Query 013729
Match_columns 437
No_of_seqs 368 out of 3511
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:48:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02948 phosphoribosylaminoim 100.0 6.3E-84 1.4E-88 678.6 53.1 435 2-436 141-577 (577)
2 COG0041 PurE Phosphoribosylcar 100.0 5.6E-51 1.2E-55 342.9 17.5 158 271-428 4-161 (162)
3 TIGR01162 purE phosphoribosyla 100.0 6.6E-48 1.4E-52 332.3 16.5 155 272-426 1-155 (156)
4 PF00731 AIRC: AIR carboxylase 100.0 3.9E-44 8.5E-49 309.2 11.7 150 270-419 1-150 (150)
5 PLN02735 carbamoyl-phosphate s 100.0 4.1E-41 8.9E-46 376.1 30.8 355 2-397 722-1088(1102)
6 PRK06019 phosphoribosylaminoim 100.0 3.9E-40 8.4E-45 332.5 31.2 247 2-258 120-366 (372)
7 COG0026 PurK Phosphoribosylami 100.0 4.4E-40 9.5E-45 317.6 29.2 247 2-257 119-365 (375)
8 PRK12815 carB carbamoyl phosph 100.0 3.3E-40 7.1E-45 370.1 32.8 357 2-399 690-1054(1068)
9 TIGR01369 CPSaseII_lrg carbamo 100.0 6.6E-39 1.4E-43 359.5 31.2 340 2-380 689-1038(1050)
10 PRK05294 carB carbamoyl phosph 100.0 4.9E-38 1.1E-42 353.6 32.6 353 2-395 689-1050(1066)
11 TIGR01161 purK phosphoribosyla 100.0 4.6E-37 1E-41 308.2 29.7 235 2-245 118-352 (352)
12 TIGR01142 purT phosphoribosylg 100.0 4.8E-35 1E-39 296.6 31.7 253 2-261 121-378 (380)
13 PRK09288 purT phosphoribosylgl 100.0 2.4E-33 5.3E-38 285.5 31.8 254 2-262 134-392 (395)
14 COG0027 PurT Formate-dependent 100.0 8E-34 1.7E-38 265.2 24.5 252 3-261 135-391 (394)
15 PRK08654 pyruvate carboxylase 100.0 1.7E-32 3.8E-37 285.2 30.1 288 3-307 138-443 (499)
16 PRK05586 biotin carboxylase; V 100.0 9.3E-32 2E-36 277.9 30.1 285 2-302 137-439 (447)
17 TIGR00514 accC acetyl-CoA carb 100.0 2.6E-31 5.7E-36 274.8 32.0 286 3-303 138-440 (449)
18 PRK12833 acetyl-CoA carboxylas 100.0 1.5E-31 3.2E-36 277.4 29.0 288 2-304 140-444 (467)
19 PRK07178 pyruvate carboxylase 100.0 4.9E-31 1.1E-35 273.8 32.1 287 3-304 137-440 (472)
20 COG4770 Acetyl/propionyl-CoA c 100.0 2.6E-32 5.6E-37 272.5 20.9 285 3-304 138-441 (645)
21 KOG0238 3-Methylcrotonyl-CoA c 100.0 7.3E-32 1.6E-36 265.1 23.3 286 3-307 134-441 (670)
22 PRK08463 acetyl-CoA carboxylas 100.0 6.3E-31 1.4E-35 273.3 30.1 286 4-304 139-441 (478)
23 COG1038 PycA Pyruvate carboxyl 100.0 1.3E-30 2.9E-35 267.2 27.0 304 3-326 144-472 (1149)
24 PF02222 ATP-grasp: ATP-grasp 100.0 3.7E-31 7.9E-36 236.8 20.2 159 2-162 13-172 (172)
25 COG0439 AccC Biotin carboxylas 100.0 4.5E-30 9.7E-35 259.5 27.8 285 3-303 138-440 (449)
26 PRK08591 acetyl-CoA carboxylas 100.0 8.2E-30 1.8E-34 264.0 30.2 286 2-303 137-440 (451)
27 TIGR01235 pyruv_carbox pyruvat 100.0 4.7E-30 1E-34 285.9 29.3 289 3-307 138-451 (1143)
28 KOG0370 Multifunctional pyrimi 100.0 1.1E-30 2.5E-35 270.6 22.4 332 2-380 1053-1393(1435)
29 PRK08462 biotin carboxylase; V 100.0 1.4E-29 2.9E-34 261.8 30.0 285 3-304 140-441 (445)
30 PF02786 CPSase_L_D2: Carbamoy 100.0 3E-30 6.4E-35 239.2 22.1 178 3-181 24-210 (211)
31 PRK12999 pyruvate carboxylase; 100.0 9.8E-30 2.1E-34 284.7 30.4 295 3-316 142-461 (1146)
32 PRK12815 carB carbamoyl phosph 100.0 1E-29 2.2E-34 285.7 25.3 244 2-259 148-402 (1068)
33 TIGR01369 CPSaseII_lrg carbamo 100.0 3.3E-29 7.2E-34 281.3 25.5 243 2-259 147-401 (1050)
34 PRK05294 carB carbamoyl phosph 100.0 5.6E-29 1.2E-33 280.4 26.0 241 2-258 148-402 (1066)
35 PRK06111 acetyl-CoA carboxylas 100.0 6.5E-28 1.4E-32 249.8 30.4 284 3-302 138-438 (450)
36 PLN02735 carbamoyl-phosphate s 100.0 1.7E-28 3.6E-33 275.0 27.1 242 2-258 164-419 (1102)
37 TIGR02712 urea_carbox urea car 100.0 2.9E-27 6.3E-32 266.2 36.0 346 3-379 136-502 (1201)
38 KOG0369 Pyruvate carboxylase [ 100.0 4.8E-27 1E-31 236.9 24.3 292 2-311 169-482 (1176)
39 KOG2835 Phosphoribosylamidoimi 100.0 1.6E-29 3.5E-34 243.3 5.2 367 57-436 3-373 (373)
40 COG0458 CarB Carbamoylphosphat 99.9 8.3E-26 1.8E-30 221.2 21.2 242 3-258 136-388 (400)
41 PRK13789 phosphoribosylamine-- 99.9 2.2E-24 4.8E-29 220.7 30.2 253 3-262 129-412 (426)
42 PRK00885 phosphoribosylamine-- 99.9 9.4E-25 2E-29 224.2 27.2 249 2-262 122-404 (420)
43 PRK06395 phosphoribosylamine-- 99.9 1.9E-24 4.2E-29 221.7 28.2 252 4-261 128-408 (435)
44 PRK07206 hypothetical protein; 99.9 1.4E-24 3E-29 222.7 27.1 248 3-258 129-406 (416)
45 PRK02186 argininosuccinate lya 99.9 2.1E-24 4.6E-29 239.6 28.1 253 2-262 127-394 (887)
46 PLN02257 phosphoribosylamine-- 99.9 2.2E-23 4.7E-28 213.6 30.9 256 2-262 122-411 (434)
47 TIGR00877 purD phosphoribosyla 99.9 1.3E-23 2.9E-28 215.9 29.3 254 2-262 124-408 (423)
48 PRK13790 phosphoribosylamine-- 99.9 1.7E-23 3.6E-28 211.7 29.2 248 3-262 88-362 (379)
49 KOG0368 Acetyl-CoA carboxylase 99.9 2.9E-24 6.4E-29 230.6 20.4 256 2-262 224-517 (2196)
50 PRK06524 biotin carboxylase-li 99.9 1.8E-22 4E-27 205.3 22.8 176 3-181 165-357 (493)
51 COG1691 NCAIR mutase (PurE)-re 99.9 1.1E-22 2.4E-27 182.4 13.4 126 268-399 116-249 (254)
52 COG0151 PurD Phosphoribosylami 99.9 1.7E-20 3.6E-25 184.5 26.0 254 3-262 124-409 (428)
53 PF13535 ATP-grasp_4: ATP-gras 99.9 1.2E-21 2.6E-26 177.7 16.4 148 2-154 24-182 (184)
54 PF07478 Dala_Dala_lig_C: D-al 99.9 6.4E-21 1.4E-25 176.2 21.3 142 9-154 25-178 (203)
55 PRK05784 phosphoribosylamine-- 99.9 1.9E-20 4.2E-25 193.8 26.9 253 3-262 131-432 (486)
56 KOG0370 Multifunctional pyrimi 99.9 5.3E-23 1.2E-27 214.0 5.1 244 2-259 518-770 (1435)
57 PRK12767 carbamoyl phosphate s 99.9 1.6E-20 3.4E-25 186.4 22.1 166 3-182 132-300 (326)
58 PRK01966 ddl D-alanyl-alanine 99.9 7.1E-21 1.5E-25 189.5 19.5 140 9-154 154-304 (333)
59 PRK14572 D-alanyl-alanine synt 99.9 2.1E-20 4.6E-25 187.1 20.2 147 5-154 159-318 (347)
60 PRK14570 D-alanyl-alanine synt 99.9 2.8E-20 6E-25 186.7 21.0 146 5-154 158-319 (364)
61 PRK14568 vanB D-alanine--D-lac 99.9 2E-20 4.3E-25 187.0 18.9 157 13-181 161-331 (343)
62 PRK14569 D-alanyl-alanine synt 99.8 6.9E-20 1.5E-24 179.5 18.6 139 12-154 125-268 (296)
63 PRK01372 ddl D-alanine--D-alan 99.8 2.1E-19 4.6E-24 176.7 20.2 149 3-154 119-273 (304)
64 PRK14571 D-alanyl-alanine synt 99.8 1.9E-19 4E-24 176.8 19.3 138 13-154 121-268 (299)
65 PRK14573 bifunctional D-alanyl 99.8 3.3E-19 7.1E-24 196.9 20.7 145 9-154 602-759 (809)
66 TIGR01205 D_ala_D_alaTIGR D-al 99.8 5.2E-19 1.1E-23 174.7 20.0 141 11-154 140-288 (315)
67 PF15632 ATPgrasp_Ter: ATP-gra 99.8 1.2E-18 2.6E-23 170.7 16.6 166 2-182 127-311 (329)
68 PF01071 GARS_A: Phosphoribosy 99.8 2E-17 4.3E-22 149.8 19.7 149 2-154 22-192 (194)
69 TIGR00768 rimK_fam alpha-L-glu 99.7 8.2E-17 1.8E-21 155.8 16.9 159 3-172 109-275 (277)
70 PF02655 ATP-grasp_3: ATP-gras 99.7 1.1E-16 2.4E-21 142.8 13.1 126 16-153 30-160 (161)
71 PRK13277 5-formaminoimidazole- 99.7 3.5E-16 7.5E-21 153.4 17.6 156 14-172 149-339 (366)
72 TIGR02144 LysX_arch Lysine bio 99.7 2.7E-16 6E-21 152.7 16.9 162 3-175 108-276 (280)
73 PRK06849 hypothetical protein; 99.7 3.8E-16 8.3E-21 158.9 15.8 145 3-158 137-283 (389)
74 COG2232 Predicted ATP-dependen 99.7 5.3E-16 1.1E-20 147.0 15.2 215 17-259 149-371 (389)
75 PRK10446 ribosomal protein S6 99.7 8.8E-16 1.9E-20 150.8 16.5 161 3-177 120-289 (300)
76 COG1181 DdlA D-alanine-D-alani 99.7 6.9E-16 1.5E-20 151.3 15.4 144 8-154 133-289 (317)
77 PRK13278 purP 5-formaminoimida 99.7 1.6E-15 3.5E-20 150.8 18.1 136 15-152 147-313 (358)
78 PF08443 RimK: RimK-like ATP-g 99.6 1.2E-14 2.6E-19 133.2 14.3 158 3-172 24-188 (190)
79 KOG0237 Glycinamide ribonucleo 99.6 3.2E-13 6.9E-18 136.2 23.9 255 2-262 128-413 (788)
80 PRK14016 cyanophycin synthetas 99.4 7.3E-12 1.6E-16 136.4 16.1 166 3-174 235-471 (727)
81 COG0189 RimK Glutathione synth 99.4 1.1E-11 2.3E-16 122.1 15.7 142 3-153 140-291 (318)
82 TIGR03103 trio_acet_GNAT GNAT- 99.4 1.2E-11 2.5E-16 130.7 15.1 147 3-156 318-527 (547)
83 TIGR01435 glu_cys_lig_rel glut 99.3 4.5E-11 9.7E-16 128.3 14.9 145 3-153 496-714 (737)
84 TIGR02068 cya_phycin_syn cyano 99.2 1.8E-10 3.9E-15 127.9 16.6 168 2-175 233-471 (864)
85 PRK02471 bifunctional glutamat 99.2 1.9E-10 4E-15 125.2 15.0 148 3-156 509-731 (752)
86 PLN02941 inositol-tetrakisphos 99.2 2.8E-10 6.1E-15 111.9 13.7 144 3-157 135-310 (328)
87 COG3919 Predicted ATP-grasp en 99.2 3.2E-11 7E-16 113.1 5.2 139 8-153 138-290 (415)
88 COG1821 Predicted ATP-utilizin 99.1 1.4E-10 3.1E-15 106.7 9.1 116 19-153 140-258 (307)
89 PF14398 ATPgrasp_YheCD: YheC/ 99.1 4.3E-09 9.4E-14 101.2 19.7 149 3-154 42-236 (262)
90 PRK12458 glutathione synthetas 99.0 4.5E-09 9.7E-14 104.8 14.1 156 3-174 147-321 (338)
91 TIGR02291 rimK_rel_E_lig alpha 98.9 4.4E-08 9.6E-13 95.9 16.7 46 108-154 228-273 (317)
92 TIGR01380 glut_syn glutathione 98.8 2.1E-07 4.6E-12 91.9 18.2 152 3-173 140-307 (312)
93 PRK05234 mgsA methylglyoxal sy 98.8 2.2E-08 4.8E-13 86.9 8.5 121 273-412 7-137 (142)
94 PRK05246 glutathione synthetas 98.8 9.6E-08 2.1E-12 94.6 13.3 155 3-174 141-309 (316)
95 cd00532 MGS-like MGS-like doma 98.7 6.7E-08 1.5E-12 80.7 7.3 94 274-380 3-104 (112)
96 cd01422 MGS Methylglyoxal synt 98.6 7.6E-08 1.6E-12 80.7 5.5 93 275-380 4-106 (115)
97 TIGR01016 sucCoAbeta succinyl- 98.6 1.5E-06 3.2E-11 88.5 15.9 77 2-78 24-117 (386)
98 PF02955 GSH-S_ATP: Prokaryoti 98.5 2E-06 4.3E-11 77.2 12.4 134 3-152 18-163 (173)
99 cd01424 MGS_CPS_II Methylglyox 98.5 3.9E-07 8.4E-12 75.8 7.4 94 274-380 4-100 (110)
100 PRK00696 sucC succinyl-CoA syn 98.4 1.4E-05 3E-10 81.5 17.3 81 2-83 24-123 (388)
101 cd01423 MGS_CPS_I_III Methylgl 98.4 4.6E-07 1E-11 76.1 5.3 94 274-380 4-106 (116)
102 PF14397 ATPgrasp_ST: Sugar-tr 98.3 1.6E-05 3.5E-10 77.4 14.8 145 3-152 58-261 (285)
103 COG1759 5-formaminoimidazole-4 98.3 1.6E-05 3.4E-10 76.2 13.9 137 15-153 148-317 (361)
104 PF05770 Ins134_P3_kin: Inosit 98.1 2E-05 4.4E-10 76.8 10.8 128 14-153 135-291 (307)
105 PF02750 Synapsin_C: Synapsin, 97.9 0.00012 2.7E-09 65.7 10.9 126 15-150 48-177 (203)
106 PF03133 TTL: Tubulin-tyrosine 97.7 0.00023 5E-09 69.6 11.0 42 19-64 67-108 (292)
107 smart00851 MGS MGS-like domain 97.6 8.6E-05 1.9E-09 59.3 4.5 83 285-380 2-90 (90)
108 PF02142 MGS: MGS-like domain 97.5 1.4E-05 3E-10 64.7 -1.4 83 285-380 2-95 (95)
109 PF13549 ATP-grasp_5: ATP-gras 97.3 0.0026 5.6E-08 59.6 11.5 84 2-85 31-130 (222)
110 PLN00124 succinyl-CoA ligase [ 97.1 0.016 3.5E-07 59.4 15.5 74 2-77 51-151 (422)
111 PRK14046 malate--CoA ligase su 97.1 0.02 4.3E-07 58.4 16.1 83 2-84 24-124 (392)
112 PLN02235 ATP citrate (pro-S)-l 97.0 0.031 6.8E-07 56.8 16.6 79 3-82 34-130 (423)
113 PF06973 DUF1297: Domain of un 97.0 0.016 3.6E-07 51.6 12.6 98 55-153 21-144 (188)
114 PF08442 ATP-grasp_2: ATP-gras 97.0 0.0072 1.6E-07 55.8 10.3 78 2-80 23-118 (202)
115 PF14243 DUF4343: Domain of un 96.9 0.014 3.1E-07 49.9 11.3 115 18-152 2-117 (130)
116 COG0045 SucC Succinyl-CoA synt 96.8 0.0087 1.9E-07 59.5 10.2 79 2-81 24-118 (387)
117 PF14305 ATPgrasp_TupA: TupA-l 96.7 0.058 1.3E-06 51.2 15.1 131 15-153 54-220 (239)
118 smart00878 Biotin_carb_C Bioti 96.6 0.0067 1.4E-07 50.1 6.8 87 193-294 3-96 (107)
119 PF02785 Biotin_carb_C: Biotin 96.6 0.0081 1.7E-07 49.5 7.2 88 192-294 2-96 (107)
120 KOG3895 Synaptic vesicle prote 96.0 0.0051 1.1E-07 59.8 2.9 119 17-149 239-365 (488)
121 PF11379 DUF3182: Protein of u 95.9 0.051 1.1E-06 53.1 9.7 150 1-154 118-298 (355)
122 cd08550 GlyDH-like Glycerol_de 94.6 0.071 1.5E-06 53.5 6.3 86 271-356 24-110 (349)
123 cd08170 GlyDH Glycerol dehydro 94.1 0.12 2.6E-06 51.9 6.8 87 270-356 23-110 (351)
124 cd08195 DHQS Dehydroquinate sy 93.6 0.73 1.6E-05 46.2 11.3 142 270-412 25-194 (345)
125 PF13685 Fe-ADH_2: Iron-contai 93.5 0.03 6.6E-07 53.4 1.1 148 270-418 20-188 (250)
126 KOG2156 Tubulin-tyrosine ligas 93.4 0.87 1.9E-05 47.1 11.2 52 4-64 291-343 (662)
127 PRK00843 egsA NAD(P)-dependent 93.1 0.39 8.5E-06 48.3 8.4 85 270-356 35-120 (350)
128 cd08549 G1PDH_related Glycerol 92.7 0.47 1E-05 47.3 8.3 85 271-356 26-113 (332)
129 PRK09423 gldA glycerol dehydro 92.6 0.29 6.4E-06 49.5 6.7 87 270-356 30-117 (366)
130 cd08173 Gro1PDH Sn-glycerol-1- 92.4 0.58 1.3E-05 46.8 8.6 85 270-356 26-111 (339)
131 cd08551 Fe-ADH iron-containing 92.3 0.2 4.2E-06 50.8 5.1 87 270-356 24-131 (370)
132 KOG2157 Predicted tubulin-tyro 92.1 1.6 3.4E-05 45.7 11.3 48 17-65 199-251 (497)
133 cd08171 GlyDH-like2 Glycerol d 91.8 0.31 6.8E-06 48.8 5.8 87 270-356 23-111 (345)
134 PF14403 CP_ATPgrasp_2: Circul 91.5 0.78 1.7E-05 47.3 8.3 56 7-65 328-385 (445)
135 cd08175 G1PDH Glycerol-1-phosp 91.2 0.48 1E-05 47.5 6.5 85 271-356 25-113 (348)
136 TIGR01357 aroB 3-dehydroquinat 90.8 0.79 1.7E-05 45.9 7.6 137 270-411 21-189 (344)
137 cd08183 Fe-ADH2 Iron-containin 90.6 0.46 1E-05 48.2 5.7 85 270-356 23-130 (374)
138 cd01421 IMPCH Inosine monophos 90.4 0.42 9.1E-06 43.3 4.6 46 274-332 4-49 (187)
139 COG3199 Predicted inorganic po 90.4 2.2 4.8E-05 42.2 9.8 132 237-399 16-157 (355)
140 cd08197 DOIS 2-deoxy-scyllo-in 90.3 1 2.2E-05 45.4 7.8 87 270-356 24-119 (355)
141 PRK00002 aroB 3-dehydroquinate 90.0 1.1 2.3E-05 45.3 7.7 87 270-356 32-127 (358)
142 cd08193 HVD 5-hydroxyvalerate 89.4 0.58 1.3E-05 47.5 5.3 87 270-356 27-134 (376)
143 cd08199 EEVS 2-epi-5-epi-valio 89.2 1.3 2.8E-05 44.6 7.6 86 271-356 28-123 (354)
144 cd08194 Fe-ADH6 Iron-containin 89.2 0.83 1.8E-05 46.3 6.3 86 271-356 25-131 (375)
145 cd08177 MAR Maleylacetate redu 88.0 0.46 1E-05 47.5 3.4 85 271-356 25-110 (337)
146 cd07766 DHQ_Fe-ADH Dehydroquin 87.9 1.2 2.6E-05 44.2 6.3 85 271-356 25-113 (332)
147 cd01452 VWA_26S_proteasome_sub 87.0 9 0.00019 34.9 10.9 75 243-320 84-161 (187)
148 PF00465 Fe-ADH: Iron-containi 86.8 0.66 1.4E-05 46.8 3.8 66 270-335 22-89 (366)
149 cd08182 HEPD Hydroxyethylphosp 86.1 1.4 3.1E-05 44.5 5.8 84 271-356 25-132 (367)
150 cd08181 PPD-like 1,3-propanedi 85.5 2 4.4E-05 43.2 6.5 87 270-356 26-133 (357)
151 cd08176 LPO Lactadehyde:propan 85.5 4.2 9.1E-05 41.2 8.9 86 271-356 30-136 (377)
152 cd08191 HHD 6-hydroxyhexanoate 85.2 1.5 3.3E-05 44.7 5.5 85 270-356 23-130 (386)
153 cd08192 Fe-ADH7 Iron-containin 85.2 1.3 2.8E-05 44.8 5.0 86 271-356 26-136 (370)
154 cd08187 BDH Butanol dehydrogen 84.8 1.8 3.9E-05 44.0 5.8 87 270-356 29-137 (382)
155 cd08189 Fe-ADH5 Iron-containin 84.7 1.2 2.6E-05 45.1 4.5 87 270-356 27-135 (374)
156 cd08185 Fe-ADH1 Iron-containin 84.6 2.2 4.8E-05 43.3 6.4 67 270-336 26-95 (380)
157 cd08178 AAD_C C-terminal alcoh 84.5 1.6 3.4E-05 44.7 5.3 67 270-336 22-90 (398)
158 PLN02834 3-dehydroquinate synt 84.0 3.3 7.2E-05 42.9 7.4 87 270-356 101-198 (433)
159 cd08186 Fe-ADH8 Iron-containin 83.4 2.5 5.5E-05 43.0 6.2 87 270-356 27-136 (383)
160 COG0371 GldA Glycerol dehydrog 83.3 2 4.3E-05 43.1 5.2 86 270-356 31-117 (360)
161 cd08172 GlyDH-like1 Glycerol d 82.6 1.6 3.5E-05 43.7 4.4 84 271-356 25-109 (347)
162 PRK10586 putative oxidoreducta 82.6 3.2 6.8E-05 42.0 6.5 83 271-356 36-119 (362)
163 PRK00881 purH bifunctional pho 82.3 2.9 6.2E-05 43.8 6.1 48 271-332 6-53 (513)
164 cd08169 DHQ-like Dehydroquinat 81.9 9.9 0.00022 38.1 9.7 84 271-356 25-118 (344)
165 cd08179 NADPH_BDH NADPH-depend 80.5 4 8.7E-05 41.4 6.4 66 271-336 25-93 (375)
166 cd08174 G1PDH-like Glycerol-1- 80.3 4 8.6E-05 40.6 6.2 80 270-356 26-108 (331)
167 PF02843 GARS_C: Phosphoribosy 79.4 14 0.0003 29.5 7.9 30 233-262 50-79 (93)
168 TIGR02638 lactal_redase lactal 79.1 3.8 8.3E-05 41.6 5.7 66 271-336 31-98 (379)
169 PRK10624 L-1,2-propanediol oxi 78.2 4.5 9.8E-05 41.1 6.0 86 271-356 32-140 (382)
170 cd08190 HOT Hydroxyacid-oxoaci 78.2 16 0.00035 37.5 10.1 67 270-336 24-92 (414)
171 TIGR00355 purH phosphoribosyla 77.5 5 0.00011 41.9 6.0 46 274-332 4-49 (511)
172 KOG2835 Phosphoribosylamidoimi 77.5 4.3 9.4E-05 40.5 5.3 75 278-355 245-320 (373)
173 PRK09860 putative alcohol dehy 76.1 5.3 0.00012 40.6 5.8 86 271-356 33-139 (383)
174 PRK14021 bifunctional shikimat 75.8 13 0.00029 39.7 8.9 85 271-356 211-304 (542)
175 PRK15454 ethanol dehydrogenase 74.6 5.5 0.00012 40.7 5.5 54 283-336 64-118 (395)
176 cd08188 Fe-ADH4 Iron-containin 74.4 5.3 0.00011 40.5 5.3 67 270-336 29-97 (377)
177 PRK10481 hypothetical protein; 73.5 8.6 0.00019 36.0 6.0 79 270-351 130-210 (224)
178 TIGR01506 ribC_arch riboflavin 72.5 9.4 0.0002 33.4 5.6 46 282-330 12-60 (151)
179 COG1609 PurR Transcriptional r 71.2 52 0.0011 32.6 11.5 104 247-353 29-143 (333)
180 PRK05849 hypothetical protein; 70.3 1.3E+02 0.0028 33.8 15.0 143 5-150 41-215 (783)
181 cd00860 ThrRS_anticodon ThrRS 69.5 23 0.00049 27.2 6.9 57 271-332 3-59 (91)
182 PF06506 PrpR_N: Propionate ca 68.5 11 0.00024 33.8 5.4 83 307-399 16-101 (176)
183 COG1454 EutG Alcohol dehydroge 68.4 27 0.00059 35.4 8.7 86 271-356 31-137 (377)
184 cd08180 PDD 1,3-propanediol de 67.6 9 0.00019 38.1 5.1 85 271-356 24-118 (332)
185 PRK15424 propionate catabolism 67.6 17 0.00037 38.8 7.4 131 269-413 14-153 (538)
186 PRK01372 ddl D-alanine--D-alan 66.6 6.5 0.00014 38.3 3.8 110 269-387 4-123 (304)
187 PLN02891 IMP cyclohydrolase 66.1 10 0.00022 39.9 5.2 48 270-330 22-69 (547)
188 COG0062 Uncharacterized conser 65.9 1.1E+02 0.0024 28.2 11.7 37 269-305 49-85 (203)
189 PRK13805 bifunctional acetalde 64.8 13 0.00028 42.1 6.2 67 270-336 481-551 (862)
190 PF03129 HGTP_anticodon: Antic 63.8 20 0.00043 28.0 5.5 56 272-332 2-60 (94)
191 PRK06203 aroB 3-dehydroquinate 63.3 19 0.00042 36.7 6.6 87 270-356 43-146 (389)
192 cd00861 ProRS_anticodon_short 62.3 20 0.00044 27.9 5.3 57 271-332 3-62 (94)
193 cd08198 DHQS-like2 Dehydroquin 62.0 25 0.00053 35.7 7.0 87 270-356 31-134 (369)
194 cd05013 SIS_RpiR RpiR-like pro 60.1 60 0.0013 26.7 8.3 52 300-356 63-114 (139)
195 cd08184 Fe-ADH3 Iron-containin 58.9 18 0.00039 36.3 5.4 51 286-336 39-93 (347)
196 PF06258 Mito_fiss_Elm1: Mitoc 58.4 1.8E+02 0.004 28.6 12.3 105 268-384 145-258 (311)
197 TIGR02329 propionate_PrpR prop 58.3 37 0.0008 36.2 7.9 95 293-399 24-121 (526)
198 cd00578 L-fuc_L-ara-isomerases 57.6 75 0.0016 33.0 10.0 45 284-330 24-69 (452)
199 cd05014 SIS_Kpsf KpsF-like pro 57.5 67 0.0015 26.4 8.0 50 301-355 51-100 (128)
200 COG2515 Acd 1-aminocyclopropan 57.5 19 0.0004 35.3 4.9 34 324-357 180-217 (323)
201 KOG1057 Arp2/3 complex-interac 57.1 23 0.00049 38.8 5.9 126 17-150 178-322 (1018)
202 TIGR03127 RuMP_HxlB 6-phospho 56.7 74 0.0016 28.2 8.6 78 274-356 34-126 (179)
203 TIGR03405 Phn_Fe-ADH phosphona 56.6 13 0.00027 37.5 3.9 64 271-336 25-92 (355)
204 PF03853 YjeF_N: YjeF-related 56.2 62 0.0013 28.7 7.9 61 268-328 24-85 (169)
205 cd01988 Na_H_Antiporter_C The 56.0 22 0.00047 29.2 4.7 55 283-341 56-111 (132)
206 cd08196 DHQS-like1 Dehydroquin 55.9 41 0.0009 33.7 7.4 51 306-356 55-111 (346)
207 cd05005 SIS_PHI Hexulose-6-pho 55.9 92 0.002 27.6 9.1 79 274-357 37-130 (179)
208 PRK10423 transcriptional repre 54.7 98 0.0021 29.9 9.9 61 269-331 56-119 (327)
209 PRK12757 cell division protein 54.5 82 0.0018 30.1 8.6 64 271-334 184-256 (256)
210 PLN03049 pyridoxine (pyridoxam 53.8 1.7E+02 0.0037 30.6 11.8 36 270-305 60-95 (462)
211 PF00532 Peripla_BP_1: Peripla 53.1 1.3E+02 0.0029 28.7 10.4 106 271-397 3-113 (279)
212 cd00858 GlyRS_anticodon GlyRS 52.3 48 0.001 27.5 6.2 57 270-332 27-85 (121)
213 cd05017 SIS_PGI_PMI_1 The memb 52.2 96 0.0021 25.4 8.0 54 300-356 46-99 (119)
214 PF07065 D123: D123; InterPro 51.4 2.5E+02 0.0054 27.6 13.4 136 7-155 75-243 (299)
215 PRK06455 riboflavin synthase; 51.0 1.5E+02 0.0033 26.1 9.1 95 271-384 3-100 (155)
216 KOG2799 Succinyl-CoA synthetas 50.5 47 0.001 33.2 6.5 48 2-50 46-105 (434)
217 PF04392 ABC_sub_bind: ABC tra 50.2 37 0.00081 32.9 6.0 50 283-332 15-67 (294)
218 cd07304 Chorismate_synthase Ch 50.0 51 0.0011 32.9 6.8 64 311-391 184-250 (344)
219 PRK13761 hypothetical protein; 48.9 82 0.0018 29.5 7.4 69 285-356 83-159 (248)
220 cd00859 HisRS_anticodon HisRS 48.5 73 0.0016 23.9 6.4 56 272-332 4-59 (91)
221 PRK12419 riboflavin synthase s 48.5 80 0.0017 27.9 7.1 58 269-330 10-75 (158)
222 TIGR00736 nifR3_rel_arch TIM-b 46.6 1.1E+02 0.0024 28.8 8.2 88 239-331 72-168 (231)
223 TIGR02990 ectoine_eutA ectoine 46.0 90 0.0019 29.5 7.6 29 270-300 121-149 (239)
224 KOG2158 Tubulin-tyrosine ligas 45.8 13 0.00028 38.2 1.9 38 7-45 216-253 (565)
225 PRK10426 alpha-glucosidase; Pr 45.3 1.4E+02 0.003 32.7 9.8 90 238-331 179-289 (635)
226 cd03522 MoeA_like MoeA_like. T 44.9 2E+02 0.0044 28.4 10.1 68 268-337 158-232 (312)
227 KOG0333 U5 snRNP-like RNA heli 44.1 3.2E+02 0.007 29.1 11.5 100 234-355 490-594 (673)
228 TIGR00365 monothiol glutaredox 44.0 42 0.0009 26.8 4.4 35 270-304 12-49 (97)
229 PRK05575 cbiC precorrin-8X met 43.7 1.7E+02 0.0037 27.0 8.8 86 289-382 84-184 (204)
230 PRK14686 hypothetical protein; 43.7 81 0.0018 26.4 6.2 43 111-153 9-59 (119)
231 PF01380 SIS: SIS domain SIS d 43.7 1.1E+02 0.0023 25.1 7.1 30 301-330 57-86 (131)
232 COG0300 DltE Short-chain dehyd 43.5 3.1E+02 0.0067 26.4 10.9 85 236-333 6-93 (265)
233 COG0794 GutQ Predicted sugar p 43.3 2.7E+02 0.0058 25.7 9.9 82 269-356 39-140 (202)
234 PRK11557 putative DNA-binding 43.1 1.4E+02 0.0031 28.4 8.8 40 300-339 178-217 (278)
235 COG2984 ABC-type uncharacteriz 42.9 55 0.0012 32.3 5.7 69 283-353 46-115 (322)
236 PRK12361 hypothetical protein; 42.7 1.5E+02 0.0032 31.7 9.5 110 243-357 203-331 (547)
237 PRK10927 essential cell divisi 41.8 1.4E+02 0.0029 29.5 8.1 64 270-333 246-318 (319)
238 PRK11914 diacylglycerol kinase 41.5 98 0.0021 30.2 7.5 76 278-357 21-98 (306)
239 TIGR03702 lip_kinase_YegS lipi 41.2 1.2E+02 0.0026 29.4 7.9 73 281-357 12-90 (293)
240 COG4002 Predicted phosphotrans 41.1 67 0.0015 29.6 5.5 82 242-338 113-205 (256)
241 PF07302 AroM: AroM protein; 40.8 90 0.0019 29.2 6.5 19 281-299 163-181 (221)
242 PRK08286 cbiC cobalt-precorrin 40.7 1.9E+02 0.0041 26.9 8.6 41 337-382 147-190 (214)
243 TIGR00393 kpsF KpsF/GutQ famil 39.9 1.6E+02 0.0034 27.9 8.5 39 301-339 51-89 (268)
244 COG3660 Predicted nucleoside-d 39.8 2.7E+02 0.0058 27.0 9.5 103 268-383 160-273 (329)
245 PRK14674 hypothetical protein; 39.7 90 0.0019 26.7 5.9 42 112-153 10-59 (133)
246 COG0337 AroB 3-dehydroquinate 39.4 99 0.0021 31.2 7.0 144 271-415 35-206 (360)
247 PRK13054 lipid kinase; Reviewe 39.3 95 0.0021 30.2 7.0 59 282-344 17-75 (300)
248 COG4029 Uncharacterized protei 39.3 90 0.0019 26.2 5.5 46 3-54 16-62 (142)
249 PRK08862 short chain dehydroge 39.1 1.3E+02 0.0028 27.8 7.5 84 238-334 7-93 (227)
250 PRK15482 transcriptional regul 39.0 1.8E+02 0.004 27.9 8.9 50 302-356 187-236 (285)
251 PRK11337 DNA-binding transcrip 38.9 2.7E+02 0.0058 26.8 10.0 52 301-357 191-242 (292)
252 TIGR00147 lipid kinase, YegS/R 38.7 64 0.0014 31.2 5.6 76 277-356 13-92 (293)
253 PLN02918 pyridoxine (pyridoxam 37.8 4E+02 0.0086 28.6 11.5 61 243-303 108-169 (544)
254 PF03681 UPF0150: Uncharacteri 37.7 30 0.00065 23.6 2.3 21 239-259 24-44 (48)
255 PRK05954 precorrin-8X methylmu 37.6 3.2E+02 0.0069 25.2 9.5 86 289-382 82-179 (203)
256 PRK14569 D-alanyl-alanine synt 37.5 50 0.0011 32.1 4.6 102 269-379 3-114 (296)
257 PRK13337 putative lipid kinase 37.3 90 0.0019 30.4 6.4 71 282-356 18-92 (304)
258 PRK05867 short chain dehydroge 36.9 1.6E+02 0.0034 27.3 7.9 53 281-334 42-96 (253)
259 PRK05382 chorismate synthase; 36.7 1.2E+02 0.0025 30.6 7.0 63 311-390 182-247 (359)
260 PF01729 QRPTase_C: Quinolinat 36.7 2.6E+02 0.0057 24.8 8.7 74 239-332 83-156 (169)
261 COG0541 Ffh Signal recognition 36.6 5.1E+02 0.011 26.9 13.8 52 357-411 251-309 (451)
262 cd07943 DRE_TIM_HOA 4-hydroxy- 36.5 1.1E+02 0.0025 29.1 6.9 51 278-328 107-158 (263)
263 TIGR01481 ccpA catabolite cont 36.5 2.4E+02 0.0053 27.1 9.4 83 247-331 30-122 (329)
264 TIGR02417 fruct_sucro_rep D-fr 36.4 4E+02 0.0086 25.6 14.2 84 247-332 31-124 (327)
265 PRK10703 DNA-binding transcrip 36.2 2.2E+02 0.0048 27.6 9.2 61 270-332 60-123 (341)
266 PRK05953 precorrin-8X methylmu 36.0 2.5E+02 0.0053 26.1 8.5 41 337-382 134-177 (208)
267 cd05008 SIS_GlmS_GlmD_1 SIS (S 36.0 2E+02 0.0043 23.4 7.6 51 300-355 49-99 (126)
268 PF04174 CP_ATPgrasp_1: A circ 35.9 41 0.0009 33.5 3.7 26 128-153 69-94 (330)
269 PRK14680 hypothetical protein; 35.9 1.3E+02 0.0028 25.8 6.3 42 112-153 11-60 (134)
270 PF02570 CbiC: Precorrin-8X me 35.7 81 0.0017 29.0 5.3 41 337-382 134-177 (198)
271 COG0695 GrxC Glutaredoxin and 35.6 1.6E+02 0.0036 22.4 6.4 40 278-318 7-46 (80)
272 PF01866 Diphthamide_syn: Puta 35.2 1.5E+02 0.0033 29.0 7.7 102 236-352 182-286 (307)
273 PRK09526 lacI lac repressor; R 34.9 3.9E+02 0.0085 25.8 10.7 84 247-331 34-127 (342)
274 PRK04247 hypothetical protein; 34.9 4E+02 0.0086 25.3 9.9 23 130-152 160-183 (238)
275 PRK08195 4-hyroxy-2-oxovalerat 34.9 1.3E+02 0.0029 30.0 7.2 49 279-327 111-160 (337)
276 PF02601 Exonuc_VII_L: Exonucl 34.8 4.4E+02 0.0096 25.7 15.6 64 269-334 14-85 (319)
277 PRK14688 hypothetical protein; 34.2 1.4E+02 0.0029 25.2 6.1 64 111-174 10-81 (121)
278 PF01055 Glyco_hydro_31: Glyco 33.9 3.9E+02 0.0084 27.4 10.8 88 240-330 2-102 (441)
279 TIGR03217 4OH_2_O_val_ald 4-hy 33.8 1.5E+02 0.0033 29.6 7.4 51 278-328 109-160 (333)
280 PRK08674 bifunctional phosphog 33.7 4.3E+02 0.0093 26.1 10.7 54 300-356 81-134 (337)
281 PF03698 UPF0180: Uncharacteri 33.6 1E+02 0.0022 23.9 4.8 54 285-353 10-63 (80)
282 PF02006 DUF137: Protein of un 33.6 1.3E+02 0.0028 26.9 6.0 70 285-356 20-98 (178)
283 PF06506 PrpR_N: Propionate ca 33.5 2.2E+02 0.0047 25.2 7.8 57 269-332 77-133 (176)
284 COG0300 DltE Short-chain dehyd 33.3 2.1E+02 0.0046 27.5 8.0 58 270-333 6-64 (265)
285 KOG1752 Glutaredoxin and relat 33.3 1.9E+02 0.0041 23.6 6.6 43 276-318 18-60 (104)
286 cd00738 HGTP_anticodon HGTP an 33.2 1.9E+02 0.0041 22.0 6.6 56 272-332 4-62 (94)
287 PRK03659 glutathione-regulated 33.1 5.7E+02 0.012 27.7 12.3 134 270-419 401-556 (601)
288 TIGR00252 conserved hypothetic 32.9 1.6E+02 0.0034 24.7 6.3 42 112-153 11-60 (119)
289 cd02911 arch_FMN Archeal FMN-b 32.8 1.7E+02 0.0037 27.5 7.2 89 239-332 77-173 (233)
290 cd03418 GRX_GRXb_1_3_like Glut 32.8 1.9E+02 0.0042 21.0 6.9 37 279-317 7-43 (75)
291 PRK00861 putative lipid kinase 32.7 1.2E+02 0.0026 29.4 6.5 71 282-357 19-91 (300)
292 cd03174 DRE_TIM_metallolyase D 32.7 2.6E+02 0.0057 26.2 8.7 48 281-328 113-163 (265)
293 cd01539 PBP1_GGBP Periplasmic 32.5 1.2E+02 0.0026 29.2 6.4 22 305-326 38-59 (303)
294 cd07944 DRE_TIM_HOA_like 4-hyd 32.4 1.8E+02 0.0038 27.9 7.4 35 362-396 195-230 (266)
295 PRK10886 DnaA initiator-associ 32.4 3.9E+02 0.0085 24.4 9.9 65 290-356 101-166 (196)
296 COG4126 Hydantoin racemase [Am 32.3 45 0.00097 31.1 3.0 78 270-351 110-201 (230)
297 PRK14682 hypothetical protein; 32.0 1.6E+02 0.0035 24.5 6.2 42 112-153 9-59 (117)
298 cd06305 PBP1_methylthioribose_ 31.8 1.3E+02 0.0027 28.0 6.4 14 317-330 73-86 (273)
299 PRK13055 putative lipid kinase 31.8 1.1E+02 0.0024 30.4 6.1 78 277-357 14-95 (334)
300 COG1748 LYS9 Saccharopine dehy 31.4 1.2E+02 0.0027 30.9 6.3 99 274-386 5-103 (389)
301 COG1908 FrhD Coenzyme F420-red 31.3 2.1E+02 0.0045 24.2 6.4 72 233-307 29-105 (132)
302 TIGR00676 fadh2 5,10-methylene 30.7 3.4E+02 0.0073 26.1 9.1 52 282-333 43-95 (272)
303 PRK12360 4-hydroxy-3-methylbut 30.7 1E+02 0.0022 30.0 5.4 89 245-342 43-134 (281)
304 PLN03050 pyridoxine (pyridoxam 30.6 4.7E+02 0.01 24.8 11.7 56 270-326 61-116 (246)
305 PRK09492 treR trehalose repres 30.4 4.1E+02 0.0089 25.3 9.9 83 247-331 33-125 (315)
306 PF10096 DUF2334: Uncharacteri 30.0 1.5E+02 0.0032 28.1 6.3 51 279-329 12-73 (243)
307 COG2515 Acd 1-aminocyclopropan 30.0 5.5E+02 0.012 25.3 11.0 63 318-382 139-214 (323)
308 PRK12497 hypothetical protein; 29.9 2E+02 0.0043 23.9 6.4 42 112-153 11-60 (119)
309 COG1737 RpiR Transcriptional r 29.7 2.6E+02 0.0057 26.9 8.2 40 291-330 171-210 (281)
310 PF01264 Chorismate_synt: Chor 29.6 97 0.0021 31.0 5.1 63 311-390 182-247 (346)
311 TIGR00322 diphth2_R diphthamid 29.4 3.5E+02 0.0075 27.0 9.1 83 237-332 206-291 (332)
312 TIGR02181 GRX_bact Glutaredoxi 29.4 90 0.0019 23.3 4.0 37 279-317 6-42 (79)
313 PF01297 TroA: Periplasmic sol 29.2 1.1E+02 0.0025 28.7 5.5 65 291-355 163-230 (256)
314 PRK14684 hypothetical protein; 28.9 2.5E+02 0.0054 23.5 6.8 42 112-153 11-60 (120)
315 cd07948 DRE_TIM_HCS Saccharomy 28.8 2.2E+02 0.0048 27.3 7.4 78 242-322 103-181 (262)
316 COG4221 Short-chain alcohol de 28.7 1.5E+02 0.0032 28.2 5.9 83 235-335 7-92 (246)
317 PRK10310 PTS system galactitol 28.7 2.9E+02 0.0064 21.8 7.3 32 271-302 4-37 (94)
318 PLN02754 chorismate synthase 28.7 1.7E+02 0.0037 30.0 6.7 62 312-390 218-282 (413)
319 COG0532 InfB Translation initi 28.6 4.4E+02 0.0095 27.9 9.9 111 237-370 55-165 (509)
320 PTZ00286 6-phospho-1-fructokin 28.6 1.2E+02 0.0025 31.8 5.7 109 276-395 156-269 (459)
321 PRK10658 putative alpha-glucos 28.3 4.6E+02 0.0099 28.9 10.5 94 233-330 233-344 (665)
322 cd03129 GAT1_Peptidase_E_like 28.2 3.2E+02 0.007 24.8 8.2 71 268-343 28-99 (210)
323 PF01488 Shikimate_DH: Shikima 28.2 2.8E+02 0.006 23.3 7.3 75 268-356 11-85 (135)
324 PRK10892 D-arabinose 5-phospha 28.2 3E+02 0.0064 27.0 8.5 37 303-339 100-136 (326)
325 cd03029 GRX_hybridPRX5 Glutare 28.2 1.3E+02 0.0028 21.9 4.6 28 278-305 7-34 (72)
326 PRK11543 gutQ D-arabinose 5-ph 28.2 2.7E+02 0.0059 27.1 8.2 27 304-330 96-122 (321)
327 PRK09432 metF 5,10-methylenete 28.1 5.7E+02 0.012 24.9 10.5 53 281-333 66-119 (296)
328 PRK13656 trans-2-enoyl-CoA red 27.9 3.7E+02 0.0081 27.5 9.0 58 240-298 11-68 (398)
329 PF02021 UPF0102: Uncharacteri 27.9 2.5E+02 0.0054 22.2 6.4 40 114-153 3-50 (93)
330 PRK06139 short chain dehydroge 27.8 2.1E+02 0.0046 28.2 7.4 84 238-334 9-94 (330)
331 COG1619 LdcA Uncharacterized p 27.8 2.5E+02 0.0054 27.8 7.6 84 269-352 10-108 (313)
332 KOG1208 Dehydrogenases with di 27.6 1.8E+02 0.0039 28.8 6.6 82 238-335 37-125 (314)
333 PRK11175 universal stress prot 27.4 2E+02 0.0043 27.6 7.0 67 286-355 72-146 (305)
334 PRK08085 gluconate 5-dehydroge 27.3 3.1E+02 0.0068 25.2 8.2 52 282-334 43-96 (254)
335 PF02954 HTH_8: Bacterial regu 27.2 41 0.00089 22.3 1.5 21 391-411 22-42 (42)
336 cd04740 DHOD_1B_like Dihydroor 26.9 3.6E+02 0.0078 26.0 8.7 47 281-330 138-185 (296)
337 cd01917 ACS_2 Acetyl-CoA synth 26.9 2.9E+02 0.0062 26.8 7.5 30 386-415 192-221 (287)
338 PF13407 Peripla_BP_4: Peripla 26.8 2.1E+02 0.0046 26.3 6.9 50 278-330 37-86 (257)
339 COG1597 LCB5 Sphingosine kinas 26.8 1.9E+02 0.0041 28.3 6.7 78 276-357 13-93 (301)
340 PRK07523 gluconate 5-dehydroge 26.7 3.2E+02 0.0069 25.2 8.1 84 238-334 12-97 (255)
341 PRK13936 phosphoheptose isomer 26.6 4.8E+02 0.01 23.6 9.0 50 305-356 119-168 (197)
342 cd03786 GT1_UDP-GlcNAc_2-Epime 26.5 2.2E+02 0.0048 27.9 7.3 81 274-354 33-119 (363)
343 cd05710 SIS_1 A subgroup of th 26.5 3.5E+02 0.0076 22.1 7.4 32 301-332 51-82 (120)
344 cd04865 LigD_Pol_like_2 LigD_P 26.5 1.3E+02 0.0029 28.3 5.1 72 8-83 123-206 (228)
345 cd06300 PBP1_ABC_sugar_binding 26.4 2.3E+02 0.005 26.3 7.1 51 278-331 42-92 (272)
346 cd00862 ProRS_anticodon_zinc P 26.2 2.7E+02 0.0059 25.4 7.3 60 270-333 11-76 (202)
347 cd04795 SIS SIS domain. SIS (S 26.0 2.8E+02 0.006 20.6 6.8 36 295-330 45-80 (87)
348 PRK11253 ldcA L,D-carboxypepti 25.9 2.9E+02 0.0063 27.1 7.8 97 271-375 3-120 (305)
349 TIGR02189 GlrX-like_plant Glut 25.8 3.4E+02 0.0074 21.5 7.1 28 278-305 14-41 (99)
350 KOG0725 Reductases with broad 25.7 2.7E+02 0.0059 26.7 7.5 84 239-335 11-100 (270)
351 PRK13059 putative lipid kinase 25.7 1.5E+02 0.0033 28.7 5.8 76 277-357 13-92 (295)
352 cd01391 Periplasmic_Binding_Pr 25.5 1.5E+02 0.0033 26.6 5.6 16 283-298 45-60 (269)
353 PLN02530 histidine-tRNA ligase 25.4 3E+02 0.0066 28.9 8.3 58 270-332 402-459 (487)
354 COG0205 PfkA 6-phosphofructoki 25.4 49 0.0011 33.2 2.3 28 364-395 153-181 (347)
355 cd06310 PBP1_ABC_sugar_binding 25.4 1.6E+02 0.0034 27.4 5.7 16 315-330 73-88 (273)
356 cd06320 PBP1_allose_binding Pe 25.2 1.6E+02 0.0035 27.4 5.8 48 280-330 41-88 (275)
357 PRK12463 chorismate synthase; 25.1 2.2E+02 0.0049 29.0 6.8 64 311-391 200-268 (390)
358 TIGR00677 fadh2_euk methylenet 25.1 4.1E+02 0.0089 25.7 8.6 55 280-334 42-97 (281)
359 PF00682 HMGL-like: HMGL-like 25.0 4.5E+02 0.0098 24.2 8.8 47 282-328 107-154 (237)
360 PF06490 FleQ: Flagellar regul 25.0 1.7E+02 0.0037 23.8 5.1 24 279-302 6-29 (109)
361 PF00106 adh_short: short chai 25.0 4.2E+02 0.0091 22.3 11.0 88 238-335 2-91 (167)
362 PRK09019 translation initiatio 25.0 3.6E+02 0.0078 22.2 6.8 55 271-330 46-106 (108)
363 PRK10076 pyruvate formate lyas 24.8 5.3E+02 0.012 23.8 9.0 80 243-329 110-211 (213)
364 PLN02958 diacylglycerol kinase 24.8 5.7E+02 0.012 26.9 10.2 99 239-344 84-187 (481)
365 cd06321 PBP1_ABC_sugar_binding 24.7 2E+02 0.0044 26.7 6.4 17 314-330 72-88 (271)
366 TIGR02069 cyanophycinase cyano 24.6 4.5E+02 0.0098 24.9 8.7 31 268-298 27-58 (250)
367 PRK06830 diphosphate--fructose 24.6 1.4E+02 0.003 31.1 5.4 62 277-339 153-216 (443)
368 PF12745 HGTP_anticodon2: Anti 24.6 2.5E+02 0.0055 27.1 6.9 61 268-332 4-65 (273)
369 PRK10014 DNA-binding transcrip 24.5 6.4E+02 0.014 24.3 10.2 61 270-332 65-128 (342)
370 PRK14689 hypothetical protein; 24.4 4.3E+02 0.0094 22.3 9.1 74 57-135 29-102 (124)
371 cd01080 NAD_bind_m-THF_DH_Cycl 24.4 4.7E+02 0.01 23.1 8.2 55 268-335 43-98 (168)
372 PRK07478 short chain dehydroge 24.3 2.9E+02 0.0064 25.4 7.4 84 238-334 8-93 (254)
373 PTZ00445 p36-lilke protein; Pr 24.3 1.2E+02 0.0026 28.2 4.4 52 278-330 24-97 (219)
374 PRK07097 gluconate 5-dehydroge 24.2 3.6E+02 0.0078 25.1 8.0 84 238-334 12-97 (265)
375 COG2875 CobM Precorrin-4 methy 24.2 6.2E+02 0.013 24.0 10.2 78 217-302 26-109 (254)
376 cd04862 PaeLigD_Pol_like PaeLi 23.9 1.5E+02 0.0033 27.8 5.1 72 8-83 122-205 (227)
377 TIGR02778 ligD_pol DNA polymer 23.8 1.5E+02 0.0032 28.2 5.0 72 8-83 138-221 (245)
378 cd00764 Eukaryotic_PFK Phospho 23.8 2.1E+02 0.0046 32.0 6.9 141 242-397 362-545 (762)
379 PRK14987 gluconate operon tran 23.8 6.1E+02 0.013 24.4 9.8 83 247-331 34-126 (331)
380 PF04122 CW_binding_2: Putativ 23.8 3.5E+02 0.0075 20.9 9.7 82 242-339 4-86 (92)
381 PRK10565 putative carbohydrate 23.7 8.9E+02 0.019 25.6 11.6 36 270-305 61-96 (508)
382 PRK10727 DNA-binding transcrip 23.6 6.5E+02 0.014 24.4 10.0 84 247-332 30-123 (343)
383 cd07062 Peptidase_S66_mccF_lik 23.6 3E+02 0.0064 27.0 7.4 82 271-352 2-100 (308)
384 cd06318 PBP1_ABC_sugar_binding 23.5 2.4E+02 0.0052 26.3 6.6 19 309-327 40-58 (282)
385 PRK13951 bifunctional shikimat 23.5 1.7E+02 0.0038 30.8 6.0 52 305-356 215-272 (488)
386 PF04392 ABC_sub_bind: ABC tra 23.4 5.1E+02 0.011 24.8 9.0 115 269-402 131-254 (294)
387 PRK11303 DNA-binding transcrip 23.4 6.6E+02 0.014 24.0 10.0 83 247-331 32-124 (328)
388 cd05009 SIS_GlmS_GlmD_2 SIS (S 23.3 3.3E+02 0.0071 22.8 6.9 22 237-258 16-37 (153)
389 PRK05876 short chain dehydroge 23.3 3.4E+02 0.0073 25.7 7.7 55 279-334 37-93 (275)
390 PF13793 Pribosyltran_N: N-ter 23.2 4.3E+02 0.0093 21.8 7.4 38 114-153 10-47 (116)
391 PRK06830 diphosphate--fructose 23.2 62 0.0013 33.6 2.6 60 292-356 144-210 (443)
392 PRK00061 ribH 6,7-dimethyl-8-r 23.2 1E+02 0.0022 27.1 3.6 61 268-331 11-78 (154)
393 PF03544 TonB_C: Gram-negative 23.1 1.4E+02 0.0031 22.0 4.1 27 123-149 11-37 (79)
394 cd01019 ZnuA Zinc binding prot 22.9 1.8E+02 0.0039 28.1 5.7 63 291-353 192-257 (286)
395 PRK08339 short chain dehydroge 22.9 3.3E+02 0.0071 25.5 7.5 54 280-334 40-95 (263)
396 cd04863 MtLigD_Pol_like MtLigD 22.9 1.8E+02 0.0039 27.4 5.3 73 8-84 126-210 (231)
397 COG1598 Predicted nuclease of 22.9 63 0.0014 24.4 1.9 21 239-259 26-46 (73)
398 cd04861 LigD_Pol_like LigD_Pol 22.8 1.7E+02 0.0037 27.5 5.1 72 8-83 122-205 (227)
399 cd07948 DRE_TIM_HCS Saccharomy 22.8 2.5E+02 0.0054 26.9 6.5 112 282-396 111-231 (262)
400 PLN02780 ketoreductase/ oxidor 22.8 3.1E+02 0.0067 26.9 7.4 86 238-335 55-143 (320)
401 KOG1014 17 beta-hydroxysteroid 22.8 1.8E+02 0.0039 28.7 5.4 69 271-342 75-144 (312)
402 PRK03298 hypothetical protein; 22.7 6.4E+02 0.014 23.6 8.9 119 20-150 27-156 (224)
403 PRK07109 short chain dehydroge 22.7 3.6E+02 0.0079 26.5 8.0 84 238-334 10-95 (334)
404 PRK15138 aldehyde reductase; P 22.7 1.9E+02 0.0041 29.4 6.0 64 271-336 31-97 (387)
405 PRK01966 ddl D-alanyl-alanine 22.5 1.2E+02 0.0027 29.9 4.5 34 269-302 3-41 (333)
406 PRK14685 hypothetical protein; 22.5 2.9E+02 0.0062 24.9 6.3 43 111-153 46-96 (177)
407 PF05036 SPOR: Sporulation rel 22.5 3E+02 0.0066 19.8 6.2 26 274-299 46-72 (76)
408 smart00115 CASc Caspase, inter 22.4 4.7E+02 0.01 24.5 8.3 35 284-321 31-65 (241)
409 PF01326 PPDK_N: Pyruvate phos 22.4 1.7E+02 0.0037 28.8 5.5 44 105-151 260-303 (327)
410 PRK07063 short chain dehydroge 22.4 4.2E+02 0.0091 24.5 8.1 84 238-334 9-96 (260)
411 COG0054 RibH Riboflavin syntha 22.2 75 0.0016 27.8 2.5 59 269-330 12-77 (152)
412 PF06319 DUF1052: Protein of u 22.1 2.6E+02 0.0057 24.6 5.8 42 108-149 19-69 (157)
413 cd07939 DRE_TIM_NifV Streptomy 21.9 3.1E+02 0.0067 26.0 7.0 76 243-322 102-179 (259)
414 cd01886 EF-G Elongation factor 21.8 7.1E+02 0.015 23.8 10.5 28 402-429 190-217 (270)
415 KOG1205 Predicted dehydrogenas 21.7 2E+02 0.0043 28.0 5.6 14 323-336 90-103 (282)
416 PTZ00286 6-phospho-1-fructokin 21.6 2.8E+02 0.006 29.1 6.9 54 237-299 153-206 (459)
417 cd02940 DHPD_FMN Dihydropyrimi 21.5 6.4E+02 0.014 24.4 9.3 26 281-306 111-137 (299)
418 PF00763 THF_DHG_CYH: Tetrahyd 21.5 4.6E+02 0.01 21.6 7.3 53 270-322 31-84 (117)
419 PF02548 Pantoate_transf: Keto 21.4 2.1E+02 0.0046 27.5 5.6 99 244-355 91-205 (261)
420 TIGR02405 trehalos_R_Ecol treh 21.2 7E+02 0.015 23.7 9.6 83 247-331 30-122 (311)
421 PRK13990 cell division topolog 21.2 4E+02 0.0087 21.2 6.2 45 105-149 40-87 (90)
422 COG0413 PanB Ketopantoate hydr 21.1 5.2E+02 0.011 24.8 8.0 101 242-355 88-204 (268)
423 PRK13057 putative lipid kinase 21.1 3.2E+02 0.007 26.2 7.1 70 283-357 13-84 (287)
424 PF07881 Fucose_iso_N1: L-fuco 21.0 6E+02 0.013 22.7 9.5 96 284-381 30-135 (171)
425 cd07938 DRE_TIM_HMGL 3-hydroxy 21.0 4.5E+02 0.0098 25.3 8.0 41 281-321 147-188 (274)
426 CHL00201 syh histidine-tRNA sy 21.0 5.2E+02 0.011 26.6 8.9 83 239-332 301-383 (430)
427 TIGR00160 MGSA methylglyoxal s 20.9 4.7E+02 0.01 22.7 7.0 98 271-380 4-109 (143)
428 PF01522 Polysacc_deac_1: Poly 20.9 2.1E+02 0.0046 23.0 5.0 52 270-324 6-57 (123)
429 COG1181 DdlA D-alanine-D-alani 20.9 13 0.00028 36.8 -2.8 26 7-33 77-102 (317)
430 cd07025 Peptidase_S66 LD-Carbo 20.9 2.6E+02 0.0057 26.9 6.4 70 283-352 14-96 (282)
431 TIGR02699 archaeo_AfpA archaeo 20.8 2.6E+02 0.0057 25.0 5.8 51 334-385 66-125 (174)
432 PRK11302 DNA-binding transcrip 20.6 4.9E+02 0.011 24.7 8.2 32 300-331 178-209 (284)
433 cd05006 SIS_GmhA Phosphoheptos 20.6 5.8E+02 0.013 22.3 9.1 30 302-331 106-135 (177)
434 PRK00414 gmhA phosphoheptose i 20.6 5.9E+02 0.013 22.9 8.3 47 304-355 118-164 (192)
435 TIGR00272 DPH2 diphthamide bio 20.6 6.3E+02 0.014 26.8 9.4 77 268-353 280-359 (496)
436 PRK10819 transport protein Ton 20.6 3.1E+02 0.0066 26.1 6.5 31 120-150 173-203 (246)
437 cd01537 PBP1_Repressors_Sugar_ 20.4 6.3E+02 0.014 22.6 11.5 45 286-332 19-63 (264)
438 TIGR02180 GRX_euk Glutaredoxin 20.3 2.3E+02 0.0049 21.0 4.7 40 279-318 6-47 (84)
439 PRK14681 hypothetical protein; 20.3 3.2E+02 0.007 24.1 6.1 42 112-153 48-98 (158)
440 cd07940 DRE_TIM_IPMS 2-isoprop 20.3 3.9E+02 0.0083 25.5 7.3 75 243-322 106-183 (268)
441 TIGR00715 precor6x_red precorr 20.2 90 0.002 29.9 2.9 32 274-308 4-35 (256)
442 PRK07062 short chain dehydroge 20.2 4E+02 0.0087 24.7 7.4 27 308-334 69-97 (265)
443 cd02978 KaiB_like KaiB-like fa 20.1 2.9E+02 0.0063 21.0 5.0 41 274-314 7-49 (72)
444 TIGR03682 arCOG04112 arCOG0411 20.1 5.9E+02 0.013 25.0 8.7 82 237-332 186-270 (308)
445 KOG4626 O-linked N-acetylgluco 20.1 2.3E+02 0.005 30.8 5.9 120 279-418 770-900 (966)
446 smart00642 Aamy Alpha-amylase 20.1 2.7E+02 0.0059 24.5 5.8 23 306-328 65-87 (166)
447 COG2308 Uncharacterized conser 20.0 1.5E+02 0.0032 30.8 4.3 61 3-65 352-414 (488)
448 PRK13394 3-hydroxybutyrate deh 20.0 5.1E+02 0.011 23.8 8.1 52 282-334 41-94 (262)
No 1
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=6.3e-84 Score=678.60 Aligned_cols=435 Identities=76% Similarity=1.192 Sum_probs=393.1
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCce
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~ 81 (437)
.+.+.+++.++++++|||+||||..+|++|+|+++++|++|+.++++.+..+++.++||+||++.+|+++.++++.+|++
T Consensus 141 ~v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~~~EisV~v~r~~~G~i 220 (577)
T PLN02948 141 EIDDLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPFVKELAVMVARSRDGST 220 (577)
T ss_pred EeCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCCCeEEEEEEEECCCCCE
Confidence 35688999999999999999999888778999999999999999999876655569999999988999999999888998
Q ss_pred EEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeee
Q 013729 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (437)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~~ 161 (437)
..+|..|+.+.++.+...+.|+.++++.++++++++.+++++|+++|++++|||++++|++||+|||||+|++||++.++
T Consensus 221 ~~~p~~E~~~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInpRpg~sGh~t~ea 300 (577)
T PLN02948 221 RCYPVVETIHKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAPRPHNSGHYTIEA 300 (577)
T ss_pred EEecCcccEEECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeCCCCCCCceeeec
Confidence 88998888877777777778999999999999999999999999999999999999899999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCceeEEEEE
Q 013729 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241 (437)
Q Consensus 162 ~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~G~Vi~ 241 (437)
+++|+|++|+|+++|+|++........++|.++++...+...+.+...+++.....|+|+++||++++.++++++|||++
T Consensus 301 ~~~s~fe~~vRa~lGlpl~~~~~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~~~~~p~~~v~~ygk~~~r~~rkmGhV~~ 380 (577)
T PLN02948 301 CYTSQFEQHLRAVLGLPLGDTSMKVPAAIMYNILGEDEGEAGFRLAHQLMGRALNIPGASVHWYGKPEMRKQRKMGHITV 380 (577)
T ss_pred ccCCHHHHHHHHHcCCCCCCccccCCcEEEEEEeccccccccccchhhHHHHHhhCCCCEEEEecCCCCCCCCeeEEEEE
Confidence 99999999999999999998766555578899988643221121100144455677999999999988888999999999
Q ss_pred EcCCHHHHHHHHHHhhccCCcc--cccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhh
Q 013729 242 VGSSMGLVESRLNSLLKEDSSD--CQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASS 319 (437)
Q Consensus 242 ~G~s~~eA~~k~~~a~~~i~~~--~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~ 319 (437)
+|+|.+++..+++.+++.+... +++...++|+|+|||+||+++++++.+.|++||++++++|+|+||+|+++.+|+++
T Consensus 381 ~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~ 460 (577)
T PLN02948 381 VGPSAAEVEARLDQLLAEESADPDALPKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARS 460 (577)
T ss_pred ecCCHHHHHHHHHHHHhhhccCCCCCCCCCCeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHH
Confidence 9999999999999998865443 33334578999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCeEEEEeccccccccCcccCCCCCCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcc
Q 013729 320 AHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGF 399 (437)
Q Consensus 320 ~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~ 399 (437)
++++|++|+|++||+++||||+++++|++||||||++.+.++|+|+||||+|||+|+||+||+|||+.|||++|+|||++
T Consensus 461 ~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~~ 540 (577)
T PLN02948 461 AHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGA 540 (577)
T ss_pred HHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHhHhhhhhhhc
Q 013729 400 GDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYLN 436 (437)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (437)
+|++||+||++||+++.+++.+++++|++.+|++|++
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (577)
T PLN02948 541 SDPDLLDKMEAYQEDMRDMVLEKAEKLEELGWEEYLN 577 (577)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcC
Confidence 9999999999999999999999999999889999864
No 2
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.6e-51 Score=342.94 Aligned_cols=158 Identities=63% Similarity=0.989 Sum_probs=154.8
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCE
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPV 350 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pV 350 (437)
+|+|||||+||++.++++++.|++||++|+++|+||||||+++.+|.++++++|++|+|++||+++|||||++++|.+||
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPV 83 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPV 83 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 013729 351 IGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 428 (437)
Q Consensus 351 i~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (437)
||||+++..++|+|+|+|++|||+||||+||+||++.|||++|+|||++.||.|++||++||++++++|+++++++++
T Consensus 84 iGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a~NAallAa~ILa~~d~~l~~kl~~~r~~~~~~V~~~~~~l~~ 161 (162)
T COG0041 84 IGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAANAALLAAQILAIKDPELAEKLAEFREAQTEEVLEDDEELEE 161 (162)
T ss_pred EeccCccccccchHHHHHHhcCCCCCeeEEEeecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCchhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887753
No 3
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=100.00 E-value=6.6e-48 Score=332.29 Aligned_cols=155 Identities=68% Similarity=1.053 Sum_probs=151.0
Q ss_pred EEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEE
Q 013729 272 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVI 351 (437)
Q Consensus 272 V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi 351 (437)
|+|+|||+||+++++++.+.|++||++||++|+|+||+|+++.+|+++++++|++|+|++||+++||||+++++|++|||
T Consensus 1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVI 80 (156)
T TIGR01162 1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVI 80 (156)
T ss_pred CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHHH
Q 013729 352 GVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKL 426 (437)
Q Consensus 352 ~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (437)
|||++.+.++|+|+|||++|||+|+||+||+|||++|||++|+|||+++|++||+||++||+++++++++++++|
T Consensus 81 gvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl~~~d~~l~~kl~~~r~~~~~~v~~~~~~l 155 (156)
T TIGR01162 81 GVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDPELAEKLKEYRENQKEEVLKKNKKL 155 (156)
T ss_pred EecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999987789999999999999999999999999999999999999999999999999999999999999888776
No 4
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=100.00 E-value=3.9e-44 Score=309.18 Aligned_cols=150 Identities=56% Similarity=0.894 Sum_probs=133.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLP 349 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~p 349 (437)
++|+|+|||+||+++++++.+.|+++|++|+++|+|+||+|+++.+|+++++++|++|+|++||+++|||++++++|.+|
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~P 80 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTLP 80 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS-
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHH
Q 013729 350 VIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDV 419 (437)
Q Consensus 350 Vi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 419 (437)
|||||++++.++|+|+|+|++|||+|+||+||+|||++|||++|+|||+++|++||+||++||++++++|
T Consensus 81 VIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~~~~~v 150 (150)
T PF00731_consen 81 VIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELREKLRAYREKMKEKV 150 (150)
T ss_dssp EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC
Confidence 9999999888999999999999999999999999999999999999999999999999999999999875
No 5
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=4.1e-41 Score=376.15 Aligned_cols=355 Identities=17% Similarity=0.182 Sum_probs=285.7
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~d~~G 79 (437)
.+++.+|+.++++++|||+||||++++ ||+||.+|+|.+||.++++.+.. ..+.++||+||++++|+++++++|.+|
T Consensus 722 ~v~s~eea~~~a~~iGyPvvVKP~~g~-gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~g~Ei~V~vl~D~~G 800 (1102)
T PLN02735 722 IARSEADALAIAKRIGYPVVVRPSYVL-GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSDATEIDVDALADSEG 800 (1102)
T ss_pred EeCCHHHHHHHHHhcCCCeEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCCcEEEEEEEEECCCC
Confidence 357889999999999999999998866 89999999999999999988642 223599999998779999999999889
Q ss_pred ceEEeeeeeeEEec----CceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 80 SILCYPVVETIHKE----NICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 80 ~~~~~~~~e~~~~~----g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
+++++++.+++... |+... ..|+ .++++..+++++++.+++++|+++|++++||+++++|++||+|||||++++
T Consensus 801 ~vv~~~i~e~~~~~gvhsGds~~-~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~dg~~yviEiNpR~s~t 879 (1102)
T PLN02735 801 NVVIGGIMEHIEQAGVHSGDSAC-SLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPRASRT 879 (1102)
T ss_pred CEEEecceEeeeccCccCCCccE-EecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcCCCcEEEEEEeCCCCcc
Confidence 98888888887644 33333 3454 699999999999999999999999999999999878899999999999987
Q ss_pred CCceeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCc
Q 013729 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQR 234 (437)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~ 234 (437)
..++.+++|+++.+.+++.++|.+|.+....... .. ...+.+-| .|+ +.++++++..+ +++ ++
T Consensus 880 ~p~~~katGidl~~~~~~~~~G~~l~~~~~~~~~-~~-~~~~vk~~--vf~--------~~~~~~~d~~l--g~e---mk 942 (1102)
T PLN02735 880 VPFVSKAIGHPLAKYASLVMSGKSLKDLGFTEEV-IP-AHVSVKEA--VLP--------FDKFQGCDVLL--GPE---MR 942 (1102)
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCChhhcCCCccc-cc-CeEEEEec--cCC--------hhhCCCCCCCc--ceE---EE
Confidence 7778889999999999999999998765321100 00 01111111 122 34577777766 356 56
Q ss_pred eeEEEEEEcCCHHHHHHHHHHhhcc-CCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHH
Q 013729 235 KMGHITIVGSSMGLVESRLNSLLKE-DSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLM 313 (437)
Q Consensus 235 ~~G~Vi~~G~s~~eA~~k~~~a~~~-i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~ 313 (437)
++|++|++|.|++||+.|+..+.+. ++ +.+.+ +++.++.|++.+.+.++.|.++||++.+| .+ |
T Consensus 943 StGe~~g~~~~~~~a~~ka~~~~~~~~p------~~g~v-liSv~d~~K~~~~~~a~~L~~lG~~i~aT----~G----T 1007 (1102)
T PLN02735 943 STGEVMGIDYEFSKAFAKAQIAAGQRLP------LSGTV-FISLNDLTKPHLVPIARGFLELGFRIVST----SG----T 1007 (1102)
T ss_pred eCCceeeecCCHHHHHHHHHhcCCCccC------CCCeE-EEEEecCCchhHHHHHHHHHHCCCEEEEc----cH----H
Confidence 8999999999999999999887753 32 45666 89999999999999999999999999999 67 7
Q ss_pred HHhHhhhhhcCCeEEEEec--cccccccCcccCCCCCCEEeccCCCC--CCCChhhHHHhhhCCCCCceEEEEeCCcchH
Q 013729 314 FSYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVRAS--ALDGLDSLLSIVQMPRGVPVATVAINNATNA 389 (437)
Q Consensus 314 ~~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVi~~p~~~~--~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~a 389 (437)
.+|+ ++.|++|..+.+ .+.+++.++|..+....|||+|.... ..||+. +|+.++..||||.|-- +++.|
T Consensus 1008 a~~L---~~~Gi~~~~v~~~~~~~~~~~~~i~~~~i~~vin~~~~~~~~~~d~~~--iRr~a~~~~ip~~t~~--~~a~~ 1080 (1102)
T PLN02735 1008 AHFL---ELAGIPVERVLKLHEGRPHAGDMLANGQIQLMVITSSGDALDQKDGRQ--LRRMALAYKVPIITTV--AGALA 1080 (1102)
T ss_pred HHHH---HHCCCceEEEeeccCCCccHHHHHHcCCeEEEEECCCCccccccccHH--HHHHHHHcCCCEEecH--HHHHH
Confidence 8898 567999876644 45679999999999999999997432 457877 9999999999999532 35566
Q ss_pred HHHHHHHH
Q 013729 390 GLLAVRML 397 (437)
Q Consensus 390 a~~a~~~l 397 (437)
.+.|++.+
T Consensus 1081 ~~~~~~~~ 1088 (1102)
T PLN02735 1081 TAQAVKSL 1088 (1102)
T ss_pred HHHHHHhh
Confidence 66665443
No 6
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=3.9e-40 Score=332.45 Aligned_cols=247 Identities=41% Similarity=0.712 Sum_probs=222.3
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCce
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~ 81 (437)
.++|.+++.++++++|||+|+||..+|++|+|++++++.+|+.+++..+...+ ++||+||++++|+++.++++.+|++
T Consensus 120 ~v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~--~ivEe~I~~~~E~sv~~~~~~~G~~ 197 (372)
T PRK06019 120 VVDSAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLGSVP--CILEEFVPFEREVSVIVARGRDGEV 197 (372)
T ss_pred EeCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcCCCC--EEEEecCCCCeEEEEEEEECCCCCE
Confidence 46789999999999999999999887778999999999999999999875444 9999999977999999999989999
Q ss_pred EEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeee
Q 013729 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (437)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~~ 161 (437)
.++|+.++.+.+|.+..++.|+.+++++.+++++++.+++++|++.|++++|||+++||++||+|||||++++||++..+
T Consensus 198 ~~~p~~e~~~~~gi~~~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~EinpR~~~sg~~t~~~ 277 (372)
T PRK06019 198 VFYPLVENVHRNGILRTSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIAPRPHNSGHWTIEA 277 (372)
T ss_pred EEeCCcccEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEecCCccCcccEEhhh
Confidence 99999998888888888889999999999999999999999999999999999999889999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCceeEEEEE
Q 013729 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241 (437)
Q Consensus 162 ~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~G~Vi~ 241 (437)
+++|+|++|+|+++|+|++.... ..+++|+++++... ... .+..++..|+|++|+||+++.++++++|||.+
T Consensus 278 ~~~sqf~~~ira~~Glpl~~~~~-~~~~~m~nilg~~~---~~~----~~~~~~~~~~~~~~~ygk~~~~~~rk~Ghv~~ 349 (372)
T PRK06019 278 CSTSQFEQHLRAILGLPLGTTRL-LSPAVMVNLLGDDW---LEP----RWDALLALPGAHLHLYGKAEARPGRKMGHVTV 349 (372)
T ss_pred cCccHHHHHHHHHcCCCCCCccc-cCceEEEEEECchh---hhh----HHHHHhhCCCCEEEECCCCCCCCCCceEEEEe
Confidence 99999999999999999995443 44589999998531 112 45556678999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHhhc
Q 013729 242 VGSSMGLVESRLNSLLK 258 (437)
Q Consensus 242 ~G~s~~eA~~k~~~a~~ 258 (437)
.|+|.+++.++++.+..
T Consensus 350 ~~~~~~~~~~~~~~~~~ 366 (372)
T PRK06019 350 LGDDVEALLAKLEALAP 366 (372)
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 99999999999998875
No 7
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.4e-40 Score=317.55 Aligned_cols=247 Identities=39% Similarity=0.682 Sum_probs=221.7
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCce
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~ 81 (437)
.+.|.+|+.++++++|||+|+|.+.+||.|+|.+++++.+++........... ..++|+||++.+|+|+.+.++.+|++
T Consensus 119 ~v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~~~~-~~vlE~fV~F~~EiSvi~aR~~~G~~ 197 (375)
T COG0026 119 VVDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLAEGG-VPVLEEFVPFEREISVIVARSNDGEV 197 (375)
T ss_pred EeCCHHHHHHHHHHcCCceEEEeccccccCCCeEEeeCcccchhhHhhhhccC-ceeEEeecccceEEEEEEEEcCCCCE
Confidence 46789999999999999999999999999999999999999988666543332 24999999999999999999999999
Q ss_pred EEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeee
Q 013729 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (437)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~~ 161 (437)
.+||..++++++|++..++.|+.++++++++.++++.+++++|+|.|++.||||+++||+++++|+.||+++|||||+++
T Consensus 198 ~~yP~~eN~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~g 277 (375)
T COG0026 198 AFYPVAENVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGHWTIDG 277 (375)
T ss_pred EEecccceeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeeccCCCCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCceeEEEEE
Q 013729 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241 (437)
Q Consensus 162 ~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~G~Vi~ 241 (437)
|.+|+||+|+|+++|+||+.+.. ..+++|+++++...+.. .+..+.+.|++.+|||||.+.++++++|||..
T Consensus 278 c~~SQFEqHlRAv~glPLg~~~~-~~p~vMvNlLG~~~~~~-------~~~~~l~~p~~~lH~YGK~e~R~gRKmGHvn~ 349 (375)
T COG0026 278 CETSQFEQHLRAVLGLPLGSTTL-LSPSVMVNLLGDDVPPD-------DVKAVLALPGAHLHWYGKAEARPGRKMGHVNV 349 (375)
T ss_pred ccccHHHHHHHHHhCCCCCCccc-cCceEEEEecCCCCchh-------hhHHHHhCCCCEEEEecCccCCCCCeeeeEEe
Confidence 99999999999999999999554 56799999998642210 24567889999999999989999999999999
Q ss_pred EcCCHHHHHHHHHHhh
Q 013729 242 VGSSMGLVESRLNSLL 257 (437)
Q Consensus 242 ~G~s~~eA~~k~~~a~ 257 (437)
.+.|.+++.+.+....
T Consensus 350 ~~~~~~~~~~~~~~l~ 365 (375)
T COG0026 350 LGSDSDELEQLAALLP 365 (375)
T ss_pred ecCCHHHHHHHHHhhh
Confidence 9999777776555443
No 8
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=3.3e-40 Score=370.12 Aligned_cols=357 Identities=17% Similarity=0.200 Sum_probs=284.0
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCce
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~ 81 (437)
.+.|.+|+.++++++|||+||||++++ ||+||.+|+|.+||.++++.+....+.++||+||+| .|+++++++|++ .+
T Consensus 690 ~~~s~ee~~~~~~~igyPvVVKP~~~~-Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~G-~E~~Vd~i~dg~-~v 766 (1068)
T PRK12815 690 TATDEEEAFAFAKRIGYPVLIRPSYVI-GGQGMAVVYDEPALEAYLAENASQLYPILIDQFIDG-KEYEVDAISDGE-DV 766 (1068)
T ss_pred EeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeecC-ceEEEEEEEcCC-ce
Confidence 367899999999999999999998866 899999999999999999887333345999999997 899999999754 45
Q ss_pred EEeeeeeeEEec----CceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCc
Q 013729 82 LCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHH 157 (437)
Q Consensus 82 ~~~~~~e~~~~~----g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~ 157 (437)
+..++.+++... |+.....+|..++++..+++++++.+++++|+++|++|+||+++ +|.+|++|||||++++.++
T Consensus 767 ~i~~i~e~~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~-~~~~yviEiNpR~s~t~~~ 845 (1068)
T PRK12815 767 TIPGIIEHIEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLA-NDEIYVLEVNPRASRTVPF 845 (1068)
T ss_pred EEeeEEEEeeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEE-CCcEEEEEEeCCCCccHHH
Confidence 566667776554 33334456778999999999999999999999999999999998 4569999999999988777
Q ss_pred eeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCceeE
Q 013729 158 TIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMG 237 (437)
Q Consensus 158 ~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~G 237 (437)
.+.++|+|+.+.+++.++|.++.+............++..+.| .|+ ..++++++..+ | ++ |+++|
T Consensus 846 ~skatGv~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~~~vk~p--~f~--------f~~~~~~~~~l-g-~~---m~stG 910 (1068)
T PRK12815 846 VSKATGVPLAKLATKVLLGKSLAELGYPNGLWPGSPFIHVKMP--VFS--------YLKYPGVDNTL-G-PE---MKSTG 910 (1068)
T ss_pred HHHHHCCCHHHHHHHHHcCCChhhcccccccCCCCCeEEEEec--cCC--------hhHcccCCCcc-C-Cc---ceEcc
Confidence 8889999999999999999998765321100000001111111 122 34677777766 3 56 56999
Q ss_pred EEEEEcCCHHHHHHHHHHhhcc-CCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 238 HITIVGSSMGLVESRLNSLLKE-DSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~-i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
+||++|.|++||+.|+..+.+. ++ +.+.| +++.++.|++.+.++++.|.++||++.+| .+ |++|
T Consensus 911 e~~~~~~~~~~a~~k~~~~~~~~~p------~~~~~-~~~~~~~~k~~~~~~~~~~~~~g~~~~at----~g----t~~~ 975 (1068)
T PRK12815 911 EVMGIDKDLEEALYKGYEASDLHIP------SYGTI-FISVRDEDKPEVTKLARRFAQLGFKLLAT----EG----TANW 975 (1068)
T ss_pred eeEeccCCHHHHHHHHHHhcCCCCC------CCCeE-EEEecccchHHHHHHHHHHHHCCCEEEEc----cH----HHHH
Confidence 9999999999999999988864 32 55667 99999999999999999999999999999 66 7888
Q ss_pred HhhhhhcCCeEEEEec--cccccccCcccCCCCCCEEeccCC-CCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHH
Q 013729 317 ASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLA 393 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVi~~p~~-~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a 393 (437)
+ ++.|+++..+.+ .+.+++.++|..+....|||+|.+ ....||+. +|+.++..||||.|-- +++.|.+.|
T Consensus 976 l---~~~gi~~~~v~~~~~~~~~~~~~~~~~~~~~vin~~~~~~~~~~~~~--irr~a~~~~ip~~t~~--~~a~~~~~~ 1048 (1068)
T PRK12815 976 L---AEEGITTGVVEKVQEGSPSLLERIKQHRIVLVVNTSLSDSASEDAIK--IRDEALSTHIPVFTEL--ETAQAFLQV 1048 (1068)
T ss_pred H---HhCCCeEEEEeeccCCCccHHHHHHcCCeEEEEECCCCcccccccHH--HHHHHHHcCCCEEecH--HHHHHHHHH
Confidence 8 678999887755 556789999999999999999975 33467776 9999999999999532 366666666
Q ss_pred HHHHcc
Q 013729 394 VRMLGF 399 (437)
Q Consensus 394 ~~~l~~ 399 (437)
++.+.+
T Consensus 1049 ~~~~~~ 1054 (1068)
T PRK12815 1049 LESLAL 1054 (1068)
T ss_pred HHhcCC
Confidence 655443
No 9
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=6.6e-39 Score=359.47 Aligned_cols=340 Identities=17% Similarity=0.235 Sum_probs=274.0
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~d~~G 79 (437)
.+++.+|+.++++++|||+||||++++ ||+||.+|+|++||.++++.+.. ....++||+||+++.|++++++++ +|
T Consensus 689 ~v~s~ee~~~~~~~igyPvIVKP~~~~-Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d-~g 766 (1050)
T TIGR01369 689 TATSVEEAVEFASEIGYPVLVRPSYVL-GGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSD-GE 766 (1050)
T ss_pred EECCHHHHHHHHHhcCCCEEEEECCCC-CCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEe-CC
Confidence 467899999999999999999998865 89999999999999999987632 224499999999669999999987 46
Q ss_pred ceEEeeeeeeEEec----CceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 80 SILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 80 ~~~~~~~~e~~~~~----g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
+++...+.+++... |+....++|..++++..+++++++.+++++||++|++|+||+++ +|.+|++|||||++++.
