777767799999999999998887665678899999999
Q ss_pred ccccccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCc
Q 013727 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV 214 (437)
Q Consensus 165 E~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 214 (437)
|||++.+.+|...+..++..++..+|++++|||+++.+..+.+.++.++.
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999998887543
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.3e-35 Score=257.48 Aligned_cols=205 Identities=43% Similarity=0.612 Sum_probs=180.9
Q ss_pred cCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 013727 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lv 87 (437)
++|+++++++++.+.|+++||..|+++|.++++.+++++++++.+|||||||++|++|++..+.... ....+.+++|
T Consensus 1 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~---~~~~~~~~li 77 (207)
T 2gxq_A 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ---ERGRKPRALV 77 (207)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC---CTTCCCSEEE
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc---ccCCCCcEEE
Confidence 3799999999999999999999999999999999999999999999999999999999998875321 1124678999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccc
Q 013727 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (437)
Q Consensus 88 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h 167 (437)
++|+++|+.|+.+.++.+... +.+..++|+.........+..+++|+|+||+++.+.+... .+.+.++++||+||||
T Consensus 78 l~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG-VLDLSRVEVAVLDEAD 154 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT-SSCCTTCSEEEEESHH
T ss_pred EECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC-CcchhhceEEEEEChh
Confidence 999999999999999998755 6778888888776666666667999999999999888764 3578899999999999
Q ss_pred cccccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEEc
Q 013727 168 RLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEA 218 (437)
Q Consensus 168 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 218 (437)
++.+.++...+..++..++...|++++|||+++.+..+.+.++.+|..+..
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999989999999999999999999999999987754
No 67
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.6e-33 Score=272.91 Aligned_cols=319 Identities=19% Similarity=0.167 Sum_probs=236.2
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|+ .|++.|.-..-.+..|+ +..+.||+|||+++.+|++-..+ .+..+.|++|+..||.|-++.+..
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL---------~G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL---------IGKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh---------cCCceEEEeccHHHHHhHHHHHHH
Confidence 4788 69999999999998886 99999999999999999875554 566799999999999999999999
Q ss_pred hhcCCCcEEEEEEcC--------------------------------------------------CChHHHHHHhCCCCc
Q 013727 105 LGSGISLRCAVLVGG--------------------------------------------------VDMMQQTLALGKRPH 134 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~--------------------------------------------------~~~~~~~~~~~~~~~ 134 (437)
+...+|+++.++... .+.......+ .+|
T Consensus 139 l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~D 216 (822)
T 3jux_A 139 VYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCD 216 (822)
T ss_dssp HHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSS
T ss_pred HHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCC
Confidence 999999999998872 1111111222 479
Q ss_pred EEEECchHH-HHHHhcCC-----CCCCCCccEEEEccccccccc----------------cc------------------
Q 013727 135 IVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLND----------------DF------------------ 174 (437)
Q Consensus 135 iiv~Tp~~l-~~~l~~~~-----~~~~~~~~~vViDE~h~~~~~----------------~~------------------ 174 (437)
|+++|..-| .++|..+- ..-.+.+.+.|+||+|.++=. .+
T Consensus 217 ItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~ 296 (822)
T 3jux_A 217 VTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFT 296 (822)
T ss_dssp EEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEE
T ss_pred CEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEE
Confidence 999998876 45554331 123467899999999942110 00
Q ss_pred --------------------------------HHHHHHHHHh------CC------------------------------
Q 013727 175 --------------------------------EKSLDEILNV------IP------------------------------ 186 (437)
Q Consensus 175 --------------------------------~~~~~~i~~~------~~------------------------------ 186 (437)
...+..+... +.
T Consensus 297 vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~ 376 (822)
T 3jux_A 297 VDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSG 376 (822)
T ss_dssp ECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGG
T ss_pred EEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCch
Confidence 0000111000 00
Q ss_pred -------------------------------ccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceE-EEEE
Q 013727 187 -------------------------------RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQ-QYRF 234 (437)
Q Consensus 187 -------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 234 (437)
....+.+||+|.......+...+..+ .+.++... +.....+ ...+
T Consensus 377 GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnk-p~~R~d~~d~vy 453 (822)
T 3jux_A 377 GLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTHK-PMIRKDHDDLVF 453 (822)
T ss_dssp GHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCSS-CCCCEECCCEEE
T ss_pred HHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCCC-CcceeecCcEEE
Confidence 01257899999998888887766544 33333222 1122222 2345
Q ss_pred ccCCChHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC
Q 013727 235 VPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV 312 (437)
Q Consensus 235 ~~~~~~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 312 (437)
.+...+...+...+... .+.++||||+|++.++.++..|+..|+++..+||+..+.++..+...++.| .|+|||++
T Consensus 454 ~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdm 531 (822)
T 3jux_A 454 RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNM 531 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETT
T ss_pred ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcch
Confidence 55556666666666543 578999999999999999999999999999999996666665555666666 69999999
Q ss_pred CCCCCCCC--------CCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccH
Q 013727 313 ASRGLDIP--------SVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (437)
Q Consensus 313 ~~~Gid~~--------~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 362 (437)
+++|+|++ +..+||+++.|.|...|.||+||+||+|.+|.+++|++..|.
T Consensus 532 AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 532 AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 99999998 567999999999999999999999999999999999998773
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.3e-35 Score=289.17 Aligned_cols=309 Identities=17% Similarity=0.177 Sum_probs=210.9
Q ss_pred CChHHHHHHHHhhh----cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 30 TPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
.|+|||.++++.+. .+++.++..+||+|||++++..+ ..+.... ...++||+|| .+|+.||.++++++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~~~------~~~~~LIv~P-~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKEN------ELTPSLVICP-LSVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHTT------CCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHhcC------CCCCEEEEcc-HHHHHHHHHHHHHH
Confidence 59999999998874 56899999999999999865443 3333221 3457999999 46899999999998
Q ss_pred hcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhC
Q 013727 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~ 185 (437)
... +++..+.|+... ......+|+|+|++++..... +....+++||+||||++.+... .....+..+
T Consensus 109 ~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l 175 (500)
T 1z63_A 109 APH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKEL 175 (500)
T ss_dssp CTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTS
T ss_pred CCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHhh
Confidence 754 455555555421 112357899999999855332 2344689999999999876442 233444445
Q ss_pred CccceEEEEeecCchH-HHHH---HHHh--------------------------------cCCCcEEEccccc----ccc
Q 013727 186 PRMRQTYLFSATMTKK-VKKL---QRAC--------------------------------LKNPVKIEAASKY----STV 225 (437)
Q Consensus 186 ~~~~~~i~~SAT~~~~-~~~~---~~~~--------------------------------~~~~~~~~~~~~~----~~~ 225 (437)
+ ..+.+++|||+... ..++ .... +-.+..+...... ...
T Consensus 176 ~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~l 254 (500)
T 1z63_A 176 K-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDL 254 (500)
T ss_dssp C-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTS
T ss_pred c-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcC
Confidence 3 35689999998432 1111 1100 0012222111100 011
Q ss_pred cCceEEEEEcc---------------------------------------------------------CCChHHHHHHHH
Q 013727 226 DTLKQQYRFVP---------------------------------------------------------AKYKDCYLVYIL 248 (437)
Q Consensus 226 ~~~~~~~~~~~---------------------------------------------------------~~~~~~~~~~~l 248 (437)
+........++ ...|...+..++
T Consensus 255 p~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 255 PDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 11111111111 112223333444
Q ss_pred Hhc--CCCcEEEEecchHHHHHHHHHHHhc-CCceEeccCCCCHHHHHHHHHHhhCC-Cce-EEEEcCCCCCCCCCCCCC
Q 013727 249 TEV--SASSTMVFTRTCDATRLLALMLRNL-GQRAIPISGHMSQSKRLGALNKFKAG-ECN-ILICTDVASRGLDIPSVD 323 (437)
Q Consensus 249 ~~~--~~~~~iVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-ilv~T~~~~~Gid~~~~~ 323 (437)
... .+.++||||++...++.++..|... +..+..+||+++..+|.++++.|++| ..+ +|++|+++++|+|++.++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 433 5789999999999999999999885 99999999999999999999999998 555 799999999999999999
Q ss_pred EEEEecCCCChhhHHHHhhhcccCCCCceEE--EEEccc
Q 013727 324 MVINYDIPTNSKDYIHRVGRTARAGRTGVAI--SLVNQY 360 (437)
Q Consensus 324 ~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i--~~~~~~ 360 (437)
+||++|+|+++..|.|++||++|.|+.+.+. .++...
T Consensus 415 ~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 415 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp EEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 9999999999999999999999999876553 444444
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-35 Score=258.45 Aligned_cols=206 Identities=34% Similarity=0.602 Sum_probs=178.5
Q ss_pred ccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 013727 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (437)
....+|+++++++++.+.|+++||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.... ...+
T Consensus 11 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~------~~~~ 84 (220)
T 1t6n_A 11 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT------GQVS 84 (220)
T ss_dssp ---CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT------TCCC
T ss_pred ccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC------CCEE
Confidence 3446799999999999999999999999999999999999999999999999999999999998764321 3458
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCChHHHHHHhC-CCCcEEEECchHHHHHHhcCCCCCCCCccEEE
Q 013727 85 ACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vV 162 (437)
++|++|+++|+.|+.+.++++.... ++.+..++|+.....+...+. ..++|+|+||++|.+.+.... +.+.++++||
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~lV 163 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS-LNLKHIKHFI 163 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS-SCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC-CCcccCCEEE
Confidence 9999999999999999999998765 788899999887766555443 347999999999998887643 5788999999
Q ss_pred Ecccccccc-cccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHhcCCCcEEE
Q 013727 163 LDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIE 217 (437)
Q Consensus 163 iDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 217 (437)
+||||++.+ .++...+..++..++...|++++|||+++.+..+...++.+|..+.
T Consensus 164 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 164 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999987 5788889999999988899999999999999999999999987664
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=262.85 Aligned_cols=214 Identities=31% Similarity=0.500 Sum_probs=179.5
Q ss_pred ccccccCcccc----CCCHHHHHHHHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcC
Q 013727 3 EEKEVKTFKEL----GLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQR 78 (437)
Q Consensus 3 ~~~~~~~f~~~----~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~ 78 (437)
.++++.+|+++ ++++++.+.|.++||..|+++|.++++.+++++++++.+|||||||++|++|++..+...
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----- 94 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP----- 94 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-----
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-----
Confidence 35678899988 899999999999999999999999999999999999999999999999999999877531
Q ss_pred CCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHH-HHhCCCCcEEEECchHHHHHHhcCC-CCCCC
Q 013727 79 TVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT-LALGKRPHIVVATPGRLMDHLTNTK-GFSLG 156 (437)
Q Consensus 79 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~iiv~Tp~~l~~~l~~~~-~~~~~ 156 (437)
...+.+++|++|+++|+.|+.+.+++++...++.+..+.|+....... .....+++|+|+||++|.+.+.... .+.+.
T Consensus 95 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 95 ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 114668999999999999999999999888788877776654332211 1223568999999999999887653 35788
Q ss_pred CccEEEEcccccccc---cccHHHHHHHHHhC-CccceEEEEeecCchHHHHHHHHhcCCCcEEEcccc
Q 013727 157 TLKYLVLDEADRLLN---DDFEKSLDEILNVI-PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 221 (437)
Q Consensus 157 ~~~~vViDE~h~~~~---~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 221 (437)
++++||+||||++.+ .+|...+..++..+ +...|+++||||+++.+..+...++.+|..+.....
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999999999988 57888888887765 356799999999999999999999999998877653
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=2.4e-34 Score=297.99 Aligned_cols=310 Identities=15% Similarity=0.141 Sum_probs=207.6
Q ss_pred CChHHHHHHHHhhhc--------------CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 013727 30 TPSKIQAEAIPHALE--------------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELA 95 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~--------------~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 95 (437)
.||++|..+++.++. +++.+++++||||||+++ ++++..+... ....++|||+|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~------~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL------DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC------TTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc------CCCceEEEEeCcHHHH
Confidence 599999999999875 368999999999999997 5555433221 1346899999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh-CCCCcEEEECchHHHHHHhcCCCC-CCCCccEEEEcccccccccc
Q 013727 96 IQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDD 173 (437)
Q Consensus 96 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~iiv~Tp~~l~~~l~~~~~~-~~~~~~~vViDE~h~~~~~~ 173 (437)
.|+.+.+..++... +.++.+.......+ ..+.+|+|+||++|...+.....+ .+....+||+||||++...
T Consensus 344 ~Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~- 416 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG- 416 (1038)
T ss_dssp HHHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH-
T ss_pred HHHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch-
Confidence 99999999886431 12333333333344 356899999999998877543211 3557789999999997543
Q ss_pred cHHHHHHHHHhCCccceEEEEeecCchHHH----HHHHHhcCC-----------------CcEEEccccccccc------
Q 013727 174 FEKSLDEILNVIPRMRQTYLFSATMTKKVK----KLQRACLKN-----------------PVKIEAASKYSTVD------ 226 (437)
Q Consensus 174 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~----~~~~~~~~~-----------------~~~~~~~~~~~~~~------ 226 (437)
..+..+...++. .+.++||||+..... .....++++ |..+..........
T Consensus 417 --~~~~~I~~~~p~-a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~ 493 (1038)
T 2w00_A 417 --EAQKNLKKKFKR-YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETET 493 (1038)
T ss_dssp --HHHHHHHHHCSS-EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCC
T ss_pred --HHHHHHHHhCCc-ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccc
Confidence 345666677764 679999999974321 011111222 22211110000000
Q ss_pred ------CceEEEEEccCCChH-HHHHHHHHhc-----------CCCcEEEEecchHHHHHHHHHHHhcC-----------
Q 013727 227 ------TLKQQYRFVPAKYKD-CYLVYILTEV-----------SASSTMVFTRTCDATRLLALMLRNLG----------- 277 (437)
Q Consensus 227 ------~~~~~~~~~~~~~~~-~~~~~~l~~~-----------~~~~~iVf~~s~~~~~~l~~~l~~~~----------- 277 (437)
.+.+.. ......+. ..+..++... .+.++||||+|+..|..+++.|...+
T Consensus 494 d~~~~~~i~~~~-~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~ 572 (1038)
T 2w00_A 494 DEKKLSAAENQQ-AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYK 572 (1038)
T ss_dssp CHHHHHHTCSTT-TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred cHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccc
Confidence 000000 00011111 1122233311 34579999999999999999998754
Q ss_pred -Cce-EeccCC----------C----------CH-----------------------------HHHHHHHHHhhCCCceE
Q 013727 278 -QRA-IPISGH----------M----------SQ-----------------------------SKRLGALNKFKAGECNI 306 (437)
Q Consensus 278 -~~~-~~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~i 306 (437)
.++ .++|++ + ++ .+|..++++|++|+++|
T Consensus 573 ~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~I 652 (1038)
T 2w00_A 573 PLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDL 652 (1038)
T ss_dssp CCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSE
T ss_pred cCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeE
Confidence 444 445542 2 22 14788999999999999
Q ss_pred EEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCC----ceEEEEEc
Q 013727 307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRT----GVAISLVN 358 (437)
Q Consensus 307 lv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~----g~~i~~~~ 358 (437)
||+|+++.+|+|+|.+ .++++|.|.+...|+|++||++|.+.. |.++.++.
T Consensus 653 LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999999 678899999999999999999998753 66666664
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=284.22 Aligned_cols=316 Identities=18% Similarity=0.226 Sum_probs=220.0
Q ss_pred CChHHHHHHHHhhh----cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 30 TPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
+|+|||.+++..+. .+.+.++..+||+|||++++..+...+.... ....+||||| .+|+.||.+++.++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~------~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR------QNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS------CCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC------CCCCEEEEEC-chHHHHHHHHHHHH
Confidence 69999999998776 6789999999999999987665544433322 4456899999 68899999999998
Q ss_pred hcCCCcEEEEEEcCCChHHHHHH------------hCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccc
Q 013727 106 GSGISLRCAVLVGGVDMMQQTLA------------LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD 173 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~ 173 (437)
+.. +.+...+|+......... .....+|+|+|++.+...... +....+++||+||||++-+..
T Consensus 309 ~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~ 383 (800)
T 3mwy_W 309 APD--LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAE 383 (800)
T ss_dssp STT--CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSS
T ss_pred CCC--ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCch
Confidence 744 566666666554333221 123578999999999664332 223358899999999985532
Q ss_pred cHHHHHHHHHhCCccceEEEEeecCch----HHHHHHHHhcCC-----------------------------CcEEEccc
Q 013727 174 FEKSLDEILNVIPRMRQTYLFSATMTK----KVKKLQRACLKN-----------------------------PVKIEAAS 220 (437)
Q Consensus 174 ~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~-----------------------------~~~~~~~~ 220 (437)
. .....+..++ ....+++|||+.. ++..+....... |..+....
T Consensus 384 s--~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 384 S--SLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp S--HHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred h--HHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 2 3334444443 4457899999832 122222211111 11111110
Q ss_pred ccc--cccCceEEEEEcc--------------------------------------------------------------
Q 013727 221 KYS--TVDTLKQQYRFVP-------------------------------------------------------------- 236 (437)
Q Consensus 221 ~~~--~~~~~~~~~~~~~-------------------------------------------------------------- 236 (437)
... ..+........++
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 000 0000011111110
Q ss_pred -------------CCChHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhC
Q 013727 237 -------------AKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA 301 (437)
Q Consensus 237 -------------~~~~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 301 (437)
...|...+..++... .+.++||||.....+..+...|...|+.+..+||+++..+|..+++.|++
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 122333444555443 56799999999999999999999999999999999999999999999998
Q ss_pred CCc---eEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceE--EEEEccc
Q 013727 302 GEC---NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVA--ISLVNQY 360 (437)
Q Consensus 302 g~~---~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~--i~~~~~~ 360 (437)
+.. .+|++|.++++|+|++.+++||++|+||++..+.|++||++|.|++..+ +.++...
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 654 4899999999999999999999999999999999999999999986544 4455544
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.2e-31 Score=266.43 Aligned_cols=321 Identities=17% Similarity=0.178 Sum_probs=215.2
Q ss_pred CChHHHHHHHHhhh---------cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH
Q 013727 30 TPSKIQAEAIPHAL---------EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 100 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~---------~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 100 (437)
.|+|||.+++..+. .+...++..+||+|||+.++..+...+...+. ..+...++||+||+ +|+.||.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~--~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD--CKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT--SSCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc--ccCCCCcEEEEecH-HHHHHHHH
Confidence 58999999999874 34678999999999999876655544432211 11123568999997 89999999
Q ss_pred HHHHhhcCCCcEEEEEEcCCChHHH--HH-HhC-----CCCcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccc
Q 013727 101 QFEALGSGISLRCAVLVGGVDMMQQ--TL-ALG-----KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND 172 (437)
Q Consensus 101 ~~~~~~~~~~~~~~~~~g~~~~~~~--~~-~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~ 172 (437)
++.++... .+.+..+.++...... .. ... ...+|+|+|++.+..... .+....+++||+||||++-+.
T Consensus 132 E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 132 EVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTT
T ss_pred HHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCCh
Confidence 99998754 4555666666543211 11 111 147899999999876442 234567899999999988653
Q ss_pred ccHHHHHHHHHhCCccceEEEEeecCchHH-------------------HHHHHHhc-----------------------
Q 013727 173 DFEKSLDEILNVIPRMRQTYLFSATMTKKV-------------------KKLQRACL----------------------- 210 (437)
Q Consensus 173 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~-------------------~~~~~~~~----------------------- 210 (437)
.. .....+ ..++ ....+++|||+.... ..+...+.
T Consensus 208 ~~-~~~~al-~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 284 (644)
T 1z3i_X 208 DN-QTYLAL-NSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKL 284 (644)
T ss_dssp CH-HHHHHH-HHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHH
T ss_pred hh-HHHHHH-Hhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHH
Confidence 32 222222 3333 345799999974321 00000000
Q ss_pred ------CCCcEEEcccccc--cccCceEEEEEcc----------------------------------------------
Q 013727 211 ------KNPVKIEAASKYS--TVDTLKQQYRFVP---------------------------------------------- 236 (437)
Q Consensus 211 ------~~~~~~~~~~~~~--~~~~~~~~~~~~~---------------------------------------------- 236 (437)
-.|..+.-..... ..+........++
T Consensus 285 ~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~ 364 (644)
T 1z3i_X 285 QELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPA 364 (644)
T ss_dssp HHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHH
Confidence 0000110000000 0000000000000
Q ss_pred --------------------------------CCChHHHHHHHHHh---cCCCcEEEEecchHHHHHHHHHHHhcCCceE
Q 013727 237 --------------------------------AKYKDCYLVYILTE---VSASSTMVFTRTCDATRLLALMLRNLGQRAI 281 (437)
Q Consensus 237 --------------------------------~~~~~~~~~~~l~~---~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~ 281 (437)
...+...+..++.. ..+.++||||++...++.+...|...|+.+.
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~ 444 (644)
T 1z3i_X 365 LIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYV 444 (644)
T ss_dssp HHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEE
Confidence 01122233333332 3578999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHHHhhCCCce---EEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceE--EEE
Q 013727 282 PISGHMSQSKRLGALNKFKAGECN---ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVA--ISL 356 (437)
Q Consensus 282 ~~~~~~~~~~r~~~~~~f~~g~~~---ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~--i~~ 356 (437)
.+||+++..+|..+++.|++|... +|++|+++++|+|++++++||++|+||++..+.|++||++|.|+...+ +.+
T Consensus 445 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~l 524 (644)
T 1z3i_X 445 RLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRL 524 (644)
T ss_dssp EECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEE
T ss_pred EEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEE
Confidence 999999999999999999998754 899999999999999999999999999999999999999999987644 344
Q ss_pred Eccc
Q 013727 357 VNQY 360 (437)
Q Consensus 357 ~~~~ 360 (437)
+...
T Consensus 525 v~~~ 528 (644)
T 1z3i_X 525 LSTG 528 (644)
T ss_dssp EETT
T ss_pred EECC
Confidence 5444
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=3.9e-29 Score=246.67 Aligned_cols=132 Identities=24% Similarity=0.262 Sum_probs=113.7
Q ss_pred hCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
.+|+ .|+++|..+++.+++|+ ++.+.||+|||++|.+|++...+ .+..++|++||++||.|.++.+..
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---------~G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---------TGKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---------TCSCCEEEESSHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---------hCCCEEEEeCCHHHHHHHHHHHHH
Confidence 4899 89999999999999998 99999999999999999965443 455699999999999999999999
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHH-HHHHhcCC-----CCCCC---CccEEEEccccccc
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLG---TLKYLVLDEADRLL 170 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~-----~~~~~---~~~~vViDE~h~~~ 170 (437)
+...+++++.+++||.+........ +++|+|+||+.| ++++..+- .+.++ .+.++|+||+|.++
T Consensus 143 l~~~lGLsv~~i~Gg~~~~~r~~ay--~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 143 VYRGLGLSVGVIQHASTPAERRKAY--LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHTTTCCEEECCTTCCHHHHHHHH--TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999999998865444443 589999999999 78887652 23567 89999999999876
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=1.6e-28 Score=246.57 Aligned_cols=117 Identities=24% Similarity=0.330 Sum_probs=108.3
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecC-
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI- 330 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~- 330 (437)
.+.++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHH
Q 013727 331 ----PTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIE 369 (437)
Q Consensus 331 ----p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~ 369 (437)
|.|..+|+||+||+||.+ .|.+++++++.+......++
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 899999999999999985 79999999887665444433
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=4.6e-29 Score=206.82 Aligned_cols=157 Identities=36% Similarity=0.578 Sum_probs=149.0
Q ss_pred cccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCC
Q 013727 224 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303 (437)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 303 (437)
...++.+.+..++...|...+..++....+.++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34568889999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCC
Q 013727 304 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFP 380 (437)
Q Consensus 304 ~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 380 (437)
.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++++.+.+...+..+++.++.++++.+
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877654
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=2.3e-27 Score=238.00 Aligned_cols=173 Identities=19% Similarity=0.235 Sum_probs=130.0
Q ss_pred ccceEEEEeecCchHHHHHHHHhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHh-c-CCCcEEEEecchH
Q 013727 187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE-V-SASSTMVFTRTCD 264 (437)
Q Consensus 187 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~iVf~~s~~ 264 (437)
...|++++|||++...... ............... .. .+...+.......+...+.. . .+.++||||+++.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~-~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLL-DP---LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCC-CC---EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCC-CC---eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 3578999999998653221 111111111110000 01 11122223333333333332 2 5679999999999
Q ss_pred HHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecC-----CCChhhHHH
Q 013727 265 ATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI-----PTNSKDYIH 339 (437)
Q Consensus 265 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~-----p~s~~~~~Q 339 (437)
.++.+++.|+..|+++..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|. |.|..+|+|
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HhhhcccCCCCceEEEEEccccHHHHHHH
Q 013727 340 RVGRTARAGRTGVAISLVNQYELEWYLQI 368 (437)
Q Consensus 340 ~~GR~~R~g~~g~~i~~~~~~~~~~~~~l 368 (437)
|+||+||. ..|.+++++++.+......+
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 99999998 78999999988766544433
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1.6e-28 Score=205.15 Aligned_cols=157 Identities=29% Similarity=0.480 Sum_probs=146.5
Q ss_pred cCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCce
Q 013727 226 DTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305 (437)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 305 (437)
..+.+.+..++...|...+..++....+.++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 56788899999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccc-cHHHHHHHHHHhCCCCCCCCCC
Q 013727 306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY-ELEWYLQIEKLIGKKLPEFPAE 382 (437)
Q Consensus 306 ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 382 (437)
|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++.+. +...+..+++.++..++++|..