T Consensus 767 ~v~i~~i~e~~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~-~~~~yvIEvNpR~s~t~ 845 (1050)
T TIGR01369 767 EVLIPGIMEHIEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVK-DGEVYVIEVNPRASRTV 845 (1050)
T ss_pred EEEEEEEEEeecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEE-CCeEEEEEEeCCCCchH
Confidence 77777777776554 33333344457999999999999999999999999999999998 56799999999999876
Q ss_pred CceeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCce
Q 013729 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRK 235 (437)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~ 235 (437)
.++..++|+|+.+.+++.++|.++.+........ ....+.+.| .|+ ..++++++..+ | ++ +++
T Consensus 846 p~vs~atGi~l~~~~~~~~lG~~l~~~~~~~~~~--~~~~~vK~p--~f~--------~~~~~~~d~~l-g-~e---mks 908 (1050)
T TIGR01369 846 PFVSKATGVPLIKLATRVMLGKKLEELGVGKEKE--PKYVAVKEP--VFS--------FSKLAGVDPVL-G-PE---MKS 908 (1050)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCccccccccCCC--CCeEEEEec--cCC--------hhhcCCCCCcC-C-ce---eEe
Confidence 6777889999999999999999988653211000 001111122 122 34577888776 3 67 569
Q ss_pred eEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHH
Q 013729 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFS 315 (437)
Q Consensus 236 ~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~ 315 (437)
+|++|++|+|++||+.|+..+.+. +. ++++.| ++++++.|++.+.+.++.|.++||++.+| .+ |++
T Consensus 909 tge~~~~g~~~~~a~~ka~~~~~~-~~----p~~~~~-~~~~~~~~k~~~~~~~~~l~~~g~~~~at----~g----ta~ 974 (1050)
T TIGR01369 909 TGEVMGIGRDLAEAFLKAQLSSGN-RI----PKKGSV-LLSVRDKDKEELLDLARKLAEKGYKLYAT----EG----TAK 974 (1050)
T ss_pred cCceEecCCCHHHHHHHHHHhCCC-Cc----CCCCeE-EEEeccCchHHHHHHHHHHHHCCCEEEEe----ch----HHH
Confidence 999999999999999999988863 32 145666 89999999999999999999999999999 66 788
Q ss_pred hHhhhhhcCCeEEEEec--cccccccCcccCCCCCCEEeccCC--CCCCCChhhHHHhhhCCCCCceEE
Q 013729 316 YASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVPVAT 380 (437)
Q Consensus 316 ~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVi~~p~~--~~~~~g~~~l~~~~~~~~gvp~~t 380 (437)
|+ ++.|++|..+.+ .+.+++.++|..+....|||+|.. ....+|+. +|+.++..||||.|
T Consensus 975 ~l---~~~gi~~~~~~~~~~~~~~~~~~i~~~~i~lvin~~~~~~~~~~~g~~--iRr~Ai~~~ip~~t 1038 (1050)
T TIGR01369 975 FL---GEAGIKPELVLKVSEGRPNILDLIKNGEIELVINTTSKGAGTATDGYK--IRREALDYGVPLIT 1038 (1050)
T ss_pred HH---HHCCCceEEEeecCCCCccHHHHHHcCCeEEEEECCCCCcccccccHH--HHHHHHHcCCCEEe
Confidence 98 577999877644 456899999999999999999974 23456777 99999999999995
No 10
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=4.9e-38 Score=353.60 Aligned_cols=353 Identities=17% Similarity=0.232 Sum_probs=279.0
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~d~~G 79 (437)
.+.+.+|+.++++++|||+||||++++ ||+||.+|+|.+||.++++.+.. ....++||+||+|.+|+++++++|++
T Consensus 689 ~~~s~ee~~~~~~~igyPvvVKP~~~~-Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~- 766 (1066)
T PRK05294 689 TATSVEEALEVAEEIGYPVLVRPSYVL-GGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGE- 766 (1066)
T ss_pred EECCHHHHHHHHHhcCCCeEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCC-
Confidence 357899999999999999999998765 89999999999999999987532 23459999999986699999998654
Q ss_pred ceEEeeeeeeEEec----CceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 80 SILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 80 ~~~~~~~~e~~~~~----g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
.++..++.+++... |+....++|..++++..+++++++.+++++||++|++|+||+++ +|.+||+|||||++++.
T Consensus 767 ~v~i~~i~e~i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~-~~~~yViEiNpR~s~t~ 845 (1066)
T PRK05294 767 DVLIGGIMEHIEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVK-DDEVYVIEVNPRASRTV 845 (1066)
T ss_pred eEEEeeeEEeeeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEE-CCeEEEEEEecCCCccH
Confidence 45666666766543 34444456678999999999999999999999999999999998 56799999999999877
Q ss_pred CceeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCce
Q 013729 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRK 235 (437)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~ 235 (437)
.+...++|+|+.+..++.++|.++++..... ...-..++.+.| .|+ ..++++++..+ | ++ |++
T Consensus 846 ~~~s~atGi~~~~~~~~~~lG~~l~~~~~~~--~~~~~~~~vk~p--~fs--------~~~~~~~~~~l-g-~~---m~s 908 (1066)
T PRK05294 846 PFVSKATGVPLAKIAARVMLGKKLAELGYTK--GLIPPYVAVKEA--VFP--------FNKFPGVDPLL-G-PE---MKS 908 (1066)
T ss_pred HHHHHHhCccHHHHHHHHHcCCChhhcCCCc--cCCCCceEEEec--cCC--------hhhccCCCCcc-C-ce---eee
Confidence 7778889999999999999999988753211 000011111112 121 34577888776 3 67 569
Q ss_pred eEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHH
Q 013729 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFS 315 (437)
Q Consensus 236 ~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~ 315 (437)
+|+||++|.|++||+.|+..+.+. +. + +.+.+ +++.++.|++.+.+.++.|.++||++.+| .+ |.+
T Consensus 909 tge~~~~~~~~~~a~~k~~~~~~~-~~---p-~~~~~-lisv~~~dK~~l~~~a~~l~~~G~~i~aT----~g----T~~ 974 (1066)
T PRK05294 909 TGEVMGIDRTFGEAFAKAQLAAGN-RL---P-TSGTV-FLSVRDRDKEEVVELAKRLLELGFKILAT----SG----TAK 974 (1066)
T ss_pred cCceeecCCCHHHHHHHHHHhccc-cc---C-CCCeE-EEEeccccHHHHHHHHHHHHHcCCEEEEc----cH----HHH
Confidence 999999999999999999988853 22 1 44566 88999999999999999999999999999 66 799
Q ss_pred hHhhhhhcCCeEEEEec--cccccccCcccCCCCCCEEeccCC-CCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHH
Q 013729 316 YASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLL 392 (437)
Q Consensus 316 ~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVi~~p~~-~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~ 392 (437)
|+ ++.|++|..+.. .+.+++.++|..+....|||+|.. ....+|+. +|+.++..||||.|-. +.+.|.+.
T Consensus 975 ~l---~~~gi~~~~v~~~~~~~~~i~~~i~~~~idlvIn~~~~~~~~~~g~~--iRr~Av~~~ip~~T~~--~~a~~~v~ 1047 (1066)
T PRK05294 975 FL---REAGIPVELVNKVHEGRPHIVDLIKNGEIDLVINTPTGRQAIRDGFS--IRRAALEYKVPYITTL--AGARAAVK 1047 (1066)
T ss_pred HH---HHCCCeeEEEeeccCcCccHHHHHHcCCeEEEEECCCCcccccccHH--HHHHHHHcCCCEEecH--HHHHHHHH
Confidence 98 577999876644 456789999999999999999975 23456776 9999999999999632 35555555
Q ss_pred HHH
Q 013729 393 AVR 395 (437)
Q Consensus 393 a~~ 395 (437)
|+.
T Consensus 1048 al~ 1050 (1066)
T PRK05294 1048 AIE 1050 (1066)
T ss_pred HHH
Confidence 543
No 11
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=4.6e-37 Score=308.21 Aligned_cols=235 Identities=43% Similarity=0.753 Sum_probs=206.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCce
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~ 81 (437)
.+.+.+++.++++++|||+|+||..+|++|+|+++|+|.+|+.++++.+.... +|+||||++++|+++.++++.+|++
T Consensus 118 ~~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~--~lvEe~I~~~~E~sv~~~~~~~G~~ 195 (352)
T TIGR01161 118 VIKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELGDRE--CIVEEFVPFERELSVIVARSADGET 195 (352)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcCCCc--EEEEecCCCCeEEEEEEEEcCCCCE
Confidence 45788999999999999999999877678999999999999999998875444 9999999977999999998888998
Q ss_pred EEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeee
Q 013729 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (437)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~~ 161 (437)
.++++.++..+.|.+..++.|+.++++..+++++++.+++++||+.|++++||++++||++||+|||||++++++++..+
T Consensus 196 ~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~EinpR~~~sg~~~~~~ 275 (352)
T TIGR01161 196 AFYPVVENIHQDGILRYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINELAPRVHNSGHYTLDG 275 (352)
T ss_pred EEECCcccEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEecCCCCCcCcCchhh
Confidence 88998888877887777788999999999999999999999999999999999999889999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCceeEEEEE
Q 013729 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241 (437)
Q Consensus 162 ~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~G~Vi~ 241 (437)
++.|+|++|+|+++|+|++..... .+++|+++++.. ..... .+..+...|+|++|||++++.++++++|||..
T Consensus 276 ~~~s~f~~~~ra~~g~~l~~~~~~-~~~~m~n~~~~~--~~~~~----~~~~~~~~~~~~~~~y~k~~~~~~rk~Ghi~~ 348 (352)
T TIGR01161 276 CSTSQFEQHLRAILGLPLGSTELL-LPSVMVNLLGTE--DDVIP----LWEEILALPGAKLHWYGKAEVRPGRKVGHVNL 348 (352)
T ss_pred ccccHHHHHHHHHcCCCCCCcccc-CCEEEEEEecCc--cchHH----HHHHHHhCCCCEEEECCCCCCCCCCcceEEEe
Confidence 999999999999999999986543 348999999863 00111 44455677999999999988999999999999
Q ss_pred EcCC
Q 013729 242 VGSS 245 (437)
Q Consensus 242 ~G~s 245 (437)
.|++
T Consensus 349 ~~~~ 352 (352)
T TIGR01161 349 VGSD 352 (352)
T ss_pred ecCC
Confidence 9875
No 12
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=4.8e-35 Score=296.57 Aligned_cols=253 Identities=26% Similarity=0.396 Sum_probs=213.6
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC----CCCcEEEeeccCCCeEEEEEEEEcC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG----FDRGLYVEKWAPFVKELAVIVVRGR 77 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~----~~~~~lvEe~I~g~~E~sv~~~~d~ 77 (437)
.+++.+++.++++++|||+|+||..++ +|+|+++|+|.+||.++++.+.. ..+.+||||||+++.|+++.++++.
T Consensus 121 ~~~~~~~~~~~~~~~g~P~VvKP~~g~-~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~~~~~~ 199 (380)
T TIGR01142 121 FADSLDELREAVEKIGYPCVVKPVMSS-SGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLLTVRHV 199 (380)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEECCCc-CCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEEEEEcC
Confidence 367889999999999999999997654 99999999999999999987632 2345999999997789999999888
Q ss_pred CCceEEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCc
Q 013729 78 DKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHH 157 (437)
Q Consensus 78 ~G~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~ 157 (437)
+|++..++..++....+.+...+.|+.++++..+++.+++.+++++||+.|++|+||+++++ .+||+|||||+++++++
T Consensus 200 ~g~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~-~~~viEinpR~~~~~~~ 278 (380)
T TIGR01142 200 DGNTTFCAPIGHRQIDGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGD-EVIFSEVSPRPHDTGMV 278 (380)
T ss_pred CCCEEEecCcceEEeCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC-cEEEEEeecCCCCCceE
Confidence 88866666556666677766677899999999999999999999999999999999999865 59999999999999999
Q ss_pred eeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccC-CCccccccchhhhhccCCceEEEeccccccCCcee
Q 013729 158 TIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKM 236 (437)
Q Consensus 158 ~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~ 236 (437)
++..+++|++++++|+++|+|++.... ..++++.++++...+. ..+. ++++....|+|++++|+++..++++++
T Consensus 279 ~~~~~g~~~~~~~~r~~~G~~~~~~~~-~~~~~~~~i~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~k~~~~~~~~~ 353 (380)
T TIGR01142 279 TLISQGLSEFALHVRAILGLPIPGIPQ-LGPAASAVIKAKVTGYSPAFR----GLEKALSVPNTQVRLFGKPEAYVGRRL 353 (380)
T ss_pred EeeecCCCHHHHHHHHHcCCCCCCccc-cCCceEEEEEcccccccchhh----HHHHHHcCCCCEEEECCCCcCCCCCcC
Confidence 888889999999999999999986543 4457778888764331 1122 445556679999999998777789999
Q ss_pred EEEEEEcCCHHHHHHHHHHhhccCC
Q 013729 237 GHITIVGSSMGLVESRLNSLLKEDS 261 (437)
Q Consensus 237 G~Vi~~G~s~~eA~~k~~~a~~~i~ 261 (437)
|||++.|+|.+|+..+++.+.+.++
T Consensus 354 G~v~~~~~s~~~~~~~~~~~~~~i~ 378 (380)
T TIGR01142 354 GVALATAKSVEAARERAEEVAHAVE 378 (380)
T ss_pred EEEEEecCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999887765
No 13
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=2.4e-33 Score=285.54 Aligned_cols=254 Identities=28% Similarity=0.436 Sum_probs=210.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC----CCcEEEeeccCCCeEEEEEEEEcC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF----DRGLYVEKWAPFVKELAVIVVRGR 77 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~----~~~~lvEe~I~g~~E~sv~~~~d~ 77 (437)
.++|.+|+.++++++|||+|+||..+ ++|+|+++|+|.+|+.++++.+... .+.+||||||+++.|+++.++++.
T Consensus 134 ~~~s~~~l~~~~~~~g~P~VvKP~~g-~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv~~~~~~ 212 (395)
T PRK09288 134 FADSLEELRAAVEEIGYPCVVKPVMS-SSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITLLTVRAV 212 (395)
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCC-cCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEEEEEEcC
Confidence 46789999999999999999999754 5999999999999999999876321 245999999997699999999987
Q ss_pred CCceEEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCc
Q 013729 78 DKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHH 157 (437)
Q Consensus 78 ~G~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~ 157 (437)
+|+..+++..++....|++...+.|+.++++..+++++++.+++++|+++|++|+||+++++ .+||+|||||+++++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~-~~~viEinpR~~~~~~~ 291 (395)
T PRK09288 213 DGGTHFCAPIGHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGD-EVYFSEVSPRPHDTGMV 291 (395)
T ss_pred CCCEEEecCcccEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-eEEEEEecCCCCCCcce
Confidence 76666666666666667766677899999999999999999999999999999999999866 59999999999999888
Q ss_pred eeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccC-CCccccccchhhhhccCCceEEEeccccccCCcee
Q 013729 158 TIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKM 236 (437)
Q Consensus 158 ~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~ 236 (437)
+...+++|+++++++.++|+|+++... ..++++..+++...+. ..+. ++++....|++++++|+++..++++++
T Consensus 292 ~~~~~g~~~~~~~~~~~lG~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~g~~~~~~~k~~~~~~~~l 366 (395)
T PRK09288 292 TLISQNLSEFELHARAILGLPIPDIRL-YSPAASAVILAEGESANPSFD----GLAEALAVPGTDVRLFGKPEIRGGRRM 366 (395)
T ss_pred eeeecccCHHHHHHHHHcCCCCCcccc-cCCceeEEEeccccccccchh----hHHHHhcCCCCEEEEecCCCCCCCCee
Confidence 887789999999999999999865443 2345666777654332 1222 444555679999999987776678999
Q ss_pred EEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 237 GHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 237 G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
|||++.|+|.++|..+++++.+.+++
T Consensus 367 G~v~~~g~~~~~a~~~~~~~~~~i~~ 392 (395)
T PRK09288 367 GVALATGEDVEEAREKAKEAASKVKV 392 (395)
T ss_pred EEEEeecCCHHHHHHHHHHHHhheee
Confidence 99999999999999999999887763
No 14
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=8e-34 Score=265.15 Aligned_cols=252 Identities=26% Similarity=0.401 Sum_probs=217.4
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc----CCCCcEEEeeccCCCeEEEEEEEEcCC
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG----GFDRGLYVEKWAPFVKELAVIVVRGRD 78 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~----~~~~~~lvEe~I~g~~E~sv~~~~d~~ 78 (437)
++|.+|+.++++++||||++||.-++ +|+|..+|+++++++++|+.+. ...++++||+||+++.|+++..++..+
T Consensus 135 a~s~~e~~~a~~~iGfPcvvKPvMSS-SGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~ 213 (394)
T COG0027 135 ADSLEELRAAVEKIGFPCVVKPVMSS-SGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVD 213 (394)
T ss_pred cccHHHHHHHHHHcCCCeeccccccc-CCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEec
Confidence 57899999999999999999996554 8999999999999999999874 234789999999998999999998777
Q ss_pred CceEEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce
Q 013729 79 KSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (437)
Q Consensus 79 G~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~ 158 (437)
|...++.+..|.+.+|++..++.|..+++...++.+.+++++.++||..|+|++|+|+.. +++||.|+.|||++||+.|
T Consensus 214 ~~~~Fc~PIGHrq~dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~g-DeV~FsEVSPRPHDTGmVT 292 (394)
T COG0027 214 GTGSFCAPIGHRQEDGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKG-DEVIFSEVSPRPHDTGMVT 292 (394)
T ss_pred CCCCcCCCcccccCCCChhcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeC-CEEEEeecCCCCCCCceEE
Confidence 765344455788889999999999999999999999999999999999999999999985 4699999999999999999
Q ss_pred eeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccC-CCccccccchhhhhccCCceEEEeccccccCCceeE
Q 013729 159 IESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMG 237 (437)
Q Consensus 159 ~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~G 237 (437)
+.+...|-|+.|+|+++|+|++..... .+++...+++..... ..|. ++.+++..|+.++++||+|+...++|+|
T Consensus 293 LiSq~lsEF~LH~RAiLGLPi~~i~~~-~P~AS~vI~~~~~~~~~~f~----~l~~AL~~p~t~vRlFGKP~~~~~RRmG 367 (394)
T COG0027 293 LISQDLSEFALHVRAILGLPIPEIRQI-SPAASAVILAQETSQAPTFD----GLAEALGVPDTQVRLFGKPEADGGRRLG 367 (394)
T ss_pred EEeccchHHHHHHHHHhCCCccceeee-cccccceeeccccccCCchh----hHHHHhcCCCceEEEecCCcccCCceee
Confidence 999999999999999999999965442 233333444432211 2355 7888899999999999999999999999
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCC
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDS 261 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~ 261 (437)
-.+++++|.++|++++.+++..+.
T Consensus 368 VALA~a~~Ve~Are~A~~aa~~i~ 391 (394)
T COG0027 368 VALATAESVEEARERARKAASAIE 391 (394)
T ss_pred EEEecCccHHHHHHHHHHHHhhee
Confidence 999999999999999999998754
No 15
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=1.7e-32 Score=285.19 Aligned_cols=288 Identities=19% Similarity=0.248 Sum_probs=227.1
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+.+.+|+.++++++|||+||||+.+| ||+||++|++.+||.++++.+.. .++.+++|+||++++|++++++.|
T Consensus 138 v~~~~e~~~~a~~igyPvvIKp~~Gg-GG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d 216 (499)
T PRK08654 138 IEDIEEAKEIAEEIGYPVIIKASAGG-GGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILAD 216 (499)
T ss_pred CCCHHHHHHHHHHhCCCEEEEeCCCC-CCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEc
Confidence 57899999999999999999998877 99999999999999999886421 124599999999889999999999
Q ss_pred CCCceEEeeee-eeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.+|+++.++.. +.+++.+.......|++ +++++.++|.+.+.++++++||.|++++||+++ +|++||+|||||++++
T Consensus 217 ~~G~vv~l~~recsiqrr~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~-~g~~yflEiNpRlqve 295 (499)
T PRK08654 217 KHGNVIHLGDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS-NGNFYFLEMNTRLQVE 295 (499)
T ss_pred CCCCEEEEeeeccccccCccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEE-CCcEEEEEEECCCCCC
Confidence 88988766544 34555555455567875 899999999999999999999999999999996 6789999999999986
Q ss_pred CCceeeeccccHHHHHHHHHhCCCCCCCCC---CCCcEEEEEeeccCccCCCccccccchhhhhccC---CceE--EEec
Q 013729 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP---GATV--HWYD 226 (437)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~a~G~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p---g~~~--~~~~ 226 (437)
.+++...+|+|+++++++.++|.+++.... ..++++.++++++ +|...|.|..+.+..+ ..| ++.+ .++.
T Consensus 296 h~vte~~tGvDlv~~~i~~A~G~~l~~~~~~~~~~g~ai~~ri~ae-~p~~~f~P~~G~i~~~-~~p~~~~vr~d~~~~~ 373 (499)
T PRK08654 296 HPITEMVTGIDIVKEQIKIAAGEELSFKQEDITIRGHAIECRINAE-DPLNDFAPSPGKIKRY-RSPGGPGVRVDSGVHM 373 (499)
T ss_pred CceeehhhCCCHHHHHHHHhcCCCCCCcccccccceEEEEEEEEee-cCccCcCCCCCeEEEE-EcCCCCCEEEECcccC
Confidence 666677899999999999999999986432 1245677888876 4544576643333332 333 3322 2232
Q ss_pred cccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe
Q 013729 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 304 (437)
Q Consensus 227 ~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~ 304 (437)
+..+.+ ++.+|+++++|+|+++|++++.++++++. |.|-.++.+.+..+...-+.....+++++.
T Consensus 374 g~~v~~~~ds~~ak~i~~g~~r~~a~~~~~~al~~~~-------------i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~ 440 (499)
T PRK08654 374 GYEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYV-------------IVGVKTNIPFHKAVMENENFVRGNLHTHFI 440 (499)
T ss_pred CCCcCCccCchhheeeEeCCCHHHHHHHHHHHHhhcE-------------EECccCCHHHHHHHhCCHhhcCCCccchhh
Confidence 223333 56789999999999999999999998753 567789999999998887777777888876
Q ss_pred cCC
Q 013729 305 SAH 307 (437)
Q Consensus 305 s~h 307 (437)
.-|
T Consensus 441 ~~~ 443 (499)
T PRK08654 441 EEE 443 (499)
T ss_pred hcC
Confidence 433
No 16
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=9.3e-32 Score=277.89 Aligned_cols=285 Identities=19% Similarity=0.257 Sum_probs=216.4
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+.+.+|+.++++++|||+||||..+| ||+|+++|+|++||.++++.+.. ..+.+++|+||+|++|+++++++
T Consensus 137 ~~~~~~e~~~~~~~igyPvvvKP~~gg-gg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~ 215 (447)
T PRK05586 137 EIENEEEALEIAKEIGYPVMVKASAGG-GGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILG 215 (447)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEECCCC-CCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEE
Confidence 357889999999999999999998877 99999999999999998875421 12459999999988999999999
Q ss_pred cCCCceEEeeee-eeEEecCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 76 GRDKSILCYPVV-ETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 76 d~~G~~~~~~~~-e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
|.+|+++.+... +..++.+.......|+ .+++++.+++++++.+++++||+.|++++||+++++|++||+|||||+++
T Consensus 216 d~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~g~~~~iEvNpR~~~ 295 (447)
T PRK05586 216 DNYGNVVHLGERDCSLQRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQV 295 (447)
T ss_pred CCCCCEEEEeceecceEecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCCCCEEEEEEECCCCC
Confidence 988888766433 2234434334445676 48999999999999999999999999999999998899999999999998
Q ss_pred CCCceeeeccccHHHHHHHHHhCCCCCCCCC--C-CCcEEEEEeeccCccCCCccccccchhhhhccCCc-eEEE----e
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGA-TVHW----Y 225 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~-~~~~----~ 225 (437)
+.+++..++|+|+++++++.++|.+++.... . ..+++..+++++ .+...|.|..+.+.. ...|+. .+++ +
T Consensus 296 ~~~~t~~~tGid~~~~~i~~a~G~~l~~~~~~~~~~g~a~~~~i~a~-~~~~~~~p~~G~~~~-~~~~~~~~vr~~~~~~ 373 (447)
T PRK05586 296 EHPITEMITGVDLVKEQIKIAYGEKLSIKQEDIKINGHSIECRINAE-DPKNGFMPCPGKIEE-LYIPGGLGVRVDSAVY 373 (447)
T ss_pred CccceehhhCCCHHHHHHHHHcCCCCCCcccccCcCceEEEEEeecc-CcccCccCCCCEEEE-EEcCCCCCeEeecccc
Confidence 7778888999999999999999999975332 1 234566677755 333345542222222 234432 2222 2
Q ss_pred ccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE
Q 013729 226 DKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 302 (437)
Q Consensus 226 ~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~ 302 (437)
.+..+.+ ++++|+|+++|+|++||++++.++++.+. +.|..++.+.+..+...-+...-.+.++
T Consensus 374 ~g~~v~~~~~~~~~~vi~~g~~~~~a~~~~~~al~~~~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~t~ 439 (447)
T PRK05586 374 SGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFI-------------IEGVNTNIDFQFIILEDEEFIKGTYDTS 439 (447)
T ss_pred CCCccCCccCchhheeEEEcCCHHHHHHHHHHHHhhcE-------------EECccCCHHHHHHHhCCHhhcCCccccH
Confidence 2222222 46899999999999999999999998753 4677889999999887655544455544
No 17
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=2.6e-31 Score=274.76 Aligned_cols=286 Identities=20% Similarity=0.260 Sum_probs=213.9
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+.+.+|+.++++++|||+||||..++ ||+|+++|+|.+||.++++.+.. ..+.++|||||+|++|++++++.|
T Consensus 138 ~~~~~e~~~~~~~ig~PvvvKP~~g~-gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d 216 (449)
T TIGR00514 138 VEDEEENVRIAKRIGYPVIIKATAGG-GGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLAD 216 (449)
T ss_pred cCCHHHHHHHHHHhCCCEEEEeCCCC-CCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEc
Confidence 56889999999999999999998876 89999999999999999875421 124599999999889999999998
Q ss_pred CCCceEEeeee-eeEEecCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 77 RDKSILCYPVV-ETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.+|++..+... +.+.+.+.......|+ .++++..++|++.+.+++++||+.|++|+||+++++|++||+|||||++++
T Consensus 217 ~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~g~~~viEiNpR~~~~ 296 (449)
T TIGR00514 217 KYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVE 296 (449)
T ss_pred CCCCEEEEeccccCceecccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCCCCEEEEEEECCCCCC
Confidence 88887665432 1222222223334455 599999999999999999999999999999999988889999999999987
Q ss_pred CCceeeeccccHHHHHHHHHhCCCCCCCCCC--C-CcEEEEEeeccCccCCCccccccchhhh--hccCCceEEE--ecc
Q 013729 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSMK--T-PAAIMYNLLGEAEGERGFYLAHQLIGKA--LSIPGATVHW--YDK 227 (437)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~pg~~~~~--~~~ 227 (437)
.+++..++|+|+++.+++.++|.+++..... . .+++..+++++ ++...|.|....+..+ ...||+.+.. ..+
T Consensus 297 ~~~~~~~tGvdl~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~~~-~~~~~~~p~~g~~~~~~~~~~~gv~~~~~~~~G 375 (449)
T TIGR00514 297 HPVTEMITGVDLIKEQIRIAAGEPLSLKQEDVVVRGHAIECRINAE-DPIKTFLPSPGRITRYLPPGGPGVRWDSHVYSG 375 (449)
T ss_pred cceeehhcCCcHHHHHHHHHCCCCCCCccccCCCceEEEEEEeecc-CCCCCeeeCCCEEEEEEcCCCCCEeeccCccCC
Confidence 6777779999999999999999999854322 1 23455566654 3333344432223221 2234544322 222
Q ss_pred ccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013729 228 PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 303 (437)
Q Consensus 228 ~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v 303 (437)
..+.+ ++++|+||++|+|++||++++.++++.+. |.|..++.+.++.+...-+...-.+++++
T Consensus 376 ~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~-------------i~g~~tn~~~l~~~~~~~~f~~~~~~t~~ 440 (449)
T TIGR00514 376 YTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFI-------------IDGIKTTIPFHQRILEDENFQHGGTNIHY 440 (449)
T ss_pred CEeCccccccceEEEEEcCCHHHHHHHHHHHHhhcE-------------EeCccCCHHHHHHHhcChhhcCCceeehh
Confidence 22322 46899999999999999999999998764 47778999999998866555444555553
No 18
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=1.5e-31 Score=277.37 Aligned_cols=288 Identities=17% Similarity=0.228 Sum_probs=218.5
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+.+.+++.++++++|||+||||..+| ||+||++|+|.+||.++++.+.. ..+.++||+||++++|+++++++
T Consensus 140 ~v~~~~e~~~~~~~igyPvvvKp~~gg-gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~ 218 (467)
T PRK12833 140 VVASLDAALEVAARIGYPLMIKAAAGG-GGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILG 218 (467)
T ss_pred CcCCHHHHHHHHHHhCCCEEEEECCCC-CCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEe
Confidence 457899999999999999999998877 99999999999999998865311 12459999999977999999998
Q ss_pred cCCCceEEeeeeeeEEecCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC-CCcEEEEEEcCCCCC
Q 013729 76 GRDKSILCYPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHN 153 (437)
Q Consensus 76 d~~G~~~~~~~~e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~-dg~~~viEiNpR~~~ 153 (437)
|+++.+..++..+.+++.........|+ .++++..+++.+++.+++++|||+|++++||++++ +|++||+|||||+++
T Consensus 219 dg~~~~~~~~~~~~~~r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~ 298 (467)
T PRK12833 219 DGERVVHLFERECSLQRRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQV 298 (467)
T ss_pred CCCcEEEEEEeecccccCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCc
Confidence 7654344444434444434444455565 48999999999999999999999999999999984 688999999999998
Q ss_pred CCCceeeeccccHHHHHHHHHhCCCCCCCCC---CCCcEEEEEeeccCccCCCccccccchhhh--hccCCce--EEEec
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKA--LSIPGAT--VHWYD 226 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~pg~~--~~~~~ 226 (437)
+.+++...+|+|+++++++.++|.|++.... ..++++..+++++ ++...|.|..+.+..+ ...||+. ...+.
T Consensus 299 ~~~~te~~tGvdl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae-~~~~~~~p~~g~i~~~~~~~~~gvr~d~~~~~ 377 (467)
T PRK12833 299 EHPVTEAITGIDLVQEMLRIADGEPLRFAQGDIALRGAALECRINAE-DPLRDFFPNPGRIDALVWPQGPGVRVDSLLYP 377 (467)
T ss_pred chhhhHHHhCCCHHHHHHHHHCCCCCCCCccccCcceEEEEEEEecc-cCCCCcccCCCEEEEEEcCCCCCeEEecceeC
Confidence 6555666889999999999999999985321 2344666777765 3444455533333322 1235543 33333
Q ss_pred cccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe
Q 013729 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 304 (437)
Q Consensus 227 ~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~ 304 (437)
+..+.+ ++++|+|+++|+|++||++++.++++++. |.|..++.+.+..+.+.-+.....++++++
T Consensus 378 G~~v~~~~ds~l~~vi~~g~~~~~a~~~~~~al~~~~-------------i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~ 444 (467)
T PRK12833 378 GYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELR-------------IDGMKTTAPLHRALLADADVRAGRFHTNFL 444 (467)
T ss_pred cCEeCCCcCcchheEEEEcCCHHHHHHHHHHHHHhcE-------------eECccCCHHHHHHHhcChhhcCCCcccHHH
Confidence 333433 56899999999999999999999998764 466789999999988776666666777654
No 19
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=4.9e-31 Score=273.83 Aligned_cols=287 Identities=18% Similarity=0.237 Sum_probs=220.8
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+.+.+++.++++++|||+||||..+| ||+||++|+|++||.++++.+.. ....+++|+||++++|++++++.|
T Consensus 137 ~~~~~e~~~~~~~igyPvvvKp~~gg-Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d 215 (472)
T PRK07178 137 LADLDEALAEAERIGYPVMLKATSGG-GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILAD 215 (472)
T ss_pred CCCHHHHHHHHHHcCCcEEEEeCCCC-CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEE
Confidence 57889999999999999999998877 99999999999999998865411 123599999999889999999999
Q ss_pred CCCceEE-eeeeeeEEecCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 77 RDKSILC-YPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 77 ~~G~~~~-~~~~e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.+|+++. ++..+.+++.+.......|+ .++++..+++++.+.+++++|||.|++++||+++++|++||+|||||++++
T Consensus 216 ~~G~~v~~~er~~s~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~~y~iEiNpRl~~~ 295 (472)
T PRK07178 216 SHGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTRVQVE 295 (472)
T ss_pred CCCCEEEEEccccceEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCCEEEEEEeCCcCCC
Confidence 8888654 43445555545445556677 599999999999999999999999999999999878889999999999987
Q ss_pred CCceeeeccccHHHHHHHHHhCCCCCCCCC--C-CCcEEEEEeeccCccCCCccccccchhhhh--ccCCce--EEEecc
Q 013729 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQLIGKAL--SIPGAT--VHWYDK 227 (437)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~a~G~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~pg~~--~~~~~~ 227 (437)
.+++...+|+|+++++++.++|.+++.... . .++++..++.++ ++...|.|..+.+..+. .-|++. ...+.+
T Consensus 296 ~~~te~~tGvdl~~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae-~~~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~g 374 (472)
T PRK07178 296 HTITEEITGIDIVREQIRIASGLPLSYKQEDIQHRGFALQFRINAE-DPKNDFLPSFGKITRYYAPGGPGVRTDTAIYTG 374 (472)
T ss_pred ccceeeeeCcCHHHHHHHHHCCCCCCCccccCCcceEEEEEEEeee-cCCcCEecCceEEEEEEcCCCCCeEEEecccCC
Confidence 677777899999999999999999986432 1 244566666655 45445666433333221 123443 222223
Q ss_pred ccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe
Q 013729 228 PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 304 (437)
Q Consensus 228 ~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~ 304 (437)
..+.+ +.-.|+|+++|.|++||++++.++++++. |.|-.++.+.+..+...-+.....++++++
T Consensus 375 ~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~-------------i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~ 440 (472)
T PRK07178 375 YTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMR-------------VQGVKTTIPYYQEILRNPEFRSGQFNTSFV 440 (472)
T ss_pred CEeCcccCCccceEEEEcCCHHHHHHHHHHHHhhcE-------------EeCccCCHHHHHHHhcCHhhcCCCccchhH
Confidence 33333 23459999999999999999999998764 466688999999988776666666777765
No 20
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=2.6e-32 Score=272.51 Aligned_cols=285 Identities=18% Similarity=0.244 Sum_probs=230.1
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+.+.+++..+++++|||++||++.+| ||+||+++++++|+.+.++.+.. .+++++||+|++-+++++++++.|
T Consensus 138 ~qd~~~~~~~A~eiGyPVlIKAsaGG-GGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD 216 (645)
T COG4770 138 IQDAAELVAIAEEIGYPVLIKASAGG-GGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFAD 216 (645)
T ss_pred ccCHHHHHHHHHhcCCcEEEEeccCC-CCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEec
Confidence 56889999999999999999999888 99999999999999999986531 236799999999999999999999
Q ss_pred CCCceEEeeee-eeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.+|++++..-. |++++.++....-.|++ |++++++.|.+.+.+++++.||.|..+|||+++.++.+||+|+|+|++-
T Consensus 217 ~HGNvv~LgERdCSlQRRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQV- 295 (645)
T COG4770 217 QHGNVVHLGERDCSLQRRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQV- 295 (645)
T ss_pred CCCCEEEeeccccchhhhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceec-
Confidence 99998876655 88999888777788998 9999999999999999999999999999999999999999999999997
Q ss_pred CCceee-eccccHHHHHHHHHhCCCCCCCCCC---CCcEEEEEeeccCccCCCccccccchhhhhccC---Cc--eEEEe
Q 013729 155 GHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMK---TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP---GA--TVHWY 225 (437)
Q Consensus 155 g~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p---g~--~~~~~ 225 (437)
.|+.++ .+|+|++++++|.+.|.+|+..+.. .++++..+++++. |...|-|..+.+.. +..| ++ |.-+.
T Consensus 296 EHPVTE~iTGiDLVewqiRVA~GekL~~~Q~di~l~GhAiE~RiyAED-p~r~FLPs~G~l~~-~~~P~~~~vRvDsGV~ 373 (645)
T COG4770 296 EHPVTELITGIDLVEWQIRVASGEKLPFTQDDIPLNGHAIEARIYAED-PARGFLPSTGRLTR-YRPPAGPGVRVDSGVR 373 (645)
T ss_pred cccchhhhhhhHHHHHHHHHhcCCcCCcccccccccceeEEEEEeccC-cccCccCCCceeEe-ecCCCCCceecccCcc
Confidence 676665 5689999999999999999986553 3678889999874 44567764333322 2223 22 21122
Q ss_pred ccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013729 226 DKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 303 (437)
Q Consensus 226 ~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v 303 (437)
.+.++.+ +..+..++++|.|+++|++++.+++..+. |-|..++.+++..+...-...+-..++.+
T Consensus 374 ~G~~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~~~-------------v~Gi~tn~~Fl~al~~~~~F~~g~~~T~~ 440 (645)
T COG4770 374 EGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFE-------------VEGIATNIPFLRALMADPRFRGGDLDTGF 440 (645)
T ss_pred cCCccccccchHHHHHhhcCCCHHHHHHHHHHHHHhhE-------------ecCccccHHHHHHHhcCcccccCCCccee
Confidence 2234433 45678899999999999999999998754 45667788888887766566665655554
Q ss_pred e
Q 013729 304 V 304 (437)
Q Consensus 304 ~ 304 (437)
+
T Consensus 441 i 441 (645)
T COG4770 441 I 441 (645)
T ss_pred e
Confidence 3
No 21
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-32 Score=265.09 Aligned_cols=286 Identities=20% Similarity=0.278 Sum_probs=230.6
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
..|.+++++.++++|||+|||++.+| ||+||+++++++|+++.++.+.. .++.+++|+||+.+++++++++.|
T Consensus 134 ~qs~e~~~~~a~eIgyPvMiKa~~GG-GGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD 212 (670)
T KOG0238|consen 134 DQSDEEAKKVAREIGYPVMIKATAGG-GGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGD 212 (670)
T ss_pred cccHHHHHHHHHhcCCcEEEEeccCC-CCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEec
Confidence 45789999999999999999999988 99999999999999998876531 135699999999999999999999
Q ss_pred CCCceEEee-eeeeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 77 RDKSILCYP-VVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 77 ~~G~~~~~~-~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
..|+.+.+. ..|++++.++....-.|++ ++++++.++-+.|.++++++||.|...+||++|+++.+||+|+|.|++-
T Consensus 213 ~hGnav~l~ERdCSvQRRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQV- 291 (670)
T KOG0238|consen 213 KHGNAVHLGERDCSVQRRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQV- 291 (670)
T ss_pred CCCcEEEecccccchhhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeee-
Confidence 999876554 4488888888777778887 9999999999999999999999999999999999999999999999986
Q ss_pred CCceeee-ccccHHHHHHHHHhCCCCCCCCCC---CCcEEEEEeeccCccCCCccccccchhhh--hcc----CCc--eE
Q 013729 155 GHHTIES-CYTSQFEQHMRAVVGLPLGDPSMK---TPAAIMYNLLGEAEGERGFYLAHQLIGKA--LSI----PGA--TV 222 (437)
Q Consensus 155 g~~~~~~-~~~~~~~~~~~~a~G~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~----pg~--~~ 222 (437)
.|..+++ +|+|++++++|.+.|.||+..... .+++..++++++. |...|-| +...+ ... |++ +.
T Consensus 292 EHPvTEmItg~DLVewqiRvA~ge~lp~~q~ei~l~GhafE~RiyAEd-p~~~f~P---~~G~L~~~~~p~~~~~vRvdt 367 (670)
T KOG0238|consen 292 EHPVTEMITGTDLVEWQIRVAAGEPLPLKQEEIPLNGHAFEARIYAED-PYKGFLP---SAGRLVYYSFPGHSPGVRVDT 367 (670)
T ss_pred cccchhhccchHHHHHHHHHhcCCCCCCCcceeeecceEEEEEEeecC-CcccCCC---CCccceeeccCCCCCCeeeec
Confidence 6777775 579999999999999999976553 4667889999874 3355665 22222 222 343 33
Q ss_pred EEeccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEE
Q 013729 223 HWYDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHE 300 (437)
Q Consensus 223 ~~~~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~ 300 (437)
.+..+.++.+ +..++.+++||.|+++|+.++.++++.. .|.|-+.+...+..+...-+..-.++.
T Consensus 368 gV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl~~aL~~~-------------~I~Gv~tnI~~l~~i~~~~~F~~g~V~ 434 (670)
T KOG0238|consen 368 GVRSGDEVSIHYDPMIAKLVVWGKDREEALNKLKDALDNY-------------VIRGVPTNIDFLRDIISHPEFAKGNVS 434 (670)
T ss_pred CcccCCcccccccchheeeeEecCCHHHHHHHHHHHHhhc-------------EEecCccchHHHHHHhcChhhhcCccc
Confidence 3444445544 4578999999999999999999999754 467888899999888766555555565
Q ss_pred EEEecCC
Q 013729 301 VRIVSAH 307 (437)
Q Consensus 301 ~~v~s~h 307 (437)
+.++.-|
T Consensus 435 T~fi~~~ 441 (670)
T KOG0238|consen 435 TKFIPEH 441 (670)
T ss_pred cccchhc
Confidence 5554433
No 22
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=6.3e-31 Score=273.29 Aligned_cols=286 Identities=17% Similarity=0.188 Sum_probs=218.3
Q ss_pred CCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEEEcC
Q 013729 4 NDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVRGR 77 (437)
Q Consensus 4 ~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~E~sv~~~~d~ 77 (437)
.+.+++.++++++|||+||||..++ ||+||++|+|++||.++++.+. ...+.++||+||++++|++++++.|.
T Consensus 139 ~~~~~~~~~~~~igyPvvvKP~~gg-Gg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~ 217 (478)
T PRK08463 139 ESMEEIKIFARKIGYPVILKASGGG-GGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDN 217 (478)
T ss_pred CCHHHHHHHHHHhCCCEEEEeCCCC-CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcC
Confidence 5789999999999999999998876 8999999999999999887531 12245999999998899999999988
Q ss_pred CCceEEeee-eeeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 78 DKSILCYPV-VETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 78 ~G~~~~~~~-~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
.|+++.+.. .+..++.+.......|++ +++++.++|++.+.+++++|||.|++++||+++++|++||+|||||++++.
T Consensus 218 ~g~v~~~~er~~s~~~~~~~~ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~y~iEiN~R~~~~~ 297 (478)
T PRK08463 218 YGNIIHLCERDCSIQRRHQKVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEH 297 (478)
T ss_pred CCCEEEEeccCCccccccCceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCCc
Confidence 787655432 123444444455567775 999999999999999999999999999999999878899999999999977
Q ss_pred CceeeeccccHHHHHHHHHhCCCCCCCCC---CCCcEEEEEeeccCccCCCccccccchhhhh--ccCCc--eEEEeccc
Q 013729 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKAL--SIPGA--TVHWYDKP 228 (437)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~a~G~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~pg~--~~~~~~~~ 228 (437)
+++...+|+|+++++++.++|.+++.... ..++++..+++++. +...|.|..+.+..+. .-|++ +...+.+.
T Consensus 298 ~~te~~tGidlv~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae~-~~~~f~p~~G~~~~~~~~~~~~vr~d~~~~~g~ 376 (478)
T PRK08463 298 GVTEEITGIDLIVRQIRIAAGEILDLEQSDIKPRGFAIEARITAEN-VWKNFIPSPGKITEYYPALGPSVRVDSHIYKDY 376 (478)
T ss_pred ceeeHhhCCCHHHHHHHHHcCCCCCCccccCCCceEEEEEEEeccC-cccCeecCCcEEEEEEcCCCCCeeEeccccCCC
Confidence 77777899999999999999999875321 12446666777653 4334555322222221 11232 22222222
Q ss_pred cccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe
Q 013729 229 EMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 304 (437)
Q Consensus 229 ~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~ 304 (437)
.+.+ ++++|+++++|+|+++|++++.++++++. |.|..++.+.+..+...-+.....+++++.
T Consensus 377 ~v~~~~d~~la~~i~~g~~r~~a~~~~~~al~~~~-------------i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~ 441 (478)
T PRK08463 377 TIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFV-------------IDGIRTTIPFLIAITKTREFRRGYFDTSYI 441 (478)
T ss_pred EeCcccccceeEEEEECCCHHHHHHHHHHHHhhcE-------------EeCccCCHHHHHHHhCCHHHhCCCccchhh
Confidence 3333 57899999999999999999999998753 577889999999988776666666666654
No 23
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.98 E-value=1.3e-30 Score=267.18 Aligned_cols=304 Identities=20% Similarity=0.293 Sum_probs=245.6
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+++.+|+.+++++.|||++||.+.+| |||||++|.++++|.+.++++.+ ..++++||+||+++++++|+++.|
T Consensus 144 ~~~~ee~~~fa~~~gyPvmiKA~~GG-GGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD 222 (1149)
T COG1038 144 IETIEEALEFAEEYGYPVMIKAAAGG-GGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGD 222 (1149)
T ss_pred cccHHHHHHHHHhcCCcEEEEEccCC-CccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeec
Confidence 56799999999999999999999988 99999999999999999987532 235699999999999999999999
Q ss_pred CCCceEE-eeeeeeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 77 RDKSILC-YPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 77 ~~G~~~~-~~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
..|++++ |...|++++.++....+.|+. |+++++++|++.+.++++..+|.|...+||+++.+|++||||+|||.+-
T Consensus 223 ~~GnvvHLfERDCSvQRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQV- 301 (1149)
T COG1038 223 THGNVVHLFERDCSVQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQV- 301 (1149)
T ss_pred CCCCEEEEeecccchhhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceee-
Confidence 9999765 556699999999888899997 9999999999999999999999999999999999999999999999986
Q ss_pred CCceee-eccccHHHHHHHHHhCCCCCCCCC---------CCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEE
Q 013729 155 GHHTIE-SCYTSQFEQHMRAVVGLPLGDPSM---------KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHW 224 (437)
Q Consensus 155 g~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~ 224 (437)
.|.+++ .+|+|.+..++..+.|..|+.... ..+.++.+++..+ +|...|.|+.+.+.....-.|.-+++
T Consensus 302 EHTiTE~vTgiDIV~aQi~ia~G~~l~~~e~glp~q~dI~~~G~AiQcRITTE-DP~n~F~PDtGrI~aYRs~gGfGVRL 380 (1149)
T COG1038 302 EHTITEEITGIDIVKAQIHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTE-DPENGFIPDTGRITAYRSAGGFGVRL 380 (1149)
T ss_pred EEeeeeeeechhHHHHHHHHhccCccCCcccCCCccccccccceEEEEEeecc-CcccCCCCCCceEEEEecCCCceEEe
Confidence 566555 568999999999999999884221 1356788898876 56677888554444333323445555
Q ss_pred ecc-----ccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCC
Q 013729 225 YDK-----PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSV 297 (437)
Q Consensus 225 ~~~-----~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~ 297 (437)
-++ .++.| ++.+-.+.+||.++++|.+|+.+++.++++ .|-.++.++++.+...-+...-
T Consensus 381 D~Gn~~~GavItpyyDslLVK~t~~~~t~e~a~~km~RaL~EfrI-------------rGVkTNi~FL~~vl~h~~F~~g 447 (1149)
T COG1038 381 DGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRI-------------RGVKTNIPFLEAVLNHPDFRSG 447 (1149)
T ss_pred cCCcccccceeccccccceeeEeecCCCHHHHHHHHHHHHHHhee-------------cceecCcHHHHHHhcCcccccC
Confidence 433 33444 466788999999999999999999998763 5557889999999888777777
Q ss_pred cEEEEEecCCCChhHHHHhHhhhhhcCCe
Q 013729 298 PHEVRIVSAHRTPDLMFSYASSAHERGIE 326 (437)
Q Consensus 298 ~~~~~v~s~hr~p~~~~~~~~~~~~~g~~ 326 (437)
.|.++++ .-||+ +..+.+ ..++|.+
T Consensus 448 ~y~T~FI--d~tPe-Lf~~~~-~~Dr~tK 472 (1149)
T COG1038 448 RYTTSFI--DTTPE-LFQFPK-SQDRGTK 472 (1149)
T ss_pred cceeeec--cCCHH-Hhcccc-ccchhHH
Confidence 8988875 56676 444332 1445555
No 24
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.98 E-value=3.7e-31 Score=236.78 Aligned_cols=159 Identities=43% Similarity=0.758 Sum_probs=146.3
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCce
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~ 81 (437)
.+.|.+|+.++++++|||+|+|+..+||.|+|..++++.+|+.++++.+...+ +++|+||+..+|+|+.+.++.+|++
T Consensus 13 ~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~--~ilE~~v~f~~EiSvivaR~~~G~~ 90 (172)
T PF02222_consen 13 TIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGP--CILEEFVPFDREISVIVARDQDGEI 90 (172)
T ss_dssp EESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSC--EEEEE---ESEEEEEEEEEETTSEE
T ss_pred EECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCc--EEEEeccCCcEEEEEEEEEcCCCCE
Confidence 47899999999999999999999899999999999999999999999986656 9999999999999999999999999
Q ss_pred EEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCc-EEEEEEcCCCCCCCCceee
Q 013729 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQ-ILLNEVAPRPHNSGHHTIE 160 (437)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~-~~viEiNpR~~~sg~~~~~ 160 (437)
.+||+.++.+++|.+..++.|+.+++++.+++++++.+++++|+|.|++.||||+++||+ +||+|+.|||++|||||++
T Consensus 91 ~~yp~~en~~~~~il~~s~~Pa~i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~~g~~v~vNEiaPRpHnSGh~Ti~ 170 (172)
T PF02222_consen 91 RFYPPVENVHRDGILHESIAPARISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTKDGDEVLVNEIAPRPHNSGHWTIE 170 (172)
T ss_dssp EEEEEEEEEEETTEEEEEEESCSS-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTSTEEEEEEEESS--GGGGGHHH
T ss_pred EEEcCceEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEecCCCEEEEEeccCCccCcccEeee
Confidence 999999999999999999999999999999999999999999999999999999999997 9999999999999999987
Q ss_pred ec
Q 013729 161 SC 162 (437)
Q Consensus 161 ~~ 162 (437)
+|
T Consensus 171 ~c 172 (172)
T PF02222_consen 171 AC 172 (172)
T ss_dssp HB
T ss_pred cC
Confidence 65
No 25
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.97 E-value=4.5e-30 Score=259.54 Aligned_cols=285 Identities=21% Similarity=0.277 Sum_probs=224.6
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+.+.+|+.+.++++||||||||+.+| ||+||++|++.+||.+++..+.+ .++.+++||||++.++++++++.|
T Consensus 138 ~~~~ee~~~~a~~iGyPVivKa~~Gg-Gg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD 216 (449)
T COG0439 138 VADNEEALAIAEEIGYPVIVKAAAGG-GGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGD 216 (449)
T ss_pred cCCHHHHHHHHHHcCCCEEEEECCCC-CcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEc
Confidence 56789999999999999999999887 99999999999999999986532 124599999999999999999999
Q ss_pred CCCceEEeeee-eeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
+.|.++.+... +.+++.+.......|++ ++++.++++.+.+.++++.+||.|..++||+++.+|++||+|+|+|+++-
T Consensus 217 ~~g~~i~l~eRdcsiqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN~Rlqve 296 (449)
T COG0439 217 GHGNVIHLGERDCSIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQVE 296 (449)
T ss_pred CcccEEEEEeccCCCcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCEEEEEEecccccC
Confidence 99988777665 47777777777788887 89999999999999999999999999999999876889999999999984
Q ss_pred CCceeeeccccHHHHHHHHHhCCCCCCCCC--C-CCcEEEEEeeccCccCCCccccccchhhhhccCC---c--eEEEec
Q 013729 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPG---A--TVHWYD 226 (437)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~a~G~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg---~--~~~~~~ 226 (437)
.+.+...+|+|+.+++++.++|.+++.... . .++++.++++.+. +...|.|.. +.-.....|+ + +...+.
T Consensus 297 h~vte~vtGiDlv~~qi~ia~ge~l~~~q~~~~~~g~aie~Ri~aed-p~~~f~psp-G~i~~~~~P~g~gvr~d~~~~~ 374 (449)
T COG0439 297 HPVTEMVTGIDLVKEQIRIAAGEPLSLKQEDIKFRGHAIECRINAED-PLGNFLPSP-GKITRYAPPGGPGVRVDSGVYD 374 (449)
T ss_pred ccceehhhhhhHHHHHHHHHcCCCCCCCCCcccccceeeeceeeccC-CCCCcCCCC-CeeeeecCCCCCceEEEeeccc
Confidence 444455678999999999999998887552 2 2467778888763 433466532 2222234453 2 334444
Q ss_pred cccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013729 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 303 (437)
Q Consensus 227 ~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v 303 (437)
+..+.+ .+.+|+++++|.+.++|+.++.+++.++. +.|-.+..+...++.+..+..--++++.+
T Consensus 375 ~~~i~~~yds~i~k~i~~~~~r~~ai~~~~~aL~e~~-------------i~G~~t~~~~~~~~~~~~~~~~g~~~t~~ 440 (449)
T COG0439 375 GYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELV-------------IDGIKTNIPLLQEILRDPDFLAGDLDTHF 440 (449)
T ss_pred CcccCcchhhheeEEEEecCChHHHHHHHHHHHHheE-------------ecCccCChHHHHHHhcChHhhcCCcchhh
Confidence 444444 58899999999999999999999998754 45556677888887776665544454443
No 26
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.97 E-value=8.2e-30 Score=264.00 Aligned_cols=286 Identities=20% Similarity=0.272 Sum_probs=211.3
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+.+.+|+.++++++|||+||||..++ ||+|+++|+|.+||.++++.+.. ..+.+++||||+|++|+++++++
T Consensus 137 ~v~~~~~~~~~~~~~g~PvvvKP~~g~-gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~ 215 (451)
T PRK08591 137 PVDDEEEALAIAKEIGYPVIIKATAGG-GGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLA 215 (451)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEECCCC-CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEE
Confidence 357899999999999999999998876 89999999999999999886421 12459999999987899999999
Q ss_pred cCCCceEEeeee-eeEEecCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 76 GRDKSILCYPVV-ETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 76 d~~G~~~~~~~~-e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
|++|++..+... +...+.+.......|+ .++++..+++.+++.+++++||+.|++|+||+++++|++||+|||||+++
T Consensus 216 d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~viEINpR~~~ 295 (451)
T PRK08591 216 DGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQV 295 (451)
T ss_pred cCCCCEEEEecccccceecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEEEEEEECCCCc
Confidence 888887655322 1233333333444566 49999999999999999999999999999999987888999999999998
Q ss_pred CCCceeeeccccHHHHHHHHHhCCCCCCCCCC---CCcEEEEEeeccCccCCCccccccchhhhhccC---CceEE--Ee
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSMK---TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP---GATVH--WY 225 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p---g~~~~--~~ 225 (437)
+.+++..++|+|+++.+++.++|.|++..... .++++..++.++. +...+.|....+.. ...| ++.+. ..
T Consensus 296 ~~~~~~~~~Gvdl~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~a~~-~~~~~~p~~g~~~~-~~~~~~~~v~~~~~~~ 373 (451)
T PRK08591 296 EHPVTEMITGVDLVKEQIRIAAGEPLSIKQEDIVFRGHAIECRINAED-PAKNFMPSPGKITR-YHPPGGPGVRVDSAVY 373 (451)
T ss_pred cchhhhhhhCCCHHHHHHHHHCCCCCCCcccccCcCceEEEEEEeeec-CccCcccCCCEeeE-EEcCCCCCeeeccccc
Confidence 65666678999999999999999998754321 1234444554432 33334432111211 1223 33222 21
Q ss_pred ccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013729 226 DKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 303 (437)
Q Consensus 226 ~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v 303 (437)
.+..+.+ ++++|+|+++|+|.+||++++.++++.++ |.|..++.+.++.+...-+...-.+++++
T Consensus 374 ~g~~v~~~~~~~lg~vi~~g~~~~~~~~~~~~~l~~~~-------------i~g~~tn~~~~~~~~~~~~f~~~~~~t~~ 440 (451)
T PRK08591 374 TGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFV-------------IDGIKTTIPLHLRLLNDPNFQAGDYNIHY 440 (451)
T ss_pred CCCCcCccccCcceEEEEEcCCHHHHHHHHHHHHhhCE-------------EECCCCCHHHHHHHhcCHhhhCCCcccHH
Confidence 1222222 46899999999999999999999998765 46678999999998877555555555553
No 27
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.97 E-value=4.7e-30 Score=285.94 Aligned_cols=289 Identities=17% Similarity=0.235 Sum_probs=230.8
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+.+.+++.++++++|||+||||+.+| ||+||++|++.+||.++++.+.. ..+.++||+||++++|+++++++|
T Consensus 138 v~~~eea~~~ae~iGyPvIVKP~~GG-GGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD 216 (1143)
T TIGR01235 138 PETMEEVLDFAAAIGYPVIIKASWGG-GGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGD 216 (1143)
T ss_pred cCCHHHHHHHHHHcCCCEEEEECCCC-CCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEe
Confidence 56889999999999999999998877 89999999999999998876521 124599999999889999999999
Q ss_pred CCCceEE-eeeeeeEEecCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 77 RDKSILC-YPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 77 ~~G~~~~-~~~~e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.+|+++. +...+.+++.+.......|+ .++++..++|.+++.++++++||.|++++||+++++|++||+|||||++++
T Consensus 217 ~~G~vv~l~eRdcsvqrr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg~~yfIEVNPRiqve 296 (1143)
T TIGR01235 217 KHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVE 296 (1143)
T ss_pred CCCCEEEEEeccccccccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCCcEEEEEeecCCCcc
Confidence 8888764 33335555555555566787 499999999999999999999999999999999988899999999999986
Q ss_pred CCceeeeccccHHHHHHHHHhCCCCCC--C----CC---CCCcEEEEEeeccCccCCCccccccchhhhhccCC-ceEEE
Q 013729 155 GHHTIESCYTSQFEQHMRAVVGLPLGD--P----SM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPG-ATVHW 224 (437)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~a~G~~l~~--~----~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg-~~~~~ 224 (437)
.+++...+|+|+.+.+++.+.|.+++. . +. ..++++.++++++ +|...|.|..+.+.. .+.|+ ..+++
T Consensus 297 h~vTe~vtGiDlv~~qi~iA~G~~L~~~~~~~~~q~~~~~~g~ai~~ri~~e-dp~~~f~p~~g~i~~-~~~~~g~gvr~ 374 (1143)
T TIGR01235 297 HTVTEEITGIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVTTE-DPANNFQPDTGRIEA-YRSAGGFGIRL 374 (1143)
T ss_pred hhHHHHHhCcHHHHHHHHHHcCCCCCccccCCCcccccCCCcEEEEEEEeee-cCCCCcccCCcEeeE-EecCCCCCeEe
Confidence 566666889999999999999999982 1 11 2356788998876 565668875544443 33442 22322
Q ss_pred -----eccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCC
Q 013729 225 -----YDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSV 297 (437)
Q Consensus 225 -----~~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~ 297 (437)
|.+..+.+ ++-++.++++|.|+++|++++.+++++++ |.|-.++.++++.+...-+....
T Consensus 375 d~~~~~~g~~v~~~yds~~~k~~~~~~~~~~a~~~~~~al~e~~-------------i~gv~tn~~~l~~~l~~~~f~~~ 441 (1143)
T TIGR01235 375 DGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREFR-------------IRGVKTNIPFLENVLGHPKFLDG 441 (1143)
T ss_pred cccccCCCCCcCCcccchhhhheeeCCCHHHHHHHHHHHHhhcE-------------EECccCCHHHHHHHhcCHhhcCC
Confidence 23345554 56679999999999999999999998764 46778999999999988888888
Q ss_pred cEEEEEecCC
Q 013729 298 PHEVRIVSAH 307 (437)
Q Consensus 298 ~~~~~v~s~h 307 (437)
.++++++.-|
T Consensus 442 ~~~t~~~~~~ 451 (1143)
T TIGR01235 442 SYDTRFIDTT 451 (1143)
T ss_pred CccchhhhcC
Confidence 8888876433
No 28
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=270.58 Aligned_cols=332 Identities=18% Similarity=0.212 Sum_probs=264.8
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc----CCCCcEEEeeccCCCeEEEEEEEEcC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG----GFDRGLYVEKWAPFVKELAVIVVRGR 77 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~----~~~~~~lvEe~I~g~~E~sv~~~~d~ 77 (437)
.++|.+|+.+|++++||||+|+|++-- +|..|.++++++||+.+++.+. ++| +++.+||++++|++++++. .
T Consensus 1053 elt~~~eA~~F~~~VgYP~lvRPSYVL-SGaAMnv~~~~~dl~~~L~~A~~vs~dhP--VVisKfie~AkEidvDAVa-~ 1128 (1435)
T KOG0370|consen 1053 ELTSLEEAKKFAEKVGYPVLVRPSYVL-SGAAMNVVYSESDLKSYLEQASAVSPDHP--VVISKFIEGAKEIDVDAVA-S 1128 (1435)
T ss_pred hhccHHHHHHHHHhcCCceEeccccee-cchhhhhhhcHHHHHHHHHHHhhcCCCCC--EEhHHhhcccceechhhhc-c
Confidence 357999999999999999999999843 5899999999999999998863 456 9999999999999999986 5
Q ss_pred CCceEEeeeeeeEEec----CceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 78 DKSILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 78 ~G~~~~~~~~e~~~~~----g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
+|+++...+.||++.. |+.+...+|..++++..+++++++.++++++.+.|++|+||+.. ++++.+||+|-|.++
T Consensus 1129 ~G~~~~haiSEHvEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k-~n~lkVIECN~RaSR 1207 (1435)
T KOG0370|consen 1129 DGKVLVHAISEHVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAK-DNELKVIECNVRASR 1207 (1435)
T ss_pred CCeEEEEehhhhhhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEec-CCeEEEEEeeeeeec
Confidence 8999999999999875 45566677888999999999999999999999999999999885 668999999999999
Q ss_pred CCCceeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCC
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQ 233 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~ 233 (437)
|.+|.++..|+|+++...|+++|.|++......+..+ +.+-|+.+|. ++.|.|+.+ | .+ |
T Consensus 1208 SFPFvSKtlgvdfi~~At~~i~g~~~~~~~~~~~dyV-----~vKvPqFSf~----------RLagADp~L-g-vE---M 1267 (1435)
T KOG0370|consen 1208 SFPFVSKTLGVDFIALATRAIMGVPVPPDLLLHPDYV-----AVKVPQFSFS----------RLAGADPVL-G-VE---M 1267 (1435)
T ss_pred cccceehhcCchHHHHHHHHHhCCCCCCccccCCCeE-----EEEccccccc----------cccCCCcee-e-eE---e
Confidence 9999999999999999999999998887654333222 2223333333 567888777 3 45 5
Q ss_pred ceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHH
Q 013729 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLM 313 (437)
Q Consensus 234 ~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~ 313 (437)
.++|+|-++|.+.-||.-++....+ +++ +.+.+.|..|++ ++.+...++.|.++||++.++ .+ |
T Consensus 1268 aSTGEVAcFG~~~~eaylkam~sTg-F~i-----Pk~~i~i~ig~~--k~ell~~~~~l~~~gy~lyat----~~----t 1331 (1435)
T KOG0370|consen 1268 ASTGEVACFGEDRYEAYLKAMLSTG-FKI-----PKKNILISIGSY--KPELLPSARDLAKLGYKLYAT----NG----T 1331 (1435)
T ss_pred ccccceeecccchHHHHHHHHHhcC-ccc-----cCCCeEEEeccc--hHHHHHHHHHHHhcCceeEEe----cc----c
Confidence 6899999999999999999998887 443 334554666655 999999999999999999998 66 4
Q ss_pred HHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC-CCCCCChhhHHHhhhCCCCCceEE
Q 013729 314 FSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVAT 380 (437)
Q Consensus 314 ~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~-~~~~~g~~~l~~~~~~~~gvp~~t 380 (437)
..|+. +.+-.++ ..-+-...|...++.+....|||.|-. +-...|+. .|++++..+||..|
T Consensus 1332 ~d~~~--~~~~~~~--~~~~~~~~l~~~~~~~~i~lvinlpr~~~~~~~~Y~--~RR~AvD~~ipLit 1393 (1435)
T KOG0370|consen 1332 ADFYL--ENKYAEV--SEEPTNDKLRELLANYNIDLVINLPRPSSFVDHGYK--TRRLAVDFSIPLIT 1393 (1435)
T ss_pred hhhhh--ccCChhh--ccCCChHHHHHHHhcCceeEEEecCCcccccccCce--eeeeecccCCceee
Confidence 55442 1122222 111112347777888999999999963 22234555 79999999999885
No 29
>PRK08462 biotin carboxylase; Validated
Probab=99.97 E-value=1.4e-29 Score=261.83 Aligned_cols=285 Identities=18% Similarity=0.231 Sum_probs=208.8
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+.+.+++.++++++|||+||||..++ ||+|+++|+|++||.+++..+. ...+.+++|+||+|++|++++++.+
T Consensus 140 ~~~~~~~~~~~~~~g~PvvvKP~~g~-gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~ 218 (445)
T PRK08462 140 LKSYEEAKKIAKEIGYPVILKAAAGG-GGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGD 218 (445)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeCCCC-CCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEEC
Confidence 56889999999999999999998776 8999999999999999886431 1124599999999879999999998
Q ss_pred CCCceEEeeee-eeEEecCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 77 RDKSILCYPVV-ETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.+|+++.++.. +...+.+.......|+ .++++..+++.+++.+++++||+.|++++||+++++|++||+|||||++++
T Consensus 219 ~~g~~~~~g~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 298 (445)
T PRK08462 219 KHGNVIHVGERDCSLQRRHQKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLDFYFMEMNTRLQVE 298 (445)
T ss_pred CCCCEEEEEeccccceecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCCCEEEEEEECCcCcC
Confidence 88887766432 2223323223334566 489999999999999999999999999999999987889999999999874
Q ss_pred CCceeeeccccHHHHHHHHHhCCCCCCCCCC--CCcEEEEEeeccCccCCCccccccchhhhhccCC-ceEEEec----c
Q 013729 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSMK--TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPG-ATVHWYD----K 227 (437)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg-~~~~~~~----~ 227 (437)
..++..++|+|+++.+++.++|.+++..... ..+++..+++++. +. .|.|....+..+ ..|+ ..+++.. +
T Consensus 299 ~~~~~~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~~a~~~~~~~~~-~~-~~~p~~G~l~~~-~~~~~~~~r~~~~~~~g 375 (445)
T PRK08462 299 HTVSEMVSGLDLIEWMIKIAEGEELPSQESIKLKGHAIECRITAED-PK-KFYPSPGKITKW-IAPGGRNVRMDSHAYAG 375 (445)
T ss_pred cceehhhhCCCHHHHHHHHHCCCCcccccccCCceeEEEEEeccCC-CC-ceecccCEEeEE-EcCCCCCEEEccCcCCC
Confidence 4444567899999999999999998754321 2334455665542 21 233321122221 1222 1222211 1
Q ss_pred ccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe
Q 013729 228 PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 304 (437)
Q Consensus 228 ~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~ 304 (437)
..+.+ .+++|+|+++|+|.+||+.++.++++.+. +.|..++++.++.+...-+.....+++++.
T Consensus 376 ~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~-------------i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (445)
T PRK08462 376 YVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFK-------------VEGIKTTIPFHLEMMENADFINNKYDTKYL 441 (445)
T ss_pred CEeChhhccCccEEEEEcCCHHHHHHHHHHHHHhcE-------------EECccCCHHHHHHHhcChhhcCCceechhh
Confidence 11111 46899999999999999999999998764 467789999999988776665656666643
No 30
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.97 E-value=3e-30 Score=239.16 Aligned_cols=178 Identities=24% Similarity=0.318 Sum_probs=143.8
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
++|.+++.++++++|||++|||++++ ||+||.+|+|.+||.++++.... ....+++|+|+++.+|+++++++|
T Consensus 24 ~~~~eea~~~a~~iGyPVliKas~gg-GG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D 102 (211)
T PF02786_consen 24 ISSVEEALEFAEEIGYPVLIKASAGG-GGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRD 102 (211)
T ss_dssp BSSHHHHHHHHHHH-SSEEEEETTSS-TTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhcCCceEEeecccc-cccccccccchhhhhhhhhhccccCccccccceEEEeeehhhhhhhhhhhhhc
Confidence 58999999999999999999999887 99999999999999999976421 124599999999989999999999
Q ss_pred CCCceEEeeeeeeEE-ecCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC-CCcEEEEEEcCCCCC
Q 013729 77 RDKSILCYPVVETIH-KENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHN 153 (437)
Q Consensus 77 ~~G~~~~~~~~e~~~-~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~-dg~~~viEiNpR~~~ 153 (437)
+.|++++....+... +.........|+ .|+++.+++|++++.++++++||.|++|+||.+++ ++++||+|+|||+++
T Consensus 103 ~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR~~~ 182 (211)
T PF02786_consen 103 GKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPRLQR 182 (211)
T ss_dssp TTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS--T
T ss_pred cccceeeeeeeccccccccccceeEeeccccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCCCCC
Confidence 999888777665543 332334555666 49999999999999999999999999999999997 789999999999999
Q ss_pred CCCceeeeccccHHHHHHHHHhCCCCCC
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGLPLGD 181 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~~l~~ 181 (437)
+..++.+.+|+|+.+.+++.++|.+|++
T Consensus 183 ~~p~~e~~tg~dlv~~~~~ia~G~~L~e 210 (211)
T PF02786_consen 183 EHPVTEKVTGYDLVRVQIRIALGEPLDE 210 (211)
T ss_dssp THHHHHHHHT--HHHHHHHHHTT--GSC
T ss_pred cchHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence 8788888999999999999999999875
No 31
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.97 E-value=9.8e-30 Score=284.68 Aligned_cols=295 Identities=20% Similarity=0.299 Sum_probs=228.8
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+.|.+|+.++++++|||+||||..++ ||+||++|++++||.++++.+.. ..+.+++|+||+|.+|++++++.|
T Consensus 142 v~s~eea~~~a~~iGyPvVVKP~~Gg-GGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D 220 (1146)
T PRK12999 142 IDDIEEALEFAEEIGYPIMLKASAGG-GGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGD 220 (1146)
T ss_pred CCCHHHHHHHHHHhCCCEEEEECCCC-CCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEE
Confidence 67899999999999999999998877 99999999999999998876421 124599999999889999999999
Q ss_pred CCCceEEe-eeeeeEEecCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 77 RDKSILCY-PVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 77 ~~G~~~~~-~~~e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.+|+++.+ ...+++++.+.......|+ .++++..+++++++.++++++||.|++++||+++++|.+||+|||||++++
T Consensus 221 ~~G~vv~l~erdcsvqrr~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~dg~~yfIEINpRlqve 300 (1146)
T PRK12999 221 KHGNVVHLYERDCSVQRRHQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVE 300 (1146)
T ss_pred CCCCEEEEEccccceeecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECCCCEEEEEEECCCCCc
Confidence 88887654 3335566666555556777 499999999999999999999999999999999988789999999999975
Q ss_pred CCceeeeccccHHHHHHHHHhCCCCCCCCC--------C-CCcEEEEEeeccCccCCCccccccchhhhhccCCc-eEEE
Q 013729 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM--------K-TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGA-TVHW 224 (437)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~a~G~~l~~~~~--------~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~-~~~~ 224 (437)
.+++...+|+|+++.+++.++|.+++.... . .++++.++++++ +|...|.|..+.+.. .+.|+. .+.+
T Consensus 301 h~vte~~tGvDlv~~~iriA~G~~l~~~~~~~~~q~~~~~~g~Ai~~ri~ae-dp~~~f~P~~G~i~~-~~~p~~~~vr~ 378 (1146)
T PRK12999 301 HTVTEEVTGIDIVQSQILIAEGATLHDLEIGIPSQEDIRLRGYAIQCRITTE-DPANNFMPDTGRITA-YRSPGGFGVRL 378 (1146)
T ss_pred chHHHHHhCcCHHHHHHHHHCCCCCCccccccccccccccceeEEEEEEEee-cCccCccCCCcEEEE-EEcCCCCcEEe
Confidence 445567789999999999999999876321 1 244667788876 454456664333333 233432 2333
Q ss_pred e-----ccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCC
Q 013729 225 Y-----DKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSV 297 (437)
Q Consensus 225 ~-----~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~ 297 (437)
. .+..+.+ ++.+++|+++|.|+++|++++.+++++++ |.|..++.+++..+...-+....
T Consensus 379 d~~~~~~g~~v~~~~Ds~l~kvi~~g~~~~~A~~~~~~aL~~~~-------------i~gv~tn~~~l~~~~~~~~f~~~ 445 (1146)
T PRK12999 379 DGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFR-------------IRGVKTNIPFLENVLKHPDFRAG 445 (1146)
T ss_pred eccccCCCCeeCCCccCCceEEEEEcCCHHHHHHHHHHHHhhcE-------------EecccCcHHHHHHHhCCHhhcCC
Confidence 2 2233333 45678999999999999999999998865 35678899999999888777777
Q ss_pred cEEEEEecCCCChhHHHHh
Q 013729 298 PHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 298 ~~~~~v~s~hr~p~~~~~~ 316 (437)
.++++++.-| |+ +.++
T Consensus 446 ~~~t~~~~~~--~~-l~~~ 461 (1146)
T PRK12999 446 DYTTSFIDET--PE-LFDF 461 (1146)
T ss_pred CccchhhhcC--hh-hhhC
Confidence 8888876433 54 4444
No 32
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.97 E-value=1e-29 Score=285.69 Aligned_cols=244 Identities=19% Similarity=0.199 Sum_probs=202.4
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC--CCcEEEeeccCCCeEEEEEEEEcCCC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF--DRGLYVEKWAPFVKELAVIVVRGRDK 79 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~--~~~~lvEe~I~g~~E~sv~~~~d~~G 79 (437)
.+++.+|+.++++++|||+||||+.+ +||+|+.+|+|++||.++++..... .+++|||+||+|.+|+++++++|.+|
T Consensus 148 ~v~s~ee~~~~~~~igyPvVVKP~~g-~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~~E~sv~v~rD~~g 226 (1068)
T PRK12815 148 IVTSVEEALAFAEKIGFPIIVRPAYT-LGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNG 226 (1068)
T ss_pred eeCCHHHHHHHHHHcCCCEEEEECcC-CCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCCeEEEEEEEEcCCC
Confidence 46789999999999999999999765 4899999999999999999765432 24699999999888999999999999
Q ss_pred ceEEeeeeeeEEecCce---EEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCC-CcEEEEEEcCCCCCC
Q 013729 80 SILCYPVVETIHKENIC---HIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHNS 154 (437)
Q Consensus 80 ~~~~~~~~e~~~~~g~~---~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~d-g~~~viEiNpR~~~s 154 (437)
++..++..+++...|.. ...+.|+ .++++..+++++++.+++++||+.|++|+||+++++ |++||+|||||++++
T Consensus 227 ~~~~~~~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR~~~s 306 (1068)
T PRK12815 227 NCITVCNMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVSRS 306 (1068)
T ss_pred CEEEEEeceecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecCcccc
Confidence 98888877766544432 3445677 589999999999999999999999999999999875 789999999999999
Q ss_pred CCceeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhh-hhccCCceEEEeccccccCC
Q 013729 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEMRQQ 233 (437)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~pg~~~~~~~~~~~~~~ 233 (437)
++++..++|+++.+..++.++|.+|++..... ++... ..++| .++. +.+.|.|++++|++.+.+++
T Consensus 307 ~~l~~~atG~pl~~~~~~~alG~~l~ei~~~i--------~g~~~--a~~ep---~~d~~~~k~p~~~f~~y~~~~~~~g 373 (1068)
T PRK12815 307 SALASKATGYPIAKIAAKLAVGYTLNELKNPV--------TGLTY--ASFEP---ALDYVVVKFPRWPFDKFGYADRTLG 373 (1068)
T ss_pred hhhhhHhhCCcHHHHHHHHHcCCChHHhcCCc--------cCCcc--cccCC---ccceEEEEeccCccccccCcccccc
Confidence 99999999999999999999999988765321 11100 12333 3443 45689999999998777777
Q ss_pred cee---EEEEEEcCCHHHHHHHHHHhhcc
Q 013729 234 RKM---GHITIVGSSMGLVESRLNSLLKE 259 (437)
Q Consensus 234 ~~~---G~Vi~~G~s~~eA~~k~~~a~~~ 259 (437)
++| |||+++|+|++||+.|+.+++..
T Consensus 374 ~kmks~G~v~~ig~~~eea~~ka~~~~~~ 402 (1068)
T PRK12815 374 TQMKATGEVMAIGRNFESAFQKALRSLEI 402 (1068)
T ss_pred ceecccceEEEecCCHHHHHHHHHHhhcC
Confidence 666 99999999999999999999863
No 33
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.97 E-value=3.3e-29 Score=281.34 Aligned_cols=243 Identities=20% Similarity=0.225 Sum_probs=199.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCC--CcEEEeeccCCCeEEEEEEEEcCCC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFD--RGLYVEKWAPFVKELAVIVVRGRDK 79 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~--~~~lvEe~I~g~~E~sv~~~~d~~G 79 (437)
.+++.+|+.++++++|||+||||+.++ ||+|+.+++|++||.+++......+ +.+||||||+|.+|+++++++|.+|
T Consensus 147 ~v~s~~e~~~~~~~igyPvIVKP~~g~-gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~~Eiev~v~rd~~g 225 (1050)
T TIGR01369 147 IAHSVEEALAAAKEIGYPVIVRPAFTL-GGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGWKEIEYEVMRDSND 225 (1050)
T ss_pred ecCCHHHHHHHHHHhCCCeEEECCCCC-CCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCceEEEEEEEEeCCC
Confidence 467899999999999999999997654 9999999999999999877654322 4699999999889999999999889
Q ss_pred ceEEeeeeeeEEe----cCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCC-CcEEEEEEcCCCCC
Q 013729 80 SILCYPVVETIHK----ENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHN 153 (437)
Q Consensus 80 ~~~~~~~~e~~~~----~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~d-g~~~viEiNpR~~~ 153 (437)
++..++..+++.. .|. ...+.|+. ++++..+++++++.+++++||+.|.+|+||+++++ |++||+|||||+++
T Consensus 226 ~~~~~~~~e~~~p~gvh~g~-~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g~~~viEiNPR~~~ 304 (1050)
T TIGR01369 226 NCITVCNMENFDPMGVHTGD-SIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRVSR 304 (1050)
T ss_pred CEEEEeeceeccCcceecCc-eEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCCcEEEEEeecCcCc
Confidence 8887776666522 233 24457875 89999999999999999999999999999999864 78999999999999
Q ss_pred CCCceeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhh-hhccCCceEEEeccccccC
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEMRQ 232 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~pg~~~~~~~~~~~~~ 232 (437)
+++.++.++|+++.+..++.++|+++...... +++. .+ ..|+| .++. ..+.|.|.+++|++.+.++
T Consensus 305 s~~l~s~atG~pl~~~~~~~alG~~l~~~~n~--------i~g~-~~-~~~~p---~~~~~~~k~p~~~~~~~~~~~~~~ 371 (1050)
T TIGR01369 305 SSALASKATGYPIAKVAAKLAVGYGLDELKNP--------VTGT-TP-ASFEP---SLDYVVVKIPRWDFDKFAGVDRKL 371 (1050)
T ss_pred chhhhhHHhCCCHHHHHHHHHcCCCchhhcCC--------CcCc-Cc-cccCc---CCCeEEEEEEeCCCCCCCcccCCc
Confidence 99988899999999999999999998765431 1221 11 12433 4444 3467999999998766666
Q ss_pred Cce---eEEEEEEcCCHHHHHHHHHHhhcc
Q 013729 233 QRK---MGHITIVGSSMGLVESRLNSLLKE 259 (437)
Q Consensus 233 ~~~---~G~Vi~~G~s~~eA~~k~~~a~~~ 259 (437)
++. +|||+++|+|++||+.|+.+++..
T Consensus 372 ~~~~k~~G~v~~~g~~~~ea~~ka~~~~~~ 401 (1050)
T TIGR01369 372 GTQMKSVGEVMAIGRTFEEALQKALRSLEI 401 (1050)
T ss_pred CcccceeeEEEEECCCHHHHHHHHHHHhcc
Confidence 555 999999999999999999999864
No 34
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.97 E-value=5.6e-29 Score=280.39 Aligned_cols=241 Identities=18% Similarity=0.231 Sum_probs=199.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~d~~G 79 (437)
.+++.+|+.++++++|||+||||+.+ +||+|+.+|+|++||.++++.... ....++||+||+|.+|+++.+++|.+|
T Consensus 148 ~v~s~~e~~~~~~~ig~PvVVKP~~g-~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G~~Eisv~v~rd~~g 226 (1066)
T PRK05294 148 IAHSMEEALEVAEEIGYPVIIRPSFT-LGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLGWKEYEYEVMRDKND 226 (1066)
T ss_pred eeCCHHHHHHHHHHcCCCeEEEcCCC-CCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccCceEEEEEEEEcCCC
Confidence 46789999999999999999999764 599999999999999999875432 224599999999888999999999999
Q ss_pred ceEEeeeeeeEE----ecCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCc-eEEEEEEEEeC-CCcEEEEEEcCCCC
Q 013729 80 SILCYPVVETIH----KENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGA-GIFAVELFWTN-NGQILLNEVAPRPH 152 (437)
Q Consensus 80 ~~~~~~~~e~~~----~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~-G~~~ve~~~~~-dg~~~viEiNpR~~ 152 (437)
++..++..++.. ..|. ...+.|+ .++++..+++++++.+++++||+. |++|+||++++ +|++||+|||||++
T Consensus 227 ~~~~~~~~e~~dp~gih~g~-~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiNPR~~ 305 (1066)
T PRK05294 227 NCIIVCSIENIDPMGVHTGD-SITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVS 305 (1066)
T ss_pred CEEEEeeeeeccccceecCC-eEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEeecCCC
Confidence 988887776652 1233 2445787 599999999999999999999999 99999999984 67899999999999
Q ss_pred CCCCceeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEee-ccCccCCCccccccchhh-hhccCCceEEEeccccc
Q 013729 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLL-GEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEM 230 (437)
Q Consensus 153 ~sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~-~~~~pg~~~~~~~~~~~ 230 (437)
+++.+++.++|.++.+..++.++|.++..... .+ +.. . ..++| .++. +.+.|+|++++|++.+.
T Consensus 306 ~s~~~~s~~tG~pl~~~~~~~~lG~~l~~m~n---------~~~g~~-~-~~~~p---~~~~v~~k~p~~~~~~y~k~~~ 371 (1066)
T PRK05294 306 RSSALASKATGYPIAKVAAKLAVGYTLDEIKN---------DITGKT-P-ASFEP---SLDYVVTKIPRFAFEKFPGADR 371 (1066)
T ss_pred cceeeeeHhhCCCHHHHHHHHHcCCChHHhcC---------cccCCC-c-ccccc---cCCeEEEEccCCccccccCCCC
Confidence 99888888899999999999999998865432 22 211 0 12333 4444 45689999999998777
Q ss_pred cCC---ceeEEEEEEcCCHHHHHHHHHHhhc
Q 013729 231 RQQ---RKMGHITIVGSSMGLVESRLNSLLK 258 (437)
Q Consensus 231 ~~~---~~~G~Vi~~G~s~~eA~~k~~~a~~ 258 (437)
+++ +++|||+++|+|++||+.++.+.+.