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 9999999999999999999999999999999999999999999999999999875 5678899999999988887754
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=1.9e-28 Score=203.69 Aligned_cols=157 Identities=33% Similarity=0.543 Sum_probs=143.0
Q ss_pred CceEEEEEccCCC-hHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCce
Q 013727 227 TLKQQYRFVPAKY-KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305 (437)
Q Consensus 227 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 305 (437)
++.+.+..++... |...+..++....++++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 5677888888776 889999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCH
Q 013727 306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEE 383 (437)
Q Consensus 306 ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 383 (437)
|||||+++++|+|+|++++||++|.|+++.+|+||+||+||.|+.|.+++++.+.+...+..+++.++..+++++...
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCC
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988887653
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=206.36 Aligned_cols=160 Identities=26% Similarity=0.550 Sum_probs=145.3
Q ss_pred cccCceEEEEEccCCC-hHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCC
Q 013727 224 TVDTLKQQYRFVPAKY-KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 302 (437)
Q Consensus 224 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 302 (437)
...++.+.+..++... |...+..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3467888888888766 888888888888888999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCCCCCCCCCCEEEEecCC------CChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCC
Q 013727 303 ECNILICTDVASRGLDIPSVDMVINYDIP------TNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKL 376 (437)
Q Consensus 303 ~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p------~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~ 376 (437)
+.+|||||+++++|+|+|++++||++|.| .+..+|+||+||+||.|+.|.+++++.+.+...+..+++.++..+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 899999999999999999999999999999999999999999988
Q ss_pred CCCCCCH
Q 013727 377 PEFPAEE 383 (437)
Q Consensus 377 ~~~~~~~ 383 (437)
++++...
T Consensus 164 ~~~~~~~ 170 (175)
T 2rb4_A 164 KQLNAED 170 (175)
T ss_dssp EEECSSC
T ss_pred cccCCch
Confidence 8776543
No 81
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=208.20 Aligned_cols=172 Identities=27% Similarity=0.467 Sum_probs=139.3
Q ss_pred HhcCCCcEEEcccccccccCceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCC
Q 013727 208 ACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHM 287 (437)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 287 (437)
.++.+|..+...........+.+.+..++...|...+..++... +.++||||+++..++.+++.|+..++.+..+||++
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~ 88 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGK 88 (191)
T ss_dssp ------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTS
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 35667777777766666678999999999888988888888765 46899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccc-cHHHHH
Q 013727 288 SQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY-ELEWYL 366 (437)
Q Consensus 288 ~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~-~~~~~~ 366 (437)
++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++++.+. +...+.
T Consensus 89 ~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~ 168 (191)
T 2p6n_A 89 DQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLM 168 (191)
T ss_dssp CHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHH
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 778888
Q ss_pred HHHHHhCCCCCCCC
Q 013727 367 QIEKLIGKKLPEFP 380 (437)
Q Consensus 367 ~l~~~~~~~~~~~~ 380 (437)
.+++.+......+|
T Consensus 169 ~l~~~l~~~~~~~p 182 (191)
T 2p6n_A 169 DLKALLLEAKQKVP 182 (191)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHccCcCC
Confidence 88888766555554
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.96 E-value=1.4e-27 Score=206.47 Aligned_cols=158 Identities=35% Similarity=0.533 Sum_probs=146.2
Q ss_pred ceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEE
Q 013727 228 LKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307 (437)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~il 307 (437)
+.+.+..++...+...+..++....++++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 44566777888899999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCHHH
Q 013727 308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEEE 385 (437)
Q Consensus 308 v~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 385 (437)
|||+++++|+|+|++++||++|.|+++..|+||+||+||.|+.|.|++++++.+...+..+++.++..+..++.+...
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 163 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 163 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHH
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988877765433
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=4.7e-28 Score=204.56 Aligned_cols=159 Identities=35% Similarity=0.556 Sum_probs=134.3
Q ss_pred ccccCceEEEEEccCCChHHHHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhC
Q 013727 223 STVDTLKQQYRFVPAKYKDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA 301 (437)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 301 (437)
....++.+.+..++...|...+..++... .+.++||||+++..++.++..|+..++.+..+||++++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 44568889999999888999999998877 57899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCC
Q 013727 302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPA 381 (437)
Q Consensus 302 g~~~ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 381 (437)
|+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++++.+.+...+..+.+.++....++|.
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777766653
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=1.1e-26 Score=209.96 Aligned_cols=156 Identities=35% Similarity=0.534 Sum_probs=143.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEE
Q 013727 228 LKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307 (437)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~il 307 (437)
+.+.+..++...|...+..++....++++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 46778888889999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCCCH
Q 013727 308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEE 383 (437)
Q Consensus 308 v~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 383 (437)
|||+++++|+|+|++++||++|.|++...|+||+||+||.|+.|.|++++++.+...+..+++.++..++.++.+.
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~ 158 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPT 158 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCC
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888776543
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.89 E-value=3.4e-28 Score=203.07 Aligned_cols=155 Identities=36% Similarity=0.564 Sum_probs=141.5
Q ss_pred CceEEEEEccC-CChHHHHHHHHHhcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCce
Q 013727 227 TLKQQYRFVPA-KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305 (437)
Q Consensus 227 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 305 (437)
++.+.+..++. ..+...+..++....+.++||||+++..++.+++.|+..++.+..+||++++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 34566666666 67777888888877788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCCCCC
Q 013727 306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPA 381 (437)
Q Consensus 306 ilv~T~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 381 (437)
|||||+++++|+|+|++++||++|.|+++..|+||+||+||.|+.|.+++++.+.+...+..+++.++..+++.+.
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999999888877765543
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=2.2e-25 Score=194.20 Aligned_cols=168 Identities=21% Similarity=0.161 Sum_probs=119.2
Q ss_pred CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH-HHHHHHH
Q 013727 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ-ISEQFEA 104 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q-~~~~~~~ 104 (437)
.+...|+++|.++++.++.++++++.+|||+|||++++++++..+...... ..+.++||++|+++|+.| +.+.+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 344579999999999999999999999999999999999988877654321 135679999999999999 7888888
Q ss_pred hhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCC-----CCCCCccEEEEcccccccccccHHHH-
Q 013727 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-----FSLGTLKYLVLDEADRLLNDDFEKSL- 178 (437)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~-----~~~~~~~~vViDE~h~~~~~~~~~~~- 178 (437)
+... ++.+..+.|+.............++|+|+||++|...+..... +.+.++++||+||||++.+.++...+
T Consensus 106 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 106 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred Hhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 8754 6777777777654333223223589999999999988876432 45778999999999999876554443
Q ss_pred HHHHHhC-------------CccceEEEEeec
Q 013727 179 DEILNVI-------------PRMRQTYLFSAT 197 (437)
Q Consensus 179 ~~i~~~~-------------~~~~~~i~~SAT 197 (437)
..++... .+..+++++|||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3333221 145789999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.92 E-value=6.2e-24 Score=209.15 Aligned_cols=102 Identities=17% Similarity=0.256 Sum_probs=65.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEE--EcCCCCCCCCCCC----CCEE
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI--CTDVASRGLDIPS----VDMV 325 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv--~T~~~~~Gid~~~----~~~V 325 (437)
.++.+|||++|...++.+++.++. .. ...++.. .+|.++++.|+++. .||+ +|+.+++|+|+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 567899999999999999988865 23 3444443 46788999999865 6777 7899999999998 8899
Q ss_pred EEecCCCChh------------------------------hHHHHhhhcccCCCCceEEEEEcc
Q 013727 326 INYDIPTNSK------------------------------DYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 326 i~~~~p~s~~------------------------------~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
|+++.|.... .+.|.+||+.|...+--++++++.
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 9999985321 236999999998655334555543
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.91 E-value=1.9e-22 Score=199.35 Aligned_cols=309 Identities=14% Similarity=0.065 Sum_probs=196.8
Q ss_pred CCCCChHHHHHHHHhh----hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 013727 27 GWKTPSKIQAEAIPHA----LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (437)
Q Consensus 27 g~~~~~~~Q~~~~~~~----~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 102 (437)
|| ++||+|.+.+..+ ..++++++.+|||+|||++|++|++. .+.+++|++||++|+.|+.+++
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------------~~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------------VKPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------------HCSEEEEEESSGGGHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------------CCCeEEEEcCCHHHHHHHHHHH
Confidence 46 6999999977654 46899999999999999999999987 2457999999999999999999
Q ss_pred HHhhcCCCcEEEEEEcCCCh---------------------------------HHH------------------HHHhCC
Q 013727 103 EALGSGISLRCAVLVGGVDM---------------------------------MQQ------------------TLALGK 131 (437)
Q Consensus 103 ~~~~~~~~~~~~~~~g~~~~---------------------------------~~~------------------~~~~~~ 131 (437)
..+....++++..+.|.... ... ......
T Consensus 68 ~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 68 TKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 98876667888777663211 010 122234
Q ss_pred CCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccc--------------------------------------
Q 013727 132 RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-------------------------------------- 173 (437)
Q Consensus 132 ~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~-------------------------------------- 173 (437)
.++|||+|++.|++...+..........+|||||||++.+ -
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~ 226 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLRE 226 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999998876543311224677899999998755 1
Q ss_pred -----------------cHHHHHHH----------------------------HH-------------------------
Q 013727 174 -----------------FEKSLDEI----------------------------LN------------------------- 183 (437)
Q Consensus 174 -----------------~~~~~~~i----------------------------~~------------------------- 183 (437)
+...+..+ +.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~ 306 (551)
T 3crv_A 227 VVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISY 306 (551)
T ss_dssp SCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHH
T ss_pred HhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHH
Confidence 00000000 00
Q ss_pred ---hCCcc-ceEEEEeecCchHHHHHHHHhcCC-CcEE---EcccccccccCceEEEEEcc----CCCh---H---HHHH
Q 013727 184 ---VIPRM-RQTYLFSATMTKKVKKLQRACLKN-PVKI---EAASKYSTVDTLKQQYRFVP----AKYK---D---CYLV 245 (437)
Q Consensus 184 ---~~~~~-~~~i~~SAT~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~---~---~~~~ 245 (437)
.+... ..+|++|||+.+ ...+...+..+ +... ..... .+. ..+....++ ..+. . ..+.
T Consensus 307 ~l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~-spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~ 382 (551)
T 3crv_A 307 YLNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQ-KRV--SGSYECYIGVDVTSKYDMRSDNMWKRYA 382 (551)
T ss_dssp HHGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTT-SCC--SCEEEEEEECSCCCCTTTCCHHHHHHHH
T ss_pred HHHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecC-CcC--CCceEEEEeCCCCCccccCCHHHHHHHH
Confidence 01122 578999999987 44455544333 2210 00111 111 122222222 1111 1 1222
Q ss_pred HHHH---hcCCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEc--CCCCCCCCCC
Q 013727 246 YILT---EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICT--DVASRGLDIP 320 (437)
Q Consensus 246 ~~l~---~~~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T--~~~~~Gid~~ 320 (437)
..+. ...++.++||++|....+.+++. .+..+..-..+++ +...++.|+...-.||++| ..+++|||+|
T Consensus 383 ~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~ 456 (551)
T 3crv_A 383 DYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELR 456 (551)
T ss_dssp HHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCE
T ss_pred HHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccccccc
Confidence 2222 23567899999999999998862 3444444333444 3457778854445899998 6999999999
Q ss_pred ---C--CCEEEEecCCCCh-------------------h-----------hHHHHhhhcccCCCCceEEEEEcc
Q 013727 321 ---S--VDMVINYDIPTNS-------------------K-----------DYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 321 ---~--~~~Vi~~~~p~s~-------------------~-----------~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
+ ++.||..+.|... . .+.|.+||+-|...+.-++.+++.
T Consensus 457 d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 457 NNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp ETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred ccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 4 7889998877421 0 125899999998766445555544
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=5.3e-24 Score=193.05 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=124.9
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 109 (437)
.|+++|.++++.++.+.+.++++|||+|||++++.++...+.. ...++||++|+++|+.|+.+++++++...
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 7999999999999988889999999999999998877765542 34479999999999999999999997666
Q ss_pred CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCccc
Q 013727 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189 (437)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~ 189 (437)
...+..+.++..... ......+|+|+||+++.... ...+.++++||+||||++.+ ..+..++..+....
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~ 253 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCC
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCC
Confidence 677777777765432 22346899999999874421 12467789999999998864 36777778777788
Q ss_pred eEEEEeecCchHHHH
Q 013727 190 QTYLFSATMTKKVKK 204 (437)
Q Consensus 190 ~~i~~SAT~~~~~~~ 204 (437)
+++++|||+++....
T Consensus 254 ~~l~lSATp~~~~~~ 268 (282)
T 1rif_A 254 FKFGLSGSLRDGKAN 268 (282)
T ss_dssp EEEEECSSCCTTSTT
T ss_pred eEEEEeCCCCCcchH
Confidence 999999999865433
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=7e-23 Score=180.31 Aligned_cols=176 Identities=19% Similarity=0.234 Sum_probs=129.8
Q ss_pred HHhCCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 013727 23 CENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (437)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 102 (437)
++..+...++++|.++++.+..|+++++.||||||||+++.++++........ ....++++++|+++|+.|+.+.+
T Consensus 54 ~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~ 129 (235)
T 3llm_A 54 LQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERV 129 (235)
T ss_dssp HHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHH
Confidence 33333446899999999999999999999999999999888888876664321 13458999999999999999888
Q ss_pred HHhhc-CCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccc-cccccH-HHHH
Q 013727 103 EALGS-GISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL-LNDDFE-KSLD 179 (437)
Q Consensus 103 ~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~-~~~~~~-~~~~ 179 (437)
..... ..+..+........ .....+++|+|+||++|.+++.. .+.++++||+||+|++ ++.++. ..+.
T Consensus 130 ~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 130 AFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp HHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred HHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 76543 33333333221110 01124578999999999998875 4788999999999986 666776 4566
Q ss_pred HHHHhCCccceEEEEeecCchHHHHHHHHhcCCCc
Q 013727 180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV 214 (437)
Q Consensus 180 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 214 (437)
.++... +..|++++|||++... +...+...|.
T Consensus 201 ~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 201 DVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 666665 4678999999999875 6666655553
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.85 E-value=3.1e-20 Score=184.85 Aligned_cols=313 Identities=17% Similarity=0.169 Sum_probs=187.4
Q ss_pred CChHHHHHHHHhh----hcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 30 TPSKIQAEAIPHA----LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 30 ~~~~~Q~~~~~~~----~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
+||+.|.+.+..+ ..++++++.+|||+|||++|++|++.++.. .+.+++|++||++|+.|+.+++..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--------~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--------RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--------HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--------cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 5899999998644 568999999999999999999999998765 3457999999999999999999888
Q ss_pred hcCCCcEEEEEEcCCChHH-------------------------------------------------------------
Q 013727 106 GSGISLRCAVLVGGVDMMQ------------------------------------------------------------- 124 (437)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~------------------------------------------------------------- 124 (437)
....++++..+.|+...-.
T Consensus 75 ~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l 154 (620)
T 4a15_A 75 SSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEF 154 (620)
T ss_dssp HHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHH
T ss_pred hhccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHH
Confidence 6544566555544321000
Q ss_pred -------------HHHHhCCCCcEEEECchHHHHHHhcCCC---C-CCCCccEEEEccccccccc---------------
Q 013727 125 -------------QTLALGKRPHIVVATPGRLMDHLTNTKG---F-SLGTLKYLVLDEADRLLND--------------- 172 (437)
Q Consensus 125 -------------~~~~~~~~~~iiv~Tp~~l~~~l~~~~~---~-~~~~~~~vViDE~h~~~~~--------------- 172 (437)
..+.....+||||+++..|++...+... + ....-.+|||||||++.+.
T Consensus 155 ~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~ 234 (620)
T 4a15_A 155 YDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLN 234 (620)
T ss_dssp HHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHH
T ss_pred HHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHH
Confidence 0001112578999999877554322110 0 1234568999999964220
Q ss_pred -----------cc-------HHH-------HH-----------------------------------H-------HHH--
Q 013727 173 -----------DF-------EKS-------LD-----------------------------------E-------ILN-- 183 (437)
Q Consensus 173 -----------~~-------~~~-------~~-----------------------------------~-------i~~-- 183 (437)
.+ ... +. . +..
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 314 (620)
T 4a15_A 235 RADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYV 314 (620)
T ss_dssp HHHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH
Confidence 00 000 00 0 000
Q ss_pred -----------------------h---CC------------------------------ccceEEEEeecCchHHHHHHH
Q 013727 184 -----------------------V---IP------------------------------RMRQTYLFSATMTKKVKKLQR 207 (437)
Q Consensus 184 -----------------------~---~~------------------------------~~~~~i~~SAT~~~~~~~~~~ 207 (437)
. .. ....+|++|||+.+ ...+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~ 393 (620)
T 4a15_A 315 ENEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSD 393 (620)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHH
T ss_pred HhhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHH
Confidence 0 00 01245889999987 455554
Q ss_pred HhcCCCcEEEcccccccccCceEEEEEcc---CC---ChH---HH----HHHHHHhcCCCcEEEEecchHHHHHHHHHHH
Q 013727 208 ACLKNPVKIEAASKYSTVDTLKQQYRFVP---AK---YKD---CY----LVYILTEVSASSTMVFTRTCDATRLLALMLR 274 (437)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~---~~----~~~~l~~~~~~~~iVf~~s~~~~~~l~~~l~ 274 (437)
....+...+........ .+ +.....+ .. ... .. +..++.. .++.++||++|....+.+++.++
T Consensus 394 ~lGl~~~~~~~~spf~~-~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~ 469 (620)
T 4a15_A 394 ITGFEIPFKKIGEIFPP-EN--RYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VKKNTIVYFPSYSLMDRVENRVS 469 (620)
T ss_dssp HHCCCCCEEECCCCSCG-GG--EEEEEECCC-------CHHHHHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHTSSCC
T ss_pred HhCCCceeeecCCCCCH-HH--eEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHH
Confidence 44333333433332221 11 1111111 10 011 11 1222222 35679999999999999998886
Q ss_pred hcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC--CCCCCCCCCC--CCEEEEecCCCCh----------------
Q 013727 275 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD--VASRGLDIPS--VDMVINYDIPTNS---------------- 334 (437)
Q Consensus 275 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~--~~~~Gid~~~--~~~Vi~~~~p~s~---------------- 334 (437)
. .... ...+++..++..+++.|+ ++-.||++|. .+++|+|+|+ ++.||..+.|...
T Consensus 470 ~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~ 545 (620)
T 4a15_A 470 F--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKY 545 (620)
T ss_dssp S--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHH
T ss_pred h--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhh
Confidence 2 2222 455566778999999999 8889999974 9999999997 7789999888532
Q ss_pred -------------hhHHHHhhhcccCCCCceEEEEEcc
Q 013727 335 -------------KDYIHRVGRTARAGRTGVAISLVNQ 359 (437)
Q Consensus 335 -------------~~~~Q~~GR~~R~g~~g~~i~~~~~ 359 (437)
..+.|.+||+-|...+--++++++.
T Consensus 546 g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 546 GKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp SCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 0126999999998766444555543
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.84 E-value=1.7e-20 Score=164.81 Aligned_cols=138 Identities=20% Similarity=0.176 Sum_probs=108.7
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 109 (437)
.|+++|.++++.++.++++++++|||+|||.+++.++.. .+.+++|++|+++|+.|+.+.+.++
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~------------~~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE------------LSTPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH------------SCSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 689999999999999999999999999999998776554 2456999999999999999999884
Q ss_pred CcE-EEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCcc
Q 013727 110 SLR-CAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188 (437)
Q Consensus 110 ~~~-~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~ 188 (437)
++. +..+.|+.. ...+|+|+|++.+...... ....+++||+||+|++.+..+. .++..++ .
T Consensus 157 ~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~ 218 (237)
T 2fz4_A 157 GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-A 218 (237)
T ss_dssp CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-C
T ss_pred CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHH----HHHHhcc-C
Confidence 466 677776653 2578999999998765542 1245899999999998776554 3445554 5
Q ss_pred ceEEEEeecCchH
Q 013727 189 RQTYLFSATMTKK 201 (437)
Q Consensus 189 ~~~i~~SAT~~~~ 201 (437)
.+++++|||+...
T Consensus 219 ~~~l~LSATp~r~ 231 (237)
T 2fz4_A 219 PFRLGLTATFERE 231 (237)
T ss_dssp SEEEEEEESCC--
T ss_pred CEEEEEecCCCCC
Confidence 6789999999754
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.80 E-value=3e-19 Score=159.42 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=97.9
Q ss_pred cCCChHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhc-CCceEeccCCCCHHHHHHHHHHhhCC-Cce-EEEEc
Q 013727 236 PAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNL-GQRAIPISGHMSQSKRLGALNKFKAG-ECN-ILICT 310 (437)
Q Consensus 236 ~~~~~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-ilv~T 310 (437)
....|...+..++... .+.++||||++...+..+...|... |+.+..+||+++..+|..+++.|+++ .++ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4456777788888765 7889999999999999999999885 99999999999999999999999998 677 79999
Q ss_pred CCCCCCCCCCCCCEEEEecCCCChhhHHHHhhhcccCCCCceE--EEEEccc
Q 013727 311 DVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVA--ISLVNQY 360 (437)
Q Consensus 311 ~~~~~Gid~~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~--i~~~~~~ 360 (437)
+++++|+|++.+++||+||+||++..|.|++||++|.|+.+.+ +.++...