T Consensus 372 ~~g~~mrk~G~v~~~g~~~e~~~~k~~~~~~ 402 (1066)
T PRK05294 372 RLGTQMKSVGEVMAIGRTFEESLQKALRSLE 402 (1066)
T ss_pred CccceecccceEEEEcCCHHHHHHHHHHhcC
Confidence 776 9999999999999999999999975
No 35
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.97 E-value=6.5e-28 Score=249.75 Aligned_cols=284 Identities=17% Similarity=0.175 Sum_probs=202.5
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+.+.+|+.++++++|||+||||..++ ||+|+.+|++.+|+.++++.+. ...+.+++|+||+|.+|++++++.+
T Consensus 138 ~~~~~e~~~~~~~~~~P~VvKP~~g~-gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~ 216 (450)
T PRK06111 138 LEDAEEAIAIARQIGYPVMLKASAGG-GGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLAD 216 (450)
T ss_pred cCCHHHHHHHHHHhCCCEEEEeCCCC-CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEc
Confidence 46889999999999999999998776 8999999999999999987631 1124599999999878999999998
Q ss_pred CCCceEEeeee-eeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.+|+++.+... ......+.......|++ +++++.+++++++.+++++||+.|++|+||+++++|++||+|||||++++
T Consensus 217 ~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN~R~~~~ 296 (450)
T PRK06111 217 THGNTVYLWERECSVQRRHQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTRLQVE 296 (450)
T ss_pred CCCCEEEEEeecccccccccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCc
Confidence 88876655322 22222222222234554 78899999999999999999999999999999988889999999999987
Q ss_pred CCceeeeccccHHHHHHHHHhCCCCCCCCC---CCCcEEEEEeeccCccCCCccccccchhhhh--ccCCceEEEec--c
Q 013729 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKAL--SIPGATVHWYD--K 227 (437)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~a~G~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~pg~~~~~~~--~ 227 (437)
.+++..++|+|+++.+++.++|.+++.... ....+++.++++.... .+.|....+..+. ..++..+.... +
T Consensus 297 ~~~~~~~~Gvd~~~~~i~~~~G~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~p~~G~~~~i~~~~~~~~~~~~~~~~G 374 (450)
T PRK06111 297 HPVTEEITGIDLVEQQLRIAAGEKLSFTQDDIKRSGHAIEVRIYAEDPK--TFFPSPGKITDLTLPGGEGVRHDHAVENG 374 (450)
T ss_pred chhhHHHhCcCHHHHHHHHhcCCCCCCccccCCcCceEEEEEEecCCCC--CcccCCCeeCeEecCCCCCEEEEecccCC
Confidence 777777899999999999999999875421 1233455666654211 1111100111110 11222221111 1
Q ss_pred ccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE
Q 013729 228 PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 302 (437)
Q Consensus 228 ~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~ 302 (437)
..+.+ .+++|+|+++|+|.+||.+++.++.+.+++ .|..++.+.+.++.+.-+..-..+++.
T Consensus 375 ~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~~~~~i~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (450)
T PRK06111 375 VTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKV-------------EGIKTNIPLLLQVLEDPVFKAGGYTTG 438 (450)
T ss_pred CEeChhhcccceEEEEEeCCHHHHHHHHHHHHHhCEE-------------eCccCCHHHHHHHhcChhhcCCcccch
Confidence 11111 357799999999999999999999998763 345788888888776555444444443
No 36
>PLN02735 carbamoyl-phosphate synthase
Probab=99.96 E-value=1.7e-28 Score=275.00 Aligned_cols=242 Identities=18% Similarity=0.191 Sum_probs=191.0
Q ss_pred ccCCHHHHHHHHHhhC-CcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCCeEEEEEEEEcCC
Q 013729 2 EVNDLESARRAGKQFG-YPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKELAVIVVRGRD 78 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~g-yPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~I~g~~E~sv~~~~d~~ 78 (437)
.+++.+++.++++++| ||+||||++++ ||+|+.+|+|++||.++++.+. ...+++||||||.|++|+++++++|.+
T Consensus 164 ~v~s~eea~~~~~~iG~yPvVVKP~~~~-GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G~kE~ev~Vl~D~~ 242 (1102)
T PLN02735 164 IATTLDECFEIAEDIGEFPLIIRPAFTL-GGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLGWKEYELEVMRDLA 242 (1102)
T ss_pred EeCCHHHHHHHHHHhCCCCEEEEeCCCC-CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCCCeEEEEEEEEcCC
Confidence 3578899999999999 99999998754 8999999999999999998753 334569999999988999999999887
Q ss_pred CceEEeeeeeeEEe----cCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCC-ceEEEEEEEEeC-CCcEEEEEEcCCC
Q 013729 79 KSILCYPVVETIHK----ENICHIVKAPA-AVPWKISELATDVAHKAVSSLEG-AGIFAVELFWTN-NGQILLNEVAPRP 151 (437)
Q Consensus 79 G~~~~~~~~e~~~~----~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~-~G~~~ve~~~~~-dg~~~viEiNpR~ 151 (437)
|+++.++..+++.. .|+ +..+.|+ .++++..+++++++.+++++||+ .|.+|+||++++ +|++||+|||||+
T Consensus 243 g~~i~v~~ie~~dp~gvh~G~-s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEVNPR~ 321 (1102)
T PLN02735 243 DNVVIICSIENIDPMGVHTGD-SITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRV 321 (1102)
T ss_pred CCEEEEeeEEEEcCCccccCC-EEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEecCCC
Confidence 88776666665422 344 3445677 59999999999999999999999 499999999984 7899999999999
Q ss_pred CCCCCceeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhh-hhccCCceEEEeccccc
Q 013729 152 HNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEM 230 (437)
Q Consensus 152 ~~sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~pg~~~~~~~~~~~ 230 (437)
+++..+...++|+|+.+.+++.++|++|.+.+....... ...|+| .++- +.++|.|.+.-+.+...
T Consensus 322 s~ss~l~s~atG~~~a~~~~klalG~~l~~~~~~~~~~~----------~a~~ep---~~d~~~~k~p~~~f~~f~~~~~ 388 (1102)
T PLN02735 322 SRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDITLKT----------PASFEP---SIDYVVTKIPRFAFEKFPGSQP 388 (1102)
T ss_pred CCcchhhhhhhCCCHHHHHHHHHCCCChhhhcccccccc----------chheee---cCCcEEEEcccCCcccccCCCc
Confidence 998778888999999999999999999988643211100 012443 2332 24566665544332111
Q ss_pred c---CCceeEEEEEEcCCHHHHHHHHHHhhc
Q 013729 231 R---QQRKMGHITIVGSSMGLVESRLNSLLK 258 (437)
Q Consensus 231 ~---~~~~~G~Vi~~G~s~~eA~~k~~~a~~ 258 (437)
. .|+++|+||++|+|++||+.|+.+.+.
T Consensus 389 ~l~~~mks~ge~m~~gr~~~ea~~ka~~~~~ 419 (1102)
T PLN02735 389 ILTTQMKSVGEAMALGRTFQESFQKALRSLE 419 (1102)
T ss_pred ccceeeeecceEEEecCCHHHHHHHHHHHhc
Confidence 1 168999999999999999999998875
No 37
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.96 E-value=2.9e-27 Score=266.25 Aligned_cols=346 Identities=19% Similarity=0.225 Sum_probs=238.2
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
++|.+|+.++++++|||+||||..++ ||+||++|+|.+|+.++++.+.. ....++|||||++++|+++++++|
T Consensus 136 v~s~dea~~~a~~igyPvVVKP~~gg-GG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~D 214 (1201)
T TIGR02712 136 LSSLDEALEAAKEIGYPVMLKSTAGG-GGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGD 214 (1201)
T ss_pred cCCHHHHHHHHHhcCCeEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEEC
Confidence 57899999999999999999998877 89999999999999988876521 123499999999779999999999
Q ss_pred CCCceEEeeee-eeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC-CCcEEEEEEcCCCCC
Q 013729 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHN 153 (437)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~-dg~~~viEiNpR~~~ 153 (437)
++|+++.++.. +.+++.+.......|++ ++++..+++.+.+.+++++++|+|++++||++++ +|.+||+|||||+++
T Consensus 215 g~g~vv~lg~rd~s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~ 294 (1201)
T TIGR02712 215 GKGKVVALGERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQV 294 (1201)
T ss_pred CCCeEEEeeEEEeeeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCc
Confidence 88888777654 34444444444456664 9999999999999999999999999999999985 478999999999997
Q ss_pred CCCceeeeccccHHHHHHHHHhCCCCCCCCC-----CCCcEEEEEeeccCccCCCccccccchhhhhccCCc-e--EEEe
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM-----KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGA-T--VHWY 225 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~-~--~~~~ 225 (437)
..+++..++|+|+++++++.++|.+++.... ..+.++..+++++. +...+.|..+.+.. ..+|+. + ....
T Consensus 295 ~~~lte~~tGvDlve~~ir~a~G~~~~~~~~~~~~~~~g~ai~~riyae~-p~~~~~p~~G~l~~-v~~p~~vrvd~~v~ 372 (1201)
T TIGR02712 295 EHPVTEMVTGLDLVEWMIRIAAGELPDFASLNISLTPRGAAIEARVYAEN-PAKNFQPSPGLLTD-VQFPDDVRVDTWVE 372 (1201)
T ss_pred chhhHHHHhCCCHHHHHHHHHcCCCCCccccccccccceEEEEEEEeccC-cccCcCCCCceeeE-EECCCeEEEeceec
Confidence 5555666889999999999999998764422 12335556777653 33334432212222 234432 2 2222
Q ss_pred ccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013729 226 DKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 303 (437)
Q Consensus 226 ~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v 303 (437)
.+..+.+ +.++|+|+++|+|+++|++++.+++++++ +.|..++++.+..+...-......+.++
T Consensus 373 ~G~~V~~~~d~~la~vI~~g~~r~eA~~~~~~al~~i~-------------i~G~~tn~~~l~~~~~~~~~~~~~~~t~- 438 (1201)
T TIGR02712 373 TGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETR-------------VYGIETNLDYLRSILSSETFRSAQVSTR- 438 (1201)
T ss_pred CCCEECCccCCCeEEEEEEECCHHHHHHHHHHHHhceE-------------EcCcCcCHHHHHHHhcChhhcCCCccch-
Confidence 2223332 57899999999999999999999998765 3566789999988876544433344333
Q ss_pred ecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCCCCCCCChhhHH--HhhhCCCCCceE
Q 013729 304 VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLL--SIVQMPRGVPVA 379 (437)
Q Consensus 304 ~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~--~~~~~~~gvp~~ 379 (437)
|+.++.-..-.+.|..+|.-..+-+. =|+.-..=+|+|+++ .+|-..--| +-+.-|.+-++.
T Consensus 439 ------------~l~~~~~~~~~i~v~~~G~~ttvQD~-pGR~g~~~~Gvp~sG-~mD~~a~~~aN~lvgN~~~~a~l 502 (1201)
T TIGR02712 439 ------------TLNSFVYTPPAIEVLSPGAQTTVQDY-PGRTGYWDVGVPPSG-PMDSYSFRLANRIVGNDEGAAGL 502 (1201)
T ss_pred ------------hhhhCCCCCCeEEEeccCCCccccCc-CCCCccccCCCCCcc-hhhHHHHHHHHHHhCCCCCCcEE
Confidence 22222222222333333433333222 144566788999964 233332111 223336665555
No 38
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.96 E-value=4.8e-27 Score=236.86 Aligned_cols=292 Identities=18% Similarity=0.248 Sum_probs=236.4
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
++++.+|+.+|++++|||+|+|..++| |||||++|++.+++++.++++.+ .++.++||+|++-+++++|+.+.
T Consensus 169 Pitt~~EA~eF~k~yG~PvI~KAAyGG-GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllg 247 (1176)
T KOG0369|consen 169 PITTVEEALEFVKEYGLPVIIKAAYGG-GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLG 247 (1176)
T ss_pred CcccHHHHHHHHHhcCCcEEEeecccC-CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEec
Confidence 478999999999999999999999988 99999999999999998876421 23569999999999999999999
Q ss_pred cCCCceEE-eeeeeeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 76 GRDKSILC-YPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 76 d~~G~~~~-~~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
|..|++++ |...|++++.++....+.|+. |+++++++|..-+.++++..||.+...+||++|..|+.||||||||+.-
T Consensus 248 D~~GNvvHLyERDCSvQRRHQKVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQV 327 (1176)
T KOG0369|consen 248 DKHGNVVHLYERDCSVQRRHQKVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQV 327 (1176)
T ss_pred ccCCCEEEEeecccchhhhhcceeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceee
Confidence 99999764 555688888888888899997 9999999999999999999999999999999999999999999999986
Q ss_pred CCCce-eeeccccHHHHHHHHHhCCCCCCCCCC------CCcEEEEEeeccCccCCCccccccchhhhhccCCceEEE--
Q 013729 154 SGHHT-IESCYTSQFEQHMRAVVGLPLGDPSMK------TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHW-- 224 (437)
Q Consensus 154 sg~~~-~~~~~~~~~~~~~~~a~G~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~-- 224 (437)
.|.. .+-+++|++..+++.+.|..|++.... .+.++.+++..+ +|...|.|.++.++-...-.|.-+++
T Consensus 328 -EHTvTEEITgvDlV~aQi~vAeG~tLp~lgl~QdkI~trG~aIQCRvTTE-DPa~~FqPdtGriEVfRSgeGmGiRLD~ 405 (1176)
T KOG0369|consen 328 -EHTVTEEITGVDLVQAQIHVAEGASLPDLGLTQDKITTRGFAIQCRVTTE-DPAKGFQPDTGRIEVFRSGEGMGIRLDG 405 (1176)
T ss_pred -eeeeeeeeccchhhhhhhhhhcCCCcccccccccceeecceEEEEEEecc-CccccCCCCCceEEEEEeCCCceEeecC
Confidence 4554 456789999999999999999987653 355777888765 56667887544443222212222333
Q ss_pred ---eccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcE
Q 013729 225 ---YDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPH 299 (437)
Q Consensus 225 ---~~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~ 299 (437)
|.+..+.| ++.+-.+++.|.|.+-+.+|+.+++.++++ -|-.++.+++..+...-..+-..+
T Consensus 406 asafaGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRi-------------RGVKTNIpFllnvL~n~~Fl~g~~ 472 (1176)
T KOG0369|consen 406 ASAFAGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRI-------------RGVKTNIPFLLNVLTNPVFLEGTV 472 (1176)
T ss_pred ccccccccccccccceEEEEEecCCccHHHHHHHHHHHHHHhh-------------cceecCcHHHHHHhcCcceeeeee
Confidence 23344554 567789999999999999999999998773 344678899999887777777788
Q ss_pred EEEEecCCCChh
Q 013729 300 EVRIVSAHRTPD 311 (437)
Q Consensus 300 ~~~v~s~hr~p~ 311 (437)
+.+++. -+|+
T Consensus 473 ~T~FID--e~Pe 482 (1176)
T KOG0369|consen 473 DTTFID--ETPE 482 (1176)
T ss_pred eeEEec--CChH
Confidence 988764 4444
No 39
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=99.95 E-value=1.6e-29 Score=243.29 Aligned_cols=367 Identities=31% Similarity=0.303 Sum_probs=281.6
Q ss_pred EEEeeccCCCeEEEEEEEEcCCCceEEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEE
Q 013729 57 LYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFW 136 (437)
Q Consensus 57 ~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~ 136 (437)
+..+++.+..+++....+++..+-...++..+.+..+..+.....|. .+++.+..-++......+.+-|.+.++.++
T Consensus 3 l~~~~~~~~~k~la~gkvr~v~~~~~~~~~vlti~kD~I~a~~~~~a---~~I~~ka~il~k~t~~~F~~l~~~gv~~~~ 79 (373)
T KOG2835|consen 3 LTTESLDPLGKELAEGKVRDVYELVDSPGLVLTISKDRITALDAAMA---NSIQGKAAILNKITSFVFELLGEAGIETAF 79 (373)
T ss_pred cccccccchhhhhheeeeeeecccccCCCeeEEeeccccchhhhhhh---cchhhHHHHHHHhhhhhHhhhhhhhhheee
Confidence 45667777667887778887776666777777777777666555565 333334443444444444444566678888
Q ss_pred eCCCcEEEEEEcCCCCCCCCceeeeccccHHHHHHHHHhCCCCCCCCCC----CCcEEEEEeeccCccCCCccccccchh
Q 013729 137 TNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMK----TPAAIMYNLLGEAEGERGFYLAHQLIG 212 (437)
Q Consensus 137 ~~dg~~~viEiNpR~~~sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~ 212 (437)
+.++..-..|++||+..+++|++..+..+.|+.+.+...+.++...... ...+.+-+++++.... .+. +.-..
T Consensus 80 ~~~~~~t~~~~~p~~~~~~~~v~~~~~ts~f~k~~~~vp~~~~~~~~~~~S~~k~~a~~~n~~g~e~~~-~~~--~~li~ 156 (373)
T KOG2835|consen 80 TEQCGETAFEARPCPMTPIEWVTRRCATSSFEKKNPGVPEGYRFRGYKTESTFKDDANMDNVWGDEQII-DCA--GLLIG 156 (373)
T ss_pred ccccchhhhhcCCCCCCCceeEEeecchhhHHHhCccCccceeecCccccccccchhhcCcccchhhhh-hhh--hhhcc
Confidence 7775555779999999999999999999999999988887776443221 1123333444332110 000 00000
Q ss_pred hhhccCCceEEEeccccccCCceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHH
Q 013729 213 KALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKIL 292 (437)
Q Consensus 213 ~~~~~pg~~~~~~~~~~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L 292 (437)
+....++..++++.. ++...+..||...+.++..|.......+...... .-...+.+.+++++|...+......+
T Consensus 157 r~~~~~~~~~~~~if-es~k~~~~~h~~~I~d~~ie~gv~~~~~~~~~a~----~v~~~~~~r~~~~~d~~im~D~~~~~ 231 (373)
T KOG2835|consen 157 RDEVKIMQKLPLYIF-ESLKAAWAGHNCAISDMKIEFGVDVTLGEIVLAS----DVIDNDSWRMWPDGDGRIMKDKKVYF 231 (373)
T ss_pred hhhcccccccccchh-hhhhhhhcCCccccccchhhhccchhhhhhhhhh----cccchhheEEcccCCcceeeeeeEEe
Confidence 112245556777776 6655677899999999888877766544433221 02345568899999999999999999
Q ss_pred HHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCCCCCCCChhhHHHhhhC
Q 013729 293 TMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQM 372 (437)
Q Consensus 293 ~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~~~~~~ 372 (437)
..+++..+..+.++|++|....+|...+..+|+.+.++.+++++|+|++++..+..| ++|+.....+|.|++++.+||
T Consensus 232 d~~~vt~e~~ilv~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v~a~f~~~--gvp~~~~~~dg~~~~l~~V~~ 309 (373)
T KOG2835|consen 232 DLDEVTNEGLILVDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFERP--GVPVVFVAVDGRDNLLSIVQM 309 (373)
T ss_pred ccccCCccceEEEeecCchhHhhhhhhcccCceEEEEeccCCCCCChhhHHhhcccc--Ccceeeeecccccccccceec
Confidence 999999999999999999999999988999999999999999999999999999999 999987889999999999999
Q ss_pred CCCCceEEEEeCCcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHHHhHhhhhhhhc
Q 013729 373 PRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYLN 436 (437)
Q Consensus 373 ~~gvp~~tv~~~~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (437)
|.|+|++|++|+++.|||.+|+++|++.|+.|+.|++.|+.++++.+.++++||+..||+.|+.
T Consensus 310 ~~~~~~~~v~v~~p~~aa~~aar~l~~~~~~i~gk~~~~~l~~~~~~~~~~~Kle~~~~~~~~~ 373 (373)
T KOG2835|consen 310 PNGVPVATVAVNNPENAALLAARILGLSNEMITGKMRSYQLNQQIIILNKDRKLETVGWEPYSY 373 (373)
T ss_pred cCCccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHhcccccHHHHHHhhhHhhccCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999973
No 40
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.94 E-value=8.3e-26 Score=221.19 Aligned_cols=242 Identities=19% Similarity=0.224 Sum_probs=188.7
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCC--CcEEEeeccCCCeEEEEEEEEcCCCc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFD--RGLYVEKWAPFVKELAVIVVRGRDKS 80 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~--~~~lvEe~I~g~~E~sv~~~~d~~G~ 80 (437)
+++.+++.++++.+||||||||+++. ||.|..+++|++||.+..+...... .++++||+|.|++|++..+++|.+++
T Consensus 136 ~~~~~e~~~~~~~ig~PvIVrP~~~l-GG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n 214 (400)
T COG0458 136 AHSVEEADEIADEIGYPVIVKPSFGL-GGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDN 214 (400)
T ss_pred cccHHHHhhhHhhcCCCEEEecCcCC-CCCceeEEeCHHHHHHHHHhccccCccccceeeeeecCceEEEEEEEEeCCCC
Confidence 56889999999999999999998865 8999999999999999988754322 57999999999999999999999888
Q ss_pred eEEeeeeeeEEecCce---EEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCC-CcEEEEEEcCCCCCCC
Q 013729 81 ILCYPVVETIHKENIC---HIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHNSG 155 (437)
Q Consensus 81 ~~~~~~~e~~~~~g~~---~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~d-g~~~viEiNpR~~~sg 155 (437)
++.....++....|.. +....|++ +++...+.++..+.++++++|..|-+|+||.++++ |++|++|+|||+++|.
T Consensus 215 ~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrss 294 (400)
T COG0458 215 CIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSS 294 (400)
T ss_pred EEEEEeCCccccccccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcCcch
Confidence 7766556666444332 33456776 88888888899999999999999999999999876 5899999999999999
Q ss_pred CceeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhh-hhccCCceEEEeccc--ccc-
Q 013729 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKP--EMR- 231 (437)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~pg~~~~~~~~~--~~~- 231 (437)
...+++++..........+.|..+++........ -+ ..|.| +++- +.+.|.|++..|... ...
T Consensus 295 aLaskAtgypia~vaakla~g~~l~Ei~n~it~~----t~------a~feP---sldyvv~k~pr~~f~kf~~~~~~l~~ 361 (400)
T COG0458 295 ALASKATGYPIAKVAAKLAVGYTLDEIRNDITGR----TP------ASFEP---SLDYVVTKIPRFDFEKFPGADRRLGT 361 (400)
T ss_pred hhhhhccCChHHHHHHHhhcccCchhhcCccccc----cc------cccCC---ccceeeeecCCCCcccccccccceee
Confidence 9999999977777777888898888765422110 01 12343 3331 245566654333211 111
Q ss_pred CCceeEEEEEEcCCHHHHHHHHHHhhc
Q 013729 232 QQRKMGHITIVGSSMGLVESRLNSLLK 258 (437)
Q Consensus 232 ~~~~~G~Vi~~G~s~~eA~~k~~~a~~ 258 (437)
.++++|+||++|+||+||+.|+.++++
T Consensus 362 ~mks~gevm~igr~f~eal~ka~~~l~ 388 (400)
T COG0458 362 QMKSVGEVMAIGRTFEEALQKALRSLE 388 (400)
T ss_pred eeeccceEEEecchHHHHHHHHHHhhc
Confidence 167899999999999999999998875
No 41
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94 E-value=2.2e-24 Score=220.67 Aligned_cols=253 Identities=14% Similarity=0.127 Sum_probs=174.2
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+++.+|+.+++++++||+||||..++ +|+||.++++.+|+.++++.+.. ....++|||||+| .|+++.++.|
T Consensus 129 ~~~~~ea~~~~~~~~~PvVVKp~~~~-~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G-~E~Sv~~~~d 206 (426)
T PRK13789 129 FTEYSSSLSYLESEMLPIVIKADGLA-AGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG-QEASIFAISD 206 (426)
T ss_pred eCCHHHHHHHHHhcCCCEEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC-eEEEEEEEEC
Confidence 57889999999999999999997654 99999999999999999987631 1236999999998 9999999986
Q ss_pred CCCceEEeeeeeeEEe--cCc------eEEEEeCCC-CCHHHHHHHHH-HHHHHHHHc---C--CceEEEEEEEEeCCCc
Q 013729 77 RDKSILCYPVVETIHK--ENI------CHIVKAPAA-VPWKISELATD-VAHKAVSSL---E--GAGIFAVELFWTNNGQ 141 (437)
Q Consensus 77 ~~G~~~~~~~~e~~~~--~g~------~~~~~~P~~-l~~~~~~~i~~-~a~~i~~al---g--~~G~~~ve~~~~~dg~ 141 (437)
+. .+..+++.+...+ +++ .+..+.|++ ++++..+++++ ++++++++| | |+|++++||+++++|+
T Consensus 207 g~-~~~~lp~~~d~k~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g~ 285 (426)
T PRK13789 207 GD-SYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGE 285 (426)
T ss_pred CC-EEEEccceEecccccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCCC
Confidence 43 5666776543222 111 245677887 68888888864 556666555 5 7899999999998888
Q ss_pred EEEEEEcCCCCCCCCceee-eccccHHHHHHHHHhCC-CCCCCCCCCCcEEEEEeeccCccCCCccccccchh-hhhcc-
Q 013729 142 ILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGL-PLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIG-KALSI- 217 (437)
Q Consensus 142 ~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~a~G~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~- 217 (437)
+||+|+|+|+|.+....+. ....|+++.+++.+.|. +-.....+...+ ++.++...+....+.. +.. .+...
T Consensus 286 ~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~~g~l~~~~~~~~~~~s-~~vv~a~~gyp~~~~~---g~~i~~~~~~ 361 (426)
T PRK13789 286 PKVVEFNCRFGDPETQCVLAMLDGDLLELLYAASTGKIKVVNLKLKQGAA-AVVVLAAQGYPDSYEK---NIPLNLPETS 361 (426)
T ss_pred EEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHHcCCCCCCCceecCCce-EEEEECcCCcCCCcCC---CCEEeccCcC
Confidence 9999999999875544333 34589999999999994 211222222223 3344444332211211 110 01111
Q ss_pred -CCceEEEec-----cccccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 218 -PGATVHWYD-----KPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 218 -pg~~~~~~~-----~~~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
+++.+...+ +.....+.|+..|+++|+|.+||+++++++++.|++
T Consensus 362 ~~~~~if~a~~~~~~~~~~t~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~ 412 (426)
T PRK13789 362 GQNVVLFHAGTKKKDGKVFSSGGRILGIVAQGKDLKDSVDQAYSFLEKIQA 412 (426)
T ss_pred CCCcEEEEeeeeeeCCEEEeCCCeEEEEEEecCCHHHHHHHHHHHHhcCCC
Confidence 232222111 111223788888999999999999999999998875
No 42
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94 E-value=9.4e-25 Score=224.17 Aligned_cols=249 Identities=17% Similarity=0.163 Sum_probs=170.7
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+.+.+++.++++++|||+||||..++ ||+||++|+|.+|+.++++.+.. ..+.+||||||+| .|++++++.
T Consensus 122 ~~~~~~~~~~~~~~~~~P~VvKP~~~~-gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~ 199 (420)
T PRK00885 122 TFTDAEEALAYLDEKGAPIVVKADGLA-AGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEASFFAFV 199 (420)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEeCCCC-CCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEEEEEEE
Confidence 357889999999999999999997654 99999999999999999987642 2346999999997 999999998
Q ss_pred cCCCceEEeeeeeeEEec--C------ceEEEEeCCC-CCHHHHHHHHH-HHHHHHHHc---C--CceEEEEEEEEeCCC
Q 013729 76 GRDKSILCYPVVETIHKE--N------ICHIVKAPAA-VPWKISELATD-VAHKAVSSL---E--GAGIFAVELFWTNNG 140 (437)
Q Consensus 76 d~~G~~~~~~~~e~~~~~--g------~~~~~~~P~~-l~~~~~~~i~~-~a~~i~~al---g--~~G~~~ve~~~~~dg 140 (437)
++ +.+..++..+...+. + ..+..+.|++ ++++..+++.+ ++.++.++| | ++|++|+||+++++|
T Consensus 200 ~g-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g 278 (420)
T PRK00885 200 DG-ENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG 278 (420)
T ss_pred CC-CceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCC
Confidence 64 356666665443221 1 1123456776 88887777765 666665543 4 579999999999777
Q ss_pred cEEEEEEcCCCCCCCCceee-eccccHHHHHHHHHhCCCCCCCCCC--CCcEEEEEeeccC-ccCC-----Cccccccch
Q 013729 141 QILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMK--TPAAIMYNLLGEA-EGER-----GFYLAHQLI 211 (437)
Q Consensus 141 ~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~~--~~~~~~~~~~~~~-~~~~-----~~~p~~~~~ 211 (437)
+||+|+|||+|++++..+. ..+.|+++.+++.+.|... ..... ...++ ..++... .+.. .+. ++
T Consensus 279 -~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g~~~-~~~~~~~~~~a~-~~~~~~~gy~~~~~~~~~i~----~~ 351 (420)
T PRK00885 279 -PKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADGKLD-EVELEWDDRAAV-GVVLAAKGYPGDYRKGDVIT----GL 351 (420)
T ss_pred -cEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcCCCC-CCCceECCCcEE-EEEEeCCCCCCCCCCCCEee----cc
Confidence 7999999999987665554 3457999988888888543 22221 22233 3333222 1110 011 22
Q ss_pred hhh----hccCCceEEEeccccccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 212 GKA----LSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 212 ~~~----~~~pg~~~~~~~~~~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
++. ...+++. ...+ .....++|+++|++.|+|.+||.++++++++.|++
T Consensus 352 ~~~~~~~~~~~~~~-~~~~-~~~~~g~R~~~vi~~g~t~~eA~~~a~~~~~~i~~ 404 (420)
T PRK00885 352 EAADADKVFHAGTK-LEDG-KLVTNGGRVLCVTALGDTLEEAQKRAYAALDKIDF 404 (420)
T ss_pred cccCCCEEEECcee-ccCC-eEEEeCCEEEEEEEecCCHHHHHHHHHHHHhccCC
Confidence 110 0011211 0001 11223689999999999999999999999998874
No 43
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94 E-value=1.9e-24 Score=221.71 Aligned_cols=252 Identities=14% Similarity=0.078 Sum_probs=169.7
Q ss_pred CCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCC----HHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013729 4 NDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKS----EEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDK 79 (437)
Q Consensus 4 ~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~----~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G 79 (437)
.+.+|+.+++.+++||+||||..++ ||+||+++++ .+++..+.....+..+.++|||||+| .|++++++.|++
T Consensus 128 ~~~~e~~~~~~~~~~PvVVKP~~~s-ggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G-~E~Svd~~~dg~- 204 (435)
T PRK06395 128 FSEKDAARDYITSMKDVAVKPIGLT-GGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTG-EEFSLQAFSDGK- 204 (435)
T ss_pred CChHHHHHHHHhhCCCEEEEeCCCC-CCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCC-ceEEEEEEEcCC-
Confidence 4678888888888999999997665 9999999954 33433333333232345999999997 899999998643
Q ss_pred ceEEeeeeeeEEec--Cc------eEEEEe-----CCCCCHHHHHHHHHHHHHHHHHcC-----CceEEEEEEEEeCCCc
Q 013729 80 SILCYPVVETIHKE--NI------CHIVKA-----PAAVPWKISELATDVAHKAVSSLE-----GAGIFAVELFWTNNGQ 141 (437)
Q Consensus 80 ~~~~~~~~e~~~~~--g~------~~~~~~-----P~~l~~~~~~~i~~~a~~i~~alg-----~~G~~~ve~~~~~dg~ 141 (437)
.++..+..++..+. |+ .++++. +..++++..+++.+++.+++++|+ ++|++++||+++++|
T Consensus 205 ~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~~g- 283 (435)
T PRK06395 205 HLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNG- 283 (435)
T ss_pred eEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeCCC-
Confidence 56667666554332 11 123333 223899999999999999999998 689999999999666
Q ss_pred EEEEEEcCCCCCCCCcee-eeccccHHHHHHHHHhCCCCCC-CCCCCCcEEEEEeeccCccCCCccccccchhhhhccCC
Q 013729 142 ILLNEVAPRPHNSGHHTI-ESCYTSQFEQHMRAVVGLPLGD-PSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPG 219 (437)
Q Consensus 142 ~~viEiNpR~~~sg~~~~-~~~~~~~~~~~~~~a~G~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg 219 (437)
+||+|+|+|+|+++...+ .....|+++..++.+.| +|.. .......++ ..++...+....+.+...........++
T Consensus 284 p~ViE~n~R~gdpe~~~il~~l~~d~~~~~~~~~~g-~l~~~~~~~~~~~~-~~~l~~~gYp~~~~~g~i~~~~~~~~~~ 361 (435)
T PRK06395 284 VKVIEINARFADPEGINVLYLLKSDFVETLHQIYSG-NLNGSIKFERKATV-LKYIVPPGYGENPSPGRIKIDKTIFDSN 361 (435)
T ss_pred cEEEEEeCCCCCccHHhhhhhcccCHHHHHHHHhcC-CCCCCceecCCCEE-EEEEecCCCCCCCCCCceeccccccCCC
Confidence 899999999998865443 34568999988888888 5543 221222333 3444333222222210000111112244
Q ss_pred ceEEEecc-----ccccCCceeEEEEEEcCCHHHHHHHHHHhhccCC
Q 013729 220 ATVHWYDK-----PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDS 261 (437)
Q Consensus 220 ~~~~~~~~-----~~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~ 261 (437)
+.+...+. ....+++|+++|++.|+|.+||.++++++++.|+
T Consensus 362 ~~~~~~~~~~~~~~~~s~ggRv~~vv~~g~~~~eA~~~a~~~~~~I~ 408 (435)
T PRK06395 362 SDVYYASVSGTLNDVKTSGSRSLAIIAKGDSIPEASEKVDSDLNAVH 408 (435)
T ss_pred CEEEEeeccccCCCeEECCCcEEEEEEEcCCHHHHHHHHHHHHhccC
Confidence 44433221 1233489999999999999999999999999876
No 44
>PRK07206 hypothetical protein; Provisional
Probab=99.94 E-value=1.4e-24 Score=222.71 Aligned_cols=248 Identities=17% Similarity=0.149 Sum_probs=176.5
Q ss_pred cCCHHHHHHHHHhhCC---cEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC-------CCcEEEeeccCCCeEEEEE
Q 013729 3 VNDLESARRAGKQFGY---PLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF-------DRGLYVEKWAPFVKELAVI 72 (437)
Q Consensus 3 v~s~~e~~~~a~~~gy---PvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~-------~~~~lvEe~I~g~~E~sv~ 72 (437)
+.+.+|+.++++++|| |+||||..++ ||+|+++|+|.+|++++++.+.+. .+.++|||||+| .|++++
T Consensus 129 ~~~~~e~~~~~~~~g~~~~P~VvKP~~g~-gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~E~sv~ 206 (416)
T PRK07206 129 TADWEEAEAWLRENGLIDRPVVIKPLESA-GSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIG-TEYVVN 206 (416)
T ss_pred cCCHHHHHHHHHhcCCCCCCEEEeCCCCC-CCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEcccc-EEEEEE
Confidence 5688999999999998 9999997765 999999999999999999876321 246999999997 999999
Q ss_pred EEEcCCCceEEeeeeeeEE---ecCceEEEE-eCCCCCHHHHHHHHHHHHHHHHHcCCc-eEEEEEEEEeCCCcEEEEEE
Q 013729 73 VVRGRDKSILCYPVVETIH---KENICHIVK-APAAVPWKISELATDVAHKAVSSLEGA-GIFAVELFWTNNGQILLNEV 147 (437)
Q Consensus 73 ~~~d~~G~~~~~~~~e~~~---~~g~~~~~~-~P~~l~~~~~~~i~~~a~~i~~alg~~-G~~~ve~~~~~dg~~~viEi 147 (437)
++. .+|++....+..... ..+...... ...+.++...+++.+++.+++++||+. |++|+||+++++| +|++||
T Consensus 207 ~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g-~~liEi 284 (416)
T PRK07206 207 FVS-LDGNHLVTEIVRYHKTSLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADG-PRLIEI 284 (416)
T ss_pred EEE-ECCEEEEEEeEEeeecccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCC-CEEEEE
Confidence 986 467766544332111 112111111 112245678899999999999999995 9999999999777 789999
Q ss_pred cCCCCCCCCc--eeeeccccHHHHHHHHHhCCCCCCCC----CC-CCcEEEEEeeccCccC-CCccccccchhhhhccCC
Q 013729 148 APRPHNSGHH--TIESCYTSQFEQHMRAVVGLPLGDPS----MK-TPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPG 219 (437)
Q Consensus 148 NpR~~~sg~~--~~~~~~~~~~~~~~~~a~G~~l~~~~----~~-~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~pg 219 (437)
|||++|+... ...++|+|+++.+++.++|.+..... .. .+......+.+...+. ..+. +.+++..+|+
T Consensus 285 n~R~~G~~~~~~~~~~~G~d~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~----g~~~~~~~p~ 360 (416)
T PRK07206 285 GARLDGGLHPDVARLATGDSQLDATVESLADPDVFRETLREGYRLKAHVFNVFLISPAAGVFSNVE----FLEEIQKLPS 360 (416)
T ss_pred CCccCCCCccchhhhhcCcCHHHHHHHHHhCchhhccccCCCcChhhceEEEEEecCCCceEeCCc----cHHHHHhCCc
Confidence 9999976544 34577999999999999998653211 11 1222333333333221 2344 6667777787
Q ss_pred c-eEEEecc--ccccC----CceeEEEEEEcCCHHHHHHHHHHhhc
Q 013729 220 A-TVHWYDK--PEMRQ----QRKMGHITIVGSSMGLVESRLNSLLK 258 (437)
Q Consensus 220 ~-~~~~~~~--~~~~~----~~~~G~Vi~~G~s~~eA~~k~~~a~~ 258 (437)
+ ++.++.+ ..+.+ .++.|+|+..++|.+|+.+..+....
T Consensus 361 v~~~~~~~~~G~~v~~~~d~~~~~g~v~~~~~~~~~~~~~~~~~~~ 406 (416)
T PRK07206 361 FKKSHIYVKEGDYVPQTVDLFSQPGTVYLVHKDKEQLWQDYEKIRK 406 (416)
T ss_pred hhheEEecCCCCCccCceecCCCCEEEEEEcCCHHHHHHHHHHHHH
Confidence 6 3333322 22222 47899999999999999998887765
No 45
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.93 E-value=2.1e-24 Score=239.57 Aligned_cols=253 Identities=15% Similarity=0.123 Sum_probs=183.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC-CCCcEEEeeccCCCeEEEEEEEEcCCCc
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG-FDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~-~~~~~lvEe~I~g~~E~sv~~~~d~~G~ 80 (437)
.+++.+|+.+++++++||+||||..++ ||+||++|+|.+|+.++++.+.. ..+.++|||||+| .||+++++.+. |+
T Consensus 127 ~v~~~~e~~~~~~~~~~PvVVKP~~g~-gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~G-~E~sVe~i~~~-g~ 203 (887)
T PRK02186 127 ALALRAVALDALDGLTYPVVVKPRMGS-GSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVEG-DEYSVETLTVA-RG 203 (887)
T ss_pred EeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeecccC-CcEEEEEEEEC-Cc
Confidence 357889999999999999999998765 99999999999999999877642 2345999999997 89999998764 45
Q ss_pred eEEeeeeeeEEecCc---eEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCc-eEEEEEEEEeCCCcEEEEEEcCCCCCCCC
Q 013729 81 ILCYPVVETIHKENI---CHIVKAPAAVPWKISELATDVAHKAVSSLEGA-GIFAVELFWTNNGQILLNEVAPRPHNSGH 156 (437)
Q Consensus 81 ~~~~~~~e~~~~~g~---~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~-G~~~ve~~~~~dg~~~viEiNpR~~~sg~ 156 (437)
+.+..+.+....... ......|+.++++..+++.+++.+++++||++ |++|+||+++++| +||+|||||++++..
T Consensus 204 ~~i~~i~~k~~~~~~~~ve~g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g-~~liEIn~R~~G~~i 282 (887)
T PRK02186 204 HQVLGITRKHLGPPPHFVEIGHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDT-VVIIEINPRLAGGMI 282 (887)
T ss_pred EEEEEEEeeecCCCCCeEEeccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCC-EEEEEECCCCCCccH
Confidence 555554432211111 12235788899999999999999999999996 9999999998655 999999999997432
Q ss_pred c--eeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccC-CCccccccchh-hhhccCCceEEEeccc--cc
Q 013729 157 H--TIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIG-KALSIPGATVHWYDKP--EM 230 (437)
Q Consensus 157 ~--~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~~~~~pg~~~~~~~~~--~~ 230 (437)
. +..++|+|+++.+++.++|.++.......+.+....+++...+. ..+. ..+ .....|++.+.++.++ .+
T Consensus 283 ~~li~~a~Gvd~~~~~i~~~lG~~~~~~~~~~~~~ai~~~~~~~~G~i~~i~----~~~~~~~~~~~~~~~~~~~~G~~v 358 (887)
T PRK02186 283 PVLLEEAFGVDLLDHVIDLHLGVAAFADPTAKRYGAIRFVLPARSGVLRGLL----FLPDDIAARPELRFHPLKQPGDAL 358 (887)
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCCCCCCCCCCCeEEEEEEecCCCceEEecc----cchhhcccCCeEEEEEecCCCCEe
Confidence 2 34467999999999999999886544333333333344433221 1111 111 1223444443332221 22
Q ss_pred c----CCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 231 R----QQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 231 ~----~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
. ..+++|+|++.|+|.+++.+++.++.+.+++
T Consensus 359 ~~~~~~~~~~g~vi~~g~~~~e~~~~~~~~~~~l~~ 394 (887)
T PRK02186 359 RLEGDFRDRIAAVVCAGDHRDSVAAAAERAVAGLSI 394 (887)
T ss_pred cCCCCCCCccEEEEEEcCCHHHHHHHHHHHHhcCEE
Confidence 1 1579999999999999999999999987654
No 46
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.93 E-value=2.2e-23 Score=213.57 Aligned_cols=256 Identities=16% Similarity=0.153 Sum_probs=173.4
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+++.+++.++++++|||+||||..+ ++|+||+++++.+|+.+++..+. .....++|||||+| .|+++.++.
T Consensus 122 ~~~~~~e~~~~~~~~g~PvVVKp~~~-~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G-~E~Sv~~~~ 199 (434)
T PLN02257 122 TFTDPAAAKKYIKEQGAPIVVKADGL-AAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDG-EEASFFALV 199 (434)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEcCCC-CCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CEEEEEEEE
Confidence 35788999999999999999999755 49999999999999999987752 22346999999998 799999988
Q ss_pred cCCCceEEeeeee-eE--Ee------cCceEEEEeCCC-CCHHHHHHH-HHHHHHHHH---Hc--CCceEEEEEEEEe-C
Q 013729 76 GRDKSILCYPVVE-TI--HK------ENICHIVKAPAA-VPWKISELA-TDVAHKAVS---SL--EGAGIFAVELFWT-N 138 (437)
Q Consensus 76 d~~G~~~~~~~~e-~~--~~------~g~~~~~~~P~~-l~~~~~~~i-~~~a~~i~~---al--g~~G~~~ve~~~~-~ 138 (437)
|++ .++..+... +. +. .| .+..+.|++ +++++.+++ +++++++.+ +. .|.|++++||+++ +
T Consensus 200 dG~-~~~pl~~~~dhkr~~d~d~g~ntg-gmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~ 277 (434)
T PLN02257 200 DGE-NAIPLESAQDHKRVGDGDTGPNTG-GMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKK 277 (434)
T ss_pred CCC-cEEEEEeeeecccccCCCCCCCCC-CCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcC
Confidence 643 333333222 11 10 11 234455665 888888875 555555533 44 4679999999998 6
Q ss_pred CCcEEEEEEcCCCCCCCCceee-eccccHHHHHHHHHhCCCCCCCCCCC-CcEEEEEeeccCccCCCccc--cccchhhh
Q 013729 139 NGQILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKT-PAAIMYNLLGEAEGERGFYL--AHQLIGKA 214 (437)
Q Consensus 139 dg~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~p--~~~~~~~~ 214 (437)
+|.+||+|+|+|+|.+.+..+. .++.|+++.+++.+.|. |....... ..++++.+++..+....+.. +..++++.
T Consensus 278 ~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~-l~~~~~~~~~~~av~vv~a~~gYp~~~~~g~~i~~~~~~ 356 (434)
T PLN02257 278 SGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGE-LSGVSLTWSPDSAMVVVMASNGYPGSYKKGTVIKNLDEA 356 (434)
T ss_pred CCCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCC-CCCCCceECCCceEEEEEcCCCCCCCCCCCCEeeCCccc
Confidence 7889999999999987776655 47899999999999985 33222221 12233444544322211110 00133322
Q ss_pred hc-cCCceEEEeccc------cccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 215 LS-IPGATVHWYDKP------EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 215 ~~-~pg~~~~~~~~~------~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
.. .+++.+...+.. ....|.|+..|++.|+|.+||+++++++++.|++
T Consensus 357 ~~~~~~~~v~~a~~~~~~~~~~~t~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~ 411 (434)
T PLN02257 357 EAVAPGVKVFHAGTALDSDGNVVAAGGRVLGVTAKGKDIAEARARAYDAVDQIDW 411 (434)
T ss_pred cccCCCCEEEECCceEccCCEEEECCCeEEEEEEecCCHHHHHHHHHHHHhcCCC
Confidence 11 245443221111 1223789999999999999999999999999875
No 47
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.93 E-value=1.3e-23 Score=215.86 Aligned_cols=254 Identities=18% Similarity=0.187 Sum_probs=168.3
Q ss_pred ccCCHHHHHHHHHhhCCc-EEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC-----CCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYP-LMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF-----DRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyP-vvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~-----~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+.+.+|+.++++++||| +|+||..++ ||+|+++++|.+|+.++++.+... .+.++|||||+| .|+++.++.
T Consensus 124 ~~~~~~~~~~~~~~~g~P~~VvKp~~~~-gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~ 201 (423)
T TIGR00877 124 VFTDPEEALSYIQEKGAPAIVVKADGLA-AGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG-EEVSLLAFV 201 (423)
T ss_pred EECCHHHHHHHHHhcCCCeEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC-ceEEEEEEE
Confidence 357899999999999999 999996654 899999999999999988875321 246999999997 899999998
Q ss_pred cCCCceEEeeeeeeEEec--Cc------eEEEEeCCC-CCHHHHHHH-HHHHHHHHHHc---C--CceEEEEEEEEeCCC
Q 013729 76 GRDKSILCYPVVETIHKE--NI------CHIVKAPAA-VPWKISELA-TDVAHKAVSSL---E--GAGIFAVELFWTNNG 140 (437)
Q Consensus 76 d~~G~~~~~~~~e~~~~~--g~------~~~~~~P~~-l~~~~~~~i-~~~a~~i~~al---g--~~G~~~ve~~~~~dg 140 (437)
|+ +.+..++..+...+. ++ ....+.|.+ ++++..+++ .+++.++.++| | ++|++|+||+++++|
T Consensus 202 dg-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~g 280 (423)
T TIGR00877 202 DG-KTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEG 280 (423)
T ss_pred cC-CeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECCC
Confidence 64 356666665443221 10 123355664 776665543 44555555544 4 679999999999877
Q ss_pred cEEEEEEcCCCCCCCCceee-eccccHHHHHHHHHhCCCCCCCCC--CCCcEEEEEeeccCccCCCccc--cccchhhhh
Q 013729 141 QILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSM--KTPAAIMYNLLGEAEGERGFYL--AHQLIGKAL 215 (437)
Q Consensus 141 ~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~ 215 (437)
+|++|||||+|+++++.+. ..++|+++.+++.+.|. ++.... ....++...+.+...|. .+.. ...+. +..
T Consensus 281 -~~viEin~R~g~~~~~~~~~~~~~dl~~~~~~~~~g~-l~~~~~~~~~~~a~~~~~~~~~yp~-~~~~~~~i~~~-~~~ 356 (423)
T TIGR00877 281 -PKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEGK-LDEVELRFDNRAAVTVVLASEGYPG-DYRKGDPITGE-PLI 356 (423)
T ss_pred -cEEEEEEccCCCccceeEecccCCCHHHHHHHHHcCC-CCCCCceECCCceEEEEEecCCcCC-CCCCCCEeeCC-ccc
Confidence 8999999999987776554 44689999998888875 222211 12222222222221121 0000 00011 111
Q ss_pred ccCCceEEEecc-----ccccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 216 SIPGATVHWYDK-----PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 216 ~~pg~~~~~~~~-----~~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
..+++.+...+. .....++|+|+|++.|+|.++|.++++++.+++++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~vi~~g~~~~~a~~~~~~~~~~i~~ 408 (423)
T TIGR00877 357 EAEGVKVFHAGTKQDNGKLVTSGGRVLAVTALGKSLEEARERAYEAVEYIKF 408 (423)
T ss_pred ccCCCEEEECceeccCCEEEEcCCEEEEEEEecCCHHHHHHHHHHHHhcCCC
Confidence 224443322110 01123789999999999999999999999999875
No 48
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.93 E-value=1.7e-23 Score=211.69 Aligned_cols=248 Identities=13% Similarity=0.088 Sum_probs=169.2
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCCeEEEEEEEEcCCCc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~I~g~~E~sv~~~~d~~G~ 80 (437)
+.+.+++.++++++|||+||||..++ ||+||.+|+|.+|+.++++.+. ...+.++|||||+| .|+++.++.+++ .
T Consensus 88 ~~~~~ea~~~~~~~g~PvVvKp~~~~-~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~~g~-~ 164 (379)
T PRK13790 88 VERKKDALTYIENCELPVVVKKDGLA-AGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEG-EEFSLMTFVNGD-L 164 (379)
T ss_pred ECCHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccC-ceEEEEEEeeCC-E
Confidence 56888999999999999999997665 8999999999999999998764 22346999999997 999999998644 2
Q ss_pred eEEe-eeee-eE--Ee------cCceEEEEeCCC-CCHHHHHHH-HHHHHHHHHHc---C--CceEEEEEEEEeCCCcEE
Q 013729 81 ILCY-PVVE-TI--HK------ENICHIVKAPAA-VPWKISELA-TDVAHKAVSSL---E--GAGIFAVELFWTNNGQIL 143 (437)
Q Consensus 81 ~~~~-~~~e-~~--~~------~g~~~~~~~P~~-l~~~~~~~i-~~~a~~i~~al---g--~~G~~~ve~~~~~dg~~~ 143 (437)
.+.+ ++.. +. +. .|. +..+.|.+ ++++..+++ ++++.+++++| | |.|++|+||+++++| +|
T Consensus 165 ~~~~~~~~~~~kr~~~~d~g~~tgg-~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g-~~ 242 (379)
T PRK13790 165 AVPFDCIAQDHKRAFDHDEGPNTGG-MGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG-PK 242 (379)
T ss_pred EEecccccccccccccCCCCCcCCC-CceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-eE
Confidence 2222 2221 11 11 121 33455664 788776666 77888888877 4 479999999999776 99
Q ss_pred EEEEcCCCCCCCCceee-eccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccC-Cce
Q 013729 144 LNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP-GAT 221 (437)
Q Consensus 144 viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p-g~~ 221 (437)
|+|+|+|+|++....+. .+++|+++.+++.+.|.+++... ....++.+.+.+...|. .+.. +. .+..++ +-.
T Consensus 243 viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~~~~-~~~~~~~v~~~s~gyp~-~~~~---~~-~i~~~~~~~~ 316 (379)
T PRK13790 243 VIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKW-KNESIVGVMLASKGYPD-AYEK---GH-KVSGFDLNEN 316 (379)
T ss_pred EEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCceeE-cCCCEEEEEEccCCCCC-CCCC---CC-eeeecCCCCe
Confidence 99999999976554433 45799999999999998755322 22233333333222221 1110 00 000011 101
Q ss_pred EEEecc------ccccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 222 VHWYDK------PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 222 ~~~~~~------~~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
+ ++++ .....|.|++.|++.|+|.+||.++++++++.+++
T Consensus 317 ~-~~~~~~~~~~~~~~~ggRv~~v~~~g~~~~~a~~~~~~~~~~i~~ 362 (379)
T PRK13790 317 Y-FVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYEKVSQIQS 362 (379)
T ss_pred E-EECCccccCCeEEECCCeEEEEEEecCCHHHHHHHHHHHHhcCCC
Confidence 1 1111 11122689999999999999999999999998875
No 49
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=99.92 E-value=2.9e-24 Score=230.57 Aligned_cols=256 Identities=19% Similarity=0.242 Sum_probs=210.3
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc----CCCCcEEEeeccCCCeEEEEEEEEcC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG----GFDRGLYVEKWAPFVKELAVIVVRGR 77 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~----~~~~~~lvEe~I~g~~E~sv~~~~d~ 77 (437)
.+.|.+|..++++++|||+|||.+.|| ||+|++.|++.+|+...+++.. +.| +++-+..++.++++|+.+.|+
T Consensus 224 cv~~~eegLeaae~IGfPvMIKASEGG-GGKGIRkv~n~ddF~~lf~qv~~EvPGSP--IFlMK~a~~ARHlEVQlLaDq 300 (2196)
T KOG0368|consen 224 CVRNVEEGLEAAEKIGFPVMIKASEGG-GGKGIRKVENEDDFKALFKQVQNEVPGSP--IFLMKLADQARHLEVQLLADQ 300 (2196)
T ss_pred hcCCHHHHHHHHHhcCCceEEEeccCC-CCcceeeccchHHHHHHHHHHHhhCCCCc--eeeeecccCcceeeeehhhhh
Confidence 478999999999999999999999988 9999999999999999998763 445 999999999999999999999
Q ss_pred CCceE-EeeeeeeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC-CCcEEEEEEcCCCCCC
Q 013729 78 DKSIL-CYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHNS 154 (437)
Q Consensus 78 ~G~~~-~~~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~-dg~~~viEiNpR~~~s 154 (437)
.|+.+ .++..|++++.++....-.|+. .+++..++|++.|.++++-.||.+...||+++.+ ||++||+|.|||++-
T Consensus 301 YGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~fyFLELNPRLQV- 379 (2196)
T KOG0368|consen 301 YGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEYYFLELNPRLQV- 379 (2196)
T ss_pred cCCEeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCCCcEEEEecCccccc-
Confidence 99865 4666688888888776778888 6889999999999999999999999999999987 799999999999986
Q ss_pred CCceeeec-cccHHHHHHHHHhCCCCCCCCC------------------------CCCcEEEEEeeccCccCCCcccccc
Q 013729 155 GHHTIESC-YTSQFEQHMRAVVGLPLGDPSM------------------------KTPAAIMYNLLGEAEGERGFYLAHQ 209 (437)
Q Consensus 155 g~~~~~~~-~~~~~~~~~~~a~G~~l~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~p~~~ 209 (437)
.|+++++. ++|+...+++.++|.||..++. ..++++.+++..+ +|...|.|+++
T Consensus 380 EHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~pkgHciA~RITsE-dPddgFkPSsG 458 (2196)
T KOG0368|consen 380 EHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPCPKGHCIAARITSE-DPDDGFKPSSG 458 (2196)
T ss_pred cCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCCCCCCChhhccCCCCCceEEEEEeecc-CCCCCcCCCCC
Confidence 78888764 6999999999999999876432 1245788888876 56668999777
Q ss_pred chhhh--hccCC-ce-EEEecccc--ccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 210 LIGKA--LSIPG-AT-VHWYDKPE--MRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 210 ~~~~~--~~~pg-~~-~~~~~~~~--~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
.+.++ ...++ |- +.+-.+.. ...++..|||+++|+|+.||++.+--+++++.+
T Consensus 459 ~v~eLnFrSssnvWgYFSV~~~g~iHeFadSQFGHiFa~Ge~R~eAi~nMv~aLKelsI 517 (2196)
T KOG0368|consen 459 TVQELNFRSSSNVWGYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELSI 517 (2196)
T ss_pred eeEEeccCCCCCeeEEEEecCCCceeeccccccceeeeecCcHHHHHHHHHHHHHheee
Confidence 77664 11122 32 22211111 112678999999999999999999999988655
No 50
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.90 E-value=1.8e-22 Score=205.31 Aligned_cols=176 Identities=17% Similarity=0.176 Sum_probs=140.4
Q ss_pred cCCHHHHHHHHHh--hCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCc
Q 013729 3 VNDLESARRAGKQ--FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (437)
Q Consensus 3 v~s~~e~~~~a~~--~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~ 80 (437)
+.+.+++.+.++. +||||||||..+| +|+|+++|++.+|+++++..+... ..++||+||+| +|++|+++.+.+|.
T Consensus 165 ~~~~eel~~~~~~~~IGyPvVVKP~~GG-SS~GV~~Vkn~eELe~a~~~~~~~-~~viVEe~I~G-rEitVev~vd~dG~ 241 (493)
T PRK06524 165 VDSYDELSALAHGAGLGDDLVVQTPYGD-SGSTTFFVRGQRDWDKYAGGIVGQ-PEIKVMKRIRN-VEVCIEACVTRHGT 241 (493)
T ss_pred CCCHHHHHHHHHhccCCCcEEEEECCCC-CCcCEEEeCCHHHHHHHHHHhcCC-CCEEEEeccCc-EEEEEEEEEeCCCC
Confidence 3566777777765 9999999998766 999999999999999999886542 35899999996 99999999988887
Q ss_pred eEEeeee------eeE-EecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc---CCceEEEEEEEEeC-CCcEEEEEEcC
Q 013729 81 ILCYPVV------ETI-HKENICHIVKAPAAVPWKISELATDVAHKAVSSL---EGAGIFAVELFWTN-NGQILLNEVAP 149 (437)
Q Consensus 81 ~~~~~~~------e~~-~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~al---g~~G~~~ve~~~~~-dg~~~viEiNp 149 (437)
+...... +.. +++|.+...+.|+.+++++.+++++++.++.++| |+.|+++|||++++ +|++||+||||
T Consensus 242 Vv~~~~~e~vg~~Ei~~yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINP 321 (493)
T PRK06524 242 VIGPAMTSLVGYPELTPYRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNP 321 (493)
T ss_pred EEeccccccccceEEEEccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeC
Confidence 6432111 111 2344444457799999999999999999999998 89999999999985 58899999999
Q ss_pred CCCCCCCceee----eccccHHHHHHHHHhCCCCCC
Q 013729 150 RPHNSGHHTIE----SCYTSQFEQHMRAVVGLPLGD 181 (437)
Q Consensus 150 R~~~sg~~~~~----~~~~~~~~~~~~~a~G~~l~~ 181 (437)
|+++....+.. ..+.+.+..|+++.+|+|..-
T Consensus 322 R~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~~ 357 (493)
T PRK06524 322 RLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYEL 357 (493)
T ss_pred CcccccccchhhhccCCChhHHHHHHHHHhCCCcee
Confidence 99973333322 145888999999999999764
No 51
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=182.37 Aligned_cols=126 Identities=31% Similarity=0.461 Sum_probs=112.7
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCc----EEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCccc
Q 013729 268 ILPRIGIIMGSDSDLPVMKDAAKILTMFSVP----HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 343 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~----~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 343 (437)
..++|++++.++||.|+++++..+++.+|++ ||+.|++.||. ..-+++.+.++.+++|+.|||+..||++++
T Consensus 116 ~~g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRL----l~~l~r~~~~~~~~lIVvAGMEGaLPsvva 191 (254)
T COG1691 116 KGGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRL----LSALKRLKIEDADVLIVVAGMEGALPSVVA 191 (254)
T ss_pred cCceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHhh----hhHHHHHHhhCCCeEEEEcccccchHHHHH
Confidence 3477999999999999999999999999999 79999999994 554444566789999999999999999999
Q ss_pred CCCCCCEEeccCCC---CCCCChhhHHHhhhC-CCCCceEEEEeCCcchHHHHHHHHHcc
Q 013729 344 ARTPLPVIGVPVRA---SALDGLDSLLSIVQM-PRGVPVATVAINNATNAGLLAVRMLGF 399 (437)
Q Consensus 344 ~~~~~pVi~~p~~~---~~~~g~~~l~~~~~~-~~gvp~~tv~~~~~~~aa~~a~~~l~~ 399 (437)
|+.+.|||++|++. ...+|..+|++|+|. .+| +.+|||||+++||.+|+||++.
T Consensus 192 gLvD~PVIavPTsVGYG~g~gGiaaLltMLqSCspG--v~VVNIdNGfGAa~~A~~I~r~ 249 (254)
T COG1691 192 GLVDVPVIAVPTSVGYGAGGGGIAALLTMLQSCSPG--VGVVNIDNGFGAAVLAVQILRR 249 (254)
T ss_pred hccCCCeEecccccccCcCCccHHHHHHHHHhcCCC--eEEEEccCchHHHHHHHHHHHH
Confidence 99999999999983 457889999999999 566 7889999999999999999974
No 52
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.88 E-value=1.7e-20 Score=184.46 Aligned_cols=254 Identities=17% Similarity=0.157 Sum_probs=177.4
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+++.+++++++++.|.|+||||.... +|+||.++.+.+|..++...+.. ...+++||||++| .|+|+.++.|
T Consensus 124 f~~~e~a~ayi~~~g~piVVKadGLa-aGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~G-eE~S~~a~~D 201 (428)
T COG0151 124 FTDPEEAKAYIDEKGAPIVVKADGLA-AGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDG-EEFSLQAFVD 201 (428)
T ss_pred cCCHHHHHHHHHHcCCCEEEeccccc-CCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEecccc-eEEEEEEEEc
Confidence 56899999999999999999996665 89999999999999998876532 1256999999997 9999999997
Q ss_pred CCCceEEeeeeeeEEec--Cc------eEEEEeCCC-CCHHHHHHHH-HHHHHHHHHc-----CCceEEEEEEEEeCCCc
Q 013729 77 RDKSILCYPVVETIHKE--NI------CHIVKAPAA-VPWKISELAT-DVAHKAVSSL-----EGAGIFAVELFWTNNGQ 141 (437)
Q Consensus 77 ~~G~~~~~~~~e~~~~~--g~------~~~~~~P~~-l~~~~~~~i~-~~a~~i~~al-----g~~G~~~ve~~~~~dg~ 141 (437)
++ .++.+|..+...+. |+ .++.++|++ ++++..+++. ++.+..++.| .|+|++..+|+++++|
T Consensus 202 G~-~v~p~p~aQDhKra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G- 279 (428)
T COG0151 202 GK-TVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG- 279 (428)
T ss_pred CC-eEEECccccccccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC-
Confidence 65 67777777555442 11 256788888 7888777776 7777777776 4789999999999988
Q ss_pred EEEEEEcCCCCCCCCceeeecc-ccHHHHHHHHHhCCCCCCCCC-C-CCcEEEEEeeccCccCCCcccc-cc-chhhhhc
Q 013729 142 ILLNEVAPRPHNSGHHTIESCY-TSQFEQHMRAVVGLPLGDPSM-K-TPAAIMYNLLGEAEGERGFYLA-HQ-LIGKALS 216 (437)
Q Consensus 142 ~~viEiNpR~~~sg~~~~~~~~-~~~~~~~~~~a~G~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~p~-~~-~~~~~~~ 216 (437)
+++||.|.|+|.+........- .|+.+.+...+.| .|..... . ...+.+..++...+......+. .. +.++...
T Consensus 280 PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g-~L~~~~~~~~~~~a~v~vvlA~~GYP~~~~kG~~I~~~~~~~~ 358 (428)
T COG0151 280 PKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDG-KLDEVEILFWDKGAAVGVVLAAEGYPGDPEKGDVITGDEEAEE 358 (428)
T ss_pred cEEEEEecccCChhHHHHHHhccccHHHHHHHHHhC-CccccchhhccCCceEEEEEecCCCCCCCCCCCEEecChhhcc
Confidence 8999999999988766655443 5666666655555 3444321 1 1213333444333322122210 00 1111111
Q ss_pred cCCceEEEeccc------cccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 217 IPGATVHWYDKP------EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 217 ~pg~~~~~~~~~------~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
.+..+...+.. .+..|.|.-.|++.|+|.+||.++++++++.+++
T Consensus 359 -~~~~vf~Agv~~~~~~~lvt~GgRvL~v~~~g~t~~eA~~~ay~~~~~i~~ 409 (428)
T COG0151 359 -EGAKVFHAGVKLDDGGQLVTSGGRVLAVVGTGDTLEEAQEKAYEALEKIHF 409 (428)
T ss_pred -cCcEEEEeeEeccCCceEEecCCeEEEEEecCCCHHHHHHHHHHHHhhcCC
Confidence 13444332211 2223788999999999999999999999998875
No 53
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.88 E-value=1.2e-21 Score=177.72 Aligned_cols=148 Identities=22% Similarity=0.328 Sum_probs=111.1
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC----CCcEEEeeccCCCeEEEEEEEEcC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF----DRGLYVEKWAPFVKELAVIVVRGR 77 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~----~~~~lvEe~I~g~~E~sv~~~~d~ 77 (437)
.+.+.+++.+++..++||+||||..++ ||+|+++++|.+|+.++++.+... ...+++||||+| .|++++++..
T Consensus 24 ~~~~~~~~~~~~~~~~~p~vvKp~~g~-gs~gv~~~~~~~~l~~~~~~~~~~~~~~~~~~ivqe~i~g-~e~~~~~~~~- 100 (184)
T PF13535_consen 24 IVDSEEELRAFAEDLGFPFVVKPVDGS-GSRGVFIVHSPEELEAALAEIREDSPLGNGPVIVQEYIPG-DEYSVDGVVD- 100 (184)
T ss_dssp EECSHHHHHHHHHHSSSSEEEEESS-S-TTTT-EEESSHHHHHHHHHHHHHHHS-HSSSEEEEE---S-EEEEEEEEEE-
T ss_pred EECCHHHHHHHHHHcCCCEEEEcCccc-cCCCEEEeCCHHHHHHHHHHHHHhcccCCccEEEEEeeee-eeEEEEEEEE-
Confidence 367899999999999999999998765 899999999999999998876321 235999999996 9999999887
Q ss_pred CCceEEeeeeeeEEecC------ceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC-ceEEEEEEEEeCCCcEEEEEEcCC
Q 013729 78 DKSILCYPVVETIHKEN------ICHIVKAPAAVPWKISELATDVAHKAVSSLEG-AGIFAVELFWTNNGQILLNEVAPR 150 (437)
Q Consensus 78 ~G~~~~~~~~e~~~~~g------~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~-~G~~~ve~~~~~dg~~~viEiNpR 150 (437)
+|+++.....+...... .......+. +....+++++.+.++++++|+ .|++|+||+++++|++|++|||||
T Consensus 101 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~R 178 (184)
T PF13535_consen 101 DGEVVFAGISRYVRQSPGHFSGGVPTGYSVPS--EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPDGELYFIEINPR 178 (184)
T ss_dssp TTEEEEEEEEEEEEEETCCCSSSEEEEEEES----CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETCCEEEEEEEESS
T ss_pred cceEEEEEEEEEecccccccccceeeeeeccc--ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCCCCEEEEEECcc
Confidence 88887666555444321 112222333 333448899999999999999 799999999999999999999999
Q ss_pred CCCC
Q 013729 151 PHNS 154 (437)
Q Consensus 151 ~~~s 154 (437)
++|+
T Consensus 179 ~~G~ 182 (184)
T PF13535_consen 179 FGGG 182 (184)
T ss_dssp --ST
T ss_pred CCCC
Confidence 9963
No 54
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.88 E-value=6.4e-21 Score=176.17 Aligned_cols=142 Identities=23% Similarity=0.300 Sum_probs=115.5
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeee
Q 013729 9 ARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE 88 (437)
Q Consensus 9 ~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e 88 (437)
..+....++||++|||..+| +|.|+.+|+|.+||.++++.+..+++.+|||+||+| +|+++-++.+. +....++.+
T Consensus 25 ~~~~~~~l~~P~~VKP~~~G-sS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~G-~E~tv~vl~~~--~~~~~~~~e 100 (203)
T PF07478_consen 25 IEKILEDLGFPLFVKPASEG-SSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFISG-REFTVGVLGNG--EPRVLPPVE 100 (203)
T ss_dssp HHHHHHHHSSSEEEEESSTS-TTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--SS-EEEEEEEEESS--STEEEEEEE
T ss_pred HHHHHhhcCCCEEEEECCCC-ccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeecc-cceEEEEEecC--CcccCceEE
Confidence 45667889999999999887 899999999999999999998877778999999986 99999999744 344555554
Q ss_pred eEEec------------CceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 89 TIHKE------------NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 89 ~~~~~------------g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
..... +.......|+.+++++.++|+++|.++.++||++|++++||+++++|++||+|||+-||-+
T Consensus 101 i~~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~PGlt 178 (203)
T PF07478_consen 101 IVFPSEFYDYEAKYQPADSETEYIIPADLSEELQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTIPGLT 178 (203)
T ss_dssp EEESSSEEEHHHHHSGCCSCEEEESS-SS-HHHHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS-G-S
T ss_pred EEcCCCceehhheeccCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCccccc
Confidence 43222 1224456799999999999999999999999999999999999989999999999999853
No 55
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.88 E-value=1.9e-20 Score=193.80 Aligned_cols=253 Identities=14% Similarity=0.106 Sum_probs=162.4
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHH-----HHHHH----HHh-------cCCCCcEEEeeccCCC
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEE-----LSSAI----TAL-------GGFDRGLYVEKWAPFV 66 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~e-----l~~~~----~~~-------~~~~~~~lvEe~I~g~ 66 (437)
+++.+++.++++.. +|+||||..++ ||+||.+|+|.++ +.+++ +.+ ....+.++|||||+|
T Consensus 131 ~~~~~ea~~~~~~~-~PvVVKP~~~a-ggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G- 207 (486)
T PRK05784 131 FYDVEEAAKFIEYG-GSVAIKPARQA-GGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDG- 207 (486)
T ss_pred eCCHHHHHHHHhhc-CCEEEeeCCCC-CCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCC-
Confidence 46889999988665 69999997766 9999999999873 33333 332 122356999999997
Q ss_pred eEEEEEEEEcCCCceEEeeeeeeEEe--cC------ceEEEEeC----CC-CCHHHHHHHHHHHHHHHHHcC------Cc
Q 013729 67 KELAVIVVRGRDKSILCYPVVETIHK--EN------ICHIVKAP----AA-VPWKISELATDVAHKAVSSLE------GA 127 (437)
Q Consensus 67 ~E~sv~~~~d~~G~~~~~~~~e~~~~--~g------~~~~~~~P----~~-l~~~~~~~i~~~a~~i~~alg------~~ 127 (437)
.|++++++.|++ .++.++..+...+ .+ ..+..+.| .+ ++++..+++.+++..++++|+ |+
T Consensus 208 ~E~SV~al~dG~-~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~ 286 (486)
T PRK05784 208 VEYTLQVLTDGE-TVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYV 286 (486)
T ss_pred eEEEEEEEECCC-eEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 899999998543 4444554432211 11 12344556 44 577777777788877776663 35
Q ss_pred eEEEEEEEEe-CCCcEEEEEEcCCCCCCCCceee-eccccHHHHHHHHHhCCCCCCCCCC--CCcEEEEEeeccCccCCC
Q 013729 128 GIFAVELFWT-NNGQILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMK--TPAAIMYNLLGEAEGERG 203 (437)
Q Consensus 128 G~~~ve~~~~-~dg~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~~--~~~~~~~~~~~~~~~~~~ 203 (437)
|++|+||+++ ++| +||||+|+|+|++....+. .++.|+++..++.+.|. |...... ...++ +.++...+....
T Consensus 287 G~l~~elmlt~~~G-P~vIE~n~R~Gdpe~~~llp~l~~dl~~~~~~~~~g~-l~~~~~~~~~~~~~-~vv~as~gYp~~ 363 (486)
T PRK05784 287 GVISGQMMLTELWG-PTVIEYYSRFGDPEASNIIPRIESDFGELFELAATGK-LSKAKIKFNEEPSV-VKAIAPLGYPLS 363 (486)
T ss_pred EEEEEEEEEecCCC-cEEEEEecccCCchHHHHHHhccCCHHHHHHHHHcCC-CCCCCeeecCCceE-EEEECCCCCCCc
Confidence 9999999999 777 8999999999976554333 34579999999999985 3322222 23333 444444322111
Q ss_pred --cccc--ccchhhhhccCCceEEEecc-----ccccCCceeEEEEEEcCCHHHHHHHHHHhhccC-Cc
Q 013729 204 --FYLA--HQLIGKALSIPGATVHWYDK-----PEMRQQRKMGHITIVGSSMGLVESRLNSLLKED-SS 262 (437)
Q Consensus 204 --~~p~--~~~~~~~~~~pg~~~~~~~~-----~~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i-~~ 262 (437)
+.+. ....++....++..+...+. .....|.|+..|++.|+|++||+++++++++.| ++
T Consensus 364 ~~~~~g~~i~~~~~~~~~~~~~v~~ag~~~~~~~~~t~ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~ 432 (486)
T PRK05784 364 RDLASGRRIVVDLDKIKEEGCLVFFGSVELEGGQLITKGSRALEIVAIGKDFEEAYEKLERCISYVSSD 432 (486)
T ss_pred ccCCCCCEEECCccccccCCCEEEECCceeeCCEEEEcCCCeEEEEEEeCCHHHHHHHHHHHHhhccCC
Confidence 1110 00111100112322322111 112237899999999999999999999999998 53
No 56
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.87 E-value=5.3e-23 Score=214.01 Aligned_cols=244 Identities=19% Similarity=0.223 Sum_probs=197.8
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCce
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~ 81 (437)
.+++.+|++++++++|||++++..+. .||.|--..+|++||.+....+.....+++||+-+.|++|++.++++|..+++
T Consensus 518 a~~sie~al~aae~l~ypvivRaaya-lgglgSgfa~n~eeL~~l~~~a~a~s~QilvekSlkGwkevEyevvrDa~~nc 596 (1435)
T KOG0370|consen 518 AVSTIEEALEAAERLGYPVIVRAAYA-LGGLGSGFANNEEELQDLAAQALALSPQILVEKSLKGWKEVEYEVVRDAYDNC 596 (1435)
T ss_pred hHhHHHHHHHHHHhcCcHHHHHHHHH-hcCccccccccHHHHHHHHhhccccCceeeehhhhccccceEEEEEeccccch
Confidence 35789999999999999999999873 25788889999999999888877777789999999999999999999988888
Q ss_pred EEeeeeeeEEecCce---EEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCC-CcEEEEEEcCCCCCCCC
Q 013729 82 LCYPVVETIHKENIC---HIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHNSGH 156 (437)
Q Consensus 82 ~~~~~~e~~~~~g~~---~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~d-g~~~viEiNpR~~~sg~ 156 (437)
+...-+|++..-|.. +.++.|+. |+++..+.++..+.++.++||..|-+|+|+.+++. -+++++|+|.|++++..
T Consensus 597 iTvcnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSrssa 676 (1435)
T KOG0370|consen 597 ITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSRSSA 676 (1435)
T ss_pred hhhcCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccceeeecccceeEEEEEEEeEEeehhh
Confidence 776666766443322 44567886 99999999999999999999999999999999886 46899999999999999
Q ss_pred ceeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchh-hhhccCCceEEEeccc--ccc-C
Q 013729 157 HTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIG-KALSIPGATVHWYDKP--EMR-Q 232 (437)
Q Consensus 157 ~~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~pg~~~~~~~~~--~~~-~ 232 (437)
.-++++|.++.-...+.++|.||++.+......-. .-|+| +++ .+.++|.||..-+... ++. .
T Consensus 677 LASkaTgypLAy~aAKlalg~~lpe~~n~Vt~~T~----------AcFEp---slDY~v~KiprWDl~kf~~vs~~igss 743 (1435)
T KOG0370|consen 677 LASKATGYPLAYTAAKLALGIPLPELKNSVTKTTT----------ACFEP---SLDYCVVKIPRWDLSKFQRVSTEIGSS 743 (1435)
T ss_pred hhccCccCcHHHHHHHHhcCcccccCCccccccee----------cccCc---chhheeeecccccHHHHHHHHHhhchh
Confidence 99999999999888999999999998753221110 12444 444 3467898875332211 111 2
Q ss_pred CceeEEEEEEcCCHHHHHHHHHHhhcc
Q 013729 233 QRKMGHITIVGSSMGLVESRLNSLLKE 259 (437)
Q Consensus 233 ~~~~G~Vi~~G~s~~eA~~k~~~a~~~ 259 (437)
+.++|+||++|++++||++|+.+..+.
T Consensus 744 mKSvgEvm~iGR~feea~QKalr~vd~ 770 (1435)
T KOG0370|consen 744 MKSVGEVMAIGRTFEEAFQKALRMVDP 770 (1435)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHhhcCh
Confidence 678999999999999999999988663
No 57
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.87 E-value=1.6e-20 Score=186.45 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=132.3
Q ss_pred cCCHHHHHH--HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCc
Q 013729 3 VNDLESARR--AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (437)
Q Consensus 3 v~s~~e~~~--~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~ 80 (437)
+++.+|+.+ +.++++||+|+||..++ +|+|+++++|.+|+.++++... + +++||||+| .|++++++.+.+|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~P~viKP~~g~-~s~gv~~v~~~~el~~~~~~~~--~--~lvqeyi~G-~e~~v~~~~~~~G~ 205 (326)
T PRK12767 132 PESLEDFKAALAKGELQFPLFVKPRDGS-ASIGVFKVNDKEELEFLLEYVP--N--LIIQEFIEG-QEYTVDVLCDLNGE 205 (326)
T ss_pred ccCHHHHHhhhhcccCCCCEEEEeCCCC-CccCeEEeCCHHHHHHHHHhCC--C--eEEEeccCC-ceEEEEEEEcCCCC
Confidence 467888887 56789999999997654 8999999999999999988643 4 999999997 99999999987888
Q ss_pred eEEeeeeeeEE-ecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCcee
Q 013729 81 ILCYPVVETIH-KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTI 159 (437)
Q Consensus 81 ~~~~~~~e~~~-~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~ 159 (437)
++.+...+... ..|........ . .+++.+++.+++++||++|++++||++++ |.+|++|||||++++. ...
T Consensus 206 ~~~~~~~~~~~~~~g~~~~~~~~---~---~~~i~~~~~~i~~~lg~~G~~~vd~~~~~-g~~~viEiNpR~~g~~-~~~ 277 (326)
T PRK12767 206 VISIVPRKRIEVRAGETSKGVTV---K---DPELFKLAERLAEALGARGPLNIQCFVTD-GEPYLFEINPRFGGGY-PLS 277 (326)
T ss_pred EEEEEEeeeeeecCCceeEEEEc---C---CHHHHHHHHHHHHhcCCeeeEEEEEEEEC-CeEEEEEEeCCCCCcc-hhh
Confidence 87665554422 23332221111 1 25688999999999999999999999985 7799999999999743 344
Q ss_pred eeccccHHHHHHHHHhCCCCCCC
Q 013729 160 ESCYTSQFEQHMRAVVGLPLGDP 182 (437)
Q Consensus 160 ~~~~~~~~~~~~~~a~G~~l~~~ 182 (437)
..+|+|+.+.+++.++|.+++..
T Consensus 278 ~~~G~n~~~~~~~~~~g~~~~~~ 300 (326)
T PRK12767 278 YMAGANEPDWIIRNLLGGENEPI 300 (326)
T ss_pred HhhCCCHHHHHHHHHcCCCCCcc
Confidence 57899999999999999987654
No 58
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.87 E-value=7.1e-21 Score=189.48 Aligned_cols=140 Identities=26% Similarity=0.363 Sum_probs=115.6
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeee
Q 013729 9 ARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE 88 (437)
Q Consensus 9 ~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e 88 (437)
+.++.+.++||+||||..+| +|.|+.+|++.+|+.++++.+...++.++||+||+| +|+++.++.+ ++++ .+..+
T Consensus 154 ~~~~~~~~~~P~vVKP~~~g-sS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~G-~E~~v~vl~~-~~~~--~~~~e 228 (333)
T PRK01966 154 LAEIEAKLGLPVFVKPANLG-SSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIKG-REIECAVLGN-DPKA--SVPGE 228 (333)
T ss_pred HHHHHHhcCCCEEEEeCCCC-CccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcCC-EEEEEEEECC-CCeE--cccEE
Confidence 45667789999999998877 899999999999999999987666667999999997 9999999975 4432 22222
Q ss_pred eE-----------EecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 89 TI-----------HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 89 ~~-----------~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.. +..+. ...+.|+.++++..+++++++.+++++||++|++++||+++++|++||+|||+|||-+
T Consensus 229 i~~~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t 304 (333)
T PRK01966 229 IVKPDDFYDYEAKYLDGS-AELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEINTMPGFT 304 (333)
T ss_pred EecCCceEcHHHccCCCC-ceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEeeCCCCCC
Confidence 11 11122 3456788999999999999999999999999999999999988999999999999854
No 59
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.86 E-value=2.1e-20 Score=187.07 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=117.8
Q ss_pred CHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCC-Cc--e
Q 013729 5 DLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD-KS--I 81 (437)
Q Consensus 5 s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~-G~--~ 81 (437)
+.+++.+.+++++||+||||..+| +|.||.+|+|.+||.++++.+...++.+||||||+| +|+++.++.+.+ |+ .
T Consensus 159 ~~~~~~~~~~~l~~PvvVKP~~gg-sS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~G-~E~sv~vi~~~~~g~~~~ 236 (347)
T PRK14572 159 SPRKTLLKLESLGFPQFLKPVEGG-SSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLSG-TEVSCGVLERYRGGKRNP 236 (347)
T ss_pred ChHHHHHHHHhcCCCEEEecCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCccc-EEEEEEEEeCccCCCCCc
Confidence 345555666789999999998877 889999999999999999887555556999999997 999999996422 33 3
Q ss_pred EEeeeeeeEEecC----------ceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCC
Q 013729 82 LCYPVVETIHKEN----------ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151 (437)
Q Consensus 82 ~~~~~~e~~~~~g----------~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~ 151 (437)
..+++.+....++ .....+.|+.+++++.+++++++.+++++||++|++++||+++ +|++|++|||++|
T Consensus 237 ~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~-~~~~~vlEiNt~P 315 (347)
T PRK14572 237 IALPATEIVPGGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIV-DGEPHILETNTLP 315 (347)
T ss_pred eecccEEEecCCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEE-CCcEEEEeeeCCC
Confidence 4455544322111 0134467999999999999999999999999999999999997 6789999999999
Q ss_pred CCC
Q 013729 152 HNS 154 (437)
Q Consensus 152 ~~s 154 (437)
|-+
T Consensus 316 G~t 318 (347)
T PRK14572 316 GMT 318 (347)
T ss_pred CCC
Confidence 854
No 60
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.86 E-value=2.8e-20 Score=186.66 Aligned_cols=146 Identities=23% Similarity=0.319 Sum_probs=117.4
Q ss_pred CHHHHHHH-HHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEE
Q 013729 5 DLESARRA-GKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILC 83 (437)
Q Consensus 5 s~~e~~~~-a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~ 83 (437)
+.+++.+. ...+|||+||||..+| +|.||.+|+|.+||.++++.+..+++.+|||+||+| +|+++.++.+. ....
T Consensus 158 ~~~~~~~~~~~~lg~PviVKP~~~G-sS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~G-rEi~v~Vlg~~--~~~v 233 (364)
T PRK14570 158 DKEGIKKDIKEVLGYPVIVKPAVLG-SSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIEA-REIECSVIGNE--QIKI 233 (364)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCC-CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcCC-EEEEEEEECCC--CceE
Confidence 45566544 4679999999998877 799999999999999999988766667999999996 99999999643 2333
Q ss_pred eeeeeeEEe--------------cCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC-CCcEEEEEEc
Q 013729 84 YPVVETIHK--------------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVA 148 (437)
Q Consensus 84 ~~~~e~~~~--------------~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~-dg~~~viEiN 148 (437)
++..|.... .+.......|+++++++.+++++++.++.++||++|++++||++++ +|++||+|||
T Consensus 234 ~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~g~~yvlEiN 313 (364)
T PRK14570 234 FTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDTGLIYLNEIN 313 (364)
T ss_pred eeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCCCcEEEEEee
Confidence 444432211 1222233568999999999999999999999999999999999986 4889999999
Q ss_pred CCCCCC
Q 013729 149 PRPHNS 154 (437)
Q Consensus 149 pR~~~s 154 (437)
++||-+
T Consensus 314 t~PG~t 319 (364)
T PRK14570 314 TIPGFT 319 (364)
T ss_pred CCCCCC
Confidence 999854
No 61
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.85 E-value=2e-20 Score=187.02 Aligned_cols=157 Identities=22% Similarity=0.360 Sum_probs=120.2
Q ss_pred HHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeee---
Q 013729 13 GKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVET--- 89 (437)
Q Consensus 13 a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~--- 89 (437)
.+.++||+||||..+| +|+|+.+|+|.+||.++++.+..+++.+|||+||+| +|+++.++.+.++ ....++.+.
T Consensus 161 ~~~l~~P~iVKP~~~g-sS~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G-~E~sv~vl~~~~~-~~~~~~~~i~~~ 237 (343)
T PRK14568 161 AATLTYPVFVKPARSG-SSFGVSKVNSADELDYAIESARQYDSKVLIEEAVVG-SEVGCAVLGNGAD-LVVGEVDQIRLS 237 (343)
T ss_pred hhhcCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcCC-EEEEEEEEcCCCC-cceecceEEecC
Confidence 3578999999998877 799999999999999999887666667999999997 9999999865332 222111111
Q ss_pred --EEe--------cC-ceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce
Q 013729 90 --IHK--------EN-ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (437)
Q Consensus 90 --~~~--------~g-~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~ 158 (437)
++. .+ .....+.|+.++++..+++++++.+++++||++|++++||+++++|++||+|||++||.|.
T Consensus 238 ~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~~g~~~llEINt~Pg~t~--- 314 (343)
T PRK14568 238 HGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFLQEDGTVVLNEVNTLPGFTS--- 314 (343)
T ss_pred CCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCEEEEEeeCCCCCCc---
Confidence 111 01 1123467999999999999999999999999999999999999889999999999998542
Q ss_pred eeeccccHHHHHHHHHhCCCCCC
Q 013729 159 IESCYTSQFEQHMRAVVGLPLGD 181 (437)
Q Consensus 159 ~~~~~~~~~~~~~~~a~G~~l~~ 181 (437)
.++|..+. .+.|+++++
T Consensus 315 -----~S~~p~~~-~~~G~~~~~ 331 (343)
T PRK14568 315 -----YSRYPRMM-AAAGIPLAE 331 (343)
T ss_pred -----cCHHHHHH-HHcCCCHHH
Confidence 25555444 345665443
No 62
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.84 E-value=6.9e-20 Score=179.46 Aligned_cols=139 Identities=21% Similarity=0.289 Sum_probs=109.5
Q ss_pred HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCc-eEEeeeeeeE
Q 013729 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKS-ILCYPVVETI 90 (437)
Q Consensus 12 ~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~-~~~~~~~e~~ 90 (437)
..+.++||+||||..+| +|.|+.+|+|.+||.++++.+..+ +.++||+||+| +|+++.++.+.... +...+..+.+
T Consensus 125 ~~~~~~~P~vVKP~~gg-ss~Gv~~v~~~~eL~~a~~~~~~~-~~~lvEefI~G-~E~tv~vl~~~~~~~~~i~~~~~~~ 201 (296)
T PRK14569 125 AEDEISFPVAVKPSSGG-SSIATFKVKSIQELKHAYEEASKY-GEVMIEQWVTG-KEITVAIVNDEVYSSVWIEPQNEFY 201 (296)
T ss_pred hHhhcCCCEEEEeCCCC-CCcCeEEcCCHHHHHHHHHHHHhc-CCEEEEccccc-EEEEEEEECCcCcceEEEecCCCcC
Confidence 35678999999998877 899999999999999999886543 35999999997 99999998543211 1222221111
Q ss_pred Ee----cCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 91 HK----ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 91 ~~----~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.. .+. .....|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||-+
T Consensus 202 ~~~~k~~~~-~~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t 268 (296)
T PRK14569 202 DYESKYSGK-SIYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSPGMT 268 (296)
T ss_pred ChhhccCCC-cEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCC
Confidence 00 122 2334688899999999999999999999999999999999988999999999999853
No 63
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.83 E-value=2.1e-19 Score=176.67 Aligned_cols=149 Identities=26% Similarity=0.304 Sum_probs=116.1
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceE
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL 82 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~ 82 (437)
+.+.+++.++++++|||+||||..++ +|+|+.++++.+|+.++++........+++|+||+| +|+++.++.+....++
T Consensus 119 ~~~~~~~~~~~~~~~~P~ivKP~~g~-~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~G-~E~~v~vi~~~~~~~~ 196 (304)
T PRK01372 119 LTREEDLLAAIDKLGLPLVVKPAREG-SSVGVSKVKEEDELQAALELAFKYDDEVLVEKYIKG-RELTVAVLGGKALPVI 196 (304)
T ss_pred EeCcchHHHHHhhcCCCEEEeeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccCC-EEEEEEEECCCccceE
Confidence 45677788889999999999998876 899999999999999988776544456999999996 9999998854221111
Q ss_pred Eeeeee---eE---EecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 83 CYPVVE---TI---HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 83 ~~~~~e---~~---~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
...... .. ...|. .....|..++++..+++.+++.++++++|++|++++||+++++|++||+|+||||+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p~~~ 273 (304)
T PRK01372 197 EIVPAGEFYDYEAKYLAGG-TQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQPGMT 273 (304)
T ss_pred EEEecCCEEeeeccccCCC-eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCCCCC
Confidence 110000 00 01122 2345677799999999999999999999999999999999988999999999999854
No 64
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.83 E-value=1.9e-19 Score=176.76 Aligned_cols=138 Identities=21% Similarity=0.279 Sum_probs=111.2
Q ss_pred HHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeeeEEe
Q 013729 13 GKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHK 92 (437)
Q Consensus 13 a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~~~~ 92 (437)
...++||+||||..++ ||+||.+|+|.+||.++++......+.++||+||+| +|+++.++.+.. +...+++.+....
T Consensus 121 ~~~l~~P~vvKP~~g~-~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~G-~E~sv~vl~~~~-~~~vl~~~e~~~~ 197 (299)
T PRK14571 121 TSPLGYPCVVKPRREG-SSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIPG-REMTVSILETEK-GFEVLPILELRPK 197 (299)
T ss_pred hhhcCCCEEEecCCCC-CcCCEEEECCHHHHHHHHHHHHhhCCcEEEEccccc-eEEEEEEEcCCC-CeeeeceEEEecC
Confidence 4568999999998877 899999999999999998875433446999999996 999999998643 4455555443211
Q ss_pred cC----------ceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 93 EN----------ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 93 ~g----------~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.+ .......|+.++++..+++++++.+++++||++|++++||+++ +|++||+|||++|+-+
T Consensus 198 ~~~~~~~~k~~~g~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~-~~~~~viEiN~~Pg~~ 268 (299)
T PRK14571 198 RRFYDYVAKYTKGETEFILPAPLNPEEERLVKETALKAFVEAGCRGFGRVDGIFS-DGRFYFLEINTVPGLT 268 (299)
T ss_pred CCccccccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCcEEEEEeeCCCCCC
Confidence 11 1122346888999999999999999999999999999999997 5789999999999854
No 65
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.82 E-value=3.3e-19 Score=196.89 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=117.6
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeee
Q 013729 9 ARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE 88 (437)
Q Consensus 9 ~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e 88 (437)
+.++.+++|||+||||..+| +|.|+.+|++.+||.++++.+..+++.+|||+|+.+++|+++.++.+.++.....+..+
T Consensus 602 ~~~~~~~lg~P~iVKP~~~G-sS~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~~grEi~v~vl~~~~~~~~~~~~~e 680 (809)
T PRK14573 602 LAHIVEAFSFPMFVKTAHLG-SSIGVFEVHNVEELRDKISEAFLYDTDVFVEESRLGSREIEVSCLGDGSSAYVIAGPHE 680 (809)
T ss_pred HHHHHHhcCCCEEEeeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccCCCEEEEEEEEeCCCCceEeccceE
Confidence 45677889999999999888 78999999999999999998765556699999998779999999987665332222222
Q ss_pred eE-----------E-ecCce-EEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 89 TI-----------H-KENIC-HIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 89 ~~-----------~-~~g~~-~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.. + ..|.. ....+|+.+++++.+++++++.++.++||++|++++||+++++|++||+|||||||-|
T Consensus 681 ~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~g~~yv~EiNt~PG~t 759 (809)
T PRK14573 681 RRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFFLDEEGNFWLSEMNPIPGMT 759 (809)
T ss_pred EccCCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCC
Confidence 11 1 11211 2234688999999999999999999999999999999999988999999999999854
No 66
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.82 E-value=5.2e-19 Score=174.74 Aligned_cols=141 Identities=26% Similarity=0.377 Sum_probs=110.8
Q ss_pred HHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeee-
Q 013729 11 RAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVET- 89 (437)
Q Consensus 11 ~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~- 89 (437)
.+.+.++||+||||..++ +|+|+.+++|.+|+.++++.+....+.++||+||+| +|+++.++.+.++........+.
T Consensus 140 ~~~~~~~~P~vvKP~~~~-~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~G-~e~~v~vi~~~~~~~~~~~~~~~~ 217 (315)
T TIGR01205 140 QVAEPLGFPVIVKPAREG-SSVGVSKVKSEEELQAALDEAFEYDEEVLVEQFIKG-RELEVSILGNEEALPIIEIVPEIE 217 (315)
T ss_pred HHHHhcCCCEEEEeCCCC-CccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCCCC-EEEEEEEECCCCccceEEecCCCC
Confidence 445689999999998876 899999999999999998876554456999999996 99999999743321111111110
Q ss_pred -E------EecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 90 -I------HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 90 -~------~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
+ +..+. .....|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||.+
T Consensus 218 ~~~~~~~~~~~~~-~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~viEvN~~pg~~ 288 (315)
T TIGR01205 218 GFYDYEAKYLDGS-TEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINTIPGMT 288 (315)
T ss_pred CeeCcccccCCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCCC
Confidence 1 11122 3345688899999999999999999999999999999999988889999999999853
No 67
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.80 E-value=1.2e-18 Score=170.66 Aligned_cols=166 Identities=21% Similarity=0.272 Sum_probs=130.0
Q ss_pred ccCCHHHHHHHHHhhCCc---EEEEecCCCCCCcCeEEeC-CHHHHHHHHH-------------Hhc--CCCCcEEEeec
Q 013729 2 EVNDLESARRAGKQFGYP---LMVKSKRLAYDGRGNAVAK-SEEELSSAIT-------------ALG--GFDRGLYVEKW 62 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyP---vvvKP~~~g~gg~Gv~~v~-~~~el~~~~~-------------~~~--~~~~~~lvEe~ 62 (437)
.++|.+|++.+++++++| +.|||..+- ||+|.++++ +.+++...+. .+. +....+||.+|
T Consensus 127 ~v~t~~el~~a~~~l~~~~~~~CvKP~~g~-gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMey 205 (329)
T PF15632_consen 127 RVRTADELKAAYEELRFPGQPLCVKPAVGI-GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEY 205 (329)
T ss_pred EeCCHHHHHHHHHhcCCCCceEEEecccCC-CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecC
Confidence 478999999999999887 999997765 899999999 5566555443 111 22356999999
Q ss_pred cCCCeEEEEEEEEcCCCceEEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcE
Q 013729 63 APFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQI 142 (437)
Q Consensus 63 I~g~~E~sv~~~~d~~G~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~ 142 (437)
++| .|||||++++. |+++..-.++.. |. ...+. ..+++.++++++++.+++.|++||||+.|.+|.+
T Consensus 206 L~G-~EySVD~l~~~-G~viaaV~R~K~---G~-~q~l~-------~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~p 272 (329)
T PF15632_consen 206 LPG-PEYSVDCLADE-GRVIAAVPRRKL---GR-RQVLE-------NDEELIELARRLAEAFGLDGLFNIQFRYDEDGNP 272 (329)
T ss_pred CCC-CeEEEEEEecC-CEEEEEEEEEec---Cc-eeEEE-------ECHHHHHHHHHHHHHhCCCceEEEEEEEcCCCCE
Confidence 997 99999999975 887644333222 42 22211 2346889999999999999999999999889999
Q ss_pred EEEEEcCCCCCCCCceeeeccccHHHHHHHHHhCCCCCCC
Q 013729 143 LLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDP 182 (437)
Q Consensus 143 ~viEiNpR~~~sg~~~~~~~~~~~~~~~~~~a~G~~l~~~ 182 (437)
+++|||||++| |...+..+|+|+....+..++|.+.+..
T Consensus 273 ~LLEINpR~sG-Gi~~s~~aGvNlp~la~~~~lG~~~~~~ 311 (329)
T PF15632_consen 273 KLLEINPRPSG-GIGYSCAAGVNLPYLAVKLALGEPIPPP 311 (329)
T ss_pred EEEEeCCCCcc-chhhHhhcCCChHHHHHHHHcCCCCCCc
Confidence 99999999997 4444557899999999999999988765
No 68
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.78 E-value=2e-17 Score=149.80 Aligned_cols=149 Identities=18% Similarity=0.242 Sum_probs=116.8
Q ss_pred ccCCHHHHHHHHHhhCCcE-EEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPL-MVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVV 74 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPv-vvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~ 74 (437)
.++|.+++.+++++.++|+ ||||.... +|+||.+++|.+|..++++++.. ....++||||+.| .|+|+.++
T Consensus 22 ~f~~~~~A~~~l~~~~~p~~ViKadGla-~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~G-~E~S~~a~ 99 (194)
T PF01071_consen 22 VFTDYEEALEYLEEQGYPYVVIKADGLA-AGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLEG-EEVSLFAL 99 (194)
T ss_dssp EESSHHHHHHHHHHHSSSEEEEEESSSC-TTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---S-EEEEEEEE
T ss_pred EECCHHHHHHHHHhcCCCceEEccCCCC-CCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccCC-eEEEEEEE
Confidence 3679999999999999999 99996655 89999999999999999988642 2357999999997 99999999
Q ss_pred EcCCCceEEeeeeeeEEec--Cc------eEEEEeCCC-CCHHHHHHHHH-HHHHHHHHc-----CCceEEEEEEEEeCC
Q 013729 75 RGRDKSILCYPVVETIHKE--NI------CHIVKAPAA-VPWKISELATD-VAHKAVSSL-----EGAGIFAVELFWTNN 139 (437)
Q Consensus 75 ~d~~G~~~~~~~~e~~~~~--g~------~~~~~~P~~-l~~~~~~~i~~-~a~~i~~al-----g~~G~~~ve~~~~~d 139 (437)
.|++ .++.+|..+...+. |+ .++.++|.+ +++++.+++.+ +...++++| .|+|++.+.++++++
T Consensus 100 ~dG~-~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~ 178 (194)
T PF01071_consen 100 TDGK-NFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTED 178 (194)
T ss_dssp EESS-EEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETT
T ss_pred EcCC-eEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCC
Confidence 9876 56777776544432 22 256788887 68888887776 777777766 688999999999977
Q ss_pred CcEEEEEEcCCCCCC
Q 013729 140 GQILLNEVAPRPHNS 154 (437)
Q Consensus 140 g~~~viEiNpR~~~s 154 (437)
| ++|||.|.|+|.+
T Consensus 179 G-p~vlEfN~RfGDP 192 (194)
T PF01071_consen 179 G-PKVLEFNVRFGDP 192 (194)
T ss_dssp E-EEEEEEESSGSTT
T ss_pred C-cEEEEEeCCCCCC
Confidence 7 9999999999864
No 69
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.73 E-value=8.2e-17 Score=155.78 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=112.2
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC---CCcEEEeeccCCC--eEEEEEEEEcC
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF---DRGLYVEKWAPFV--KELAVIVVRGR 77 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~---~~~~lvEe~I~g~--~E~sv~~~~d~ 77 (437)
+.+.+++.++.++++||+|+||..++ +|+|+.++++.+++.+++...... .+.+++|+||++. .++++.++
T Consensus 109 ~~~~~~~~~~~~~~~~p~vvKP~~g~-~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~--- 184 (277)
T TIGR00768 109 AGSPEEALKLIEEIGFPVVLKPVFGS-WGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVV--- 184 (277)
T ss_pred eCCHHHHHHHHHhcCCCEEEEECcCC-CCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEEE---
Confidence 56788999999999999999997765 899999999999999887654321 1359999999963 35666554
Q ss_pred CCceEEeeee---eeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 78 DKSILCYPVV---ETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 78 ~G~~~~~~~~---e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
+|+++..-.. .+...+........|..+++ ++.+++.+++++||+ |.+++||+++++|.+||+|||+||+.
T Consensus 185 ~~~~~~~~~r~~~~~~~~n~~~g~~~~~~~l~~----~~~~~a~~~~~~l~~-~~~~vD~~~~~~g~~~viEiN~~p~~- 258 (277)
T TIGR00768 185 GDEVIAAIYRITSGHWRTNLARGGKAEPCPLTE----EIEELAIKAAKALGL-DVVGIDLLESEDRGLLVNEVNPNPEF- 258 (277)
T ss_pred CCEEEEEEEEcCCCchhhhhhcCCeeeecCCCH----HHHHHHHHHHHHhCC-CeEEEEEEEcCCCCeEEEEEcCCcch-
Confidence 3454321111 00000000011233455554 578899999999998 89999999998889999999999973
Q ss_pred CCceeeeccccHHHHHHH
Q 013729 155 GHHTIESCYTSQFEQHMR 172 (437)
Q Consensus 155 g~~~~~~~~~~~~~~~~~ 172 (437)
......+|+|+.+..++
T Consensus 259 -~~~~~~~g~~l~~~~~~ 275 (277)
T TIGR00768 259 -KNSVKTTGVNIAGKLLD 275 (277)
T ss_pred -hhhHHHHCCCHHHHHHh
Confidence 23345667887776654
No 70
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.71 E-value=1.1e-16 Score=142.77 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=74.4
Q ss_pred hCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeeeEEec--
Q 013729 16 FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKE-- 93 (437)
Q Consensus 16 ~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~~~~~-- 93 (437)
..+|+|+||..+. ||.|++++++.+++...... . .++|+||+| .++|+.++.+.+ +.............
T Consensus 30 ~~~~~viKp~~G~-Gg~~i~~~~~~~~~~~~~~~----~--~i~Qe~i~G-~~~Sv~~l~~~~-~~~~l~~~rq~i~~~~ 100 (161)
T PF02655_consen 30 IDGPWVIKPRDGA-GGEGIRIVDSEDELEEFLNK----L--RIVQEFIEG-EPYSVSFLASGG-GARLLGVNRQLIGNDD 100 (161)
T ss_dssp -SSSEEEEESS--------B--SS--TTE-------------EEEE---S-EEEEEEEEE-SS-SEEEEEEEEEEEET--
T ss_pred cCCcEEEEeCCCC-CCCCeEEECCchhhcccccc----c--eEEeeeeCC-EEeEEEEEEeCC-ceEEEEechHhhcccc
Confidence 4789999997665 99999999999988765443 1 399999997 999999998755 44444443332221
Q ss_pred --CceEEEEeCCCCCHHHHHHHHHHHHHHHHHc-CCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 94 --NICHIVKAPAAVPWKISELATDVAHKAVSSL-EGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 94 --g~~~~~~~P~~l~~~~~~~i~~~a~~i~~al-g~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
....+...|...+. .+++.+++.+++++| |+.|.+++||++++ +.+|++|||||+++
T Consensus 101 ~~~~~~G~~~~~~~~~--~~~~~~~~~~i~~~l~gl~G~~giD~I~~~-~~~~viEINPR~t~ 160 (161)
T PF02655_consen 101 GRFRYCGGIVPADTPL--KEEIIELARRIAEALPGLRGYVGIDFILDD-GGPYVIEINPRFTG 160 (161)
T ss_dssp --TEEEEEEES----H--HHHHHHHHHHHHTTSTT--EEEEEEEEESS--SEEEEEEESS--G
T ss_pred ceeeecccccccCCch--HHHHHHHHHHHHHHcCCCeeeEeEEEEEeC-CcEEEEEEcCCCCC
Confidence 22445566765433 788999999999999 99999999999985 67999999999984
No 71
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.71 E-value=3.5e-16 Score=153.42 Aligned_cols=156 Identities=16% Similarity=0.150 Sum_probs=115.4
Q ss_pred HhhCCcEEEEecCCCCC--CcCeEEeCCHHHHHHHHHHhcCCC-------CcEEEeeccCCCeEEEEEEEEc-CCCceEE
Q 013729 14 KQFGYPLMVKSKRLAYD--GRGNAVAKSEEELSSAITALGGFD-------RGLYVEKWAPFVKELAVIVVRG-RDKSILC 83 (437)
Q Consensus 14 ~~~gyPvvvKP~~~g~g--g~Gv~~v~~~~el~~~~~~~~~~~-------~~~lvEe~I~g~~E~sv~~~~d-~~G~~~~ 83 (437)
+++.|||+|||..++ | |+|+++++|.+|+......+.... ..++|||||.| .|++++++.+ -+|++-.
T Consensus 149 ~eId~PVIVKp~~as-G~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~ 226 (366)
T PRK13277 149 EEIDRPVIVKLPEAK-RRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLEL 226 (366)
T ss_pred cccCccEEEEECCCC-CccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC-CEEEEEEEEeccCCcEEE
Confidence 467899999996654 9 999999999999998877654211 34679999997 8999999988 3776555
Q ss_pred eeeeeeEEe--cC--------------c--eEEE-EeCCCCCHHHHHHHHHHHHHHHHHcC------CceEEEEEEEEeC
Q 013729 84 YPVVETIHK--EN--------------I--CHIV-KAPAAVPWKISELATDVAHKAVSSLE------GAGIFAVELFWTN 138 (437)
Q Consensus 84 ~~~~e~~~~--~g--------------~--~~~~-~~P~~l~~~~~~~i~~~a~~i~~alg------~~G~~~ve~~~~~ 138 (437)
..+...++. +| . .... -.|..+.+.+.+++.+++.+++++++ +.|++++|+++++
T Consensus 227 l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~ 306 (366)
T PRK13277 227 LGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHEPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTP 306 (366)
T ss_pred EEEeeccccccccccccChhhhhhcccCCceEEEcCccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcC
Confidence 444331111 00 0 0111 25667888899999999999999976 5799999999998
Q ss_pred CCcEEEEEEcCCCCCCCCceeeeccccHHHHHHH
Q 013729 139 NGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMR 172 (437)
Q Consensus 139 dg~~~viEiNpR~~~sg~~~~~~~~~~~~~~~~~ 172 (437)
|+++|++|||||.++ |......+|.+...+.++
T Consensus 307 d~~~~V~EInpR~gG-Gtnl~~~aGs~y~~l~~~ 339 (366)
T PRK13277 307 DLDFVVYDVAPRIGG-GTNVYMGVGSPYSKLYFG 339 (366)
T ss_pred CCcEEEEEEcCCcCC-CccceeecCCCcHHHHhc
Confidence 899999999999997 455555667665544444
No 72
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.71 E-value=2.7e-16 Score=152.67 Aligned_cols=162 Identities=20% Similarity=0.326 Sum_probs=115.4
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHh---cC-CCCcEEEeeccCC-CeEEEEEEEEcC
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITAL---GG-FDRGLYVEKWAPF-VKELAVIVVRGR 77 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~---~~-~~~~~lvEe~I~g-~~E~sv~~~~d~ 77 (437)
+.+.+++.++..++|||+|+||..++ +|+|+.++++.+++.++++.. .. ....+++|+||++ ++++++.++.
T Consensus 108 ~~~~~~~~~~~~~~~~P~vvKP~~g~-~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig-- 184 (280)
T TIGR02144 108 AFDREAALKLAEALGYPVVLKPVIGS-WGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIG-- 184 (280)
T ss_pred eCCHHHHHHHHHHcCCCEEEEECcCC-CcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEEC--
Confidence 45788888888899999999998765 899999999999998876432 11 2245999999985 4788887763
Q ss_pred CCceE--EeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 78 DKSIL--CYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 78 ~G~~~--~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
|+.. .+........+........|..++++ +.+++.++++++|+ |++++||+++++|++||+|||+||+.++
T Consensus 185 -~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~~----~~~~a~~~~~~lg~-~~~~vD~~~~~~g~~~v~EvN~~p~~~~ 258 (280)
T TIGR02144 185 -DEAIAAIYRYSNHWRTNTARGGKAEPCPLDEE----VEELAVKAAEAVGG-GVVAIDIFESKERGLLVNEVNHVPEFKN 258 (280)
T ss_pred -CEEEEEEEEcCCchhhhhhcCCceeccCCCHH----HHHHHHHHHHHhCC-CeEEEEEEEcCCCCEEEEEEeCCcchhh
Confidence 3322 11111111111111122346666664 67889999999996 7999999998888899999999998543
Q ss_pred CceeeeccccHHHHHHHHHh
Q 013729 156 HHTIESCYTSQFEQHMRAVV 175 (437)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~a~ 175 (437)
....+|+|+.+..++.+.
T Consensus 259 --~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 259 --SVRVTGVNVAGEILEYAV 276 (280)
T ss_pred --hhHhhCCCHHHHHHHHHH
Confidence 334667888887777653
No 73
>PRK06849 hypothetical protein; Provisional
Probab=99.69 E-value=3.8e-16 Score=158.88 Aligned_cols=145 Identities=17% Similarity=0.115 Sum_probs=105.2
Q ss_pred cCCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCce
Q 013729 3 VNDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (437)
Q Consensus 3 v~s~~e~~~~a~~~-gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~ 81 (437)
+++.+++.++..+. +||+|+||..++ +|+|+.++.+.+++..... .....+++||||+| .|+++.++. .+|++
T Consensus 137 v~~~~~l~~~~~~~~~~P~vlKP~~~~-~~~~v~~~~~~~~l~~~~~---~~~~~~ivQe~I~G-~e~~~~~~~-~~G~v 210 (389)
T PRK06849 137 ITDPEAIRNFMFKTPHTPYVLKPIYSR-FVRRVDLLPKEAALKELPI---SKDNPWVMQEFIQG-KEYCSYSIV-RSGEL 210 (389)
T ss_pred eCCHHHHHHHhhcCCCCcEEEEeCccc-CCCeEEEecCHHHhccccc---CCCCCeEEEEEecC-CeEEEEEEE-ECCEE
Confidence 57889998888776 999999997765 8999999998655443211 11234999999997 788888775 46887
Q ss_pred EEeeeeeeEE-ecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce
Q 013729 82 LCYPVVETIH-KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (437)
Q Consensus 82 ~~~~~~e~~~-~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~ 158 (437)
..+......+ .++.......|. . .+++.+.++++++++|++|.+++||+.+++|++|++|||||++++.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~--~---~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiNpR~~~g~~l~ 283 (389)
T PRK06849 211 RAHSCYKPEYCAGSGAQIAFQPI--N---HPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECNPRTTSGLHLF 283 (389)
T ss_pred EEEEEeeccccCCCCceeEeEEC--C---cHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEecCCCCceeEEc
Confidence 6544322111 122222222232 1 2468999999999999999999999998889999999999999765543
No 74
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.69 E-value=5.3e-16 Score=147.00 Aligned_cols=215 Identities=16% Similarity=0.132 Sum_probs=137.0
Q ss_pred CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeeeEEe--cC
Q 013729 17 GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHK--EN 94 (437)
Q Consensus 17 gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~~~~--~g 94 (437)
-+|+|+||.+++ ||. +.++.-.++.. +..+++|+||+| +.+|+.++.++. +.......+.+.. .+
T Consensus 149 ekt~IlKPv~Ga-GG~-~el~~~~Ee~~---------~~~~i~Qefi~G-~p~Svs~is~g~-~a~~la~N~QiI~~~~~ 215 (389)
T COG2232 149 EKTLILKPVSGA-GGL-VELVKFDEEDP---------PPGFIFQEFIEG-RPVSVSFISNGS-DALTLAVNDQIIDGLRG 215 (389)
T ss_pred ceeeEEeeccCC-Cce-eeecccccccC---------CcceehhhhcCC-ceeEEEEEecCc-ceEEEEEeeeeeccccc
Confidence 367999998765 553 33333222221 244999999997 999999998654 3333332222211 11
Q ss_pred -----ceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeeccccHHHH
Q 013729 95 -----ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQ 169 (437)
Q Consensus 95 -----~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~~~~~~~~~~ 169 (437)
.+.+...|..- +..+++++++..++..||+.|.-+|||++++.| +||+|||||+.+|-.....++++|+|++
T Consensus 216 ~~~~f~Y~GNlTP~~~--~~~ee~e~la~elV~~lgL~GsnGVDfvl~d~g-pyViEVNPR~qGt~e~iE~s~giNl~~l 292 (389)
T COG2232 216 EYSQFVYKGNLTPFPY--EEVEEAERLAEELVEELGLVGSNGVDFVLNDKG-PYVIEVNPRIQGTLECIERSSGINLFRL 292 (389)
T ss_pred ccccceeccCcCCCcc--hhhHHHHHHHHHHHHHhccccccccceEeecCC-cEEEEecCcccchHHHHHHhcCCCHHHH
Confidence 12334456542 233789999999999999999999999998766 8999999999976444455789999999
Q ss_pred HHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCc-eEEEeccccccCCceeEEEEEEcCCHHH
Q 013729 170 HMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGA-TVHWYDKPEMRQQRKMGHITIVGSSMGL 248 (437)
Q Consensus 170 ~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~-~~~~~~~~~~~~~~~~G~Vi~~G~s~~e 248 (437)
|+++..|. |++.....+ .+..+++..+.. .+. ... ..-.. |+..-| -.+..+..+..|++.+++.+.
T Consensus 293 Hi~af~G~-LpEr~kpr~-~a~krILyap~~--v~v------~~l-~~~~~~DiP~~G-tviekgePl~sviA~~nt~~~ 360 (389)
T COG2232 293 HIQAFDGE-LPERPKPRG-YACKRILYAPRT--VRV------PIL-KLSWTHDIPRPG-TVIEKGEPLCSVIASSNTRSG 360 (389)
T ss_pred HHHHhcCc-CcCCCCcce-eEEeEEEeccce--eec------ccc-cccccccCCCCC-cccCCCCceeeeeeccCCHHH
Confidence 99986664 555433222 333454433221 111 111 10000 222111 123347789999999999999
Q ss_pred HHHHHHHhhcc
Q 013729 249 VESRLNSLLKE 259 (437)
Q Consensus 249 A~~k~~~a~~~ 259 (437)
|..-+.+.+..
T Consensus 361 a~~~~er~~er 371 (389)
T COG2232 361 AESMAERLAER 371 (389)
T ss_pred HHHHHHHHHHH
Confidence 99977776654
No 75
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.68 E-value=8.8e-16 Score=150.81 Aligned_cols=161 Identities=19% Similarity=0.222 Sum_probs=116.1
Q ss_pred cCCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC--CCeEEEEEEEEcCCC
Q 013729 3 VNDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP--FVKELAVIVVRGRDK 79 (437)
Q Consensus 3 v~s~~e~~~~a~~~-gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~--g~~E~sv~~~~d~~G 79 (437)
+.+.+++.++++++ +||+|+||..++ +|+||+++++.+++..+++.+...+..++||+||+ .++|+.+.++. |
T Consensus 120 ~~~~~~~~~~~~~~~~~P~VvKP~~g~-~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig---~ 195 (300)
T PRK10446 120 AHSPDDTSDLIDMVGGAPLVVKLVEGT-QGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVG---D 195 (300)
T ss_pred eCCHHHHHHHHHHhCCCCEEEEECCCC-CcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccCCCceEEEEEEC---C
Confidence 35778888888887 799999998876 99999999999999988887644444599999995 24899998873 3
Q ss_pred ceEEeeeeeeEEecCce------EEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 80 SILCYPVVETIHKENIC------HIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 80 ~~~~~~~~e~~~~~g~~------~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
+++. ..+.....++. .....|..+++ ++++++.+++++||+. +.++||+++++| +||+|||++||.
T Consensus 196 ~~~~--~~~r~~~~~~~~~n~~~g~~~~~~~l~~----~~~~~a~~a~~alg~~-~~gvD~~~~~~g-~~vlEvN~~pg~ 267 (300)
T PRK10446 196 EVVA--AIERRAKEGDFRSNLHRGGAASVASITP----QEREIAIKAARTMALD-VAGVDILRANRG-PLVMEVNASPGL 267 (300)
T ss_pred EEEE--EEEEecCCCchhheeccCCeeccCCCCH----HHHHHHHHHHHHhCCC-EEEEEEEEcCCC-cEEEEEECCCCh
Confidence 4322 12211111111 11123444554 4788999999999996 999999998777 899999999974
Q ss_pred CCCceeeeccccHHHHHHHHHhCC
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGL 177 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~ 177 (437)
+ ....++|+|+.+..++.+...
T Consensus 268 ~--~~~~~~g~~~~~~~~~~i~~~ 289 (300)
T PRK10446 268 E--GIEKTTGIDIAGKMIRWIERH 289 (300)
T ss_pred h--hhHHHHCcCHHHHHHHHHHHh
Confidence 3 334567788887777665443
No 76
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=6.9e-16 Score=151.26 Aligned_cols=144 Identities=24% Similarity=0.291 Sum_probs=117.1
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeee
Q 013729 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (437)
Q Consensus 8 e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~ 87 (437)
.+.+....++||++|||...| +|.|+..+++.+|+..+++.+..+++.+++|+|+.+ +|+++.++.+.. +...++..
T Consensus 133 ~~e~~~~~l~~p~~Vkp~~~g-SSvg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~~-rei~v~vl~~~~-~~~~l~~~ 209 (317)
T COG1181 133 IVEEVEEGLGFPLFVKPAREG-SSVGRSPVNVEGDLQSALELAFKYDRDVLREQGITG-REIEVGVLGNDY-EEQALPLG 209 (317)
T ss_pred HHHHhhcccCCCEEEEcCCcc-ceeeEEEeeeccchHHHHHHHHHhCCceeeccCCCc-ceEEEEecCCcc-cceecCce
Confidence 345677789999999999887 899999999999999988888777778999999995 999999987544 33333332
Q ss_pred eeE------------EecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC-CCcEEEEEEcCCCCCC
Q 013729 88 ETI------------HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHNS 154 (437)
Q Consensus 88 e~~------------~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~-dg~~~viEiNpR~~~s 154 (437)
+.. +..+......+|+.+++++.++++++|.++.++||..|++++||++++ +|++|++|||+.||-+
T Consensus 210 eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t 289 (317)
T COG1181 210 EIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMT 289 (317)
T ss_pred EEecCCCeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCCCc
Confidence 221 112111344678889999999999999999999999999999999997 6889999999999844
No 77
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.68 E-value=1.6e-15 Score=150.79 Aligned_cols=136 Identities=18% Similarity=0.163 Sum_probs=105.8
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC-----CCCcEEEeeccCCCeEEEEEEEEcC-CCceEEeeeee
Q 013729 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG-----FDRGLYVEKWAPFVKELAVIVVRGR-DKSILCYPVVE 88 (437)
Q Consensus 15 ~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~-----~~~~~lvEe~I~g~~E~sv~~~~d~-~G~~~~~~~~e 88 (437)
+++||+||||. +++||+|+++++|.+|+.++++.+.. ..+.++|||||.| .|++++++... +|++...++.+
T Consensus 147 ~i~~PvIVKp~-~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G-~e~sv~~f~s~~~~~~e~l~id~ 224 (358)
T PRK13278 147 DIDRPVIVKLP-GAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVG-VPYYFHYFYSPIKNRLELLGIDR 224 (358)
T ss_pred HcCCCEEEEeC-CCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCCC-cEEEEEEEEeccCCeEEEEeece
Confidence 35799999994 55699999999999999999887531 1356999999997 89999998753 57766666544
Q ss_pred eEEec--Cc--------------e---EEEEeCCCCCHHHHHHHHHHHHHHHHH----c--CCceEEEEEEEEeCCCcEE
Q 013729 89 TIHKE--NI--------------C---HIVKAPAAVPWKISELATDVAHKAVSS----L--EGAGIFAVELFWTNNGQIL 143 (437)
Q Consensus 89 ~~~~~--g~--------------~---~~~~~P~~l~~~~~~~i~~~a~~i~~a----l--g~~G~~~ve~~~~~dg~~~ 143 (437)
.+..+ +. . .....|+.+.+.+..++.+.+.+++++ + +..|++++|+++++|+++|
T Consensus 225 r~~~~~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~ 304 (358)
T PRK13278 225 RYESNIDGLVRIPAKDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIV 304 (358)
T ss_pred eeeecccceeeccchhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEE
Confidence 33321 00 0 011246778888889999999988888 4 5679999999999999999
Q ss_pred EEEEcCCCC
Q 013729 144 LNEVAPRPH 152 (437)
Q Consensus 144 viEiNpR~~ 152 (437)
++|+|+|+.
T Consensus 305 V~Eis~R~~ 313 (358)
T PRK13278 305 VFEISARIV 313 (358)
T ss_pred EEEEeCccc
Confidence 999999994
No 78
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.61 E-value=1.2e-14 Score=133.22 Aligned_cols=158 Identities=22% Similarity=0.258 Sum_probs=87.7
Q ss_pred cCCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCC--eEEEEEEEEcCCC
Q 013729 3 VNDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFV--KELAVIVVRGRDK 79 (437)
Q Consensus 3 v~s~~e~~~~a~~~-gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~--~E~sv~~~~d~~G 79 (437)
+.+.+++.++++++ +||+|+||.+++ .|+||.++++.+++...++........+++|+||+.. +++.+.++ +|
T Consensus 24 ~~~~~~~~~~~~~~~~~p~ViKp~~g~-~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vi---g~ 99 (190)
T PF08443_consen 24 TNSPEEAKEFIEELGGFPVVIKPLRGS-SGRGVFLINSPDELESLLDAFKRLENPILVQEFIPKDGGRDLRVYVI---GG 99 (190)
T ss_dssp ESSHHHHHHHHHHH--SSEEEE-SB--------EEEESHCHHHHHHH-----TTT-EEEE----SS---EEEEEE---TT
T ss_pred ECCHHHHHHHHHHhcCCCEEEeeCCCC-CCCEEEEecCHHHHHHHHHHHHhccCcceEeccccCCCCcEEEEEEE---CC
Confidence 56899999999999 899999997765 8999999999999999887654333459999999953 58999888 44
Q ss_pred ceEEeeeee----eEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 80 SILCYPVVE----TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 80 ~~~~~~~~e----~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
+++..-... .+..+-.......|..+++ ++.+++.++++++|+ .+++||++.+ ++.+||+|||+.++-
T Consensus 100 ~vv~a~~r~~~~~d~r~n~~~g~~~~~~~l~~----e~~~~a~~~~~~lgl-~~~giDi~~~-~~~~~v~EvN~~~~~-- 171 (190)
T PF08443_consen 100 KVVGAYRRSSPEGDFRTNLSRGGKVEPYDLPE----EIKELALKAARALGL-DFAGIDILDT-NDGPYVLEVNPNPGF-- 171 (190)
T ss_dssp EEEEEEE------------------EE----H----HHHHHHHHHHHHTT--SEEEEEEEEE-TTEEEEEEEETT-----
T ss_pred EEEEEEEEecCcccchhhhccCceEEEecCCH----HHHHHHHHHHHHhCC-CEEEEEEEec-CCCeEEEEecCCchH--
Confidence 554321111 1111111111234555665 577889999999997 6999996655 556999999999973
Q ss_pred CceeeeccccHHHHHHH
Q 013729 156 HHTIESCYTSQFEQHMR 172 (437)
Q Consensus 156 ~~~~~~~~~~~~~~~~~ 172 (437)
.+....+|++..+..++
T Consensus 172 ~~~~~~~g~~i~~~i~~ 188 (190)
T PF08443_consen 172 RGIEEATGIDIAEEIAE 188 (190)
T ss_dssp TTHHHHH---HHHHHHH
T ss_pred hHHHHHHCcCHHHHHHh
Confidence 33445677777766554
No 79
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.59 E-value=3.2e-13 Score=136.22 Aligned_cols=255 Identities=16% Similarity=0.136 Sum_probs=172.4
Q ss_pred ccCCHHHHHHHHHhhC-CcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEE
Q 013729 2 EVNDLESARRAGKQFG-YPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVV 74 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~g-yPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~E~sv~~~ 74 (437)
++++++++..|.++.+ .++|||..-.. .|+||.+..+.+|.-++++++. ....+++|||+++| .|+|+.++
T Consensus 128 ~ft~~e~a~sfi~~~~~~~~ViKAdGLA-AGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEG-eEvS~laf 205 (788)
T KOG0237|consen 128 TFTDPEEAKSFIQSATDKALVIKADGLA-AGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEG-EEVSFLAF 205 (788)
T ss_pred eeCCHHHHHHHHHhCCCcceEEeecccc-cCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcCc-ceEEEEEE
Confidence 4678999999999999 57999996655 8999999999999999988752 22357999999997 99999999
Q ss_pred EcCCCceEEeeeeeeEEec--Cc------eEEEEeCCC-CCHHHHHHHHH-HHHHHHHHc-----CCceEEEEEEEEeCC
Q 013729 75 RGRDKSILCYPVVETIHKE--NI------CHIVKAPAA-VPWKISELATD-VAHKAVSSL-----EGAGIFAVELFWTNN 139 (437)
Q Consensus 75 ~d~~G~~~~~~~~e~~~~~--g~------~~~~~~P~~-l~~~~~~~i~~-~a~~i~~al-----g~~G~~~ve~~~~~d 139 (437)
.|+. .+...|..+...+- |+ .++.++|++ .++++++.+.+ +.++.++-| .|.|++..-++++++
T Consensus 206 tDG~-s~~~mp~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~ 284 (788)
T KOG0237|consen 206 TDGY-SVRPLPPAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKD 284 (788)
T ss_pred ecCc-ccccCCcccchhhhcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEecC
Confidence 8754 34555555433331 22 255678888 67777766654 445555544 567999999999988
Q ss_pred CcEEEEEEcCCCCCCCCceeeec-cccHHHHHHHHHhCCCCCCCCCCC-CcEEEEEeeccCccCCCccccc--cchhhhh
Q 013729 140 GQILLNEVAPRPHNSGHHTIESC-YTSQFEQHMRAVVGLPLGDPSMKT-PAAIMYNLLGEAEGERGFYLAH--QLIGKAL 215 (437)
Q Consensus 140 g~~~viEiNpR~~~sg~~~~~~~-~~~~~~~~~~~a~G~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~ 215 (437)
| +.++|.|.|+|.+....+... ..|+++..+ +++...|......+ ...++..+++..+...++.+.. ....+ .
T Consensus 285 ~-P~vLEfN~RFGDPEtQv~l~lLesDL~evi~-a~~~~~L~~~~i~w~~~sa~~VV~as~gYP~sy~KG~~It~~~~-~ 361 (788)
T KOG0237|consen 285 G-PKVLEFNVRFGDPETQVLLPLLESDLAEVIL-ACCNGRLDTVDIVWSKKSAVTVVMASGGYPGSYTKGSIITGLPE-A 361 (788)
T ss_pred C-ccEEEEecccCCchhhhhHHHHHhHHHHHHH-HHhhCCccccCccccccceEEEEEecCCCCCCCcCCcccccCcc-c
Confidence 8 789999999998776655543 357776555 45666666655432 1234444454443322222100 01111 1
Q ss_pred ccCCceEEEecc-----ccccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 216 SIPGATVHWYDK-----PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 216 ~~pg~~~~~~~~-----~~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
..|+..+...|. ..+-++.|+-.|.+.+++.++|.+.++.+.+.+++
T Consensus 362 ~~~~~rVFHAGTs~~ss~vvTNGGRVLsVTA~~~~L~sA~e~Ayk~v~~I~F 413 (788)
T KOG0237|consen 362 DRPGTRVFHAGTSLDSSNVVTNGGRVLSVTATGDDLESAAETAYKAVQVISF 413 (788)
T ss_pred CCCcceEEeccccccccceEecCceEEEEEecCchHHHHHHHHHHHheEEee
Confidence 223444433232 11223788888999999999999999999998775
No 80
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.38 E-value=7.3e-12 Score=136.41 Aligned_cols=166 Identities=21% Similarity=0.240 Sum_probs=114.1
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEE-eCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCce
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAV-AKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~-v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~ 81 (437)
+.+.+++.++++++|||+|+||..++ +|+||.+ ++|++|+.++++.+......++||+||+| +|+.+.++ +|++
T Consensus 235 v~s~~~a~~~a~~iG~PvVVKP~~G~-~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe~I~G-~d~Rv~Vv---gg~v 309 (727)
T PRK14016 235 VTSAEDAWEAAEEIGYPVVVKPLDGN-HGRGVTVNITTREEIEAAYAVASKESSDVIVERYIPG-KDHRLLVV---GGKL 309 (727)
T ss_pred eCCHHHHHHHHHHcCCCEEEEECCCC-CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEEecCC-ceEEEEEE---CCEE
Confidence 57899999999999999999998766 8999998 99999999999877544456999999997 89998776 3454
Q ss_pred EEeeeeeeEEe--c----------------------------------------------------CceEEEEe------
Q 013729 82 LCYPVVETIHK--E----------------------------------------------------NICHIVKA------ 101 (437)
Q Consensus 82 ~~~~~~e~~~~--~----------------------------------------------------g~~~~~~~------ 101 (437)
+........+. + |....-..
T Consensus 310 vaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~ 389 (727)
T PRK14016 310 VAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLST 389 (727)
T ss_pred EEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccC
Confidence 43221111000 0 00000000
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC------CCcEEEEEEcCCCCCCCCc-eeeeccccHHHHHH
Q 013729 102 ---PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN------NGQILLNEVAPRPHNSGHH-TIESCYTSQFEQHM 171 (437)
Q Consensus 102 ---P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~------dg~~~viEiNpR~~~sg~~-~~~~~~~~~~~~~~ 171 (437)
....++++-.+..+++.++++.+|+ ++++||++.++ +....|+|||..|+-..+. .......+.....+
T Consensus 390 Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Ii 468 (727)
T PRK14016 390 GGTAIDVTDEVHPENAAIAERAAKIIGL-DIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIV 468 (727)
T ss_pred CCeeEecccccCHHHHHHHHHHHHhcCC-CEEEEEEEecCcccccccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHH
Confidence 0113445566688999999999987 79999998853 1236899999999854433 23334456665556
Q ss_pred HHH
Q 013729 172 RAV 174 (437)
Q Consensus 172 ~~a 174 (437)
..+
T Consensus 469 d~L 471 (727)
T PRK14016 469 DML 471 (727)
T ss_pred HHh
Confidence 553
No 81
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.1e-11 Score=122.07 Aligned_cols=142 Identities=20% Similarity=0.305 Sum_probs=97.8
Q ss_pred cCCHHHHHHHHH-hhCCcEEEEecCCCCCCcCeEEeCCHH-HHHHHHHHhcCCC-CcEEEeeccCCCe-EEEEEEEEcCC
Q 013729 3 VNDLESARRAGK-QFGYPLMVKSKRLAYDGRGNAVAKSEE-ELSSAITALGGFD-RGLYVEKWAPFVK-ELAVIVVRGRD 78 (437)
Q Consensus 3 v~s~~e~~~~a~-~~gyPvvvKP~~~g~gg~Gv~~v~~~~-el~~~~~~~~~~~-~~~lvEe~I~g~~-E~sv~~~~d~~ 78 (437)
+.+.+++.++++ .+|||+|+||.+++ +|+||++++|.+ ++.+..+.+.... ..+|+||||+-.. ..-..++. +
T Consensus 140 ~~~~~~~~~~~~~~~g~pvVlKp~~Gs-~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~--~ 216 (318)
T COG0189 140 TRDPDEAAEFVAEHLGFPVVLKPLDGS-GGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVG--G 216 (318)
T ss_pred EcCHHHHHHHHHHhcCCCEEEeeCCCC-CccceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEe--C
Confidence 346566666655 56899999997765 999999999999 9998888876543 3599999999433 34443443 4
Q ss_pred CceEEeeeeeeEEecCce------EEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCC
Q 013729 79 KSILCYPVVETIHKENIC------HIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (437)
Q Consensus 79 G~~~~~~~~e~~~~~g~~------~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~ 152 (437)
+.+..+-....+..+|+. .+...|..++++ ++++|.+++.+||. ++++||++.+++| .||+|||..|+
T Consensus 217 ~~~~~~y~~~R~~~~~~~R~N~a~Gg~~e~~~l~~e----~~elA~kaa~~lGl-~~~GVDiie~~~g-~~V~EVN~sP~ 290 (318)
T COG0189 217 GEVVAIYALARIPASGDFRSNLARGGRAEPCELTEE----EEELAVKAAPALGL-GLVGVDIIEDKDG-LYVTEVNVSPT 290 (318)
T ss_pred CEEeEEeeeccccCCCCceeeccccccccccCCCHH----HHHHHHHHHHHhCC-eEEEEEEEecCCC-cEEEEEeCCCc
Confidence 455443111111112211 112345667765 78899999999986 7999999998666 89999999876
Q ss_pred C
Q 013729 153 N 153 (437)
Q Consensus 153 ~ 153 (437)
.
T Consensus 291 ~ 291 (318)
T COG0189 291 G 291 (318)
T ss_pred c
Confidence 3
No 82
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.35 E-value=1.2e-11 Score=130.74 Aligned_cols=147 Identities=18% Similarity=0.277 Sum_probs=104.1
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEE-eCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCce
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAV-AKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~-v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~ 81 (437)
+.+.+++.++++++| |+||||..++ +|+||.+ +++++++.++++.+......++||+|++| .|+.+.++ +|++
T Consensus 318 ~~~~~~~~~~~~~~G-~vVVKP~~G~-~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i~G-~d~Rv~Vi---gg~v 391 (547)
T TIGR03103 318 AGNGEAVEAFLAEHG-AVVVKPVRGE-QGKGISVDVRTPDDLEAAIAKARQFCDRVLLERYVPG-EDLRLVVI---DFEV 391 (547)
T ss_pred ECCHHHHHHHHHHhC-CEEEEECCCC-CCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEEeccC-CeEEEEEE---CCEE
Confidence 567889999999999 6999998776 9999997 99999999999887655456999999997 88888766 2343
Q ss_pred EEeeeeeeEE--ec-------------------------------------------------CceEE-----E----Ee
Q 013729 82 LCYPVVETIH--KE-------------------------------------------------NICHI-----V----KA 101 (437)
Q Consensus 82 ~~~~~~e~~~--~~-------------------------------------------------g~~~~-----~----~~ 101 (437)
+..-.....+ -+ |.... . -.
T Consensus 392 vaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~ 471 (547)
T TIGR03103 392 VAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGT 471 (547)
T ss_pred EEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCe
Confidence 3211110000 00 00000 0 00
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC-C-CcEEEEEEcCCCCCCCC
Q 013729 102 PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-N-GQILLNEVAPRPHNSGH 156 (437)
Q Consensus 102 P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~-d-g~~~viEiNpR~~~sg~ 156 (437)
...+++++..++.++|.++++++|+ .+++||+++++ + ....|||+|.|||-.+|
T Consensus 472 ~~dvtd~~~~~~~~~A~~aa~~~gl-~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h 527 (547)
T TIGR03103 472 IHDVTEQLHPDLREAAERAARALDI-PVVGIDFLVPDVTGPDYVIIEANERPGLANH 527 (547)
T ss_pred eEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEeccCCCCCeEEEEecCCcccccc
Confidence 1124556677789999999999998 58999999864 2 23589999999985444
No 83
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.28 E-value=4.5e-11 Score=128.33 Aligned_cols=145 Identities=16% Similarity=0.161 Sum_probs=100.8
Q ss_pred cCCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEeCC---HHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCC
Q 013729 3 VNDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVAKS---EEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD 78 (437)
Q Consensus 3 v~s~~e~~~~a~~~-gyPvvvKP~~~g~gg~Gv~~v~~---~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~ 78 (437)
+.+.+++.+....+ |||+||||..++ +|+||.++.+ .+++.+++..+...+..+|||+||+| +|+++.++.+
T Consensus 496 ~~~~~~a~~~~~~~~g~PVVVKP~~g~-~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~G-~EyRv~VIg~-- 571 (737)
T TIGR01435 496 FSSQALALEAFSLFENKAIVVKPKSTN-YGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLPG-TEYRFFVLND-- 571 (737)
T ss_pred ECCHHHHHHHHHHhcCCCEEEeeCCCC-CcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEecccC-CEEEEEEECC--
Confidence 56777777777776 799999998776 8999999876 78999998877666667999999997 9999987732
Q ss_pred CceEEeeee--eeEEec---------------------------------------------------CceEE-----EE
Q 013729 79 KSILCYPVV--ETIHKE---------------------------------------------------NICHI-----VK 100 (437)
Q Consensus 79 G~~~~~~~~--e~~~~~---------------------------------------------------g~~~~-----~~ 100 (437)
+++....+ -++.-+ |.... .+
T Consensus 572 -kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNl 650 (737)
T TIGR01435 572 -KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNV 650 (737)
T ss_pred -eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcc
Confidence 22111000 000000 00000 00
Q ss_pred ----eCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCC--------CcEEEEEEcCCCCC
Q 013729 101 ----APAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN--------GQILLNEVAPRPHN 153 (437)
Q Consensus 101 ----~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~d--------g~~~viEiNpR~~~ 153 (437)
.+..+++++.....++|.++++++|+. +++||+++.+- ....|||+|.+|+-
T Consensus 651 stGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~di~~p~~~~~~~~~iiEvN~~P~l 714 (737)
T TIGR01435 651 STGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPDETIPDTDKHAIWGVIEANFNPAM 714 (737)
T ss_pred cCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecCCCCCccccccceEEEEEcCCcch
Confidence 012346677778899999999999996 99999998531 12458999999984
No 84
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.23 E-value=1.8e-10 Score=127.95 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=115.5
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEE-eCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCc
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAV-AKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~-v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~ 80 (437)
.+.+.+++.++++++|||+|+||..++ +|+||.+ +++++|+.++++.+......++||+|++| +|+++.++ +|+
T Consensus 233 ~~~s~~ea~~~~~~ig~PvVVKP~~g~-~G~GV~l~v~s~~el~~a~~~a~~~~~~vlVEefI~G-~e~rvlVv---~~~ 307 (864)
T TIGR02068 233 VVQSAEDAWEAAQDLGYPVVIKPYDGN-HGRGVTINILTRDEIESAYEAAVEESSGVIVERFITG-RDHRLLVV---GGK 307 (864)
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCC-CccCEEEEeCCHHHHHHHHHHHHhhCCcEEEEEeccC-CEEEEEEE---CCE
Confidence 367899999999999999999997765 8999998 99999999999887654456999999997 99999776 334
Q ss_pred eEEeeee--eeEEec----------------------------------------------------CceEEE-----E-
Q 013729 81 ILCYPVV--ETIHKE----------------------------------------------------NICHIV-----K- 100 (437)
Q Consensus 81 ~~~~~~~--e~~~~~----------------------------------------------------g~~~~~-----~- 100 (437)
++..-.. .++.-+ |....- .
T Consensus 308 vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls 387 (864)
T TIGR02068 308 VVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLS 387 (864)
T ss_pred EEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEecccccc
Confidence 3322100 000000 100000 0
Q ss_pred ---eCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC------CCcEEEEEEcCCCCCCCCc-eeeeccccHHHHH
Q 013729 101 ---APAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN------NGQILLNEVAPRPHNSGHH-TIESCYTSQFEQH 170 (437)
Q Consensus 101 ---~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~------dg~~~viEiNpR~~~sg~~-~~~~~~~~~~~~~ 170 (437)
.....++++..+..+++.++++++|+ .+++||++..+ +....|+|+|..|+-.+|. .+...+.+.....
T Consensus 388 ~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~I 466 (864)
T TIGR02068 388 TGGVAIDRTDEIHPENAATAVRAAKIIGL-DIAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAI 466 (864)
T ss_pred CCCceEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEecCCCCCccccCcEEEEEcCCcchhhcccccCCCCeeHHHHH
Confidence 01113556666788999999999998 58889998742 1235789999999854443 2334456777777
Q ss_pred HHHHh
Q 013729 171 MRAVV 175 (437)
Q Consensus 171 ~~~a~ 175 (437)
++...
T Consensus 467 l~~lf 471 (864)
T TIGR02068 467 VDMLF 471 (864)
T ss_pred HHHhc
Confidence 76653
No 85
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.20 E-value=1.9e-10 Score=125.22 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=101.5
Q ss_pred cCCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEe---CCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCC
Q 013729 3 VNDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVA---KSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD 78 (437)
Q Consensus 3 v~s~~e~~~~a~~~-gyPvvvKP~~~g~gg~Gv~~v---~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~ 78 (437)
+.+.+++.+.++++ |||+||||..++ +|+||.++ ++.+++.+++..+......++|||||+| +|+++.++.
T Consensus 509 ~~~~e~a~~~~~~~~g~PvVVKP~~g~-~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~G-~E~Rv~Vig--- 583 (752)
T PRK02471 509 FTSLEEALADYSLFADKAIVVKPKSTN-FGLGISIFKEPASLEDYEKALEIAFREDSSVLVEEFIVG-TEYRFFVLD--- 583 (752)
T ss_pred EcCHHHHHHHHHHhcCCCEEEEECCCC-CcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEEEecccC-CEEEEEEEC---
Confidence 46788888877764 899999998766 89999986 4688999988877655566999999997 999998772
Q ss_pred CceEEeeee--eeEEec----------------------------------------------------CceEE------
Q 013729 79 KSILCYPVV--ETIHKE----------------------------------------------------NICHI------ 98 (437)
Q Consensus 79 G~~~~~~~~--e~~~~~----------------------------------------------------g~~~~------ 98 (437)
|+++..-.. -++.-+ |....
T Consensus 584 gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~N 663 (752)
T PRK02471 584 GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSN 663 (752)
T ss_pred CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCc
Confidence 332211000 000000 00000
Q ss_pred ---EEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC-----C-C--cEEEEEEcCCCCCCCC
Q 013729 99 ---VKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-----N-G--QILLNEVAPRPHNSGH 156 (437)
Q Consensus 99 ---~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~-----d-g--~~~viEiNpR~~~sg~ 156 (437)
.-.+..+++.+.....++|.++++++|+. +++||+++.+ + . ...|+|+|.+|+-..|
T Consensus 664 lstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l~mH 731 (752)
T PRK02471 664 ISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIPDLTQPASPEHPNYGIIELNFNPAMYMH 731 (752)
T ss_pred cCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeCCCcccccccCCCeEEEEecCCCchhhc
Confidence 00011246677778899999999999975 8889999854 0 1 4678999999985333
No 86
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.18 E-value=2.8e-10 Score=111.95 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=93.2
Q ss_pred cCCHHHHH---HHHHhhCCcEEEEecCC--CCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CCeEEEEEEEEc
Q 013729 3 VNDLESAR---RAGKQFGYPLMVKSKRL--AYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~---~~a~~~gyPvvvKP~~~--g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~-g~~E~sv~~~~d 76 (437)
+.+.+.+. .....+|||+|+||..+ .+.|++|.++.++++|.. ...+ +++||||+ +++.+.|.++.|
T Consensus 135 ~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~-----l~~p--~~lQEfVnh~g~d~RVfVvGd 207 (328)
T PLN02941 135 VYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSK-----LEPP--LVLQEFVNHGGVLFKVYVVGD 207 (328)
T ss_pred EcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecCHHHHHh-----cCCc--EEEEEecCCCCEEEEEEEECC
Confidence 34444433 34467999999999774 237999999999998876 2335 99999997 468999988854
Q ss_pred CCCceEE-eeeee-eEE------ecCceE-------------EE---EeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEE
Q 013729 77 RDKSILC-YPVVE-TIH------KENICH-------------IV---KAPAAVPWKISELATDVAHKAVSSLEGAGIFAV 132 (437)
Q Consensus 77 ~~G~~~~-~~~~e-~~~------~~g~~~-------------~~---~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~v 132 (437)
++.. +.... ++. ..|... .. .-|........+++.+++.++.++||. +++++
T Consensus 208 ---~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl-~l~Gv 283 (328)
T PLN02941 208 ---YVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGL-RLFNF 283 (328)
T ss_pred ---EEEEEEecCCcccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCC-ceEEE
Confidence 2211 11111 111 001000 00 001111112234689999999999998 69999
Q ss_pred EEEEeCC--CcEEEEEEcCCCCCCCCc
Q 013729 133 ELFWTNN--GQILLNEVAPRPHNSGHH 157 (437)
Q Consensus 133 e~~~~~d--g~~~viEiNpR~~~sg~~ 157 (437)
|++.+.+ +.++|+|||.-|+=-+..
T Consensus 284 DvI~~~~~~~~~~VidVN~fP~~k~~p 310 (328)
T PLN02941 284 DMIREHGTGDRYYVIDINYFPGYAKMP 310 (328)
T ss_pred EEEeecCCCCceEEEEecCCCccccCC
Confidence 9998863 468999999999844443
No 87
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.15 E-value=3.2e-11 Score=113.09 Aligned_cols=139 Identities=16% Similarity=0.194 Sum_probs=90.5
Q ss_pred HHHHHHHhhCCcEEEEecCCCC----CCcCeEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCCeE--EEEEEEEcCCC
Q 013729 8 SARRAGKQFGYPLMVKSKRLAY----DGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKE--LAVIVVRGRDK 79 (437)
Q Consensus 8 e~~~~a~~~gyPvvvKP~~~g~----gg~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~I~g~~E--~sv~~~~d~~G 79 (437)
+++..+.++-||+|+||..+++ +-.-.+.+.|.+|+..++.++. .++++++||+||+|+-| ++.-++-+ +|
T Consensus 138 ~~d~~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~-~g 216 (415)
T COG3919 138 EIDTLVDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWD-KG 216 (415)
T ss_pred hhhhhhhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHh-CC
Confidence 3445566889999999965431 1123466788899988887653 34677999999998544 44434433 33
Q ss_pred ceE-Eeeeee--eEEec-Cce-EEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC-CCcEEEEEEcCCCCC
Q 013729 80 SIL-CYPVVE--TIHKE-NIC-HIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHN 153 (437)
Q Consensus 80 ~~~-~~~~~e--~~~~~-g~~-~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~-dg~~~viEiNpR~~~ 153 (437)
+-+ .+.... ....+ |.. ..... .+ .+++.+.++++++.+++.|+.++||++|+ ||.+.++|||||+++
T Consensus 217 ~pvaeftarr~rqyPvdfgytst~vev----vD--n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~ 290 (415)
T COG3919 217 HPVAEFTARRLRQYPVDFGYTSTVVEV----VD--NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWR 290 (415)
T ss_pred CchhhhhcchhhcCCcccccccEEEEe----cC--cHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcc
Confidence 322 110000 00001 111 11222 22 45688899999999999999999999987 788999999999985
No 88
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.15 E-value=1.4e-10 Score=106.73 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=83.2
Q ss_pred cEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeee-EEecCc-e
Q 013729 19 PLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVET-IHKENI-C 96 (437)
Q Consensus 19 PvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~-~~~~g~-~ 96 (437)
-.|+||.++ +||.|+....+..++ .++||||+| .+.||... ++. .+......+. +.-.+. .
T Consensus 140 k~ViKp~dg-Cgge~i~~~~~~pd~-------------~i~qEfIeG-~~lSVSL~-~GE-kv~pLsvNrQfi~~~~~~~ 202 (307)
T COG1821 140 KYVIKPADG-CGGEGILFGRDFPDI-------------EIAQEFIEG-EHLSVSLS-VGE-KVLPLSVNRQFIIFAGSEL 202 (307)
T ss_pred eEEeccccc-CCcceeeccCCCcch-------------hhHHHhcCC-cceEEEEe-cCC-ccccceechhhhhhcccee
Confidence 379999665 699999887765552 689999997 99999844 322 2333333221 111111 1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHcC-CceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 97 HIVKAPAAVPWKISELATDVAHKAVSSLE-GAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 97 ~~~~~P~~l~~~~~~~i~~~a~~i~~alg-~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
.+.-.+.+.+.++.+++.+.|.+..+.++ ++|.+++|+++. | .+|++|||||+.-
T Consensus 203 ~y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D-~pYvIEINpR~TT 258 (307)
T COG1821 203 VYNGGRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-D-EPYVIEINPRPTT 258 (307)
T ss_pred eeccCcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec-C-CcEEEEecCCCCc
Confidence 22224666788999999999999999995 889999999996 4 5999999999974
No 89
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.15 E-value=4.3e-09 Score=101.21 Aligned_cols=149 Identities=23% Similarity=0.299 Sum_probs=102.5
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeC----------------------CHHHHHHHHHHhcCCCCcEEEe
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAK----------------------SEEELSSAITALGGFDRGLYVE 60 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~----------------------~~~el~~~~~~~~~~~~~~lvE 60 (437)
+.+.+++.+++.+.+ -|+|||..++ .|+||..+. +.+++...+...... ..+|||
T Consensus 42 ~~~~~~l~~~L~~y~-~vylKP~~Gs-~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~yIiQ 118 (262)
T PF14398_consen 42 LTSFEDLREMLNKYK-SVYLKPDNGS-KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGK-RRYIIQ 118 (262)
T ss_pred cCCHHHHHHHHHHCC-EEEEEeCCCC-CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCC-CcEEEe
Confidence 467899999999887 4999997765 899987664 456677666654332 359999
Q ss_pred eccCC----Ce--EEEEEEEEcCCCceEEeeeeeeEEecCceE------EEEeCCC--C-----CHHHHHHHHHHHHHHH
Q 013729 61 KWAPF----VK--ELAVIVVRGRDKSILCYPVVETIHKENICH------IVKAPAA--V-----PWKISELATDVAHKAV 121 (437)
Q Consensus 61 e~I~g----~~--E~sv~~~~d~~G~~~~~~~~e~~~~~g~~~------~~~~P~~--l-----~~~~~~~i~~~a~~i~ 121 (437)
+.|+- ++ ++.+.+..+.+|++.+.+..-.+-..|... +...|.. + .....++|.+++..++
T Consensus 119 q~I~l~~~~gr~fD~RvlvqK~~~G~W~vtg~~~Rva~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia 198 (262)
T PF14398_consen 119 QGIPLATYDGRPFDFRVLVQKNGSGKWQVTGIVARVAKPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIA 198 (262)
T ss_pred CCccccccCCCeEEEEEEEEECCCCCEEEEEEEEEEcCCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99983 23 566667778888876655442221111111 1111211 2 2346677777777777
Q ss_pred HHc----CC-ceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 122 SSL----EG-AGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 122 ~al----g~-~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
+.| +. .|-+++|+.+|.+|++|++|||.+|+..
T Consensus 199 ~~le~~~~~~~gElGiDl~iD~~g~iWliEvN~kP~~~ 236 (262)
T PF14398_consen 199 QALEKHFGGHLGELGIDLGIDKNGKIWLIEVNSKPGKF 236 (262)
T ss_pred HHHHHhcCCceeEEEEEEEEcCCCCEEEEEEeCCCCcc
Confidence 766 55 4789999999999999999999999853
No 90
>PRK12458 glutathione synthetase; Provisional
Probab=99.02 E-value=4.5e-09 Score=104.82 Aligned_cols=156 Identities=12% Similarity=0.120 Sum_probs=95.4
Q ss_pred cCCHHHHHHHHHhhCCc-EEEEecCCCCCCcCeEEeCCHHH--HHHHHHHhcCCCCcEEEeeccCCC--eEEEEEEEEcC
Q 013729 3 VNDLESARRAGKQFGYP-LMVKSKRLAYDGRGNAVAKSEEE--LSSAITALGGFDRGLYVEKWAPFV--KELAVIVVRGR 77 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyP-vvvKP~~~g~gg~Gv~~v~~~~e--l~~~~~~~~~~~~~~lvEe~I~g~--~E~sv~~~~d~ 77 (437)
..+.+++.++++++++| +|+||..++ +|+||+++++.++ +...++.+.. .+.+++|+||++. .++.+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~pvVvKPl~G~-gG~gV~~v~~~~~~~~~~ile~~~~-~~~~ivQeyI~~~~~gDiRv~vv--- 221 (338)
T PRK12458 147 SRNKEYIREFLEESPGDKMILKPLQGS-GGQGVFLIEKSAQSNLNQILEFYSG-DGYVIAQEYLPGAEEGDVRILLL--- 221 (338)
T ss_pred eCCHHHHHHHHHHcCCCeEEEEECCCC-CccCeEEEecCChhhHHHHHHHHhh-CCCEEEEEcccCCCCCCEEEEEE---
Confidence 35778999999999775 999997765 9999999987664 5555554432 2349999999852 46666655
Q ss_pred CCceE----EeeeeeeEEecCce------EEEEeCCCCCHHHHHHHHHHHHHHHHHc---CCceEEEEEEEEeCCCcEEE
Q 013729 78 DKSIL----CYPVVETIHKENIC------HIVKAPAAVPWKISELATDVAHKAVSSL---EGAGIFAVELFWTNNGQILL 144 (437)
Q Consensus 78 ~G~~~----~~~~~e~~~~~g~~------~~~~~P~~l~~~~~~~i~~~a~~i~~al---g~~G~~~ve~~~~~dg~~~v 144 (437)
+|+++ .++........++. .....+..++++ +++++.++...| |+ .+++||++ .+ ++
T Consensus 222 ~g~~v~~~g~~~a~~R~~~~~d~RsN~~~Gg~~~~~~l~~~----~~~ia~~~~~~l~~~GL-~~~gVDli---~~--~l 291 (338)
T PRK12458 222 NGEPLERDGHYAAMRRVPAGGDVRSNVHAGGSVVKHTLTKE----ELELCEAIRPKLVRDGL-FFVGLDIV---GD--KL 291 (338)
T ss_pred CCEEEeeccceeEEEEecCCCCeeecccCCCcccCcCCCHH----HHHHHHHHHHHHhhcCC-eEEeEEEE---CC--EE
Confidence 55655 01111111111111 112345557765 455666665555 44 47889986 22 68
Q ss_pred EEEcCCCCCCCCce-eeeccccHHHHHHHHH
Q 013729 145 NEVAPRPHNSGHHT-IESCYTSQFEQHMRAV 174 (437)
Q Consensus 145 iEiNpR~~~sg~~~-~~~~~~~~~~~~~~~a 174 (437)
+|||++..+ |... ...+++|.....++.+
T Consensus 292 ~EIN~~sp~-g~~~~~~~~g~d~a~~i~~~i 321 (338)
T PRK12458 292 VEVNVFSPG-GLTRINKLNKIDFVEDIIEAL 321 (338)
T ss_pred EEEeCCCcc-hHHHHHHHhCCCHHHHHHHHH
Confidence 899998542 3322 3345677666655543
No 91
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=98.92 E-value=4.4e-08 Score=95.87 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 108 KISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 108 ~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
+..+++.+++.++.+++|+ |++++|++++.++.+||+|+|+.|+-+
T Consensus 228 p~~~el~~la~~A~~~~g~-~~~GvDii~~~~~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 228 PHWERLLELAASCWELTGL-GYMGVDMVLDKEEGPLVLELNARPGLA 273 (317)
T ss_pred hhHHHHHHHHHHHHHhcCC-CeEEEEEEEeCCCCEEEEEeCCCCCCC
Confidence 5567899999999999998 999999999877779999999999843
No 92
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.83 E-value=2.1e-07 Score=91.93 Aligned_cols=152 Identities=12% Similarity=0.112 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCC-HHHHHHHHH---HhcCCCCcEEEeeccCC--CeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKS-EEELSSAIT---ALGGFDRGLYVEKWAPF--VKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~-~~el~~~~~---~~~~~~~~~lvEe~I~g--~~E~sv~~~~d 76 (437)
..+.+++.++++++| |+|+||..++ +|+|++++.+ ..++....+ .....+ +++|+||+. ..++.+.++
T Consensus 140 ~~~~~~~~~~~~~~g-~vVvKPl~G~-~G~gv~~v~~~~~~~~~~~~~~~~~~~~~--~~vQ~yI~~~~~~D~Rv~vv-- 213 (312)
T TIGR01380 140 TRDKAEIRAFLAEHG-DIVLKPLDGM-GGEGIFRLDPGDPNFNSILETMTQRGREP--VMAQRYLPEIKEGDKRILLI-- 213 (312)
T ss_pred eCCHHHHHHHHHHcC-CEEEEECCCC-CCceEEEEcCCCccHHHHHHHHHhccCCc--EEEEeccccccCCCEEEEEE--
Confidence 358889999999998 9999998765 9999999975 333433333 222334 999999983 368888877
Q ss_pred CCCceEEeeeee-----eEEecCceEEEEeCCCCCHHHHHHHHHHHHHHH---HHcCCceEEEEEEEEeCCCcEEEEEEc
Q 013729 77 RDKSILCYPVVE-----TIHKENICHIVKAPAAVPWKISELATDVAHKAV---SSLEGAGIFAVELFWTNNGQILLNEVA 148 (437)
Q Consensus 77 ~~G~~~~~~~~e-----~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~---~alg~~G~~~ve~~~~~dg~~~viEiN 148 (437)
+|+++.+.... .+..+-.......|..++++ ..+++.+++ +++|+ .+.+||++ | .||+|||
T Consensus 214 -~g~vv~~ai~R~~~~gd~r~N~~~Gg~~~~~~l~~e----~~~ia~~~~~~~~~~gl-~~agVDii----g-~~v~EvN 282 (312)
T TIGR01380 214 -DGEPIGAAVARIPAGGEFRGNLAVGGRGEATELSER----DREICADVAPELKRRGL-LFVGIDVI----G-GYLTEVN 282 (312)
T ss_pred -CCeEEEEEEEecCCCCCccccccCCceeeccCCCHH----HHHHHHHHHHHHHhcCC-cEEEEEEe----C-CEEEEEe
Confidence 45654322211 01111001123456667775 344555554 55565 57889987 3 4799999
Q ss_pred CC-CCCCCCce-eeeccccHHHHHHHH
Q 013729 149 PR-PHNSGHHT-IESCYTSQFEQHMRA 173 (437)
Q Consensus 149 pR-~~~sg~~~-~~~~~~~~~~~~~~~ 173 (437)
+. |. +... ...++++..+..++.
T Consensus 283 ~~~p~--~~~~~~~~~g~~ia~~i~d~ 307 (312)
T TIGR01380 283 VTSPT--GIREIDRQKGVNIAGMLWDA 307 (312)
T ss_pred cCCcc--hHHHHHhhhCCCHHHHHHHH
Confidence 86 32 3332 234567766655543
No 93
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=98.79 E-value=2.2e-08 Score=86.90 Aligned_cols=121 Identities=15% Similarity=0.107 Sum_probs=91.8
Q ss_pred EEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChhHHHHhHhhhhhc-CCeEEEEecc---ccccccCcccCCC
Q 013729 273 GIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHER-GIEIIIAGAG---GAAHLPGMVAART 346 (437)
Q Consensus 273 ~ii~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~hr~p~~~~~~~~~~~~~-g~~v~i~~ag---~~~~l~~~i~~~~ 346 (437)
++++.+++||+.+.+.++.|.++ ||++.+| .+ |.+|+ ++. |++|..+..+ +.+++.++|....
T Consensus 7 v~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~AT----~g----Ta~~L---~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~ 75 (142)
T PRK05234 7 IALIAHDHKKDDLVAWVKAHKDLLEQHELYAT----GT----TGGLI---QEATGLDVTRLLSGPLGGDQQIGALIAEGK 75 (142)
T ss_pred EEEEEeccchHHHHHHHHHHHHHhcCCEEEEe----Ch----HHHHH---HhccCCeeEEEEcCCCCCchhHHHHHHcCc
Confidence 38899999999999999999999 9999999 56 78888 456 9988766655 6789999999999
Q ss_pred CCCEEecc--CC-CC-CCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHccCChHHHHHHHHHH
Q 013729 347 PLPVIGVP--VR-AS-ALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYM 412 (437)
Q Consensus 347 ~~pVi~~p--~~-~~-~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~~~~~~~~~~~~~~ 412 (437)
...|||+| .. .. ..||.. +|+.++-.||||+|-. +++.|.+.| +.. |..+++-.-+|.
T Consensus 76 i~lVInt~dp~~~~~~~~D~~~--IRR~Av~~~IP~~T~l--~tA~a~~~a---l~~-~~~~~~~~~~~~ 137 (142)
T PRK05234 76 IDMLIFFRDPLTAQPHDPDVKA--LLRLADVWNIPVATNR--ATADFLISS---LLF-DDEVEILIPDYQ 137 (142)
T ss_pred eeEEEEecCCCCCCcccchHHH--HHHHHHHcCCCEEcCH--HHHHHHHHH---Hhc-ccchhhcccchh
Confidence 99999999 42 22 335555 9999999999999532 244444444 444 666555444443
No 94
>PRK05246 glutathione synthetase; Provisional
Probab=98.76 E-value=9.6e-08 Score=94.57 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=94.1
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCC-HHHHHHHHHHhcC-CCCcEEEeeccCC--CeEEEEEEEEcCC
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKS-EEELSSAITALGG-FDRGLYVEKWAPF--VKELAVIVVRGRD 78 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~-~~el~~~~~~~~~-~~~~~lvEe~I~g--~~E~sv~~~~d~~ 78 (437)
..+.+++.++++++| |+|+||..++ +|+|++++.. ..++....+.+.. ....+++|+||+. ..++.+.++ +
T Consensus 141 ~~~~~~~~~~~~~~~-~vVlKP~~G~-~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv---~ 215 (316)
T PRK05246 141 TRDKAEIRAFRAEHG-DIILKPLDGM-GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLV---D 215 (316)
T ss_pred eCCHHHHHHHHHHCC-CEEEEECCCC-CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEE---C
Confidence 457889999999998 9999998765 9999999954 4444433333321 1234999999975 367888776 4
Q ss_pred CceEEeeeeee----EEecCc-eEEEEeCCCCCHHHHHHHHHHHHHHH---HHcCCceEEEEEEEEeCCCcEEEEEEcCC
Q 013729 79 KSILCYPVVET----IHKENI-CHIVKAPAAVPWKISELATDVAHKAV---SSLEGAGIFAVELFWTNNGQILLNEVAPR 150 (437)
Q Consensus 79 G~~~~~~~~e~----~~~~g~-~~~~~~P~~l~~~~~~~i~~~a~~i~---~alg~~G~~~ve~~~~~dg~~~viEiNpR 150 (437)
|+++.+..... -.+.+. ..+...|..++++ ..+++.+++ +.+|+ ..++||++ |. ||+|||..
T Consensus 216 g~vv~~a~~R~~~~~~~rtN~~~Gg~~~~~~l~~~----~~~ia~~~~~~l~~~gl-~~~GVDli----~~-~l~EvN~~ 285 (316)
T PRK05246 216 GEPVGYALARIPAGGETRGNLAAGGRGEATPLTER----DREICAAIGPELKERGL-IFVGIDVI----GD-YLTEINVT 285 (316)
T ss_pred CEEhhheeEecCCCCCcccCccCCceEeccCCCHH----HHHHHHHHHHHHHHhCC-CEEEEEEe----CC-EEEEEeCC
Confidence 56443111110 011111 1123456667765 345555555 45454 47889987 22 79999986
Q ss_pred -CCCCCCcee-eeccccHHHHHHHHH
Q 013729 151 -PHNSGHHTI-ESCYTSQFEQHMRAV 174 (437)
Q Consensus 151 -~~~sg~~~~-~~~~~~~~~~~~~~a 174 (437)
|+ +...+ ..+++|..+..++.+
T Consensus 286 ~p~--~~~~~~~~tg~~ia~~i~~~~ 309 (316)
T PRK05246 286 SPT--GIREIERLTGVDIAGMLWDAI 309 (316)
T ss_pred Cch--HHHHHHHHhCCCHHHHHHHHH
Confidence 44 33333 345677766665544
No 95
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=98.66 E-value=6.7e-08 Score=80.75 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=81.0
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecc---ccccccCcccC-CCCCC
Q 013729 274 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG---GAAHLPGMVAA-RTPLP 349 (437)
Q Consensus 274 ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag---~~~~l~~~i~~-~~~~p 349 (437)
+++.+++|++.+.+.++.|..+||++.+| .+ |.+|+ ++.|++|..+.++ +.+++.++|.. .....
T Consensus 3 ~isv~d~~K~~~~~~a~~l~~~G~~i~AT----~g----Ta~~L---~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idl 71 (112)
T cd00532 3 FLSVSDHVKAMLVDLAPKLSSDGFPLFAT----GG----TSRVL---ADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDV 71 (112)
T ss_pred EEEEEcccHHHHHHHHHHHHHCCCEEEEC----cH----HHHHH---HHcCCceEEEEecCCCCCcHHHHHHhCCCCEEE
Confidence 78889999999999999999999999999 55 89998 4579998887663 66899999999 99999
Q ss_pred EEeccCCC----CCCCChhhHHHhhhCCCCCceEE
Q 013729 350 VIGVPVRA----SALDGLDSLLSIVQMPRGVPVAT 380 (437)
Q Consensus 350 Vi~~p~~~----~~~~g~~~l~~~~~~~~gvp~~t 380 (437)
|||+|.+. ...+|.. +|+.+.-.||||+|
T Consensus 72 VIn~~~~~~~~~~~~dg~~--iRR~A~~~~Ip~~T 104 (112)
T cd00532 72 VINLRDPRRDRCTDEDGTA--LLRLARLYKIPVTT 104 (112)
T ss_pred EEEcCCCCcccccCCChHH--HHHHHHHcCCCEEE
Confidence 99999742 3456766 99999999999996
No 96
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=98.58 E-value=7.6e-08 Score=80.72 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=79.0
Q ss_pred EEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChhHHHHhHhhhhh-cCCeEEEE-e--ccccccccCcccCCCCC
Q 013729 275 IMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHE-RGIEIIIA-G--AGGAAHLPGMVAARTPL 348 (437)
Q Consensus 275 i~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~hr~p~~~~~~~~~~~~-~g~~v~i~-~--ag~~~~l~~~i~~~~~~ 348 (437)
+..+++|++.+.+.++.+.++ ||++.+| .+ |.+|++ + .|++|..+ . .|+.+++.++|...+..
T Consensus 4 l~a~d~dK~~~~~~a~~~~~ll~Gf~i~AT----~g----Ta~~L~---~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~ 72 (115)
T cd01422 4 LIAHDNKKEDLVEFVKQHQELLSRHRLVAT----GT----TGLLIQ---EATGLTVNRMKSGPLGGDQQIGALIAEGEID 72 (115)
T ss_pred EEecccchHHHHHHHHHHHHHhcCCEEEEe----ch----HHHHHH---HhhCCcEEEEecCCCCchhHHHHHHHcCcee
Confidence 456899999999999999999 9999999 56 888984 4 68987766 2 46778999999999999
Q ss_pred CEEeccCC-C--C-CCCChhhHHHhhhCCCCCceEE
Q 013729 349 PVIGVPVR-A--S-ALDGLDSLLSIVQMPRGVPVAT 380 (437)
Q Consensus 349 pVi~~p~~-~--~-~~~g~~~l~~~~~~~~gvp~~t 380 (437)
.|||+|.+ + . ..||.. +|+.++..+|||+|
T Consensus 73 ~VInt~~~~~~~~~~~dg~~--iRr~a~~~~Ip~~T 106 (115)
T cd01422 73 AVIFFRDPLTAQPHEPDVKA--LLRLCDVYNIPLAT 106 (115)
T ss_pred EEEEcCCCCCCCcccccHHH--HHHHHHHcCCCEEE
Confidence 99999974 2 2 456776 99999999999995
No 97
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.58 E-value=1.5e-06 Score=88.54 Aligned_cols=77 Identities=29% Similarity=0.323 Sum_probs=61.5
Q ss_pred ccCCHHHHHHHHHhhC-CcEEEEecC--CCCCC-cCeEEeCCHHHHHHHHHHhcCC-------C------CcEEEeeccC
Q 013729 2 EVNDLESARRAGKQFG-YPLMVKSKR--LAYDG-RGNAVAKSEEELSSAITALGGF-------D------RGLYVEKWAP 64 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~g-yPvvvKP~~--~g~gg-~Gv~~v~~~~el~~~~~~~~~~-------~------~~~lvEe~I~ 64 (437)
.+++.+|+.++++++| ||+|+||.. ++.|+ -||.+++|.+|+.++++.+... + ..++||+|++
T Consensus 24 ~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~ 103 (386)
T TIGR01016 24 VATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATD 103 (386)
T ss_pred eeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCCEeeEEEEEECcc
Confidence 3578999999999999 999999972 23233 3899999999999998775431 0 3599999999
Q ss_pred CCeEEEEEEEEcCC
Q 013729 65 FVKELAVIVVRGRD 78 (437)
Q Consensus 65 g~~E~sv~~~~d~~ 78 (437)
+++|+.+.++.|..