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999987654 4455444
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.98 E-value=8.1e-10 Score=109.92 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=92.6
Q ss_pred HHHHHHhC-CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH--HHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 013727 19 LVEACENV-GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA--FALPILQALLEIAENQRTVPAFFACVLSPTRELA 95 (437)
Q Consensus 19 ~~~~l~~~-g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~--~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 95 (437)
+...|... +-...+++|+.+++.++.++.+++.|++|||||.+ ++++.+..+.. ..+.++++++||..++
T Consensus 137 ~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-------~~~~~vll~APTg~AA 209 (608)
T 1w36_D 137 LAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-------GERCRIRLAAPTGKAA 209 (608)
T ss_dssp HHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-------SCCCCEEEEBSSHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-------cCCCeEEEEeCChhHH
Confidence 44455543 21223789999999999999999999999999954 44444433210 1456799999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCC-CcEEEECchHHHHHHhcCCCCCCCCccEEEEccccccccccc
Q 013727 96 IQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKR-PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDF 174 (437)
Q Consensus 96 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~ 174 (437)
.++.+.+...+...++..... ..... .... ..++-.+|+.. .+..... ....+++|||||++ |++
T Consensus 210 ~~L~e~~~~~~~~l~l~~~~~-~~~~~------~~~Tih~ll~~~~~~~--~~~~~~~-~~l~~d~lIIDEAs-ml~--- 275 (608)
T 1w36_D 210 ARLTESLGKALRQLPLTDEQK-KRIPE------DASTLHRLLGAQPGSQ--RLRHHAG-NPLHLDVLVVDEAS-MID--- 275 (608)
T ss_dssp HHHHHHHTHHHHHSSCCSCCC-CSCSC------CCBTTTSCC-------------CTT-SCCSCSEEEECSGG-GCB---
T ss_pred HHHHHHHHHHHhcCCCCHHHH-hccch------hhhhhHhhhccCCCch--HHHhccC-CCCCCCEEEEechh-hCC---
Confidence 999888776544333211000 00000 0000 11122222211 0111111 22368999999999 544
Q ss_pred HHHHHHHHHhCCccceEEEEeec
Q 013727 175 EKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 175 ~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
...+..++..++...|++++.-.
T Consensus 276 ~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 276 LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHhCCCCCEEEEEcch
Confidence 45677888888888888887544
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.53 E-value=4e-07 Score=89.62 Aligned_cols=125 Identities=15% Similarity=0.190 Sum_probs=79.2
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 109 (437)
.+++.|..++..+..++.+++.|++|||||.+. ..++..+.. .+.++++++||...+..+.+...
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~~~------ 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--------LGLEVGLCAPTGKAARRLGEVTG------ 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHHT------
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEecCcHHHHHHhHhhhc------
Confidence 589999999999999999999999999999763 333433332 55679999999988877665432
Q ss_pred CcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCccc
Q 013727 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189 (437)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~ 189 (437)
....++. ..+.. .|. .+.... .....+++|||||++++ + ...+..++..++...
T Consensus 254 -~~a~Tih---------~ll~~-------~~~----~~~~~~-~~~~~~dvlIIDEasml-~---~~~~~~Ll~~~~~~~ 307 (574)
T 3e1s_A 254 -RTASTVH---------RLLGY-------GPQ----GFRHNH-LEPAPYDLLIVDEVSMM-G---DALMLSLLAAVPPGA 307 (574)
T ss_dssp -SCEEEHH---------HHTTE-------ETT----EESCSS-SSCCSCSEEEECCGGGC-C---HHHHHHHHTTSCTTC
T ss_pred -ccHHHHH---------HHHcC-------Ccc----hhhhhh-cccccCCEEEEcCccCC-C---HHHHHHHHHhCcCCC
Confidence 1111110 00000 000 001111 13346789999999954 3 335667777777777
Q ss_pred eEEEEe
Q 013727 190 QTYLFS 195 (437)
Q Consensus 190 ~~i~~S 195 (437)
+++++.
T Consensus 308 ~lilvG 313 (574)
T 3e1s_A 308 RVLLVG 313 (574)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666653
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.52 E-value=6.5e-07 Score=89.53 Aligned_cols=70 Identities=20% Similarity=0.103 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 28 WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 28 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
+..+++.|.+++..++.+...++.||+|||||.+... ++..+... .+.++++++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~-------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS-------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc-------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 3468999999999998888899999999999987433 34444321 4567999999999999999888764
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.1e-06 Score=89.78 Aligned_cols=71 Identities=23% Similarity=0.244 Sum_probs=56.3
Q ss_pred CCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 28 WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 28 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
+..+++.|.+|+..++.+...+|.||+|||||.+... ++..+... .+.++++++||...+.++.+.+...+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 3457899999999998877889999999999987543 33444332 34579999999999999999888753
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.49 E-value=7.6e-07 Score=85.73 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=51.9
Q ss_pred HHhCCCCCChHHHHHHHHhhhcC-----CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 013727 23 CENVGWKTPSKIQAEAIPHALEG-----KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 97 (437)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~~~~~-----~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q 97 (437)
...+.|..|++-|++++..++.. ..+++.|++|||||.+. ..++..+... ....+++++||...+..
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-------~~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-------GETGIILAAPTHAAKKI 89 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCCEEEEESSHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------CCceEEEecCcHHHHHH
Confidence 34678899999999999977542 38999999999999753 3445555432 22368999999888776
Q ss_pred HHHHH
Q 013727 98 ISEQF 102 (437)
Q Consensus 98 ~~~~~ 102 (437)
+.+.+
T Consensus 90 l~~~~ 94 (459)
T 3upu_A 90 LSKLS 94 (459)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 66554
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.42 E-value=1.6e-06 Score=88.61 Aligned_cols=69 Identities=20% Similarity=0.114 Sum_probs=55.0
Q ss_pred CCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 29 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
..+++.|.+++..++.+...++.||+|||||.+.. .++..+... .+.++++++||...+.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 45799999999999888889999999999998743 344444421 3567999999999999998888754
No 100
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.41 E-value=3.9e-07 Score=91.69 Aligned_cols=68 Identities=24% Similarity=0.191 Sum_probs=54.3
Q ss_pred CChHHHHHHHHhhhcCC-cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 30 TPSKIQAEAIPHALEGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
.+.+.|.+|+..++..+ -.+|+||+|||||.+....+.+ +.. .+.++|+++||..-+.++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~-l~~--------~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQ-AVK--------QGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHH-HHH--------TTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHH-HHh--------CCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 47899999999988765 5789999999999885544443 333 56679999999999999998887653
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.40 E-value=2e-05 Score=79.50 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=54.4
Q ss_pred CCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 013727 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (437)
Q Consensus 29 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 106 (437)
..+++-|.+++.. ....++|.|++|||||.+.+.-+...+.... .+..++|++++|+..+.++.+.+....
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-----CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-----CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-----CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999983 3568999999999999875554444333211 134579999999999999999998774
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.78 E-value=0.00013 Score=67.63 Aligned_cols=71 Identities=8% Similarity=-0.006 Sum_probs=55.9
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
.|+|+|...+..+...+.+++..+-+.|||.+....++..+... ++..+++++|++..|..+.+.+..+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-------~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-------KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-------SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 68999999998775556789999999999987666555544321 566799999999999888877776653
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.71 E-value=0.00047 Score=68.38 Aligned_cols=147 Identities=11% Similarity=0.085 Sum_probs=88.0
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 109 (437)
.|+|+|...+..+...+.+++..+-|+|||.+....++..+... ++..++++.|+...+..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-------~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-------SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-------CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 48999999998875567799999999999987665555544432 45579999999999999888888776544
Q ss_pred C--cEEEEEEcCCChHHHHHHhCCCCcEEEEC--chHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhC
Q 013727 110 S--LRCAVLVGGVDMMQQTLALGKRPHIVVAT--PGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185 (437)
Q Consensus 110 ~--~~~~~~~g~~~~~~~~~~~~~~~~iiv~T--p~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~ 185 (437)
+ +.......... ...+..+..|.+.+ |+.+ ... +.+++|+||+|.+-+. ...+..+...+
T Consensus 236 p~~~~~~~~~~~~~----~i~~~nGs~i~~~s~~~~~l----rG~------~~~~~iiDE~~~~~~~--~~l~~~~~~~l 299 (592)
T 3cpe_A 236 PDFLQPGIVEWNKG----SIELDNGSSIGAYASSPDAV----RGN------SFAMIYIEDCAFIPNF--HDSWLAIQPVI 299 (592)
T ss_dssp CTTTSCCEEEECSS----EEEETTSCEEEEEECCHHHH----HHS------CCSEEEEETGGGCTTH--HHHHHHHHHHH
T ss_pred hHhhccccccCCcc----EEEecCCCEEEEEeCCCCCc----cCC------CcceEEEehhccCCch--hHHHHHHHHHh
Confidence 3 11100100000 01122344444433 3322 221 2678999999976442 23444444444
Q ss_pred Cc--cceEEEEeecCch
Q 013727 186 PR--MRQTYLFSATMTK 200 (437)
Q Consensus 186 ~~--~~~~i~~SAT~~~ 200 (437)
.. ..++ ++..|+..
T Consensus 300 ~~~~~~~i-i~isTP~~ 315 (592)
T 3cpe_A 300 SSGRRSKI-IITTTPNG 315 (592)
T ss_dssp SSSSCCEE-EEEECCCT
T ss_pred ccCCCceE-EEEeCCCC
Confidence 32 2333 44445443
No 104
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.70 E-value=0.00054 Score=61.23 Aligned_cols=123 Identities=17% Similarity=0.156 Sum_probs=88.2
Q ss_pred cCCChHHHHHHHHHhc--CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCCC
Q 013727 236 PAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA 313 (437)
Q Consensus 236 ~~~~~~~~~~~~l~~~--~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 313 (437)
....|...+..++... .+.+++||++.....+-+.+++...++....+.|.....++ + -.++.+.+.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECCC
Confidence 4566777777777654 56799999999999999999999999999999998544322 1 124556666667777
Q ss_pred CCCCC-----CCCCCEEEEecCCCChhhH-HHHhhhcccCC----CCceEEEEEccccHH
Q 013727 314 SRGLD-----IPSVDMVINYDIPTNSKDY-IHRVGRTARAG----RTGVAISLVNQYELE 363 (437)
Q Consensus 314 ~~Gid-----~~~~~~Vi~~~~p~s~~~~-~Q~~GR~~R~g----~~g~~i~~~~~~~~~ 363 (437)
+-|+| +...+.||.||..|++..= +|.+-|+.|.| +.-.++-++.....+
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 77786 6779999999999999874 99999998873 234566666655443
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.52 E-value=0.00034 Score=65.64 Aligned_cols=108 Identities=21% Similarity=0.183 Sum_probs=63.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (437)
+-.++.|+.|+|||... .+.+. ....+|++||++++..+.+.+...+..
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~~----------~~~~lVlTpT~~aa~~l~~kl~~~~~~----------------- 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRVN----------FEEDLILVPGRQAAEMIRRRANASGII----------------- 210 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHCC----------TTTCEEEESCHHHHHHHHHHHTTTSCC-----------------
T ss_pred cEEEEEcCCCCCHHHHH----HHHhc----------cCCeEEEeCCHHHHHHHHHHhhhcCcc-----------------
Confidence 34689999999999853 22221 123689999999999888877532110
Q ss_pred HHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeec
Q 013727 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 126 ~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
.....-|.|.++++ .+.........++|||||+- |.+.+ .+..++...+. .+++++.-+
T Consensus 211 -----~~~~~~V~T~dsfL---~~~~~~~~~~~d~liiDE~s-m~~~~---~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 -----VATKDNVRTVDSFL---MNYGKGARCQFKRLFIDEGL-MLHTG---CVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp -----CCCTTTEEEHHHHH---HTTTSSCCCCCSEEEEETGG-GSCHH---HHHHHHHHTTC-SEEEEEECT
T ss_pred -----ccccceEEEeHHhh---cCCCCCCCCcCCEEEEeCcc-cCCHH---HHHHHHHhCCC-CEEEEecCc
Confidence 01223467766653 22221222358899999999 44433 33334444443 445555433
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.50 E-value=0.00057 Score=56.41 Aligned_cols=30 Identities=33% Similarity=0.328 Sum_probs=21.6
Q ss_pred hHHHHHHHHhhh---------cCCcEEEEcCCCchHHHH
Q 013727 32 SKIQAEAIPHAL---------EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 32 ~~~Q~~~~~~~~---------~~~~~lv~~~tGsGKT~~ 61 (437)
.+.|.+++..+. .++.+++.||+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 344555555443 367899999999999975
No 107
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.40 E-value=0.00037 Score=59.43 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=50.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (437)
|.-.++.|++|+|||++.+- ++..+.. .+.+++++.|...- +....+....++..
T Consensus 12 G~i~litG~mGsGKTT~ll~-~~~r~~~--------~g~kVli~~~~~d~-----r~~~~i~srlG~~~----------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR-RLHRLEY--------ADVKYLVFKPKIDT-----RSIRNIQSRTGTSL----------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH-HHHHHHH--------TTCCEEEEEECCCG-----GGCSSCCCCCCCSS-----------
T ss_pred cEEEEEECCCCCcHHHHHHH-HHHHHHh--------cCCEEEEEEeccCc-----hHHHHHHHhcCCCc-----------
Confidence 45678899999999986433 3333332 45568888775421 00011122222110
Q ss_pred HHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccc
Q 013727 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL 169 (437)
Q Consensus 125 ~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~ 169 (437)
..+-+.+...++..+... ..-..+++||+||++.+
T Consensus 67 --------~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 --------PSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp --------CCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGS
T ss_pred --------cccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccC
Confidence 123345566666666542 12345899999999954
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.37 E-value=0.00022 Score=59.11 Aligned_cols=40 Identities=20% Similarity=0.097 Sum_probs=26.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~ 92 (437)
.++-.++.||+|+|||+..+- ++..+.. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~-~~~~~~~--------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS-FVEIYKL--------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH-HHHHHHH--------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHH-HHHHHHH--------CCCeEEEEeecc
Confidence 356678999999999986433 3333322 455688888873
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.28 E-value=0.00058 Score=56.78 Aligned_cols=40 Identities=15% Similarity=0.022 Sum_probs=27.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~ 92 (437)
.|+-.++.||+|||||++.+- ++..... .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~-~a~r~~~--------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIR-RIRRAKI--------AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHH-HHHHHHH--------TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHH-HHHHHHH--------CCCEEEEEEecc
Confidence 345678899999999976443 3333332 566789998873
No 110
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.19 E-value=0.00058 Score=69.05 Aligned_cols=81 Identities=19% Similarity=0.110 Sum_probs=59.1
Q ss_pred CChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcC-
Q 013727 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG- 108 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~- 108 (437)
.+++-|.+++... +.+++|.|+.|||||.+...-+...+.... ....++|+++.|+..+.++.+++......
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~ 74 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLGRK 74 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSCTT
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHcCcc
Confidence 4789999999863 578999999999999986555544443321 13456999999999999999999876432
Q ss_pred --CCcEEEEEE
Q 013727 109 --ISLRCAVLV 117 (437)
Q Consensus 109 --~~~~~~~~~ 117 (437)
.++.+.+++
T Consensus 75 ~~~~~~v~Tfh 85 (673)
T 1uaa_A 75 EARGLMISTFH 85 (673)
T ss_dssp TTTTSEEEEHH
T ss_pred cccCCEEEeHH
Confidence 235555543
No 111
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.06 E-value=0.0018 Score=54.35 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 93 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~ 93 (437)
|+-.++.|++|||||+..+-.+..+.. .+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~---------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF---------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH---------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH---------CCCEEEEEEeccC
Confidence 445678999999999874443333322 5677999998753
No 112
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0091 Score=53.72 Aligned_cols=17 Identities=18% Similarity=-0.103 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+.++++.||+|+|||.+
T Consensus 45 ~~~lli~GpPGTGKT~~ 61 (318)
T 3te6_A 45 NKLFYITNADDSTKFQL 61 (318)
T ss_dssp CCEEEEECCCSHHHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 36799999999999975
No 113
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.92 E-value=0.0016 Score=66.22 Aligned_cols=81 Identities=23% Similarity=0.247 Sum_probs=58.1
Q ss_pred CCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcC
Q 013727 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (437)
Q Consensus 29 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 108 (437)
..+++-|++++.. ...+++|.|+.|||||.+...-+...+.... ....++|+++.|+..+.++.+++..+...
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 4689999999986 3568999999999999985554444443211 13456999999999999999888776321
Q ss_pred --CCcEEEEE
Q 013727 109 --ISLRCAVL 116 (437)
Q Consensus 109 --~~~~~~~~ 116 (437)
.++.+.++
T Consensus 83 ~~~~~~v~Tf 92 (724)
T 1pjr_A 83 AAEDVWISTF 92 (724)
T ss_dssp GGTTSEEEEH
T ss_pred cccCcEEeeH
Confidence 23455443
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.86 E-value=0.00081 Score=53.53 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999974
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.81 E-value=0.005 Score=56.01 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999975
No 116
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.81 E-value=0.0019 Score=54.05 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=51.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (437)
|.-.++.|+.|||||...+-. +..... .+.+++++.|...-- ..-.......++..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~-~~r~~~--------~g~kvli~kp~~D~R----~~~~~I~Sr~G~~~----------- 83 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRR-LRRGIY--------AKQKVVVFKPAIDDR----YHKEKVVSHNGNAI----------- 83 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHH--------TTCCEEEEEEC---------------CBTTBCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHH-HHHHHH--------cCCceEEEEeccCCc----chhhhHHHhcCCce-----------
Confidence 456789999999999764433 333332 456689998865311 11112222222221
Q ss_pred HHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHH
Q 013727 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (437)
Q Consensus 125 ~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~ 182 (437)
..+.+..+..+.+.+ ..++++|+||||+ +++.+....+..+.
T Consensus 84 --------~a~~v~~~~di~~~i-------~~~~dvV~IDEaQ-Ff~~~~v~~l~~la 125 (219)
T 3e2i_A 84 --------EAINISKASEIMTHD-------LTNVDVIGIDEVQ-FFDDEIVSIVEKLS 125 (219)
T ss_dssp --------EEEEESSGGGGGGSC-------CTTCSEEEECCGG-GSCTHHHHHHHHHH
T ss_pred --------eeEEeCCHHHHHHHH-------hcCCCEEEEechh-cCCHHHHHHHHHHH
Confidence 123344433332211 2457899999999 55555556666655
No 117
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.75 E-value=0.016 Score=54.56 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=37.4
Q ss_pred CCCccEEEEccccccc---ccccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHh
Q 013727 155 LGTLKYLVLDEADRLL---NDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRAC 209 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~---~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 209 (437)
...+++||+|++-+.. +..+...+..+.....+..-++.++|+........+..+
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 3468999999998653 345566677777776666667788888765554554444
No 118
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.72 E-value=0.0036 Score=51.62 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT 91 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~ 91 (437)
++-.++.||+|||||.-.+- .+..... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~-~i~n~~~--------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMR-RVRRFQI--------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHH-HHHHHHH--------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHH-HHHHHHH--------cCCeEEEEccc
Confidence 56688999999999965333 3333222 45678898886
No 119
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.72 E-value=0.0052 Score=60.68 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=71.7
Q ss_pred CChHHHHHHHHhhhc--CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 30 TPSKIQAEAIPHALE--GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 30 ~~~~~Q~~~~~~~~~--~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
.+|.-|.+++..+.. ....++.|+-|.|||.+.-+ ++..+. ..++|.+|+.+=+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~-----------~~~~vtAP~~~a~~~l~~~~~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIA-----------GRAIVTAPAKASTDVLAQFAGE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSS-----------SCEEEECSSCCSCHHHHHHHGG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHH-----------hCcEEECCCHHHHHHHHHHhhC---
Confidence 578999999998886 34579999999999965333 333321 1368999998765543332211
Q ss_pred CCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccccHHHHHHHHHhCCc
Q 013727 108 GISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187 (437)
Q Consensus 108 ~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~ 187 (437)
.|-+..|+.+.. ...+.+++|||||=.+ -.+.+..++...+
T Consensus 240 --------------------------~i~~~~Pd~~~~--------~~~~~dlliVDEAAaI----p~pll~~ll~~~~- 280 (671)
T 2zpa_A 240 --------------------------KFRFIAPDALLA--------SDEQADWLVVDEAAAI----PAPLLHQLVSRFP- 280 (671)
T ss_dssp --------------------------GCCBCCHHHHHH--------SCCCCSEEEEETGGGS----CHHHHHHHHTTSS-
T ss_pred --------------------------CeEEeCchhhhh--------CcccCCEEEEEchhcC----CHHHHHHHHhhCC-
Confidence 033345655431 2335889999999955 4455666665332
Q ss_pred cceEEEEeecCc
Q 013727 188 MRQTYLFSATMT 199 (437)
Q Consensus 188 ~~~~i~~SAT~~ 199 (437)
.++||.|..
T Consensus 281 ---~v~~~tTv~ 289 (671)
T 2zpa_A 281 ---RTLLTTTVQ 289 (671)
T ss_dssp ---EEEEEEEBS
T ss_pred ---eEEEEecCC
Confidence 577777754
No 120
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.67 E-value=0.014 Score=52.93 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=25.3
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecC
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
...++|++||+|.+........+..+++..+...++++ +++.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~-~~n~ 145 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII-TANN 145 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE-EESS
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE-EeCC
Confidence 35789999999987623334445555555444554544 4443
No 121
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.63 E-value=0.0092 Score=52.71 Aligned_cols=17 Identities=24% Similarity=0.133 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999753
No 122
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.60 E-value=0.033 Score=47.01 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=23.6
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
....+||+||+|.+... ....+..++...+....+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45678999999976443 3344555556555545444443
No 123
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.48 E-value=0.0043 Score=66.96 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=54.2
Q ss_pred CCCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 26 ~g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
+++ .+++-|.+++..- +++++|.|..|||||.+.+--++..+.... ......+++++++|+..+..+.+++...
T Consensus 7 ~~~-~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~---~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 7 ADS-TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE---NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp ----CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS---SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC---CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 444 6899999999864 789999999999999985554444443211 1123457999999999999999888763
No 124
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.47 E-value=0.0036 Score=53.02 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=27.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~ 92 (437)
.|+-.++.|++|||||...+-.+..+.. .+.+++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~---------~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI---------AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT---------TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH---------CCCeEEEEeecC
Confidence 3566788999999999764433333322 566788888865
No 125
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.43 E-value=0.019 Score=50.91 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=33.3
Q ss_pred ccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHh--hhcCCcEEEEcCCCchHHHH
Q 013727 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPH--ALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~--~~~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+|+++.-.+...+.|...-.. + ....+.+.. +...+.+++.||+|+|||..
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVEL-P-LKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHH-H-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH-H-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 3445788888777777777653110 0 001112222 23456899999999999975
No 126
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.33 E-value=0.021 Score=54.19 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~ 62 (437)
...+++.||+|+|||..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999753
No 127
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.22 E-value=0.052 Score=51.05 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=66.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEc-C-cHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHH
Q 013727 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS-P-TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~-P-~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (437)
.+++.|++|+|||++..-.+ .++.. .+.+++++. . .+.-+ .+.++.++...++.+.....+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~--------~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~---- 165 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQK--------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEK---- 165 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHT--------TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCC----
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHH--------CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCC----
Confidence 57889999999998744322 23322 344455544 3 33322 3344455544455443221111
Q ss_pred HHHHhCCCCcEEEECchHHH-HHHhcCCCCCCCCccEEEEcccccccc-cccHHHHHHHHHhCCccceEEEEeecCchHH
Q 013727 125 QTLALGKRPHIVVATPGRLM-DHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKV 202 (437)
Q Consensus 125 ~~~~~~~~~~iiv~Tp~~l~-~~l~~~~~~~~~~~~~vViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 202 (437)
.|..+. +.+.. +....+++||+|.+=+... ......+..+.....+..-++.+.||.....