T Consensus 104 ~g~E~~v~i~~d~~ 117 (386)
T TIGR01016 104 IDKEYYLSIVIDRS 117 (386)
T ss_pred CCceEEEEEEEcCC
Confidence 67999999998753
No 98
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.49 E-value=2e-06 Score=77.19 Aligned_cols=134 Identities=17% Similarity=0.212 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCC-HHHHHHHHHHhcC-CCCcEEEeeccCC--CeEEEEEEEEcCC
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKS-EEELSSAITALGG-FDRGLYVEKWAPF--VKELAVIVVRGRD 78 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~-~~el~~~~~~~~~-~~~~~lvEe~I~g--~~E~sv~~~~d~~ 78 (437)
.++.+++.++.++.+. +|+||..+. ||+||+++.. ...+...++.+.. ....+|+|+|++. .-|.++.++ +
T Consensus 18 s~~~~~i~~f~~~~~~-~VlKPl~g~-gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~GDkRii~~---n 92 (173)
T PF02955_consen 18 SRDKEEIRAFIEEHGD-IVLKPLDGM-GGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKEGDKRIILF---N 92 (173)
T ss_dssp ES-HHHHHHHHHHHSS-EEEEESS---TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG-EEEEEEE---T
T ss_pred ECCHHHHHHHHHHCCC-EEEEECCCC-CCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccCCCEEEEEE---C
Confidence 3578999999999999 999997765 9999999987 4456666665532 2245999999994 237888777 5
Q ss_pred CceEEeeeeeeEEecCceE------EEEeCCCCCHHHHHHHHHHHHHHHHHcCCce--EEEEEEEEeCCCcEEEEEEcCC
Q 013729 79 KSILCYPVVETIHKENICH------IVKAPAAVPWKISELATDVAHKAVSSLEGAG--IFAVELFWTNNGQILLNEVAPR 150 (437)
Q Consensus 79 G~~~~~~~~e~~~~~g~~~------~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G--~~~ve~~~~~dg~~~viEiNpR 150 (437)
|+.... ...+...|+.. ....+..++++. .++++++...|.-+| +.++|++ .+ |+.|||--
T Consensus 93 G~~~~a--v~R~P~~gd~R~N~~~Gg~~~~~~lt~~e----~~i~~~i~~~L~~~Gl~f~GiDvi---g~--~l~EiNvt 161 (173)
T PF02955_consen 93 GEPSHA--VRRIPAKGDFRSNLAAGGSAEPAELTERE----REICEQIGPKLREDGLLFVGIDVI---GD--KLTEINVT 161 (173)
T ss_dssp TEE-SE--EEEE--SS-S---GGGTSCEEEEE--HHH----HHHHHHHHHHHHHTT--EEEEEEE---TT--EEEEEE-S
T ss_pred CEEhHH--eecCCCCCCceeeeccCCceeecCCCHHH----HHHHHHHHHHHhhcCcEEEEEecc---cc--ceEEEecc
Confidence 664321 11111122211 112234456554 445555555553334 5678865 23 78999975
Q ss_pred CC
Q 013729 151 PH 152 (437)
Q Consensus 151 ~~ 152 (437)
-.
T Consensus 162 sp 163 (173)
T PF02955_consen 162 SP 163 (173)
T ss_dssp S-
T ss_pred Cc
Confidence 43
No 99
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=98.49 E-value=3.9e-07 Score=75.85 Aligned_cols=94 Identities=21% Similarity=0.275 Sum_probs=79.2
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec--cccccccCcccCCCCCCEE
Q 013729 274 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVI 351 (437)
Q Consensus 274 ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVi 351 (437)
+++.+++|++.+.+.++.|.++||++.+| -+ |.+|+ ++.|++|..+.. ++.+++.+++.......||
T Consensus 4 l~s~~~~~k~~~~~~~~~l~~~G~~l~aT----~g----T~~~l---~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vI 72 (110)
T cd01424 4 FISVADRDKPEAVEIAKRLAELGFKLVAT----EG----TAKYL---QEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVI 72 (110)
T ss_pred EEEEEcCcHhHHHHHHHHHHHCCCEEEEc----hH----HHHHH---HHcCCeEEEEeecCCCchhHHHHHHcCCeEEEE
Confidence 78889999999999999999999999998 44 88888 457999776654 5678999999999999999
Q ss_pred eccCCCC-CCCChhhHHHhhhCCCCCceEE
Q 013729 352 GVPVRAS-ALDGLDSLLSIVQMPRGVPVAT 380 (437)
Q Consensus 352 ~~p~~~~-~~~g~~~l~~~~~~~~gvp~~t 380 (437)
|+|.... ..+|.. +|+.++..||||+|
T Consensus 73 n~~~~~~~~~~~~~--iRR~Av~~~ipl~T 100 (110)
T cd01424 73 NTPSGKRAIRDGFS--IRRAALEYKVPYFT 100 (110)
T ss_pred ECCCCCccCccHHH--HHHHHHHhCCCEEe
Confidence 9987422 234554 99999999999996
No 100
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.39 E-value=1.4e-05 Score=81.46 Aligned_cols=81 Identities=27% Similarity=0.314 Sum_probs=65.0
Q ss_pred ccCCHHHHHHHHHhh-CCcEEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcCC---------C----CcEEEeecc
Q 013729 2 EVNDLESARRAGKQF-GYPLMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF---------D----RGLYVEKWA 63 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~-gyPvvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~~---------~----~~~lvEe~I 63 (437)
.++|.+|+.++++++ |||+|+||... .+|+ ||.+.+|.+|+.++++.+... . ..++||+++
T Consensus 24 ~~~~~~ea~~~a~~i~g~PvVvK~~~~-~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~ 102 (388)
T PRK00696 24 VATTPEEAVEAAEELGGGVWVVKAQVH-AGGRGKAGGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGA 102 (388)
T ss_pred eeCCHHHHHHHHHHcCCCcEEEEEeeC-CCCCcccccEEEcCCHHHHHHHHHHhhccceeeeccCCCCCEEeEEEEEecc
Confidence 367999999999999 99999999643 2455 999999999999999876421 1 258999999
Q ss_pred CCCeEEEEEEEEcCC-CceEE
Q 013729 64 PFVKELAVIVVRGRD-KSILC 83 (437)
Q Consensus 64 ~g~~E~sv~~~~d~~-G~~~~ 83 (437)
+++.|+.+.+..|.. |.++.
T Consensus 103 ~~~~E~~vg~~~D~~fgpvv~ 123 (388)
T PRK00696 103 DIAKEYYLSIVLDRATRRVVF 123 (388)
T ss_pred CCCceEEEEEEEcCCCCceEE
Confidence 977999999999864 55543
No 101
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=98.38 E-value=4.6e-07 Score=76.14 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=78.5
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec--c----ccccccCcccCCCC
Q 013729 274 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA--G----GAAHLPGMVAARTP 347 (437)
Q Consensus 274 ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a--g----~~~~l~~~i~~~~~ 347 (437)
+++.++.|++.+.+.++.|.++||++.+| ++ |.+|+ ++.|++|..+.. + ..+++.++|.....
T Consensus 4 lisv~~~dk~~~~~~a~~l~~~G~~i~aT----~g----Ta~~L---~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~i 72 (116)
T cd01423 4 LISIGSYSKPELLPTAQKLSKLGYKLYAT----EG----TADFL---LENGIPVTPVAWPSEEPQNDKPSLRELLAEGKI 72 (116)
T ss_pred EEecCcccchhHHHHHHHHHHCCCEEEEc----cH----HHHHH---HHcCCCceEeeeccCCCCCCchhHHHHHHcCCc
Confidence 78888889999999999999999999988 67 78888 467898877743 1 23789999999999
Q ss_pred CCEEeccCCCC---CCCChhhHHHhhhCCCCCceEE
Q 013729 348 LPVIGVPVRAS---ALDGLDSLLSIVQMPRGVPVAT 380 (437)
Q Consensus 348 ~pVi~~p~~~~---~~~g~~~l~~~~~~~~gvp~~t 380 (437)
..|||+|.... ..+|.. +|+.++..||||.|
T Consensus 73 dlVIn~~~~~~~~~~~~~~~--iRr~Av~~~ip~iT 106 (116)
T cd01423 73 DLVINLPSNRGKRVLDNDYV--MRRAADDFAVPLIT 106 (116)
T ss_pred eEEEECCCCCCCccccCcEe--eehhhHhhCCcccc
Confidence 99999997533 345666 99999999999985
No 102
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.30 E-value=1.6e-05 Score=77.43 Aligned_cols=145 Identities=16% Similarity=0.233 Sum_probs=91.7
Q ss_pred cCCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEeCCHHH---------HHHHHHHhcCCCCcEEEeeccCCCe-----
Q 013729 3 VNDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEEE---------LSSAITALGGFDRGLYVEKWAPFVK----- 67 (437)
Q Consensus 3 v~s~~e~~~~a~~~-gyPvvvKP~~~g~gg~Gv~~v~~~~e---------l~~~~~~~~~~~~~~lvEe~I~g~~----- 67 (437)
..+.+++.++++.. ..++++||+.++ +|+|+.++...+. +.+........ .+|||++|....
T Consensus 58 ~~~~~~l~~~l~~~~~~~~viKP~~G~-~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~liqe~i~qh~~~~~~ 134 (285)
T PF14397_consen 58 QHSIEDLEEFLRKHAPDRFVIKPANGS-GGKGILVIDRRDGSEINRDISALYAGLESLGGK--DYLIQERIEQHPELAAL 134 (285)
T ss_pred ccCHHHHHHHHHhccCCcEEEEeCCCC-CccCEEEEEeecCcccccchhHHHHHHHhcCCc--cEEEEecccCCHHHHhh
Confidence 35788999999775 689999997654 9999999876541 22222222222 599999998411
Q ss_pred ------EEEEEEEEcCCCceEEeeee----------eeEEecCc---------e-E----------EEEeCCC------C
Q 013729 68 ------ELAVIVVRGRDKSILCYPVV----------ETIHKENI---------C-H----------IVKAPAA------V 105 (437)
Q Consensus 68 ------E~sv~~~~d~~G~~~~~~~~----------e~~~~~g~---------~-~----------~~~~P~~------l 105 (437)
-+.+..+.+. |++.+.... .+...+|. . . ...-|-+ +
T Consensus 135 ~~~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~ 213 (285)
T PF14397_consen 135 SPSSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGF 213 (285)
T ss_pred CCCCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCc
Confidence 3555566554 443221111 11111110 0 0 0011211 1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCC--CC
Q 013729 106 PWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPR--PH 152 (437)
Q Consensus 106 ~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR--~~ 152 (437)
.=...+++.+++.++.+.+...+.++.|+.+|++| +.++|.|.+ |+
T Consensus 214 ~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait~~G-p~llE~N~~~~pg 261 (285)
T PF14397_consen 214 QIPNWDEILELAKEAHRKFPGLGYIGWDVAITEDG-PVLLEGNARWDPG 261 (285)
T ss_pred cCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCC-cEEEEeeCCCCCC
Confidence 11346788999999998888789999999999999 999999999 55
No 103
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=98.29 E-value=1.6e-05 Score=76.19 Aligned_cols=137 Identities=16% Similarity=0.150 Sum_probs=95.3
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCC-------CcEEEeeccCCCeEEEEEEEEcC-CCceEEeee
Q 013729 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFD-------RGLYVEKWAPFVKELAVIVVRGR-DKSILCYPV 86 (437)
Q Consensus 15 ~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~-------~~~lvEe~I~g~~E~sv~~~~d~-~G~~~~~~~ 86 (437)
++.-|||||... .-||||-+++.|.+|+.+..+++.... ..+.|||||-| ..+.+..+... .+++=.++.
T Consensus 148 eIdr~VIVK~pg-AkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFyS~i~~~lEl~g~ 225 (361)
T COG1759 148 EIDRPVIVKLPG-AKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFYSPIKDRLELLGI 225 (361)
T ss_pred HcCCceEEecCC-ccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeeeccccCceeEeee
Confidence 355699999954 448999999999999999888764211 45899999997 55555544321 222222322
Q ss_pred eeeEEec--C--------------ceEEEE---eCCCCCHHHHHHHHHHHHHHHHHc------CCceEEEEEEEEeCCCc
Q 013729 87 VETIHKE--N--------------ICHIVK---APAAVPWKISELATDVAHKAVSSL------EGAGIFAVELFWTNNGQ 141 (437)
Q Consensus 87 ~e~~~~~--g--------------~~~~~~---~P~~l~~~~~~~i~~~a~~i~~al------g~~G~~~ve~~~~~dg~ 141 (437)
...++.+ | ..+.++ .|..+.+.++.++-+++.+++++. |+.|+|.+|.++++|=.
T Consensus 226 D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~vlRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~dl~ 305 (361)
T COG1759 226 DRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVVLRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTDDLE 305 (361)
T ss_pred eheeeccchhhccCCHHHHhhcCCCceEEEECCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecCCcc
Confidence 2222111 1 112221 366678888888888888877765 77899999999998888
Q ss_pred EEEEEEcCCCCC
Q 013729 142 ILLNEVAPRPHN 153 (437)
Q Consensus 142 ~~viEiNpR~~~ 153 (437)
+++.|+.+|.++
T Consensus 306 ~vVfevS~Ri~g 317 (361)
T COG1759 306 FVVFEVSARIVG 317 (361)
T ss_pred EEEEEEeccccC
Confidence 999999999985
No 104
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.11 E-value=2e-05 Score=76.82 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=75.8
Q ss_pred HhhCCcEEEEecC--CCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CCeEEEEEEEEcCCCceEEeeeeeeE
Q 013729 14 KQFGYPLMVKSKR--LAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRGRDKSILCYPVVETI 90 (437)
Q Consensus 14 ~~~gyPvvvKP~~--~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~-g~~E~sv~~~~d~~G~~~~~~~~e~~ 90 (437)
..+.||+|+||.. |+..+..|.++.+++.|.+. ..| +++||||. |+.-|-|-++.+ .+.+-.+.++
T Consensus 135 agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L-----~~P--~VlQeFVNHggvLfKVyVvGd----~v~~v~R~SL 203 (307)
T PF05770_consen 135 AGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDL-----KPP--CVLQEFVNHGGVLFKVYVVGD----KVFVVKRPSL 203 (307)
T ss_dssp TTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT-------SS--EEEEE----TTEEEEEEEETT----EEEEEEEE--
T ss_pred CCCcccEEeeehhhcCCccceEEEEEECHHHHhhc-----CCC--EEEEEeecCCCEEEEEEEecC----EEEEEECCCC
Confidence 3578999999976 44477899999999999763 446 99999999 567788877732 2222111111
Q ss_pred ---Eec------CceEE-------------EEe--CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC-C-CcEEE
Q 013729 91 ---HKE------NICHI-------------VKA--PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-N-GQILL 144 (437)
Q Consensus 91 ---~~~------g~~~~-------------~~~--P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~-d-g~~~v 144 (437)
... +.... ..- +........+.+.+++..+-++||+. +|++|++++. + |++||
T Consensus 204 pn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL~-LFgfDvI~~~~t~~~~~V 282 (307)
T PF05770_consen 204 PNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGLT-LFGFDVIRENGTGGRYYV 282 (307)
T ss_dssp ----SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT-S-EEEEEEEEGCCT-SSEEE
T ss_pred CCCCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCcc-eeeeEEEEEcCCCCcEEE
Confidence 100 00000 000 11111122456888999999999984 9999999875 3 57999
Q ss_pred EEEcCCCCC
Q 013729 145 NEVAPRPHN 153 (437)
Q Consensus 145 iEiNpR~~~ 153 (437)
++||.-||=
T Consensus 283 IDINyFPgY 291 (307)
T PF05770_consen 283 IDINYFPGY 291 (307)
T ss_dssp EEEEES--T
T ss_pred EEeccCCCc
Confidence 999999983
No 105
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.91 E-value=0.00012 Score=65.69 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=74.4
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeee---eeEE
Q 013729 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV---ETIH 91 (437)
Q Consensus 15 ~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~---e~~~ 91 (437)
...||+|||--. +.+|.|=.+|+|.+++.+...-+.-....+.+|.||+-..++.++-+. + +...|-.. .+..
T Consensus 48 ~~~fPvVvKvG~-~h~G~GKvkv~n~~~~qDi~sll~~~~~Y~T~EPfId~kyDirvqkIG--~-~ykA~~R~sis~nWK 123 (203)
T PF02750_consen 48 APRFPVVVKVGH-AHAGMGKVKVDNQQDFQDIASLLAITKDYATTEPFIDAKYDIRVQKIG--N-NYKAYMRTSISGNWK 123 (203)
T ss_dssp -SSSSEEEEESS--STTTTEEEE-SHHHHHHHHHHHHHHTS-EEEEE---EEEEEEEEEET--T-EEEEEEEEESSSTSS
T ss_pred CCCCCEEEEEcc-ccCceeEEEEccHHHHHHHHHHHHhcCceEEeeccccceeEEEEEEEc--C-eEEEEEEcccccccc
Confidence 357999999943 357999999999998887655432222348999999744455555552 2 33333221 1121
Q ss_pred e-cCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCC
Q 013729 92 K-ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPR 150 (437)
Q Consensus 92 ~-~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR 150 (437)
. .|.......+ ++ ++.+..+..+.+.+|.--++.+|.+..+||+-|++|+|--
T Consensus 124 ~N~gsa~lEqi~--~~----~ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds 177 (203)
T PF02750_consen 124 ANTGSAMLEQIA--MT----ERYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDS 177 (203)
T ss_dssp TTSSSEEEEEE---------HHHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-T
T ss_pred ccccchheeecC--CC----hHHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCC
Confidence 1 2333333332 33 3456677778888876679999999999999999999965
No 106
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.74 E-value=0.00023 Score=69.62 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=23.2
Q ss_pred cEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC
Q 013729 19 PLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP 64 (437)
Q Consensus 19 PvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~ 64 (437)
-.|+||..++ .|+|+.++++.+++.+. .....+.++||+||+
T Consensus 67 ~wI~KP~~~~-rG~GI~l~~~~~~i~~~---~~~~~~~~vvQkYI~ 108 (292)
T PF03133_consen 67 LWIVKPSNGS-RGRGIKLFNNLEQILRF---SKNKNQPYVVQKYIE 108 (292)
T ss_dssp -EEEEES--------EEEES-HHHHHCC---HCCTTS-EEEEE--S
T ss_pred EEEEeccccC-CCCCceecCCHHHHHHH---hhhhhhhhhhhhccC
Confidence 4899997754 89999999999888754 122335599999998
No 107
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=97.59 E-value=8.6e-05 Score=59.34 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=65.0
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEE-EEec--cccccccCcccCCCCCCEEeccCC-C--C
Q 013729 285 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEII-IAGA--GGAAHLPGMVAARTPLPVIGVPVR-A--S 358 (437)
Q Consensus 285 ~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~-i~~a--g~~~~l~~~i~~~~~~pVi~~p~~-~--~ 358 (437)
+.++++.|.++||++.+| -+ |.+|+ ++.|++|- .+.+ ++.+++..++.......|||+|.+ . .
T Consensus 2 ~~~~~~~l~~lG~~i~AT----~g----Ta~~L---~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~ 70 (90)
T smart00851 2 LVELAKRLAELGFELVAT----GG----TAKFL---REAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQP 70 (90)
T ss_pred HHHHHHHHHHCCCEEEEc----cH----HHHHH---HHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCcCccee
Confidence 456788899999999999 45 78888 46799874 4433 455678999999999999999974 2 2
Q ss_pred CCCChhhHHHhhhCCCCCceEE
Q 013729 359 ALDGLDSLLSIVQMPRGVPVAT 380 (437)
Q Consensus 359 ~~~g~~~l~~~~~~~~gvp~~t 380 (437)
..||.. +|+.+.-.||||.|
T Consensus 71 ~~d~~~--iRr~A~~~~Ip~~T 90 (90)
T smart00851 71 HEDGKA--LRRAAENIDIPGAT 90 (90)
T ss_pred ccCcHH--HHHHHHHcCCCeeC
Confidence 335665 89999999999975
No 108
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=97.48 E-value=1.4e-05 Score=64.66 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec----ccccc----ccCcccCCCCCCEEeccCC
Q 013729 285 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA----GGAAH----LPGMVAARTPLPVIGVPVR 356 (437)
Q Consensus 285 ~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a----g~~~~----l~~~i~~~~~~pVi~~p~~ 356 (437)
+.+.++.|.++||++.+| .+ |++|+ ++.|++|.-+.. +...+ +..+|..+....|||+|.+
T Consensus 2 ~~~~a~~l~~lG~~i~AT----~g----Ta~~L---~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~ 70 (95)
T PF02142_consen 2 IVPLAKRLAELGFEIYAT----EG----TAKFL---KEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYP 70 (95)
T ss_dssp HHHHHHHHHHTTSEEEEE----HH----HHHHH---HHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--T
T ss_pred HHHHHHHHHHCCCEEEEC----hH----HHHHH---HHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCC
Confidence 567889999999999999 55 89999 578999443322 32445 8889999999999999986
Q ss_pred C--CCC-CChhhHHHhhhCCCCCceEE
Q 013729 357 A--SAL-DGLDSLLSIVQMPRGVPVAT 380 (437)
Q Consensus 357 ~--~~~-~g~~~l~~~~~~~~gvp~~t 380 (437)
. ... ||.. +|+++...+|||+|
T Consensus 71 ~~~~~~~dg~~--irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 71 FSDQEHTDGYK--IRRAAVEYNIPLFT 95 (95)
T ss_dssp HHHHHTHHHHH--HHHHHHHTTSHEEC
T ss_pred CcccccCCcHH--HHHHHHHcCCCCcC
Confidence 2 223 6776 89999999999986
No 109
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=97.33 E-value=0.0026 Score=59.60 Aligned_cols=84 Identities=27% Similarity=0.327 Sum_probs=55.4
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCC----CCcCeEE-eCCHHHHHHHHHHhcC---------CCCcEEEeeccC-CC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAY----DGRGNAV-AKSEEELSSAITALGG---------FDRGLYVEKWAP-FV 66 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~----gg~Gv~~-v~~~~el~~~~~~~~~---------~~~~~lvEe~I~-g~ 66 (437)
.++|.+|+.++++++|||+++|-..-.. .--||.+ ++|+++++++++.+.. ....++||+-++ ++
T Consensus 31 ~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g 110 (222)
T PF13549_consen 31 LVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERVAAHHPGARIDGVLVQEMAPSGG 110 (222)
T ss_dssp EESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHHHHH-TT----EEEEEE------
T ss_pred EeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHHHHhCCCCccceEEEEEcccCCc
Confidence 3679999999999999999999853211 1126777 8899999999987521 124699999999 67
Q ss_pred eEEEEEEEEcCC-CceEEee
Q 013729 67 KELAVIVVRGRD-KSILCYP 85 (437)
Q Consensus 67 ~E~sv~~~~d~~-G~~~~~~ 85 (437)
.|+.+-+.+|.. |.++.++
T Consensus 111 ~El~vG~~~Dp~FGPvv~~G 130 (222)
T PF13549_consen 111 RELIVGVRRDPQFGPVVMFG 130 (222)
T ss_dssp EEEEEEEEEETTTEEEEEEE
T ss_pred EEEEEEEEECCCCCCEEEEc
Confidence 999999998753 5555544
No 110
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=97.11 E-value=0.016 Score=59.42 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=56.2
Q ss_pred ccCCHHHHHHHHHhh---CCcEEEEecCCCCCCcC-----------eEEeCCHHHHHHHHHHhcCC-------------C
Q 013729 2 EVNDLESARRAGKQF---GYPLMVKSKRLAYDGRG-----------NAVAKSEEELSSAITALGGF-------------D 54 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~---gyPvvvKP~~~g~gg~G-----------v~~v~~~~el~~~~~~~~~~-------------~ 54 (437)
.+++++|+.++++++ ++|+|+|+.... |||| |.++++ +|+.++++++.+. .
T Consensus 51 va~t~eea~~aa~~l~~~~~pvVvKaqv~~-GGRGka~hKs~~~GGV~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v 128 (422)
T PLN00124 51 AASSLDEVKKALEKMFPDEGEVVVKSQILA-GGRGLGTFKNGLKGGVHIVKK-DKAEELAGKMLGQILVTKQTGPAGKPV 128 (422)
T ss_pred eeCCHHHHHHHHHHhcccCCcEEEEEEecc-CCccccccccccCCeEEECCH-HHHHHHHHHHhccchhhcccCCCCcee
Confidence 368999999999999 699999997432 4444 667766 9999988776332 1
Q ss_pred CcEEEeeccCCCeEEEEEEEEcC
Q 013729 55 RGLYVEKWAPFVKELAVIVVRGR 77 (437)
Q Consensus 55 ~~~lvEe~I~g~~E~sv~~~~d~ 77 (437)
..++|+|.+...+|+-+.+..|.
T Consensus 129 ~~vlv~e~~~~~~E~ylgi~~Dr 151 (422)
T PLN00124 129 NKVYLCEKMSLVNEMYFAILLDR 151 (422)
T ss_pred ceEEEEEeecCCceEEEEEEecc
Confidence 35787777776789999999886
No 111
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=97.10 E-value=0.02 Score=58.42 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=63.1
Q ss_pred ccCCHHHHHHHHHhhCCc-EEEEecCC-C--CCCcCeEEeCCHHHHHHHHHHhcCC---------C----CcEEEeeccC
Q 013729 2 EVNDLESARRAGKQFGYP-LMVKSKRL-A--YDGRGNAVAKSEEELSSAITALGGF---------D----RGLYVEKWAP 64 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyP-vvvKP~~~-g--~gg~Gv~~v~~~~el~~~~~~~~~~---------~----~~~lvEe~I~ 64 (437)
.++|++|+.++++++||| +++|.... + .-+-||.+..|.+|+.++++.+.+. . ..++||+.++
T Consensus 24 ~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~ 103 (392)
T PRK14046 24 LAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTHQTGPEGKPVQRVYVETADP 103 (392)
T ss_pred EECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhhccCCCCCeeeeEEEEEecC
Confidence 367999999999999995 59997332 1 1234789999999999998876321 1 3699999999
Q ss_pred CCeEEEEEEEEcCC-CceEEe
Q 013729 65 FVKELAVIVVRGRD-KSILCY 84 (437)
Q Consensus 65 g~~E~sv~~~~d~~-G~~~~~ 84 (437)
+.+|+-+.+..|.. |.++.+
T Consensus 104 ~~~E~ylgi~~D~~~g~~v~~ 124 (392)
T PRK14046 104 IERELYLGFVLDRKSERVRVI 124 (392)
T ss_pred CCcEEEEEEEECCCCCcEEEE
Confidence 88999999998864 454444
No 112
>PLN02235 ATP citrate (pro-S)-lyase
Probab=97.04 E-value=0.031 Score=56.84 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=63.0
Q ss_pred cCCHHHHHHHHHh---hCCc-EEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcCCC----------CcEEEeeccC
Q 013729 3 VNDLESARRAGKQ---FGYP-LMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGFD----------RGLYVEKWAP 64 (437)
Q Consensus 3 v~s~~e~~~~a~~---~gyP-vvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~~~----------~~~lvEe~I~ 64 (437)
+++.+|+.+++++ ++.| +||||-... ||| ||.+++|++|+.++.+.+.+.. ..+|||++++
T Consensus 34 ~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~-GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~ 112 (423)
T PLN02235 34 VTESTDFNELANKEPWLSSTKLVVKPDMLF-GKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVP 112 (423)
T ss_pred cCCHHHHHHHHHhhhhhCCCcEEEEccccc-CCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCC
Confidence 4889999999998 7775 599997644 566 5899999999999988764322 3689999999
Q ss_pred CCeEEEEEEEEcCCCceE
Q 013729 65 FVKELAVIVVRGRDKSIL 82 (437)
Q Consensus 65 g~~E~sv~~~~d~~G~~~ 82 (437)
-.+|+-+.++.|.+...+
T Consensus 113 i~~E~Ylsi~~DR~~~~i 130 (423)
T PLN02235 113 HDQEFYLSIVSDRLGCSI 130 (423)
T ss_pred CcceEEEEEEEecCCCEE
Confidence 889998888887766543
No 113
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=97.01 E-value=0.016 Score=51.62 Aligned_cols=98 Identities=10% Similarity=0.078 Sum_probs=60.0
Q ss_pred CcEEEeeccCCCeEEEEEEEEcC-CCceEEeeeeeeEEec--Cc--------------eEE---EEeCCCCCHHHHHHHH
Q 013729 55 RGLYVEKWAPFVKELAVIVVRGR-DKSILCYPVVETIHKE--NI--------------CHI---VKAPAAVPWKISELAT 114 (437)
Q Consensus 55 ~~~lvEe~I~g~~E~sv~~~~d~-~G~~~~~~~~e~~~~~--g~--------------~~~---~~~P~~l~~~~~~~i~ 114 (437)
..+.||||+-| ..+.+..+.+. .+++=.+++...++.+ |. ... .-.|..+.+.+.+++-
T Consensus 21 ~~~~IeEyviG-~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~vlRESLL~~vf 99 (188)
T PF06973_consen 21 ENAIIEEYVIG-VPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPAVLRESLLPKVF 99 (188)
T ss_dssp CCEEEEE---S-EEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EEEEEEEEEEE-GGGHHHHH
T ss_pred cccEEEEEecC-ceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceEEECCcccchhHhhHHHHH
Confidence 45999999997 77777766543 3344344433333221 10 111 1245667777888888
Q ss_pred HHHHHHHHHc------CCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 115 DVAHKAVSSL------EGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 115 ~~a~~i~~al------g~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
+++.+++++. |..|+|.+|.++|+|.++++.|+.+|..+
T Consensus 100 e~ge~fV~a~k~l~~PG~iGPFcLq~ivt~dle~vvfevS~RI~g 144 (188)
T PF06973_consen 100 EMGERFVEASKELVPPGMIGPFCLQSIVTDDLEFVVFEVSARIVG 144 (188)
T ss_dssp HHHHHHHHHHHHHSTT---EEEEEEEEE-TTSSEEEEEEESSB-G
T ss_pred HHHHHHHHHHHHhcCCCccccceEEEEEcCCceEEEEEEeccccC
Confidence 8888877765 77899999999999999999999999985
No 114
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=96.95 E-value=0.0072 Score=55.76 Aligned_cols=78 Identities=32% Similarity=0.410 Sum_probs=57.6
Q ss_pred ccCCHHHHHHHHHhhCCc-EEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcCC-------------CCcEEEeecc
Q 013729 2 EVNDLESARRAGKQFGYP-LMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF-------------DRGLYVEKWA 63 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyP-vvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~~-------------~~~~lvEe~I 63 (437)
.++|++|+.++++.+|.| +||||-... ||| ||.+++|++|+.++...+.+. -..++||+++
T Consensus 23 ~a~s~eea~~~~~~l~~~~~VvKaQvl~-GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v 101 (202)
T PF08442_consen 23 VATSPEEAREAAKELGGKPLVVKAQVLA-GGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQTGPKGEKVNKVLVEEFV 101 (202)
T ss_dssp EESSHHHHHHHHHHHTTSSEEEEE-SSS-STTTTTTCEEEESSHHHHHHHHHTTTTSEEE-TTSTTTEEEE--EEEEE--
T ss_pred ecCCHHHHHHHHHHhCCCcEEEEEeEee-cCcccCCceeecCCHHHHHHHHHHHhCCceEeeecCCCCCEeeEEEEEecC
Confidence 468999999999999985 799996643 555 689999999999998876321 1578999999
Q ss_pred CCCeEEEEEEEEcCCCc
Q 013729 64 PFVKELAVIVVRGRDKS 80 (437)
Q Consensus 64 ~g~~E~sv~~~~d~~G~ 80 (437)
+-.+|+-+.+..|.+..
T Consensus 102 ~~~~E~Ylsi~~DR~~~ 118 (202)
T PF08442_consen 102 DIKREYYLSITLDRESR 118 (202)
T ss_dssp -CCEEEEEEEEEETTTT
T ss_pred ccCceEEEEEEeccCCC
Confidence 98899888887776543
No 115
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=96.93 E-value=0.014 Score=49.89 Aligned_cols=115 Identities=15% Similarity=0.108 Sum_probs=69.7
Q ss_pred CcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeeeEEecCceE
Q 013729 18 YPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICH 97 (437)
Q Consensus 18 yPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~~~~~g~~~ 97 (437)
-|+.|||.... -.--=.++.+.++|...-.. ..+..+++.+.++...|+.+.++ +|+++.... +....
T Consensus 2 ~~~FiKP~~~~-K~F~g~V~~~~~dl~~~~~~--~~~~~V~vSe~v~~~~E~R~fi~---~g~vv~~s~----Y~~~~-- 69 (130)
T PF14243_consen 2 RPVFIKPPDDD-KSFTGRVFRSGEDLIGFGSL--DPDTPVLVSEVVEIESEWRCFIV---DGEVVTGSP----YRGDW-- 69 (130)
T ss_pred CCeEeCCCCCC-CcceeEEEcchhhccccCCC--CCCceEEEeceEeeeeeEEEEEE---CCEEEEEee----cCCCc--
Confidence 48999997522 12222356666665422111 12245999999998899999888 677766533 22211
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHc-CCceEEEEEEEEeCCCcEEEEEEcCCCC
Q 013729 98 IVKAPAAVPWKISELATDVAHKAVSSL-EGAGIFAVELFWTNNGQILLNEVAPRPH 152 (437)
Q Consensus 98 ~~~~P~~l~~~~~~~i~~~a~~i~~al-g~~G~~~ve~~~~~dg~~~viEiNpR~~ 152 (437)
....+.+..+. +.+.+++. ..--.+.+|+-++++|..+|+|+|+--+
T Consensus 70 ----~~~~~~~~~~~----~~~~~~~~~~~p~~~vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 70 ----DLEPDPDVVAF----AIQALAAAWTLPPAYVLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred ----ccCCCHHHHHH----HHHHHHhcccCCCeEEEEEEEeCCCCEEEEEecCccc
Confidence 11123443333 33333322 2235788999999888999999999765
No 116
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=96.82 E-value=0.0087 Score=59.45 Aligned_cols=79 Identities=32% Similarity=0.352 Sum_probs=63.7
Q ss_pred ccCCHHHHHHHHHhhC-CcEEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcC----C------CCcEEEeeccC-C
Q 013729 2 EVNDLESARRAGKQFG-YPLMVKSKRLAYDGR----GNAVAKSEEELSSAITALGG----F------DRGLYVEKWAP-F 65 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~g-yPvvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~----~------~~~~lvEe~I~-g 65 (437)
.+.|++|+.++++++| .|+|||+-... ||| ||.+++|.+|..++.+.+.+ . ...+|||++++ -
T Consensus 24 v~~s~eea~~~a~~lg~~~~VvKaQV~a-GGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~~~~~ 102 (387)
T COG0045 24 VATSPEEAEEAAKELGGGPVVVKAQVHA-GGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEAVDII 102 (387)
T ss_pred eeeCHHHHHHHHHHhCCCcEEEEeeeee-cCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEecCCCc
Confidence 4679999999999998 89999996533 454 79999999999998887654 1 26799999999 4
Q ss_pred CeEEEEEEEEcCCCce
Q 013729 66 VKELAVIVVRGRDKSI 81 (437)
Q Consensus 66 ~~E~sv~~~~d~~G~~ 81 (437)
.+|+-+.++.|...+.
T Consensus 103 ~~E~Ylsiv~DR~~~~ 118 (387)
T COG0045 103 KKEYYLSIVLDRSSRR 118 (387)
T ss_pred cceEEEEEEEEcCCCc
Confidence 3499888888876554
No 117
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=96.75 E-value=0.058 Score=51.18 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=75.6
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCH---HHHHHHHHH-hc-------------CCCCcEEEeeccCC--C---eEEEEE
Q 013729 15 QFGYPLMVKSKRLAYDGRGNAVAKSE---EELSSAITA-LG-------------GFDRGLYVEKWAPF--V---KELAVI 72 (437)
Q Consensus 15 ~~gyPvvvKP~~~g~gg~Gv~~v~~~---~el~~~~~~-~~-------------~~~~~~lvEe~I~g--~---~E~sv~ 72 (437)
.+.-++||||+.++ |+..+..-.+. +++...+.. +. .-.++++||+++.. + .++-+.
T Consensus 54 ~Lp~~fViK~nhgs-g~~~i~~dk~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~ 132 (239)
T PF14305_consen 54 SLPDKFVIKPNHGS-GSNIIVRDKSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFF 132 (239)
T ss_pred cCCCCEEEEEecCC-CcEEEEeCCcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEE
Confidence 35568999996643 55444444333 222222221 10 11268999999983 2 467777
Q ss_pred EEEcCCCceEEeeeeeeEEec---------Cc---eEEEEeCC--CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC
Q 013729 73 VVRGRDKSILCYPVVETIHKE---------NI---CHIVKAPA--AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN 138 (437)
Q Consensus 73 ~~~d~~G~~~~~~~~e~~~~~---------g~---~~~~~~P~--~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~ 138 (437)
++ +|+...+-+....... .. ......+. .-.++..++|.++|+++.+.+. .+.|||..+
T Consensus 133 cF---~G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~~~~~~~~~~~kP~~l~emi~iA~~Ls~~f~---fvRVDlY~~- 205 (239)
T PF14305_consen 133 CF---NGKPKFIQVDSDRFGNHKRNFYDRDWNRLPFRSDYPPDEDIPKPKNLEEMIEIAEKLSKGFP---FVRVDLYNV- 205 (239)
T ss_pred EE---CCEEEEEEEEeCCCCCeEEEEECcccCCCccccCCCCCCCCCCChhHHHHHHHHHHHccCCC---EEEEEEEEe-
Confidence 66 4654333222110000 00 00011111 1345677889999999988754 579999887
Q ss_pred CCcEEEEEEcCCCCC
Q 013729 139 NGQILLNEVAPRPHN 153 (437)
Q Consensus 139 dg~~~viEiNpR~~~ 153 (437)
+|++||-|+-..|++
T Consensus 206 ~~~iyFGElTf~p~~ 220 (239)
T PF14305_consen 206 DGKIYFGELTFTPGA 220 (239)
T ss_pred CCcEEEEeeecCCCC
Confidence 677999999999985
No 118
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=96.64 E-value=0.0067 Score=50.05 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=56.0
Q ss_pred EeeccCccCCCccccccchhhhhccC---Cc--eEEEeccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccc
Q 013729 193 NLLGEAEGERGFYLAHQLIGKALSIP---GA--TVHWYDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQ 265 (437)
Q Consensus 193 ~~~~~~~~~~~~~p~~~~~~~~~~~p---g~--~~~~~~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~ 265 (437)
+++++ +|...|.|..+.+.. ...| ++ |..++.+..+.+ +..+++++++|+|+++|++++.++++++.
T Consensus 3 Ri~AE-dp~~~F~P~~G~i~~-~~~p~g~gvR~Dt~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~---- 76 (107)
T smart00878 3 RINAE-DPANGFLPSPGRITR-YRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFR---- 76 (107)
T ss_pred EEEee-CCCCCcccCCCEEeE-EEcCCCCCEEEEccCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCE----
Confidence 44554 344456654333332 2233 33 333444444543 56789999999999999999999998754
Q ss_pred cCCCCeEEEEEccCCCHHHHHHHHHHHHH
Q 013729 266 FKILPRIGIIMGSDSDLPVMKDAAKILTM 294 (437)
Q Consensus 266 ~~~~~~V~ii~gs~sD~~~~~~~~~~L~~ 294 (437)
|.|..++.+.+..+...-..
T Consensus 77 ---------i~Gv~TN~~~l~~ll~~~~f 96 (107)
T smart00878 77 ---------IEGVKTNIPFLRALLRHPDF 96 (107)
T ss_pred ---------EECccCCHHHHHHHhcCHhh
Confidence 46677889988887655333
No 119
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=96.63 E-value=0.0081 Score=49.54 Aligned_cols=88 Identities=19% Similarity=0.325 Sum_probs=60.0
Q ss_pred EEeeccCccCCCccccccchhhhhccC---Cc--eEEEeccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCccc
Q 013729 192 YNLLGEAEGERGFYLAHQLIGKALSIP---GA--TVHWYDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDC 264 (437)
Q Consensus 192 ~~~~~~~~~~~~~~p~~~~~~~~~~~p---g~--~~~~~~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~ 264 (437)
++++++ +|...|.|..+.+.. ...| ++ +..++.+.++.+ +..++.++++|.|+++|++++.++++++
T Consensus 2 ~Ri~AE-dP~~~F~Ps~G~i~~-~~~P~g~gvRvDt~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~---- 75 (107)
T PF02785_consen 2 ARIYAE-DPANGFLPSPGRITR-YSPPGGPGVRVDTGVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAET---- 75 (107)
T ss_dssp EEEESB-ETTTTTEBSSEEESE-EE-SSSTTEEEEESESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHH----
T ss_pred cEEeec-CCCCCCcCCcEEEeE-EECCCCCCeeEEecCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceE----
Confidence 466666 555567764444433 2334 44 334445555554 5678999999999999999999999875
Q ss_pred ccCCCCeEEEEEccCCCHHHHHHHHHHHHH
Q 013729 265 QFKILPRIGIIMGSDSDLPVMKDAAKILTM 294 (437)
Q Consensus 265 ~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~ 294 (437)
.|.|-.++.+.+..+...-+.
T Consensus 76 ---------~I~Gv~TNi~fl~~ll~~~~f 96 (107)
T PF02785_consen 76 ---------VIEGVKTNIPFLRALLAHPEF 96 (107)
T ss_dssp ---------EEESSSHSHHHHHHHHTSHHH
T ss_pred ---------EEECccCCHHHHHHHhCCccc
Confidence 357888899999888755443
No 120
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.0051 Score=59.82 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=74.7
Q ss_pred CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHh--cCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeeeEEecC
Q 013729 17 GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITAL--GGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKEN 94 (437)
Q Consensus 17 gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~--~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~~~~~g 94 (437)
.||+|||-- .+.+|.|=.+|+|.+||.+...-. .... .-+|.||+-..++.|+-+....-.++.-.+..++..
T Consensus 239 tyPvVVkvg-hahsGmGKiKV~Nh~dfqDi~svval~~Ty--at~epFiDaKYDiriQKIG~nYKaymRtsIsgnWKt-- 313 (488)
T KOG3895|consen 239 TYPVVVKVG-HAHSGMGKIKVENHEDFQDIASVVALTKTY--ATAEPFIDAKYDIRIQKIGHNYKAYMRTSISGNWKT-- 313 (488)
T ss_pred CCcEEEEec-ccccccceeeecchhhhHhHHHHHHHHhhh--hhccccccccceeehhhhhhhHHHHhhhhhccCccc--
Confidence 499999994 455789999999999988754432 2222 678999985455555544321101111111112211
Q ss_pred ceEEEEeCCCCCHHHH------HHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcC
Q 013729 95 ICHIVKAPAAVPWKIS------ELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAP 149 (437)
Q Consensus 95 ~~~~~~~P~~l~~~~~------~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNp 149 (437)
+....+. ++-+-+...+.+.+|.-.+|.|+.+..+||+=|++|||-
T Consensus 314 ---------NtGSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d 365 (488)
T KOG3895|consen 314 ---------NTGSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMD 365 (488)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecc
Confidence 1122222 233445666667777778999999999999999999997
No 121
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.94 E-value=0.051 Score=53.11 Aligned_cols=150 Identities=22% Similarity=0.243 Sum_probs=94.2
Q ss_pred CccCCHHHHHHHHHhh--CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC---CCcEEEeeccCCCeEEEEEEEE
Q 013729 1 MEVNDLESARRAGKQF--GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF---DRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 1 ~~v~s~~e~~~~a~~~--gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~---~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
+++-|.+|+..++..+ +-|+=+||.... ||+|..++.+.++|+.++..+... ...+++|+-++...-+||--++
T Consensus 118 ~tvFs~~DA~~A~~~LL~~G~VRlKp~~a~-gG~GQ~vv~~~~~Ld~~L~~~~~~~l~~~GlVLE~~L~~~~T~SVGqv~ 196 (355)
T PF11379_consen 118 YTVFSREDARRAARRLLRDGPVRLKPVHAT-GGRGQQVVADADELDAALAALDDAELARHGLVLEEDLEEVVTYSVGQVR 196 (355)
T ss_pred ccccCHHHHHHHHHHHhccCCeeeccCccc-CCCCceEecCHHHHHHHHHcCCHHHHHhCCEEEecccCCCceeeEEEEE
Confidence 4677899999999876 569999997754 999999999999999999865321 1238999999976778887665
Q ss_pred cCCCceEEeeeeeeEEecCc-------eEEEEe--------CCCCCHHHHHHHHHHH---HHHHHHcCCceE----EEEE
Q 013729 76 GRDKSILCYPVVETIHKENI-------CHIVKA--------PAAVPWKISELATDVA---HKAVSSLEGAGI----FAVE 133 (437)
Q Consensus 76 d~~G~~~~~~~~e~~~~~g~-------~~~~~~--------P~~l~~~~~~~i~~~a---~~i~~alg~~G~----~~ve 133 (437)
- .|....|-.+++...++. +...+. ...+++.....|++.. ..+..+ |-|+ -|-|
T Consensus 197 v-~g~~~SY~GtQ~lT~dn~G~~VYGGS~L~VvRGg~~aLl~l~l~~~~r~AV~qA~~Yd~Aa~~~--yPgf~ASRRNYD 273 (355)
T PF11379_consen 197 V-AGLVASYYGTQRLTRDNQGEEVYGGSDLVVVRGGFDALLALDLPDDVRLAVEQARAYDAAAQAC--YPGFFASRRNYD 273 (355)
T ss_pred E-CCEEEEEeeEeecccCCCCCEeecCceEEEEeCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh--Cchhheeeccce
Confidence 3 445555555555544321 122221 2246665555444322 122222 2232 2334
Q ss_pred EEE--eCCCcEE--EEEEcCCCCCC
Q 013729 134 LFW--TNNGQIL--LNEVAPRPHNS 154 (437)
Q Consensus 134 ~~~--~~dg~~~--viEiNpR~~~s 154 (437)
+.. +.+|... |+|=.=|.|+.
T Consensus 274 Va~G~da~G~~r~GVLEQSWRvGGA 298 (355)
T PF11379_consen 274 VAQGLDAQGRWRSGVLEQSWRVGGA 298 (355)
T ss_pred eeeccCCCCCeeeceeeeeeccCCC
Confidence 443 3345333 78988898853
No 122
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=94.57 E-value=0.071 Score=53.53 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=65.9
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCCCC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPLP 349 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~p 349 (437)
++.||++..+-+....++.+.|++.|+.++..+.+.+-+.+.+.+..+.+++.+++++|++.||+ -+...+++.....|
T Consensus 24 ~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~~~~p 103 (349)
T cd08550 24 KVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRLDKP 103 (349)
T ss_pred eEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCC
Confidence 45577765554566778888899889876665555566777788888888888999999988776 47777777777889
Q ss_pred EEeccCC
Q 013729 350 VIGVPVR 356 (437)
Q Consensus 350 Vi~~p~~ 356 (437)
+|.+|+.
T Consensus 104 ~i~VPTt 110 (349)
T cd08550 104 IVIVPTI 110 (349)
T ss_pred EEEeCCc
Confidence 9999984
No 123
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=94.12 E-value=0.12 Score=51.93 Aligned_cols=87 Identities=21% Similarity=0.170 Sum_probs=66.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccCCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPL 348 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~ 348 (437)
.++.|+++....+....++.+.|++.|+.+.......+-+.+.+.+..+.+++.+++++|++.||+. ....+++.....
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~ 102 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADYLGA 102 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHHcCC
Confidence 3566777655555777788889999999875444555666677778888888889999999988764 666677666779
Q ss_pred CEEeccCC
Q 013729 349 PVIGVPVR 356 (437)
Q Consensus 349 pVi~~p~~ 356 (437)
|+|.+|+.
T Consensus 103 P~iaIPTT 110 (351)
T cd08170 103 PVVIVPTI 110 (351)
T ss_pred CEEEeCCc
Confidence 99999984
No 124
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=93.59 E-value=0.73 Score=46.19 Aligned_cols=142 Identities=19% Similarity=0.220 Sum_probs=87.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC---CCChhHHHHhHhhhhhcCC---eEEEEecccc-ccccCcc
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA---HRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 342 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~---hr~p~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 342 (437)
.++.++++.........++.+.|+..|+++..-+... +.+.+.+.+..+.+++.++ +++|++.||+ -.+.+++
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~v 104 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFV 104 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHH
Confidence 4566777655555677788888999998876544432 5666777777777888888 7888888765 5888888
Q ss_pred cC--CCCCCEEeccCCC-----CCCCChhhHHHh--hh--CCCCCceEEEEeCC----------cchHHHHHHHHHccCC
Q 013729 343 AA--RTPLPVIGVPVRA-----SALDGLDSLLSI--VQ--MPRGVPVATVAINN----------ATNAGLLAVRMLGFGD 401 (437)
Q Consensus 343 ~~--~~~~pVi~~p~~~-----~~~~g~~~l~~~--~~--~~~gvp~~tv~~~~----------~~~aa~~a~~~l~~~~ 401 (437)
++ ..-.|+|.+|+.. +..+|..++-.. -+ -+.-.|.+++ +|- ..+...-++...-+.|
T Consensus 105 A~~~~rgip~i~VPTT~~a~vds~~~~k~~i~~~~~kn~~g~~~~P~~vi-iD~~~l~tlP~~~~~~G~~d~ik~~~i~d 183 (345)
T cd08195 105 AATYMRGIDFIQIPTTLLAQVDSSVGGKTGVNHPLGKNLIGAFYQPKLVL-IDTDFLKTLPEREFRSGLAEVIKYGLIAD 183 (345)
T ss_pred HHHHhcCCCeEEcchhHHHHhhccCCCcceecCCCCCceecccCCCCEEE-EehHHhhhCCHHHHHhHHHHHHHHHhhCC
Confidence 73 5578999999851 222222211000 00 0122333332 231 1223334566667789
Q ss_pred hHHHHHHHHHH
Q 013729 402 ADLRARMQQYM 412 (437)
Q Consensus 402 ~~~~~~~~~~~ 412 (437)
+.++.++....
T Consensus 184 ~~~~~~l~~~~ 194 (345)
T cd08195 184 AELFEWLEENK 194 (345)
T ss_pred HHHHHHHHhhH
Confidence 99999987643
No 125
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=93.52 E-value=0.03 Score=53.38 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=83.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE-ecCCCChhHHHHhHhhhhhcCCeEEEEecc-ccccccCcccCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGAG-GAAHLPGMVAARTP 347 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v-~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag-~~~~l~~~i~~~~~ 347 (437)
.++.+|++........+++.+.|+..|+++..-. ...+-+-+...+..+.++..++++++++.| ....+.-+++.+..
T Consensus 20 ~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~ 99 (250)
T PF13685_consen 20 KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFELG 99 (250)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcC
Confidence 4666777666555566777888999999976321 112234444556666766678888888665 46899999999999
Q ss_pred CCEEeccCCCCCCCChhhHHHhh--------hC-CCCCceEEEE-eC---------CcchHHHHHHHHHccCChHHHHHH
Q 013729 348 LPVIGVPVRASALDGLDSLLSIV--------QM-PRGVPVATVA-IN---------NATNAGLLAVRMLGFGDADLRARM 408 (437)
Q Consensus 348 ~pVi~~p~~~~~~~g~~~l~~~~--------~~-~~gvp~~tv~-~~---------~~~~aa~~a~~~l~~~~~~~~~~~ 408 (437)
+|.|.+|+. .+.||+.+-.+.+ .+ |...|.+.+. +| ...+.+-+..++-++.|+.|..++
T Consensus 100 ~p~isVPTa-~S~DG~aS~~Asl~~~~g~k~s~~~a~~P~aIiaD~dIi~~AP~~l~~aG~GDli~k~tA~~DW~La~~~ 178 (250)
T PF13685_consen 100 IPFISVPTA-ASHDGFASPVASLTVDDGFKVSYGPAKAPIAIIADTDIIANAPRRLIAAGFGDLISKYTALADWKLAHEY 178 (250)
T ss_dssp --EEEEES---SSGGGTSSEEEEEET-TEEEEE-E----SEEEEEHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEeccc-cccccccCCCeeEEecCCCceeecCCCCCeEEEEeHHHHHhCCHHHHHhhHHHHHHhhhhHHHHHHHHHh
Confidence 999999995 2345553211111 22 3444555332 22 144556677788888899998877
Q ss_pred HHHHHHhHHH
Q 013729 409 QQYMEDMRDD 418 (437)
Q Consensus 409 ~~~~~~~~~~ 418 (437)
.++..+...+
T Consensus 179 ~e~~~~~~~~ 188 (250)
T PF13685_consen 179 GEPYCEYAAD 188 (250)
T ss_dssp TS---HHHHH
T ss_pred hhhHHHHHHH
Confidence 5554444333
No 126
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.87 Score=47.05 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC
Q 013729 4 NDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP 64 (437)
Q Consensus 4 ~s~~e~~~~a~~~-gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~ 64 (437)
.+.+++++.+++- .-=+||||.... .|.|+++++...++.. + ..++||+||+
T Consensus 291 ~d~e~lrk~w~~nasr~wIVkppasa-Rg~gIrv~~kw~q~pk------~--rpLvvQ~yie 343 (662)
T KOG2156|consen 291 ADREELRKYWEKNASRLWIVKPPASA-RGIGIRVINKWSQFPK------D--RPLVVQKYIE 343 (662)
T ss_pred ccHHHHHHHHhhCccccEEecCcccc-cCcceEeccchhhCCC------c--ccHHHHHHhh
Confidence 4667777777652 222889998765 7899999998776532 2 3378888887
No 127
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=93.11 E-value=0.39 Score=48.26 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=64.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 348 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 348 (437)
.++.+|++..........+.+.|+..| .+... ...+.+.+.+.+..+.+++.+.+++|++.||+ .++.++++-....
T Consensus 35 ~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~~rgi 112 (350)
T PRK00843 35 GRALIVTGPTTKKIAGDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAYRLGI 112 (350)
T ss_pred CeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence 356677766554445566777888888 76544 45688888888888888888899999988765 5788888777788
Q ss_pred CEEeccCC
Q 013729 349 PVIGVPVR 356 (437)
Q Consensus 349 pVi~~p~~ 356 (437)
|+|.+|+.
T Consensus 113 p~I~IPTT 120 (350)
T PRK00843 113 PFISVPTA 120 (350)
T ss_pred CEEEeCCC
Confidence 99999985
No 128
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=92.72 E-value=0.47 Score=47.33 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=59.4
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCC--ChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR--TPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTP 347 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr--~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~ 347 (437)
++.+|++...-....+++.+.|++.|+.+......... +-+.+.+..+.+++ +.+++|+..||+ -++.++++-...
T Consensus 26 kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA~~~g 104 (332)
T cd08549 26 KIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVSFKVG 104 (332)
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHHHHcC
Confidence 56677765544444577788899989876543212233 44556666666666 788999988775 588888887778
Q ss_pred CCEEeccCC
Q 013729 348 LPVIGVPVR 356 (437)
Q Consensus 348 ~pVi~~p~~ 356 (437)
.|+|.+|+.
T Consensus 105 ip~I~VPTT 113 (332)
T cd08549 105 KPFISVPTA 113 (332)
T ss_pred CCEEEeCCC
Confidence 899999985
No 129
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=92.55 E-value=0.29 Score=49.46 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=63.4
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 348 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 348 (437)
.++.+|++..........+.+.|+..|+.+....+..+-+-+.+.+..+.+++.+++++|++.||+ -.+..+++.....
T Consensus 30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~ 109 (366)
T PRK09423 30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGV 109 (366)
T ss_pred CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCC
Confidence 356567654443446667777888888876433445566666677777788888999999988876 4777777777778
Q ss_pred CEEeccCC
Q 013729 349 PVIGVPVR 356 (437)
Q Consensus 349 pVi~~p~~ 356 (437)
|+|.+|+.
T Consensus 110 p~i~IPTt 117 (366)
T PRK09423 110 PVVIVPTI 117 (366)
T ss_pred CEEEeCCc
Confidence 99999984
No 130
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=92.41 E-value=0.58 Score=46.76 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=64.4
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 348 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 348 (437)
.++.++++.........++...|++.| .+..-+ ..+-+.+.+.+..+.+++.+++++|++.||+ -++..+++-....
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~~~~ 103 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVI-VEDATYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYKLGI 103 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcC-CeEEEE-eCCCCHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence 356577765555556677788888888 765543 4577788888888888888999999988765 5777787777778
Q ss_pred CEEeccCC
Q 013729 349 PVIGVPVR 356 (437)
Q Consensus 349 pVi~~p~~ 356 (437)
|+|.+|+.
T Consensus 104 p~i~iPTT 111 (339)
T cd08173 104 PFISVPTA 111 (339)
T ss_pred CEEEecCc
Confidence 99999985
No 131
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=92.33 E-value=0.2 Score=50.75 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=62.9
Q ss_pred CeEEEEEccCCCH-HHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccCCC
Q 013729 270 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAART 346 (437)
Q Consensus 270 ~~V~ii~gs~sD~-~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~ 346 (437)
.++.++++..+.. .....+.+.|+..|+.+..- -+..|-+.+.+.+.++.+++.+++++|++.||+. +++.+++...
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~ 103 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLA 103 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 3666777765544 56678888999888876422 2445778888888888888889999999887753 5555554332
Q ss_pred ------------------CCCEEeccCC
Q 013729 347 ------------------PLPVIGVPVR 356 (437)
Q Consensus 347 ------------------~~pVi~~p~~ 356 (437)
..|+|.+|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p~i~VPTt 131 (370)
T cd08551 104 TNPGDIWDYEGGKPVIKPALPLIAIPTT 131 (370)
T ss_pred hCCCcHHHHhCcccccCCCCCEEEecCC
Confidence 6899999985
No 132
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=1.6 Score=45.67 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=35.6
Q ss_pred CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc-----CCCCcEEEeeccCC
Q 013729 17 GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG-----GFDRGLYVEKWAPF 65 (437)
Q Consensus 17 gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~-----~~~~~~lvEe~I~g 65 (437)
....++||.... -|+|++++++.+++........ .....++++.||+.
T Consensus 199 ~~~wIvKP~~~s-rg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~ 251 (497)
T KOG2157|consen 199 RSWWIVKPASKS-RGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDR 251 (497)
T ss_pred cceEEecccccc-ccceeEEecchhhhhhhhhcccccccccccccceeeeeccC
Confidence 457999997654 7999999999999888764321 11245888999884
No 133
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=91.79 E-value=0.31 Score=48.83 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=62.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEE-EEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTP 347 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~-~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~ 347 (437)
.++.+|++..+.......+.+.|++.|+.+.. .....+-+-+.+.+..+.+++.+++++|++.||+ -++..+++....
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~ 102 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLG 102 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence 35667776544455566777888888887642 2234455556666777777888999999988776 477777766667
Q ss_pred CCEEeccCC
Q 013729 348 LPVIGVPVR 356 (437)
Q Consensus 348 ~pVi~~p~~ 356 (437)
.|+|.+|+.
T Consensus 103 ~p~i~VPTt 111 (345)
T cd08171 103 KPVFTFPTI 111 (345)
T ss_pred CCEEEecCc
Confidence 899999984
No 134
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=91.45 E-value=0.78 Score=47.32 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=44.0
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCcCeEEe--CCHHHHHHHHHHhcCCCCcEEEeeccCC
Q 013729 7 ESARRAGKQFGYPLMVKSKRLAYDGRGNAVA--KSEEELSSAITALGGFDRGLYVEKWAPF 65 (437)
Q Consensus 7 ~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v--~~~~el~~~~~~~~~~~~~~lvEe~I~g 65 (437)
.|+.+++....--+|+||. ++|||+||.+= .++++.+++++++.+.+ +++|||+.-
T Consensus 328 ~dL~~~~~a~r~~lVLKP~-D~Ygg~GV~~G~e~~~eeW~~~l~~a~~~~--yilQe~v~~ 385 (445)
T PF14403_consen 328 VDLVEFAIANRDRLVLKPN-DEYGGKGVYIGWETSPEEWEAALEEAAREP--YILQEYVRP 385 (445)
T ss_pred hhHHHHHHhchhcEEeccc-cccCCCCeEECCcCCHHHHHHHHHHHhcCC--cEEEEEecC
Confidence 3566665555567999995 46799999875 46789999999887767 999999984
No 135
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=91.19 E-value=0.48 Score=47.51 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=59.4
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE-ecCC--CChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI-VSAH--RTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAART 346 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v-~s~h--r~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~ 346 (437)
++.||++.........++.+.|++.|+++.... .... .+.+.+.+..+.+++ +++++|++.||+ -+...+++...
T Consensus 25 ~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~~ 103 (348)
T cd08175 25 KALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYKT 103 (348)
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHhc
Confidence 455676543333335677888999998764432 2222 666667777776666 789999988876 47777887777
Q ss_pred CCCEEeccCC
Q 013729 347 PLPVIGVPVR 356 (437)
Q Consensus 347 ~~pVi~~p~~ 356 (437)
..|+|.+|+.
T Consensus 104 ~~p~i~IPTT 113 (348)
T cd08175 104 GIPYISVPTA 113 (348)
T ss_pred CCCEEEecCc
Confidence 8899999985
No 136
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=90.82 E-value=0.79 Score=45.90 Aligned_cols=137 Identities=20% Similarity=0.219 Sum_probs=82.7
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec-C--CCChhHHHHhHhhhhhcCC---eEEEEecccc-ccccCcc
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS-A--HRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 342 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s-~--hr~p~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 342 (437)
.++.++++..........+.+.|+..|+++...+.+ . +.+.+.+.+..+.+++.++ +++|++.||+ -.+++++
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i 100 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFV 100 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHH
Confidence 356677765544456677778889999887543332 2 3344667777777777776 7888888765 4777777
Q ss_pred c--CCCCCCEEeccCCC-----CCCCChhhHHHhhhCC--------CCCceEEEEeCC----------cchHHHHHHHHH
Q 013729 343 A--ARTPLPVIGVPVRA-----SALDGLDSLLSIVQMP--------RGVPVATVAINN----------ATNAGLLAVRML 397 (437)
Q Consensus 343 ~--~~~~~pVi~~p~~~-----~~~~g~~~l~~~~~~~--------~gvp~~tv~~~~----------~~~aa~~a~~~l 397 (437)
+ -....|+|.+|+.. +..+|..+ +..+ .-.|-.++ +|- ..+...-++...
T Consensus 101 A~~~~~~~p~i~VPTT~~a~~ds~~~~k~~----i~~~~~kn~~~~~~~P~~vi-iDp~l~~tlP~~~~~~G~~d~ik~~ 175 (344)
T TIGR01357 101 AATYMRGIRFIQVPTTLLAMVDSSVGGKTG----INFPGGKNLIGTFYQPKAVL-IDPDFLKTLPDRELRSGMAEVIKHG 175 (344)
T ss_pred HHHHccCCCEEEecCchhheeccccCccee----EeCCCCceEEeeccCCceEE-EcHHHHhhCCHHHHHhHHHHHHHHH
Confidence 6 34568999999842 11222221 1111 11233322 231 122233466777
Q ss_pred ccCChHHHHHHHHH
Q 013729 398 GFGDADLRARMQQY 411 (437)
Q Consensus 398 ~~~~~~~~~~~~~~ 411 (437)
.+.|+.+++++...
T Consensus 176 ~i~d~~~~~~l~~~ 189 (344)
T TIGR01357 176 LIADAELFDELESN 189 (344)
T ss_pred hhCCHHHHHHHHhh
Confidence 77899999988774
No 137
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=90.62 E-value=0.46 Score=48.17 Aligned_cols=85 Identities=22% Similarity=0.341 Sum_probs=56.9
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccC----
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA---- 344 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~---- 344 (437)
.++.|+++..+ ....++.+.|++.|+.+..-....+=+.+.+.+.++.+++.+++++|++.||+. ....+++.
T Consensus 23 ~r~livtd~~~--~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~ 100 (374)
T cd08183 23 RRVLLVTGASS--LRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPN 100 (374)
T ss_pred CcEEEEECCch--HHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcC
Confidence 35656765433 277788888999998865432333444456677777788889999999988764 33333321
Q ss_pred ------------------CCCCCEEeccCC
Q 013729 345 ------------------RTPLPVIGVPVR 356 (437)
Q Consensus 345 ------------------~~~~pVi~~p~~ 356 (437)
....|+|.+|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 130 (374)
T cd08183 101 PGSVLDYLEGVGRGLPLDGPPLPFIAIPTT 130 (374)
T ss_pred CCCHHHHHhccCccccCCCCCCCEEEecCC
Confidence 235899999985
No 138
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=90.44 E-value=0.42 Score=43.28 Aligned_cols=46 Identities=22% Similarity=0.151 Sum_probs=39.2
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 274 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 274 ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
++|.++ ++.+.++++.|.++||++.+| .+ |++|+ ++.|++|..+..
T Consensus 4 LISVsD--K~~l~~lAk~L~~lGf~I~AT----~G----TAk~L---~e~GI~v~~V~k 49 (187)
T cd01421 4 LISVSD--KTGLVEFAKELVELGVEILST----GG----TAKFL---KEAGIPVTDVSD 49 (187)
T ss_pred EEEEeC--cccHHHHHHHHHHCCCEEEEc----cH----HHHHH---HHcCCeEEEhhh
Confidence 777665 899999999999999999888 66 89999 677999887744
No 139
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=90.40 E-value=2.2 Score=42.15 Aligned_cols=132 Identities=20% Similarity=0.309 Sum_probs=80.0
Q ss_pred EEEEEEcCC--HHHHHHH----HHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE-ecCC--
Q 013729 237 GHITIVGSS--MGLVESR----LNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI-VSAH-- 307 (437)
Q Consensus 237 G~Vi~~G~s--~~eA~~k----~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v-~s~h-- 307 (437)
|.+..-|.| ..|+.+| ..+.++.+. -...+-+++.++ . +.+ ..+..+++++++.. --..
T Consensus 16 ~r~~lkGaDg~~~e~~~ra~~~v~rfL~~l~------~~~~~~flt~p~---~-mG~--~~~~~~~~~~~v~~~~~~~~~ 83 (355)
T COG3199 16 GRVLLKGADGLVAEAPKRAIVRVKRFLKKLD------ANGDVEFLTPPG---P-MGE--SLAEASGFKYRVIRFQESTPR 83 (355)
T ss_pred ceeeccccCcchhhhhHHHHHHHHHHHHhcc------ccCceEEEeCCc---c-cch--hHHHhhcCcceEEeecccCCC
Confidence 444455555 6666666 445555554 122333555443 1 222 13466778877662 1111
Q ss_pred CChhHHHHhHhhhhhcCCeEEEEeccccccccCcccC-CCCCCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCc
Q 013729 308 RTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA-RTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNA 386 (437)
Q Consensus 308 r~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~-~~~~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~ 386 (437)
-|-+.|..+.+++.++|+++++ .+|+..-..++..+ ....||+++|.......| |..+ ++
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIv-faGGDGTarDVa~av~~~vPvLGipaGvk~~Sg---------------vfA~---~P 144 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIV-FAGGDGTARDVAEAVGADVPVLGIPAGVKNYSG---------------VFAL---SP 144 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEE-EeCCCccHHHHHhhccCCCceEeeccccceecc---------------cccc---Ch
Confidence 3456788888999999998665 44666666666655 889999999997554333 2222 37
Q ss_pred chHHHHHHHHHcc
Q 013729 387 TNAGLLAVRMLGF 399 (437)
Q Consensus 387 ~~aa~~a~~~l~~ 399 (437)
..||.++.+.+.-
T Consensus 145 ~~aa~l~~~~lkg 157 (355)
T COG3199 145 EDAARLLGAFLKG 157 (355)
T ss_pred HHHHHHHHHHhcc
Confidence 7788888887765
No 140
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=90.30 E-value=1 Score=45.41 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=61.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChhHHHHhHhhhhhcCCe---EEEEecccc-ccccCcc
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGIE---IIIAGAGGA-AHLPGMV 342 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~hr~p~~~~~~~~~~~~~g~~---v~i~~ag~~-~~l~~~i 342 (437)
.++.++++..........+.+.|+..|+++...+.+ .+.+.+.+.+..+.+.+.|++ ++|++.||+ ..+.+++
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~ 103 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLL 103 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHH
Confidence 356567654433345567788999999987655432 245556677777778888998 888888765 6888887
Q ss_pred cC--CCCCCEEeccCC
Q 013729 343 AA--RTPLPVIGVPVR 356 (437)
Q Consensus 343 ~~--~~~~pVi~~p~~ 356 (437)
+. ....|+|.+|+.
T Consensus 104 A~~~~rgip~I~IPTT 119 (355)
T cd08197 104 AALLFRGIRLVHIPTT 119 (355)
T ss_pred HHHhccCCCEEEecCc
Confidence 64 246899999985
No 141
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=90.00 E-value=1.1 Score=45.26 Aligned_cols=87 Identities=17% Similarity=0.266 Sum_probs=61.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChhHHHHhHhhhhhcCC---eEEEEecccc-ccccCcc
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 342 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~hr~p~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 342 (437)
.++.++++.........++.+.|+..|+.+..-+.+ .+.+-+.+.+..+.+++.|+ +++|++.||+ -.+++++
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i 111 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFA 111 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHH
Confidence 356677765554556777788899999987643322 24455667777777777777 7888888765 5777777
Q ss_pred c--CCCCCCEEeccCC
Q 013729 343 A--ARTPLPVIGVPVR 356 (437)
Q Consensus 343 ~--~~~~~pVi~~p~~ 356 (437)
+ -....|+|.+|+.
T Consensus 112 A~~~~~gip~i~IPTT 127 (358)
T PRK00002 112 AATYMRGIRFIQVPTT 127 (358)
T ss_pred HHHhcCCCCEEEcCch
Confidence 6 3556899999985
No 142
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=89.39 E-value=0.58 Score=47.49 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=59.4
Q ss_pred CeEEEEEccCC-CHHHHHHHHHHHHHcCCcEEE-EEecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccC--
Q 013729 270 PRIGIIMGSDS-DLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA-- 344 (437)
Q Consensus 270 ~~V~ii~gs~s-D~~~~~~~~~~L~~~G~~~~~-~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~-- 344 (437)
.++.|+++..- .....+++...|++.|+.+.. .-+..+-+.+.+.+..+.+++.+++++|++.||+. +...+++.
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~ 106 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLA 106 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 35656665432 234577888889998987642 12335667777788888888889999999988764 44444433
Q ss_pred ----------------CCCCCEEeccCC
Q 013729 345 ----------------RTPLPVIGVPVR 356 (437)
Q Consensus 345 ----------------~~~~pVi~~p~~ 356 (437)
....|+|.+|+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 107 GSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred HCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 236799999985
No 143
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=89.23 E-value=1.3 Score=44.62 Aligned_cols=86 Identities=21% Similarity=0.358 Sum_probs=61.3
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChhHHHHhHhhhhhcCC----eEEEEecccc-ccccCcc
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI----EIIIAGAGGA-AHLPGMV 342 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~hr~p~~~~~~~~~~~~~g~----~v~i~~ag~~-~~l~~~i 342 (437)
++.+|+...........+.+.|+..|+++..-+.. .+.+.+.+.+..+.+.+.++ +++|++.||. -++++++
T Consensus 28 ~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~ 107 (354)
T cd08199 28 RRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLA 107 (354)
T ss_pred eEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHH
Confidence 55566644333334566778888889887643333 35677777887777778788 8999888764 6888888
Q ss_pred c--CCCCCCEEeccCC
Q 013729 343 A--ARTPLPVIGVPVR 356 (437)
Q Consensus 343 ~--~~~~~pVi~~p~~ 356 (437)
| -..-.|.|.+|+.
T Consensus 108 A~~~~rg~p~i~VPTT 123 (354)
T cd08199 108 ASLYRRGTPYVRIPTT 123 (354)
T ss_pred HHHhcCCCCEEEEcCc
Confidence 7 4667899999994
No 144
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=89.18 E-value=0.83 Score=46.34 Aligned_cols=86 Identities=22% Similarity=0.264 Sum_probs=59.5
Q ss_pred eEEEEEccCCC-HHHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCccc----
Q 013729 271 RIGIIMGSDSD-LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA---- 343 (437)
Q Consensus 271 ~V~ii~gs~sD-~~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~---- 343 (437)
++.||++.... ......+.+.|++.|+.+..- -+..+-+.+.+.+..+.+++.+++++|++.||+. ....+++
T Consensus 25 r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~ 104 (375)
T cd08194 25 RPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLAT 104 (375)
T ss_pred eEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHh
Confidence 56677754433 236778889999999876432 2345666666777888888889999999888753 4444443
Q ss_pred --------------CCCCCCEEeccCC
Q 013729 344 --------------ARTPLPVIGVPVR 356 (437)
Q Consensus 344 --------------~~~~~pVi~~p~~ 356 (437)
.....|+|.+|+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 105 NGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred CCCCHHHHhCcccccCCCCCEEEECCC
Confidence 2346799999984
No 145
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=88.01 E-value=0.46 Score=47.46 Aligned_cols=85 Identities=22% Similarity=0.264 Sum_probs=57.8
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccCCCCCC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPLP 349 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~p 349 (437)
++.|+++..........+.+.|++.++.+.-. +..|-+.+.+.+..+.+++.+++++|++.||+. ++..+++.....|
T Consensus 25 ~~livt~~~~~~~~~~~v~~~l~~~~~~~~~~-~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~~~p 103 (337)
T cd08177 25 RALVLTTPSLATKLAERVASALGDRVAGTFDG-AVMHTPVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRTGLP 103 (337)
T ss_pred eEEEEcChHHHHHHHHHHHHHhccCCcEEeCC-CCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhcCC
Confidence 56567654433335556677777665433222 234666666777777778889999999888764 7777776666889
Q ss_pred EEeccCC
Q 013729 350 VIGVPVR 356 (437)
Q Consensus 350 Vi~~p~~ 356 (437)
+|.+|+.
T Consensus 104 ~i~IPTt 110 (337)
T cd08177 104 IIAIPTT 110 (337)
T ss_pred EEEEcCC
Confidence 9999985
No 146
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=87.86 E-value=1.2 Score=44.25 Aligned_cols=85 Identities=22% Similarity=0.211 Sum_probs=60.0
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCC--
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAART-- 346 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~-- 346 (437)
++.+|++..........+...|++. +.+..- ....+-+-+.+.+..+.+++.+.+++|++.||+ -++..+++...
T Consensus 25 ~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~~ 103 (332)
T cd07766 25 RALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLNR 103 (332)
T ss_pred eEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhcC
Confidence 5657776544446667778888876 654332 233456667777777788888899999988775 47777776655
Q ss_pred CCCEEeccCC
Q 013729 347 PLPVIGVPVR 356 (437)
Q Consensus 347 ~~pVi~~p~~ 356 (437)
..|+|.+|+.
T Consensus 104 ~~p~i~iPTt 113 (332)
T cd07766 104 GLPIIIVPTT 113 (332)
T ss_pred CCCEEEEeCC
Confidence 7899999985
No 147
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=87.02 E-value=9 Score=34.88 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccC--CCHHHHHHHHHHHHHcCCcEEE-EEecCCCChhHHHHhHhh
Q 013729 243 GSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSD--SDLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASS 319 (437)
Q Consensus 243 G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~--sD~~~~~~~~~~L~~~G~~~~~-~v~s~hr~p~~~~~~~~~ 319 (437)
+.++..|+..+..+++..+. ..+..++.++.+|+ .|...+.++++.|++.|+.+++ .+-..+-+++++..|.+.
T Consensus 84 ~~~l~~AL~~A~~~L~~~~~---~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~ 160 (187)
T cd01452 84 KANFITGIQIAQLALKHRQN---KNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDA 160 (187)
T ss_pred cchHHHHHHHHHHHHhcCCC---cCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHH
Confidence 34588899988888875432 11224655666665 4566787899999999999764 443466777888888865
Q ss_pred h
Q 013729 320 A 320 (437)
Q Consensus 320 ~ 320 (437)
.
T Consensus 161 ~ 161 (187)
T cd01452 161 V 161 (187)
T ss_pred h
Confidence 4
No 148
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=86.76 E-value=0.66 Score=46.83 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=47.8
Q ss_pred CeEEEEEccCCCH-HHHHHHHHHHHHcCCcEEEEE-ecCCCChhHHHHhHhhhhhcCCeEEEEecccc
Q 013729 270 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 335 (437)
Q Consensus 270 ~~V~ii~gs~sD~-~~~~~~~~~L~~~G~~~~~~v-~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~ 335 (437)
+++.||++..... .....+.+.|++.|+.+..-. +..|=+.+.+.+..+.+++.+++++|++.|++
T Consensus 22 gr~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 89 (366)
T PF00465_consen 22 GRVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGS 89 (366)
T ss_dssp TEEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHH
T ss_pred CCEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 3777887652222 256788888889999874333 46677778888888888999999999988765
No 149
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=86.15 E-value=1.4 Score=44.46 Aligned_cols=84 Identities=21% Similarity=0.289 Sum_probs=55.9
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccC----
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA---- 344 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~---- 344 (437)
++.||++..+ .....+.+.|++.|+.+..- -+..+-+-+.+.+..+.+++.+++++|++.||+. +.+.+++.
T Consensus 25 ~~livtd~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~ 102 (367)
T cd08182 25 RVLLVTGPRS--AIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGA 102 (367)
T ss_pred eEEEEeCchH--HHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhC
Confidence 5656765433 25566778888888765321 2334555667777888888889999999887753 44444432
Q ss_pred ------------------CCCCCEEeccCC
Q 013729 345 ------------------RTPLPVIGVPVR 356 (437)
Q Consensus 345 ------------------~~~~pVi~~p~~ 356 (437)
....|+|.+|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 132 (367)
T cd08182 103 PREALEDLRIRNKERENRERALPLIAIPTT 132 (367)
T ss_pred CCcHHHHHHHhccCCCCCCCCCCEEEeCCC
Confidence 245799999985
No 150
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=85.52 E-value=2 Score=43.23 Aligned_cols=87 Identities=21% Similarity=0.316 Sum_probs=57.1
Q ss_pred CeEEEEEccCC-C-HHHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCccc--
Q 013729 270 PRIGIIMGSDS-D-LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA-- 343 (437)
Q Consensus 270 ~~V~ii~gs~s-D-~~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~-- 343 (437)
.++.|+++..+ . .....++.+.|+..|+.+..- -+..+-+-+.+.+..+.+++.+++++|++.||+. .....++
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~ 105 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVL 105 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence 35656765443 2 224567788889988876432 1334566666777778888899999999988764 3333322
Q ss_pred ---------------CCCCCCEEeccCC
Q 013729 344 ---------------ARTPLPVIGVPVR 356 (437)
Q Consensus 344 ---------------~~~~~pVi~~p~~ 356 (437)
.....|+|.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 106 IKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred HhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 1235799999985
No 151
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=85.46 E-value=4.2 Score=41.24 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=56.2
Q ss_pred eEEEEEccCCCH-HHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCccc----
Q 013729 271 RIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA---- 343 (437)
Q Consensus 271 ~V~ii~gs~sD~-~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~---- 343 (437)
++.|+++..... ....++.+.|+..|+.+..- -+..|-+-+.+.+..+.+++.+++++|++.||+. ...-+++
T Consensus 30 ~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~ 109 (377)
T cd08176 30 KALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVAT 109 (377)
T ss_pred eEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHh
Confidence 555665543333 45778888999888876432 1233666666777777788889999999888764 2222221
Q ss_pred --------------CCCCCCEEeccCC
Q 013729 344 --------------ARTPLPVIGVPVR 356 (437)
Q Consensus 344 --------------~~~~~pVi~~p~~ 356 (437)
-+...|+|.+|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 110 NGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred CCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 1356899999984
No 152
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=85.22 E-value=1.5 Score=44.66 Aligned_cols=85 Identities=26% Similarity=0.345 Sum_probs=54.5
Q ss_pred CeEEEEEccCCC-HHHHHHHHHHHHHcCCcEEEEEecC---CCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccC
Q 013729 270 PRIGIIMGSDSD-LPVMKDAAKILTMFSVPHEVRIVSA---HRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA 344 (437)
Q Consensus 270 ~~V~ii~gs~sD-~~~~~~~~~~L~~~G~~~~~~v~s~---hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~ 344 (437)
.++.||++.... .....++.+.|++.|+++..- +. +-+.+.+.+..+.+++.+++++|++.||+. ....+++.
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f--~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~ 100 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEVF--DGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGL 100 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEE--CCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHH
Confidence 356677754433 256778888899999886432 22 223344555566677788999999888763 34434332
Q ss_pred C------------------CCCCEEeccCC
Q 013729 345 R------------------TPLPVIGVPVR 356 (437)
Q Consensus 345 ~------------------~~~pVi~~p~~ 356 (437)
. ...|+|.+|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 101 LLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 1 25799999985
No 153
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=85.18 E-value=1.3 Score=44.80 Aligned_cols=86 Identities=21% Similarity=0.217 Sum_probs=57.1
Q ss_pred eEEEEEccCC-CHHHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccC---
Q 013729 271 RIGIIMGSDS-DLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA--- 344 (437)
Q Consensus 271 ~V~ii~gs~s-D~~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~--- 344 (437)
++.|+++... ......++.+.|++.|+.+..- -+..|-+-+.+.+.++.+++.+++++|++.||+. ....+++.
T Consensus 26 ~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~ 105 (370)
T cd08192 26 RPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAG 105 (370)
T ss_pred eEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHh
Confidence 5656665332 2235788889999989886432 2345666667777788888889999999887653 33333321
Q ss_pred -------------------CCCCCEEeccCC
Q 013729 345 -------------------RTPLPVIGVPVR 356 (437)
Q Consensus 345 -------------------~~~~pVi~~p~~ 356 (437)
....|+|.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 136 (370)
T cd08192 106 HPGPLWDYEDIEGGWPRITDAIPPLIAIPTT 136 (370)
T ss_pred CCCCHHHHhcccccccccCCCCCCEEEecCC
Confidence 124799999984
No 154
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=84.76 E-value=1.8 Score=44.02 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=56.2
Q ss_pred CeEEEEEccCCC--HHHHHHHHHHHHHcCCcEEE-EEecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccC-
Q 013729 270 PRIGIIMGSDSD--LPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA- 344 (437)
Q Consensus 270 ~~V~ii~gs~sD--~~~~~~~~~~L~~~G~~~~~-~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~- 344 (437)
.++.||++..+- ......+.+.|+..|+.+.. .-+.+|-+.+.+.+.++.+++.+++++|++.||+. ....+++.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 108 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAG 108 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhH
Confidence 356567654332 23456788889998887532 11234555566777777778889999999888764 33333322
Q ss_pred -----------------CCCCCEEeccCC
Q 013729 345 -----------------RTPLPVIGVPVR 356 (437)
Q Consensus 345 -----------------~~~~pVi~~p~~ 356 (437)
....|+|.+|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 109 APYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred hhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 245799999984
No 155
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=84.71 E-value=1.2 Score=45.15 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=55.5
Q ss_pred CeEEEEEccCCCH-HHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccC--
Q 013729 270 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA-- 344 (437)
Q Consensus 270 ~~V~ii~gs~sD~-~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~-- 344 (437)
.++.|+++..... ..+.++.+.|+..|+.+..- -+..|-+-+.+.+..+.+++.+++++|++.||+. ....+++.
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~ 106 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARA 106 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHH
Confidence 3666676543322 24677888888888875421 1234555666777777778889999999887753 33333321
Q ss_pred -C----------------CCCCEEeccCC
Q 013729 345 -R----------------TPLPVIGVPVR 356 (437)
Q Consensus 345 -~----------------~~~pVi~~p~~ 356 (437)
+ ...|+|.+|+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 135 (374)
T cd08189 107 ANPKKSLRKLTGLLKVKKPLPPLFAIPTT 135 (374)
T ss_pred hCCCCCHHHHhCccccCCCCCCEEEEECC
Confidence 1 12699999984
No 156
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=84.55 E-value=2.2 Score=43.31 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=47.5
Q ss_pred CeEEEEEccCC--CHHHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc
Q 013729 270 PRIGIIMGSDS--DLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 336 (437)
Q Consensus 270 ~~V~ii~gs~s--D~~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~ 336 (437)
.++.||++..+ ......++.+.|+..|+.+..- -+..+=+-+.+.+..+.+++.+++++|++.||+.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~ 95 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSS 95 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 36667876554 3456778888999999886431 2334556666777777788889999999888763
No 157
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=84.46 E-value=1.6 Score=44.68 Aligned_cols=67 Identities=19% Similarity=0.104 Sum_probs=44.9
Q ss_pred CeEEEEEccCC-CHHHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc
Q 013729 270 PRIGIIMGSDS-DLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 336 (437)
Q Consensus 270 ~~V~ii~gs~s-D~~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~ 336 (437)
.++.||++... +......+.+.|++.|+.+..- -+..+-+.+.+.+..+.+++.+++++|++.||+.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSP 90 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 35656664321 2236677888999999876432 1334555567777777788889999999887653
No 158
>PLN02834 3-dehydroquinate synthase
Probab=83.97 E-value=3.3 Score=42.86 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=59.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEE--EEec---CCCChhHHHHhHhhhhhcCCe---EEEEecccc-ccccC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEV--RIVS---AHRTPDLMFSYASSAHERGIE---IIIAGAGGA-AHLPG 340 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~--~v~s---~hr~p~~~~~~~~~~~~~g~~---v~i~~ag~~-~~l~~ 340 (437)
.++.+|+...........+.+.|+..|+++.. .+.. .+.+.+.+.+..+.+.+.|++ ++|++.||. .++.+
T Consensus 101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak 180 (433)
T PLN02834 101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCG 180 (433)
T ss_pred CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHH
Confidence 35657765444444666677888888987554 2222 246667677777777788877 899888764 57887
Q ss_pred cccC--CCCCCEEeccCC
Q 013729 341 MVAA--RTPLPVIGVPVR 356 (437)
Q Consensus 341 ~i~~--~~~~pVi~~p~~ 356 (437)
+++. ..-.|+|.+|+.
T Consensus 181 ~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 181 FAAASYQRGVNFVQIPTT 198 (433)
T ss_pred HHHHHhcCCCCEEEECCc
Confidence 7753 456799999995
No 159
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=83.44 E-value=2.5 Score=42.98 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=56.4
Q ss_pred CeEEEEEccCCC--HHHHHHHHHHHHHcCCcEEEEE-ecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccC-
Q 013729 270 PRIGIIMGSDSD--LPVMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA- 344 (437)
Q Consensus 270 ~~V~ii~gs~sD--~~~~~~~~~~L~~~G~~~~~~v-~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~- 344 (437)
.++.|+++..+- .....++.+.|++.|+++..-. +..+-+.+.+.+..+.+++.+++++|++.||+. +...+++.
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 106 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAIL 106 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 356566654321 2335778888999998754321 234556677778888888889999999887653 33333321
Q ss_pred ------------------CCCCCEEeccCC
Q 013729 345 ------------------RTPLPVIGVPVR 356 (437)
Q Consensus 345 ------------------~~~~pVi~~p~~ 356 (437)
....|+|.+|+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 107 LEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred HhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 135799999984
No 160
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=83.28 E-value=2 Score=43.14 Aligned_cols=86 Identities=22% Similarity=0.254 Sum_probs=63.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 348 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 348 (437)
.++.+++|.....-....+.+.|+..|+....- ...+=+-+++.+..+.+.+.+.+++|++.||. -...-+++-...+
T Consensus 31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~ 109 (360)
T COG0371 31 SRALVVTGENTYAIAGEKVEKSLKDEGLVVHVV-FVGEASEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGL 109 (360)
T ss_pred CceEEEEChhHHHHHHHHHHHHhcccCcceeee-ecCccCHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 345578877666666677788889999843333 33466667777777666656789999988764 4778888889999
Q ss_pred CEEeccCC
Q 013729 349 PVIGVPVR 356 (437)
Q Consensus 349 pVi~~p~~ 356 (437)
|+|.+|+.
T Consensus 110 pfIsvPT~ 117 (360)
T COG0371 110 PFISVPTI 117 (360)
T ss_pred CEEEecCc
Confidence 99999995
No 161
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=82.59 E-value=1.6 Score=43.73 Aligned_cols=84 Identities=25% Similarity=0.217 Sum_probs=54.6
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCCCC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPLP 349 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~p 349 (437)
++.||++...-......+.+.|+..++.+ .+.+---+-+.+.+..+.+++.+++++|++.||+ -++..+++.....|
T Consensus 25 ~~liv~d~~~~~~~~~~l~~~L~~~~~~~--~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~p 102 (347)
T cd08172 25 RPLIVTGPRSWAAAKPYLPESLAAGEAFV--LRYDGECSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGVP 102 (347)
T ss_pred eEEEEECHHHHHHHHHHHHHHHhcCeEEE--EEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCCC
Confidence 45566644332233344444554445443 2222225666677778888888999999988776 47788887777889
Q ss_pred EEeccCC
Q 013729 350 VIGVPVR 356 (437)
Q Consensus 350 Vi~~p~~ 356 (437)
+|.+|+.
T Consensus 103 ~i~VPTT 109 (347)
T cd08172 103 VITVPTL 109 (347)
T ss_pred EEEecCc
Confidence 9999985
No 162
>PRK10586 putative oxidoreductase; Provisional
Probab=82.55 E-value=3.2 Score=41.97 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=55.0
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccCCCCCC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPLP 349 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~p 349 (437)
++.+|+|..+-......+...|++.|+.+. +.+-+-+.+...+..+..+ .+++++|++.||+. +..-.++.....|
T Consensus 36 ~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~--~~~g~~~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~~~~p 112 (362)
T PRK10586 36 RAVWIYGERAIAAAQPYLPPAFELPGAKHI--LFRGHCSESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARRLGLP 112 (362)
T ss_pred eEEEEEChHHHHHHHHHHHHHHHHcCCeEE--EeCCCCCHHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhhcCCC
Confidence 565777665443333556677888887652 3344555555666655444 47899998887754 6666666777899
Q ss_pred EEeccCC
Q 013729 350 VIGVPVR 356 (437)
Q Consensus 350 Vi~~p~~ 356 (437)
+|.+|+.
T Consensus 113 ~i~vPT~ 119 (362)
T PRK10586 113 FVAIPTI 119 (362)
T ss_pred EEEEeCC
Confidence 9999984
No 163
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=82.25 E-value=2.9 Score=43.82 Aligned_cols=48 Identities=23% Similarity=0.145 Sum_probs=40.4
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
++ +||.++ +..+.+.++.|.++||++.+| -+ |.+|+ ++.|++|..+..
T Consensus 6 ~a-LISVsD--K~~iv~lAk~L~~lGfeI~AT----~G----Tak~L---~e~GI~v~~V~k 53 (513)
T PRK00881 6 RA-LISVSD--KTGIVEFAKALVELGVEILST----GG----TAKLL---AEAGIPVTEVSD 53 (513)
T ss_pred EE-EEEEeC--cccHHHHHHHHHHCCCEEEEc----ch----HHHHH---HHCCCeeEEeec
Confidence 44 777665 899999999999999999888 56 89999 678999887754
No 164
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=81.85 E-value=9.9 Score=38.08 Aligned_cols=84 Identities=23% Similarity=0.235 Sum_probs=55.3
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHH-cCCcEEEEEec---CCCChhHHHHhHhhhhhcC---CeEEEEecccc-ccccCcc
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVS---AHRTPDLMFSYASSAHERG---IEIIIAGAGGA-AHLPGMV 342 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~-~G~~~~~~v~s---~hr~p~~~~~~~~~~~~~g---~~v~i~~ag~~-~~l~~~i 342 (437)
++.+++...-.......+.+.|+. .++.+ .+.+ .+.+.+.+.+..+.+.+.| .+++|++.||+ .++.+++
T Consensus 25 k~livtd~~v~~~~~~~v~~~L~~~~~~~~--~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~v 102 (344)
T cd08169 25 QYFFISDSGVADLIAHYIAEYLSKILPVHI--LVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGATGDVAGFV 102 (344)
T ss_pred eEEEEECccHHHHHHHHHHHHHHhhcCceE--EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHH
Confidence 565666544444566677778876 55553 2333 3556666666666666655 67888888765 5788887
Q ss_pred cC--CCCCCEEeccCC
Q 013729 343 AA--RTPLPVIGVPVR 356 (437)
Q Consensus 343 ~~--~~~~pVi~~p~~ 356 (437)
+. +...|.|.+|+.
T Consensus 103 A~~~~rgip~i~VPTT 118 (344)
T cd08169 103 ASTLFRGIAFIRVPTT 118 (344)
T ss_pred HHHhccCCcEEEecCC
Confidence 75 446799999984
No 165
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=80.45 E-value=4 Score=41.36 Aligned_cols=66 Identities=21% Similarity=0.202 Sum_probs=45.1
Q ss_pred eEEEEEccCCC--HHHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc
Q 013729 271 RIGIIMGSDSD--LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 336 (437)
Q Consensus 271 ~V~ii~gs~sD--~~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~ 336 (437)
++.||++..+- .....++.+.|++.|+++..- -+..+-+.+.+.+..+.+++.+++++|++.||+.
T Consensus 25 r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSv 93 (375)
T cd08179 25 KAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSP 93 (375)
T ss_pred eEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 55567654332 245577888888888876422 1234666677777788888889999999888753
No 166
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=80.28 E-value=4 Score=40.61 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=51.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec--CCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS--AHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAART 346 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s--~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~ 346 (437)
.++.||++... ...+.+.|+..++ .+..+.. ..-+.+++.+.+...+ +.+++|++.||+ -++.++++...
T Consensus 26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~--~~d~iIaiGGGsv~D~aK~vA~~~ 98 (331)
T cd08174 26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVEEVSNSDAEEIGARARSIP--NVDAVVGIGGGKVIDVAKYAAFLR 98 (331)
T ss_pred CceEEEECCcH----HHHHHHHHHhccC-ceEEEecCCCccCHHHHHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHhhc
Confidence 35657764432 6677788888776 2223222 1223334444443322 478899888765 68899998888
Q ss_pred CCCEEeccCC
Q 013729 347 PLPVIGVPVR 356 (437)
Q Consensus 347 ~~pVi~~p~~ 356 (437)
..|+|.+|+.
T Consensus 99 ~~p~i~vPTt 108 (331)
T cd08174 99 GIPLSVPTTN 108 (331)
T ss_pred CCCEEEecCc
Confidence 9999999984
No 167
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=79.38 E-value=14 Score=29.54 Aligned_cols=30 Identities=3% Similarity=0.096 Sum_probs=27.4
Q ss_pred CceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 233 QRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 233 ~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
+.|+-.|++.|+|++||.+++++.++.+++
T Consensus 50 GGRvl~v~~~g~tl~eA~~~ay~~i~~I~~ 79 (93)
T PF02843_consen 50 GGRVLTVVALGDTLEEAREKAYEAIEKIDF 79 (93)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHTTSB-
T ss_pred CCeEEEEEEEcCCHHHHHHHHHHHHhccCC
Confidence 789999999999999999999999998874
No 168
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=79.08 E-value=3.8 Score=41.60 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=44.2
Q ss_pred eEEEEEccCCCH-HHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc
Q 013729 271 RIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 336 (437)
Q Consensus 271 ~V~ii~gs~sD~-~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~ 336 (437)
++.|+++....+ .....+.+.|++.|+.+..- -+..+-+-+.+.+..+.+++.+++++|++.||+.
T Consensus 31 r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSv 98 (379)
T TIGR02638 31 KALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSP 98 (379)
T ss_pred EEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 565666543222 25677888889889876432 1233555577777777788889999999887753
No 169
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=78.21 E-value=4.5 Score=41.10 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=54.2
Q ss_pred eEEEEEccCCC-HHHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCccc----
Q 013729 271 RIGIIMGSDSD-LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA---- 343 (437)
Q Consensus 271 ~V~ii~gs~sD-~~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~---- 343 (437)
++.|+++.... .....++.+.|++.|+.+..- -+..+-+-+.+.+..+.+++.+++++|++.||+. .+.-+++
T Consensus 32 ~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~ 111 (382)
T PRK10624 32 KALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISN 111 (382)
T ss_pred EEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHH
Confidence 56566653322 235677888899999876432 1223444466677777778889999999887653 2222211
Q ss_pred ----------------CCCCCCEEeccCC
Q 013729 344 ----------------ARTPLPVIGVPVR 356 (437)
Q Consensus 344 ----------------~~~~~pVi~~p~~ 356 (437)
-....|+|.+|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 112 NPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred CCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 0234799999985
No 170
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=78.17 E-value=16 Score=37.54 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=46.0
Q ss_pred CeEEEEEccCCC-HHHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc
Q 013729 270 PRIGIIMGSDSD-LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 336 (437)
Q Consensus 270 ~~V~ii~gs~sD-~~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~ 336 (437)
.++.|+++.... ...+.++.+.|++.|+.+..- -+..+-+.+.+.+.++.+++.+++++|++.||+.
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSv 92 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSV 92 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 356566654322 224678888899889886532 1234666677777788888899999999988753
No 171
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=77.52 E-value=5 Score=41.93 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=39.0
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 274 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 274 ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+||.++ |..+.+.++.|.++||++.+| -+ |.+++ ++.|++|..+..
T Consensus 4 LISVsD--K~~iv~lAk~L~~lGfeIiAT----gG----Tak~L---~e~GI~v~~Vsk 49 (511)
T TIGR00355 4 LLSVSD--KTGIVEFAQGLVERGVELLST----GG----TAKLL---AEAGVPVTEVSD 49 (511)
T ss_pred EEEEeC--cccHHHHHHHHHHCCCEEEEe----ch----HHHHH---HHCCCeEEEeec
Confidence 777665 899999999999999999888 56 89999 677999887744
No 172
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=77.45 E-value=4.3 Score=40.50 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=58.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCe-EEEEeccccccccCcccCCCCCCEEeccC
Q 013729 278 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIE-IIIAGAGGAAHLPGMVAARTPLPVIGVPV 355 (437)
Q Consensus 278 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~-v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 355 (437)
....-+.+...+...+..| +..-++|+|+.++....+.++++..|++ ++++.+|+++.|.-++.+++ .||=.+++
T Consensus 245 ~~~~t~~msr~a~~a~~~~--~~~~iaga~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V~~~~~-~~~~~v~v 320 (373)
T KOG2835|consen 245 DENTTPVMSRYATSAKSRG--VVLWIAGAYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIVQMPNG-VPVATVAV 320 (373)
T ss_pred eecCchhHhhhhhhcccCc--eEEEEeccCCCCCChhhHHhhccccCcceeeeecccccccccceeccCC-cccccccc
Confidence 3444566667677777787 5566679999999999999999999999 67889999999999999988 44443333
No 173
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=76.10 E-value=5.3 Score=40.64 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=54.6
Q ss_pred eEEEEEccC-CCHHHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCccc----
Q 013729 271 RIGIIMGSD-SDLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA---- 343 (437)
Q Consensus 271 ~V~ii~gs~-sD~~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~---- 343 (437)
++.|+++.. .....+.++.+.|++.|+.+..- -+.++=+-+.+.+..+.+++.+++++|++.||+. +.+-+++
T Consensus 33 ~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~ 112 (383)
T PRK09860 33 RTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAA 112 (383)
T ss_pred EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHH
Confidence 565666532 22346778888999999875221 1222445566777777888889999999887653 2221211
Q ss_pred --------------CCCCCCEEeccCC
Q 013729 344 --------------ARTPLPVIGVPVR 356 (437)
Q Consensus 344 --------------~~~~~pVi~~p~~ 356 (437)
.....|+|.+|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~p~iaIPTT 139 (383)
T PRK09860 113 NGGDIRDYEGVDRSAKPQLPMIAINTT 139 (383)
T ss_pred CCCCHHHHhCcCccCCCCCCEEEEeCC
Confidence 1246799999984
No 174
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=75.79 E-value=13 Score=39.68 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=53.7
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCC---CChhHHHHhHhhhhhc---CCeEEEEecccc-ccccCccc
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAH---RTPDLMFSYASSAHER---GIEIIIAGAGGA-AHLPGMVA 343 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h---r~p~~~~~~~~~~~~~---g~~v~i~~ag~~-~~l~~~i~ 343 (437)
++.+|+.. ........+.+.|+..|+.+...+.... ++.+...+..+.+.+. ..+++|+..||+ ..+++++|
T Consensus 211 k~~iV~d~-~v~~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA 289 (542)
T PRK14021 211 KVALIHTQ-PVQRHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVA 289 (542)
T ss_pred eEEEEECc-cHHHHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHH
Confidence 34355432 2233566777888889987654443211 2344444444444444 377888888764 69999998
Q ss_pred C--CCCCCEEeccCC
Q 013729 344 A--RTPLPVIGVPVR 356 (437)
Q Consensus 344 ~--~~~~pVi~~p~~ 356 (437)
+ +--.|+|.+|+.
T Consensus 290 ~~y~rGi~~i~vPTT 304 (542)
T PRK14021 290 ATWMRGIRYVNCPTS 304 (542)
T ss_pred HHHHcCCCEEEeCCh
Confidence 6 578999999995
No 175
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=74.58 E-value=5.5 Score=40.73 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc
Q 013729 283 PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 336 (437)
Q Consensus 283 ~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~ 336 (437)
....++.+.|++.|+.+..- -+..+=+.+.+.+.++.+++.+++++|++.||+.
T Consensus 64 g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~ 118 (395)
T PRK15454 64 GMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSV 118 (395)
T ss_pred ccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 44678888999999876432 1222333466777777888899999999988764
No 176
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=74.42 E-value=5.3 Score=40.54 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=43.0
Q ss_pred CeEEEEEccCCCH-HHHHHHHHHHHHcCCcEEEEE-ecCCCChhHHHHhHhhhhhcCCeEEEEeccccc
Q 013729 270 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 336 (437)
Q Consensus 270 ~~V~ii~gs~sD~-~~~~~~~~~L~~~G~~~~~~v-~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~ 336 (437)
.++.|+++..... ....++.+.|++.|+.+..-- +..+-+.+.+.+.++.+++.+++++|++.||+.
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsv 97 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSP 97 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 3565676543222 246778888898888764321 122334455666777778889999999988753
No 177
>PRK10481 hypothetical protein; Provisional
Probab=73.49 E-value=8.6 Score=36.04 Aligned_cols=79 Identities=14% Similarity=0.291 Sum_probs=50.5
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC-CCChhHHHHhHhhhhhcCCeEE-EEeccccccccCcccCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA-HRTPDLMFSYASSAHERGIEII-IAGAGGAAHLPGMVAARTP 347 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~-hr~p~~~~~~~~~~~~~g~~v~-i~~ag~~~~l~~~i~~~~~ 347 (437)
.++++++-. .+......+...+.|++......|. +.+++.+.+..+++.+.|++++ ..|.|.+-.....+...+.
T Consensus 130 ~riGVitP~---~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg 206 (224)
T PRK10481 130 HQVGVIVPV---EEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALD 206 (224)
T ss_pred CeEEEEEeC---HHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHC
Confidence 567788744 3445555566677799987776665 3556577777777777888844 5566665344555555555
Q ss_pred CCEE
Q 013729 348 LPVI 351 (437)
Q Consensus 348 ~pVi 351 (437)
+|||
T Consensus 207 ~PVI 210 (224)
T PRK10481 207 VPVL 210 (224)
T ss_pred cCEE
Confidence 5555
No 178
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=72.52 E-value=9.4 Score=33.40 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHH--cCCcEE-EEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 282 LPVMKDAAKILTM--FSVPHE-VRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 282 ~~~~~~~~~~L~~--~G~~~~-~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
...+..+.+.|++ .|.+++ .+|-++.=.|-...++. +..+++.+|+
T Consensus 12 ~~M~~gA~~~L~~~g~g~~i~v~~VPGa~EiP~aak~l~---~~~~~DaVIa 60 (151)
T TIGR01506 12 YDMGGAAIDELRKHTAGIKIIRRTVPGIKDLPVAAKKLL---EEEGCEMVIT 60 (151)
T ss_pred hhHHHHHHHHHHhcCCCCeEEEEECCcHhHHHHHHHHHH---hcCCCCEEEE
Confidence 4556777788888 666665 66666665565444444 3345776665
No 179
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=71.20 E-value=52 Score=32.64 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhccCCcc-------cccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 247 GLVESRLNSLLKEDSSD-------CQFKILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 247 ~eA~~k~~~a~~~i~~~-------~~~~~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
+|..+|..++++++... ....+.+.|+++...-++ .+.+..+.+.+++.|+.+-+. ..+.+|++..++
T Consensus 29 ~eTr~kV~~a~~elgY~pN~~Ar~L~~~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~~l~--~~~~~~~~e~~~ 106 (333)
T COG1609 29 EETREKVLAAIKELGYRPNAVARSLRTGRTKTIGLVVPDITNPFFAEILKGIEEAAREAGYSLLLA--NTDDDPEKEREY 106 (333)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEE--CCCCCHHHHHHH
Confidence 45666666666554332 111234567787654444 455666677888899886665 445578888888
Q ss_pred HhhhhhcCCeEEEEec-cccccccCcccCCCCCCEEec
Q 013729 317 ASSAHERGIEIIIAGA-GGAAHLPGMVAARTPLPVIGV 353 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~a-g~~~~l~~~i~~~~~~pVi~~ 353 (437)
++.+..++++=+|... .....+...+... ..|++-+
T Consensus 107 ~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~-~~P~V~i 143 (333)
T COG1609 107 LETLLQKRVDGLILLGERPNDSLLELLAAA-GIPVVVI 143 (333)
T ss_pred HHHHHHcCCCEEEEecCCCCHHHHHHHHhc-CCCEEEE
Confidence 8888888899444433 2333344444332 5666654
No 180
>PRK05849 hypothetical protein; Provisional
Probab=70.35 E-value=1.3e+02 Score=33.78 Aligned_cols=143 Identities=11% Similarity=0.127 Sum_probs=79.6
Q ss_pred CHHHHHHHHHhh--CCcEEEEecCCC-----CCCcCe--EEe--C--CHHHHHHHHHHhc-C----CCCcEEEeeccCCC
Q 013729 5 DLESARRAGKQF--GYPLMVKSKRLA-----YDGRGN--AVA--K--SEEELSSAITALG-G----FDRGLYVEKWAPFV 66 (437)
Q Consensus 5 s~~e~~~~a~~~--gyPvvvKP~~~g-----~gg~Gv--~~v--~--~~~el~~~~~~~~-~----~~~~~lvEe~I~g~ 66 (437)
+.+.+.+.+... +-|++|+.+..+ .+..|. .+. . +.++|..++.... + ....++||+.|.+
T Consensus 41 ~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~~~~~aVlVQ~MV~~- 119 (783)
T PRK05849 41 NKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGTSKDDEILVQPMLED- 119 (783)
T ss_pred CHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCCCCCCeEEEEeCccC-
Confidence 444554544432 469999987521 122333 332 2 2347887776542 1 1245999999973
Q ss_pred eEEEEEEEE-cC-CCc---eEEee---eeeeEEecCceE---EEE---eCCCCCHHHHHHHHHHHHHHHHHcCCceEEEE
Q 013729 67 KELAVIVVR-GR-DKS---ILCYP---VVETIHKENICH---IVK---APAAVPWKISELATDVAHKAVSSLEGAGIFAV 132 (437)
Q Consensus 67 ~E~sv~~~~-d~-~G~---~~~~~---~~e~~~~~g~~~---~~~---~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~v 132 (437)
...+-.++. |. +|+ +..|. ..+.+ .+|... ..+ .+..++++..+++.+++.++-+.+|. .+.-|
T Consensus 120 ~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~V-VsG~~t~~~~~~~~~~~~~l~p~~~~~L~~la~~LE~~fg~-dpqDI 197 (783)
T PRK05849 120 IVLSGVAMSRDPESGAPYYVINYDESGSTDSV-TSGSGGSATTVYHYRDALVFKPPRLKKLIELIRELEALFGC-DFLDI 197 (783)
T ss_pred CCceEEEEECCCCCCCCceEEEEcCCCCCcce-ecccCCCCceeeeccccccCCHHHHHHHHHHHHHHHHHcCC-CCeee
Confidence 334433332 21 121 11111 11111 112111 011 12347788889999999998888764 38899
Q ss_pred EEEEeCCCcEEEEEEcCC
Q 013729 133 ELFWTNNGQILLNEVAPR 150 (437)
Q Consensus 133 e~~~~~dg~~~viEiNpR 150 (437)
||.++++|++|++-+-|-
T Consensus 198 Efaid~~g~L~lLQ~RPi 215 (783)
T PRK05849 198 EFAIDEKEELYILQVRPI 215 (783)
T ss_pred EEEEccCCEEEEEEccCC
Confidence 999987899999876553
No 181
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=69.55 E-value=23 Score=27.23 Aligned_cols=57 Identities=21% Similarity=0.190 Sum_probs=39.7
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
.|.|+..+..+...+.+++..|+..|+.++.... .+++..- ++.+...|++..+...
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~--~~~~~~~---~~~a~~~g~~~~iiig 59 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR--NEKLGKK---IREAQLQKIPYILVVG 59 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC--CCCHHHH---HHHHHHcCCCEEEEEC
Confidence 3445555666788999999999999999887642 3554444 4444778999666554
No 182
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=68.51 E-value=11 Score=33.77 Aligned_cols=83 Identities=20% Similarity=0.364 Sum_probs=44.3
Q ss_pred CCChhHHHHhHhhh-hhcCCeEEEEeccccccccCcccCCCCCCEEeccCCCCCCCChhhHHHhhhC--CCCCceEEEEe
Q 013729 307 HRTPDLMFSYASSA-HERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQM--PRGVPVATVAI 383 (437)
Q Consensus 307 hr~p~~~~~~~~~~-~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~~~~~~--~~gvp~~tv~~ 383 (437)
..+.++..+..+++ ...|++|+|.-.|. +.+|+.++..|||.+|.+ +.| +++.++. -.|-.++.++-
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG~t----a~~lr~~~~iPVV~I~~s-----~~D-il~al~~a~~~~~~Iavv~~ 85 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRGGT----AELLRKHVSIPVVEIPIS-----GFD-ILRALAKAKKYGPKIAVVGY 85 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEHHH----HHHHHCC-SS-EEEE--------HHH-HHHHHHHCCCCTSEEEEEEE
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECCHH----HHHHHHhCCCCEEEECCC-----HhH-HHHHHHHHHhcCCcEEEEec
Confidence 45566677777777 77899999876543 345667778999999986 333 3444433 22222555554
Q ss_pred CCcchHHHHHHHHHcc
Q 013729 384 NNATNAGLLAVRMLGF 399 (437)
Q Consensus 384 ~~~~~aa~~a~~~l~~ 399 (437)
.+-........++|++
T Consensus 86 ~~~~~~~~~~~~ll~~ 101 (176)
T PF06506_consen 86 PNIIPGLESIEELLGV 101 (176)
T ss_dssp SS-SCCHHHHHHHHT-
T ss_pred ccccHHHHHHHHHhCC
Confidence 5555555566666665
No 183
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=68.44 E-value=27 Score=35.41 Aligned_cols=86 Identities=24% Similarity=0.288 Sum_probs=56.3
Q ss_pred eEEEEEccC-CCHHHHHHHHHHHHHcCCcEEEEE-ecCCCChhHHHHhHhhhhhcCCeEEEEeccccc----cccCcccC
Q 013729 271 RIGIIMGSD-SDLPVMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA----HLPGMVAA 344 (437)
Q Consensus 271 ~V~ii~gs~-sD~~~~~~~~~~L~~~G~~~~~~v-~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~----~l~~~i~~ 344 (437)
++.||+... .....+.++.+.|+..|+++.+-- +..+=+-+.+.+-++.+++.+++++|+..||+. -+..++..
T Consensus 31 r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~ 110 (377)
T COG1454 31 RALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAE 110 (377)
T ss_pred ceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhh
Confidence 454665432 345689999999999997754321 223444455566677888999999999998874 22222222
Q ss_pred CC---------------CCCEEeccCC
Q 013729 345 RT---------------PLPVIGVPVR 356 (437)
Q Consensus 345 ~~---------------~~pVi~~p~~ 356 (437)
+. ..|+|.+|+.
T Consensus 111 ~~~~~~~~~~i~~~~~~~~plIaIPTT 137 (377)
T COG1454 111 NPGSVLDYEGIGKVKKPKAPLIAIPTT 137 (377)
T ss_pred CCchhhhhcccccccCCCCCEEEecCC
Confidence 21 2799999985
No 184
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=67.56 E-value=9 Score=38.09 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=51.4
Q ss_pred eEEEEEccCCCH-HHHHHHHHHHHHcCCcEEE-EEecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcc---cC
Q 013729 271 RIGIIMGSDSDL-PVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMV---AA 344 (437)
Q Consensus 271 ~V~ii~gs~sD~-~~~~~~~~~L~~~G~~~~~-~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i---~~ 344 (437)
++.++++..... .....+.+.|++. +.+.. .-+..+.+.+.+.+.++.+++.+++++|++.||+. +....+ ..
T Consensus 24 ~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~ 102 (332)
T cd08180 24 RVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAK 102 (332)
T ss_pred eEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHh
Confidence 555666532222 2455666677665 55421 11234666676777777788889999999888764 333322 11
Q ss_pred ----CCCCCEEeccCC
Q 013729 345 ----RTPLPVIGVPVR 356 (437)
Q Consensus 345 ----~~~~pVi~~p~~ 356 (437)
....|+|.+|+.
T Consensus 103 ~~~~~~~~p~i~VPTt 118 (332)
T cd08180 103 KLGKKKKPLFIAIPTT 118 (332)
T ss_pred CCCCCCCCCEEEeCCC
Confidence 234799999984
No 185
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=67.55 E-value=17 Score=38.77 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=75.9
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH-hhhhhcCCeEEEEeccccccccCcccCCCC
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA-SSAHERGIEIIIAGAGGAAHLPGMVAARTP 347 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~-~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 347 (437)
.+.+..++.| .-..-+.+...+++...+++++ .+..++..+.. +.+...|++|+|...|. +.+|...+.
T Consensus 14 ~p~~~~~~~~----~l~~~~~~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~dviIsrG~t----a~~i~~~~~ 83 (538)
T PRK15424 14 KPVIWTVSVS----RLFELFRDISLEFDHLANITPI--QLGFEKAVTYIRKRLATERCDAIIAAGSN----GAYLKSRLS 83 (538)
T ss_pred CCeEEEeeHH----HHHHHHHHHHHhcCCCceEEeh--hhhHHHHHHHHHHHHhhCCCcEEEECchH----HHHHHhhCC
Confidence 4555444433 2333334555677776666643 46667677776 44667789998875433 345667889
Q ss_pred CCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHccC--------ChHHHHHHHHHHH
Q 013729 348 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFG--------DADLRARMQQYME 413 (437)
Q Consensus 348 ~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~~--------~~~~~~~~~~~~~ 413 (437)
.|||-+++++ .|=+.+|...-..+.. ++.|+-.+-...+..-.++|++. ..+++..+++.+.
T Consensus 84 iPVv~i~~s~--~Dil~al~~a~~~~~~--iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~ 153 (538)
T PRK15424 84 VPVILIKPSG--FDVMQALARARKLTSS--IGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKA 153 (538)
T ss_pred CCEEEecCCH--hHHHHHHHHHHhcCCc--EEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence 9999999862 3333333333333333 55665556666666666666653 3355555555444
No 186
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=66.61 E-value=6.5 Score=38.29 Aligned_cols=110 Identities=16% Similarity=0.188 Sum_probs=58.1
Q ss_pred CCeEEEEEccCCCHHHH-----HHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec----ccccccc
Q 013729 269 LPRIGIIMGSDSDLPVM-----KDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA----GGAAHLP 339 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~-----~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a----g~~~~l~ 339 (437)
+.+|++++|++|+-... ..+.+.|+++|++++.-.. .. ...+.+ +..++++++... |....++
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~--~~---~~~~~~---~~~~~D~v~~~~~g~~~~~~~~~ 75 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDP--GE---DIAAQL---KELGFDRVFNALHGRGGEDGTIQ 75 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEec--Cc---chHHHh---ccCCCCEEEEecCCCCCCccHHH
Confidence 34788999987765444 7889999999999766522 21 133333 344677554432 2334455
Q ss_pred CcccCCCCCCEEeccCCCCCCCChhhHHHhhhCCCCCceE-EEEeCCcc
Q 013729 340 GMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVA-TVAINNAT 387 (437)
Q Consensus 340 ~~i~~~~~~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~-tv~~~~~~ 387 (437)
+++. ..-.|++|.+......-.--.+.+.+.--.|||+. +..+.+..
T Consensus 76 ~~le-~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~ 123 (304)
T PRK01372 76 GLLE-LLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTREE 123 (304)
T ss_pred HHHH-HcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcc
Confidence 5543 33566666543211110111122333335667766 55444443
No 187
>PLN02891 IMP cyclohydrolase
Probab=66.12 E-value=10 Score=39.85 Aligned_cols=48 Identities=15% Similarity=0.012 Sum_probs=39.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
.+-++||. |||.-+.+.++.|.++|+++.+| -+ |.+++ ++.|++|.-+
T Consensus 22 ~krALISV--sDKtgi~~fAk~L~~~gveIiST----gG----Tak~L---~e~Gi~v~~V 69 (547)
T PLN02891 22 KKQALISL--SDKTDLALLANGLQELGYTIVST----GG----TASAL---EAAGVSVTKV 69 (547)
T ss_pred ccEEEEEE--ecccCHHHHHHHHHHCCCEEEEc----ch----HHHHH---HHcCCceeeH
Confidence 45567764 57899999999999999998887 67 79998 6779998866
No 188
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=65.94 E-value=1.1e+02 Score=28.20 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=30.1
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS 305 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s 305 (437)
..+|.|++|.-.+=-...-+++.|...|+.+++-...
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~ 85 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLG 85 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeC
Confidence 3468899999888888999999999999877666543
No 189
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=64.82 E-value=13 Score=42.13 Aligned_cols=67 Identities=22% Similarity=0.098 Sum_probs=43.1
Q ss_pred CeEEEEEccCCC-HHHHHHHHHHHH--HcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc
Q 013729 270 PRIGIIMGSDSD-LPVMKDAAKILT--MFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 336 (437)
Q Consensus 270 ~~V~ii~gs~sD-~~~~~~~~~~L~--~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~ 336 (437)
.++.||++.... ......+.+.|+ ..|+.+..- -+..+-+.+.+.+....+++.+++++|++.||+.
T Consensus 481 ~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGSv 551 (862)
T PRK13805 481 KRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSP 551 (862)
T ss_pred CEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 356567654322 235667778887 666654321 1223555577778888888899999999887753
No 190
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=63.83 E-value=20 Score=28.02 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=38.9
Q ss_pred EEEEEccC---CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 272 IGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 272 V~ii~gs~---sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
|+|+..++ ...+.+.+++..|...|+.++... -+++ +.+=++++...|++..+++.
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~---~~k~~~~a~~~g~p~~iiiG 60 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKS---LGKQIKYADKLGIPFIIIIG 60 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSST---HHHHHHHHHHTTESEEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCc---hhHHHHHHhhcCCeEEEEEC
Confidence 44666565 456778899999999998888773 2443 45555666788999555543
No 191
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=63.30 E-value=19 Score=36.72 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=53.3
Q ss_pred CeEEEEEccCCCH---HHHHHHHHHHHHcCCcEEE--EE---e---cCCCChhHHHHhHhhhhhcCCe---EEEEecccc
Q 013729 270 PRIGIIMGSDSDL---PVMKDAAKILTMFSVPHEV--RI---V---SAHRTPDLMFSYASSAHERGIE---IIIAGAGGA 335 (437)
Q Consensus 270 ~~V~ii~gs~sD~---~~~~~~~~~L~~~G~~~~~--~v---~---s~hr~p~~~~~~~~~~~~~g~~---v~i~~ag~~ 335 (437)
.++.+|+...-.. +....+.+.|+..|+++.. .+ . ..+-+++.+.+..+.+.+.+++ ++|+..||+
T Consensus 43 ~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGs 122 (389)
T PRK06203 43 KKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGGA 122 (389)
T ss_pred CeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcH
Confidence 4565666322111 2345667777777876532 11 1 1222335566666667777777 899888775
Q ss_pred -ccccCcccC--CCCCCEEeccCC
Q 013729 336 -AHLPGMVAA--RTPLPVIGVPVR 356 (437)
Q Consensus 336 -~~l~~~i~~--~~~~pVi~~p~~ 356 (437)
-+++++++. +.-.|.|.+|+.
T Consensus 123 v~D~ak~iA~~~~rgip~I~IPTT 146 (389)
T PRK06203 123 VLDMVGYAAATAHRGVRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCC
Confidence 577788764 335799999985
No 192
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=62.28 E-value=20 Score=27.86 Aligned_cols=57 Identities=14% Similarity=-0.088 Sum_probs=38.8
Q ss_pred eEEEEEccC---CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 271 RIGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 271 ~V~ii~gs~---sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
.|+|+..++ .+.+.+.+++..|+..|+.++.... .++ +.+-++.+...|++.++++.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~--~~~---l~k~i~~a~~~g~~~~iiiG 62 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR--NER---PGVKFADADLIGIPYRIVVG 62 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC--CCC---cccchhHHHhcCCCEEEEEC
Confidence 455776665 3567888889999999999887632 233 44445566788999555543
No 193
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=61.97 E-value=25 Score=35.68 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=53.4
Q ss_pred CeEEEEEccCCCH---HHHHHHHHHHHHcCCcEE--EEE----e-cCCCC-hhHHHHhHhhhhhcCCe---EEEEecccc
Q 013729 270 PRIGIIMGSDSDL---PVMKDAAKILTMFSVPHE--VRI----V-SAHRT-PDLMFSYASSAHERGIE---IIIAGAGGA 335 (437)
Q Consensus 270 ~~V~ii~gs~sD~---~~~~~~~~~L~~~G~~~~--~~v----~-s~hr~-p~~~~~~~~~~~~~g~~---v~i~~ag~~ 335 (437)
.++.+|+...-.. +....+.+.|+..|++++ ..+ . -.+++ ++.+.+..+.+.+.|++ ++|+..||.
T Consensus 31 ~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~ 110 (369)
T cd08198 31 PKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGA 110 (369)
T ss_pred CeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECChH
Confidence 3555665332221 223566667777785543 211 1 11233 35456666667777887 888888775
Q ss_pred -ccccCcccC--CCCCCEEeccCC
Q 013729 336 -AHLPGMVAA--RTPLPVIGVPVR 356 (437)
Q Consensus 336 -~~l~~~i~~--~~~~pVi~~p~~ 356 (437)
..+++++|+ +--.|.|.+|+.
T Consensus 111 v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 111 VLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 688888875 446899999986
No 194
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=60.14 E-value=60 Score=26.74 Aligned_cols=52 Identities=21% Similarity=0.153 Sum_probs=31.8
Q ss_pred EEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC
Q 013729 300 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 356 (437)
Q Consensus 300 ~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~ 356 (437)
-+-++|..|.+..+.+.++.++++|++++.......+.+. ....-+|-+|..
T Consensus 63 ~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~-----~~~d~~i~~~~~ 114 (139)
T cd05013 63 VVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLA-----KLADIVLLVSSE 114 (139)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhH-----HhcCEEEEcCCC
Confidence 3445566777777888888888888886554432332222 234456666664
No 195
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=58.91 E-value=18 Score=36.33 Aligned_cols=51 Identities=16% Similarity=0.064 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhc---CCeEEEEeccccc
Q 013729 286 KDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHER---GIEIIIAGAGGAA 336 (437)
Q Consensus 286 ~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~---g~~v~i~~ag~~~ 336 (437)
..+.+.|+..|+.+..- -+..+=+.+.+.+..+.+++. +++++|++.||+.
T Consensus 39 ~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~ 93 (347)
T cd08184 39 KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGST 93 (347)
T ss_pred hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHH
Confidence 56677788888875432 122334444456666666666 8999999888753
No 196
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=58.37 E-value=1.8e+02 Score=28.60 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=63.4
Q ss_pred CCCeEEEEEccCC-----CHH----HHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccc
Q 013729 268 ILPRIGIIMGSDS-----DLP----VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL 338 (437)
Q Consensus 268 ~~~~V~ii~gs~s-----D~~----~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l 338 (437)
..+.++++.|+++ |.. .+..+.+.++..|..+.++ .-.|||.++.+.+++.-+..-.+.+-...+.|-+
T Consensus 145 ~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vt--tSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy 222 (311)
T PF06258_consen 145 PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVT--TSRRTPPEAEAALRELLKDNPGVYIWDGTGENPY 222 (311)
T ss_pred CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEE--cCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcH
Confidence 4578888888765 223 3345555666677555554 4599999999998766543333433344456667
Q ss_pred cCcccCCCCCCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC
Q 013729 339 PGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN 384 (437)
Q Consensus 339 ~~~i~~~~~~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~ 384 (437)
.++++. ..-|+-++-|.+ +=+.++..|.||.++...
T Consensus 223 ~~~La~--ad~i~VT~DSvS--------MvsEA~~tG~pV~v~~l~ 258 (311)
T PF06258_consen 223 LGFLAA--ADAIVVTEDSVS--------MVSEAAATGKPVYVLPLP 258 (311)
T ss_pred HHHHHh--CCEEEEcCccHH--------HHHHHHHcCCCEEEecCC
Confidence 777743 344554433321 234456788999987644
No 197
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=58.26 E-value=37 Score=36.18 Aligned_cols=95 Identities=14% Similarity=0.211 Sum_probs=56.9
Q ss_pred HHcCCcEEEEEecCCCChhHHHHhH-hhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCCCCCCCChhhHHHhhh
Q 013729 293 TMFSVPHEVRIVSAHRTPDLMFSYA-SSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQ 371 (437)
Q Consensus 293 ~~~G~~~~~~v~s~hr~p~~~~~~~-~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~~~~~ 371 (437)
.++....++++. -+..++..+.. +.+...|++|+|.-.|. +.+|...+..|||-++++ |+| +++.++
T Consensus 24 ~~~~~~~~~~v~--~~~~~~~~~~a~~~~~~~~~dviIsrG~t----a~~i~~~~~iPVv~i~~s-----~~D-il~al~ 91 (526)
T TIGR02329 24 PEFDHRANITPI--QLGFEDAVREIRQRLGAERCDVVVAGGSN----GAYLKSRLSLPVIVIKPT-----GFD-VMQALA 91 (526)
T ss_pred HhCCCCceEEEE--eccHHHHHHHHHHHHHhCCCcEEEECchH----HHHHHHhCCCCEEEecCC-----hhh-HHHHHH
Confidence 455533333332 45556666666 44567789998876432 345677889999999986 333 344443
Q ss_pred CCCCC--ceEEEEeCCcchHHHHHHHHHcc
Q 013729 372 MPRGV--PVATVAINNATNAGLLAVRMLGF 399 (437)
Q Consensus 372 ~~~gv--p~~tv~~~~~~~aa~~a~~~l~~ 399 (437)
-..+. .++.|+-.+-...+..-..+|++
T Consensus 92 ~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~ 121 (526)
T TIGR02329 92 RARRIASSIGVVTHQDTPPALRRFQAAFNL 121 (526)
T ss_pred HHHhcCCcEEEEecCcccHHHHHHHHHhCC
Confidence 32221 26666655666666666667765
No 198
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=57.61 E-value=75 Score=33.02 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCcEEEEEecC-CCChhHHHHhHhhhhhcCCeEEEE
Q 013729 284 VMKDAAKILTMFSVPHEVRIVSA-HRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 284 ~~~~~~~~L~~~G~~~~~~v~s~-hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
..+++.+.|+..|+++.. .+. -.++++..+..+.+++.+++.+|+
T Consensus 24 ~~~~~~~~l~~~~~~vv~--~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 69 (452)
T cd00578 24 YAREVADLLNELPVEVVD--KPEVTGTPDEARKAAEEFNEANCDGLIV 69 (452)
T ss_pred HHHHHHHHHhcCCceEEe--cCcccCCHHHHHHHHHHHhhcCCcEEEE
Confidence 344445555555554321 111 135666666666666666665554
No 199
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=57.55 E-value=67 Score=26.44 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=33.6
Q ss_pred EEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccC
Q 013729 301 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 355 (437)
Q Consensus 301 ~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 355 (437)
+-++|-.|...++.+.++.++++|++|+.......+.|... ..-++-+|.
T Consensus 51 vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~-----ad~~l~~~~ 100 (128)
T cd05014 51 VIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKL-----SDVVLDLPV 100 (128)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhh-----CCEEEECCC
Confidence 44567788888899999999999999776655444344332 334555554
No 200
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=57.53 E-value=19 Score=35.25 Aligned_cols=34 Identities=21% Similarity=0.460 Sum_probs=22.9
Q ss_pred CCeEEEEeccccccccCcccCCC----CCCEEeccCCC
Q 013729 324 GIEIIIAGAGGAAHLPGMVAART----PLPVIGVPVRA 357 (437)
Q Consensus 324 g~~v~i~~ag~~~~l~~~i~~~~----~~pVi~~p~~~ 357 (437)
.++.++++.|...-.+|++.+.. ..+||+||++.
T Consensus 180 ~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~ 217 (323)
T COG2515 180 KFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSA 217 (323)
T ss_pred CCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecC
Confidence 34555555555556666666655 88999999974
No 201
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=57.13 E-value=23 Score=38.83 Aligned_cols=126 Identities=15% Similarity=0.173 Sum_probs=68.4
Q ss_pred CCcEEEEecCCCCCCcCeEEeC--CH-HHHHHHHHHhcCC------------CCcEEEeeccC-CCeEEEEEEEEcC--C
Q 013729 17 GYPLMVKSKRLAYDGRGNAVAK--SE-EELSSAITALGGF------------DRGLYVEKWAP-FVKELAVIVVRGR--D 78 (437)
Q Consensus 17 gyPvvvKP~~~g~gg~Gv~~v~--~~-~el~~~~~~~~~~------------~~~~lvEe~I~-g~~E~sv~~~~d~--~ 78 (437)
.-|+|=||..+- -..|++-+ +. ..-++.|+.+++. .+.++-|||++ ++..+-|-.+.-. +
T Consensus 178 ~KPFVEKPVs~E--DHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaH 255 (1018)
T KOG1057|consen 178 QKPFVEKPVSAE--DHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAH 255 (1018)
T ss_pred cCCcccCCCCcc--cccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhh
Confidence 458999996432 23333322 11 1233445544321 25699999998 3355555444210 0
Q ss_pred CceEEeeee-eeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCC
Q 013729 79 KSILCYPVV-ETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPR 150 (437)
Q Consensus 79 G~~~~~~~~-e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR 150 (437)
-+..-.|.. ..+.++.+....-.|.-|+++. +.+|.+++-|++- -+|++|++. .+|+-||++||.-
T Consensus 256 AEaRKSPvvDGkV~Rns~GKEvRYpv~Ls~~E----K~iA~KVciAF~Q-~VCGFDLLR-a~G~SYVcDVNGf 322 (1018)
T KOG1057|consen 256 AEARKSPVVDGKVERNSDGKEVRYPVILNSSE----KQIARKVCIAFKQ-TVCGFDLLR-ANGKSYVCDVNGF 322 (1018)
T ss_pred hhhccCccccceeeecCCCceeeceeecChhh----HHHHhHHHhhccc-cccchHHhh-cCCceEEEeccce
Confidence 011112222 1223333323344677677643 4578888888763 478889766 4899999999953
No 202
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=56.68 E-value=74 Score=28.18 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=45.1
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEE---------------EEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccc
Q 013729 274 IIMGSDSDLPVMKDAAKILTMFSVPHE---------------VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL 338 (437)
Q Consensus 274 ii~gs~sD~~~~~~~~~~L~~~G~~~~---------------~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l 338 (437)
++.|.......+......|..+|..+. +-++|-.|...++.+.++.++++|++++....-..+.|
T Consensus 34 ~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~l 113 (179)
T TIGR03127 34 FVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTL 113 (179)
T ss_pred EEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 455544445555666666666664431 33456566677788888888888988765544233333
Q ss_pred cCcccCCCCCCEEeccCC
Q 013729 339 PGMVAARTPLPVIGVPVR 356 (437)
Q Consensus 339 ~~~i~~~~~~pVi~~p~~ 356 (437)
.. ...-++-+|..
T Consensus 114 a~-----~ad~~l~~~~~ 126 (179)
T TIGR03127 114 GK-----LADVVVEIPAA 126 (179)
T ss_pred HH-----hCCEEEEeCCc
Confidence 33 23456666654
No 203
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=56.61 E-value=13 Score=37.45 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=32.5
Q ss_pred eEEEEEccCCC-HHHHHHHHHHHHHcCCcEEE-EEecCCCChhHHHHhHhhhhhcC--CeEEEEeccccc
Q 013729 271 RIGIIMGSDSD-LPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERG--IEIIIAGAGGAA 336 (437)
Q Consensus 271 ~V~ii~gs~sD-~~~~~~~~~~L~~~G~~~~~-~v~s~hr~p~~~~~~~~~~~~~g--~~v~i~~ag~~~ 336 (437)
++.|+++.... ......+.+.|+.. .+.. .-+..+-+.+.+.+..+.+++.+ ++++|++.||+.
T Consensus 25 r~lvVtd~~~~~~g~~~~v~~~L~~~--~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGGSv 92 (355)
T TIGR03405 25 RVVVVTFPEARALGLARRLEALLGGR--LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSV 92 (355)
T ss_pred eEEEEECcchhhcchHHHHHHHhccC--cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCccH
Confidence 55566643221 23345555555432 2111 11223455555666666556656 888888877653
No 204
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=56.18 E-value=62 Score=28.70 Aligned_cols=61 Identities=21% Similarity=0.132 Sum_probs=42.8
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC-CCChhHHHHhHhhhhhcCCeEE
Q 013729 268 ILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA-HRTPDLMFSYASSAHERGIEII 328 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~-hr~p~~~~~~~~~~~~~g~~v~ 328 (437)
+.++|.|++|+..+=....-+++.|...|+++++-.... .+..+.....++.+++-|+++.
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEe
Confidence 567888999999888999999999999999987744432 2334445666667777676554
No 205
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=56.01 E-value=22 Score=29.21 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCCCh-hHHHHhHhhhhhcCCeEEEEeccccccccCc
Q 013729 283 PVMKDAAKILTMFSVPHEVRIVSAHRTP-DLMFSYASSAHERGIEIIIAGAGGAAHLPGM 341 (437)
Q Consensus 283 ~~~~~~~~~L~~~G~~~~~~v~s~hr~p-~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~ 341 (437)
..+..+.+.+.+.|++++..+...+ .| +.+.++ +++.++++++.+..+...+...
T Consensus 56 ~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~I~~~---a~~~~~dlIV~G~~~~~~~~~~ 111 (132)
T cd01988 56 KLLRQAERIAASLGVPVHTIIRIDH-DIASGILRT---AKERQADLIIMGWHGSTSLRDR 111 (132)
T ss_pred HHHHHHHHHhhhcCCceEEEEEecC-CHHHHHHHH---HHhcCCCEEEEecCCCCCccce
Confidence 4445555666778998877764323 34 334444 4677889888877555444333
No 206
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=55.89 E-value=41 Score=33.72 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=39.3
Q ss_pred CCCChhHHHHhHhhhhhcCC---eEEEEecccc-ccccCcccC--CCCCCEEeccCC
Q 013729 306 AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMVAA--RTPLPVIGVPVR 356 (437)
Q Consensus 306 ~hr~p~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i~~--~~~~pVi~~p~~ 356 (437)
.+.+.+.+.+..+.+.+.|+ +++|+..||+ -++++++|+ .--.|.|.+|+.
T Consensus 55 ~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~~rgi~~i~iPTT 111 (346)
T cd08196 55 ENKSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIYMRGVSWSFVPTT 111 (346)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHHcCCCeEEeccc
Confidence 47777777788888888888 6888888775 588888874 334599999975
No 207
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=55.86 E-value=92 Score=27.63 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=46.0
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEE---------------EEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccc
Q 013729 274 IIMGSDSDLPVMKDAAKILTMFSVPHE---------------VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL 338 (437)
Q Consensus 274 ii~gs~sD~~~~~~~~~~L~~~G~~~~---------------~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l 338 (437)
++.|..+....++.....|..+|.++. +-++|..|...++.+.++.++++|++++....-..+.|
T Consensus 37 ~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 37 FVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred EEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 445544445555555555555555432 33456667777788888888999988665443222232
Q ss_pred cCcccCCCCCCEEeccCCC
Q 013729 339 PGMVAARTPLPVIGVPVRA 357 (437)
Q Consensus 339 ~~~i~~~~~~pVi~~p~~~ 357 (437)
.. ....++-+|...
T Consensus 117 a~-----~ad~~l~~~~~~ 130 (179)
T cd05005 117 AK-----LADVVVVIPAAT 130 (179)
T ss_pred HH-----hCCEEEEeCCcc
Confidence 22 244567777643
No 208
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=54.69 E-value=98 Score=29.91 Aligned_cols=61 Identities=5% Similarity=0.045 Sum_probs=39.3
Q ss_pred CCeEEEEEccCC---CHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEe
Q 013729 269 LPRIGIIMGSDS---DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 269 ~~~V~ii~gs~s---D~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
...|+++....+ .......+.+.+.+.|+.+.+. .....+++..++++.+..++++-+|+.
T Consensus 56 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdGiI~~ 119 (327)
T PRK10423 56 TRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLC--NTEGDEQRMNRNLETLMQKRVDGLLLL 119 (327)
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEEEEE--eCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 356777765322 2344555667888899776543 345667777777777777888866554
No 209
>PRK12757 cell division protein FtsN; Provisional
Probab=54.49 E-value=82 Score=30.14 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=41.5
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE--------EecCCCChhHHHHhHhhhhhcCCe-EEEEeccc
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR--------IVSAHRTPDLMFSYASSAHERGIE-IIIAGAGG 334 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~--------v~s~hr~p~~~~~~~~~~~~~g~~-v~i~~ag~ 334 (437)
...|=.|+.++...++.+.+.|...|++..++ .++...+.+...++...++..|+. ++++..||
T Consensus 184 ~~~VQVGAF~~~~nAe~L~arL~~~G~~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk~~G~~~~iiva~gg 256 (256)
T PRK12757 184 RWMVQCGSFKGTEQAESVRAQLAFAGIESRITTGGGWNRVVLGPYNSKAAADKMLQRLKGAGHSGCIPLAAGG 256 (256)
T ss_pred cEEEEEeeCCCHHHHHHHHHHHHhcCCceEEeecCCEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEEeccCC
Confidence 34345777777777777777777777652211 145566677777777777777774 66666553
No 210
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=53.79 E-value=1.7e+02 Score=30.64 Aligned_cols=36 Identities=17% Similarity=0.071 Sum_probs=28.5
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS 305 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s 305 (437)
.+|.|++|.-.+=....-+++.|...|+++.+-..+
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~ 95 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPK 95 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEEC
Confidence 467788888888888888888888888887766544
No 211
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=53.09 E-value=1.3e+02 Score=28.73 Aligned_cols=106 Identities=18% Similarity=0.263 Sum_probs=58.4
Q ss_pred eEEEEEccCCCH---HHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec-ccc-ccccCcccCC
Q 013729 271 RIGIIMGSDSDL---PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA-GGA-AHLPGMVAAR 345 (437)
Q Consensus 271 ~V~ii~gs~sD~---~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a-g~~-~~l~~~i~~~ 345 (437)
.+++|....++- ..+..+.+.+++.|+.+-+. ....+++.- ++++.+.++.++=+|... ... .++......
T Consensus 3 ~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l~--~t~~~~~~e-~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~- 78 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAEIIRGIEQEAREHGYQLLLC--NTGDDEEKE-EYIELLLQRRVDGIILASSENDDEELRRLIKS- 78 (279)
T ss_dssp EEEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEEE--EETTTHHHH-HHHHHHHHTTSSEEEEESSSCTCHHHHHHHHT-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEEe--cCCCchHHH-HHHHHHHhcCCCEEEEecccCChHHHHHHHHc-
Confidence 466666555542 33444456777888875443 346666655 888888888888444432 222 344444433
Q ss_pred CCCCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHH
Q 013729 346 TPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRML 397 (437)
Q Consensus 346 ~~~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l 397 (437)
..|||-+=.... + +.++|++.++ -..|+..|.+-|
T Consensus 79 -~iPvV~~~~~~~---~----------~~~~~~V~~D---~~~a~~~a~~~L 113 (279)
T PF00532_consen 79 -GIPVVLIDRYID---N----------PEGVPSVYID---NYEAGYEATEYL 113 (279)
T ss_dssp -TSEEEEESS-SC---T----------TCTSCEEEEE---HHHHHHHHHHHH
T ss_pred -CCCEEEEEeccC---C----------cccCCEEEEc---chHHHHHHHHHH
Confidence 567776522111 0 2356666554 445666666654
No 212
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=52.33 E-value=48 Score=27.47 Aligned_cols=57 Identities=9% Similarity=0.074 Sum_probs=38.9
Q ss_pred CeEEEEEcc--CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGS--DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs--~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
..|.|+..+ +.....+.+++..|+..|+.++... . ++ +.+-++.++..|++..+.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~--~-~s---l~kqlk~A~k~g~~~~iiiG 85 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDD--S-GS---IGRRYARQDEIGTPFCVTVD 85 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeC--C-CC---HHHHHHHhHhcCCCEEEEEC
Confidence 455555555 4456778888999999999988873 1 44 45555566788999555543
No 213
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=52.23 E-value=96 Score=25.45 Aligned_cols=54 Identities=30% Similarity=0.353 Sum_probs=35.9
Q ss_pred EEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC
Q 013729 300 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 356 (437)
Q Consensus 300 ~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~ 356 (437)
-+-++|-.|...++.+.++.++++|++++..... ..|..+. .....++|-+|..
T Consensus 46 l~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~--~~l~~~~-~~~~~~~~~~p~~ 99 (119)
T cd05017 46 LVIAVSYSGNTEETLSAVEQAKERGAKIVAITSG--GKLLEMA-REHGVPVIIIPKG 99 (119)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCC--chHHHHH-HHcCCcEEECCCC
Confidence 3444677777777888888888889886654432 2455543 3336788888875
No 214
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=51.38 E-value=2.5e+02 Score=27.58 Aligned_cols=136 Identities=11% Similarity=0.167 Sum_probs=78.0
Q ss_pred HHHHHHHHhhCCcEEEEecCCC-----C-CCcCeEEeCCHHHHHHHHHH--------------hcC-------CCCcEEE
Q 013729 7 ESARRAGKQFGYPLMVKSKRLA-----Y-DGRGNAVAKSEEELSSAITA--------------LGG-------FDRGLYV 59 (437)
Q Consensus 7 ~e~~~~a~~~gyPvvvKP~~~g-----~-gg~Gv~~v~~~~el~~~~~~--------------~~~-------~~~~~lv 59 (437)
+++.++++++|--|+.|=...+ . ...+...|++..|+--.+.. ..+ .+-.+++
T Consensus 75 ~~I~~aI~~lgg~VfpKlNwsaPkDa~wi~~~~sl~c~~~~dv~lLLksSd~i~~DL~~~~~~~~~~~~~~~~~~~~LvL 154 (299)
T PF07065_consen 75 QEIREAIEELGGSVFPKLNWSAPKDAAWINPNNSLKCTSPSDVYLLLKSSDRIAHDLDHAFDECEDEDSPDESIPYELVL 154 (299)
T ss_pred HHHHHHHHHcCCeEEEecCcCCccccchhccCCCceeCCHHHHHHHHHhChHHHHHHHhhhhhcccccCCCCCCceEEEE
Confidence 4577788899988999964321 0 11233578888776654432 111 1235677
Q ss_pred eeccCC--CeEEEEEEEEcCCCceEEeeeeeeEEecCceEEEEeCC--CCCHHHHHHHHHHH-HHHHHHcCCceEEEEEE
Q 013729 60 EKWAPF--VKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPA--AVPWKISELATDVA-HKAVSSLEGAGIFAVEL 134 (437)
Q Consensus 60 Ee~I~g--~~E~sv~~~~d~~G~~~~~~~~e~~~~~g~~~~~~~P~--~l~~~~~~~i~~~a-~~i~~alg~~G~~~ve~ 134 (437)
-+|..- ..|+.+.+. +++++...-. .- .+.+. ...+++++.|.+.. ..+...+... -+-+|+
T Consensus 155 rkw~~l~p~~EFRcFV~---~~~LiaISQr-----~~----~~~~~L~~~~~~I~~~I~~F~~~~I~~~~~~~-~~v~DV 221 (299)
T PF07065_consen 155 RKWVNLNPSMEFRCFVR---NRKLIAISQR-----DL----NYYDFLEELKEEIRSKIQEFFEEHIKPKFPLD-NYVFDV 221 (299)
T ss_pred eccccCCccceEEEEEE---CCEEEEEecc-----cc----cccHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CEEEEE
Confidence 888764 356666553 4555433211 10 11221 13345555555555 3344555443 356898
Q ss_pred EEeCC-CcEEEEEEcCCCCCCC
Q 013729 135 FWTNN-GQILLNEVAPRPHNSG 155 (437)
Q Consensus 135 ~~~~d-g~~~viEiNpR~~~sg 155 (437)
.++++ ++++++|+||-...|+
T Consensus 222 yi~~~~~~v~LID~NPf~~~Td 243 (299)
T PF07065_consen 222 YITRDKDKVWLIDFNPFGPRTD 243 (299)
T ss_pred EEcCCCCeEEEEEecCCcccCc
Confidence 99887 8899999999876543
No 215
>PRK06455 riboflavin synthase; Provisional
Probab=50.99 E-value=1.5e+02 Score=26.08 Aligned_cols=95 Identities=15% Similarity=0.093 Sum_probs=53.3
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcC--CcE-EEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFS--VPH-EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 347 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G--~~~-~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 347 (437)
+++|+...-++..-+..+.+.|+++| .++ ..+|-++.=.|-...+++ +..+++.+|+.. ++
T Consensus 3 kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~---~~~~yDaVIaLG--------~V----- 66 (155)
T PRK06455 3 KIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLI---EEEGCDIVMALG--------MP----- 66 (155)
T ss_pred EEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHH---hcCCCCEEEEec--------ce-----
Confidence 46677655555555677789999976 444 345555555555444454 345677777642 01
Q ss_pred CCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC
Q 013729 348 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN 384 (437)
Q Consensus 348 ~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~ 384 (437)
+.++...---+....=+..+|+-.|+|+..|.+-
T Consensus 67 ---G~t~h~d~Va~~vS~GL~~lsL~t~~PVi~v~vh 100 (155)
T PRK06455 67 ---GPTEKDKYCAHEASIGLIMAQLMTNKHIIEVFVH 100 (155)
T ss_pred ---eccCcchhHHHHHHHHHHHHHhhhCCCEEEEEec
Confidence 2222210000011111678999999999966654
No 216
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=50.52 E-value=47 Score=33.23 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=38.2
Q ss_pred ccCCHHHHHHHHHhhCC-cEEEEecCCCCCCc-----------CeEEeCCHHHHHHHHHHh
Q 013729 2 EVNDLESARRAGKQFGY-PLMVKSKRLAYDGR-----------GNAVAKSEEELSSAITAL 50 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gy-PvvvKP~~~g~gg~-----------Gv~~v~~~~el~~~~~~~ 50 (437)
.+.|+||+.++++++|- -+|||.-... ||| ||.+|.+++|.++.-...
T Consensus 46 vA~speEA~~~akklg~kdlVikAQ~lA-gGRgKGtF~SglkgGV~iVf~p~Eak~va~qm 105 (434)
T KOG2799|consen 46 VAKSPEEAFAIAKKLGSKDLVIKAQVLA-GGRGKGTFDSGLKGGVKIVFSPQEAKAVASQM 105 (434)
T ss_pred ccCCHHHHHHHHHHhCCcceEEEeeecc-cCcccCCcCcCcCCceEEEeChHHHHHHHHHh
Confidence 57899999999999973 6999996543 343 689999999988776654
No 217
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=50.16 E-value=37 Score=32.87 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCcE---EEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 283 PVMKDAAKILTMFSVPH---EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 283 ~~~~~~~~~L~~~G~~~---~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+..+...+.|++.|+.. +..+.+++++++++.++++++.....+++++..
T Consensus 15 ~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~g 67 (294)
T PF04392_consen 15 DIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIG 67 (294)
T ss_dssp HHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEES
T ss_pred HHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeC
Confidence 34444556777777764 555667777777777777777776677666654
No 218
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=50.04 E-value=51 Score=32.95 Aligned_cols=64 Identities=28% Similarity=0.412 Sum_probs=39.6
Q ss_pred hHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC--CCCCCChhhHHHhhhCCCCCc-eEEEEeCCcc
Q 013729 311 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNAT 387 (437)
Q Consensus 311 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~--~~~~~g~~~l~~~~~~~~gvp-~~tv~~~~~~ 387 (437)
+++.+.+.++++.|- .|.|.+ ..-+.|+|.. +..++.+++.|+.+-|. || |=-|.|+.++
T Consensus 184 ~~m~~~I~~ak~~gD-----------SlGG~v----e~~~~gvP~GLG~p~f~klda~la~a~~s--IpAvKgve~G~Gf 246 (344)
T cd07304 184 EKMKELIDEAKKEGD-----------SVGGVV----EVVATGVPAGLGSPVFDKLDARLAQALMS--IPAVKGVEIGSGF 246 (344)
T ss_pred HHHHHHHHHHHHcCC-----------CCceEE----EEEEECCCCCCCccccccchHHHHHHhcC--cCceeEEEECcch
Confidence 445566666665442 333333 4456677774 34468889888877773 44 4488888877
Q ss_pred hHHH
Q 013729 388 NAGL 391 (437)
Q Consensus 388 ~aa~ 391 (437)
.+|-
T Consensus 247 ~~a~ 250 (344)
T cd07304 247 EAAR 250 (344)
T ss_pred hhhh
Confidence 7654
No 219
>PRK13761 hypothetical protein; Provisional
Probab=48.92 E-value=82 Score=29.52 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcc--------cCCCCCCEEeccCC
Q 013729 285 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV--------AARTPLPVIGVPVR 356 (437)
Q Consensus 285 ~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i--------~~~~~~pVi~~p~~ 356 (437)
..++.+.-+..|-++++.. .|||+++..++.+.+++.|++.+.... -...+|++- .|.-..=|+=||..
T Consensus 83 p~eiveLa~~~~A~iEVNL--F~RT~eR~~~I~~~l~~~Ga~~vlG~~-~~~~ip~L~~~R~~v~~~GIy~ADVVLVPLE 159 (248)
T PRK13761 83 PEEIVELAEALNAKLEVNL--FYRTEERVEKIAEVLREHGAKEVLGTD-EDARIPGLDHERAKVSEDGIYSADVVLVPLE 159 (248)
T ss_pred hHHHHHHHHHhCCCEEEEe--ccCCHHHHHHHHHHHHHcCCceeeCCC-CcCcCCCCCCccceECcccceeccEEEecCC
Confidence 4556666678999999886 499999999999999999998554432 134444442 23345567888874
No 220
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=48.54 E-value=73 Score=23.89 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=37.1
Q ss_pred EEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 272 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 272 V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
|.|+..++.+...+.+++..|+..|+.++....+ +.+ .+..+.++..|++.++...
T Consensus 4 v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~---~~~~~~a~~~~~~~~i~i~ 59 (91)
T cd00859 4 VYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKL---KKQFKYADRSGARFAVILG 59 (91)
T ss_pred EEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCH---HHHHHHHHHcCCCEEEEEc
Confidence 4456556666778888899999999988876422 333 3444445777888555543
No 221
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=48.52 E-value=80 Score=27.92 Aligned_cols=58 Identities=16% Similarity=0.040 Sum_probs=33.5
Q ss_pred CCeEEEEEccCCCHH----HHHHHHHHHHHcCCc---E-EEEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 269 LPRIGIIMGSDSDLP----VMKDAAKILTMFSVP---H-EVRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~----~~~~~~~~L~~~G~~---~-~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
..+++||.+ ..+.. -++.+.+.|++.|++ + ..+|-++.=.|-...++++ ...++.+|+
T Consensus 10 ~~riaIV~s-rfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~---~~~yDaiIa 75 (158)
T PRK12419 10 PQRIAFIQA-RWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAK---TGRYAAIVA 75 (158)
T ss_pred CCEEEEEEe-cCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh---cCCCCEEEE
Confidence 347877764 33433 344556788999975 2 3456666666654444542 233676665
No 222
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=46.58 E-value=1.1e+02 Score=28.84 Aligned_cols=88 Identities=11% Similarity=0.071 Sum_probs=57.3
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcc-----cccCC---CC-eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSD-----CQFKI---LP-RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT 309 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~-----~~~~~---~~-~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~ 309 (437)
+-..+.|.++....+.........+ ||.+. .+ .-.+ -.|.+.+.++.+.+++.+.|+.+.+ .++-+
T Consensus 72 vnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~L----l~dp~~l~~iv~av~~~~~PVsvKi-R~~~~ 146 (231)
T TIGR00736 72 VNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQEL----LKNKELLKEFLTKMKELNKPIFVKI-RGNCI 146 (231)
T ss_pred EEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhh----cCCHHHHHHHHHHHHcCCCcEEEEe-CCCCC
Confidence 4456779998888888776543332 33211 01 1111 2478889999988888888988775 34444
Q ss_pred hhHHHHhHhhhhhcCCeEEEEe
Q 013729 310 PDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 310 p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
.+.+.++.+.+++.|+.-+.+-
T Consensus 147 ~~~~~~~a~~l~~aGad~i~Vd 168 (231)
T TIGR00736 147 PLDELIDALNLVDDGFDGIHVD 168 (231)
T ss_pred cchHHHHHHHHHHcCCCEEEEe
Confidence 4567788888889999966553
No 223
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=45.97 E-value=90 Score=29.54 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=17.4
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEE
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHE 300 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~ 300 (437)
.++++++ +...+.-+...+.|.+.||++.
T Consensus 121 ~RIalvT--PY~~~v~~~~~~~l~~~G~eV~ 149 (239)
T TIGR02990 121 RRISLLT--PYTPETSRPMAQYFAVRGFEIV 149 (239)
T ss_pred CEEEEEC--CCcHHHHHHHHHHHHhCCcEEe
Confidence 4565654 4445555566667777777753
No 224
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.77 E-value=13 Score=38.22 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=27.8
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHH
Q 013729 7 ESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSS 45 (437)
Q Consensus 7 ~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~ 45 (437)
.++-+..+.+.-|+++|| ++|+.|.|+..+++..+..+
T Consensus 216 ~df~a~~~~~Krtfivkp-Dsgaqg~giylisDir~~g~ 253 (565)
T KOG2158|consen 216 CDFPASTEIMKRTFIVKP-DSGAQGSGIYLISDIREKGE 253 (565)
T ss_pred HHHHHHHHHhcccEEECC-CCCCCCcceeeechhhhhhH
Confidence 344555666677999999 55679999999977655444
No 225
>PRK10426 alpha-glucosidase; Provisional
Probab=45.26 E-value=1.4e+02 Score=32.73 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=59.5
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec------------
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS------------ 305 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s------------ 305 (437)
..+..|+|..+++++.....+.-+.+ |...-. ++..|-.+..+.++++++.+++.|+|+++-++.
T Consensus 179 ~y~~~G~~~~~vi~~yt~ltGr~p~~-P~Wal~--G~~~g~~~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~ 255 (635)
T PRK10426 179 LRFECADTYISLLEKLTALFGRQPEL-PDWAYD--GVTLGIQGGTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGK 255 (635)
T ss_pred EEEEeCCCHHHHHHHHHHhhCCCCCC-Chhhcc--CccccccCCHHHHHHHHHHHHHcCCCeeEEEEecccccccccccc
Confidence 34667999999999999988875432 111110 223333344577899999999999999875442
Q ss_pred ---------CCCChhHHHHhHhhhhhcCCeEEEEe
Q 013729 306 ---------AHRTPDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 306 ---------~hr~p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
..|-|+ ..++++++++.|+++..-+
T Consensus 256 ~~~~~~~~d~~~FPd-p~~mi~~L~~~G~k~v~~i 289 (635)
T PRK10426 256 RLMWNWKWDSERYPQ-LDSRIKQLNEEGIQFLGYI 289 (635)
T ss_pred cccccceEChhhCCC-HHHHHHHHHHCCCEEEEEE
Confidence 112233 4567778889999966543
No 226
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=44.91 E-value=2e+02 Score=28.41 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=41.6
Q ss_pred CCCeEEEEEccCC-------CHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccccc
Q 013729 268 ILPRIGIIMGSDS-------DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAH 337 (437)
Q Consensus 268 ~~~~V~ii~gs~s-------D~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~ 337 (437)
+.++|++++.++. |+ ...-+...|+++|+.+.....-.|. ++.+.+.+.++.++|.+++|...|.+..
T Consensus 158 r~~rv~II~TG~Ev~~G~i~D~-~~~~l~~~L~~~G~~v~~~~iv~Dd-~~~I~~ai~~~~~~g~DlIItTGGtsvg 232 (312)
T cd03522 158 RPLRVGLIVTGSEVYGGRIEDK-FGPVLRARLAALGVELVEQVIVPHD-EAAIAAAIAEALEAGAELLILTGGASVD 232 (312)
T ss_pred CCCEEEEEEcCCcCCCCcEEEh-HHHHHHHHHHHCCCEEEEEEEcCCC-HHHHHHHHHHHhcCCCCEEEEeCCcccC
Confidence 4567888864431 22 1234456789999986544333333 5666676766666678988887765543
No 227
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=44.08 E-value=3.2e+02 Score=29.12 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=59.2
Q ss_pred ceeEEEE-EEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC--h
Q 013729 234 RKMGHIT-IVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT--P 310 (437)
Q Consensus 234 ~~~G~Vi-~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~--p 310 (437)
.++-.++ -...|.. +.++..++...- .++.+.|+ ..+..+..+++.|.+.|+++..- |+. -
T Consensus 490 ~rveQ~v~m~~ed~k--~kkL~eil~~~~------~ppiIIFv----N~kk~~d~lAk~LeK~g~~~~tl----Hg~k~q 553 (673)
T KOG0333|consen 490 PRVEQKVEMVSEDEK--RKKLIEILESNF------DPPIIIFV----NTKKGADALAKILEKAGYKVTTL----HGGKSQ 553 (673)
T ss_pred cchheEEEEecchHH--HHHHHHHHHhCC------CCCEEEEE----echhhHHHHHHHHhhccceEEEe----eCCccH
Confidence 4443333 3444433 777777776431 33444343 45788999999999999886655 554 2
Q ss_pred hHHHHhHhhhhhcCCeEEEE--eccccccccCcccCCCCCCEEeccC
Q 013729 311 DLMFSYASSAHERGIEIIIA--GAGGAAHLPGMVAARTPLPVIGVPV 355 (437)
Q Consensus 311 ~~~~~~~~~~~~~g~~v~i~--~ag~~~~l~~~i~~~~~~pVi~~p~ 355 (437)
+.-+..+..+++.-.+|+|| +||+-=.+|+| -.|||--.
T Consensus 554 eQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnV------SlVinydm 594 (673)
T KOG0333|consen 554 EQRENALADFREGTGDILVATDVAGRGIDIPNV------SLVINYDM 594 (673)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccccCCCCCcc------ceeeecch
Confidence 32333455666655568887 55544455554 26777543
No 228
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=44.05 E-value=42 Score=26.82 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=25.3
Q ss_pred CeEEEEEccC---CCHHHHHHHHHHHHHcCCcEEEEEe
Q 013729 270 PRIGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIV 304 (437)
Q Consensus 270 ~~V~ii~gs~---sD~~~~~~~~~~L~~~G~~~~~~v~ 304 (437)
..|.+.|-++ +.-+.+..+.+.|+++|++|+..-+
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di 49 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNV 49 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEEC
Confidence 4554665443 4568888999999999999875533
No 229
>PRK05575 cbiC precorrin-8X methylmutase; Validated
Probab=43.74 E-value=1.7e+02 Score=26.99 Aligned_cols=86 Identities=23% Similarity=0.322 Sum_probs=42.6
Q ss_pred HHHHHHcCCcEEEEEecCC--------CChhHHHHhHhhhhhcCCeEEEEeccccc----cccCcccCC--CCCCEEecc
Q 013729 289 AKILTMFSVPHEVRIVSAH--------RTPDLMFSYASSAHERGIEIIIAGAGGAA----HLPGMVAAR--TPLPVIGVP 354 (437)
Q Consensus 289 ~~~L~~~G~~~~~~v~s~h--------r~p~~~~~~~~~~~~~g~~v~i~~ag~~~----~l~~~i~~~--~~~pVi~~p 354 (437)
...|..+|.++.+.+.... +.+.....+ +.+.++|-.+++. |.++ .|..++... .+..|||+|
T Consensus 84 ~~~l~~~g~~v~c~i~~~~v~e~A~~~g~TRs~aam-~~a~~~~~~IvvI--GNAPTAL~~l~~li~~g~~~PalVIG~P 160 (204)
T PRK05575 84 KKALKKLNSTVQCYVSREEVAKIAKERGITRSMAAV-EKAAEEGVEFFVF--GNAPTALYKLKELIKEGKANPKFIIAVP 160 (204)
T ss_pred hhhHhhcCCcEEEECCCcchhHHHhhcCCcHHHHHH-HHHHHcCCcEEEE--eCcHHHHHHHHHHHHcCCCCCCEEEEeC
Confidence 4567778888777653211 111111112 1222234444433 2332 455555433 478899999
Q ss_pred CCCC-CCCChhhHHHhhhCCCCCceEEEE
Q 013729 355 VRAS-ALDGLDSLLSIVQMPRGVPVATVA 382 (437)
Q Consensus 355 ~~~~-~~~g~~~l~~~~~~~~gvp~~tv~ 382 (437)
++.- ...--+.| +..++|++|+.
T Consensus 161 VGFV~A~ESKe~L-----~~~~vP~It~~ 184 (204)
T PRK05575 161 VGFVGAAESKEEL-----EKLDIPYITVR 184 (204)
T ss_pred CccccHHHHHHHH-----HhCCCCEEEEe
Confidence 9732 11111222 24589999765
No 230
>PRK14686 hypothetical protein; Provisional
Probab=43.69 E-value=81 Score=26.37 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCCc--------eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 111 ELATDVAHKAVSSLEGA--------GIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 111 ~~i~~~a~~i~~alg~~--------G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
..-++.|.+.++..||+ +...+|++..+++.+.|+||-.|.+.
T Consensus 9 ~~gE~~A~~~L~~~Gy~il~rN~r~~~GEIDlIa~~~~~lvFVEVKtR~~~ 59 (119)
T PRK14686 9 KEGEDLAVEFLIKKGYTILERNYRFQKAEIDIIAQKGNILVIVEVKTRSSS 59 (119)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCCCCcEEEEECcCCEEEEEEEEecCCC
Confidence 34567777777777653 34669999877788999999999874
No 231
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=43.67 E-value=1.1e+02 Score=25.07 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 301 VRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 301 ~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
+-++|..|...++.+.++.++++|++++..
T Consensus 57 vi~is~sg~~~~~~~~~~~ak~~g~~vi~i 86 (131)
T PF01380_consen 57 VIIISYSGETRELIELLRFAKERGAPVILI 86 (131)
T ss_dssp EEEEESSSTTHHHHHHHHHHHHTTSEEEEE
T ss_pred eEeeeccccchhhhhhhHHHHhcCCeEEEE
Confidence 444556666677777777777777776433
No 232
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=43.50 E-value=3.1e+02 Score=26.43 Aligned_cols=85 Identities=21% Similarity=0.222 Sum_probs=51.9
Q ss_pred eEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHH-cCCcEEEEEecCCCChhHHH
Q 013729 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVSAHRTPDLMF 314 (437)
Q Consensus 236 ~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~-~G~~~~~~v~s~hr~p~~~~ 314 (437)
..+++.+|.|-.=-.+-+++.++ +...+ ++. ..+.+.+.++++.|+. .|+.+++..+..-. |+...
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~---------~g~~l-iLv--aR~~~kL~~la~~l~~~~~v~v~vi~~DLs~-~~~~~ 72 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLAR---------RGYNL-ILV--ARREDKLEALAKELEDKTGVEVEVIPADLSD-PEALE 72 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHH---------CCCEE-EEE--eCcHHHHHHHHHHHHHhhCceEEEEECcCCC-hhHHH
Confidence 35677777776655555555443 22344 333 3567888888888865 66776665554333 55566
Q ss_pred HhHhhhhhc--CCeEEEEecc
Q 013729 315 SYASSAHER--GIEIIIAGAG 333 (437)
Q Consensus 315 ~~~~~~~~~--g~~v~i~~ag 333 (437)
+...+.+.+ .++++|-+||
T Consensus 73 ~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 73 RLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred HHHHHHHhcCCcccEEEECCC
Confidence 666555665 5667777774
No 233
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=43.33 E-value=2.7e+02 Score=25.71 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=51.6
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcE-EEE-------------------EecCCCChhHHHHhHhhhhhcCCeEE
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPH-EVR-------------------IVSAHRTPDLMFSYASSAHERGIEII 328 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~-~~~-------------------v~s~hr~p~~~~~~~~~~~~~g~~v~ 328 (437)
.++| ||+|.-..--..++.+-.|..+|++. .++ .+|--+..+++...+..+++.|++++
T Consensus 39 ~gkv-~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~li 117 (202)
T COG0794 39 KGKV-FVTGVGKSGLIGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLI 117 (202)
T ss_pred CCcE-EEEcCChhHHHHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEE
Confidence 4677 88887766777888888899999883 333 24445556667777777777777755
Q ss_pred EEeccccccccCcccCCCCCCEEeccCC
Q 013729 329 IAGAGGAAHLPGMVAARTPLPVIGVPVR 356 (437)
Q Consensus 329 i~~ag~~~~l~~~i~~~~~~pVi~~p~~ 356 (437)
-+-.--...| ++-.+-|+.+|..
T Consensus 118 aiT~~~~SsL-----ak~aDvvl~ip~~ 140 (202)
T COG0794 118 AITSNPDSSL-----AKAADVVLVIPVK 140 (202)
T ss_pred EEeCCCCChH-----HHhcCeEEEccCc
Confidence 4432111112 2334567777764
No 234
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=43.08 E-value=1.4e+02 Score=28.42 Aligned_cols=40 Identities=13% Similarity=-0.009 Sum_probs=26.5
Q ss_pred EEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccccccc
Q 013729 300 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLP 339 (437)
Q Consensus 300 ~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~ 339 (437)
.+-++|-.|..+++.+.++.++++|++++.......+.+.
T Consensus 178 v~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la 217 (278)
T PRK11557 178 LLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQ 217 (278)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchH
Confidence 3445566777777888888889999987765543333333
No 235
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=42.87 E-value=55 Score=32.30 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCC-cEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEec
Q 013729 283 PVMKDAAKILTMFSV-PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 353 (437)
Q Consensus 283 ~~~~~~~~~L~~~G~-~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~ 353 (437)
....-+.+.|+++|+ +++..+-++|+++...+.+.+++..++-+|+++.++-++ -.+++.-+..||+=.
T Consensus 46 ~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~A--q~~~s~~~~iPVV~a 115 (322)
T COG2984 46 AAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAA--QALVSATKTIPVVFA 115 (322)
T ss_pred HHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHHH--HHHHHhcCCCCEEEE
Confidence 334455688899999 667777789999998888888888888878887764222 123333344788843
No 236
>PRK12361 hypothetical protein; Provisional
Probab=42.71 E-value=1.5e+02 Score=31.72 Aligned_cols=110 Identities=16% Similarity=0.241 Sum_probs=58.4
Q ss_pred cCCHHHHHHHHHHhhccCCcc-------------cccCCCCeEEEEE----ccCCCHHHHHHHHHHHHHcCCcEEEEEec
Q 013729 243 GSSMGLVESRLNSLLKEDSSD-------------CQFKILPRIGIIM----GSDSDLPVMKDAAKILTMFSVPHEVRIVS 305 (437)
Q Consensus 243 G~s~~eA~~k~~~a~~~i~~~-------------~~~~~~~~V~ii~----gs~sD~~~~~~~~~~L~~~G~~~~~~v~s 305 (437)
+.|.+||++.+++....+..- .......++.+|. |+.......+++.+.|++. +++++....