T Consensus 166 --------------dp~~i~~~al~~---a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a 228 (443)
T 3dm5_A 166 --------------DAIKLAKEGVDY---FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA 228 (443)
T ss_dssp --------------CHHHHHHHHHHH---HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH
T ss_pred --------------CHHHHHHHHHHH---HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH
Confidence 122221 11111 0112378899998865432 2344445555555555556777888876555
Q ss_pred HHHHHHh
Q 013727 203 KKLQRAC 209 (437)
Q Consensus 203 ~~~~~~~ 209 (437)
...+..+
T Consensus 229 ~~~a~~f 235 (443)
T 3dm5_A 229 YNQALAF 235 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 128
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.20 E-value=0.0085 Score=54.74 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=24.4
Q ss_pred ChHHHHHHHHhhh----cCC---cEEEEcCCCchHHHHHH
Q 013727 31 PSKIQAEAIPHAL----EGK---DLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 31 ~~~~Q~~~~~~~~----~~~---~~lv~~~tGsGKT~~~~ 63 (437)
+.|||.+++..+. +++ .+++.||+|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4678888876665 332 48999999999997543
No 129
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.08 E-value=0.026 Score=47.20 Aligned_cols=17 Identities=35% Similarity=0.266 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
+.+++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999753
No 130
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.06 E-value=0.015 Score=49.96 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.++.+++.||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 357899999999999975
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.06 E-value=0.023 Score=52.85 Aligned_cols=17 Identities=35% Similarity=0.192 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
+.+++.||+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 56999999999999753
No 132
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.03 E-value=0.039 Score=51.21 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.||+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46899999999999975
No 133
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.96 E-value=0.022 Score=44.69 Aligned_cols=20 Identities=15% Similarity=0.031 Sum_probs=16.7
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 013727 42 ALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~ 61 (437)
.....++++.||+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34567899999999999974
No 134
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.84 E-value=0.041 Score=44.94 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
...+++.||+|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 36799999999999975
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.80 E-value=0.056 Score=50.07 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999975
No 136
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.67 E-value=0.021 Score=51.36 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999753
No 137
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.66 E-value=0.01 Score=53.82 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=32.6
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhh-----hcCCcEEEEcCCCchHHHH
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHA-----LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~-----~~~~~~lv~~~tGsGKT~~ 61 (437)
..+-.+|+++.-.+.+.+.|+..=. .+.. .+.+ ...+.+++.||+|+|||..
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 3455678888877877777765311 1111 1111 1235799999999999975
No 138
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.61 E-value=0.037 Score=47.77 Aligned_cols=52 Identities=17% Similarity=0.103 Sum_probs=31.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
.|.-+++.||+|+|||...+- ++..+.. .+..++++... .-..++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~-~~~~~~~--------~~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQ-FLWNGLK--------MGEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHH-HHHHHHH--------TTCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHH-HHHHHHh--------cCCeEEEEEcc-CCHHHHHHHHHHc
Confidence 467889999999999975433 2222222 34456666543 2345565555544
No 139
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.56 E-value=0.36 Score=39.22 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
..+++.||+|+|||..
T Consensus 44 ~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAI 59 (195)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CceEEECCCCCCHHHH
Confidence 6799999999999975
No 140
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.53 E-value=0.11 Score=47.37 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=23.5
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
....+|++||+|.+... ....+..+++..+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 34679999999977543 2344555555555544454443
No 141
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.52 E-value=0.14 Score=46.88 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=26.8
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeec
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
.+.+++|+||+|. ++......+..+++..+....+++.|-.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 4577999999997 5555555666666766655555555443
No 142
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.48 E-value=0.037 Score=56.32 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=67.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-CCCCCCCCCCCCEEE
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMVI 326 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~Gid~~~~~~Vi 326 (437)
.+.+++|.++++..+...++.++.. ++.+..++|+++..++...+..+.+|..+|+|+|. .+...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 4678999999999888877776643 78999999999999999999999999999999997 445567888898888
Q ss_pred EecCC
Q 013727 327 NYDIP 331 (437)
Q Consensus 327 ~~~~p 331 (437)
.-...
T Consensus 496 IDEaH 500 (780)
T 1gm5_A 496 IDEQH 500 (780)
T ss_dssp EESCC
T ss_pred ecccc
Confidence 65543
No 143
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.46 E-value=0.014 Score=52.97 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=32.8
Q ss_pred cccccCccccCCCHHHHHHHHhCC---CCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 4 EKEVKTFKELGLRDELVEACENVG---WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g---~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
+.+-.+|++++=.+.+.+.|+..- +..+..++ ......+.+++.||+|+|||..
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC----TTCCCCSEEEEESSSSSCHHHH
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh----CCCCCCceEEEECCCCccHHHH
Confidence 345568999987777777775421 11111111 0011236799999999999975
No 144
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.18 Score=46.69 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=33.9
Q ss_pred ccccCccccCCCHHHHHHHHhC---CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 5 KEVKTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
.|-.+|++.+=-++..+.|+.. .+..|-.++..- +...+.+|+.||+|+|||+.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHH
Confidence 3456899988666666666542 233333333221 12236799999999999974
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.15 E-value=0.039 Score=51.31 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999975
No 146
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.10 E-value=0.044 Score=45.23 Aligned_cols=137 Identities=17% Similarity=0.092 Sum_probs=69.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH-HHHHHHHHHHHhhcCCCcEEEEEEcCCC---
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE-LAIQISEQFEALGSGISLRCAVLVGGVD--- 121 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~g~~~--- 121 (437)
-.+++..++|.|||.+++-.++..+- .+.+|+|+-=.+. ....-...++.+ ++.....-.+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g---------~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~ 95 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG---------HGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWET 95 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH---------TTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH---------CCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCC
Confidence 47899999999999998777777665 6777888732211 000001122222 122221111110
Q ss_pred -hHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEEEEcccccccccc--cHHHHHHHHHhCCccceEEEEeecC
Q 013727 122 -MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD--FEKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 122 -~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
........ ....+..... .+.-..+++||+||.-..+..+ -.+.+..++...+....+|+.+--+
T Consensus 96 ~~~~~~~~~----------a~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 96 QNREADTAA----------CMAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp GGHHHHHHH----------HHHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred CCcHHHHHH----------HHHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 00000000 0111121221 1233669999999997543322 2345666677666666666666666
Q ss_pred chHHHHHHH
Q 013727 199 TKKVKKLQR 207 (437)
Q Consensus 199 ~~~~~~~~~ 207 (437)
++.+...++
T Consensus 164 p~~l~e~AD 172 (196)
T 1g5t_A 164 HRDILDLAD 172 (196)
T ss_dssp CHHHHHHCS
T ss_pred cHHHHHhCc
Confidence 666655544
No 147
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.03 E-value=0.17 Score=45.66 Aligned_cols=42 Identities=26% Similarity=0.407 Sum_probs=24.6
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
....+||+||+|.+... ....+..+++..+....+++ +++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~-~~~~~ 150 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFIL-SCNYS 150 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEE-EESCG
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEE-EeCCc
Confidence 45678999999977543 23344555555555554444 44433
No 148
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.79 E-value=0.019 Score=52.79 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
+.+++.||+|+|||..
T Consensus 85 ~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCEEEECSTTSCHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 5799999999999975
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.65 E-value=0.37 Score=40.94 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999975
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.65 E-value=0.12 Score=49.15 Aligned_cols=52 Identities=19% Similarity=0.064 Sum_probs=29.4
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 013727 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 102 (437)
+..|.-+++.|++|+|||...+- +...+... .+..++|+...-. ..|+..++
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~-ia~~~~~~-------~g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALN-IAQNVATK-------TNENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHH-HHHHHHHH-------SSCCEEEEESSSC-HHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH-HHHHHHHh-------CCCcEEEEECCCC-HHHHHHHH
Confidence 33456789999999999975433 33333221 2335777654322 24444443
No 151
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.59 E-value=0.14 Score=43.61 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~ 62 (437)
.|.-+++.||+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4577899999999999753
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.38 E-value=0.43 Score=43.87 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=23.2
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeec
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 197 (437)
.....+||+||+|.+.... ...+...++..+... +++++++
T Consensus 117 ~~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~-~~Il~~~ 157 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHV-KFLLATT 157 (373)
T ss_dssp SSSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSE-EEEEEES
T ss_pred cCCeEEEEEECcchhcHHH-HHHHHHHHhcCCCce-EEEEEeC
Confidence 3456799999999775432 233444445444433 3444444
No 153
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.38 E-value=0.2 Score=46.57 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
.+.+++.||+|+|||..
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999975
No 154
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.27 E-value=0.098 Score=47.60 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
.++++.||+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5799999999999975
No 155
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.26 E-value=0.067 Score=51.39 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
.+.+++.||+|+|||..
T Consensus 238 ~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCcEEEECcCCCCHHHH
Confidence 46799999999999985
No 156
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.25 E-value=0.11 Score=49.43 Aligned_cols=50 Identities=22% Similarity=0.034 Sum_probs=28.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 102 (437)
.|.-+++.|++|+|||...+- +...+... .+..++|+..- .-..|+..++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~-ia~~~a~~-------~g~~vl~~slE-~~~~~l~~R~ 248 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALT-IAQNAALK-------EGVGVGIYSLE-MPAAQLTLRM 248 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHH-HHHHHHHT-------TCCCEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHHh-------CCCeEEEEECC-CCHHHHHHHH
Confidence 446789999999999965433 33333221 23457776543 2234555544
No 157
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.21 E-value=0.064 Score=50.99 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
.+.+++.||+|+|||..
T Consensus 167 ~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 36799999999999975
No 158
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.19 E-value=0.18 Score=47.24 Aligned_cols=80 Identities=13% Similarity=0.143 Sum_probs=65.3
Q ss_pred cCCCcEEEEecchHHHHHHHHHHHh---cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-C---CCCCCCCCCC
Q 013727 251 VSASSTMVFTRTCDATRLLALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-A---SRGLDIPSVD 323 (437)
Q Consensus 251 ~~~~~~iVf~~s~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~---~~Gid~~~~~ 323 (437)
..+.++||.++++..+..+++.++. .++.+..++|+.+..++......+..|..+|+|+|+- + -.-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567899999999999999999988 4779999999999999988899999999999999972 2 1125556788
Q ss_pred EEEEecC
Q 013727 324 MVINYDI 330 (437)
Q Consensus 324 ~Vi~~~~ 330 (437)
+||.-..
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8875443
No 159
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=94.15 E-value=0.26 Score=47.04 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=40.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 107 (437)
.+....+.+-||||||++. +.+... .+..+|||+|+...|.|+++.++.|..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~-----a~l~~~-------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV-----AEIAER-------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH-----HHHHHH-------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHH-----HHHHHH-------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 4567899999999999852 222221 334589999999999999999999864
No 160
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.11 E-value=0.12 Score=49.00 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
.++++.||+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 4699999999999975
No 161
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.63 E-value=0.31 Score=43.72 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=22.6
Q ss_pred CccEEEEcccccccccccHHHHHHHHHhCCccceEEEEe
Q 013727 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (437)
Q Consensus 157 ~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 195 (437)
...+||+||+|.+.... ...+..+++..+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 46789999999875432 233444555544445444444
No 162
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.51 E-value=0.23 Score=42.47 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~ 63 (437)
.|.-+++.||+|+|||....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 45778999999999997543
No 163
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.51 E-value=0.31 Score=47.19 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=24.4
Q ss_pred CCccEEEEccccccccccc--HHHHHHHHHhCCccceEEEEeecC
Q 013727 156 GTLKYLVLDEADRLLNDDF--EKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
....+|++||+|.+..... ...+..++... ...+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 3467899999998765322 23444444442 33466666653
No 164
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.42 E-value=0.14 Score=56.95 Aligned_cols=46 Identities=20% Similarity=0.093 Sum_probs=31.9
Q ss_pred HHhhhc------CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 013727 39 IPHALE------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 93 (437)
Q Consensus 39 ~~~~~~------~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~ 93 (437)
++.++. ++.+++.||+|+|||..+...+.+... .+.+++++...-.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~---------~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---------TTCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEEEcccc
Confidence 666665 578999999999999875544443332 5566788776533
No 165
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.41 E-value=0.26 Score=44.07 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=24.5
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccceEEEEeecC
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
....+++|+||+|.|..... ..+...++.-++.. ++++.++-
T Consensus 80 ~~~~kvviIdead~lt~~a~-naLLk~LEep~~~t-~fIl~t~~ 121 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAA-NAFLKALEEPPEYA-VIVLNTRR 121 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHH-HHTHHHHHSCCTTE-EEEEEESC
T ss_pred cCCceEEEeccHHHhCHHHH-HHHHHHHhCCCCCe-EEEEEECC
Confidence 35678999999998765433 33444555444444 34444443
No 166
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.28 E-value=0.073 Score=48.69 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=28.2
Q ss_pred HHHhhhc------CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 013727 38 AIPHALE------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT 91 (437)
Q Consensus 38 ~~~~~~~------~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~ 91 (437)
.++.++. |.-+++.||+|+|||...+..+.. +.. .+..++|+...
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~-~~~--------~g~~vlyi~~E 98 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN-AQA--------AGGIAAFIDAE 98 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH-HHH--------TTCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH-HHh--------CCCeEEEEECC
Confidence 4555555 467899999999999764433333 222 34457777543
No 167
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.01 E-value=0.44 Score=43.30 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=24.3
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEE
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 194 (437)
...+++|+||+|.+... ....+..+++..+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 34789999999977543 334455666666555544443
No 168
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=93.01 E-value=0.19 Score=40.66 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=42.5
Q ss_pred ChHHHHHHHHhhhcC--CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 013727 31 PSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 97 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q 97 (437)
..+-|..++..+... +-.++.++-|++||...+..++....+ .+.++.+++|+..-...
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--------~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--------QGREVQIIAADRRSQMN 95 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--------TTCCEEEECSTTHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--------cCeEEEEEcCchHHHHH
Confidence 346788888888654 457889999999998854444333332 77889999999765444
No 169
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.93 E-value=0.049 Score=47.09 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=26.7
Q ss_pred CCccEEEEcccccccc-----cccHHHHHHHHHhCCccceEEEEeecCc
Q 013727 156 GTLKYLVLDEADRLLN-----DDFEKSLDEILNVIPRMRQTYLFSATMT 199 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~-----~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 199 (437)
.+.+++|+||.-..++ ......+..++..+......++++.-..
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~ 182 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4577899999987765 3444446666655543333555555443
No 170
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.91 E-value=0.14 Score=46.27 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
...+++.||+|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36899999999999975
No 171
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.90 E-value=0.079 Score=41.52 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~ 61 (437)
..+.++++.||+|+|||..
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4567899999999999975
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.84 E-value=0.19 Score=45.04 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
++++.||+|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 599999999999975
No 173
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.84 E-value=1.5 Score=38.76 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~ 63 (437)
++.+.+.++.|+|||....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SEEEEEECCTTTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567778999999997643
No 174
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.81 E-value=0.2 Score=48.86 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.||+|+|||..
T Consensus 108 g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSL 124 (543)
T ss_dssp SCEEEEESSSSSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56899999999999974
No 175
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.76 E-value=0.14 Score=47.14 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=28.7
Q ss_pred HHHhhhc------CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 013727 38 AIPHALE------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (437)
Q Consensus 38 ~~~~~~~------~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~ 92 (437)
.++.++. |.-+++.|++|+|||...+. ++..+.. .+..++|+....
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~-la~~~~~--------~g~~vlyi~~E~ 112 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALA-IVAQAQK--------AGGTCAFIDAEH 112 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHH-HHHHHHH--------TTCCEEEEESSC
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHH-HHHHHHH--------CCCeEEEEECCC
Confidence 4555554 36789999999999975443 3333332 344577776543
No 176
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.75 E-value=1.3 Score=41.21 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.7
Q ss_pred CcEEE--EcCCCchHHHH
Q 013727 46 KDLIG--LAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv--~~~tGsGKT~~ 61 (437)
..+++ .||+|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 46788 89999999975
No 177
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.74 E-value=1.2 Score=35.38 Aligned_cols=75 Identities=9% Similarity=0.214 Sum_probs=54.4
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
...++||.|+++.-+..++..+... ++.+..++|+.+.......+ ....+|+|+|. .+. .++++.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~ 97 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQ 97 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCcc
Confidence 4457999999999999999988875 46788899988765443332 34678999992 222 346788
Q ss_pred CccEEEEccc
Q 013727 157 TLKYLVLDEA 166 (437)
Q Consensus 157 ~~~~vViDE~ 166 (437)
.+++||.-+.
T Consensus 98 ~~~~Vi~~~~ 107 (165)
T 1fuk_A 98 QVSLVINYDL 107 (165)
T ss_dssp SCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 8888887443
No 178
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.62 E-value=1.2 Score=37.12 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=54.1
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
.+.++||.|+++.-++.+++.+... ++.+..++|+.+...+...+ ....+|+|+|. .+. .++++.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~ 98 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA--RGLDIP 98 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT--CSSSCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh--cCCCCc
Confidence 4567999999999999999988876 47788899998765544333 34678999992 233 346888
Q ss_pred CccEEEE
Q 013727 157 TLKYLVL 163 (437)
Q Consensus 157 ~~~~vVi 163 (437)
.+++||.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 8998884
No 179
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.50 E-value=0.11 Score=47.55 Aligned_cols=48 Identities=23% Similarity=0.139 Sum_probs=30.0
Q ss_pred HHHHhhhc------CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 013727 37 EAIPHALE------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 93 (437)
Q Consensus 37 ~~~~~~~~------~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~ 93 (437)
..++.++. |.-+++.||+|+|||... +.++..+.. .+..++|+.....
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLa-l~la~~~~~--------~gg~VlyId~E~s 100 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLA-LHAIAEAQK--------MGGVAAFIDAEHA 100 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHH-HHHHHHHHH--------TTCCEEEEESSCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHH-HHHHHHHHh--------cCCeEEEEecccc
Confidence 34566665 356899999999999753 334333332 3455777765443
No 180
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=92.41 E-value=3.3 Score=32.69 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=54.9
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
...++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+. .++++.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gld~~ 102 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA--RGIDIE 102 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--TTCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCchh
Confidence 4457999999999999999998875 47788899987765443322 34678999992 232 346888
Q ss_pred CccEEEEccc
Q 013727 157 TLKYLVLDEA 166 (437)
Q Consensus 157 ~~~~vViDE~ 166 (437)
.+++||.-..
T Consensus 103 ~~~~Vi~~~~ 112 (163)
T 2hjv_A 103 NISLVINYDL 112 (163)
T ss_dssp CCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 8998886444
No 181
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.38 E-value=4.4 Score=36.48 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=24.3
Q ss_pred ccEEEEcccccccc---cccHHHHHHHHHhCCccceEEEEeecC
Q 013727 158 LKYLVLDEADRLLN---DDFEKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 158 ~~~vViDE~h~~~~---~~~~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
--+||+||+|.+.. ..+...+..+....+ .. .++++++.
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~i~~g~~ 179 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RI-KFIMSGSE 179 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TE-EEEEEESS
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCC-Ce-EEEEEcCc
Confidence 34799999998764 456666666666543 23 34555553
No 182
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.32 E-value=0.12 Score=46.78 Aligned_cols=55 Identities=20% Similarity=0.039 Sum_probs=32.6
Q ss_pred HHhhhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 013727 39 IPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (437)
Q Consensus 39 ~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 103 (437)
+.-+..|.-+++.|++|+|||...+- +...+.. .+..++|+..- .-..|+..++.
T Consensus 40 ~gGl~~G~LiiIaG~pG~GKTt~al~-ia~~~a~--------~g~~Vl~fSlE-ms~~ql~~Rll 94 (338)
T 4a1f_A 40 TSGFNKGSLVIIGARPSMGKTSLMMN-MVLSALN--------DDRGVAVFSLE-MSAEQLALRAL 94 (338)
T ss_dssp HCSBCTTCEEEEEECTTSCHHHHHHH-HHHHHHH--------TTCEEEEEESS-SCHHHHHHHHH
T ss_pred hcCCCCCcEEEEEeCCCCCHHHHHHH-HHHHHHH--------cCCeEEEEeCC-CCHHHHHHHHH
Confidence 33344556799999999999975443 3333322 44567777553 23455555543
No 183
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.29 E-value=0.96 Score=36.41 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=53.7
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
...++||.|+++..+..++..+... ++.+..++|+.+.......+ ....+|+|+|. .+. .++++.
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~Gid~~ 101 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCA--RGIDVK 101 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCC--TTTCCT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chh--cCCCcc
Confidence 4567999999999999998888764 57788899988765544332 34678999993 222 346888
Q ss_pred CccEEEEc
Q 013727 157 TLKYLVLD 164 (437)
Q Consensus 157 ~~~~vViD 164 (437)
.+++||.-
T Consensus 102 ~~~~Vi~~ 109 (175)
T 2rb4_A 102 QVTIVVNF 109 (175)
T ss_dssp TEEEEEES
T ss_pred cCCEEEEe
Confidence 89988853
No 184
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.25 E-value=0.074 Score=49.96 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=37.9
Q ss_pred ccccccCccccCCCHHHHHHHHhC---CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 3 EEKEVKTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 3 ~~~~~~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
+++|-.+|+..+--++..+.|+.. .+..|..++..-+ ...+.+|+.||+|+|||+.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 345667899999888888777642 3333444433221 1236799999999999974
No 185
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.99 E-value=0.61 Score=39.14 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=55.2
Q ss_pred CCcEEEEecchHHHHHHHHHHHhc-----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-C-----CCCCCCCC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-A-----SRGLDIPS 321 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~Gid~~~ 321 (437)
+.++||.++++..+..+++.++.. +..+..++|+.+..+.... +..+..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 347999999999999988888765 6788899999887665443 44567799999962 1 23467778
Q ss_pred CCEEEEec
Q 013727 322 VDMVINYD 329 (437)
Q Consensus 322 ~~~Vi~~~ 329 (437)
++++|.-.
T Consensus 159 ~~~lViDE 166 (220)
T 1t6n_A 159 IKHFILDE 166 (220)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcC
Confidence 88887543
No 186
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.88 E-value=1.1 Score=36.68 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=53.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCCC
Q 013727 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGT 157 (437)
Q Consensus 82 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 157 (437)
+.++||.|+++.-+..++..+... ++.+..++|+.+.......+ ....+|+|+| +.+.. ++++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~--Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK--GLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT--TCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc--CCCccc
Confidence 346999999999999999998876 47788899988765443332 2357899999 33333 468888
Q ss_pred ccEEEEcc
Q 013727 158 LKYLVLDE 165 (437)
Q Consensus 158 ~~~vViDE 165 (437)
+++||.-+
T Consensus 123 v~~VI~~d 130 (191)
T 2p6n_A 123 IQHVINYD 130 (191)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 99888643
No 187
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=91.84 E-value=0.73 Score=45.41 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=54.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHh--hCCCceEEEEcC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF--KAGECNILICTD 311 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~ilv~T~ 311 (437)
..+.+||.++++..+....+.|...|+.+..++|+++..++..++..+ ..+..+|+++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 356899999999999999999999999999999999999998888888 578899999998
No 188
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.75 E-value=0.67 Score=49.56 Aligned_cols=79 Identities=18% Similarity=0.153 Sum_probs=65.6
Q ss_pred cCCCcEEEEecchHHHHHHHHHHHh----cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-CCCCCCCCCCCCEE
Q 013727 251 VSASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMV 325 (437)
Q Consensus 251 ~~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~Gid~~~~~~V 325 (437)
..+.+++|.+++...+...++.+.. .+..+..+++..+..++...+..+..|..+|+|+|. .+...+++.++.+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 3567899999999999888877764 357788999999999999999999999999999996 55666888888887
Q ss_pred EEec
Q 013727 326 INYD 329 (437)
Q Consensus 326 i~~~ 329 (437)
|.-.
T Consensus 730 IiDE 733 (1151)
T 2eyq_A 730 IVDE 733 (1151)
T ss_dssp EEES
T ss_pred EEec
Confidence 7533
No 189
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.58 E-value=1.3 Score=35.47 Aligned_cols=76 Identities=9% Similarity=0.105 Sum_probs=54.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
...++||.|+++.-+..++..+... ++.+..++|+.+.......+ ....+|+|+|.- +. .++++.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~--~Gldi~ 98 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIE 98 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS--TTCCGG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hh--cCcchh
Confidence 3456999999999999999998875 47788899988765543332 346789999931 22 346788
Q ss_pred CccEEEEcccc
Q 013727 157 TLKYLVLDEAD 167 (437)
Q Consensus 157 ~~~~vViDE~h 167 (437)
.+++||.-+..
T Consensus 99 ~~~~Vi~~d~p 109 (172)
T 1t5i_A 99 RVNIAFNYDMP 109 (172)
T ss_dssp GCSEEEESSCC
T ss_pred hCCEEEEECCC
Confidence 88888864433
No 190
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.52 E-value=0.32 Score=51.72 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=65.5
Q ss_pred cCCCcEEEEecchHHHHHHHHHHHh---cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-C----CCCCCCCCC
Q 013727 251 VSASSTMVFTRTCDATRLLALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-A----SRGLDIPSV 322 (437)
Q Consensus 251 ~~~~~~iVf~~s~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~----~~Gid~~~~ 322 (437)
..+.++||.+++++.+..+++.++. .++.+..+||+++..++...+..+..|..+|+|+|+- + .. +++.++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCc
Confidence 3567899999999999999999998 4678999999999999999999999999999999972 2 22 456678
Q ss_pred CEEEEecC
Q 013727 323 DMVINYDI 330 (437)
Q Consensus 323 ~~Vi~~~~ 330 (437)
++||.-..