T Consensus 203 ~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~~~~~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~-~~~~v~~t~ 281 (547)
T PRK12361 203 DLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGKLNIHKRAWLIANPVSGGGKWQEYGEQIQRELKAY-FDLTVKLTT 281 (547)
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcccCCceEEEECCCCCCCcHHHHHHHHHHHHhcC-CceEEEECC
Confidence 567888888776654332110 0111123444443 3333446677777777774 666655444
Q ss_pred CCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCC--CCCCEEeccCCC
Q 013729 306 AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR--TPLPVIGVPVRA 357 (437)
Q Consensus 306 ~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~--~~~pVi~~p~~~ 357 (437)
..++ ..++.+++.+.+.+++|+ .||.+-+-.++.+. +..|+--+|.++
T Consensus 282 ~~~~---a~~la~~~~~~~~d~Viv-~GGDGTl~ev~~~l~~~~~~lgiiP~GT 331 (547)
T PRK12361 282 PEIS---AEALAKQARKAGADIVIA-CGGDGTVTEVASELVNTDITLGIIPLGT 331 (547)
T ss_pred CCcc---HHHHHHHHHhcCCCEEEE-ECCCcHHHHHHHHHhcCCCCEEEecCCc
Confidence 3333 455555555667777665 46666665555443 333433456653
No 237
>PRK10927 essential cell division protein FtsN; Provisional
Probab=41.83 E-value=1.4e+02 Score=29.51 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=44.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE--------EecCCCChhHHHHhHhhhhhcCCe-EEEEecc
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR--------IVSAHRTPDLMFSYASSAHERGIE-IIIAGAG 333 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~--------v~s~hr~p~~~~~~~~~~~~~g~~-v~i~~ag 333 (437)
+...|=.||.++...++.+...|...||+-.++ +++..-+.+++.+.+..++..|+. |++..+|
T Consensus 246 ~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~aGis~ci~~a~g 318 (319)
T PRK10927 246 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAG 318 (319)
T ss_pred CcEEEEeCccCCHHHHHHHHHHHHHcCCeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCceeeccCC
Confidence 456577888888888888888888888773322 145555667777777777777776 4444443
No 238
>PRK11914 diacylglycerol kinase; Reviewed
Probab=41.52 E-value=98 Score=30.15 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=45.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccC--CCCCCEEeccC
Q 013729 278 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA--RTPLPVIGVPV 355 (437)
Q Consensus 278 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~--~~~~pVi~~p~ 355 (437)
+........++.+.|++.|+++..... .. +....++.+++.+.+.+++|++ ||.+-+-.++.+ ....|+--+|.
T Consensus 21 ~g~~~~~~~~~~~~l~~~g~~~~~~~t--~~-~~~~~~~a~~~~~~~~d~vvv~-GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 21 HGAAPHAAERAIARLHHRGVDVVEIVG--TD-AHDARHLVAAALAKGTDALVVV-GGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEEe--CC-HHHHHHHHHHHHhcCCCEEEEE-CCchHHHHHhHHhccCCCcEEEEeC
Confidence 333455677788889999988765432 22 5567777776666777765544 555443333322 23445444576
Q ss_pred CC
Q 013729 356 RA 357 (437)
Q Consensus 356 ~~ 357 (437)
.+
T Consensus 97 GT 98 (306)
T PRK11914 97 GT 98 (306)
T ss_pred CC
Confidence 53
No 239
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=41.24 E-value=1.2e+02 Score=29.41 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCC------CCCEEecc
Q 013729 281 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAART------PLPVIGVP 354 (437)
Q Consensus 281 D~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~------~~pVi~~p 354 (437)
......++.+.|++.|++++.......++ ..++.+++...+.++++ ++||.+-+-.++.+.. ..|+--+|
T Consensus 12 ~~~~~~~~~~~l~~~g~~~~v~~t~~~~~---a~~~a~~~~~~~~d~vv-~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP 87 (293)
T TIGR03702 12 DNEDVREAVGDLRDEGIQLHVRVTWEKGD---AQRYVAEALALGVSTVI-AGGGDGTLREVATALAQIRDDAAPALGLLP 87 (293)
T ss_pred chhHHHHHHHHHHHCCCeEEEEEecCCCC---HHHHHHHHHHcCCCEEE-EEcCChHHHHHHHHHHhhCCCCCCcEEEEc
Confidence 44566677778999999987664433343 34455554556677655 4466665555554331 22455567
Q ss_pred CCC
Q 013729 355 VRA 357 (437)
Q Consensus 355 ~~~ 357 (437)
..+
T Consensus 88 ~GT 90 (293)
T TIGR03702 88 LGT 90 (293)
T ss_pred CCc
Confidence 753
No 240
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=41.10 E-value=67 Score=29.65 Aligned_cols=82 Identities=17% Similarity=0.083 Sum_probs=52.2
Q ss_pred EcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEcc-----------CCCHHHHHHHHHHHHHcCCcEEEEEecCCCCh
Q 013729 242 VGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGS-----------DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTP 310 (437)
Q Consensus 242 ~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs-----------~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p 310 (437)
.|.+.++-++.+..+...++- ....++|+++||+ |......+.++..++..|+++.=. |-.
T Consensus 113 Eg~ti~dk~ri~~laaeflrr---~~~ep~VaVlSgGRlgDlGR~~~VDrtladgEfva~~~k~~g~~v~H~----~IL- 184 (256)
T COG4002 113 EGKTIKDKIRIIELAAEFLRR---TGIEPKVAVLSGGRLGDLGRNKEVDRTLADGEFVAEHFKGNGVDVIHY----GIL- 184 (256)
T ss_pred CCccHHHHHHHHHHHHHHHHH---hCCCcceEEecCCcchhccCcchhhhhhhchHHHHHHHhccCceeEEe----eeE-
Confidence 456777777777777665542 2356889999985 344566778888888888875322 221
Q ss_pred hHHHHhHhhhhhcCCeEEEEeccccccc
Q 013729 311 DLMFSYASSAHERGIEIIIAGAGGAAHL 338 (437)
Q Consensus 311 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l 338 (437)
..+++ ++| .++|+.-|-..+|
T Consensus 185 --IEeal----kdg-nvIia~dGItGNL 205 (256)
T COG4002 185 --IEEAL----KDG-NVIIAVDGITGNL 205 (256)
T ss_pred --HHHHh----hcC-CEEEEecCccchh
Confidence 34444 345 7888877654443
No 241
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=40.78 E-value=90 Score=29.21 Aligned_cols=19 Identities=21% Similarity=0.078 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHcCCcE
Q 013729 281 DLPVMKDAAKILTMFSVPH 299 (437)
Q Consensus 281 D~~~~~~~~~~L~~~G~~~ 299 (437)
|...+.++++.|++.|.++
T Consensus 163 ~~~~l~~Aa~~L~~~gadl 181 (221)
T PF07302_consen 163 DEEELAAAARELAEQGADL 181 (221)
T ss_pred CHHHHHHHHHHHHhcCCCE
Confidence 6677777777777777764
No 242
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=40.73 E-value=1.9e+02 Score=26.91 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=24.1
Q ss_pred cccCcccC--CCCCCEEeccCCCC-CCCChhhHHHhhhCCCCCceEEEE
Q 013729 337 HLPGMVAA--RTPLPVIGVPVRAS-ALDGLDSLLSIVQMPRGVPVATVA 382 (437)
Q Consensus 337 ~l~~~i~~--~~~~pVi~~p~~~~-~~~g~~~l~~~~~~~~gvp~~tv~ 382 (437)
.|..++.. -.+..|||+|++.- ...--+.| +..|+|++|+.
T Consensus 147 ~l~~li~~g~~~PalVIG~PVGFV~AaEsKe~L-----~~~~iP~It~~ 190 (214)
T PRK08286 147 RLLEMVEHGQLQVDAVVGVPVGFVGAAESKEAL-----TESDLPAIAAL 190 (214)
T ss_pred HHHHHHHcCCCCCcEEEEeCCccccHHHHHHHH-----HhCCCCEEEEe
Confidence 45566643 35788999999631 11111222 24589999765
No 243
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=39.88 E-value=1.6e+02 Score=27.87 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=25.6
Q ss_pred EEEecCCCChhHHHHhHhhhhhcCCeEEEEecccccccc
Q 013729 301 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLP 339 (437)
Q Consensus 301 ~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~ 339 (437)
+-++|..|..+++.+.++.++++|++++.......+.|.
T Consensus 51 ~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~ 89 (268)
T TIGR00393 51 VLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLA 89 (268)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCccc
Confidence 444566777777888888888888886655443333443
No 244
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=39.81 E-value=2.7e+02 Score=27.01 Aligned_cols=103 Identities=19% Similarity=0.207 Sum_probs=60.7
Q ss_pred CCCeEEEEEccCCCH---------HHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecc--ccc
Q 013729 268 ILPRIGIIMGSDSDL---------PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG--GAA 336 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~---------~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag--~~~ 336 (437)
..+.|+++.|+.+-. ..+.-+.+.|++.|+++.++.. .|||+.+...+++- -+....++=... +.|
T Consensus 160 ~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfS--RRTp~~~~s~l~~~-l~s~~~i~w~~~d~g~N 236 (329)
T COG3660 160 PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFS--RRTPDTVKSILKNN-LNSSPGIVWNNEDTGYN 236 (329)
T ss_pred CCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEee--cCCcHHHHHHHHhc-cccCceeEeCCCCCCCC
Confidence 456788888864321 2233445778889999988853 89999999998631 111222222222 445
Q ss_pred cccCcccCCCCCCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEe
Q 013729 337 HLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAI 383 (437)
Q Consensus 337 ~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~ 383 (437)
-.+++++. .+-+|.+- |... +-+.+...|.||.+..-
T Consensus 237 PY~~~La~--Adyii~Ta------DSin--M~sEAasTgkPv~~~~~ 273 (329)
T COG3660 237 PYIDMLAA--ADYIISTA------DSIN--MCSEAASTGKPVFILEP 273 (329)
T ss_pred chHHHHhh--cceEEEec------chhh--hhHHHhccCCCeEEEec
Confidence 55666543 33444432 2222 44556688999998763
No 245
>PRK14674 hypothetical protein; Provisional
Probab=39.73 E-value=90 Score=26.74 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCc--------eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 112 LATDVAHKAVSSLEGA--------GIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 112 ~i~~~a~~i~~alg~~--------G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
.-++.|.+.++.-||+ +...+|++..+++.+.|+||-.|.+.
T Consensus 10 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~LVFVEVK~R~~~ 59 (133)
T PRK14674 10 WAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQG 59 (133)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeecCCCCEeEEEEeCCEEEEEEEEecCCC
Confidence 3456777777777653 34669999877778999999999874
No 246
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=39.43 E-value=99 Score=31.16 Aligned_cols=144 Identities=17% Similarity=0.301 Sum_probs=81.5
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChhHHHHhHhhhhhcCCe---EEEEeccc-cccccCccc
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGIE---IIIAGAGG-AAHLPGMVA 343 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~hr~p~~~~~~~~~~~~~g~~---v~i~~ag~-~~~l~~~i~ 343 (437)
+++|++-..-..-.+.+....|...|+..+.-++. ..++.+.+.+....+-+.++. .+|+..|| -..|.|++|
T Consensus 35 k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~A 114 (360)
T COG0337 35 KVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAA 114 (360)
T ss_pred eEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHH
Confidence 56566533322334577788889999886444332 345555555555555555555 77777666 479999987
Q ss_pred C--CCCCCEEeccCC-----CCCCCChh--------hHHHhhhCCCCCceE-----EEEeCCcchHHHH-HHHHHccCCh
Q 013729 344 A--RTPLPVIGVPVR-----ASALDGLD--------SLLSIVQMPRGVPVA-----TVAINNATNAGLL-AVRMLGFGDA 402 (437)
Q Consensus 344 ~--~~~~pVi~~p~~-----~~~~~g~~--------~l~~~~~~~~gvp~~-----tv~~~~~~~aa~~-a~~~l~~~~~ 402 (437)
+ +--.+.|.+|+. .++.+|-. .++.+.-.|.-|=+- |+. ..-..+++. +++.--+.|+
T Consensus 115 aty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aVi~D~~~L~TLp-~re~~~G~AEvIK~g~I~D~ 193 (360)
T COG0337 115 ATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDTDFLKTLP-PRELRAGMAEVIKYGLIADP 193 (360)
T ss_pred HHHHcCCCeEeccchHHHHhhcccccccccCCCCCcceeecccCCcEEEEchHHhccCC-HHHHHHhHHHHHHHhhhcCH
Confidence 7 466799999986 22222321 122222233322110 111 012334443 3444556899
Q ss_pred HHHHHHHHHHHHh
Q 013729 403 DLRARMQQYMEDM 415 (437)
Q Consensus 403 ~~~~~~~~~~~~~ 415 (437)
++++.|.+.+.+.
T Consensus 194 ~~f~~Le~~~~~l 206 (360)
T COG0337 194 EFFDWLEENLDAL 206 (360)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999874443
No 247
>PRK13054 lipid kinase; Reviewed
Probab=39.32 E-value=95 Score=30.20 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccC
Q 013729 282 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 344 (437)
Q Consensus 282 ~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 344 (437)
.....++.+.|.+.|+++++....- +....++.+++...+.+++++ +||.+-+-.++.+
T Consensus 17 ~~~~~~~~~~l~~~g~~~~v~~t~~---~~~a~~~a~~~~~~~~d~vvv-~GGDGTl~evv~~ 75 (300)
T PRK13054 17 NEELREAVGLLREEGHTLHVRVTWE---KGDAARYVEEALALGVATVIA-GGGDGTINEVATA 75 (300)
T ss_pred hHHHHHHHHHHHHcCCEEEEEEecC---CCcHHHHHHHHHHcCCCEEEE-ECCccHHHHHHHH
Confidence 4567777778999999987754332 233455665555567776554 4666666666544
No 248
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.28 E-value=90 Score=26.24 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeC-CHHHHHHHHHHhcCCC
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAK-SEEELSSAITALGGFD 54 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~-~~~el~~~~~~~~~~~ 54 (437)
..++.++.+.+-.+++|+.||-...| - +++ .++++.+..+++.+.+
T Consensus 16 ~vsp~elv~~l~~~~~PvtiKeTCfG-----a-ii~G~Ed~v~klveriR~~d 62 (142)
T COG4029 16 GVSPKELVQKLLELSPPVTIKETCFG-----A-IIDGPEDEVRKLVERIRELD 62 (142)
T ss_pred CcChHHHHHHHHhcCCCeEeeeeeee-----e-eecCcHHHHHHHHHHHHHhc
Confidence 35788999999999999999997644 2 444 4556666666665443
No 249
>PRK08862 short chain dehydrogenase; Provisional
Probab=39.13 E-value=1.3e+02 Score=27.82 Aligned_cols=84 Identities=10% Similarity=0.086 Sum_probs=44.9
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++.+|.+..=-.+-+.+.++ ....| ++. ..+...++++.+.++..|.+...-.+. -.+++.+.+++
T Consensus 7 ~~lVtGas~GIG~aia~~la~---------~G~~V-~~~--~r~~~~l~~~~~~i~~~~~~~~~~~~D-~~~~~~~~~~~ 73 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFAR---------LGATL-ILC--DQDQSALKDTYEQCSALTDNVYSFQLK-DFSQESIRHLF 73 (227)
T ss_pred EEEEECCccHHHHHHHHHHHH---------CCCEE-EEE--cCCHHHHHHHHHHHHhcCCCeEEEEcc-CCCHHHHHHHH
Confidence 355556555444443333332 22344 333 234566777776677767553322222 34677777776
Q ss_pred hhhhhc---CCeEEEEeccc
Q 013729 318 SSAHER---GIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~~---g~~v~i~~ag~ 334 (437)
++..+. .++++|.++|.
T Consensus 74 ~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 74 DAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHHhCCCCCEEEECCcc
Confidence 654432 47888888763
No 250
>PRK15482 transcriptional regulator MurR; Provisional
Probab=38.99 E-value=1.8e+02 Score=27.87 Aligned_cols=50 Identities=12% Similarity=0.057 Sum_probs=30.4
Q ss_pred EEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC
Q 013729 302 RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 356 (437)
Q Consensus 302 ~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~ 356 (437)
-++|-.|...++.+.++.++++|++++.......+.|.. ...-+|-+|..
T Consensus 187 i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~-----~ad~~l~~~~~ 236 (285)
T PRK15482 187 IAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRR-----LAHFTLDTVSG 236 (285)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHH-----hCCEEEEcCCC
Confidence 334556666668888888889998866554433333332 34456666654
No 251
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=38.88 E-value=2.7e+02 Score=26.77 Aligned_cols=52 Identities=17% Similarity=0.101 Sum_probs=32.7
Q ss_pred EEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCCC
Q 013729 301 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRA 357 (437)
Q Consensus 301 ~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~ 357 (437)
+-++|--|...++.+.++.++++|++++.......+.|.. ....+|-+|...
T Consensus 191 ~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~-----~ad~~l~~~~~~ 242 (292)
T PRK11337 191 VLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAK-----LADYVICSTAQG 242 (292)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH-----hCCEEEEcCCCC
Confidence 3445666666678888888999999877654433333332 244567777643
No 252
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=38.71 E-value=64 Score=31.16 Aligned_cols=76 Identities=22% Similarity=0.430 Sum_probs=43.8
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccC---CCCCCEEe-
Q 013729 277 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA---RTPLPVIG- 352 (437)
Q Consensus 277 gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~---~~~~pVi~- 352 (437)
|+........++.+.|++.|++++......... ...+++.+.+.+.+++++ .||.+-+-.++.+ ....|.++
T Consensus 13 g~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~d~ivv-~GGDGTl~~v~~~l~~~~~~~~lgi 88 (293)
T TIGR00147 13 GKSNDNKPLREVIMLLREEGMEIHVRVTWEKGD---AARYVEEARKFGVDTVIA-GGGDGTINEVVNALIQLDDIPALGI 88 (293)
T ss_pred cchhhHHHHHHHHHHHHHCCCEEEEEEecCccc---HHHHHHHHHhcCCCEEEE-ECCCChHHHHHHHHhcCCCCCcEEE
Confidence 333345667778888999999876643321212 223343334456676554 4677666655543 23457777
Q ss_pred ccCC
Q 013729 353 VPVR 356 (437)
Q Consensus 353 ~p~~ 356 (437)
+|.+
T Consensus 89 iP~G 92 (293)
T TIGR00147 89 LPLG 92 (293)
T ss_pred EcCc
Confidence 7875
No 253
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=37.79 E-value=4e+02 Score=28.57 Aligned_cols=61 Identities=16% Similarity=-0.019 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHhhcc-CCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013729 243 GSSMGLVESRLNSLLKE-DSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 303 (437)
Q Consensus 243 G~s~~eA~~k~~~a~~~-i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v 303 (437)
|-+.++..++|-.++.. +....+.....+|.|++|...+=....-+++.|..+|+++.+-.
T Consensus 108 Gis~~~LME~AG~avA~~I~~~~~~~~~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~ 169 (544)
T PLN02918 108 GFSVDQLMELAGLSVAASIAEVYKPGEYSRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCY 169 (544)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcccccCCEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEE
Confidence 55555566555544432 22111110124788999999999999999999999999977654
No 254
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=37.69 E-value=30 Score=23.56 Aligned_cols=21 Identities=10% Similarity=0.022 Sum_probs=18.7
Q ss_pred EEEEcCCHHHHHHHHHHhhcc
Q 013729 239 ITIVGSSMGLVESRLNSLLKE 259 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~ 259 (437)
++..|+|.+||+++++.++..
T Consensus 24 ~~t~G~t~eea~~~~~eal~~ 44 (48)
T PF03681_consen 24 CFTQGDTLEEALENAKEALEL 44 (48)
T ss_dssp CEEEESSHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHH
Confidence 668999999999999998863
No 255
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=37.60 E-value=3.2e+02 Score=25.23 Aligned_cols=86 Identities=23% Similarity=0.240 Sum_probs=42.3
Q ss_pred HHHHHHcCCcEEEEEec----CCCChhHHHHhHhhhhh-cCCeEEEEeccccc----cccCcccC--CCCCCEEeccCCC
Q 013729 289 AKILTMFSVPHEVRIVS----AHRTPDLMFSYASSAHE-RGIEIIIAGAGGAA----HLPGMVAA--RTPLPVIGVPVRA 357 (437)
Q Consensus 289 ~~~L~~~G~~~~~~v~s----~hr~p~~~~~~~~~~~~-~g~~v~i~~ag~~~----~l~~~i~~--~~~~pVi~~p~~~ 357 (437)
...|..+|.++.+.+.. ..+.+.....+.+-.+. .|. +++. |.++ .|..++.. -.+..|||+|++.
T Consensus 82 ~~~l~~~g~~v~C~i~~~~~~~~g~TRs~aam~~a~~~~~~~-IvvI--GNAPTAL~~l~eli~~g~~~PalVIg~PVGF 158 (203)
T PRK05954 82 TLVNKTFQNPIITAIDQVSIPLPGKTRTETGLLKCAQQYPEA-IYVI--GNAPTALLALCQQIRAGRVKPSLVIGVPVGF 158 (203)
T ss_pred hhhHhhcCCcEEEECCCccccccCCcHHHHHHHHHHHHCCCC-EEEE--eCCHHHHHHHHHHHHcCCCCCCEEEEECCcc
Confidence 34567778887766432 12222222333222222 232 3322 3333 44555543 3577899999963
Q ss_pred C-CCCChhhHHHhhhCCCCCceEEEE
Q 013729 358 S-ALDGLDSLLSIVQMPRGVPVATVA 382 (437)
Q Consensus 358 ~-~~~g~~~l~~~~~~~~gvp~~tv~ 382 (437)
- ...--+.| +..|+|++|+.
T Consensus 159 V~A~ESKe~L-----~~~~iP~It~~ 179 (203)
T PRK05954 159 VSVVEAKQAL-----AQLDVPQIRVE 179 (203)
T ss_pred cCHHHHHHHH-----HhCCCCEEEEe
Confidence 1 11111222 24689999765
No 256
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=37.54 E-value=50 Score=32.15 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=55.6
Q ss_pred CCeEEEEEccCCC-----HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCe-EEEEecc---cccccc
Q 013729 269 LPRIGIIMGSDSD-----LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIE-IIIAGAG---GAAHLP 339 (437)
Q Consensus 269 ~~~V~ii~gs~sD-----~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~-v~i~~ag---~~~~l~ 339 (437)
+.+|++++|+.|. +.-+..+.+.|++.|+++..- ..++ .+ ++.++.+...+ ||.+.-| ..+.++
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~--~~~~-~~----~~~~l~~~~~d~vf~~lhG~~ge~~~i~ 75 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGV--DASG-KE----LVAKLLELKPDKCFVALHGEDGENGRVS 75 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEE--cCCc-hh----HHHHhhccCCCEEEEeCCCCCCCChHHH
Confidence 3478899998776 455777889999999985433 2232 11 12222333455 6666543 334566
Q ss_pred CcccCCCCCCEEeccCCCCCCCChhhHH-HhhhCCCCCceE
Q 013729 340 GMVAARTPLPVIGVPVRASALDGLDSLL-SIVQMPRGVPVA 379 (437)
Q Consensus 340 ~~i~~~~~~pVi~~p~~~~~~~g~~~l~-~~~~~~~gvp~~ 379 (437)
+++. ..-.|++|+.+....+ .+|-.+ ..+-...|||+.
T Consensus 76 ~~le-~~gip~~Gs~~~a~~l-~~DK~~~k~~l~~~gIptp 114 (296)
T PRK14569 76 ALLE-MLEIKHTSSSMKSSVI-TMDKMISKEILMHHRMPTP 114 (296)
T ss_pred HHHH-HcCCCeeCCCHHHHHH-HHCHHHHHHHHHHCCCCCC
Confidence 6653 3457888765432111 222222 223336677776
No 257
>PRK13337 putative lipid kinase; Reviewed
Probab=37.26 E-value=90 Score=30.44 Aligned_cols=71 Identities=24% Similarity=0.302 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCC---CCCCEEec-cCC
Q 013729 282 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR---TPLPVIGV-PVR 356 (437)
Q Consensus 282 ~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~---~~~pVi~~-p~~ 356 (437)
.....++.+.|.+.|++++.......++ ..++.+++.+.+.+++++ .||.+.+-.++.+. ...|.+++ |.+
T Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~t~~~~~---a~~~a~~~~~~~~d~vvv-~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 18 KKNLPDVLQKLEQAGYETSAHATTGPGD---ATLAAERAVERKFDLVIA-AGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCCCC---HHHHHHHHHhcCCCEEEE-EcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 4556677888999999987665554444 444555555667776554 46666665555432 22344544 654
No 258
>PRK05867 short chain dehydrogenase; Provisional
Probab=36.90 E-value=1.6e+02 Score=27.35 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEeccc
Q 013729 281 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 281 D~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
+.+.+++..+.++..|-.+....+. -..++.+.+++++..+ ..++++|-++|.
T Consensus 42 ~~~~~~~~~~~l~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 42 HLDALEKLADEIGTSGGKVVPVCCD-VSQHQQVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEcc-CCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 4455666666666555443322222 2345555555543322 256677766653
No 259
>PRK05382 chorismate synthase; Validated
Probab=36.70 E-value=1.2e+02 Score=30.64 Aligned_cols=63 Identities=29% Similarity=0.362 Sum_probs=38.5
Q ss_pred hHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC--CCCCCChhhHHHhhhCCCCCc-eEEEEeCCcc
Q 013729 311 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNAT 387 (437)
Q Consensus 311 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~--~~~~~g~~~l~~~~~~~~gvp-~~tv~~~~~~ 387 (437)
+++.+.+.++++.|- .|.|++ ..-|.|+|+. +..++.+|+.|+.+-|. || |=-|.|+.++
T Consensus 182 ~~m~~~I~~ak~~gD-----------SlGG~v----e~~~~gvP~GLG~p~f~kLda~la~a~ms--IpAvKgvE~G~Gf 244 (359)
T PRK05382 182 EEMEELIDEAKKEGD-----------SLGGVV----EVVAEGVPAGLGEPVFDKLDADLAHALMS--INAVKGVEIGDGF 244 (359)
T ss_pred HHHHHHHHHHHHcCC-----------CCceEE----EEEEECCCCCCCccccccchHHHHHHhcC--cCceeEEEECcch
Confidence 345555666655442 344433 4456677774 34568899888877773 44 4488888777
Q ss_pred hHH
Q 013729 388 NAG 390 (437)
Q Consensus 388 ~aa 390 (437)
.+|
T Consensus 245 ~~a 247 (359)
T PRK05382 245 AAA 247 (359)
T ss_pred hhc
Confidence 654
No 260
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=36.66 E-value=2.6e+02 Score=24.84 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=45.3
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
|.+..+|.+|+.+.+....+ +|+-...+-+.+.++.+.|+..+..+.+-+++ -=+++...+|.
T Consensus 83 I~VEv~~~ee~~ea~~~g~d---------------~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SG-GI~~~ni~~ya- 145 (169)
T PF01729_consen 83 IEVEVENLEEAEEALEAGAD---------------IIMLDNMSPEDLKEAVEELRELNPRVKIEASG-GITLENIAEYA- 145 (169)
T ss_dssp EEEEESSHHHHHHHHHTT-S---------------EEEEES-CHHHHHHHHHHHHHHTTTSEEEEES-SSSTTTHHHHH-
T ss_pred EEEEcCCHHHHHHHHHhCCC---------------EEEecCcCHHHHHHHHHHHhhcCCcEEEEEEC-CCCHHHHHHHH-
Confidence 66677777777765553322 34444556677888888887777776666544 55666666665
Q ss_pred hhhhcCCeEEEEec
Q 013729 319 SAHERGIEIIIAGA 332 (437)
Q Consensus 319 ~~~~~g~~v~i~~a 332 (437)
+.|++++.+.+
T Consensus 146 ---~~gvD~isvg~ 156 (169)
T PF01729_consen 146 ---KTGVDVISVGS 156 (169)
T ss_dssp ---HTT-SEEEECH
T ss_pred ---hcCCCEEEcCh
Confidence 34777666543
No 261
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=36.56 E-value=5.1e+02 Score=26.93 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=35.2
Q ss_pred CCCCCChhhHHHhhhCCCCCceEEEEeC------CcchHHHHHHHHHccCCh-HHHHHHHHH
Q 013729 357 ASALDGLDSLLSIVQMPRGVPVATVAIN------NATNAGLLAVRMLGFGDA-DLRARMQQY 411 (437)
Q Consensus 357 ~~~~~g~~~l~~~~~~~~gvp~~tv~~~------~~~~aa~~a~~~l~~~~~-~~~~~~~~~ 411 (437)
+...+|.. ||..+.. |.|+-=++.+ ..+..--+|-||||+.|- .|-+|.++.
T Consensus 251 GdaRGGaA--LS~~~~t-g~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~ 309 (451)
T COG0541 251 GDARGGAA--LSARAIT-GKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEV 309 (451)
T ss_pred CCCcchHH--HhhHHHH-CCCeEEEecCCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHh
Confidence 44455555 6666653 6788766665 488999999999999874 344555443
No 262
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=36.53 E-value=1.1e+02 Score=29.08 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=31.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEecCCC-ChhHHHHhHhhhhhcCCeEE
Q 013729 278 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHR-TPDLMFSYASSAHERGIEII 328 (437)
Q Consensus 278 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr-~p~~~~~~~~~~~~~g~~v~ 328 (437)
+.+|...+.++.+..++.|+.+.+.+..+++ +|+.+.++.+.+.+.|++.+
T Consensus 107 ~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i 158 (263)
T cd07943 107 HCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCV 158 (263)
T ss_pred chhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE
Confidence 4455666666667777777766665533443 36666666666666666643
No 263
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=36.52 E-value=2.4e+02 Score=27.15 Aligned_cols=83 Identities=13% Similarity=0.156 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhccCCccc-------ccCCCCeEEEEEccCCC--H-HHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 247 GLVESRLNSLLKEDSSDC-------QFKILPRIGIIMGSDSD--L-PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 247 ~eA~~k~~~a~~~i~~~~-------~~~~~~~V~ii~gs~sD--~-~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
++..++..++++++.... ...+...|+++....++ . .....+.+.+++.|+.+... ..+..++...++
T Consensus 30 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i~--~~~~~~~~~~~~ 107 (329)
T TIGR01481 30 PATRKKVLEVIKRLDYRPNAVARGLASKRTTTVGVIIPDISNIYYAELARGIEDIATMYKYNIILS--NSDEDPEKEVQV 107 (329)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHhhCCCCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEEE--eCCCCHHHHHHH
Confidence 456666666665543320 11133568788754333 1 22334456677788776443 446667766677
Q ss_pred HhhhhhcCCeEEEEe
Q 013729 317 ASSAHERGIEIIIAG 331 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~ 331 (437)
++.+..++++-+|..
T Consensus 108 ~~~l~~~~vdGiIi~ 122 (329)
T TIGR01481 108 LNTLLSKQVDGIIFM 122 (329)
T ss_pred HHHHHhCCCCEEEEe
Confidence 766677788855553
No 264
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=36.43 E-value=4e+02 Score=25.63 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhccCCccc-------ccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 247 GLVESRLNSLLKEDSSDC-------QFKILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 247 ~eA~~k~~~a~~~i~~~~-------~~~~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
++..+|..++++++.... ...+...|+++...-++ ...+..+.+.+++.|+.+... .....+++..++
T Consensus 31 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~--~~~~~~~~~~~~ 108 (327)
T TIGR02417 31 QETVERVMAVVREQGYQPNIHAASLRAGRSRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIA--CSDDNPDQEKVV 108 (327)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEE--eCCCCHHHHHHH
Confidence 456666666655543320 11133567777653222 334455667778888876543 345677777777
Q ss_pred HhhhhhcCCeEEEEec
Q 013729 317 ASSAHERGIEIIIAGA 332 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~a 332 (437)
+..+..++++-+|...
T Consensus 109 ~~~l~~~~vdgiIi~~ 124 (327)
T TIGR02417 109 IENLLARQVDALIVAS 124 (327)
T ss_pred HHHHHHcCCCEEEEeC
Confidence 7777778888666543
No 265
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=36.25 E-value=2.2e+02 Score=27.64 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=39.3
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
..++++....++ ......+.+.++++|+.+... ..+..+++..++++.+..++++.+|+..
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiii~~ 123 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILC--NAWNNLEKQRAYLSMLAQKRVDGLLVMC 123 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEE--eCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 467776643222 223345566777889775544 4567788777888777788888666544
No 266
>PRK05953 precorrin-8X methylmutase; Validated
Probab=35.98 E-value=2.5e+02 Score=26.06 Aligned_cols=41 Identities=32% Similarity=0.307 Sum_probs=24.3
Q ss_pred cccCcccC--CCCCCEEeccCCCC-CCCChhhHHHhhhCCCCCceEEEE
Q 013729 337 HLPGMVAA--RTPLPVIGVPVRAS-ALDGLDSLLSIVQMPRGVPVATVA 382 (437)
Q Consensus 337 ~l~~~i~~--~~~~pVi~~p~~~~-~~~g~~~l~~~~~~~~gvp~~tv~ 382 (437)
.|..+|.. -.+..|||+|+..- ...--+. |. ..++|++|+.
T Consensus 134 ~l~~li~~g~~~PalVIG~PVGFV~AaESKe~-L~----~~~vP~It~~ 177 (208)
T PRK05953 134 ALVELVEAEEIRPALVIATPAGFIDADDAKER-LQ----DSLVPHITID 177 (208)
T ss_pred HHHHHHHhcCCCCCEEEEeCCcccCcHHHHHH-HH----hCCCCEEEEe
Confidence 45566643 36788999999732 1112222 22 3579999775
No 267
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=35.95 E-value=2e+02 Score=23.41 Aligned_cols=51 Identities=14% Similarity=0.016 Sum_probs=32.4
Q ss_pred EEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccC
Q 013729 300 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 355 (437)
Q Consensus 300 ~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 355 (437)
-+-++|-.|...++.+.++.++++|++++.......+.|... ..-+|.+|.
T Consensus 49 ~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~-----ad~~l~~~~ 99 (126)
T cd05008 49 LVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLARE-----ADYVLYLRA 99 (126)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHh-----CCEEEEecC
Confidence 345567778878888888888999988775544333333322 334555555
No 268
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=35.93 E-value=41 Score=33.49 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=19.3
Q ss_pred eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 128 GIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 128 G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
-++.+|+..++||+++|+|.|.|.++
T Consensus 69 ~~~g~Dl~r~~dG~w~VleDn~~~Ps 94 (330)
T PF04174_consen 69 HFYGADLVRDPDGRWRVLEDNTRAPS 94 (330)
T ss_dssp SEEEEEEEE-SSS-EEEEEEE-SS--
T ss_pred EEEEEeeeECCCCCEEEEEecCCCCc
Confidence 37889999999999999999999874
No 269
>PRK14680 hypothetical protein; Provisional
Probab=35.85 E-value=1.3e+02 Score=25.76 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCC-------c-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 112 LATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 112 ~i~~~a~~i~~alg~-------~-G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
.-++.|.+.++.-|| + ....||++..+++.+.|+||-.|-+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lVFVEVKtR~~~ 60 (134)
T PRK14680 11 HGEDAAAALLQRTGHRILARNWRHGGLELDIVCEDGDTIVFVEVKTRAAH 60 (134)
T ss_pred HHHHHHHHHHHHCCCEEEEeecCCCCCeEEEEEEeCCEEEEEEEEecCCC
Confidence 456677777777765 2 34679999877778999999999763
No 270
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=35.68 E-value=81 Score=28.99 Aligned_cols=41 Identities=37% Similarity=0.561 Sum_probs=19.6
Q ss_pred cccCccc--CCCCCCEEeccCCC-CCCCChhhHHHhhhCCCCCceEEEE
Q 013729 337 HLPGMVA--ARTPLPVIGVPVRA-SALDGLDSLLSIVQMPRGVPVATVA 382 (437)
Q Consensus 337 ~l~~~i~--~~~~~pVi~~p~~~-~~~~g~~~l~~~~~~~~gvp~~tv~ 382 (437)
.|..++. +..+..|||+|++. ....--+.|++ .++|++|+.
T Consensus 134 ~ll~li~~~~~~PalVIg~PVGFV~A~ESKe~L~~-----~~vP~I~~~ 177 (198)
T PF02570_consen 134 ELLELIEEGGVRPALVIGVPVGFVGAAESKEALMQ-----SGVPYITVR 177 (198)
T ss_dssp HHHHHHHTTT-TTSEEEE---SSSSHHHHHHHHHH-----STS-EEEES
T ss_pred HHHHHHHhcCCCCcEEEECCCcccCcHHHHHHHHh-----CCCCEEEEe
Confidence 3445553 35678899999962 11111233332 299999875
No 271
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=35.58 E-value=1.6e+02 Score=22.41 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=29.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 278 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 278 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
+.+.-|.+..+.+.|++.|++++...+..+. +++..++++
T Consensus 7 t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~-~~~~~~~~~ 46 (80)
T COG0695 7 TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDE-PEEAREMVK 46 (80)
T ss_pred ECCCCchHHHHHHHHHHcCCCcEEEEecCCc-HHHHHHHHH
Confidence 4556899999999999999999876665444 344556664
No 272
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=35.22 E-value=1.5e+02 Score=29.02 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=49.4
Q ss_pred eEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEcc---CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhH
Q 013729 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGS---DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDL 312 (437)
Q Consensus 236 ~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs---~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~ 312 (437)
.+.+--...+.+..+++=.....+.+ ....++||.|+ ......++.+.+.|++.|-++..-+++ +=+|++
T Consensus 182 ~~~~e~~~~~~~~~l~~R~~~i~ka~------~a~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~-~i~~~k 254 (307)
T PF01866_consen 182 TLSVEDISYDIERLLRRRYALIEKAK------DAKTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSVG-EINPAK 254 (307)
T ss_dssp T--EEE----THHHHHHHHHHHHHHT------T--EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEES-S--GGG
T ss_pred cceeecccccHHHHHHHHHHHHHHHh------cCCEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEEC-CCCHHH
Confidence 45444335555555554444444332 34678888884 666788888889999999997766655 777877
Q ss_pred HHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEe
Q 013729 313 MFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIG 352 (437)
Q Consensus 313 ~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~ 352 (437)
+..|- .++++|..|=-...+-+ ...-.+||++
T Consensus 255 L~nf~------eid~fV~~aCPr~~idd--~~~f~kPvlt 286 (307)
T PF01866_consen 255 LANFP------EIDAFVQIACPRLSIDD--SKDFYKPVLT 286 (307)
T ss_dssp GTTS---------SEEEE-S-THHHHT----S--SS-EE-
T ss_pred HhcCc------ccCEEEEecCCCcccCc--hhhcCCcccC
Confidence 77774 37777765511111211 2345667765
No 273
>PRK09526 lacI lac repressor; Reviewed
Probab=34.93 E-value=3.9e+02 Score=25.82 Aligned_cols=84 Identities=8% Similarity=-0.009 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhccCCcc-------cccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 247 GLVESRLNSLLKEDSSD-------CQFKILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 247 ~eA~~k~~~a~~~i~~~-------~~~~~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
++..+|..++++++... ....+.+.|+++..+.++ ...+..+.+.+.++|+.+..... .+..++...++
T Consensus 34 ~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~~-~~~~~~~~~~~ 112 (342)
T PRK09526 34 AKTREKVEAAMAELNYVPNRVAQQLAGKQSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISMV-ERSGVEACQAA 112 (342)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEeC-CCChHHHHHHH
Confidence 55666666666554332 011133568888754322 23455566778889988765422 12234545566
Q ss_pred HhhhhhcCCeEEEEe
Q 013729 317 ASSAHERGIEIIIAG 331 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~ 331 (437)
+..+..++++-+|..
T Consensus 113 l~~l~~~~vdGiii~ 127 (342)
T PRK09526 113 VNELLAQRVSGVIIN 127 (342)
T ss_pred HHHHHhcCCCEEEEe
Confidence 777777888866553
No 274
>PRK04247 hypothetical protein; Provisional
Probab=34.91 E-value=4e+02 Score=25.27 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=17.5
Q ss_pred EEEEEEE-eCCCcEEEEEEcCCCC
Q 013729 130 FAVELFW-TNNGQILLNEVAPRPH 152 (437)
Q Consensus 130 ~~ve~~~-~~dg~~~viEiNpR~~ 152 (437)
..+|++. +++|.+.++|+-.|-+
T Consensus 160 G~IDila~D~~G~lViVEvKrr~~ 183 (238)
T PRK04247 160 GIIDILGRDKDGNLVVLELKRRRA 183 (238)
T ss_pred CceeEEEECCCCCEEEEEEEEccC
Confidence 4577664 5568899999999965
No 275
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=34.89 E-value=1.3e+02 Score=29.96 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCC-hhHHHHhHhhhhhcCCeE
Q 013729 279 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRT-PDLMFSYASSAHERGIEI 327 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~-p~~~~~~~~~~~~~g~~v 327 (437)
.++.....+..+..+++|+.+......+|+. |+.+.++.+.+++-|++.
T Consensus 111 ~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~ 160 (337)
T PRK08195 111 CTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQC 160 (337)
T ss_pred cchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCE
Confidence 3444555555555566666555555555554 455555555555555553
No 276
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=34.85 E-value=4.4e+02 Score=25.72 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=40.6
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC----CCChhHHHHhHhhhhhcC----CeEEEEeccc
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA----HRTPDLMFSYASSAHERG----IEIIIAGAGG 334 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~----hr~p~~~~~~~~~~~~~g----~~v~i~~ag~ 334 (437)
..+|+||+..+ -.........++..+..++..+..+ ...|....+-++.+.+.+ ++|+|.+-||
T Consensus 14 p~~I~vITs~~--gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 14 PKRIAVITSPT--GAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred CCEEEEEeCCc--hHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC
Confidence 35799998543 4667777788877665554444322 245666777676665544 8877776643
No 277
>PRK14688 hypothetical protein; Provisional
Probab=34.19 E-value=1.4e+02 Score=25.16 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcC-------Cc-eEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeeccccHHHHHHHHH
Q 013729 111 ELATDVAHKAVSSLE-------GA-GIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAV 174 (437)
Q Consensus 111 ~~i~~~a~~i~~alg-------~~-G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~~~~~~~~~~~~~~a 174 (437)
..-++.|.+.++.-| ++ +...||++..+++.+.|+||-.|.+.+-..-.++.+..--...++++
T Consensus 10 ~~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lVFVEVK~R~~~~~g~~~eaV~~~K~~ri~~aA 81 (121)
T PRK14688 10 EFGEKLAAEYLKGMGYSIIQTNCRLPEGEIDIVGQDGEYLVFIEVRTKRRLGYGLPAESVTPRKKAHLMASA 81 (121)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeeCCCCcEeEEEeeCCEEEEEEEEecCCCCCCChHHcCCHHHHHHHHHHH
No 278
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=33.93 E-value=3.9e+02 Score=27.43 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=55.7
Q ss_pred EEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC-------------
Q 013729 240 TIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA------------- 306 (437)
Q Consensus 240 i~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~------------- 306 (437)
+..|+|..+++.+.....+.-... |...-|-. ..--+..+...+.++.+.+++.++++++-++..
T Consensus 2 ~~~G~~~~~v~~~y~~ltG~~~~p-P~walG~~-~~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d~ 79 (441)
T PF01055_consen 2 FFSGPTPKEVLRQYTELTGRPPLP-PRWALGFW-QSRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWDP 79 (441)
T ss_dssp EEEESSHHHHHHHHHHHHSSS-----GGGGSEE-EEESTBTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-T
T ss_pred EEeCcCHHHHHHHHHHHHCCCCCC-chhhhceE-eecCcCCCHHHHHHHHHHHHHcCCCccceecccccccccccccccc
Confidence 457899999999999988864321 11122333 223344558889999999999999999877542
Q ss_pred CCChhHHHHhHhhhhhcCCeEEEE
Q 013729 307 HRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 307 hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
+|-|+ ..++++.++++|+++..-
T Consensus 80 ~~FPd-~~~~~~~l~~~G~~~~~~ 102 (441)
T PF01055_consen 80 ERFPD-PKQMIDELHDQGIKVVLW 102 (441)
T ss_dssp TTTTT-HHHHHHHHHHTT-EEEEE
T ss_pred ccccc-hHHHHHhHhhCCcEEEEE
Confidence 22232 566666778899996644
No 279
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=33.81 E-value=1.5e+02 Score=29.55 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=32.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC-hhHHHHhHhhhhhcCCeEE
Q 013729 278 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT-PDLMFSYASSAHERGIEII 328 (437)
Q Consensus 278 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~-p~~~~~~~~~~~~~g~~v~ 328 (437)
..++.+...+..+..+++|+.+......+|++ |+.+.++.+.+++-|++++
T Consensus 109 ~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 109 HCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred ccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEE
Confidence 34455666677777777777766666555654 4566666666666676643
No 280
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=33.74 E-value=4.3e+02 Score=26.14 Aligned_cols=54 Identities=37% Similarity=0.397 Sum_probs=32.5
Q ss_pred EEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC
Q 013729 300 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 356 (437)
Q Consensus 300 ~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~ 356 (437)
-+-++|-.++..++.+.++.++++|++++....++ .|... +..-..|+|.+|..
T Consensus 81 lvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~~--~L~~~-a~~~~~~~i~ip~~ 134 (337)
T PRK08674 81 LVIAVSYSGNTEETLSAVEQALKRGAKIIAITSGG--KLKEM-AKEHGLPVIIVPGG 134 (337)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCCc--hHHHH-HHhcCCeEEEeCCC
Confidence 34455667777777777777788888755443322 24443 22236678887753
No 281
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=33.62 E-value=1e+02 Score=23.91 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEec
Q 013729 285 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 353 (437)
Q Consensus 285 ~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~ 353 (437)
+..+.+.|++.||.+.-- -+.. ..++++++++ .|...++.++=...+..||||-
T Consensus 10 Ls~v~~~L~~~GyeVv~l-~~~~-------------~~~~~daiVv-tG~~~n~mg~~d~~~~~pVInA 63 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDL-ENEQ-------------DLQNVDAIVV-TGQDTNMMGIQDTSTKVPVINA 63 (80)
T ss_pred chHHHHHHHHCCCEEEec-CCcc-------------ccCCcCEEEE-ECCCcccccccccccCceEEec
Confidence 556778899999984322 0101 1235776664 4677788887666788899984
No 282
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=33.60 E-value=1.3e+02 Score=26.87 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec-cccccccCccc--------CCCCCCEEeccC
Q 013729 285 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA-GGAAHLPGMVA--------ARTPLPVIGVPV 355 (437)
Q Consensus 285 ~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a-g~~~~l~~~i~--------~~~~~pVi~~p~ 355 (437)
..++.+.-+..|.++++.. .|||.++..++.+.+++.|...+.... .....+|++-. |.-..=|+=||.
T Consensus 20 p~eiveLa~~~~A~iEVNL--FyRT~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~~v~~~GIy~ADVVLVPL 97 (178)
T PF02006_consen 20 PEEIVELAKATGAKIEVNL--FYRTEERVEKIAELLREHGAEEVLGVNPDASERIPGLDHERAKVSKEGIYSADVVLVPL 97 (178)
T ss_pred hHHHHHHHHHhCCCEEEEc--ccCCHHHHHHHHHHHHHcCCCEeeccCCcccccCCCCCCccceECcccceeccEEEecc
Confidence 4555666677899999886 499999999999999999998555432 11224555432 234456777887
Q ss_pred C
Q 013729 356 R 356 (437)
Q Consensus 356 ~ 356 (437)
.
T Consensus 98 E 98 (178)
T PF02006_consen 98 E 98 (178)
T ss_pred C
Confidence 4
No 283
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=33.52 E-value=2.2e+02 Score=25.25 Aligned_cols=57 Identities=14% Similarity=0.313 Sum_probs=34.6
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
.++++++.- .+..+.+..+.+. +|+++..... .+++++...++++...|++|+|...
T Consensus 77 ~~~Iavv~~-~~~~~~~~~~~~l---l~~~i~~~~~---~~~~e~~~~i~~~~~~G~~viVGg~ 133 (176)
T PF06506_consen 77 GPKIAVVGY-PNIIPGLESIEEL---LGVDIKIYPY---DSEEEIEAAIKQAKAEGVDVIVGGG 133 (176)
T ss_dssp TSEEEEEEE-SS-SCCHHHHHHH---HT-EEEEEEE---SSHHHHHHHHHHHHHTT--EEEESH
T ss_pred CCcEEEEec-ccccHHHHHHHHH---hCCceEEEEE---CCHHHHHHHHHHHHHcCCcEEECCH
Confidence 357777653 3333334444433 5777655543 4688899999999999999998643
No 284
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=33.35 E-value=2.1e+02 Score=27.54 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=44.7
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh-cCCeEEEEecc
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE-RGIEIIIAGAG 333 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~-~g~~v~i~~ag 333 (437)
++.++|+|.++ ....+.++.|.+.|+++-+. -|+-+++.+..++.++ .|++|.+..+.
T Consensus 6 ~~~~lITGASs--GIG~~~A~~lA~~g~~liLv----aR~~~kL~~la~~l~~~~~v~v~vi~~D 64 (265)
T COG0300 6 GKTALITGASS--GIGAELAKQLARRGYNLILV----ARREDKLEALAKELEDKTGVEVEVIPAD 64 (265)
T ss_pred CcEEEEECCCc--hHHHHHHHHHHHCCCEEEEE----eCcHHHHHHHHHHHHHhhCceEEEEECc
Confidence 44458999876 66788999999999998877 6888888888777665 45777766553
No 285
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=33.30 E-value=1.9e+02 Score=23.62 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=31.8
Q ss_pred EccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 276 MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 276 ~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
+-|.+.-+....+...|..+|.++.+--.--|....+..+++.
T Consensus 18 ifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~ 60 (104)
T KOG1752|consen 18 IFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALK 60 (104)
T ss_pred EEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHH
Confidence 3357778888888889999998865555555666677777775
No 286
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=33.24 E-value=1.9e+02 Score=21.96 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=35.8
Q ss_pred EEEEEccC---CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 272 IGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 272 V~ii~gs~---sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
|.|+..++ .....+..++..|+..|+.++.... .+. +.+-++.++..|++..+...
T Consensus 4 v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~--~~~---~~k~~~~a~~~g~~~~iiig 62 (94)
T cd00738 4 VAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR--ERK---IGKKFREADLRGVPFAVVVG 62 (94)
T ss_pred EEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC--CcC---HhHHHHHHHhCCCCEEEEEC
Confidence 44554444 4577888888999999998776532 344 34444455777888555543
No 287
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=33.10 E-value=5.7e+02 Score=27.70 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=67.7
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLP 349 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~p 349 (437)
+.| +|.|-. +..+.+++.|.+.|+++.+- ..+|++..+. ++.|.+++..-+....-|-..=. ...+-
T Consensus 401 ~~v-II~G~G---r~G~~va~~L~~~g~~vvvI----D~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi-~~A~~ 467 (601)
T PRK03659 401 PQV-IIVGFG---RFGQVIGRLLMANKMRITVL----ERDISAVNLM----RKYGYKVYYGDATQLELLRAAGA-EKAEA 467 (601)
T ss_pred CCE-EEecCc---hHHHHHHHHHHhCCCCEEEE----ECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhcCC-ccCCE
Confidence 455 566654 66777788888888876555 5666655543 34577777765533222221111 12233
Q ss_pred EEe-ccCCCCCCCChhhHHHhhhCCCCCceEEEEeC---------------------CcchHHHHHHHHHccCChHHHHH
Q 013729 350 VIG-VPVRASALDGLDSLLSIVQMPRGVPVATVAIN---------------------NATNAGLLAVRMLGFGDADLRAR 407 (437)
Q Consensus 350 Vi~-~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~---------------------~~~~aa~~a~~~l~~~~~~~~~~ 407 (437)
||. ++-...+ .......-+.-|.+++.+-.-| .+...+-.+++.+++...++.++
T Consensus 468 vv~~~~d~~~n---~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~l~l~~~~L~~lg~~~~~~~~~ 544 (601)
T PRK03659 468 IVITCNEPEDT---MKIVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVSLGMHPHQAQRA 544 (601)
T ss_pred EEEEeCCHHHH---HHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 333 3322111 0100111122233333321111 24445556667788888889888
Q ss_pred HHHHHHHhHHHH
Q 013729 408 MQQYMEDMRDDV 419 (437)
Q Consensus 408 ~~~~~~~~~~~~ 419 (437)
++.+|...+..+
T Consensus 545 ~~~~r~~~~~~~ 556 (601)
T PRK03659 545 QQHFRRLDMRML 556 (601)
T ss_pred HHHHHHHHHHHH
Confidence 888886544443
No 288
>TIGR00252 conserved hypothetical protein TIGR00252. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment
Probab=32.87 E-value=1.6e+02 Score=24.67 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCC-------c-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 112 LATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 112 ~i~~~a~~i~~alg~-------~-G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
.-++.|...++.-|| + ....||++..+++.+.|+||-.|.+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lvFVEVK~R~~~ 60 (119)
T TIGR00252 11 AGESQARAWLEQKGLKFIAANWNSPWGEIDLIMHDTKTIAFVEVRTRSGG 60 (119)
T ss_pred HHHHHHHHHHHHCCCEEeEEEecCCCCcEEEEEeeCCEEEEEEEEecCCC
Confidence 345667777776664 3 34679998877788999999999764
No 289
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=32.83 E-value=1.7e+02 Score=27.50 Aligned_cols=89 Identities=18% Similarity=0.102 Sum_probs=53.3
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcc-----cccC---CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSD-----CQFK---ILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTP 310 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~-----~~~~---~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p 310 (437)
|-..|.|.++..+.+..+......+ ||.. ..+.-..+ -.|.+.+.++.+.+++.++++.+.+-.-+ +
T Consensus 77 vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~L---l~~p~~l~eiv~avr~~~~pVsvKir~g~-~- 151 (233)
T cd02911 77 VNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEAL---LKDPERLSEFIKALKETGVPVSVKIRAGV-D- 151 (233)
T ss_pred EEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHH---cCCHHHHHHHHHHHHhcCCCEEEEEcCCc-C-
Confidence 5566888888777766654432221 3321 11110011 24678888888888888999888753211 1
Q ss_pred hHHHHhHhhhhhcCCeEEEEec
Q 013729 311 DLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 311 ~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+.+.++.+.+++.|++.+-+..
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~ 173 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDA 173 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECc
Confidence 3466777777888999665433
No 290
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=32.79 E-value=1.9e+02 Score=20.95 Aligned_cols=37 Identities=22% Similarity=0.119 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 279 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++-+.+..+.+.|+++|++++..-+ ...++...++.
T Consensus 7 ~~~Cp~C~~ak~~L~~~~i~~~~i~i--~~~~~~~~~~~ 43 (75)
T cd03418 7 KPNCPYCVRAKALLDKKGVDYEEIDV--DGDPALREEMI 43 (75)
T ss_pred CCCChHHHHHHHHHHHCCCcEEEEEC--CCCHHHHHHHH
Confidence 45569999999999999999876543 45465555554
No 291
>PRK00861 putative lipid kinase; Reviewed
Probab=32.71 E-value=1.2e+02 Score=29.39 Aligned_cols=71 Identities=25% Similarity=0.297 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCC--CCCCEEeccCCC
Q 013729 282 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR--TPLPVIGVPVRA 357 (437)
Q Consensus 282 ~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~--~~~pVi~~p~~~ 357 (437)
.....++.+.|+. ++++++......++ ..++.+++.+.+.+++++ .||.+.+-.++.+. +..|+--+|.++
T Consensus 19 ~~~~~~i~~~l~~-~~~~~~~~t~~~~~---a~~~a~~~~~~~~d~vv~-~GGDGTl~evv~~l~~~~~~lgviP~GT 91 (300)
T PRK00861 19 EVDLALIRAILEP-EMDLDIYLTTPEIG---ADQLAQEAIERGAELIIA-SGGDGTLSAVAGALIGTDIPLGIIPRGT 91 (300)
T ss_pred hhhHHHHHHHHHh-cCceEEEEccCCCC---HHHHHHHHHhcCCCEEEE-ECChHHHHHHHHHHhcCCCcEEEEcCCc
Confidence 3455666667776 47777776665554 345555555567776665 45665555555443 233444456653
No 292
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=32.68 E-value=2.6e+02 Score=26.16 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCC---ChhHHHHhHhhhhhcCCeEE
Q 013729 281 DLPVMKDAAKILTMFSVPHEVRIVSAHR---TPDLMFSYASSAHERGIEII 328 (437)
Q Consensus 281 D~~~~~~~~~~L~~~G~~~~~~v~s~hr---~p~~~~~~~~~~~~~g~~v~ 328 (437)
+.+.+.++.+.+++.|+++...+..+.| +|+.+.++.+.+.+.|++.+
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i 163 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEI 163 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 4566777777777788777666654454 56666777777777776643
No 293
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.53 E-value=1.2e+02 Score=29.17 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=8.8
Q ss_pred cCCCChhHHHHhHhhhhhcCCe
Q 013729 305 SAHRTPDLMFSYASSAHERGIE 326 (437)
Q Consensus 305 s~hr~p~~~~~~~~~~~~~g~~ 326 (437)
..+..+++-.+++.++..++++
T Consensus 38 ~~~~~~~~q~~~i~~l~~~~vd 59 (303)
T cd01539 38 DAKNNQSTQNEQIDTALAKGVD 59 (303)
T ss_pred cCCCCHHHHHHHHHHHHHcCCC
Confidence 3344444333334333344444
No 294
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=32.40 E-value=1.8e+02 Score=27.95 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=16.1
Q ss_pred ChhhHHHhhhCCCCCceEEEEeCC-cchHHHHHHHH
Q 013729 362 GLDSLLSIVQMPRGVPVATVAINN-ATNAGLLAVRM 396 (437)
Q Consensus 362 g~~~l~~~~~~~~gvp~~tv~~~~-~~~aa~~a~~~ 396 (437)
|+.---+..++..|+-.+-..+++ +..|+-.+.+.
T Consensus 195 Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~ 230 (266)
T cd07944 195 QLALANTLEAIELGVEIIDATVYGMGRGAGNLPTEL 230 (266)
T ss_pred cHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHH
Confidence 443223555567776666222222 33444444444
No 295
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=32.36 E-value=3.9e+02 Score=24.35 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=35.4
Q ss_pred HHHHHcCCcEE-EEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC
Q 013729 290 KILTMFSVPHE-VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 356 (437)
Q Consensus 290 ~~L~~~G~~~~-~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~ 356 (437)
+.|..++-+=| +-++|.-+.-+.+.+.++.++++|++++.......+.|..+. ...+.+|.+|..
T Consensus 101 ~ql~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~--~~~D~~i~ip~~ 166 (196)
T PRK10886 101 KQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLL--GPQDVEIRIPSH 166 (196)
T ss_pred HHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhcc--ccCCEEEEcCCC
Confidence 44444444411 222444555555777777888888886655443333444432 135667777763
No 296
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=32.32 E-value=45 Score=31.10 Aligned_cols=78 Identities=19% Similarity=0.408 Sum_probs=41.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcE--------EEEEecCCCChhHHHHh-----HhhhhhcCCeEE-EEecccc
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPH--------EVRIVSAHRTPDLMFSY-----ASSAHERGIEII-IAGAGGA 335 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~--------~~~v~s~hr~p~~~~~~-----~~~~~~~g~~v~-i~~ag~~ 335 (437)
.++.|++......+.+ .+.++.+|..- +..+...|+.|++.... .+..++.|.+++ ..+|||+
T Consensus 110 rrfsViTtt~rs~~il---~~lv~~~g~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms 186 (230)
T COG4126 110 RRFSVITTTERSRPIL---EELVRSYGLSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMS 186 (230)
T ss_pred ceEEEEecCcccHHHH---HHHHHhcCccccccceeeCCCCcccccCChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHH
Confidence 3566776444333333 34557777762 33455567766655543 345567788855 4466665
Q ss_pred ccccCcccCCCCCCEE
Q 013729 336 AHLPGMVAARTPLPVI 351 (437)
Q Consensus 336 ~~l~~~i~~~~~~pVi 351 (437)
+|...+.-..-.|||
T Consensus 187 -~la~~Lq~~~gvPVI 201 (230)
T COG4126 187 -DLADQLQKAFGVPVI 201 (230)
T ss_pred -HHHHHHHHHhCCCcc
Confidence 554444333334444
No 297
>PRK14682 hypothetical protein; Provisional
Probab=32.01 E-value=1.6e+02 Score=24.50 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCC-------c--eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 112 LATDVAHKAVSSLEG-------A--GIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 112 ~i~~~a~~i~~alg~-------~--G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
.-++.|.+.++.-|| + +...+|++..+++.+.|+||-.|-+.
T Consensus 9 ~gE~~A~~~L~~~Gy~Il~rN~r~~~~GEIDiIa~~~~~lvFVEVKtR~~~ 59 (117)
T PRK14682 9 KAELQACKFLHTQALEILAHNFKALPYGEIDIIALDKDTLVFIEVKYRSKT 59 (117)
T ss_pred HHHHHHHHHHHHCCCEEeeeeEECCCCCcEEEEEeeCCEEEEEEEEecCCC
Confidence 345667777776664 3 34568998877788999999999874
No 298
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=31.78 E-value=1.3e+02 Score=28.02 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=6.6
Q ss_pred HhhhhhcCCeEEEE
Q 013729 317 ASSAHERGIEIIIA 330 (437)
Q Consensus 317 ~~~~~~~g~~v~i~ 330 (437)
++.+++.|++++..
T Consensus 73 i~~~~~~~ipvV~~ 86 (273)
T cd06305 73 VKRALDAGIPVVAF 86 (273)
T ss_pred HHHHHHcCCCEEEe
Confidence 33444555554443
No 299
>PRK13055 putative lipid kinase; Reviewed
Probab=31.77 E-value=1.1e+02 Score=30.35 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=44.1
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCC---CCCCEEe-
Q 013729 277 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR---TPLPVIG- 352 (437)
Q Consensus 277 gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~---~~~pVi~- 352 (437)
|+.+......++.+.|.+.|+.++.....-+ +....++.+++...+.+++|++ ||.+-+-.++.+. ...|.++
T Consensus 14 G~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~--~~~a~~~~~~~~~~~~d~vvv~-GGDGTl~evvngl~~~~~~~~Lgi 90 (334)
T PRK13055 14 GQEIMKKNVADILDILEQAGYETSAFQTTPE--PNSAKNEAKRAAEAGFDLIIAA-GGDGTINEVVNGIAPLEKRPKMAI 90 (334)
T ss_pred CchhHHHHHHHHHHHHHHcCCeEEEEEeecC--CccHHHHHHHHhhcCCCEEEEE-CCCCHHHHHHHHHhhcCCCCcEEE
Confidence 3333355667788889999998775443222 2223445555555677766654 5666555555443 2234455
Q ss_pred ccCCC
Q 013729 353 VPVRA 357 (437)
Q Consensus 353 ~p~~~ 357 (437)
+|.++
T Consensus 91 iP~GT 95 (334)
T PRK13055 91 IPAGT 95 (334)
T ss_pred ECCCc
Confidence 57653
No 300
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=31.38 E-value=1.2e+02 Score=30.90 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=66.8
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEec
Q 013729 274 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 353 (437)
Q Consensus 274 ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~ 353 (437)
+|-|+- .+...++..|...|- .+++++ -|+++...++...... .++...+-+.....|..+|++. +.||||
T Consensus 5 lviGaG---~Vg~~va~~la~~~d-~~V~iA--dRs~~~~~~i~~~~~~-~v~~~~vD~~d~~al~~li~~~--d~VIn~ 75 (389)
T COG1748 5 LVIGAG---GVGSVVAHKLAQNGD-GEVTIA--DRSKEKCARIAELIGG-KVEALQVDAADVDALVALIKDF--DLVINA 75 (389)
T ss_pred EEECCc---hhHHHHHHHHHhCCC-ceEEEE--eCCHHHHHHHHhhccc-cceeEEecccChHHHHHHHhcC--CEEEEe
Confidence 455553 667778888888875 566664 5999999988643211 4666676665666888888766 999999
Q ss_pred cCCCCCCCChhhHHHhhhCCCCCceEEEEeCCc
Q 013729 354 PVRASALDGLDSLLSIVQMPRGVPVATVAINNA 386 (437)
Q Consensus 354 p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~ 386 (437)
-++.- .+. ....++..|+++.++..+..
T Consensus 76 ~p~~~---~~~--i~ka~i~~gv~yvDts~~~~ 103 (389)
T COG1748 76 APPFV---DLT--ILKACIKTGVDYVDTSYYEE 103 (389)
T ss_pred CCchh---hHH--HHHHHHHhCCCEEEcccCCc
Confidence 65422 122 44567799999997665443
No 301
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=31.33 E-value=2.1e+02 Score=24.15 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=46.9
Q ss_pred CceeEEEEEEcCCHHHHH-HHHHHhhccCCcc-cccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCc---EEEEEecCC
Q 013729 233 QRKMGHITIVGSSMGLVE-SRLNSLLKEDSSD-CQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVP---HEVRIVSAH 307 (437)
Q Consensus 233 ~~~~G~Vi~~G~s~~eA~-~k~~~a~~~i~~~-~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~---~~~~v~s~h 307 (437)
.-|+-.|++.|+=-.+-. ....+.++-+-.- + +.+..-+.+|+..-+..++-+.+.|+++|+. ++.-.+|+.
T Consensus 29 ~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC---~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~ 105 (132)
T COG1908 29 NVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGC---KIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAA 105 (132)
T ss_pred ceEEEEeeccCccCHHHHHHHHHcCCCeEEEecc---cccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehh
Confidence 457888999998444444 3333333322110 1 2244557888888889999999999999998 556666643
No 302
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=30.68 E-value=3.4e+02 Score=26.07 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHH-HcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecc
Q 013729 282 LPVMKDAAKILT-MFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG 333 (437)
Q Consensus 282 ~~~~~~~~~~L~-~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag 333 (437)
...-..+++.|+ +.|++.-.+++.-.++...+.+++..+.+.|++=+.+..|
T Consensus 43 ~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~G 95 (272)
T TIGR00676 43 RDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRG 95 (272)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 344445556666 6799987777777888888888888888889886665554
No 303
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=30.66 E-value=1e+02 Score=30.04 Aligned_cols=89 Identities=16% Similarity=0.056 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHhhccC--CcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCChhHHHHhHhhhh
Q 013729 245 SMGLVESRLNSLLKED--SSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVP-HEVRIVSAHRTPDLMFSYASSAH 321 (437)
Q Consensus 245 s~~eA~~k~~~a~~~i--~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~-~~~~v~s~hr~p~~~~~~~~~~~ 321 (437)
|.....+-..+....+ ..+..- +.+.+.|+..=.- -.+..+.+++.|+. +|+|=--- .++.+.++++.
T Consensus 43 N~~Vv~~L~~~Gv~~v~~~~~~~v-~~~~~ViirAHGv----~~~~~~~~~~~g~~viDaTCP~V----~k~~~~v~~~~ 113 (281)
T PRK12360 43 NNQVVSDLEEKGVKTIEESEIDSL-KEGDVVIIRSHGV----SKKVYKDLKDKGLEIIDATCPFV----KKIQNIVEEYY 113 (281)
T ss_pred CHHHHHHHHHCcCEEECcCchhhC-CCCCEEEEeCCCC----CHHHHHHHHHCCCeEEeCCCccc----hHHHHHHHHHH
Confidence 5555444444445445 332111 1132325543222 22334455667777 36662111 23555566667
Q ss_pred hcCCeEEEEeccccccccCcc
Q 013729 322 ERGIEIIIAGAGGAAHLPGMV 342 (437)
Q Consensus 322 ~~g~~v~i~~ag~~~~l~~~i 342 (437)
++|..+++.+.-..+..-|++
T Consensus 114 ~~Gy~iviiG~~~HpEv~gi~ 134 (281)
T PRK12360 114 NKGYSIIIVGDKNHPEVIGIN 134 (281)
T ss_pred hCCCEEEEEcCCCCceeeEec
Confidence 789998888665555555544
No 304
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=30.61 E-value=4.7e+02 Score=24.76 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=37.3
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCe
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIE 326 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~ 326 (437)
.+|.|++|+-.+=....-+++.|...|+++++-..+ +..++......+.+++.|.+
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~-~~~~~~~~~~~~~~~~~g~~ 116 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPK-QSSKPHYENLVTQCEDLGIP 116 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcC-CCChHHHHHHHHHHHHcCCC
Confidence 568899998888888999999999999987776522 22222213333444555554
No 305
>PRK09492 treR trehalose repressor; Provisional
Probab=30.43 E-value=4.1e+02 Score=25.30 Aligned_cols=83 Identities=8% Similarity=0.090 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhccCCcc-------cccCCCCeEEEEEccCC---CHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 247 GLVESRLNSLLKEDSSD-------CQFKILPRIGIIMGSDS---DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 247 ~eA~~k~~~a~~~i~~~-------~~~~~~~~V~ii~gs~s---D~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
+|..++..++++++... ....+...|+++....+ ....+..+.+.+.+.|+.+.. .+....++...++
T Consensus 33 ~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~~--~~~~~~~~~~~~~ 110 (315)
T PRK09492 33 EETRERVEAVINQHGFSPSKSARAMRGQSDKVVGIIVSRLDSLSENQAVRTMLPAFYEQGYDPII--MESQFSPEKVNEH 110 (315)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCeEEEEecCCcCcccHHHHHHHHHHHHHcCCeEEE--EecCCChHHHHHH
Confidence 45555555555544321 00113346777764322 244566667888889987543 3445667766677
Q ss_pred HhhhhhcCCeEEEEe
Q 013729 317 ASSAHERGIEIIIAG 331 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~ 331 (437)
+..+..++++-+|..
T Consensus 111 ~~~l~~~~vdgiIi~ 125 (315)
T PRK09492 111 LGVLKRRNVDGVILF 125 (315)
T ss_pred HHHHHhcCCCEEEEe
Confidence 777777788866654
No 306
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=29.95 E-value=1.5e+02 Score=28.08 Aligned_cols=51 Identities=27% Similarity=0.450 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhH-----------HHHhHhhhhhcCCeEEE
Q 013729 279 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDL-----------MFSYASSAHERGIEIII 329 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~-----------~~~~~~~~~~~g~~v~i 329 (437)
.+|.+.+.++++.|.+.|+++-+.|+--+..|.. +.++++.++.+|-.+..
T Consensus 12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~l 73 (243)
T PF10096_consen 12 FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVL 73 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEE
Confidence 3899999999999999999999888887776654 34456677788876654
No 307
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=29.95 E-value=5.5e+02 Score=25.35 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=40.9
Q ss_pred hhhhhcCCeEEEEeccccccccCc--c----------cC-CCCCCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEE
Q 013729 318 SSAHERGIEIIIAGAGGAAHLPGM--V----------AA-RTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVA 382 (437)
Q Consensus 318 ~~~~~~g~~v~i~~ag~~~~l~~~--i----------~~-~~~~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~ 382 (437)
++.+.+|-+.+++..|+++.+..+ + .. ...+-|+-+|.+++...|+- ....+.-+.++|++++
T Consensus 139 e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~--~g~~~~~~~~~ViG~~ 214 (323)
T COG2515 139 EEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLL--VGLAQLGPDVEVIGID 214 (323)
T ss_pred HHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHH--HHhhhccCCCceEEEe
Confidence 344677888888888885543322 1 11 34567778887766666665 4555566888888776
No 308
>PRK12497 hypothetical protein; Reviewed
Probab=29.87 E-value=2e+02 Score=23.92 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCc--------eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 112 LATDVAHKAVSSLEGA--------GIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 112 ~i~~~a~~i~~alg~~--------G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
.-+++|.+.++..||. ....||++..+++.++|+||-.|-+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lvFVEVK~R~~~ 60 (119)
T PRK12497 11 AGEDLAARYLESKGLRILARNFRCRFGEIDLIARDGDTLVFVEVKTRRSD 60 (119)
T ss_pred HHHHHHHHHHHHCCCEEEcceecCCCCcEeeeEEeCCEEEEEEEEeccCC
Confidence 3466777777776653 34679988876788999999999764
No 309
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=29.72 E-value=2.6e+02 Score=26.91 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=26.4
Q ss_pred HHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 291 ILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 291 ~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
.+..++=.-.+-++|-.|...++.+.++.++++|++++-.
T Consensus 171 ~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIai 210 (281)
T COG1737 171 QLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAI 210 (281)
T ss_pred HHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 4445554544555666777777888888888888876543
No 310
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows a high degree of sequence conservation [, ]. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 4ECD_B 1Q1L_D 1QXO_A 1UMF_B 1UM0_D 1SQ1_A 2O12_A 2O11_A 1ZTB_A 2QHF_A ....
Probab=29.61 E-value=97 Score=31.03 Aligned_cols=63 Identities=29% Similarity=0.433 Sum_probs=37.4
Q ss_pred hHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC--CCCCCChhhHHHhhhCCCCCc-eEEEEeCCcc
Q 013729 311 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNAT 387 (437)
Q Consensus 311 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~--~~~~~g~~~l~~~~~~~~gvp-~~tv~~~~~~ 387 (437)
+++.+++.++++.|- .|.|.+ ..-|.|+|.. +..+|.+|+.|+..-|. || |=-|.++.++
T Consensus 182 ~~m~~~I~~ak~~gD-----------SlGG~v----e~~~~gvP~GLG~p~fdkLda~la~al~s--IpAvKgvEfG~Gf 244 (346)
T PF01264_consen 182 EEMKELIDEAKKEGD-----------SLGGIV----EVVATGVPAGLGSPVFDKLDARLAQALMS--IPAVKGVEFGDGF 244 (346)
T ss_dssp HHHHHHHHHHHHTTG-----------GB-EEE----EEEEES--TT-SBSSCCSHHHHHHHHHHT--STTEEEEEETTGG
T ss_pred HHHHHHHHHHHHhCC-----------CCCeEE----EEEEEecCCCCCCCCcCcHHHHHHHHhhC--CCCeeeEEecCcH
Confidence 345566666666542 333333 4456677774 34488999999776662 23 5588888887
Q ss_pred hHH
Q 013729 388 NAG 390 (437)
Q Consensus 388 ~aa 390 (437)
.+|
T Consensus 245 ~~a 247 (346)
T PF01264_consen 245 EAA 247 (346)
T ss_dssp GGG
T ss_pred HHh
Confidence 765
No 311
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=29.40 E-value=3.5e+02 Score=26.97 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=53.5
Q ss_pred EEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEcc---CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHH
Q 013729 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGS---DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLM 313 (437)
Q Consensus 237 G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs---~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~ 313 (437)
+.+.-...+....+++=.....+.+ .-..++||.|+ ......++.+.+.|++.|.++..-+++ .=+|+++
T Consensus 206 ~~~~~~~~~~~~~l~rR~~~I~ka~------~A~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~-~in~~kL 278 (332)
T TIGR00322 206 GEFTRIGEDAKQFVKVRALAISKAR------KGKKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILLS-NVSPAKL 278 (332)
T ss_pred CceeEccccHHHHHHHHHHHHHHHh------cCCEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHH
Confidence 4444444555566655444444322 33567788764 456778888889999999998777666 7778777
Q ss_pred HHhHhhhhhcCCeEEEEec
Q 013729 314 FSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 314 ~~~~~~~~~~g~~v~i~~a 332 (437)
+.|. .+++++..|
T Consensus 279 ~nf~------eiD~fV~~a 291 (332)
T TIGR00322 279 LMFD------QIDVFVQVA 291 (332)
T ss_pred hCCC------CcCEEEEec
Confidence 7663 267666544
No 312
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=29.37 E-value=90 Score=23.28 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 279 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.+.-+.+..+...|+++|++++..-+ ...|+...++.
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di--~~~~~~~~~~~ 42 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRV--DGDPALRDEMM 42 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEe--cCCHHHHHHHH
Confidence 45568899999999999999876643 34555444443
No 313
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=29.24 E-value=1.1e+02 Score=28.74 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=45.9
Q ss_pred HHHHcCCcEEEEE-ecC--CCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccC
Q 013729 291 ILTMFSVPHEVRI-VSA--HRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 355 (437)
Q Consensus 291 ~L~~~G~~~~~~v-~s~--hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 355 (437)
.++.+|++....+ .+. .=+|+++.++.+.+++.++++++.-....+.+...++..+..+|+.+.+
T Consensus 163 ~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~ 230 (256)
T PF01297_consen 163 FAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDP 230 (256)
T ss_dssp HHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESST
T ss_pred HHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCC
Confidence 4477899966665 221 2358889999999999999999998877788888888888888877754
No 314
>PRK14684 hypothetical protein; Provisional
Probab=28.88 E-value=2.5e+02 Score=23.52 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCc--------eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 112 LATDVAHKAVSSLEGA--------GIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 112 ~i~~~a~~i~~alg~~--------G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
.-++.|.+.++.-||. ....||++..+++.+.|+||-.|.+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lvFVEVK~R~~~ 60 (120)
T PRK14684 11 NAEKTACRYLQKQGLSFITKNFRYKQGEIDLIMSDQSMLVFIEVRYRRFS 60 (120)
T ss_pred HHHHHHHHHHHHCCCEEEEEEecCCCCeEEEEEEeCCEEEEEEEeEcCCC
Confidence 4456677777766652 34679998877788999999999863
No 315
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=28.84 E-value=2.2e+02 Score=27.25 Aligned_cols=78 Identities=14% Similarity=0.087 Sum_probs=51.1
Q ss_pred EcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcE-EEEEecCCCChhHHHHhHhhh
Q 013729 242 VGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPH-EVRIVSAHRTPDLMFSYASSA 320 (437)
Q Consensus 242 ~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~-~~~v~s~hr~p~~~~~~~~~~ 320 (437)
.+.+.+|++.++.++....+... -.-.+.+-+.+.++.+.+.+..+.+.+.|... ..--....-+|+.+.++++.+
T Consensus 103 ~~~~~~e~~~~~~~~i~~a~~~G---~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 103 HGKSITEIIESAVEVIEFVKSKG---IEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred hCCCHHHHHHHHHHHHHHHHHCC---CeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHH
Confidence 46888999988887776544210 01123334456678888999999999998772 111123377899999988765
Q ss_pred hh
Q 013729 321 HE 322 (437)
Q Consensus 321 ~~ 322 (437)
++
T Consensus 180 ~~ 181 (262)
T cd07948 180 RG 181 (262)
T ss_pred HH
Confidence 54
No 316
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=28.72 E-value=1.5e+02 Score=28.24 Aligned_cols=83 Identities=17% Similarity=0.183 Sum_probs=43.0
Q ss_pred eeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHH-cCCcEEEEEecCCCChhHH
Q 013729 235 KMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVSAHRTPDLM 313 (437)
Q Consensus 235 ~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~-~G~~~~~~v~s~hr~p~~~ 313 (437)
++.-|.+-...+.+|.++.....+ .+| ++.+. ..+.++++++.+.. ......+. -+.++.+
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G-----------~~v-vl~aR--R~drL~~la~~~~~~~~~~~~~D----VtD~~~~ 68 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAG-----------AKV-VLAAR--REERLEALADEIGAGAALALALD----VTDRAAV 68 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCC-----------CeE-EEEec--cHHHHHHHHHhhccCceEEEeec----cCCHHHH
Confidence 444555555666677776654443 233 44433 35667776666553 11223333 2345555
Q ss_pred HHhHhhh-hhcC-CeEEEEecccc
Q 013729 314 FSYASSA-HERG-IEIIIAGAGGA 335 (437)
Q Consensus 314 ~~~~~~~-~~~g-~~v~i~~ag~~ 335 (437)
.++++.+ ++.| +++++-.||..
T Consensus 69 ~~~i~~~~~~~g~iDiLvNNAGl~ 92 (246)
T COG4221 69 EAAIEALPEEFGRIDILVNNAGLA 92 (246)
T ss_pred HHHHHHHHHhhCcccEEEecCCCC
Confidence 5555422 2333 77888877654
No 317
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=28.71 E-value=2.9e+02 Score=21.77 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=22.6
Q ss_pred eEEEEEccCCCHHHH--HHHHHHHHHcCCcEEEE
Q 013729 271 RIGIIMGSDSDLPVM--KDAAKILTMFSVPHEVR 302 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~--~~~~~~L~~~G~~~~~~ 302 (437)
++.+++|+---...+ .++.+.|++.|+++++.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~ 37 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELI 37 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEE
Confidence 455777754433444 67778899999998887
No 318
>PLN02754 chorismate synthase
Probab=28.68 E-value=1.7e+02 Score=30.01 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=38.7
Q ss_pred HHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC--CCCCCChhhHHHhhhCCCCCc-eEEEEeCCcch
Q 013729 312 LMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNATN 388 (437)
Q Consensus 312 ~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~--~~~~~g~~~l~~~~~~~~gvp-~~tv~~~~~~~ 388 (437)
++.+.+.++++.|- .|.|.+ ..-+.|||.. +..++.+|+.|+.+-|. || |--|.|+.++.
T Consensus 218 ~m~~~I~~ak~~GD-----------SlGGiv----ev~~~gvP~GLG~pvfdkLda~LA~Al~S--IpAVKGVEfG~GF~ 280 (413)
T PLN02754 218 KMIAAIDAVRVRGD-----------SVGGVV----TCIVRNVPRGLGSPVFDKLEAELAKAMMS--LPATKGFEIGSGFA 280 (413)
T ss_pred HHHHHHHHHHHcCC-----------CcccEE----EEEEECCCCCCCccccccchHHHHHHhcC--cCceeEEEEccchh
Confidence 45556666665442 333333 4566788875 34478899888877773 34 44888887766
Q ss_pred HH
Q 013729 389 AG 390 (437)
Q Consensus 389 aa 390 (437)
+|
T Consensus 281 ~a 282 (413)
T PLN02754 281 GT 282 (413)
T ss_pred hh
Confidence 54
No 319
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=28.60 E-value=4.4e+02 Score=27.93 Aligned_cols=111 Identities=20% Similarity=0.166 Sum_probs=73.2
Q ss_pred EEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 237 G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
..++....--.||+..++.--..+.. --|.++.+.+.=+|.-.++...++..|.|+.+-+--..|.+....+.
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtD-------IaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v 127 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTD-------IAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKV 127 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCcccc-------EEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHH
Confidence 45777777778999888765554331 23546666677799999999999999999988776666654444444
Q ss_pred HhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCCCCCCCChhhHHHhh
Q 013729 317 ASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIV 370 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~~~~ 370 (437)
..++.+.|+.+. .+.+. |+-||.|.....|++.||-++
T Consensus 128 ~~el~~~gl~~E------------~~gg~----v~~VpvSA~tg~Gi~eLL~~i 165 (509)
T COG0532 128 KQELQEYGLVPE------------EWGGD----VIFVPVSAKTGEGIDELLELI 165 (509)
T ss_pred HHHHHHcCCCHh------------hcCCc----eEEEEeeccCCCCHHHHHHHH
Confidence 444455444211 11111 778888766666887777554
No 320
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=28.58 E-value=1.2e+02 Score=31.82 Aligned_cols=109 Identities=13% Similarity=0.128 Sum_probs=58.6
Q ss_pred EccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcC--CeEEEEeccccccccCcccCCCCCCEEec
Q 013729 276 MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERG--IEIIIAGAGGAAHLPGMVAARTPLPVIGV 353 (437)
Q Consensus 276 ~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g--~~v~i~~ag~~~~l~~~i~~~~~~pVi~~ 353 (437)
-|+........++.+.|+++|++.-..+ +-.+|-.-..++.++++++| +.|+-+.+-..|+|++. ..-+|.
T Consensus 156 LGTSR~~~~~~~iv~~L~~~~I~~L~vI-GGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~t------d~S~GF 228 (459)
T PTZ00286 156 LGSSRGGFDPKVMVDTLIRHGINILFTL-GGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPII------DESFGF 228 (459)
T ss_pred eccCCChhhHHHHHHHHHHcCCCEEEEe-CCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCc------ccCcCc
Confidence 3555556778899999999999965554 44665544445555555566 44555555555655432 122233
Q ss_pred cCC-CCCCCChhhHHHhhhC-CCCCceE-EEEeCCcchHHHHHHH
Q 013729 354 PVR-ASALDGLDSLLSIVQM-PRGVPVA-TVAINNATNAGLLAVR 395 (437)
Q Consensus 354 p~~-~~~~~g~~~l~~~~~~-~~gvp~~-tv~~~~~~~aa~~a~~ 395 (437)
.+. .....-++.+...... +.|+-++ ++ +.+++.+|+.
T Consensus 229 dTAv~~~~~aI~~~~~eA~S~~~~v~iVEvM----GR~sG~LAl~ 269 (459)
T PTZ00286 229 QTAVEEAQNAIRAAYVEAKSAKNGVGIVKLM----GRDSGFIALH 269 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcEEEEEec----CcchhHHHHH
Confidence 221 0112223444444444 5576666 55 4455555443
No 321
>PRK10658 putative alpha-glucosidase; Provisional
Probab=28.32 E-value=4.6e+02 Score=28.93 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=61.5
Q ss_pred CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEc---cCCCHHHHHHHHHHHHHcCCcEEEEEecC---
Q 013729 233 QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMG---SDSDLPVMKDAAKILTMFSVPHEVRIVSA--- 306 (437)
Q Consensus 233 ~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~g---s~sD~~~~~~~~~~L~~~G~~~~~~v~s~--- 306 (437)
+..+=+.+..|+|..+++++-....+.-+.+ |...-|.. .+- ...+.+.+.+.++.+++.|+|+++-+...