T Consensus 198 ~~lViDEa 205 (1104)
T 4ddu_A 198 DFVFVDDV 205 (1104)
T ss_dssp SEEEESCH
T ss_pred CEEEEeCC
Confidence 88886443
No 191
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.07 E-value=0.33 Score=43.27 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=50.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHH
Q 013727 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 126 (437)
.+++.+|+|+|||...+- ++....... .+..++|+.....+... .+++++...
T Consensus 30 iteI~G~pGsGKTtL~Lq-~~~~~~~~g------~g~~vlyId~E~s~~~~---ra~~lGvd~----------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLT-MVSSYMRQY------PDAVCLFYDSEFGITPA---YLRSMGVDP----------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHH-HHHHHHHHC------TTCEEEEEESSCCCCHH---HHHHTTCCG-----------------
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHhcC------CCceEEEEeccchhhHH---HHHHhCCCH-----------------
Confidence 589999999999976443 333333211 25678888765555322 355554221
Q ss_pred HHhCCCCcEEEECchHHHHH----HhcCCCCCCCCccEEEEccccccc
Q 013727 127 LALGKRPHIVVATPGRLMDH----LTNTKGFSLGTLKYLVLDEADRLL 170 (437)
Q Consensus 127 ~~~~~~~~iiv~Tp~~l~~~----l~~~~~~~~~~~~~vViDE~h~~~ 170 (437)
.++++..|..+-+. +.....+.-..+++||+|-+..+.
T Consensus 83 ------d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ------ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ------GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ------HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 12444444333222 111101223468999999999775
No 192
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.06 E-value=1.9 Score=37.07 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=54.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-----C--CCCCCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-----A--SRGLDIP 320 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~--~~Gid~~ 320 (437)
.+.++||.++++..+..+++.++.. +..+..++|+.+..+....+. +..+|+|+|.- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 4567999999999998888777654 788889999887665544332 46799999961 1 2457788
Q ss_pred CCCEEEEe
Q 013727 321 SVDMVINY 328 (437)
Q Consensus 321 ~~~~Vi~~ 328 (437)
+++++|.-
T Consensus 186 ~~~~lViD 193 (249)
T 3ber_A 186 ALKYLVMD 193 (249)
T ss_dssp TCCEEEEC
T ss_pred ccCEEEEc
Confidence 88888753
No 193
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.74 E-value=0.85 Score=44.20 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=55.1
Q ss_pred CCcEEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 311 (437)
.+.+||.++++..+....+.|+..++.+..++++.+..++..+...+..|..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46899999999999999999999999999999999999999999999999999999996
No 194
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.59 E-value=0.33 Score=49.38 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=33.1
Q ss_pred cccCccccCCCHHHHHHHHhC---CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 6 EVKTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
+..+|+..+.-+++.+.|+.. .+..|..++.. .+...+.+|+.||+|+|||+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCchHH
Confidence 445788888888888887653 22222222110 011236799999999999974
No 195
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.48 E-value=0.41 Score=42.82 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~ 63 (437)
++++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997543
No 196
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.17 E-value=0.23 Score=43.28 Aligned_cols=20 Identities=25% Similarity=0.219 Sum_probs=16.9
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 013727 42 ALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~ 61 (437)
+..|..+++.||||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45677899999999999975
No 197
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.03 E-value=1.1 Score=38.16 Aligned_cols=73 Identities=11% Similarity=0.149 Sum_probs=54.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHh----cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-----CC-CCCCCCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VA-SRGLDIPS 321 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~-~~Gid~~~ 321 (437)
.+..+||.+++++.+..+++.++. .+..+..++|+.+..+....+.. ..+|+|+|+ .+ ...+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999999888777665 47888999999887776555443 479999996 22 23457778
Q ss_pred CCEEEEe
Q 013727 322 VDMVINY 328 (437)
Q Consensus 322 ~~~Vi~~ 328 (437)
++++|.-
T Consensus 177 ~~~lViD 183 (242)
T 3fe2_A 177 TTYLVLD 183 (242)
T ss_dssp CCEEEET
T ss_pred ccEEEEe
Confidence 8888753
No 198
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.01 E-value=0.18 Score=47.48 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=35.5
Q ss_pred cccccCccccCCCHHHHHHHHhC---CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 4 EKEVKTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
+.|-.+|++.+=-+++.+.|+.. .+..|-.++..- +...+.+|+.||+|+|||+.
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 45556899998888888777653 222222222111 12346899999999999974
No 199
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.98 E-value=0.21 Score=46.86 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=18.7
Q ss_pred HHHHHHhhh--cCCcEEEEcCCCchHHHH
Q 013727 35 QAEAIPHAL--EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 35 Q~~~~~~~~--~~~~~lv~~~tGsGKT~~ 61 (437)
+..++..+. .+.-+++.||||||||+.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 344444443 344689999999999974
No 200
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.98 E-value=2.7 Score=37.84 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=31.6
Q ss_pred ccEEEEcccccccc-cccHHHHHHHHHhCCccceEEEEeecCchHHHHHHHHh
Q 013727 158 LKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRAC 209 (437)
Q Consensus 158 ~~~vViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 209 (437)
.+++++|.+.+... ......+..+...+.+...++.+.++...........+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 56788998875432 34445566565555566667777777665555544433
No 201
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.96 E-value=0.44 Score=39.51 Aligned_cols=46 Identities=15% Similarity=0.005 Sum_probs=30.6
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHhhhcC----CcEEEEcCCCchHHHHH
Q 013727 15 LRDELVEACENVGWKTPSKIQAEAIPHALEG----KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 15 l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~----~~~lv~~~tGsGKT~~~ 62 (437)
--..|.+.|+-.|+ .+-.+ ...+..++.+ +.+++.||+|+|||..+
T Consensus 26 ~w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 26 DWRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp CSHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred CHHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 33466777776665 35555 4555555554 35899999999999753
No 202
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.95 E-value=0.45 Score=48.37 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
+.+|+.||+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999974
No 203
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.80 E-value=0.32 Score=46.91 Aligned_cols=40 Identities=18% Similarity=-0.065 Sum_probs=26.5
Q ss_pred HHHHHhCCCCCChHHHHHHHHh-hhcCCcEEEEcCCCchHHHH
Q 013727 20 VEACENVGWKTPSKIQAEAIPH-ALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 20 ~~~l~~~g~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~ 61 (437)
...|.+.|. +++.+..-+.. +..|..+++.||||||||+.
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344556674 33444444443 34678899999999999974
No 204
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.65 E-value=0.22 Score=46.85 Aligned_cols=54 Identities=24% Similarity=0.248 Sum_probs=33.4
Q ss_pred ccccCccccCCCHHHHHHHHhC---CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 5 KEVKTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
.|-.+|++.+=-++..+.|+.. .+..|-.++..- +...+.+|+.||+|+|||+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHH
Confidence 4556799998666666666542 222233222211 11236799999999999975
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.47 E-value=0.18 Score=45.04 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=32.7
Q ss_pred ccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHH-hhhcCCcEEEEcCCCchHHHH
Q 013727 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIP-HALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~-~~~~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+|++++-.+.+.+.|+..-. .|-.+...... .+..++.+++.||+|+|||..
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 345678888877777766654310 01001111111 123457799999999999975
No 206
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.46 E-value=0.39 Score=45.43 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=31.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 96 (437)
...++++.|+||||||.. +..++..+.. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~--------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLL--------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHH--------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHH--------CCCcEEEEeCCCchhH
Confidence 347899999999999986 3344444443 4566888888877754
No 207
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.34 E-value=0.81 Score=41.80 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+++.||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 345789999999999974
No 208
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=89.29 E-value=3 Score=40.64 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=57.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
.+.++||.|+++.-+..++..+..... .++.+..++|+.........+ ....+|+|||. .+.. ++++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~--GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR--GMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS--SCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhc--CCCcc
Confidence 566899999999999999999987643 257788889988765543332 24688999993 3333 46888
Q ss_pred CccEEEEccc
Q 013727 157 TLKYLVLDEA 166 (437)
Q Consensus 157 ~~~~vViDE~ 166 (437)
++++||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 8998885543
No 209
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.21 E-value=1.7 Score=38.99 Aligned_cols=54 Identities=9% Similarity=-0.114 Sum_probs=32.3
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
+..|.-+++.|++|+|||...+- +...+.. .+..++|+..- .-..|+..++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~-ia~~~a~--------~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALK-QAKNMSD--------NDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHH-HHHHHHT--------TTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH-HHHHHHH--------cCCeEEEEECC-CCHHHHHHHHHHH
Confidence 44457799999999999965333 3333221 23457777643 3345555555443
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.04 E-value=0.7 Score=47.87 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
.++++.||+|+|||..
T Consensus 192 ~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCEEEECTTSCHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 5799999999999974
No 211
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.91 E-value=1.3 Score=45.17 Aligned_cols=16 Identities=44% Similarity=0.453 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHH
Q 013727 47 DLIGLAQTGSGKTGAF 62 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~ 62 (437)
++++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999753
No 212
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.84 E-value=0.37 Score=40.33 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=27.9
Q ss_pred CCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 28 WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 28 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
+..-+..|..++..+..|.-+.+.||.|||||+.
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3344556778888888899999999999999974
No 213
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.78 E-value=0.82 Score=39.68 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHhhhcCC-----cEEEEcCCCchHHHHHH
Q 013727 17 DELVEACENVGWKTPSKIQAEAIPHALEGK-----DLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 17 ~~~~~~l~~~g~~~~~~~Q~~~~~~~~~~~-----~~lv~~~tGsGKT~~~~ 63 (437)
..+.+.|+-.|++ |-.+- .++..++.++ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~-~~~~~-~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD-PQYAA-SVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC-HHHHH-HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC-HHHHH-HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4788889889985 43332 2344444442 48999999999998543
No 214
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.17 E-value=0.28 Score=42.10 Aligned_cols=52 Identities=21% Similarity=0.180 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
|.-+++.|++|+|||...+-.+.+.+.. .+..++|+.-. +-..++.+.+..+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~--------~~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE--------YGEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH--------HCCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCCceeeccc-CCHHHHHHHHHHc
Confidence 4678999999999997543333333332 23346666533 3345566665544
No 215
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=88.05 E-value=1.4 Score=39.13 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=54.1
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
.+.++||.|+++.-++.++..+... ++.+..++|+.+...+...+ ....+|+|+|. .+.. ++++.
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~--Gidi~ 95 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAAR--GLDIP 95 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTC--STTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhc--Ccccc
Confidence 4557999999999988888887664 57888999987765544333 23578999993 2333 46888
Q ss_pred CccEEEEccc
Q 013727 157 TLKYLVLDEA 166 (437)
Q Consensus 157 ~~~~vViDE~ 166 (437)
.+++||.=+.
T Consensus 96 ~v~~VI~~d~ 105 (300)
T 3i32_A 96 QVDLVVHYRM 105 (300)
T ss_dssp CCSEEEESSC
T ss_pred ceeEEEEcCC
Confidence 8998885333
No 216
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=87.90 E-value=5.5 Score=39.01 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=57.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
.+.++||.|+++.-++.+++.+..... .++.+..++|+.........+ ....+|+|+|. .+.. ++++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~--GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR--GMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS--SCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc--CCCcc
Confidence 566899999999999999999987643 257788889988765543332 24678999993 3333 47888
Q ss_pred CccEEEEcccc
Q 013727 157 TLKYLVLDEAD 167 (437)
Q Consensus 157 ~~~~vViDE~h 167 (437)
++++||.-..-
T Consensus 359 ~v~~VI~~~~p 369 (579)
T 3sqw_A 359 NVHEVLQIGVP 369 (579)
T ss_dssp TCCEEEEESCC
T ss_pred cCCEEEEcCCC
Confidence 99998865544
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.88 E-value=0.28 Score=46.02 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=32.7
Q ss_pred ccccCccccCCCHHHHHHHHhC---CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 5 KEVKTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
.|-.+|++.+=-+++.+.|+.. .+..|-.++..- +...+.+|+.||+|+|||+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHH
Confidence 4456888887666666666442 222232222211 12236799999999999975
No 218
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.57 E-value=0.64 Score=51.18 Aligned_cols=122 Identities=15% Similarity=0.154 Sum_probs=68.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHH
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (437)
+.+.+.+|.|||||+.++..+.+... .+..++++.+--+|-... +++++-++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~---------~g~~~~~i~~e~~~~~~~---~~~~Gv~~---------------- 1483 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHALDPIY---ARKLGVDI---------------- 1483 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH---------TTCCEEEECTTSCCCHHH---HHHTTCCG----------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh---------cCCeEEEEecCCCCCHHH---HHHcCCCH----------------
Confidence 67999999999999875554433332 566788888866665543 55554221
Q ss_pred HHHhCCCCcEEEECchHHHHHHhcC-CCCCCCCccEEEEcccccccccc-----------------cHHHHHHHHHhCCc
Q 013727 126 TLALGKRPHIVVATPGRLMDHLTNT-KGFSLGTLKYLVLDEADRLLNDD-----------------FEKSLDEILNVIPR 187 (437)
Q Consensus 126 ~~~~~~~~~iiv~Tp~~l~~~l~~~-~~~~~~~~~~vViDE~h~~~~~~-----------------~~~~~~~i~~~~~~ 187 (437)
.++++.-|+.--+++.-- ..+.-..+++||+|.+-.+.... ....+.++...+++
T Consensus 1484 -------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~ 1556 (1706)
T 3cmw_A 1484 -------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1556 (1706)
T ss_dssp -------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 125566664321111100 00122348899999988665421 12235555555555
Q ss_pred cceEEEEeecCchHH
Q 013727 188 MRQTYLFSATMTKKV 202 (437)
Q Consensus 188 ~~~~i~~SAT~~~~~ 202 (437)
..-+++|.......+
T Consensus 1557 ~~~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1557 SNTLLIFINQIRMKI 1571 (1706)
T ss_dssp HTCEEEEEECBC---
T ss_pred CCcEEEEeecccccc
Confidence 555777777765543
No 219
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.54 E-value=2.9 Score=34.37 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=51.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHhc-----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-----CCCC-CCCCCC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VASR-GLDIPS 321 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~-Gid~~~ 321 (437)
+.++||.++++..+..+++.++.. +..+..++|+.+..+.... + .+..+|+|+|. .+.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999888887754 5677888888776554322 2 34679999997 1222 346677
Q ss_pred CCEEEEe
Q 013727 322 VDMVINY 328 (437)
Q Consensus 322 ~~~Vi~~ 328 (437)
++++|.-
T Consensus 147 ~~~lViD 153 (206)
T 1vec_A 147 VQMIVLD 153 (206)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 8887753
No 220
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=87.50 E-value=3.4 Score=33.92 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=52.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc--CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-----CC-CCCCCCCCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VA-SRGLDIPSVD 323 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~-~~Gid~~~~~ 323 (437)
.+.++||.++++..+..+++.++.. ...+..++|+.+..+....+. ...+|+|+|. .+ ...+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3567999999999999999998876 356778888877655444332 2578999996 11 2246677788
Q ss_pred EEEEec
Q 013727 324 MVINYD 329 (437)
Q Consensus 324 ~Vi~~~ 329 (437)
+||.-.
T Consensus 147 ~iViDE 152 (207)
T 2gxq_A 147 VAVLDE 152 (207)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 877543
No 221
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.48 E-value=0.9 Score=41.63 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
...++++.||+|+|||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 346899999999999985
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.97 E-value=0.82 Score=39.50 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=31.9
Q ss_pred cccccCccccCCCHHHHHHHHhC-C-CCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 4 EKEVKTFKELGLRDELVEACENV-G-WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~-g-~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
..+..+|+++.-.+.+.+.+... . +..+..++... ....+.+++.||+|+|||..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHH
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHH
Confidence 44566899998777777666542 0 11111111100 01135699999999999975
No 223
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.90 E-value=0.29 Score=45.59 Aligned_cols=55 Identities=16% Similarity=0.261 Sum_probs=34.1
Q ss_pred cccccCccccCCCHHHHHHHHhC---CCCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 4 EKEVKTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
..|-.+|++.+=-+++.+.|+.. .+..|--++..-+ .-.+.+|+.||+|+|||+.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHH
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHH
Confidence 34556899998556665555432 3333433332221 1236799999999999974
No 224
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.89 E-value=13 Score=34.60 Aligned_cols=18 Identities=33% Similarity=0.263 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~ 63 (437)
+.+++.++.|+|||++..
T Consensus 99 ~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347778999999998644
No 225
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=86.81 E-value=1.2 Score=36.26 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=44.6
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
.+.++||.|+++.-+..++..++.. ++.+..++|+.+.......+ ....+|+|+|. .+.. ++++.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~--Gldi~ 113 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDIS 113 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------------CCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhc--CCCcc
Confidence 4567999999999999999988875 46778888876543322211 23578999993 2222 35778
Q ss_pred CccEEEEc
Q 013727 157 TLKYLVLD 164 (437)
Q Consensus 157 ~~~~vViD 164 (437)
.+++||.-
T Consensus 114 ~~~~VI~~ 121 (185)
T 2jgn_A 114 NVKHVINF 121 (185)
T ss_dssp SBSEEEES
T ss_pred cCCEEEEe
Confidence 88888863
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=86.78 E-value=5.6 Score=35.15 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~ 63 (437)
.+++.+++|+|||....
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46778999999998644
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=86.72 E-value=0.45 Score=38.98 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
+.++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999973
No 228
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.55 E-value=0.43 Score=41.33 Aligned_cols=51 Identities=24% Similarity=0.197 Sum_probs=28.7
Q ss_pred cCccccCCCHHHHHHHHhCC--CCCChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 8 KTFKELGLRDELVEACENVG--WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 8 ~~f~~~~l~~~~~~~l~~~g--~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
.+|+++.-.+.+.+.++.+- +..+..+... .+...+.+++.||+|+|||..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHH
Confidence 46777776666666665420 1111111110 112346799999999999975
No 229
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.49 E-value=0.43 Score=38.77 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|+-+++.||+|||||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999974
No 230
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.42 E-value=1.6 Score=36.78 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=49.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc---CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC------CCCCCCCCCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL---GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD------VASRGLDIPSV 322 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~------~~~~Gid~~~~ 322 (437)
.+.++||.+++++.+..+++.++.. +..+..++|+.+..++...+ . ...+|+|+|. .....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999999988875 66778888887655443333 2 2479999996 12335677788
Q ss_pred CEEEEe
Q 013727 323 DMVINY 328 (437)
Q Consensus 323 ~~Vi~~ 328 (437)
++||.-
T Consensus 169 ~~lViD 174 (228)
T 3iuy_A 169 TYLVID 174 (228)
T ss_dssp CEEEEC
T ss_pred eEEEEE
Confidence 887753
No 231
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.97 E-value=0.34 Score=41.94 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=33.3
Q ss_pred cccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhh--cCCcEEEEcCCCchHHHH
Q 013727 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 4 ~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~--~~~~~lv~~~tGsGKT~~ 61 (437)
..+..+|+++.-.+.....++..-.. . -...++..+- -.+.+++.||+|+|||..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~--~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-H--HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-H--HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 44566899998777776666553110 0 0112333221 124599999999999974
No 232
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.88 E-value=0.19 Score=43.87 Aligned_cols=56 Identities=21% Similarity=0.156 Sum_probs=31.3
Q ss_pred ccccccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhh--hcCCcEEEEcCCCchHHHH
Q 013727 3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHA--LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 3 ~~~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~--~~~~~~lv~~~tGsGKT~~ 61 (437)
+..+..+|+++.-.+...+.+...-- .+. ..+.+..+ ...+.+++.||+|+|||..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~-~~~--~~~~~~~~~~~~~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVD-FLK--YPERYANLGAKIPKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHH-HHH--CHHHHHHHSCCCCSCCCCBCSSCSSHHHH
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHH-HHH--ChHHHHHCCCCCCceEEEECCCCCcHHHH
Confidence 44556688888766655555543200 000 01111111 1235699999999999975
No 233
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.70 E-value=1 Score=43.20 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=23.9
Q ss_pred ChHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 31 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
-...-..++..+..+.++++.||+|+|||..
T Consensus 27 q~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 27 RSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3444455666667789999999999999974
No 234
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=85.67 E-value=1.5 Score=37.26 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=45.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-----CCC-CCCCCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VAS-RGLDIPS 321 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~-~Gid~~~ 321 (437)
.+.++||.+++++.+..+++.++.. +..+..++|+.+..+ ....+..+..+|+|+|+ .+. ..+++.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999998888765 456666777655433 33445567789999994 232 3366777
Q ss_pred CCEEEEe
Q 013727 322 VDMVINY 328 (437)
Q Consensus 322 ~~~Vi~~ 328 (437)
+++||.-
T Consensus 174 ~~~lViD 180 (237)
T 3bor_A 174 IKMFVLD 180 (237)
T ss_dssp CCEEEEE
T ss_pred CcEEEEC
Confidence 8887753
No 235
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.62 E-value=0.69 Score=40.21 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+.++++.||+|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 457899999999999974
No 236
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.49 E-value=0.71 Score=41.63 Aligned_cols=58 Identities=17% Similarity=0.009 Sum_probs=31.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH-HHHHHHHHHHh
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL-AIQISEQFEAL 105 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L-~~q~~~~~~~~ 105 (437)
|.-+++.|++|+|||...+..+........ ....+..++|+.-...+ ..++...++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~---~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPE---KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGG---GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccc---cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999754333322111100 00114567777654332 34555555554
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.27 E-value=0.65 Score=41.91 Aligned_cols=26 Identities=15% Similarity=0.081 Sum_probs=20.1
Q ss_pred HHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 36 AEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 36 ~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
..+...+..+.++++.||+|+|||..
T Consensus 37 ~~l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 37 NRLLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHHHcCCeEEEECCCCCcHHHH
Confidence 33444455678999999999999974
No 238
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.24 E-value=0.65 Score=43.16 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=27.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L 94 (437)
.+.++++.|+||||||...-. ++..+.. .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~--------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM--------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT--------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH--------CCCEEEEEeCCcCH
Confidence 457899999999999975333 3322222 45567777776553
No 239
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.05 E-value=0.43 Score=39.33 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
++-+++.||||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 46689999999999975
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=85.01 E-value=0.57 Score=38.78 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|+.+.+.||+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999974
No 241
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.96 E-value=2.4 Score=40.00 Aligned_cols=53 Identities=9% Similarity=-0.175 Sum_probs=31.6
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
+..|.-+++.|++|+|||...+-.+..... .+..++|+..- .-..|+..++..
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~---------~g~~vl~fSlE-ms~~ql~~R~~~ 246 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSD---------NDDVVNLHSLE-MGKKENIKRLIV 246 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHH---------TTCEEEEECSS-SCTTHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHH---------cCCEEEEEECC-CCHHHHHHHHHH
Confidence 334567999999999999754433333332 34467777543 334455555443
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=84.96 E-value=0.29 Score=42.99 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=27.7
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHH-HHHHHHhhh--cCCcEEEEcCCCchHHHH
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKI-QAEAIPHAL--EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~-Q~~~~~~~~--~~~~~lv~~~tGsGKT~~ 61 (437)
+-.+|++++-.+++.+.|+..=. .|+ ...++..+- -.+.+++.||+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 45688998877888777765211 111 122333221 124599999999999974
No 243
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=84.87 E-value=0.68 Score=49.76 Aligned_cols=40 Identities=23% Similarity=0.155 Sum_probs=28.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 013727 48 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 93 (437)
Q Consensus 48 ~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~ 93 (437)
-+|.|..|||||.+.+.-+...+.... .+.+++++||...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~------~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAP------FGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCT------TSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC------CCCcEEEEecCcc
Confidence 378999999999986655555444321 4467899999763
No 244
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=84.86 E-value=0.57 Score=37.94 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~ 61 (437)
..++.+++.|++|||||..
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 4567899999999999985
No 245
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.83 E-value=0.46 Score=42.83 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=14.0
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
+.++|.||||||||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999975
No 246
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=84.79 E-value=2.2 Score=35.94 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=52.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc-----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-C-----CCCCCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-A-----SRGLDIP 320 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~Gid~~ 320 (437)
.+.++||.+++++.+..+++.++.. +..+..++|+.+..++...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3568999999999999998888765 56788899998876654433 25799999972 1 2345666
Q ss_pred CCCEEEE
Q 013727 321 SVDMVIN 327 (437)
Q Consensus 321 ~~~~Vi~ 327 (437)
+++++|.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7777775
No 247
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=84.76 E-value=0.58 Score=39.05 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|+-+++.||+|||||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456789999999999984
No 248
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.60 E-value=2 Score=39.48 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
..++++.||+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 46899999999999975
No 249
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=84.58 E-value=12 Score=37.37 Aligned_cols=78 Identities=10% Similarity=0.226 Sum_probs=58.5
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
.+.++||.|+|+.-++.+++.+... ++.+..++|+.........+ ....+|+|||. .+. .++++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~--~GlDip 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR--EGLDIP 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS--TTCCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh--CCcccC
Confidence 4568999999999999999998876 46777888877654443332 23578999993 232 357889
Q ss_pred CccEEEEcccccc
Q 013727 157 TLKYLVLDEADRL 169 (437)
Q Consensus 157 ~~~~vViDE~h~~ 169 (437)
.+++||+-+++..
T Consensus 513 ~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 513 EVSLVAILDADKE 525 (661)
T ss_dssp TEEEEEETTTTCC
T ss_pred CCCEEEEeCcccc
Confidence 9999999998754
No 250
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=84.57 E-value=17 Score=34.69 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~ 64 (437)
.+++.|++|+|||+.+.-
T Consensus 103 vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578899999999986443
No 251
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.52 E-value=1.2 Score=40.85 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
+.+++.||+|+|||..
T Consensus 71 ~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAI 86 (368)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5799999999999975
No 252
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.48 E-value=0.61 Score=38.54 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~ 62 (437)
.++.+++.|++|||||+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999853
No 253
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.47 E-value=0.49 Score=42.11 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=13.6
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
+-+++.||||||||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 4578899999999975
No 254
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=84.42 E-value=5.5 Score=36.74 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
...+++|.|+++.-+..+++.+... +..+..++|+.........+ ....+|+|+|. .+. .++++.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 333 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVE 333 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCT
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCcc
Confidence 4567999999999999999999876 46778888988765544332 34678999993 233 346888
Q ss_pred CccEEEEcc
Q 013727 157 TLKYLVLDE 165 (437)
Q Consensus 157 ~~~~vViDE 165 (437)
.+++||.-.
T Consensus 334 ~~~~Vi~~~ 342 (412)
T 3fht_A 334 QVSVVINFD 342 (412)
T ss_dssp TEEEEEESS
T ss_pred CCCEEEEEC
Confidence 999988533
No 255
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=84.39 E-value=3.5 Score=38.25 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=54.1
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
.+.++||.|+++.-++.+++.+... ++.+..++|+.+.......+ ....+|+|+| +.+.. ++++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~--Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR--GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHT--TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhc--CCCcc
Confidence 4667999999999999999988875 47788899988765443332 2357899999 34444 46888
Q ss_pred CccEEEE
Q 013727 157 TLKYLVL 163 (437)
Q Consensus 157 ~~~~vVi 163 (437)
.+++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8998885
No 256
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.37 E-value=1 Score=41.53 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~ 61 (437)
..+..+++.||||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4567799999999999975
No 257
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=84.27 E-value=14 Score=34.49 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~ 64 (437)
.+++.+++|+|||++..-
T Consensus 102 vI~ivG~~GvGKTT~a~~ 119 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGK 119 (433)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 577789999999987543
No 258
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.22 E-value=0.62 Score=42.74 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.2
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 013727 42 ALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~ 61 (437)
+..|..+++.||||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 34678999999999999974
No 259
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=84.18 E-value=0.5 Score=41.50 Aligned_cols=53 Identities=19% Similarity=0.121 Sum_probs=32.2
Q ss_pred cccCccccCCCHHHHHHHHhCCCCCChHHHHHHHHhhh--cCCcEEEEcCCCchHHHH
Q 013727 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 6 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~~~~~~--~~~~~lv~~~tGsGKT~~ 61 (437)
+..+|+++.-.+++.+.++..-.. .. ...++..+- -.+.+++.||+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~--~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LK--NPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HH--CHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HH--CHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 556788888877777766653210 00 112233221 124599999999999974
No 260
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.09 E-value=0.51 Score=38.09 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
++-+++.|++|||||.+
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45689999999999985
No 261
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=84.04 E-value=24 Score=35.13 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=57.9
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
.+.++||.|+|+.-++.+++.+... ++.+..++|+.+.......+ ....+|+|||. .+. .++++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~--~GlDip 506 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR--EGLDIP 506 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC--TTCCCT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhh--cCccCC
Confidence 4668999999999999999988876 46777788877654443332 24578999992 222 357888
Q ss_pred CccEEEEcccccc
Q 013727 157 TLKYLVLDEADRL 169 (437)
Q Consensus 157 ~~~~vViDE~h~~ 169 (437)
.+++||+=+++..
T Consensus 507 ~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 507 EVSLVAILDADKE 519 (664)
T ss_dssp TEEEEEETTTTSC
T ss_pred CCCEEEEeCCccc
Confidence 9999999888754
No 262
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.96 E-value=1 Score=39.94 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~ 63 (437)
++.+++.|++|+|||++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578899999999998644
No 263
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=83.96 E-value=2 Score=49.70 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCCCChHHHHHH----HHhhhcCCcEEEEcCCCchHHHHHH
Q 013727 17 DELVEACENVGWKTPSKIQAEA----IPHALEGKDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 17 ~~~~~~l~~~g~~~~~~~Q~~~----~~~~~~~~~~lv~~~tGsGKT~~~~ 63 (437)
..+.+.++..|+ .+.+.+..- ...+...+.+++.||||||||.++-
T Consensus 892 ~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 892 QCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 445667777888 466665332 2333446789999999999998754
No 264
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=83.83 E-value=4.2 Score=37.27 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=55.1
Q ss_pred CCcEEEEecchHHHHHHHHHHHhc-----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-CC-----CCCCCCCC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VA-----SRGLDIPS 321 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~-----~~Gid~~~ 321 (437)
+.++||.|+++..+...++.++.. +..+..++|+.+..+.... +..+..+|+|+|. .+ ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999988888765 6788999999887665443 4456789999996 22 23466778
Q ss_pred CCEEEEe
Q 013727 322 VDMVINY 328 (437)
Q Consensus 322 ~~~Vi~~ 328 (437)
+++||.-
T Consensus 153 ~~~vViD 159 (391)
T 1xti_A 153 IKHFILD 159 (391)
T ss_dssp CSEEEEC
T ss_pred cCEEEEe
Confidence 8888753
No 265
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.73 E-value=2.6 Score=37.25 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
..++++.||+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 56899999999999975
No 266
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.60 E-value=0.51 Score=41.86 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=31.1
Q ss_pred ccccCccccCCCHHHHHHHHhCCCCCChHHH-HHHHHhh-hcCCcEEEEcCCCchHHHH
Q 013727 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQ-AEAIPHA-LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q-~~~~~~~-~~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+|+++.=.+...+.|...=. .+.. .+.+..+ ...+.+++.||+|+|||..
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHH
T ss_pred CCCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHH
Confidence 344578888777777666654310 0000 0000011 1357899999999999975
No 267
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=83.55 E-value=1.2 Score=37.51 Aligned_cols=21 Identities=29% Similarity=0.153 Sum_probs=16.5
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q 013727 47 DLIGLAQTGSGKTGAFALPIL 67 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~~ 67 (437)
++++.++.|+|||...+-.+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999987554333
No 268
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=83.39 E-value=0.7 Score=37.52 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~ 62 (437)
.+.+++.|++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457899999999999853
No 269
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.35 E-value=1.1 Score=40.92 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=28.6
Q ss_pred HHHhhhc------CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 013727 38 AIPHALE------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT 91 (437)
Q Consensus 38 ~~~~~~~------~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~ 91 (437)
.++.++. ++-+++.|++|+|||...+..+.... . .+..++|+...
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~-~--------~g~~vlyid~E 100 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-R--------EGKTCAFIDAE 100 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCeEEEEeCC
Confidence 4555554 46789999999999986544333322 2 34457777653
No 270
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=83.00 E-value=0.74 Score=38.06 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||+|||||+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567789999999999974
No 271
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.92 E-value=0.68 Score=41.13 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
-+++.||||||||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478899999999975
No 272
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=82.74 E-value=11 Score=32.06 Aligned_cols=72 Identities=8% Similarity=0.155 Sum_probs=50.8
Q ss_pred CCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-C-----CCCCCCCCC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-A-----SRGLDIPSV 322 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~Gid~~~~ 322 (437)
+.++||.+++++.+..+++.++.. +..+..++|+.+..+....+ ....+|+|+|.- + ...+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 468999999999999888877754 46677788887665543332 246799999972 1 223567778
Q ss_pred CEEEEe
Q 013727 323 DMVINY 328 (437)
Q Consensus 323 ~~Vi~~ 328 (437)
+++|.-
T Consensus 176 ~~lViD 181 (253)
T 1wrb_A 176 KYIVLD 181 (253)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 887753
No 273
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=82.73 E-value=0.83 Score=40.74 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
...++++.|++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 457899999999999974
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=82.70 E-value=0.56 Score=37.50 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
-+++.|++|||||+.
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999985
No 275
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=82.59 E-value=0.83 Score=37.90 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.6
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 013727 42 ALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~ 61 (437)
+..++-+++.||+|||||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 34567899999999999974
No 276
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=82.54 E-value=0.84 Score=37.69 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.++-+++.||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 567899999999999974
No 277
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=82.39 E-value=0.74 Score=39.80 Aligned_cols=15 Identities=33% Similarity=0.160 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
-+++.||||||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 368999999999975
No 278
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=82.38 E-value=1.1 Score=37.50 Aligned_cols=20 Identities=25% Similarity=0.028 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~ 63 (437)
.|.-+++.||+|+|||....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45678999999999997543
No 279
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=82.36 E-value=0.79 Score=37.92 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~ 61 (437)
..|.-+.+.||+|||||+.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999974
No 280
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=82.29 E-value=1.9 Score=40.68 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=46.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEE
Q 013727 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (437)
Q Consensus 82 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~v 161 (437)
+.+++|+||++.-++.+++.++.. ++.+..++|...............+|+|+|. .+.. .+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~--GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEM--GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STTC--CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhe--eeccC-ceEE
Confidence 457999999999999999999876 4678888885443332222334689999993 2333 46788 8887
Q ss_pred E
Q 013727 162 V 162 (437)
Q Consensus 162 V 162 (437)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 7
No 281
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=82.20 E-value=9.7 Score=34.91 Aligned_cols=74 Identities=9% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
...++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+. .++++.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip 325 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQ 325 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCT
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCcc
Confidence 4557999999999999999999876 36777888887765443322 34678999993 222 346888
Q ss_pred CccEEEEcc
Q 013727 157 TLKYLVLDE 165 (437)
Q Consensus 157 ~~~~vViDE 165 (437)
.+++||.-.
T Consensus 326 ~~~~Vi~~~ 334 (400)
T 1s2m_A 326 AVNVVINFD 334 (400)
T ss_dssp TEEEEEESS
T ss_pred CCCEEEEeC
Confidence 898888533
No 282
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=82.16 E-value=0.63 Score=38.01 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=16.4
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 013727 42 ALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~ 61 (437)
+..|..+++.||+|||||+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34567789999999999974
No 283
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=82.05 E-value=0.61 Score=42.16 Aligned_cols=19 Identities=47% Similarity=0.508 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~ 61 (437)
..|..+++.||||||||+.
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4678999999999999973
No 284
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=81.94 E-value=0.95 Score=41.24 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=18.6
Q ss_pred HHHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 38 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
.+..++.|.+ ++..|+||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3445556755 677999999999874
No 285
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.67 E-value=0.69 Score=37.70 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.|++|||||+.
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999985
No 286
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.46 E-value=1.8 Score=37.84 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=19.2
Q ss_pred hhhcCCcEEEEcCCCchHHHHHHH
Q 013727 41 HALEGKDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 41 ~~~~~~~~lv~~~tGsGKT~~~~~ 64 (437)
-+..|.-+++.||+|+|||+....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHH
Confidence 455678899999999999975443
No 287
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=81.31 E-value=1.4 Score=42.36 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~ 62 (437)
+.+++|.|+||||||...
T Consensus 167 ~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp SCSEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999753
No 288
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=81.27 E-value=1 Score=35.95 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.|++|||||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46789999999999974
No 289
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=81.24 E-value=5.3 Score=34.47 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=52.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-----CC--CCCCCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VA--SRGLDIP 320 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~--~~Gid~~ 320 (437)
.+.++||.++++..+...++.++.. +..+..+.|+.+.......+ ..+ .+|+|+|+ .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4567999999999999988888764 45677788887766544333 333 79999994 11 2346778
Q ss_pred CCCEEEEe
Q 013727 321 SVDMVINY 328 (437)
Q Consensus 321 ~~~~Vi~~ 328 (437)
++++||.-
T Consensus 201 ~l~~lViD 208 (262)
T 3ly5_A 201 NLQCLVID 208 (262)
T ss_dssp TCCEEEEC
T ss_pred cCCEEEEc
Confidence 88888753
No 290
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=81.22 E-value=1.9 Score=34.52 Aligned_cols=15 Identities=27% Similarity=0.062 Sum_probs=12.8
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
-+.+.|+.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999974
No 291
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=81.01 E-value=0.58 Score=37.65 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||+|||||+.
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456788999999999975
No 292
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=80.97 E-value=1 Score=36.64 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
+-+.+.||+|||||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999974
No 293
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=80.89 E-value=7.7 Score=27.64 Aligned_cols=131 Identities=14% Similarity=0.216 Sum_probs=76.7
Q ss_pred EEEEecchHHHHHHHHHHHhcCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC--CCCCC-----CCCCCCEEEEe
Q 013727 256 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV--ASRGL-----DIPSVDMVINY 328 (437)
Q Consensus 256 ~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~--~~~Gi-----d~~~~~~Vi~~ 328 (437)
.+||.+..+...++...++..|..+..+.++.....|..-+..|.....++--.-+. +.+.+ -.|.+++|+..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvviv 84 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIV 84 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 467888888889999999999999999999999999999999998765544322221 00000 13556655544
Q ss_pred cCC--CChhhHHHHhhhcccCCCCceEEEEEccccHHHHHHHHHHhCCCCCC--CCCCHHHHHHHHH
Q 013727 329 DIP--TNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPE--FPAEEEEVLLLLE 391 (437)
Q Consensus 329 ~~p--~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ 391 (437)
... .-..+|+...- ..| -.++++++..+.+.-+.....+...--. ...+.+++++...
T Consensus 85 ttddkewikdfieeak---erg--vevfvvynnkdddrrkeaqqefrsdgvdvrtvsdkeelieqvr 146 (162)
T 2l82_A 85 TTDDKEWIKDFIEEAK---ERG--VEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSDKEELIEQVR 146 (162)
T ss_dssp ECCCHHHHHHHHHHHH---HTT--CEEEEEEECSCHHHHHHHHHHHCCSSCEEEEESSHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHH---hcC--cEEEEEecCCCchhHHHHHHHhhhcCceeeecCCHHHHHHHHH
Confidence 321 12334443321 111 2455666666666666666555443221 1234455544443
No 294
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=80.85 E-value=1.2 Score=40.07 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=18.1
Q ss_pred HHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 39 IPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 39 ~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
+..++.|.+ ++..|+||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344556765 677999999999874
No 295
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=80.77 E-value=3.6 Score=34.75 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=49.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcC----CceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-CC----C--CCCCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLG----QRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VA----S--RGLDIP 320 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~----~--~Gid~~ 320 (437)
.+.++||.++++..+...++.++..+ ..+..++|+.+..+....+ +..+|+|+|. .+ . ..+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 45679999999999999988887653 6788888887655443333 3679999996 21 1 236677
Q ss_pred CCCEEEE
Q 013727 321 SVDMVIN 327 (437)
Q Consensus 321 ~~~~Vi~ 327 (437)
+++++|.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777775
No 296
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=80.69 E-value=7.5 Score=35.85 Aligned_cols=74 Identities=8% Similarity=0.207 Sum_probs=53.7
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
...++||.|+++.-+..+++.+... ++.+..++|+.........+ ....+|+|+|. .+. .++++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidi~ 343 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA--RGLDVP 343 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS--SSCCCT
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--CcCCcc
Confidence 3457999999999999999888875 46778888988765443332 23578999993 233 346888
Q ss_pred CccEEEEcc
Q 013727 157 TLKYLVLDE 165 (437)
Q Consensus 157 ~~~~vViDE 165 (437)
.+++||.-.
T Consensus 344 ~v~~Vi~~~ 352 (410)
T 2j0s_A 344 QVSLIINYD 352 (410)
T ss_dssp TEEEEEESS
T ss_pred cCCEEEEEC
Confidence 999888533
No 297
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=80.57 E-value=1.1 Score=36.53 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+++.|++|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356799999999999985
No 298
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=80.49 E-value=1.1 Score=37.56 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~ 61 (437)
..|+-+.+.||+|+|||+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4578899999999999974
No 299
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.43 E-value=2.1 Score=40.57 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~ 62 (437)
++.+++.||+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 367999999999999753
No 300
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=80.37 E-value=1.6 Score=38.59 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=17.7
Q ss_pred hhhcCCcEEEEcCCCchHHHHH
Q 013727 41 HALEGKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 41 ~~~~~~~~lv~~~tGsGKT~~~ 62 (437)
.+..|.-+++.||+|+|||...
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHH
Confidence 3445778999999999999753
No 301
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=80.29 E-value=0.79 Score=36.91 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
-+++.|++|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478999999999985
No 302
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=80.22 E-value=1.4 Score=40.03 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=19.2
Q ss_pred HHHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 38 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
.+..++.|.+ ++..|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4555667765 677999999999874
No 303
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=80.14 E-value=1.3 Score=39.70 Aligned_cols=61 Identities=15% Similarity=-0.033 Sum_probs=31.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhh---cCCCCC----eEEEEEcCcHHH-HHHHHHHHHHhh
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAEN---QRTVPA----FFACVLSPTREL-AIQISEQFEALG 106 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~---~~~~~~----~~~lvl~P~~~L-~~q~~~~~~~~~ 106 (437)
.-+++.|++|+|||...+-.+.......... .....+ ..++|+.-...+ .+++...++.++
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g 167 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAG 167 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence 5689999999999975443333211110000 000012 578887655432 455555555553
No 304
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=80.08 E-value=2.5 Score=35.40 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=46.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC------CCCCCCCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV------ASRGLDIPS 321 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~Gid~~~ 321 (437)
.+.++||.++++..+..+++.++.. +..+..++|+.+..+.... +. ..+|+|+|.- ....+++.+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999999888887754 5677888888765543332 22 3789999962 134566777
Q ss_pred CCEEEEec
Q 013727 322 VDMVINYD 329 (437)
Q Consensus 322 ~~~Vi~~~ 329 (437)
+++||.-.
T Consensus 156 ~~~iViDE 163 (224)
T 1qde_A 156 IKMFILDE 163 (224)
T ss_dssp CCEEEEET
T ss_pred CcEEEEcC
Confidence 88877533
No 305
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=79.91 E-value=0.99 Score=40.44 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+++.||||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999975
No 306
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=79.91 E-value=1.3 Score=40.14 Aligned_cols=25 Identities=36% Similarity=0.605 Sum_probs=19.6
Q ss_pred HHHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 38 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
.+..++.|.+ ++..|+||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5566667765 577999999999884
No 307
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=79.86 E-value=4 Score=33.44 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=18.5
Q ss_pred CcEEEECchHHHHHHhcCCCCCCCCccEEEEcccc
Q 013727 133 PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (437)
Q Consensus 133 ~~iiv~Tp~~l~~~l~~~~~~~~~~~~~vViDE~h 167 (437)
.+++-+.++.+...+... ...+++||+|=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l----~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD----LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH----TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh----cCCCCEEEEECCC
Confidence 445555556665555432 2348899999654
No 308
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.80 E-value=1.8 Score=38.59 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~ 63 (437)
+-+++.|++|+|||+...
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 357889999999998643
No 309
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=79.67 E-value=1.2 Score=40.38 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=17.2
Q ss_pred HhhhcCCc--EEEEcCCCchHHHHH
Q 013727 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 40 ~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
..++.|.+ ++..|+||||||.+.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 34455654 677999999999873
No 310
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=79.51 E-value=3.9 Score=43.36 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=57.3
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc----CC----ceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-CCCCCC-CCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL----GQ----RAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGL-DIPS 321 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~Gi-d~~~ 321 (437)
.+.++||.++++..+..+++.++.. +. .+..++|+.+..++......+.+ .+|+|+|+ .+..-+ ++.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4678999999999999888888754 45 78899999999888888887777 89999997 221111 1557
Q ss_pred CCEEEEe
Q 013727 322 VDMVINY 328 (437)
Q Consensus 322 ~~~Vi~~ 328 (437)
+++||.-
T Consensus 176 l~~lViD 182 (1054)
T 1gku_B 176 FDFIFVD 182 (1054)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 7787753
No 311
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=79.42 E-value=1.3 Score=36.65 Aligned_cols=16 Identities=31% Similarity=0.214 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHH
Q 013727 47 DLIGLAQTGSGKTGAF 62 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~ 62 (437)
-.++.|++|||||..+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4689999999999864
No 312
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=79.40 E-value=0.82 Score=43.55 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=31.7
Q ss_pred ccccCccccCCCHHHHHHHHhC-C-CCCChHHHHHHHHhhh--cCCcEEEEcCCCchHHHH
Q 013727 5 KEVKTFKELGLRDELVEACENV-G-WKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 5 ~~~~~f~~~~l~~~~~~~l~~~-g-~~~~~~~Q~~~~~~~~--~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+|+++.=.++..+.++.. . +..+. .+..+- -.+.+++.||+|+|||+.
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLL 65 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHH
Confidence 4556899887777666655542 1 11121 122211 125699999999999975
No 313
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=79.38 E-value=1.4 Score=40.02 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=17.3
Q ss_pred HhhhcCCc--EEEEcCCCchHHHHH
Q 013727 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 40 ~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
..++.|.+ ++..|+||||||.+.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34456754 677999999999874
No 314
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=79.30 E-value=1.3 Score=41.08 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=17.9
Q ss_pred HHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 39 IPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 39 ~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
+..++.|.+ ++..|+||||||.+.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 344556754 677999999999874
No 315
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=79.27 E-value=1.4 Score=40.11 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=17.5
Q ss_pred HhhhcCCc--EEEEcCCCchHHHHH
Q 013727 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 40 ~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
..++.|.+ ++..|+||||||.+.
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 34556754 677999999999874
No 316
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=79.25 E-value=36 Score=30.72 Aligned_cols=76 Identities=13% Similarity=0.223 Sum_probs=56.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
...++||.|+++.-++.+++.++.. +..+..++|+.+.......+ ....+|+|+|. .+. .++++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCcc
Confidence 4567999999999999999998875 46778888887765443332 34578999993 233 347889
Q ss_pred CccEEEEcccc
Q 013727 157 TLKYLVLDEAD 167 (437)
Q Consensus 157 ~~~~vViDE~h 167 (437)
.+++||.-...
T Consensus 311 ~~~~Vi~~~~p 321 (395)
T 3pey_A 311 TVSMVVNYDLP 321 (395)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEcCCC
Confidence 99999876555
No 317
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=80.52 E-value=0.39 Score=38.65 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=49.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
.+.++||.|+++.-+..+++.++.. ++.+..++|+.+.......+ ....+|+|+|. .+.. ++++.
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~--Gid~~ 97 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAAR--GIDIP 97 (170)
Confidence 4457899999999999888888765 46677778876554333222 22567999992 2222 35677
Q ss_pred CccEEEEcc
Q 013727 157 TLKYLVLDE 165 (437)
Q Consensus 157 ~~~~vViDE 165 (437)
.+++||.-+
T Consensus 98 ~~~~Vi~~~ 106 (170)
T 2yjt_D 98 DVSHVFNFD 106 (170)
Confidence 777777543
No 318
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=79.14 E-value=1.4 Score=40.23 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=17.8
Q ss_pred HHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 39 IPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 39 ~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
+..++.|.+ ++..|+||||||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 334456754 677999999999874
No 319
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=79.09 E-value=0.87 Score=36.95 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+++.|++|||||+.
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345689999999999985
No 320
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=79.05 E-value=1.4 Score=40.85 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=19.4
Q ss_pred HHHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 38 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
.+..++.|.+ ++..|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4556667765 577999999999884
No 321
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=79.04 E-value=1.4 Score=39.57 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=19.2
Q ss_pred HHHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 38 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
.+..++.|.+ ++..|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4555667765 677999999999874
No 322
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=78.99 E-value=1 Score=39.86 Aligned_cols=16 Identities=25% Similarity=0.017 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999974
No 323
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=78.97 E-value=1.4 Score=40.38 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=17.4
Q ss_pred HhhhcCCc--EEEEcCCCchHHHHH
Q 013727 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 40 ~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
..++.|.+ ++..|+||||||.+.
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34456754 677999999999874
No 324
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=78.93 E-value=1.4 Score=40.01 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=17.8
Q ss_pred HHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 39 IPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 39 ~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
+..++.|.+ ++..|+||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 344456754 677999999999874
No 325
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=78.90 E-value=2.6 Score=45.36 Aligned_cols=59 Identities=20% Similarity=0.172 Sum_probs=41.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHHHHhh---hcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 013727 47 DLIGLAQTGSGKTGAFALPILQALLEIAE---NQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~~~~~~~~l~~~~~---~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 105 (437)
..+|.|..|||||.+...-++..+..... ........++|+|+=|+.-+..+.+++...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 45999999999999866666666653210 001123457999999999999988877654
No 326
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=78.89 E-value=1.5 Score=39.96 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=17.3
Q ss_pred HhhhcCCc--EEEEcCCCchHHHHH
Q 013727 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 40 ~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
..++.|.+ ++..|+||||||.+.
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 34456654 677999999999874
No 327
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=78.69 E-value=1.2 Score=35.49 Aligned_cols=15 Identities=13% Similarity=-0.164 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+++.|++|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999985
No 328
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=78.64 E-value=1.5 Score=39.76 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=17.7
Q ss_pred HHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 39 IPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 39 ~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
+..++.|.+ ++..|+||||||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 334456755 677999999999874
No 329
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=78.57 E-value=1.5 Score=39.97 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=18.8
Q ss_pred HHHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 38 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
.+..++.|.+ ++..|+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4455567765 577999999999874
No 330
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=78.54 E-value=1.1 Score=40.32 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHH
Q 013727 47 DLIGLAQTGSGKTGAF 62 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~ 62 (437)
-++|.||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999753
No 331
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=78.46 E-value=1.5 Score=40.01 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=18.3
Q ss_pred HHHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 38 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
.+..++.|.+ ++..|+||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3444556765 577899999999874
No 332
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=78.45 E-value=1.5 Score=40.07 Aligned_cols=24 Identities=38% Similarity=0.702 Sum_probs=17.9
Q ss_pred HHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 39 IPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 39 ~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
+..++.|.+ ++..|+||||||.+.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 344456755 677999999999874
No 333
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=78.24 E-value=1.4 Score=40.18 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=18.3
Q ss_pred HHHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 38 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
.+..++.|.+ ++..|+||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3444556754 677999999999874
No 334
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=78.21 E-value=2.2 Score=37.97 Aligned_cols=17 Identities=29% Similarity=0.519 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+.+.||+|||||+.
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 45688899999999985
No 335
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.05 E-value=4.2 Score=47.86 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHhh----hcCCcEEEEcCCCchHHHHHH
Q 013727 17 DELVEACENVGWKTPSKIQAEAIPHA----LEGKDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 17 ~~~~~~l~~~g~~~~~~~Q~~~~~~~----~~~~~~lv~~~tGsGKT~~~~ 63 (437)
..+.+.++++|+ ++.+.+..=+-.+ ...+.+++.||||||||.++-
T Consensus 875 ~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 875 KKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 456677778898 5666664433333 345779999999999998754
No 336
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=78.04 E-value=1.4 Score=36.30 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+++.|+.|||||+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356789999999999974
No 337
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=77.90 E-value=3 Score=36.94 Aligned_cols=69 Identities=7% Similarity=0.022 Sum_probs=47.6
Q ss_pred CCcEEEEecchHHHHHHHHHHHhc-----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-----C-C-CCCCCC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-----A-S-RGLDIP 320 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~-~Gid~~ 320 (437)
+..+||.+++++.|..++..++.. +..+....++.+.... .....+|+|+|+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999988888764 3456666665543221 1356789999972 1 2 357788
Q ss_pred CCCEEEEe
Q 013727 321 SVDMVINY 328 (437)
Q Consensus 321 ~~~~Vi~~ 328 (437)
++.++|.-
T Consensus 235 ~l~~lVlD 242 (300)
T 3fmo_B 235 KIKVFVLD 242 (300)
T ss_dssp GCSEEEET
T ss_pred hceEEEEe
Confidence 88888853
No 338
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=77.68 E-value=1.5 Score=36.47 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=16.3
Q ss_pred hhhcCCcEEEEcCCCchHHHH
Q 013727 41 HALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 41 ~~~~~~~~lv~~~tGsGKT~~ 61 (437)
.+..|.-+.+.||+|||||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456788899999999999974
No 339
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=77.55 E-value=2.2 Score=38.27 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~ 63 (437)
+.+++.+++|+|||++..
T Consensus 106 ~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357889999999998644
No 340
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=77.48 E-value=1.6 Score=40.15 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=18.0
Q ss_pred HHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 39 IPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 39 ~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
+..++.|.+ ++..|+||||||.+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 344556754 677999999999884
No 341
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=77.39 E-value=1.4 Score=39.47 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
-+++.|+.|||||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 468899999999974
No 342
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=77.13 E-value=1.3 Score=35.53 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.|+.|||||+.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45689999999999975
No 343
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=77.04 E-value=1.5 Score=40.11 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=17.3
Q ss_pred HhhhcCCc--EEEEcCCCchHHHHH
Q 013727 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 40 ~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
..++.|.+ ++..|+||||||.+.
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCceEEEEeecCCCCCcceec
Confidence 34456754 677999999999873
No 344
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=76.85 E-value=1.7 Score=37.47 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+++.|++|||||+.
T Consensus 47 ~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp TTCCEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 388999999999999985
No 345
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=76.84 E-value=8.7 Score=39.03 Aligned_cols=73 Identities=14% Similarity=0.063 Sum_probs=54.5
Q ss_pred HhcCCCcEEEEecchHHHHHHHHHHHh----cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-CC----------
Q 013727 249 TEVSASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VA---------- 313 (437)
Q Consensus 249 ~~~~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~---------- 313 (437)
....+..++|.++|++.|.+.++.+.. .|+.+..+.|+++..+|.... .++|+++|+ -+
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 445677899999999999888777654 589999999999987765543 379999996 11
Q ss_pred --CCCCCCCCCCEEEE
Q 013727 314 --SRGLDIPSVDMVIN 327 (437)
Q Consensus 314 --~~Gid~~~~~~Vi~ 327 (437)
...++..+++++|.
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 12366677777764
No 346
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.82 E-value=7 Score=35.24 Aligned_cols=74 Identities=15% Similarity=0.345 Sum_probs=53.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCC
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~ 156 (437)
.+.+++|.|+++.-+..+++.++.. +..+..++|+.+.......+ ....+|+|+|. .+.. ++++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR--GIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH--HCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCCcc
Confidence 4567899999999999999998876 46778888887765443322 34678999993 2222 25777
Q ss_pred CccEEEEcc
Q 013727 157 TLKYLVLDE 165 (437)
Q Consensus 157 ~~~~vViDE 165 (437)
.+++||.-.
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 888888644
No 347
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=76.70 E-value=4.2 Score=40.63 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=47.9
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEE
Q 013727 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (437)
Q Consensus 82 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~v 161 (437)
+.+++|+||++.-++.+++.|+.. ++.+..++|...............+|+|+| +.+.. .+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaT-----dv~e~--GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITT-----DISEM--GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEEC-----GGGGT--TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEEC-----chhhc--ceeeC-CcEE
Confidence 557999999999999988888765 577888888533222222223467999999 33333 35777 7776
Q ss_pred E
Q 013727 162 V 162 (437)
Q Consensus 162 V 162 (437)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 348
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=76.64 E-value=1.5 Score=40.14 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=18.8
Q ss_pred HHHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 38 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
.+..++.|.+ ++..|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4455567765 677999999999874
No 349
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=76.59 E-value=9 Score=35.84 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=52.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCCCccE
Q 013727 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 160 (437)
Q Consensus 85 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 160 (437)
+||.|+++.-+..+++.+... ++.+..++|+.........+ ....+|+|+|. .+.. ++++.++++
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~r--GlDi~~v~~ 371 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASR--GLDIKNIKH 371 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTS--SCCCTTCCE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhC--CCCcccCCE
Confidence 899999999999999888875 47788899988765544333 34678999993 3333 478899999
Q ss_pred EEE
Q 013727 161 LVL 163 (437)
Q Consensus 161 vVi 163 (437)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 350
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=76.49 E-value=2.8 Score=33.95 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~ 62 (437)
+..+++.|++|||||+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999853
No 351
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=76.40 E-value=1.7 Score=36.59 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~ 61 (437)
..|.-+.+.||.|||||+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4567889999999999974
No 352
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=76.37 E-value=1.5 Score=36.81 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~ 62 (437)
.+-+++.||+||||++..
T Consensus 29 ~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp CEEEEEECCTTCCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356788999999999853
No 353
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=76.32 E-value=1.9 Score=40.13 Aligned_cols=25 Identities=44% Similarity=0.634 Sum_probs=19.3
Q ss_pred HHHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 38 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
.+..++.|.+ ++..|+||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4556667765 577999999999874
No 354
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=76.31 E-value=1.4 Score=40.80 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 013727 47 DLIGLAQTGSGKTGAF 62 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~ 62 (437)
-++|.||||||||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 4688999999999753
No 355
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=76.24 E-value=1.6 Score=34.65 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
+++++.|+.|||||++.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999853
No 356
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=76.21 E-value=1.7 Score=35.48 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.9
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~ 61 (437)
..+..+++.|++|||||+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TTSCEEEEEECTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3456789999999999985
No 357
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=76.12 E-value=1 Score=36.78 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.|++|||||+.
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34688999999999985
No 358
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=76.02 E-value=1.9 Score=40.50 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=17.9
Q ss_pred HHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 39 IPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 39 ~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
+..++.|.+ ++..|.||||||.+.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 334456755 677999999999874
No 359
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=75.90 E-value=1.8 Score=34.69 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
+.+++.|++|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999853
No 360
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=75.75 E-value=1.7 Score=35.76 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+++.|+.|||||+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456789999999999985
No 361
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=75.73 E-value=1.5 Score=36.18 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=15.8
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~ 61 (437)
..+..+.+.|++|||||+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp SCCEEEEEECSTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3456788999999999975
No 362
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=75.64 E-value=1.9 Score=39.56 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=18.5
Q ss_pred HHHhhhcCCc--EEEEcCCCchHHHHH
Q 013727 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 38 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
.+..++.|.+ ++..|+||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 3445556765 677999999999874
No 363
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=75.62 E-value=1.6 Score=40.15 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=22.7
Q ss_pred ChHHHHHHHHh--------hhcCCc--EEEEcCCCchHHHHH
Q 013727 31 PSKIQAEAIPH--------ALEGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 31 ~~~~Q~~~~~~--------~~~~~~--~lv~~~tGsGKT~~~ 62 (437)
+..-|.+++.. ++.|.+ ++..|+||||||.+.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 44557766653 445654 677999999999874
No 364
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=75.52 E-value=2.7 Score=37.28 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+.-+.+.||+|+|||+.
T Consensus 100 g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 34578999999999985
No 365
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=75.36 E-value=2.5 Score=41.01 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALL 71 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~ 71 (437)
..+++|.|.||||||.+ +-.++..+.
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 46899999999999975 344444444
No 366
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=75.22 E-value=0.97 Score=38.30 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=12.6
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 013727 42 ALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~ 61 (437)
+..|.-+.+.||+|||||+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34567789999999999975
No 367
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=75.21 E-value=2.2 Score=36.48 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
...+++.|++|||||+.
T Consensus 29 ~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35689999999999985
No 368
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=75.18 E-value=1.5 Score=35.65 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
..+++.|++|||||+..
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999853
No 369
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=75.15 E-value=9.2 Score=38.85 Aligned_cols=72 Identities=14% Similarity=-0.031 Sum_probs=52.7
Q ss_pred hcCCCcEEEEecchHHHHHHHHHHHh----cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-C-----CCC---
Q 013727 250 EVSASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-A-----SRG--- 316 (437)
Q Consensus 250 ~~~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~G--- 316 (437)
...+..++|.++|++.|.+.++.+.. .|+.+..+.|+++...|.... .++|+|+|+- + ..+
T Consensus 112 ~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~ 185 (853)
T 2fsf_A 112 ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAF 185 (853)
T ss_dssp HTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhc
Confidence 34567899999999999887776654 589999999999987655443 3799999972 1 222
Q ss_pred ----CCCCCCCEEEE
Q 013727 317 ----LDIPSVDMVIN 327 (437)
Q Consensus 317 ----id~~~~~~Vi~ 327 (437)
++..++.++|.
T Consensus 186 ~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 186 SPEERVQRKLHYALV 200 (853)
T ss_dssp SGGGCCCCSCCEEEE
T ss_pred cHhHhcccCCcEEEE
Confidence 45567777764
No 370
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=75.14 E-value=3.8 Score=35.38 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=33.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhhcC
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 108 (437)
|..+++.+.+|+||| ++.+-.+..... .+-+++|+.-. +-..++.+.++.++.+
T Consensus 21 gs~~li~g~p~~~~~-~l~~qfl~~g~~--------~Ge~~~~~~~~-e~~~~l~~~~~~~G~d 74 (260)
T 3bs4_A 21 SLILIHEEDASSRGK-DILFYILSRKLK--------SDNLVGMFSIS-YPLQLIIRILSRFGVD 74 (260)
T ss_dssp CEEEEEECSGGGCHH-HHHHHHHHHHHH--------TTCEEEEEECS-SCHHHHHHHHHHTTCC
T ss_pred CcEEEEEeCCCccHH-HHHHHHHHHHHH--------CCCcEEEEEEe-CCHHHHHHHHHHcCCC
Confidence 356788878888888 443334333332 55567776553 4456777777777543
No 371
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=75.05 E-value=3.5 Score=44.80 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=26.9
Q ss_pred CCccEEEEcccccccccccHHHHHHHHHhCCccceEEEE
Q 013727 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194 (437)
Q Consensus 156 ~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 194 (437)
++-+++|+||+=--+|..-...+...+.....++-++..
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~I 1272 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVI 1272 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEE
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 345679999998777777677777777666555544443
No 372
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.98 E-value=1.6 Score=39.92 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
.+.+++.||+|+|||..
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999975
No 373
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=74.93 E-value=1.8 Score=39.16 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999974
No 374
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=74.92 E-value=1.9 Score=34.94 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+.+.||.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999974
No 375
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=74.86 E-value=2.1 Score=35.52 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 013727 47 DLIGLAQTGSGKTGAF 62 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~ 62 (437)
.+++.||+||||++.+
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999753
No 376
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=74.75 E-value=1.6 Score=38.82 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999753
No 377
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=74.64 E-value=18 Score=36.84 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=54.9
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhh-------cCCCcEEEEEEcCCChHHHHHHhCC---------CCcEEEECchHHH
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALG-------SGISLRCAVLVGGVDMMQQTLALGK---------RPHIVVATPGRLM 144 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~iiv~Tp~~l~ 144 (437)
....+||.+|++.-++.+++.+.... ...++.+..++|+.+...+...+.. ...|+|+|.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~---- 377 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN---- 377 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc----
Confidence 45689999999999999998887522 2346888999999887766554432 357999993
Q ss_pred HHHhcCCCCCCCCccEEEE
Q 013727 145 DHLTNTKGFSLGTLKYLVL 163 (437)
Q Consensus 145 ~~l~~~~~~~~~~~~~vVi 163 (437)
.+.. .+++..+.+||-
T Consensus 378 -iae~--GidIp~v~~VId 393 (773)
T 2xau_A 378 -IAET--SLTIDGIVYVVD 393 (773)
T ss_dssp -HHHH--TCCCTTEEEEEE
T ss_pred -HHHh--CcCcCCeEEEEe
Confidence 3333 357888887763
No 378
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=74.57 E-value=11 Score=35.41 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=51.0
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEc--------CCChHHHHHHh----CCCCcEEEECchHHHHHHh
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG--------GVDMMQQTLAL----GKRPHIVVATPGRLMDHLT 148 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~ 148 (437)
.+.++||.++++.-+..+.+.+... ++.+..++| +.+...+...+ ....+|+|+|. .+.
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~ 430 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGE 430 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGG
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----ccc
Confidence 5667999999999999999988876 477778888 44332222211 23578999992 222
Q ss_pred cCCCCCCCCccEEEEcccc
Q 013727 149 NTKGFSLGTLKYLVLDEAD 167 (437)
Q Consensus 149 ~~~~~~~~~~~~vViDE~h 167 (437)
.++++..+++||+-+..
T Consensus 431 --~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 431 --EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp --GGGGSTTCCEEEESSCC
T ss_pred --cCCCchhCCEEEEeCCC
Confidence 24678888988865544
No 379
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=74.45 E-value=1.8 Score=36.01 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=20.6
Q ss_pred hHHHHHHHHhhhcCCcEEEEcCCCchHHHH
Q 013727 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 32 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
++.++.. .....+..+++.|++|||||..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 4444444 3345567789999999999975
No 380
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=74.38 E-value=1.8 Score=35.66 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
..+++.|++|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4799999999999985
No 381
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=74.37 E-value=1.8 Score=35.11 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.4
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
.-+++.||+|||||+.
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3468899999999985
No 382
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=74.20 E-value=1.1 Score=37.28 Aligned_cols=19 Identities=26% Similarity=-0.055 Sum_probs=15.3
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~ 61 (437)
..+.-+.+.|++|||||+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCCEEEEEEESTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3455688999999999974
No 383
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=74.05 E-value=2.2 Score=34.41 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~ 62 (437)
..+++.|++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999853
No 384
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=73.96 E-value=1.3 Score=39.13 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
.-+++.||+|||||+.
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999975
No 385
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=73.86 E-value=2.1 Score=38.95 Aligned_cols=19 Identities=42% Similarity=0.471 Sum_probs=15.5
Q ss_pred cCCc--EEEEcCCCchHHHHH
Q 013727 44 EGKD--LIGLAQTGSGKTGAF 62 (437)
Q Consensus 44 ~~~~--~lv~~~tGsGKT~~~ 62 (437)
.|.+ ++..|+||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3655 688999999999874
No 386
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=73.78 E-value=1.6 Score=36.29 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+.-+.+.||+|||||+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345688999999999974
No 387
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=73.78 E-value=5.7 Score=37.49 Aligned_cols=69 Identities=13% Similarity=-0.009 Sum_probs=48.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEE
Q 013727 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (437)
Q Consensus 82 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~v 161 (437)
..++||.||++.-++++++.++.. ++.+..+++...............+|+|+| +.+.. .+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT-----~v~~~--GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-----DISEM--GANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEEC-----GGGGS--SCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEEC-----CHHHh--CcCCCC-CEE
Confidence 446999999999999999888765 467777887655332222224468999999 33443 357777 666
Q ss_pred E
Q 013727 162 V 162 (437)
Q Consensus 162 V 162 (437)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 6
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=73.74 E-value=2.2 Score=33.91 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=14.0
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
+.+++.|++|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999985
No 389
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=73.66 E-value=11 Score=38.52 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=54.3
Q ss_pred HhcCCCcEEEEecchHHHHHHHHHHHh----cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-C-----C----
Q 013727 249 TEVSASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-A-----S---- 314 (437)
Q Consensus 249 ~~~~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~---- 314 (437)
....+..++|.++|+..|.+.++.+.. .|+.+..+.|+++..+|.... .++|+++|+- + .
T Consensus 148 ~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~ 221 (922)
T 1nkt_A 148 NALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMA 221 (922)
T ss_dssp HHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhh
Confidence 445677899999999999887777654 589999999999987766554 3799999961 1 1
Q ss_pred ---CCCCCCCCCEEEE
Q 013727 315 ---RGLDIPSVDMVIN 327 (437)
Q Consensus 315 ---~Gid~~~~~~Vi~ 327 (437)
..++..+++++|.
T Consensus 222 ~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 222 HSLDDLVQRGHHYAIV 237 (922)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred ccHhhhccCCCCEEEE
Confidence 2356667777764
No 390
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=73.55 E-value=1.6 Score=34.04 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
-.++.||+|||||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468899999999975
No 391
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=73.48 E-value=4.1 Score=32.72 Aligned_cols=16 Identities=38% Similarity=0.241 Sum_probs=13.4
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
.-+.+.|+.|||||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 3578899999999974
No 392
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=73.43 E-value=1.8 Score=35.82 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+++.|++|||||+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 345689999999999985
No 393
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=73.35 E-value=2.4 Score=34.66 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=25.8
Q ss_pred CCCccEEEEcccccc--cccccHHHHHHHHHhCCccceEEEEeecC
Q 013727 155 LGTLKYLVLDEADRL--LNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (437)
Q Consensus 155 ~~~~~~vViDE~h~~--~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 198 (437)
....+++|+||+..+ .+..+...+..++.. ...+++-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 466789999998766 344566666666553 23355546664
No 394
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=73.31 E-value=3 Score=37.77 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=29.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH-HHHHHHHHHHh
Q 013727 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL-AIQISEQFEAL 105 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L-~~q~~~~~~~~ 105 (437)
.-+++.||+|+|||...+..+...... ......+..++|+.....+ ..++...+..+
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~---~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLP---GAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSC---BTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 467999999999997543322221110 0000124467777654321 34444445544
No 395
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=73.27 E-value=2 Score=35.79 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 013727 47 DLIGLAQTGSGKTGAF 62 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~ 62 (437)
.+++.|++|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 396
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=73.19 E-value=1.5 Score=36.80 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||+|||||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999974
No 397
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=73.12 E-value=2.3 Score=35.61 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.|++|||||+.
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999985
No 398
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=73.12 E-value=2.2 Score=35.76 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
...+++.|++|||||+.
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35689999999999985
No 399
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=73.05 E-value=1.8 Score=35.00 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=22.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 013727 48 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (437)
Q Consensus 48 ~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 104 (437)
++|.|++|||||..+. .+.. .+..++|+......-..+.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~-----~la~--------~~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-----ALIG--------DAPQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHH-----HHHC--------SCSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHH-----HHHh--------cCCCeEEEecCCCCCHHHHHHHHH
Confidence 6899999999996422 2221 122367887755443444444443
No 400
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=73.05 E-value=2.1 Score=34.94 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+++.|++|||||+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 346789999999999985
No 401
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=73.03 E-value=2.1 Score=36.07 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
...+++.|++|||||+.
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35689999999999985
No 402
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=72.75 E-value=2.1 Score=38.00 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|..+.+.||+|||||+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577899999999999974
No 403
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=72.54 E-value=2.1 Score=34.77 Aligned_cols=15 Identities=27% Similarity=0.131 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+++.|++|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 404
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=72.41 E-value=2.1 Score=35.60 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+++.|++|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999985
No 405
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=72.38 E-value=2.3 Score=35.96 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~ 62 (437)
+..+++.|++|||||+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457999999999999853
No 406
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=72.34 E-value=1.7 Score=37.03 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHH
Q 013727 44 EGKDLIGLAQTGSGKTG 60 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~ 60 (437)
.|.-+.+.||.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46788999999999997
No 407
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=72.03 E-value=3.1 Score=30.28 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=31.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHM 287 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 287 (437)
...++++||.+-..+...+..|+..|+++..+.|++
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 456899999998899999999999999989999884
No 408
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=71.93 E-value=8.4 Score=37.18 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=49.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-----CCCC-C-CCCC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-----ASRG-L-DIPS 321 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~G-i-d~~~ 321 (437)
+.++||.++++..+....+.++.. +..+..++|+.+...+...+. ...+|+|+|.- +..+ + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999988887777764 889999999986665433332 14689999962 2222 3 6777
Q ss_pred CCEEEEec
Q 013727 322 VDMVINYD 329 (437)
Q Consensus 322 ~~~Vi~~~ 329 (437)
+++||.-.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 88887643
No 409
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=71.72 E-value=3.7 Score=37.42 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~ 62 (437)
+.-+.+.||+|+|||+..
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 345789999999999853
No 410
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=71.68 E-value=2.3 Score=35.66 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=14.0
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
..+.+.|++|||||+.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999985
No 411
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=71.62 E-value=4.9 Score=36.97 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=21.8
Q ss_pred HHHHHHHHhhh---cCCcEEEEcCCCchHHHHH
Q 013727 33 KIQAEAIPHAL---EGKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 33 ~~Q~~~~~~~~---~~~~~lv~~~tGsGKT~~~ 62 (437)
..-..+++.+. .|+.+.+.+|+|+|||...
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 33344555444 5899999999999999753
No 412
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=71.49 E-value=2 Score=35.57 Aligned_cols=17 Identities=29% Similarity=-0.007 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+.-+.+.||+|||||+.
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 44578999999999974
No 413
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=71.38 E-value=1.8 Score=34.81 Aligned_cols=15 Identities=33% Similarity=0.224 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+.+.|++|||||+.
T Consensus 4 ~v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEEESCHHHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999975
No 414
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=71.28 E-value=7.2 Score=37.62 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=50.5
Q ss_pred CCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-C----CCCC-C-CCCC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-V----ASRG-L-DIPS 321 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~----~~~G-i-d~~~ 321 (437)
+.++||.++++..+....+.++.. +..+..++|+.+...+...+. +..+|+|+|. . +..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888877777654 889999999987655433332 1478999996 2 2222 3 5666
Q ss_pred CCEEEE
Q 013727 322 VDMVIN 327 (437)
Q Consensus 322 ~~~Vi~ 327 (437)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787775
No 415
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=71.27 E-value=13 Score=38.11 Aligned_cols=58 Identities=19% Similarity=0.115 Sum_probs=46.3
Q ss_pred HHhcCCCcEEEEecchHHHHHHHHHHHh----cCCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC
Q 013727 248 LTEVSASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311 (437)
Q Consensus 248 l~~~~~~~~iVf~~s~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 311 (437)
+....+..++|.++|...|.+.++.+.. .|+.+..+.|+++..+|.... .++|+++|+
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 3445667899999999998887776654 589999999999987776654 479999996
No 416
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=71.16 E-value=2.5 Score=41.65 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 417
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=71.13 E-value=2.3 Score=34.46 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+++.|++|||||+.
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999985
No 418
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=70.77 E-value=4.9 Score=37.70 Aligned_cols=68 Identities=7% Similarity=-0.053 Sum_probs=46.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEE
Q 013727 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (437)
Q Consensus 82 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~v 161 (437)
..+++|+||++.-++.+++.++.. +.++..++|+..............+|+|+|. .+.. .++++ +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----v~e~--GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----ISEM--GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----GGGT--SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----hHHc--CcccC-CcEE
Confidence 446999999999999999998876 4678888887433222222234689999993 3443 35666 5554
No 419
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=70.76 E-value=3.7 Score=39.09 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
.-+.+.|++|||||+.
T Consensus 294 eVI~LVGpNGSGKTTL 309 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTT 309 (503)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCcccHHHH
Confidence 4578999999999985
No 420
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=70.74 E-value=3.2 Score=29.60 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=31.6
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHM 287 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 287 (437)
+..++++||.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 456899999999999999999999999888888874
No 421
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=70.60 E-value=11 Score=38.62 Aligned_cols=71 Identities=13% Similarity=0.190 Sum_probs=47.9
Q ss_pred CCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-----CCCC-C-CCCC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-----ASRG-L-DIPS 321 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~G-i-d~~~ 321 (437)
+.++||.|+++..+......++.. ++.+..++|+.+...+...+. +..+|+|+|.- +..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 778999999999988877777664 889999999987665433332 25789999951 2222 3 5666
Q ss_pred CCEEEE
Q 013727 322 VDMVIN 327 (437)
Q Consensus 322 ~~~Vi~ 327 (437)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788775
No 422
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=70.60 E-value=2.4 Score=34.05 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|..+++.|+.|||||+.
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355688999999999975
No 423
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=70.55 E-value=3.6 Score=39.49 Aligned_cols=53 Identities=13% Similarity=-0.055 Sum_probs=30.8
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 013727 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 103 (437)
+..|.-+++.|++|+|||...+-.+...... .+..++|+.-- .-..|+..++.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~--------~g~~vl~~s~E-~s~~~l~~r~~ 291 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTA--------MGKKVGLAMLE-ESVEETAEDLI 291 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTT--------SCCCEEEEESS-SCHHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHh--------cCCcEEEEecc-CCHHHHHHHHH
Confidence 4456778999999999997543333322211 14457776543 23456655543
No 424
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=70.54 E-value=2 Score=35.40 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
..+++.|++|||||+.
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3578999999999985
No 425
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=70.22 E-value=2 Score=36.61 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467889999999999973
No 426
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=70.20 E-value=3.7 Score=40.48 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=19.2
Q ss_pred HHHhhhcCCcEEEEcCCCchHHHH
Q 013727 38 AIPHALEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 38 ~~~~~~~~~~~lv~~~tGsGKT~~ 61 (437)
+-..+..+..+++.||+|+|||..
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHH
T ss_pred ccccccCCCEEEEEeCCCCCHHHH
Confidence 334455678999999999999975
No 427
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=70.19 E-value=1.2 Score=40.26 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
..++++.||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 35799999999999974
No 428
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=70.06 E-value=2.6 Score=34.57 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=14.0
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
..+++.|++|||||+.
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999985
No 429
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=70.05 E-value=2.2 Score=35.65 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=21.8
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCC
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~ 186 (437)
+.+.+++++||--.-+|......+..++..+.
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 180 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 44567788888887777766666666655543
No 430
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=70.05 E-value=4.1 Score=28.60 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=30.7
Q ss_pred CcEEEEecchHHHHHHHHHHHhcCCceEeccCCCC
Q 013727 254 SSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMS 288 (437)
Q Consensus 254 ~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~ 288 (437)
.++++||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 77999999988899999999999998778888753
No 431
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=69.79 E-value=1.6 Score=35.19 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=10.7
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.|++|||||+.
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999985
No 432
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=69.75 E-value=2.7 Score=34.44 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+++.|++|||||+.
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478999999999974
No 433
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=69.72 E-value=2.6 Score=39.55 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 013727 46 KDLIGLAQTGSGKTGAFAL 64 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~~~~ 64 (437)
..+++.|++|+|||....-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3688999999999986543
No 434
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=69.61 E-value=2.5 Score=46.00 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=24.4
Q ss_pred CCCccEEEEcccccccccccHHHHHHHHHhCCccc
Q 013727 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189 (437)
Q Consensus 155 ~~~~~~vViDE~h~~~~~~~~~~~~~i~~~~~~~~ 189 (437)
+++-+++|+||+=--+|..-...+...+..+.+.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~ 604 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGR 604 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTS
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 45567899999998888766666666665544444
No 435
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=69.59 E-value=4.4 Score=34.40 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=49.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-----C---CCCCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-----A---SRGLDI 319 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~---~~Gid~ 319 (437)
.+.++||.+++++.+..+++.++.. +..+..++++.... ........+..+|+|+|+- + ...+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999999999888875 55566665542111 1112223467799999951 1 125788
Q ss_pred CCCCEEEEec
Q 013727 320 PSVDMVINYD 329 (437)
Q Consensus 320 ~~~~~Vi~~~ 329 (437)
.+++++|.-.
T Consensus 174 ~~~~~lViDE 183 (245)
T 3dkp_A 174 ASVEWLVVDE 183 (245)
T ss_dssp TTCCEEEESS
T ss_pred ccCcEEEEeC
Confidence 8888887543
No 436
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=69.48 E-value=2.7 Score=34.65 Aligned_cols=15 Identities=33% Similarity=0.133 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+.+.|+.|||||++
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999985
No 437
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=69.36 E-value=3 Score=38.22 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 013727 47 DLIGLAQTGSGKTGAF 62 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~ 62 (437)
-.++.||+|||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5779999999999754
No 438
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=69.33 E-value=2.9 Score=34.59 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+++.|+.|||||+.
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 456789999999999985
No 439
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=69.32 E-value=2.9 Score=33.04 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+++.|++|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999985
No 440
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=69.27 E-value=3.5 Score=43.16 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=41.4
Q ss_pred ccCccccC-C-CHHHHHHHHhCCCCCChH----HHHHHHHhhhc---CCcEEEEcCCCchHHHHHHHHHHHHHHH
Q 013727 7 VKTFKELG-L-RDELVEACENVGWKTPSK----IQAEAIPHALE---GKDLIGLAQTGSGKTGAFALPILQALLE 72 (437)
Q Consensus 7 ~~~f~~~~-l-~~~~~~~l~~~g~~~~~~----~Q~~~~~~~~~---~~~~lv~~~tGsGKT~~~~~~~~~~l~~ 72 (437)
+++|..++ + +++.++..+......+-| +-..|...++. .+.+++.|.+|||||.+.-+ ++.++..
T Consensus 97 VNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~-im~yLa~ 170 (1052)
T 4anj_A 97 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF-VLRYLTE 170 (1052)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHHH
T ss_pred ECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH-HHHHHHH
Confidence 45788885 4 778887776554433333 33444444443 36899999999999987543 4555543
No 441
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=69.19 E-value=2.9 Score=34.88 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.|++|||||+.
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 35689999999999985
No 442
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=69.06 E-value=2.2 Score=36.91 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
.-+++.|++|||||..
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 4588999999999985
No 443
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=68.88 E-value=3.8 Score=34.12 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=47.6
Q ss_pred CCcEEEEecchHHHHHHHHHHHhc--------CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcC-----CCCC-CCC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNL--------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VASR-GLD 318 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~-Gid 318 (437)
+.++||.+++++.+..+++.++.. +..+..++|+.+..+.. ..+ ....+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 467999999999999888877654 56777788876543321 111 24678999995 2222 356
Q ss_pred CCCCCEEEE
Q 013727 319 IPSVDMVIN 327 (437)
Q Consensus 319 ~~~~~~Vi~ 327 (437)
+.+++++|.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 667777765
No 444
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=68.87 E-value=3 Score=33.49 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
-.++.||+|||||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 568999999999974
No 445
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=68.74 E-value=3.7 Score=39.07 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 013727 45 GKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~ 62 (437)
..++++.||+|+|||...
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 358999999999999753
No 446
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=68.74 E-value=2.9 Score=34.42 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+.+.|++|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999974
No 447
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=68.57 E-value=3.3 Score=29.91 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=31.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHM 287 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 287 (437)
...+++|+|.+-..+...+..|...|+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 456789999998889999999999999988888774
No 448
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=68.54 E-value=2.2 Score=37.29 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999973
No 449
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=68.50 E-value=2.3 Score=34.65 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHH
Q 013727 48 LIGLAQTGSGKTGAF 62 (437)
Q Consensus 48 ~lv~~~tGsGKT~~~ 62 (437)
+++.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999853
No 450
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=68.48 E-value=3.2 Score=35.68 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+..+.+.||+|||||+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999974
No 451
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=68.42 E-value=3.3 Score=29.74 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=31.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCceEeccCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHM 287 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 287 (437)
...++++||.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 456799999998889999999999999888888874
No 452
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=68.38 E-value=2.8 Score=34.84 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+++.|++|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999985
No 453
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=68.20 E-value=2.5 Score=37.76 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAFA 63 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~~ 63 (437)
.+..+++.||+|+|||...+
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34567999999999997544
No 454
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=68.16 E-value=68 Score=28.82 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHH
Q 013727 47 DLIGLAQTGSGKTGAF 62 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~ 62 (437)
.+.+.|++|+|||..+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999754
No 455
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=68.16 E-value=3.1 Score=39.05 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
.+++++.||+|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 36899999999999975
No 456
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=68.13 E-value=3.2 Score=34.35 Aligned_cols=19 Identities=16% Similarity=0.136 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~ 62 (437)
.+..+++.|+.|||||+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999853
No 457
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=68.04 E-value=2.4 Score=35.92 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567889999999999973
No 458
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=67.68 E-value=2.4 Score=37.65 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|..+.+.||+|||||+.
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 467889999999999974
No 459
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=67.66 E-value=2.4 Score=36.68 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|..+.+.||.|||||+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999973
No 460
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=67.52 E-value=2.4 Score=36.38 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567889999999999973
No 461
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=67.27 E-value=3.2 Score=33.62 Aligned_cols=15 Identities=33% Similarity=0.189 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+++.|+.|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368899999999985
No 462
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=67.21 E-value=3.2 Score=35.39 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q 013727 45 GKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~ 61 (437)
+..+++.||.|||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45789999999999974
No 463
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=67.12 E-value=3.3 Score=34.78 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+++.|++|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999985
No 464
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=66.96 E-value=2.9 Score=33.52 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGAF 62 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~~ 62 (437)
.|+-+++.|+.|+|||..+
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 3567999999999999764
No 465
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=66.92 E-value=2.4 Score=35.71 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999973
No 466
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=66.73 E-value=45 Score=31.64 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=48.2
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHh----CCCCcEEEECchHHHHHHhcCCCCCCCCcc
Q 013727 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLK 159 (437)
Q Consensus 84 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~ 159 (437)
..++++.+..-+..+.+.+...+ .++..++|+.+.......+ ....+|+|+|+..+.. ++++..++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~------GiDip~v~ 418 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST------GISVKNLH 418 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH------SCCCCSEE
T ss_pred CeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc------ccccccCc
Confidence 34444444555555666666543 4778888887755433222 3457899999765533 36888899
Q ss_pred EEEEcccc
Q 013727 160 YLVLDEAD 167 (437)
Q Consensus 160 ~vViDE~h 167 (437)
+||+....
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99998877
No 467
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=66.69 E-value=6.9 Score=43.30 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=27.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 013727 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (437)
Q Consensus 45 ~~~~lv~~~tGsGKT~~~~~~~~~~l~~~~~~~~~~~~~~~lvl~P~~ 92 (437)
++.+++.|++|||||...+..+...+. .+..++|+.-..
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~---------~G~~vlYI~te~ 72 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEH 72 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---------TTCCEEEECTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh---------CCCceEEEEecC
Confidence 578999999999999865544444443 455677876554
No 468
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=66.69 E-value=2.5 Score=36.69 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467789999999999973
No 469
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=66.63 E-value=3.2 Score=32.78 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 013727 43 LEGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 43 ~~~~~~lv~~~tGsGKT~~ 61 (437)
..|.-+.+.||.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4566788999999999973
No 470
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=66.43 E-value=5.7 Score=28.64 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhcCCc-eEeccCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNLGQR-AIPISGHM 287 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~~~~-~~~~~~~~ 287 (437)
...+++|||.+-..+...+..|...|+. +..+.|++
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 4567999999988899999999999985 88888874
No 471
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=66.35 E-value=3.3 Score=33.86 Aligned_cols=15 Identities=27% Similarity=0.189 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
.+.+.|++|||||++
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999985
No 472
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=66.30 E-value=2 Score=37.01 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
..+++.|++|||||+.
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4589999999999975
No 473
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.13 E-value=2.7 Score=35.90 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999973
No 474
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=65.95 E-value=2.7 Score=36.32 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999973
No 475
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=65.93 E-value=2.3 Score=36.34 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|..+.+.||.|||||+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999973
No 476
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=65.87 E-value=2.8 Score=36.32 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999973
No 477
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=65.68 E-value=2.6 Score=38.69 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHH
Q 013727 48 LIGLAQTGSGKTGAF 62 (437)
Q Consensus 48 ~lv~~~tGsGKT~~~ 62 (437)
.++.|+||+|||...
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 478
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=65.56 E-value=11 Score=37.17 Aligned_cols=69 Identities=12% Similarity=-0.043 Sum_probs=47.2
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccEE
Q 013727 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (437)
Q Consensus 82 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~v 161 (437)
..++||.|+++.-++.+++.++.. ++++..++|...............+|+|+|. .+.. .+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~r--GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGT--TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHc--CcccC-ceEE
Confidence 446999999999999999999876 4677788875433222222234688999993 3443 35664 7776
Q ss_pred E
Q 013727 162 V 162 (437)
Q Consensus 162 V 162 (437)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 479
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=65.42 E-value=2.9 Score=36.07 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467789999999999973
No 480
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=64.86 E-value=3 Score=35.84 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|..+.+.||.|||||+.
T Consensus 25 ~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567789999999999973
No 481
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=64.60 E-value=3 Score=34.72 Aligned_cols=16 Identities=25% Similarity=0.156 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
..+.+.|+.|||||++
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578999999999985
No 482
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=64.56 E-value=3 Score=35.95 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp TTCEEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999973
No 483
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=64.55 E-value=4.9 Score=38.85 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=20.9
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHHHHH
Q 013727 42 ALEGKDLIGLAQTGSGKTGAFALPILQALL 71 (437)
Q Consensus 42 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~l~ 71 (437)
+..|..+++.||+|||||+.....++.-+.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345688999999999999864433334443
No 484
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=64.53 E-value=3 Score=36.21 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467789999999999973
No 485
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=64.31 E-value=3.1 Score=36.29 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|..+.+.||.|||||+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467889999999999973
No 486
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=64.17 E-value=4 Score=33.57 Aligned_cols=16 Identities=31% Similarity=-0.047 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchHHHH
Q 013727 46 KDLIGLAQTGSGKTGA 61 (437)
Q Consensus 46 ~~~lv~~~tGsGKT~~ 61 (437)
.-+.+.|++|||||+.
T Consensus 23 ~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588899999999975
No 487
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=64.11 E-value=3.2 Score=35.99 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 467789999999999973
No 488
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=63.54 E-value=4.4 Score=33.18 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 013727 47 DLIGLAQTGSGKTGAF 62 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~ 62 (437)
.+.+.|++|||||++.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999853
No 489
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=63.42 E-value=3.2 Score=36.31 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 46 ~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467789999999999973
No 490
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=63.41 E-value=30 Score=30.44 Aligned_cols=71 Identities=21% Similarity=0.363 Sum_probs=50.7
Q ss_pred CCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC------CCCCCCCCCC
Q 013727 253 ASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV------ASRGLDIPSV 322 (437)
Q Consensus 253 ~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~Gid~~~~ 322 (437)
+.++||.++++..+...++.++.. +..+..++|+.+..+....+ . ..+|+|+|.- ....+++.++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 678999999999999988888754 46788889988776544333 2 3789999952 1223456667
Q ss_pred CEEEEe
Q 013727 323 DMVINY 328 (437)
Q Consensus 323 ~~Vi~~ 328 (437)
++||.-
T Consensus 131 ~~iViD 136 (337)
T 2z0m_A 131 EIVIID 136 (337)
T ss_dssp SEEEEE
T ss_pred cEEEEE
Confidence 777753
No 491
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=63.39 E-value=4.3 Score=35.27 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999973
No 492
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=63.34 E-value=5.2 Score=35.78 Aligned_cols=15 Identities=13% Similarity=-0.002 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
-+.+.||+|||||+.
T Consensus 94 iigI~GpsGSGKSTl 108 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT 108 (321)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 493
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=63.33 E-value=4.1 Score=34.94 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.|.-+.+.||.|||||+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567889999999999973
No 494
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=62.97 E-value=6.3 Score=39.95 Aligned_cols=64 Identities=20% Similarity=0.337 Sum_probs=38.6
Q ss_pred ccCcccc-CC-CHHHHHHHHhCCCCC--C--hHHHHHHHHhhhc---CCcEEEEcCCCchHHHHHHHHHHHHHH
Q 013727 7 VKTFKEL-GL-RDELVEACENVGWKT--P--SKIQAEAIPHALE---GKDLIGLAQTGSGKTGAFALPILQALL 71 (437)
Q Consensus 7 ~~~f~~~-~l-~~~~~~~l~~~g~~~--~--~~~Q~~~~~~~~~---~~~~lv~~~tGsGKT~~~~~~~~~~l~ 71 (437)
+++|..+ ++ +++.++..+...... | +.+=..|+..++. .+.+++.|..|+|||.+.=+ ++.++.
T Consensus 93 VNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-i~~yla 165 (784)
T 2v26_A 93 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF-VLRYLT 165 (784)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred ecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHH-HHHHHH
Confidence 4567777 33 566666665443332 3 3333455555543 46799999999999987433 444444
No 495
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=62.75 E-value=15 Score=33.33 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=52.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHhc----CCceEeccCCCCHHHHHHHHHHhhCCCceEEEEcCC-----C-CCCCCCCC
Q 013727 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-----A-SRGLDIPS 321 (437)
Q Consensus 252 ~~~~~iVf~~s~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~~Gid~~~ 321 (437)
.+.++||.++++..+...++.+... +..+..++|+.+..+....+. ..+|+|+|.- + ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999998888877653 577888999988766555443 4689999951 1 23455667
Q ss_pred CCEEEEec
Q 013727 322 VDMVINYD 329 (437)
Q Consensus 322 ~~~Vi~~~ 329 (437)
+++||.-.
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 77777533
No 496
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=62.37 E-value=3.5 Score=36.41 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
-+++.|++|||||+.
T Consensus 4 ~I~l~G~~GsGKST~ 18 (301)
T 1ltq_A 4 IILTIGCPGSGKSTW 18 (301)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999985
No 497
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=62.29 E-value=4.5 Score=35.60 Aligned_cols=16 Identities=25% Similarity=0.106 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 013727 47 DLIGLAQTGSGKTGAF 62 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~~ 62 (437)
-+.+.|++|||||+..
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999753
No 498
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=62.05 E-value=5.5 Score=32.86 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q 013727 47 DLIGLAQTGSGKTGA 61 (437)
Q Consensus 47 ~~lv~~~tGsGKT~~ 61 (437)
-.++.||+|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 468899999999975
No 499
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=61.83 E-value=10 Score=37.63 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=48.4
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcCCCcEEEEEEcCCChHHHHHHhCCCCcEEEECchHHHHHHhcCCCCCCCCccE
Q 013727 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 160 (437)
Q Consensus 81 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 160 (437)
...++||.++++.-++.+++.++.. ++.+..++|+.+... ....+.+|+|+|. .+.. .+++. +++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~e---r~~~~~~VLVATd-----Vaer--GIDId-V~~ 459 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSV---IPTIGDVVVVATD-----ALMT--GYTGD-FDS 459 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGG---SCSSSCEEEEECT-----THHH--HCCCC-BSE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHH---HHhCCCcEEEECC-----hHHc--cCCCC-CcE
Confidence 4567999999999999999888864 578888999877543 2234568999993 2333 24554 777
Q ss_pred EE
Q 013727 161 LV 162 (437)
Q Consensus 161 vV 162 (437)
||
T Consensus 460 VI 461 (666)
T 3o8b_A 460 VI 461 (666)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 500
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=61.73 E-value=4.1 Score=34.74 Aligned_cols=18 Identities=22% Similarity=-0.008 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCchHHHH
Q 013727 44 EGKDLIGLAQTGSGKTGA 61 (437)
Q Consensus 44 ~~~~~lv~~~tGsGKT~~ 61 (437)
.+.-+.+.||.|||||+.
T Consensus 24 ~g~iigI~G~~GsGKSTl 41 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTV 41 (245)
T ss_dssp CSEEEEEECSTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 344578899999999985
Done!