T Consensus 233 g~~ldyy~~~G~tp~~v~~~Yt~LTGrp~lp-P~WalG~w--~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~ 309 (665)
T PRK10658 233 GEYLEYFVIDGPTPKEVLDRYTALTGRPALP-PAWSFGLW--LTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCFWM 309 (665)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHhCCCCCC-chhhhhee--eecccccCCCHHHHHHHHHHHHHcCCCceEEEEchhhh
Confidence 4556678889999999999988888864421 11122221 111 12356678889999999999988754433
Q ss_pred ------------CCChhHHHHhHhhhhhcCCeEEEE
Q 013729 307 ------------HRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 307 ------------hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
.|-|+ -.++++++++.|+++.+-
T Consensus 310 ~~~~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~ 344 (665)
T PRK10658 310 KEFQWCDFEWDPRTFPD-PEGMLKRLKAKGLKICVW 344 (665)
T ss_pred cCCceeeeEEChhhCCC-HHHHHHHHHHCCCEEEEe
Confidence 12233 456677778899996644
No 322
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=28.25 E-value=3.2e+02 Score=24.85 Aligned_cols=71 Identities=11% Similarity=0.033 Sum_probs=39.7
Q ss_pred CCCeEEEEE-ccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCccc
Q 013729 268 ILPRIGIIM-GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 343 (437)
Q Consensus 268 ~~~~V~ii~-gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 343 (437)
..++|++|- ++..+........+.++++|+..........-+.+...+.+. .++++.+..|...++...+.
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~-----~ad~I~~~GG~~~~~~~~l~ 99 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLL-----EADGIFVGGGNQLRLLSVLR 99 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHh-----hCCEEEEcCCcHHHHHHHHH
Confidence 346776774 343345667778889999999865443221112233444442 25666665555556666553
No 323
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=28.24 E-value=2.8e+02 Score=23.33 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=45.7
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCC
Q 013729 268 ILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 347 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 347 (437)
+..++ +|.|+. .....++..|...|++ .++++ -|++++..++.+.+. +..+....- ..+...+ ...
T Consensus 11 ~~~~v-lviGaG---g~ar~v~~~L~~~g~~-~i~i~--nRt~~ra~~l~~~~~--~~~~~~~~~---~~~~~~~--~~~ 76 (135)
T PF01488_consen 11 KGKRV-LVIGAG---GAARAVAAALAALGAK-EITIV--NRTPERAEALAEEFG--GVNIEAIPL---EDLEEAL--QEA 76 (135)
T ss_dssp TTSEE-EEESSS---HHHHHHHHHHHHTTSS-EEEEE--ESSHHHHHHHHHHHT--GCSEEEEEG---GGHCHHH--HTE
T ss_pred CCCEE-EEECCH---HHHHHHHHHHHHcCCC-EEEEE--ECCHHHHHHHHHHcC--ccccceeeH---HHHHHHH--hhC
Confidence 44566 666665 6788889999999998 44444 499999988887662 233333322 1222222 235
Q ss_pred CCEEeccCC
Q 013729 348 LPVIGVPVR 356 (437)
Q Consensus 348 ~pVi~~p~~ 356 (437)
.-||++++.
T Consensus 77 DivI~aT~~ 85 (135)
T PF01488_consen 77 DIVINATPS 85 (135)
T ss_dssp SEEEE-SST
T ss_pred CeEEEecCC
Confidence 677777654
No 324
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=28.22 E-value=3e+02 Score=26.95 Aligned_cols=37 Identities=5% Similarity=0.090 Sum_probs=23.2
Q ss_pred EecCCCChhHHHHhHhhhhhcCCeEEEEecccccccc
Q 013729 303 IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLP 339 (437)
Q Consensus 303 v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~ 339 (437)
++|..|....+.+.++.+++.|++++.......+.|+
T Consensus 100 ~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la 136 (326)
T PRK10892 100 AISNSGESSEILALIPVLKRLHVPLICITGRPESSMA 136 (326)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCccc
Confidence 3555666677777888888888876655443333333
No 325
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=28.19 E-value=1.3e+02 Score=21.94 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=22.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEec
Q 013729 278 SDSDLPVMKDAAKILTMFSVPHEVRIVS 305 (437)
Q Consensus 278 s~sD~~~~~~~~~~L~~~G~~~~~~v~s 305 (437)
+.+.-+.+..+.+.|+++|++++..-+.
T Consensus 7 s~~~Cp~C~~ak~~L~~~~i~~~~~~v~ 34 (72)
T cd03029 7 TKPGCPFCARAKAALQENGISYEEIPLG 34 (72)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 4567799999999999999998766443
No 326
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=28.16 E-value=2.7e+02 Score=27.07 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=14.8
Q ss_pred ecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 304 VSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 304 ~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
+|-.|...++.+.++.++++|++++..
T Consensus 96 iS~sG~t~~~~~~~~~ak~~g~~vI~i 122 (321)
T PRK11543 96 ISYSGGAKELDLIIPRLEDKSIALLAM 122 (321)
T ss_pred EeCCCCcHHHHHHHHHHHHcCCeEEEE
Confidence 344445555666666666666664433
No 327
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=28.05 E-value=5.7e+02 Score=24.92 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHH-HHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecc
Q 013729 281 DLPVMKDAAKIL-TMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG 333 (437)
Q Consensus 281 D~~~~~~~~~~L-~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag 333 (437)
.......++..+ ++.|++.-.++..-.++..++...+..+.+.|++=+.+..|
T Consensus 66 ~~~r~~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrG 119 (296)
T PRK09432 66 ERDRTHSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRG 119 (296)
T ss_pred HHHHHHHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 444555455555 77899988888777889999999988899999996666554
No 328
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=27.93 E-value=3.7e+02 Score=27.52 Aligned_cols=58 Identities=9% Similarity=0.033 Sum_probs=27.5
Q ss_pred EEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCc
Q 013729 240 TIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVP 298 (437)
Q Consensus 240 i~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~ 298 (437)
+|+...+.=+.+...+-...++...+....+++++|+|+.+....+-.++..| ..|..
T Consensus 11 i~~~~hp~gc~~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~ 68 (398)
T PRK13656 11 ICTTAHPVGCEANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGAD 68 (398)
T ss_pred eECCCCCHHHHHHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCe
Confidence 34444444444444444433322111113345556666666555555556666 66655
No 329
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=27.91 E-value=2.5e+02 Score=22.20 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCc--------eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 114 TDVAHKAVSSLEGA--------GIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 114 ~~~a~~i~~alg~~--------G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
++.|...++..||. +...||++..+++.+.|+||-.|.+.
T Consensus 3 E~~A~~~L~~~G~~IL~rN~r~~~GEIDiIa~~~~~lvfVEVK~R~~~ 50 (93)
T PF02021_consen 3 EELAARYLERKGYRILERNWRCRRGEIDIIARDGDTLVFVEVKTRSSS 50 (93)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEETTEEEEEEEEETTEEEEEEEEE----
T ss_pred HHHHHHHHHHCCCEEeeeeecCCCCcEeEEEEEcccEEEEEEEEeecc
Confidence 45677777777653 34679998877778999999999764
No 330
>PRK06139 short chain dehydrogenase; Provisional
Probab=27.83 E-value=2.1e+02 Score=28.18 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=48.3
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.|+++|.+-.=-..-+...+. ...+| ++. ..+.+.++++.+.++..|.++..-.+. -..++.+.++.
T Consensus 9 ~vlITGAs~GIG~aia~~la~---------~G~~V-vl~--~R~~~~l~~~~~~~~~~g~~~~~~~~D-v~d~~~v~~~~ 75 (330)
T PRK06139 9 VVVITGASSGIGQATAEAFAR---------RGARL-VLA--ARDEEALQAVAEECRALGAEVLVVPTD-VTDADQVKALA 75 (330)
T ss_pred EEEEcCCCCHHHHHHHHHHHH---------CCCEE-EEE--ECCHHHHHHHHHHHHhcCCcEEEEEee-CCCHHHHHHHH
Confidence 567777765544444444443 22345 333 345677778877888777664322222 34566677766
Q ss_pred hhhhh--cCCeEEEEeccc
Q 013729 318 SSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~--~g~~v~i~~ag~ 334 (437)
++..+ .+++++|-++|.
T Consensus 76 ~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 76 TQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHhcCCCCEEEECCCc
Confidence 54433 357788888864
No 331
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=27.78 E-value=2.5e+02 Score=27.77 Aligned_cols=84 Identities=19% Similarity=0.165 Sum_probs=53.5
Q ss_pred CCeEEEEEccCC--CHHHHHHHHHHHHHcCCcEEEEEecC------CCCh-hHHHHhHhhhhhcCCeEEEEeccc--ccc
Q 013729 269 LPRIGIIMGSDS--DLPVMKDAAKILTMFSVPHEVRIVSA------HRTP-DLMFSYASSAHERGIEIIIAGAGG--AAH 337 (437)
Q Consensus 269 ~~~V~ii~gs~s--D~~~~~~~~~~L~~~G~~~~~~v~s~------hr~p-~~~~~~~~~~~~~g~~v~i~~ag~--~~~ 337 (437)
...+.||+-|.+ +...++.+.+.|+.+|+++...-... -+++ +|...+..-+.+..++++.+.-|| ++.
T Consensus 10 gd~I~iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs~r 89 (313)
T COG1619 10 GDEIGIIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGSNR 89 (313)
T ss_pred CCEEEEEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCChhh
Confidence 346777765433 46778888899999998865432111 1233 556666666678888888887775 455
Q ss_pred ccCcccCC----CCCCEEe
Q 013729 338 LPGMVAAR----TPLPVIG 352 (437)
Q Consensus 338 l~~~i~~~----~~~pVi~ 352 (437)
|...+-.. ..++.||
T Consensus 90 lLp~ld~~~i~~~pKifiG 108 (313)
T COG1619 90 LLPYLDYDLIRNHPKIFIG 108 (313)
T ss_pred hhhhcchHHHhcCCceEEE
Confidence 65555432 5666666
No 332
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.60 E-value=1.8e+02 Score=28.78 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=47.1
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCc-----EEEEEecCCCChhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVP-----HEVRIVSAHRTPDL 312 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~-----~~~~v~s~hr~p~~ 312 (437)
.++++|.|..-=++-++..+.. ...| ++. ..|.+..+++.+.+.+-.-+ +.+...| ++.
T Consensus 37 ~~vVTGansGIG~eta~~La~~---------Ga~V-v~~--~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLss----l~S 100 (314)
T KOG1208|consen 37 VALVTGATSGIGFETARELALR---------GAHV-VLA--CRNEERGEEAKEQIQKGKANQKIRVIQLDLSS----LKS 100 (314)
T ss_pred EEEEECCCCchHHHHHHHHHhC---------CCEE-EEE--eCCHHHHHHHHHHHHhcCCCCceEEEECCCCC----HHH
Confidence 5677787766555555544432 2344 333 34667888888887761111 2333333 444
Q ss_pred HHHhHhhhh--hcCCeEEEEecccc
Q 013729 313 MFSYASSAH--ERGIEIIIAGAGGA 335 (437)
Q Consensus 313 ~~~~~~~~~--~~g~~v~i~~ag~~ 335 (437)
+.+|...++ ....+|.|-.||..
T Consensus 101 V~~fa~~~~~~~~~ldvLInNAGV~ 125 (314)
T KOG1208|consen 101 VRKFAEEFKKKEGPLDVLINNAGVM 125 (314)
T ss_pred HHHHHHHHHhcCCCccEEEeCcccc
Confidence 677766554 55677888888743
No 333
>PRK11175 universal stress protein UspE; Provisional
Probab=27.42 E-value=2e+02 Score=27.64 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCc--------ccCCCCCCEEeccC
Q 013729 286 KDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGM--------VAARTPLPVIGVPV 355 (437)
Q Consensus 286 ~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~--------i~~~~~~pVi~~p~ 355 (437)
+++.+.+...|++++..+.- ++.|. ..+++.+++++++.+|.++-+...+.+. +..+...||+-+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~-~g~~~--~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~ 146 (305)
T PRK11175 72 REQAKPYLDAGIPIEIKVVW-HNRPF--EAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKD 146 (305)
T ss_pred HHHHHHHhhcCCceEEEEec-CCCcH--HHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEecc
Confidence 33344444556665554431 34332 2333334556666666655333233322 22345667776665
No 334
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=27.34 E-value=3.1e+02 Score=25.25 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEeccc
Q 013729 282 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 282 ~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
.+...+....++..+..+....+. -.+++.+.+++....+ ..++++|-.+|.
T Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 43 AERAELAVAKLRQEGIKAHAAPFN-VTHKQEVEAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecC-CCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 344555555555544433222111 2345555555443322 235666665553
No 335
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=27.20 E-value=41 Score=22.29 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=16.9
Q ss_pred HHHHHHHccCChHHHHHHHHH
Q 013729 391 LLAVRMLGFGDADLRARMQQY 411 (437)
Q Consensus 391 ~~a~~~l~~~~~~~~~~~~~~ 411 (437)
..|++.|+++-.-|+.||+.|
T Consensus 22 ~~aA~~Lgisr~tL~~klkk~ 42 (42)
T PF02954_consen 22 SKAARLLGISRRTLYRKLKKY 42 (42)
T ss_dssp HHHHHHHTS-HHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHhC
Confidence 468889999999999998864
No 336
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=26.93 E-value=3.6e+02 Score=25.98 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHc-CCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 281 DLPVMKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 281 D~~~~~~~~~~L~~~-G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
|...+.++.+.+++. ++++.+.+. + +.+++.++.+.+++.|++.+++
T Consensus 138 ~~~~~~eiv~~vr~~~~~Pv~vKl~-~--~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 138 DPEAVAEIVKAVKKATDVPVIVKLT-P--NVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeC-C--CchhHHHHHHHHHHcCCCEEEE
Confidence 445666666666654 677776642 2 1223555555556667775544
No 337
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=26.86 E-value=2.9e+02 Score=26.84 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHh
Q 013729 386 ATNAGLLAVRMLGFGDADLRARMQQYMEDM 415 (437)
Q Consensus 386 ~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~ 415 (437)
..++|+.|+.|++--.|-=++++.+|..+.
T Consensus 192 ~~g~AiRaAliFggv~pGn~~ei~dY~~nR 221 (287)
T cd01917 192 AANYALRAGLMFGGIEPGKREEIRDYQRRR 221 (287)
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHHhh
Confidence 678999999999998888899999998765
No 338
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=26.84 E-value=2.1e+02 Score=26.30 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=22.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 278 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 278 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
+..|.+...+..+.+-..|++.- +++ .-.++.+..+++++.+.|++|+..
T Consensus 37 ~~~d~~~q~~~i~~~i~~~~d~I--iv~-~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 37 AQNDPEEQIEQIEQAISQGVDGI--IVS-PVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp STTTHHHHHHHHHHHHHTTESEE--EEE-SSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCEE--Eec-CCCHHHHHHHHHHHhhcCceEEEE
Confidence 34444444555555555553311 111 222333444555555555555554
No 339
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=26.81 E-value=1.9e+02 Score=28.34 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=50.4
Q ss_pred EccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec--cccccccCcccCCCCCCEEec
Q 013729 276 MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGV 353 (437)
Q Consensus 276 ~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVi~~ 353 (437)
+|-..-.....++.+.|+..|+.+..++....+ ...++++++...+++.+|+.. |.-+.....+++.-..| +++
T Consensus 13 sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g---~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~-Lgi 88 (301)
T COG1597 13 SGKGKAKKLLREVEELLEEAGHELSVRVTEEAG---DAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP-LGI 88 (301)
T ss_pred ccccchhhHHHHHHHHHHhcCCeEEEEEeecCc---cHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc-eEE
Confidence 333345677888899999999998888766443 366777777777888777754 22334444444444444 554
Q ss_pred -cCCC
Q 013729 354 -PVRA 357 (437)
Q Consensus 354 -p~~~ 357 (437)
|..+
T Consensus 89 lP~GT 93 (301)
T COG1597 89 LPGGT 93 (301)
T ss_pred ecCCc
Confidence 6543
No 340
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=26.75 E-value=3.2e+02 Score=25.22 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=43.0
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.|+.+|.+-.-..+-+++.++ ....| ++. +.+.+...+..+.++..|.++....+. -..++.+.+++
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~i~~~~~~~~~~~~D-~~~~~~~~~~~ 78 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQ---------AGAEV-ILN--GRDPAKLAAAAESLKGQGLSAHALAFD-VTDHDAVRAAI 78 (255)
T ss_pred EEEEECCcchHHHHHHHHHHH---------cCCEE-EEE--eCCHHHHHHHHHHHHhcCceEEEEEcc-CCCHHHHHHHH
Confidence 466777665555554444443 12244 333 334455556666666666554333222 34455566665
Q ss_pred hhhhh--cCCeEEEEeccc
Q 013729 318 SSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~--~g~~v~i~~ag~ 334 (437)
++..+ ..++++|-.+|.
T Consensus 79 ~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 79 DAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 44332 246677777754
No 341
>PRK13936 phosphoheptose isomerase; Provisional
Probab=26.58 E-value=4.8e+02 Score=23.56 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=24.9
Q ss_pred cCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC
Q 013729 305 SAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 356 (437)
Q Consensus 305 s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~ 356 (437)
|-.+....+.+.++.++++|++++.......+.|..+. .....++.+|..
T Consensus 119 S~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~--~~ad~~l~v~~~ 168 (197)
T PRK13936 119 STSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLL--LPEDVEIRVPAE 168 (197)
T ss_pred eCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhh--ccCCEEEEeCCC
Confidence 33444444666666777777775544332222333321 123456666653
No 342
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=26.54 E-value=2.2e+02 Score=27.88 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=37.9
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCC-----ChhHHHHhHhhhhhcCCeEEEEeccccccccCcccC-CCC
Q 013729 274 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR-----TPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA-RTP 347 (437)
Q Consensus 274 ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr-----~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~-~~~ 347 (437)
+++|...|..........+...+++++..+.+... +...+.++.+.+++...+++.+.......+++.+++ ...
T Consensus 33 ~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~ 112 (363)
T cd03786 33 VVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLG 112 (363)
T ss_pred EEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcC
Confidence 56666555555444444432334445555433211 111122223333445566666653233345444433 356
Q ss_pred CCEEecc
Q 013729 348 LPVIGVP 354 (437)
Q Consensus 348 ~pVi~~p 354 (437)
.||+.+.
T Consensus 113 iPvv~~~ 119 (363)
T cd03786 113 IPVAHVE 119 (363)
T ss_pred CCEEEEe
Confidence 6887654
No 343
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.53 E-value=3.5e+02 Score=22.10 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=22.2
Q ss_pred EEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 301 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 301 ~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+-++|-.+...++.+.++.++++|++++....
T Consensus 51 ~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~ 82 (120)
T cd05710 51 VILASHSGNTKETVAAAKFAKEKGATVIGLTD 82 (120)
T ss_pred EEEEeCCCCChHHHHHHHHHHHcCCeEEEEEC
Confidence 34456677777788888888888887665444
No 344
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=26.46 E-value=1.3e+02 Score=28.26 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=43.8
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEe------CCHHHHHHHHHHh-----cCCCCcEEEeeccCC-CeEEEEEEEE
Q 013729 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITAL-----GGFDRGLYVEKWAPF-VKELAVIVVR 75 (437)
Q Consensus 8 e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v------~~~~el~~~~~~~-----~~~~~~~lvEe~I~g-~~E~sv~~~~ 75 (437)
.+++.++++|.+-.+|-+ ||+|+.++ .+.++.+.+.+.+ ...++.+..+..... +.-+-++..+
T Consensus 123 ~vr~~L~~lgL~sf~KTS----G~kGlHv~vPl~~~~~~~~~r~fa~~iA~~l~~~~P~~~t~~~~k~~R~grvfiDylq 198 (228)
T cd04865 123 LVREVLDELGLRGYPKTS----GARGLHIYVPIAPRYTFEEVRRFAELLAREVERRLPDLATTERWKKERGGRVYLDYLQ 198 (228)
T ss_pred HHHHHHHHcCCccceEcc----CCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCchhhhhHhhHHhCCCCEEEECcc
Confidence 456677889999999993 68999875 4556666554432 133444455544442 1345666666
Q ss_pred cCCCceEE
Q 013729 76 GRDKSILC 83 (437)
Q Consensus 76 d~~G~~~~ 83 (437)
+..|....
T Consensus 199 N~~g~T~v 206 (228)
T cd04865 199 NARGKTLA 206 (228)
T ss_pred CCCCCeEE
Confidence 66665443
No 345
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=26.35 E-value=2.3e+02 Score=26.30 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=22.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEe
Q 013729 278 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 278 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
+..|.....+..+.+...++. .-++.... +....+.+..+.+.|++++...
T Consensus 42 ~~~~~~~~~~~~~~~~~~~vd--giIi~~~~-~~~~~~~l~~~~~~~iPvv~~~ 92 (272)
T cd06300 42 ADGDVAQQIADIRNLIAQGVD--AIIINPAS-PTALNPVIEEACEAGIPVVSFD 92 (272)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEeCCC-hhhhHHHHHHHHHCCCeEEEEe
Confidence 444555555555555555433 32322221 1112233444455667666554
No 346
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=26.15 E-value=2.7e+02 Score=25.39 Aligned_cols=60 Identities=15% Similarity=0.010 Sum_probs=38.3
Q ss_pred CeEEEEEccCC------CHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecc
Q 013729 270 PRIGIIMGSDS------DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG 333 (437)
Q Consensus 270 ~~V~ii~gs~s------D~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag 333 (437)
..|.|+..... -.+.+.++...|+..|+.+++..-+ +.+| -.=++.++..|+++.|.+..
T Consensus 11 ~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~-~~s~---g~K~~~ae~~GvP~~I~IG~ 76 (202)
T cd00862 11 IQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRD-NYTP---GWKFNDWELKGVPLRIEIGP 76 (202)
T ss_pred ceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCC-CCCH---hHHHHHHHhCCCCEEEEECc
Confidence 45656654444 2467888888899999998887322 2233 33344557889997776643
No 347
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.01 E-value=2.8e+02 Score=20.60 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=25.1
Q ss_pred cCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 295 FSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 295 ~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
++=+--+-++|..|...++.+.++.++++|++++..
T Consensus 45 ~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~i 80 (87)
T cd04795 45 LRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAI 80 (87)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEE
Confidence 333334455566777777888999999999986543
No 348
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=25.91 E-value=2.9e+02 Score=27.11 Aligned_cols=97 Identities=20% Similarity=0.136 Sum_probs=56.2
Q ss_pred eEEEEEccC-C-CHHHHHHHHHHHHHcCCcEEEEEec------CCCChhHHHHhHhhh---hhcCCeEEEEecccc--cc
Q 013729 271 RIGIIMGSD-S-DLPVMKDAAKILTMFSVPHEVRIVS------AHRTPDLMFSYASSA---HERGIEIIIAGAGGA--AH 337 (437)
Q Consensus 271 ~V~ii~gs~-s-D~~~~~~~~~~L~~~G~~~~~~v~s------~hr~p~~~~~~~~~~---~~~g~~v~i~~ag~~--~~ 337 (437)
+|+||+-|. . +.+.++...+.|+++|+++...-.. .-.++++-++-+.++ .+. ++.+++..||. +.
T Consensus 3 ~I~viAPSs~~~~~~~~~~~i~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i~aI~~~rGGyg~~r 81 (305)
T PRK11253 3 LFHLIAPSGYPIDQAAALRGVQRLTDAGHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTP-NTIVLAVRGGYGASR 81 (305)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHhCCCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCC-ccEEEEecccCCHhH
Confidence 567787664 2 6677888899999999986433210 123444444444433 555 88888877764 45
Q ss_pred ccCcc-----cC---CCCCCEEeccCCCCCCCChhhHHHhhhCCCC
Q 013729 338 LPGMV-----AA---RTPLPVIGVPVRASALDGLDSLLSIVQMPRG 375 (437)
Q Consensus 338 l~~~i-----~~---~~~~pVi~~p~~~~~~~g~~~l~~~~~~~~g 375 (437)
|.+.+ +. ...+++||- ....+|+..+.--.|
T Consensus 82 lLp~Ld~~~i~~~~k~~PK~~iGy-------SDiTaL~~al~~~~g 120 (305)
T PRK11253 82 LLAGIDWQGLAARQQDDPLLIVGH-------SDFTAIQLALLAQAN 120 (305)
T ss_pred hhhhCCHHHHhhhhccCCCEEEEE-------cHHHHHHHHHHHhcC
Confidence 55554 21 124466662 234555555544555
No 349
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=25.76 E-value=3.4e+02 Score=21.53 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=22.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEec
Q 013729 278 SDSDLPVMKDAAKILTMFSVPHEVRIVS 305 (437)
Q Consensus 278 s~sD~~~~~~~~~~L~~~G~~~~~~v~s 305 (437)
|.+.-+.+..+.+.|+++|++++..-+.
T Consensus 14 sk~~Cp~C~~ak~~L~~~~i~~~~vdid 41 (99)
T TIGR02189 14 SRSSCCMCHVVKRLLLTLGVNPAVHEID 41 (99)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEEcC
Confidence 4567899999999999999998755443
No 350
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=25.71 E-value=2.7e+02 Score=26.69 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=42.9
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCc---EEEEEecCCCChhHHHH
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVP---HEVRIVSAHRTPDLMFS 315 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~---~~~~v~s~hr~p~~~~~ 315 (437)
++.+|.+..--.+.+.+.++ ...+| ++++ ++.+..++....+...|.. +...++ -++..+...+
T Consensus 11 alVTG~s~GIG~aia~~la~---------~Ga~v-~i~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dv~~~~~~~~ 77 (270)
T KOG0725|consen 11 ALVTGGSSGIGKAIALLLAK---------AGAKV-VITG--RSEERLEETAQELGGLGYTGGKVLAIVC-DVSKEVDVEK 77 (270)
T ss_pred EEEECCCChHHHHHHHHHHH---------CCCEE-EEEe--CCHHHHHHHHHHHHhcCCCCCeeEEEEC-cCCCHHHHHH
Confidence 34556555555444444443 22345 4443 3456666777676766664 333322 2444544555
Q ss_pred hHhhh-hh--cCCeEEEEecccc
Q 013729 316 YASSA-HE--RGIEIIIAGAGGA 335 (437)
Q Consensus 316 ~~~~~-~~--~g~~v~i~~ag~~ 335 (437)
+.... ++ ..+++++-.+|..
T Consensus 78 l~~~~~~~~~GkidiLvnnag~~ 100 (270)
T KOG0725|consen 78 LVEFAVEKFFGKIDILVNNAGAL 100 (270)
T ss_pred HHHHHHHHhCCCCCEEEEcCCcC
Confidence 44322 32 2377888777644
No 351
>PRK13059 putative lipid kinase; Reviewed
Probab=25.70 E-value=1.5e+02 Score=28.68 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=39.9
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCC----CCCCEEe
Q 013729 277 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR----TPLPVIG 352 (437)
Q Consensus 277 gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~----~~~pVi~ 352 (437)
|+.+......++.+.|.+.|+++......-+...+ ...++.+.+.+++|+ +||.+-+-.++.+. ...|+--
T Consensus 13 G~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~d~vi~-~GGDGTv~evv~gl~~~~~~~~lgv 87 (295)
T PRK13059 13 GENAIISELDKVIRIHQEKGYLVVPYRISLEYDLK----NAFKDIDESYKYILI-AGGDGTVDNVVNAMKKLNIDLPIGI 87 (295)
T ss_pred cchhHHHHHHHHHHHHHHCCcEEEEEEccCcchHH----HHHHHhhcCCCEEEE-ECCccHHHHHHHHHHhcCCCCcEEE
Confidence 33333455677888899999886643322222222 223334456675554 45665544444332 2345555
Q ss_pred ccCCC
Q 013729 353 VPVRA 357 (437)
Q Consensus 353 ~p~~~ 357 (437)
+|..+
T Consensus 88 iP~GT 92 (295)
T PRK13059 88 LPVGT 92 (295)
T ss_pred ECCCC
Confidence 57653
No 352
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=25.51 E-value=1.5e+02 Score=26.61 Aligned_cols=16 Identities=19% Similarity=0.011 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHcCCc
Q 013729 283 PVMKDAAKILTMFSVP 298 (437)
Q Consensus 283 ~~~~~~~~~L~~~G~~ 298 (437)
....++...+...++.
T Consensus 45 ~~~~~~~~~~~~~~~d 60 (269)
T cd01391 45 ERALEALRDLIQQGVD 60 (269)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3444444444444433
No 353
>PLN02530 histidine-tRNA ligase
Probab=25.38 E-value=3e+02 Score=28.92 Aligned_cols=58 Identities=7% Similarity=-0.069 Sum_probs=39.9
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
..|.|+..+......+.+++..|++.|+.+++...+ +. +.+-++.+...|++.++.+.
T Consensus 402 ~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~--~~---l~k~ik~A~k~g~~~iviiG 459 (487)
T PLN02530 402 VDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEP--KK---LKWVFKHAERIGAKRLVLVG 459 (487)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCC--CC---HHHHHHHHHHCCCCEEEEEc
Confidence 346566556666778999999999999999887432 32 44555556778888555443
No 354
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=25.37 E-value=49 Score=33.17 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=15.4
Q ss_pred hhHHHhhhCCCCCceE-EEEeCCcchHHHHHHH
Q 013729 364 DSLLSIVQMPRGVPVA-TVAINNATNAGLLAVR 395 (437)
Q Consensus 364 ~~l~~~~~~~~gvp~~-tv~~~~~~~aa~~a~~ 395 (437)
|.|-.+......+=+. .+ +..|+-+|+.
T Consensus 153 d~l~dtassh~r~~iveVM----GR~aG~lAl~ 181 (347)
T COG0205 153 DNLRDTASSHERIFIVEVM----GRHAGWLALA 181 (347)
T ss_pred HHHHHHHhCcCCEEEEEec----CcChhHHHHH
Confidence 4455556667775555 33 5555555543
No 355
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.36 E-value=1.6e+02 Score=27.43 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=7.6
Q ss_pred HhHhhhhhcCCeEEEE
Q 013729 315 SYASSAHERGIEIIIA 330 (437)
Q Consensus 315 ~~~~~~~~~g~~v~i~ 330 (437)
+.+..+.+.|++++..
T Consensus 73 ~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 73 PPLKEAKDAGIPVVLI 88 (273)
T ss_pred HHHHHHHHCCCCEEEe
Confidence 3344444555665544
No 356
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=25.23 E-value=1.6e+02 Score=27.44 Aligned_cols=48 Identities=13% Similarity=0.040 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 280 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
.|...-.++.+.|...++. .-++.... +..+.+.++.+.+.|++|+..
T Consensus 41 ~~~~~~~~~i~~l~~~~vd--giIi~~~~-~~~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 41 GDQQGQLSIAENMINKGYK--GLLFSPIS-DVNLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred CCHHHHHHHHHHHHHhCCC--EEEECCCC-hHHhHHHHHHHHHCCCeEEEE
Confidence 3444444555555555543 22333221 112223344445566766644
No 357
>PRK12463 chorismate synthase; Reviewed
Probab=25.10 E-value=2.2e+02 Score=28.99 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=38.7
Q ss_pred hHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC--CCC-CC-ChhhHHHhhhCCCCCc-eEEEEeCC
Q 013729 311 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASA-LD-GLDSLLSIVQMPRGVP-VATVAINN 385 (437)
Q Consensus 311 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~--~~~-~~-g~~~l~~~~~~~~gvp-~~tv~~~~ 385 (437)
+++.+++.++++.|- .|.|++ ..-+.|||+. +.. +| .+|+.|+.+-|. || |=-|.|+.
T Consensus 200 ~~m~~~I~~ak~~gD-----------SlGGiv----ev~~~gvP~GLGspv~fd~kLda~LA~A~ms--IpAVKgVE~G~ 262 (390)
T PRK12463 200 QEMMDAIDNAKSSGD-----------SIGGIV----EVIAEGMPIGVGSYVHYDRKLDAKLAGAIMS--INAFKGAEIGV 262 (390)
T ss_pred HHHHHHHHHHHHhCC-----------CCceEE----EEEEECCCCCCCCCccccccchHHHHHHhcC--cCceeEEEEcc
Confidence 345556666666442 344443 4456678875 222 56 899888877773 34 44888887
Q ss_pred cchHHH
Q 013729 386 ATNAGL 391 (437)
Q Consensus 386 ~~~aa~ 391 (437)
++.+|-
T Consensus 263 Gf~~a~ 268 (390)
T PRK12463 263 GFEAAR 268 (390)
T ss_pred chhhhh
Confidence 766543
No 358
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=25.09 E-value=4.1e+02 Score=25.69 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHH-HcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccc
Q 013729 280 SDLPVMKDAAKILT-MFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG 334 (437)
Q Consensus 280 sD~~~~~~~~~~L~-~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~ 334 (437)
++...-..++..|+ +.|++.-.+++.-.++...+.+++..+.+.|++=+.+..|-
T Consensus 42 ~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD 97 (281)
T TIGR00677 42 TTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGD 97 (281)
T ss_pred cchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 45555566666676 67999888887888888899999988889999955555543
No 359
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=25.04 E-value=4.5e+02 Score=24.21 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecC-CCChhHHHHhHhhhhhcCCeEE
Q 013729 282 LPVMKDAAKILTMFSVPHEVRIVSA-HRTPDLMFSYASSAHERGIEII 328 (437)
Q Consensus 282 ~~~~~~~~~~L~~~G~~~~~~v~s~-hr~p~~~~~~~~~~~~~g~~v~ 328 (437)
.+.+.++.+..+++|+.+......+ .-+|+.+.++.+.+.+-|++.+
T Consensus 107 ~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 154 (237)
T PF00682_consen 107 LERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADII 154 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEE
Confidence 6677777777788888776665333 3346777777777777677744
No 360
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=25.02 E-value=1.7e+02 Score=23.81 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEE
Q 013729 279 DSDLPVMKDAAKILTMFSVPHEVR 302 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~~~~ 302 (437)
++|..........|+++|..+++.
T Consensus 6 ddd~~R~~~L~~ILeFlGe~~~~~ 29 (109)
T PF06490_consen 6 DDDAERRQRLSTILEFLGEQCEAV 29 (109)
T ss_pred CCcHHHHHhhhhhhhhcCCCeEEe
Confidence 678899999999999999997766
No 361
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=24.98 E-value=4.2e+02 Score=22.32 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=55.3
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++.+|.+..=..+-++..+.. ...+.++.+...+.+...+....|+..|..+..--+. -.+++.+.+++
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~---------g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D-~~~~~~~~~~~ 71 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARR---------GARVVILTSRSEDSEGAQELIQELKAPGAKITFIECD-LSDPESIRALI 71 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT---------TTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESE-TTSHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhc---------CceEEEEeeeccccccccccccccccccccccccccc-ccccccccccc
Confidence 4677787776666666655542 2333244433335788888888888888665544433 45677777777
Q ss_pred hhhh--hcCCeEEEEecccc
Q 013729 318 SSAH--ERGIEIIIAGAGGA 335 (437)
Q Consensus 318 ~~~~--~~g~~v~i~~ag~~ 335 (437)
++.. ...++++|.++|..
T Consensus 72 ~~~~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 72 EEVIKRFGPLDILINNAGIF 91 (167)
T ss_dssp HHHHHHHSSESEEEEECSCT
T ss_pred cccccccccccccccccccc
Confidence 6655 33466788777654
No 362
>PRK09019 translation initiation factor Sui1; Validated
Probab=24.97 E-value=3.6e+02 Score=22.20 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=29.8
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHH-cCCc--E---EEEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTM-FSVP--H---EVRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~-~G~~--~---~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
.|-+|.|=+.+...+.++++.|+. +|.- + +..+=+-|| +++.+|+ .+.|+++-.+
T Consensus 46 ~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~~~IelQGD~r--~~v~~~L---~~~Gf~~k~~ 106 (108)
T PRK09019 46 GVCLITGLDLDDAELKKLAAELKKKCGCGGAVKDGVIEIQGDKR--DLLKSLL---EAKGMKVKLA 106 (108)
T ss_pred eEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEcCEEEEcCcHH--HHHHHHH---HHCCCeEEec
Confidence 455566555455566666666653 4433 1 122225565 5566666 5567776643
No 363
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=24.84 E-value=5.3e+02 Score=23.78 Aligned_cols=80 Identities=18% Similarity=0.302 Sum_probs=47.1
Q ss_pred cCCHHHHHHHHHHhhcc-CCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCC-------------
Q 013729 243 GSSMGLVESRLNSLLKE-DSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR------------- 308 (437)
Q Consensus 243 G~s~~eA~~k~~~a~~~-i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr------------- 308 (437)
|.+.+..++.++.+.+. .+. .-++.+|-|-..+.+.++.+++.+..++.. ...+..-|.
T Consensus 110 G~~~~~il~nl~~l~~~g~~v------~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~-~~~llpyh~~g~~Ky~~lg~~y 182 (213)
T PRK10076 110 KMNLPRVLENLRLLVSEGVNV------IPRLPLIPGFTLSRENMQQALDVLIPLGIK-QIHLLPFHQYGEPKYRLLGKTW 182 (213)
T ss_pred CCCHHHHHHHHHHHHhCCCcE------EEEEEEECCCCCCHHHHHHHHHHHHHcCCc-eEEEecCCccchhHHHHcCCcC
Confidence 45566666666655543 221 123335555445678889999999888765 444444454
Q ss_pred --------ChhHHHHhHhhhhhcCCeEEE
Q 013729 309 --------TPDLMFSYASSAHERGIEIII 329 (437)
Q Consensus 309 --------~p~~~~~~~~~~~~~g~~v~i 329 (437)
+++.+.++.+-+++.|+++.|
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 183 SMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 234444555556777888765
No 364
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=24.79 E-value=5.7e+02 Score=26.90 Aligned_cols=99 Identities=11% Similarity=-0.025 Sum_probs=54.6
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEE----ccCCCHHHHH-HHHHHHHHcCCcEEEEEecCCCChhHH
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIM----GSDSDLPVMK-DAAKILTMFSVPHEVRIVSAHRTPDLM 313 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~----gs~sD~~~~~-~~~~~L~~~G~~~~~~v~s~hr~p~~~ 313 (437)
+...-.+.+++..=.+...+.+..+. +..++.||. |..+...... .+...|+..|+++++......+ ..
T Consensus 84 ~~~~~~~~~~~~~w~~~~~~~~~~~~---~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~g---hA 157 (481)
T PLN02958 84 FVFEPLSDESRRLWCQKLRDYLDSLG---RPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQL---HA 157 (481)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcc---CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCcc---HH
Confidence 44455666666666665555554321 234554553 3333344444 4566899999998876544333 34
Q ss_pred HHhHhhhhhcCCeEEEEeccccccccCcccC
Q 013729 314 FSYASSAHERGIEIIIAGAGGAAHLPGMVAA 344 (437)
Q Consensus 314 ~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 344 (437)
.++.+++...+.+.+|++ ||.+-+-.++.|
T Consensus 158 ~~la~~~~~~~~D~VV~v-GGDGTlnEVvNG 187 (481)
T PLN02958 158 KEVVRTMDLSKYDGIVCV-SGDGILVEVVNG 187 (481)
T ss_pred HHHHHHhhhcCCCEEEEE-cCCCHHHHHHHH
Confidence 556655555677766654 555544444443
No 365
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.71 E-value=2e+02 Score=26.66 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=8.2
Q ss_pred HHhHhhhhhcCCeEEEE
Q 013729 314 FSYASSAHERGIEIIIA 330 (437)
Q Consensus 314 ~~~~~~~~~~g~~v~i~ 330 (437)
.+.++.+.+.|++|+..
T Consensus 72 ~~~i~~~~~~~ipvv~~ 88 (271)
T cd06321 72 APAVKRAQAAGIVVVAV 88 (271)
T ss_pred HHHHHHHHHCCCeEEEe
Confidence 33444444555655554
No 366
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=24.63 E-value=4.5e+02 Score=24.92 Aligned_cols=31 Identities=23% Similarity=0.113 Sum_probs=20.6
Q ss_pred CCCeEEEEEc-cCCCHHHHHHHHHHHHHcCCc
Q 013729 268 ILPRIGIIMG-SDSDLPVMKDAAKILTMFSVP 298 (437)
Q Consensus 268 ~~~~V~ii~g-s~sD~~~~~~~~~~L~~~G~~ 298 (437)
..++|+||-. |.......+.....|+.+|+.
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~ 58 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVK 58 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCc
Confidence 3467777754 433345566777888999996
No 367
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=24.61 E-value=1.4e+02 Score=31.13 Aligned_cols=62 Identities=16% Similarity=0.085 Sum_probs=31.0
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcC--CeEEEEecccccccc
Q 013729 277 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERG--IEIIIAGAGGAAHLP 339 (437)
Q Consensus 277 gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g--~~v~i~~ag~~~~l~ 339 (437)
|+.......+++.+.|+++|+++-..+ +--+|-.-..++.++.+++| +.|+-+.+-..|+++
T Consensus 153 GTsR~~~~~~~iv~~L~~~~I~~L~vI-GGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~ 216 (443)
T PRK06830 153 GSSRGPQDPEEIVDTLERMNINILFVI-GGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDIN 216 (443)
T ss_pred cCCCCchhHHHHHHHHHHcCCCEEEEe-CCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCc
Confidence 444455567777777777777754443 33444333333333334444 334444444444443
No 368
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=24.58 E-value=2.5e+02 Score=27.14 Aligned_cols=61 Identities=16% Similarity=0.078 Sum_probs=42.2
Q ss_pred CCCeEEEEEccCCCH-HHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 268 ILPRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~-~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+...|.|.+.+.+.+ ....+++..|...||..|...- +.-++|++..+. +..|+..+|.++
T Consensus 4 ~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~-~~~S~Eel~~~~---~~~gi~wiViik 65 (273)
T PF12745_consen 4 SRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYD-ASPSQEELQSYC---REDGISWIVIIK 65 (273)
T ss_pred CcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccc-cCCCHHHHHHHH---HHCCCCEEEEEe
Confidence 445676677666666 7788899999999999887421 123666666555 778999655554
No 369
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=24.47 E-value=6.4e+02 Score=24.27 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=37.5
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
..++++....++ ......+.+.+++.|+.+... ....+++...++++.+..++++.+|...
T Consensus 65 ~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 128 (342)
T PRK10014 65 GVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLL--QGGKDGEQLAQRFSTLLNQGVDGVVIAG 128 (342)
T ss_pred CEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEE--eCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 457777643222 223344566778888765433 4456677667777777777888666654
No 370
>PRK14689 hypothetical protein; Provisional
Probab=24.43 E-value=4.3e+02 Score=22.28 Aligned_cols=74 Identities=14% Similarity=-0.005 Sum_probs=41.4
Q ss_pred EEEeeccCCCeEEEEEEEEcCCCceEEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEE
Q 013729 57 LYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELF 135 (437)
Q Consensus 57 ~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~ 135 (437)
++-..|=...-|+.+.+. +|.++.+ +|-..+.+......+...+++..+++|...|...+..-+....+.++|.
T Consensus 29 Il~rN~r~~~GEIDIIa~---~~~~lVF--VEVKtR~~~~~~~~~~eaV~~~Kqrri~raA~~yL~~~~~~~~~rfdv~ 102 (124)
T PRK14689 29 LLDRNWSCRWGELDLVLE---KQQRLLV--VEVKGRRRRGLDGWGLAAFHPRKRRRLARAINCWRAAHPYSAEHLLEVV 102 (124)
T ss_pred EEEEecCCCCCcccEEee---eCCEEEE--EEEEECCCCCCCCChhHcCCHHHHHHHHHHHHHHHHhCCCCCCeeEEEE
Confidence 444455443357777654 2334333 2333333221000112348999999999999998877665556666654
No 371
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=24.36 E-value=4.7e+02 Score=23.13 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=36.0
Q ss_pred CCCeEEEEEccCCCHHH-HHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc
Q 013729 268 ILPRIGIIMGSDSDLPV-MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 335 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~-~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~ 335 (437)
...++ +|.|.. +. ...+++.|.+.|..+.+. +|+.+++.+.++ .++++|.+.+..
T Consensus 43 ~gk~v-lViG~G---~~~G~~~a~~L~~~g~~V~v~----~r~~~~l~~~l~-----~aDiVIsat~~~ 98 (168)
T cd01080 43 AGKKV-VVVGRS---NIVGKPLAALLLNRNATVTVC----HSKTKNLKEHTK-----QADIVIVAVGKP 98 (168)
T ss_pred CCCEE-EEECCc---HHHHHHHHHHHhhCCCEEEEE----ECCchhHHHHHh-----hCCEEEEcCCCC
Confidence 34566 555553 33 445889999999864444 788777777764 367888777543
No 372
>PRK07478 short chain dehydrogenase; Provisional
Probab=24.33 E-value=2.9e+02 Score=25.43 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=44.7
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++.+|.+..=-..-++..++ ...+| ++.+ .+.+.+.++.+.++..|.++....+. -..++.+.+.+
T Consensus 8 ~~lItGas~giG~~ia~~l~~---------~G~~v-~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~ 74 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAR---------EGAKV-VVGA--RRQAELDQLVAEIRAEGGEAVALAGD-VRDEAYAKALV 74 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHH---------CCCEE-EEEe--CCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHH
Confidence 466666665433333333332 22245 3332 33456677777777777554333222 34566666666
Q ss_pred hhhhh--cCCeEEEEeccc
Q 013729 318 SSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~--~g~~v~i~~ag~ 334 (437)
++..+ ..++++|-.+|.
T Consensus 75 ~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 75 ALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 54433 257788888764
No 373
>PTZ00445 p36-lilke protein; Provisional
Probab=24.26 E-value=1.2e+02 Score=28.24 Aligned_cols=52 Identities=12% Similarity=0.189 Sum_probs=37.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCcE-----EEEEec-----------------CCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 278 SDSDLPVMKDAAKILTMFSVPH-----EVRIVS-----------------AHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 278 s~sD~~~~~~~~~~L~~~G~~~-----~~~v~s-----------------~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
+.+..+.+....+.|++.|++. |-|.++ -|.+|+ +..+++.+++.|++|.||
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpe-fk~~~~~l~~~~I~v~VV 97 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPD-FKILGKRLKNSNIKISVV 97 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHH-HHHHHHHHHHCCCeEEEE
Confidence 4466677777788888888883 444443 124555 777899999999998877
No 374
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=24.20 E-value=3.6e+02 Score=25.09 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=42.5
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+..-...-+.+.+. ...+| ++. +++.+.+.+....+...|.++....+. -..++.+.+++
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~---------~G~~v-v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~ 78 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAK---------AGATI-VFN--DINQELVDKGLAAYRELGIEAHGYVCD-VTDEDGVQAMV 78 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHH---------CCCeE-EEE--eCCHHHHHHHHHHHHhcCCceEEEEcC-CCCHHHHHHHH
Confidence 466666655444444444332 22344 333 233455566666666666554333222 34556666665
Q ss_pred hhhhh--cCCeEEEEeccc
Q 013729 318 SSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~--~g~~v~i~~ag~ 334 (437)
.+..+ ..++++|.++|.
T Consensus 79 ~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 79 SQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHHhCCCCCEEEECCCC
Confidence 44322 246777777764
No 375
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=24.18 E-value=6.2e+02 Score=24.01 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=54.2
Q ss_pred cCCceEEEeccccccC-----CceeEEEEE-EcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHH
Q 013729 217 IPGATVHWYDKPEMRQ-----QRKMGHITI-VGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAK 290 (437)
Q Consensus 217 ~pg~~~~~~~~~~~~~-----~~~~G~Vi~-~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~ 290 (437)
+...++.+|.+..+.+ .+.-+++.- -+.|.+|-...+.++...=+ .-+=+=||..|=+..+.+-.+
T Consensus 26 l~~advviYAGSLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk--------~VvRLhSGDpsiYgA~~EQm~ 97 (254)
T COG2875 26 LEKADVVIYAGSLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGK--------DVVRLHSGDPSIYGALAEQMR 97 (254)
T ss_pred HhhCCEEEECCCcCCHHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCC--------eEEEeecCChhHHHHHHHHHH
Confidence 3456777777654433 233356664 45799999988888875311 123355777777888888899
Q ss_pred HHHHcCCcEEEE
Q 013729 291 ILTMFSVPHEVR 302 (437)
Q Consensus 291 ~L~~~G~~~~~~ 302 (437)
.|+++|++|++.
T Consensus 98 ~L~~~gI~yevv 109 (254)
T COG2875 98 ELEALGIPYEVV 109 (254)
T ss_pred HHHHcCCCeEEe
Confidence 999999999988
No 376
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=23.94 E-value=1.5e+02 Score=27.80 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=43.1
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEe------CCHHHHHHHHHHh-----cCCCCcEEEeeccCC-CeEEEEEEEE
Q 013729 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITAL-----GGFDRGLYVEKWAPF-VKELAVIVVR 75 (437)
Q Consensus 8 e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v------~~~~el~~~~~~~-----~~~~~~~lvEe~I~g-~~E~sv~~~~ 75 (437)
.+++.++++|.+-.+|-+ ||+|+.++ .+.++.+.+.+.+ ...++.+..|..... ..-+-++..+
T Consensus 122 ~~r~~L~~lgL~~~~KTS----G~kGlHV~vPl~~~~~~~~~r~fa~~lA~~l~~~~P~~~t~~~~k~~R~gkvfiDylq 197 (227)
T cd04862 122 LVRELLDELGLESFVKTS----GGKGLHVVVPLAPRAGWDEVKAFAKALAQHLARTNPDRFVATMGKAKRVGKIFIDYLR 197 (227)
T ss_pred HHHHHHHHcCCccceEcc----CCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCchhhhHHhhHHhCCCcEEEECcc
Confidence 355667789999999993 68999876 4556666554433 123433444444432 1246666666
Q ss_pred cCCCceEE
Q 013729 76 GRDKSILC 83 (437)
Q Consensus 76 d~~G~~~~ 83 (437)
+..|....
T Consensus 198 N~~g~T~v 205 (227)
T cd04862 198 NGRGATAV 205 (227)
T ss_pred CCCCCeEE
Confidence 66665443
No 377
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=23.84 E-value=1.5e+02 Score=28.22 Aligned_cols=72 Identities=21% Similarity=0.160 Sum_probs=43.6
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEe------CCHHHHHHHHHHh-----cCCCCcEEEeeccCC-CeEEEEEEEE
Q 013729 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITAL-----GGFDRGLYVEKWAPF-VKELAVIVVR 75 (437)
Q Consensus 8 e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v------~~~~el~~~~~~~-----~~~~~~~lvEe~I~g-~~E~sv~~~~ 75 (437)
.+++.++++|.+-.+|-+ ||+|+.++ .+.++.+.+.+.+ ...++.+..|..... +.-+-++..+
T Consensus 138 ~~r~~L~~lgL~~f~KTS----G~kGlHV~vPl~~~~~~~~~r~fa~~iA~~l~~~~Pd~~t~~~~k~~R~gkvfiDylq 213 (245)
T TIGR02778 138 LIRELLDELGLESFVKTS----GGKGLHVYVPLRPTLSWDEVKDFAKALAQALAQQMPDRFTAEMSKKNRVGKIFVDYLR 213 (245)
T ss_pred HHHHHHHHcCCccceEcc----CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCchhhhhHhhHHhCCCCEEEECcc
Confidence 345667789999999993 68998875 4556666554433 133444455554442 1245666666
Q ss_pred cCCCceEE
Q 013729 76 GRDKSILC 83 (437)
Q Consensus 76 d~~G~~~~ 83 (437)
+..|....
T Consensus 214 N~~g~T~v 221 (245)
T TIGR02778 214 NARGKTTV 221 (245)
T ss_pred CCCCCeEE
Confidence 66665443
No 378
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=23.81 E-value=2.1e+02 Score=31.96 Aligned_cols=141 Identities=17% Similarity=0.111 Sum_probs=0.0
Q ss_pred EcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCC-------------
Q 013729 242 VGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR------------- 308 (437)
Q Consensus 242 ~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr------------- 308 (437)
.|.+|.+.+..-.......+...+..+..+++|++ |--|-|-+..+.+..-..+...-.+|.+.|.
T Consensus 362 r~~~f~~~~~~~~~~~~~~~~~~~~~~~~~IaIlt-sGG~apGmNaairavv~~a~~~g~~v~gi~~G~~GL~~~~~~~l 440 (762)
T cd00764 362 RGKSFDKNWNLYKLLAIELPQPLPEKTNLNIAIVN-VGAPAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVEL 440 (762)
T ss_pred cchhHHHHHHHHHhccccCCccCCcccccEEEEEe-cCCCchhHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCcccC
Q ss_pred ----------------------ChhHHHHhHhhhhhcCCeEEEEecc-ccccccCcccC------CCCCCEEeccCC-CC
Q 013729 309 ----------------------TPDLMFSYASSAHERGIEIIIAGAG-GAAHLPGMVAA------RTPLPVIGVPVR-AS 358 (437)
Q Consensus 309 ----------------------~p~~~~~~~~~~~~~g~~v~i~~ag-~~~~l~~~i~~------~~~~pVi~~p~~-~~ 358 (437)
.++...+..+.+++.+++.++++.| ++-.-..-++. ....|||++|-. +.
T Consensus 441 ~~~~v~~~~~~GGt~LGT~R~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDN 520 (762)
T cd00764 441 GWIDVGGWTGRGGSELGTKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSN 520 (762)
T ss_pred CHHHHHHHHhCCcccccccCCCcHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccC
Q ss_pred CCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHH
Q 013729 359 ALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRML 397 (437)
Q Consensus 359 ~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l 397 (437)
.+.|.| .|++-|.+.|.++.++.-+
T Consensus 521 Dv~gTd--------------~siGfdTAln~~~~~id~i 545 (762)
T cd00764 521 NVPGTD--------------FSLGSDTALNALMKYCDRI 545 (762)
T ss_pred CCCCCc--------------CCCCHHHHHHHHHHHHHHH
No 379
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=23.77 E-value=6.1e+02 Score=24.39 Aligned_cols=83 Identities=12% Similarity=0.092 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhccCCccc-------ccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 247 GLVESRLNSLLKEDSSDC-------QFKILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 247 ~eA~~k~~~a~~~i~~~~-------~~~~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
++..+|..++++++.... .......|+++....++ ......+.+.+++.|+.+... .....++...++
T Consensus 34 ~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~ 111 (331)
T PRK14987 34 VALRGKIAAALDELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLA--HYGYKPEMEQER 111 (331)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhhCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHCCCEEEEe--cCCCCHHHHHHH
Confidence 456666666666544320 11123467777643222 334445667778888776543 335566655666
Q ss_pred HhhhhhcCCeEEEEe
Q 013729 317 ASSAHERGIEIIIAG 331 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~ 331 (437)
++.+..++++-+|..
T Consensus 112 ~~~~~~~~vdgiI~~ 126 (331)
T PRK14987 112 LESMLSWNIDGLILT 126 (331)
T ss_pred HHHHHhcCCCEEEEc
Confidence 666677788866654
No 380
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=23.76 E-value=3.5e+02 Score=20.91 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=50.7
Q ss_pred EcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhh
Q 013729 242 VGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH 321 (437)
Q Consensus 242 ~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~ 321 (437)
.|.|+.|.-.++.+-.... .....+.++.| ++.+.+..+.......+.|+-.+ . ...|+.+.++++..
T Consensus 4 ~G~dRyeTs~~va~~~~~~------~~~~~v~ia~g--~~~~Dalsa~~~a~~~~~PIll~--~-~~l~~~~~~~l~~~- 71 (92)
T PF04122_consen 4 SGADRYETSAKVAKKFYPD------NKSDKVYIASG--DNFADALSASPLAAKNNAPILLV--N-NSLPSSVKAFLKSL- 71 (92)
T ss_pred CCCCHHHHHHHHHHHhccc------CCCCEEEEEeC--cchhhhhhhHHHHHhcCCeEEEE--C-CCCCHHHHHHHHHc-
Confidence 3667666555444332111 12345545544 56788888887878899998777 4 77888899999643
Q ss_pred hcCCe-EEEEecccccccc
Q 013729 322 ERGIE-IIIAGAGGAAHLP 339 (437)
Q Consensus 322 ~~g~~-v~i~~ag~~~~l~ 339 (437)
+.+ |+++ |+.+.++
T Consensus 72 --~~~~v~ii--Gg~~~is 86 (92)
T PF04122_consen 72 --NIKKVYII--GGEGAIS 86 (92)
T ss_pred --CCCEEEEE--CCCCccC
Confidence 344 5555 5554444
No 381
>PRK10565 putative carbohydrate kinase; Provisional
Probab=23.67 E-value=8.9e+02 Score=25.64 Aligned_cols=36 Identities=6% Similarity=-0.065 Sum_probs=27.5
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS 305 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s 305 (437)
.+|.|++|+-.+=....-+++.|...|+++.+-..+
T Consensus 61 ~~v~vl~G~GNNGGDG~v~AR~L~~~G~~V~v~~~~ 96 (508)
T PRK10565 61 RHWLVLCGHGNNGGDGYVVARLAQAAGIDVTLLAQE 96 (508)
T ss_pred CeEEEEEcCCCchHHHHHHHHHHHHCCCceEEEEEC
Confidence 467788888778777888888888888887766544
No 382
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=23.65 E-value=6.5e+02 Score=24.35 Aligned_cols=84 Identities=10% Similarity=0.017 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhccCCcc-------cccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 247 GLVESRLNSLLKEDSSD-------CQFKILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 247 ~eA~~k~~~a~~~i~~~-------~~~~~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
+|..+|..++++++... ....+...|+++..+-++ ...+..+.+.+++.|+.+.. ...+..+++-.++
T Consensus 30 ~~tr~rV~~~a~elgY~pn~~ar~l~~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~ 107 (343)
T PRK10727 30 EASRLAVHSAMESLSYHPNANARALAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLI--GNGYHNEQKERQA 107 (343)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHhhhhCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHHHH
Confidence 55666666666654332 011133567777653222 23344556677888877543 3446667666677
Q ss_pred HhhhhhcCCeEEEEec
Q 013729 317 ASSAHERGIEIIIAGA 332 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~a 332 (437)
++.+..++++-+|+..
T Consensus 108 i~~l~~~~vdgiIi~~ 123 (343)
T PRK10727 108 IEQLIRHRCAALVVHA 123 (343)
T ss_pred HHHHHhcCCCEEEEec
Confidence 7777777888666543
No 383
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=23.57 E-value=3e+02 Score=27.01 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=49.5
Q ss_pred eEEEEEccCC----CHHHHHHHHHHHHHcCCcEEEEEec------CCCChh-HHHHhHhhhhhcCCeEEEEecccc--cc
Q 013729 271 RIGIIMGSDS----DLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGGA--AH 337 (437)
Q Consensus 271 ~V~ii~gs~s----D~~~~~~~~~~L~~~G~~~~~~v~s------~hr~p~-~~~~~~~~~~~~g~~v~i~~ag~~--~~ 337 (437)
+|+||+-|.. +.+.++...+.|+.+|+++...-.. ..++++ +..++.+-+.+..++.+++..||. +.
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~r 81 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDSNE 81 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCHhh
Confidence 3556655432 2577888899999999997654321 012333 344455555777889999888764 45
Q ss_pred ccCcccC----CCCCCEEe
Q 013729 338 LPGMVAA----RTPLPVIG 352 (437)
Q Consensus 338 l~~~i~~----~~~~pVi~ 352 (437)
|.+.+.- ...+++||
T Consensus 82 lL~~lD~~~i~~~PK~fiG 100 (308)
T cd07062 82 LLPYLDYELIKKNPKIFIG 100 (308)
T ss_pred hhhhcCHHHHhhCCCEEEe
Confidence 5554421 23455665
No 384
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.47 E-value=2.4e+02 Score=26.30 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=7.4
Q ss_pred ChhHHHHhHhhhhhcCCeE
Q 013729 309 TPDLMFSYASSAHERGIEI 327 (437)
Q Consensus 309 ~p~~~~~~~~~~~~~g~~v 327 (437)
.++.-.++++.+...+++.
T Consensus 40 ~~~~~~~~i~~~~~~~~Dg 58 (282)
T cd06318 40 DLTKQIADVEDLLTRGVNV 58 (282)
T ss_pred CHHHHHHHHHHHHHcCCCE
Confidence 3333333333334444443
No 385
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=23.47 E-value=1.7e+02 Score=30.80 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=36.9
Q ss_pred cCCCChhHHHHhHhhhhhcCC---eEEEEecccc-ccccCcccC--CCCCCEEeccCC
Q 013729 305 SAHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMVAA--RTPLPVIGVPVR 356 (437)
Q Consensus 305 s~hr~p~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i~~--~~~~pVi~~p~~ 356 (437)
-.+++.+.+.+....+.+.|+ .++++..|+. .++++++|+ .--.|.|.+|+.
T Consensus 215 e~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y~RGi~~i~vPTT 272 (488)
T PRK13951 215 EEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTT 272 (488)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHhcCCCeEecCcc
Confidence 456666666666667777777 6777777664 678888776 356788888885
No 386
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=23.39 E-value=5.1e+02 Score=24.84 Aligned_cols=115 Identities=14% Similarity=0.224 Sum_probs=54.7
Q ss_pred CCeEEEEEccCCC--HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccc--cccccCc--c
Q 013729 269 LPRIGIIMGSDSD--LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG--AAHLPGM--V 342 (437)
Q Consensus 269 ~~~V~ii~gs~sD--~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~--~~~l~~~--i 342 (437)
-.+++++..+... ....+.+.+..+++|+++....+ .+.+++.+.++.+.+. .+++...... ..+...+ .
T Consensus 131 ~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v---~~~~~~~~~~~~l~~~-~da~~~~~~~~~~~~~~~i~~~ 206 (294)
T PF04392_consen 131 AKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPV---PSSEDLEQALEALAEK-VDALYLLPDNLVDSNFEAILQL 206 (294)
T ss_dssp --EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEE---SSGGGHHHHHHHHCTT--SEEEE-S-HHHHHTHHHHHHH
T ss_pred CCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEec---CcHhHHHHHHHHhhcc-CCEEEEECCcchHhHHHHHHHH
Confidence 3567666643221 34566666777889998765543 3455566666665553 4555443311 1111112 2
Q ss_pred cCCCCCCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC---CcchHHHHHHHHHccCCh
Q 013729 343 AARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN---NATNAGLLAVRMLGFGDA 402 (437)
Q Consensus 343 ~~~~~~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~---~~~~aa~~a~~~l~~~~~ 402 (437)
+.....||++.=.. .+..|. ++.+.++ -|..||-+|.+||.-.++
T Consensus 207 ~~~~~iPv~~~~~~--------------~v~~Ga-l~~~~~~~~~~G~~Aa~~a~~IL~G~~~ 254 (294)
T PF04392_consen 207 ANEAKIPVFGSSDF--------------YVKAGA-LGGYSVDYYEQGRQAAEMAVRILKGEKP 254 (294)
T ss_dssp CCCTT--EEESSHH--------------HHCTT--SEEEE--HHHHHHHHHHHHHHHCTT--G
T ss_pred HHhcCCCEEECCHH--------------HhcCCc-EEEEccCHHHHHHHHHHHHHHHHCCCCc
Confidence 34567788874211 112332 2223333 378888899998875443
No 387
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=23.37 E-value=6.6e+02 Score=24.01 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhccCCcc-------cccCCCCeEEEEEccCCC--H-HHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 247 GLVESRLNSLLKEDSSD-------CQFKILPRIGIIMGSDSD--L-PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 247 ~eA~~k~~~a~~~i~~~-------~~~~~~~~V~ii~gs~sD--~-~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
+|..++..++++++... ....+...|+++....++ + .....+.+.+++.|+.+... ..+..++...++
T Consensus 32 ~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~ 109 (328)
T PRK11303 32 DKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIA--CSDDQPDNEMRC 109 (328)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEE--eCCCCHHHHHHH
Confidence 45555665565554322 001123467777643222 1 22334456667788776543 335566666666
Q ss_pred HhhhhhcCCeEEEEe
Q 013729 317 ASSAHERGIEIIIAG 331 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~ 331 (437)
++.+...+++-+|..
T Consensus 110 ~~~l~~~~vdgiIi~ 124 (328)
T PRK11303 110 AEHLLQRQVDALIVS 124 (328)
T ss_pred HHHHHHcCCCEEEEc
Confidence 666667778866554
No 388
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.30 E-value=3.3e+02 Score=22.84 Aligned_cols=22 Identities=14% Similarity=-0.052 Sum_probs=15.5
Q ss_pred EEEEEEcCCHHHHHHHHHHhhc
Q 013729 237 GHITIVGSSMGLVESRLNSLLK 258 (437)
Q Consensus 237 G~Vi~~G~s~~eA~~k~~~a~~ 258 (437)
-.+++.|.+...|..-+.....
T Consensus 16 i~~~G~G~s~~~a~e~~~kl~e 37 (153)
T cd05009 16 FYVLGRGPNYGTALEGALKLKE 37 (153)
T ss_pred EEEEcCCCCHHHHHHHHHHHHH
Confidence 4577888888888776665554
No 389
>PRK05876 short chain dehydrogenase; Provisional
Probab=23.26 E-value=3.4e+02 Score=25.69 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhc--CCeEEEEeccc
Q 013729 279 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~--g~~v~i~~ag~ 334 (437)
+.+.+.+.++.+.|...|.++....+. -..++.+.+++++..+. .++++|-.||.
T Consensus 37 ~r~~~~l~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 37 DVDKPGLRQAVNHLRAEGFDVHGVMCD-VRHREEVTHLADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred eCCHHHHHHHHHHHHhcCCeEEEEeCC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 345566777777777667554322222 23456666666543322 46777777764
No 390
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=23.25 E-value=4.3e+02 Score=21.83 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 114 TDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 114 ~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
.+++.++++.||.. ...+++..-+||+.|+ +++.-.-+
T Consensus 10 ~~La~~ia~~L~~~-~~~~~~~~F~dGE~~v-~i~~~v~g 47 (116)
T PF13793_consen 10 QDLAERIAEALGIP-LGKVETKRFPDGETYV-RIPESVRG 47 (116)
T ss_dssp HHHHHHHHHHTTS--EE-EEEEE-TTS-EEE-EESS--TT
T ss_pred HHHHHHHHHHhCCc-eeeeEEEEcCCCCEEE-EecccccC
Confidence 45889999999985 4445655557998886 77665443
No 391
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=23.19 E-value=62 Score=33.64 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=40.9
Q ss_pred HHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccc------cCccc-CCCCCCEEeccCC
Q 013729 292 LTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL------PGMVA-ARTPLPVIGVPVR 356 (437)
Q Consensus 292 L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l------~~~i~-~~~~~pVi~~p~~ 356 (437)
...+|-. +.+..|.+....+.++.+++.|++.++++.| ...+ ...+. -....+||++|-.
T Consensus 144 i~~~GGT----iLGTsR~~~~~~~iv~~L~~~~I~~L~vIGG-dgT~~gA~~l~ee~~~~g~~I~VIGIPKT 210 (443)
T PRK06830 144 IHEFGGT----ILGSSRGPQDPEEIVDTLERMNINILFVIGG-DGTLRGASAIAEEIERRGLKISVIGIPKT 210 (443)
T ss_pred HHhCCCc----cccCCCCchhHHHHHHHHHHcCCCEEEEeCC-chHHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 4556764 4445788888899999999999998888753 2222 22221 2346899999964
No 392
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=23.18 E-value=1e+02 Score=27.12 Aligned_cols=61 Identities=25% Similarity=0.251 Sum_probs=34.5
Q ss_pred CCCeEEEEEccCCCH---HHHHHHHHHHHHcCCc---E-EEEEecCCCChhHHHHhHhhhhhcCCeEEEEe
Q 013729 268 ILPRIGIIMGSDSDL---PVMKDAAKILTMFSVP---H-EVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~---~~~~~~~~~L~~~G~~---~-~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
+..+++||...-.+. .-...+.+.|++.|++ + ..+|.++-=.|-....++ +...++.+|+.
T Consensus 11 ~~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~---~~~~~DavIal 78 (154)
T PRK00061 11 KGLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLA---ESGKYDAVIAL 78 (154)
T ss_pred CCCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHH---HcCCCCEEEEE
Confidence 345787877554433 4455667888999954 2 344555544454444444 33456766653
No 393
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=23.08 E-value=1.4e+02 Score=22.02 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=20.9
Q ss_pred HcCCceEEEEEEEEeCCCcEEEEEEcC
Q 013729 123 SLEGAGIFAVELFWTNNGQILLNEVAP 149 (437)
Q Consensus 123 alg~~G~~~ve~~~~~dg~~~viEiNp 149 (437)
..+..|...++|.+++||.+.-++|-.
T Consensus 11 ~~~~~G~v~v~~~I~~~G~v~~~~v~~ 37 (79)
T PF03544_consen 11 RRGIEGTVVVEFTIDPDGRVSDVRVIQ 37 (79)
T ss_dssp HHTEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred HCCCeEEEEEEEEEeCCCCEEEEEEEE
Confidence 347789999999999999776555543
No 394
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.93 E-value=1.8e+02 Score=28.14 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=45.1
Q ss_pred HHHHcCCcEEEEEe-c--CCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEec
Q 013729 291 ILTMFSVPHEVRIV-S--AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 353 (437)
Q Consensus 291 ~L~~~G~~~~~~v~-s--~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~ 353 (437)
.++++|++....+. + ..-+|.++.++++..++.+++++++-...+..+...|+..+-.+|+.+
T Consensus 192 l~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l 257 (286)
T cd01019 192 FEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGAKVGEL 257 (286)
T ss_pred HHHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCceEEEe
Confidence 33778998544332 1 234588888898889999999999877767777777776666666554
No 395
>PRK08339 short chain dehydrogenase; Provisional
Probab=22.92 E-value=3.3e+02 Score=25.52 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHc-CCcEEEEEecCCCChhHHHHhHhhhhh-cCCeEEEEeccc
Q 013729 280 SDLPVMKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHE-RGIEIIIAGAGG 334 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~-G~~~~~~v~s~hr~p~~~~~~~~~~~~-~g~~v~i~~ag~ 334 (437)
.+.+.+.+..+.+... +.++....+. -..++.+.+++++.++ .+++++|..+|.
T Consensus 40 r~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~i~~~~~~~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 40 RNEENLKKAREKIKSESNVDVSYIVAD-LTKREDLERTVKELKNIGEPDIFFFSTGG 95 (263)
T ss_pred CCHHHHHHHHHHHHhhcCCceEEEEec-CCCHHHHHHHHHHHHhhCCCcEEEECCCC
Confidence 3455566666555443 4333222222 2345556666654433 246777777764
No 396
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=22.91 E-value=1.8e+02 Score=27.44 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=43.7
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEe------CCHHHHHHHHHHhc-----CCCCcEEEeeccCC-CeEEEEEEEE
Q 013729 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITALG-----GFDRGLYVEKWAPF-VKELAVIVVR 75 (437)
Q Consensus 8 e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v------~~~~el~~~~~~~~-----~~~~~~lvEe~I~g-~~E~sv~~~~ 75 (437)
.+++.++++|.+-.+|-+ ||+|+.++ .+.++.+.+.+.+. ..++.+..+-.... ..-+-++..+
T Consensus 126 ~~r~~L~~lgL~s~~KTS----G~kGlHV~vPl~~~~~~~~vr~fa~~~A~~l~~~~P~~~t~~~~k~~R~grvfiDylq 201 (231)
T cd04863 126 WLRDRLAALGLASFPKTS----GSKGLHLYVPLDGPVSSDQTKEFAKALARELEREHPDLVVSRMTKSLRAGKVFVDWSQ 201 (231)
T ss_pred HHHHHHHHcCCccceECC----CCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCchhhhhHhhHhhCCCcEEEECcc
Confidence 456677889999999993 68998875 46677665554331 23333333333321 1246677777
Q ss_pred cCCCceEEe
Q 013729 76 GRDKSILCY 84 (437)
Q Consensus 76 d~~G~~~~~ 84 (437)
+..|.....
T Consensus 202 N~~g~T~va 210 (231)
T cd04863 202 NDAAKTTIA 210 (231)
T ss_pred CCCCCeEEe
Confidence 666665443
No 397
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=22.86 E-value=63 Score=24.40 Aligned_cols=21 Identities=5% Similarity=0.009 Sum_probs=18.8
Q ss_pred EEEEcCCHHHHHHHHHHhhcc
Q 013729 239 ITIVGSSMGLVESRLNSLLKE 259 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~ 259 (437)
+...|+|.+||+++++.++..
T Consensus 26 c~s~G~T~eea~~n~~eai~l 46 (73)
T COG1598 26 CHSQGETLEEALQNAKEAIEL 46 (73)
T ss_pred ccccCCCHHHHHHHHHHHHHH
Confidence 777999999999999999763
No 398
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=22.83 E-value=1.7e+02 Score=27.51 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=43.2
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEe------CCHHHHHHHHHHh-----cCCCCcEEEeeccCC-CeEEEEEEEE
Q 013729 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITAL-----GGFDRGLYVEKWAPF-VKELAVIVVR 75 (437)
Q Consensus 8 e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v------~~~~el~~~~~~~-----~~~~~~~lvEe~I~g-~~E~sv~~~~ 75 (437)
.+++.++++|.+-.+|-+ ||+|+.++ .+.++.+.+.+.+ ...++.+..|..... +.-+-++..+
T Consensus 122 ~vr~~L~~lgL~~f~KTS----G~kGlHV~vPl~~~~~~~~~r~fa~~iA~~l~~~~P~~~t~~~~k~~R~grvfiDy~q 197 (227)
T cd04861 122 LLRELLDELGLESFPKTS----GGKGLHVYVPLAPRYTWDEVRAFAKALARELARRLPDLFTAEMAKAKRGGKIFVDYLQ 197 (227)
T ss_pred HHHHHHHHcCCccceEcc----CCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCchhhhhHhhHHhCCCCEEEECcc
Confidence 456677889999999993 68998875 4556666555433 133444444444442 1345566666
Q ss_pred cCCCceEE
Q 013729 76 GRDKSILC 83 (437)
Q Consensus 76 d~~G~~~~ 83 (437)
+..|....
T Consensus 198 N~~g~T~v 205 (227)
T cd04861 198 NARGKTTV 205 (227)
T ss_pred CCCCCeEE
Confidence 65565443
No 399
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=22.83 E-value=2.5e+02 Score=26.91 Aligned_cols=112 Identities=9% Similarity=0.076 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCCh-hHHHHhHhhhhhcCCeEEE-Eec-ccc--cc---ccCcccCCCCCCEEec
Q 013729 282 LPVMKDAAKILTMFSVPHEVRIVSAHRTP-DLMFSYASSAHERGIEIII-AGA-GGA--AH---LPGMVAARTPLPVIGV 353 (437)
Q Consensus 282 ~~~~~~~~~~L~~~G~~~~~~v~s~hr~p-~~~~~~~~~~~~~g~~v~i-~~a-g~~--~~---l~~~i~~~~~~pVi~~ 353 (437)
.+.+.++.+..++.|+.+..++..+.|+| +.+.++.+.+.+.|++.+. +-. |.. .. +...+......| |++
T Consensus 111 ~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~-i~~ 189 (262)
T cd07948 111 IESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCD-IEF 189 (262)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCe-EEE
Confidence 45566667888899999999988889986 7888888888888888543 222 221 12 222333322222 232
Q ss_pred cCCCCCCCChhhHHHhhhCCCCCceEEEEeCC-cchHHHHHHHH
Q 013729 354 PVRASALDGLDSLLSIVQMPRGVPVATVAINN-ATNAGLLAVRM 396 (437)
Q Consensus 354 p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~-~~~aa~~a~~~ 396 (437)
=.-.. -|+.---+..++-.|+-.+-..+++ |+.|+..+++.
T Consensus 190 H~Hn~--~Gla~an~~~a~~aG~~~vd~s~~GlGeraGn~~~e~ 231 (262)
T cd07948 190 HGHND--TGCAIANAYAALEAGATHIDTTVLGIGERNGITPLGG 231 (262)
T ss_pred EECCC--CChHHHHHHHHHHhCCCEEEEeccccccccCCccHHH
Confidence 22122 2443223555667887777333332 44544444443
No 400
>PLN02780 ketoreductase/ oxidoreductase
Probab=22.78 E-value=3.1e+02 Score=26.86 Aligned_cols=86 Identities=9% Similarity=0.116 Sum_probs=40.7
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCC-hhHHH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRT-PDLMF 314 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~hr~-p~~~~ 314 (437)
.++.+|.+..=-.+-+.+.++ ....| ++. +.+.+.++++.+.++.. +..+....+..... .+...
T Consensus 55 ~~lITGAs~GIG~alA~~La~---------~G~~V-il~--~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~ 122 (320)
T PLN02780 55 WALVTGPTDGIGKGFAFQLAR---------KGLNL-VLV--ARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVK 122 (320)
T ss_pred EEEEeCCCcHHHHHHHHHHHH---------CCCCE-EEE--ECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHH
Confidence 456677665544444444432 22245 333 34566777777777653 22322222222222 33334
Q ss_pred HhHhhhhhcCCeEEEEecccc
Q 013729 315 SYASSAHERGIEIIIAGAGGA 335 (437)
Q Consensus 315 ~~~~~~~~~g~~v~i~~ag~~ 335 (437)
++.+......++++|-.||..
T Consensus 123 ~l~~~~~~~didilVnnAG~~ 143 (320)
T PLN02780 123 RIKETIEGLDVGVLINNVGVS 143 (320)
T ss_pred HHHHHhcCCCccEEEEecCcC
Confidence 444433333355788888753
No 401
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=22.78 E-value=1.8e+02 Score=28.70 Aligned_cols=69 Identities=10% Similarity=0.160 Sum_probs=38.0
Q ss_pred eEEEEEccCCCHHHHHHHHHHHH-HcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcc
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILT-MFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV 342 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~-~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 342 (437)
+|.+|+ .+.+.++.+++.+. ..++++..-++.--+.-+.-.++.+.+.+-.+-++|=+.|++...|...
T Consensus 75 nvvLIs---Rt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~VgILVNNvG~~~~~P~~f 144 (312)
T KOG1014|consen 75 NVVLIS---RTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVGILVNNVGMSYDYPESF 144 (312)
T ss_pred EEEEEe---CCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceEEEEecccccCCCcHHH
Confidence 354553 56788888876664 4665554444443332222333444444444556676778776446655
No 402
>PRK03298 hypothetical protein; Provisional
Probab=22.74 E-value=6.4e+02 Score=23.62 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=55.3
Q ss_pred EEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeeeEEe----cCc
Q 013729 20 LMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHK----ENI 95 (437)
Q Consensus 20 vvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~~~~----~g~ 95 (437)
+|+|| .++ .+||+...-.+=+.+ .++.+-++.+++. -...+..++.+.++.+.....+-.+. -++
T Consensus 27 iiiK~-DGs------vlVH~d~~~~kPlNW---~pp~~~~~~~~~~-g~~~v~svr~kp~E~L~I~~~~V~~~~~~~l~~ 95 (224)
T PRK03298 27 LLVKA-DGS------VSVHADDRAYKPLNW---MSPPCTLTEEPPG-GVEEVWRVENKAGEQLRITIEEILHDSSHDLGV 95 (224)
T ss_pred EEEcc-CCe------EEEecCCCCCCCccc---CCCCeEEEEEecC-CcEEEEEEecCCCCEEEEEEEEEEEEEEEeccC
Confidence 79999 332 566655321111111 2344666666653 23555555555555443322211111 111
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHc-----CCc-eEEEEEEEE-eCCCcEEEEEEcCC
Q 013729 96 CHIVKAPAAVPWKISELATDVAHKAVSSL-----EGA-GIFAVELFW-TNNGQILLNEVAPR 150 (437)
Q Consensus 96 ~~~~~~P~~l~~~~~~~i~~~a~~i~~al-----g~~-G~~~ve~~~-~~dg~~~viEiNpR 150 (437)
.. ...-.....++++.|.+--..+-+.+ .+. ....||++- +++|.+.++|+-.|
T Consensus 96 ~~-~L~~~G~Ea~Lq~~lae~p~~i~~G~~lv~rE~~t~~G~IDil~rD~~G~~V~vEvKRr 156 (224)
T PRK03298 96 DP-GLVKDGVEAHLQELLAEHIETLGEGYTLVRREYPTAIGPVDLLCRDADGGTVAVEIKRR 156 (224)
T ss_pred CC-CcEEeeeHHHHHHHHHhCHHHhcCCCEEEEEEecCCCCceeEEEEcCCCCEEEEEEEec
Confidence 00 00011123444444444433333322 122 234578665 44799999999999
No 403
>PRK07109 short chain dehydrogenase; Provisional
Probab=22.69 E-value=3.6e+02 Score=26.49 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=41.3
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.|+++|.+-.--..-++..++ ....| ++.+ .+.+.+++..+.++..|.++....+. -..++.+.+.+
T Consensus 10 ~vlITGas~gIG~~la~~la~---------~G~~V-vl~~--R~~~~l~~~~~~l~~~g~~~~~v~~D-v~d~~~v~~~~ 76 (334)
T PRK07109 10 VVVITGASAGVGRATARAFAR---------RGAKV-VLLA--RGEEGLEALAAEIRAAGGEALAVVAD-VADAEAVQAAA 76 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHH---------CCCEE-EEEE--CCHHHHHHHHHHHHHcCCcEEEEEec-CCCHHHHHHHH
Confidence 466666655544444444332 12244 3322 34455666666666666654332222 23455565555
Q ss_pred hhhhh--cCCeEEEEeccc
Q 013729 318 SSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~--~g~~v~i~~ag~ 334 (437)
+...+ ..++++|-++|.
T Consensus 77 ~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 77 DRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHCCCCCEEEECCCc
Confidence 43322 246677766653
No 404
>PRK15138 aldehyde reductase; Provisional
Probab=22.69 E-value=1.9e+02 Score=29.39 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=36.6
Q ss_pred eEEEEEccCCC--HHHHHHHHHHHHHcCCcEEEE-EecCCCChhHHHHhHhhhhhcCCeEEEEeccccc
Q 013729 271 RIGIIMGSDSD--LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 336 (437)
Q Consensus 271 ~V~ii~gs~sD--~~~~~~~~~~L~~~G~~~~~~-v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~ 336 (437)
++.|+++..+- .....++.+.|+ |+.+..- -+..+=+.+.+.+..+.+++.+++++|++.||+.
T Consensus 31 ~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 97 (387)
T PRK15138 31 RVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSV 97 (387)
T ss_pred eEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHH
Confidence 55566653321 223455566664 5543221 1223455566777777778888999998887653
No 405
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=22.53 E-value=1.2e+02 Score=29.92 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=25.3
Q ss_pred CCeEEEEEccCCC-----HHHHHHHHHHHHHcCCcEEEE
Q 013729 269 LPRIGIIMGSDSD-----LPVMKDAAKILTMFSVPHEVR 302 (437)
Q Consensus 269 ~~~V~ii~gs~sD-----~~~~~~~~~~L~~~G~~~~~~ 302 (437)
+.+|++++|+.|. +.-...+.+.|++.|+++..-
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~ 41 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPI 41 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEE
Confidence 3578899999887 345667788888889886533
No 406
>PRK14685 hypothetical protein; Provisional
Probab=22.50 E-value=2.9e+02 Score=24.91 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCC-------c-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 111 ELATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 111 ~~i~~~a~~i~~alg~-------~-G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
..-+++|...++.-|| + ....||++..+++.+.|+||-.|-+.
T Consensus 46 ~~gE~~Aa~yL~~~Gy~IL~RN~R~~~GEIDIIA~dg~~LVFVEVKtR~~~ 96 (177)
T PRK14685 46 QAYESAALRWLARQGLRPLARNLRCRAGEIDLAMRDGEVLVLVEVRARAHA 96 (177)
T ss_pred HHHHHHHHHHHHHCCCEEeEeeecCCCCcEEEEEecCCEEEEEEEeECCCC
Confidence 3456677777776664 3 45679998877778999999999764
No 407
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=22.48 E-value=3e+02 Score=19.78 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=15.3
Q ss_pred EEEccCCCHHHHHHHHHHHH-HcCCcE
Q 013729 274 IIMGSDSDLPVMKDAAKILT-MFSVPH 299 (437)
Q Consensus 274 ii~gs~sD~~~~~~~~~~L~-~~G~~~ 299 (437)
+..|..++...++.+.+.|+ ..|++.
T Consensus 46 V~~G~f~~~~~A~~~~~~l~~~~~~~~ 72 (76)
T PF05036_consen 46 VRVGPFSSREEAEAALRKLKKAAGPDA 72 (76)
T ss_dssp EEECCECTCCHHHHHHHHHHHHHTS--
T ss_pred EEECCCCCHHHHHHHHHHHhHhhCCCC
Confidence 45566666666777766666 555553
No 408
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=22.44 E-value=4.7e+02 Score=24.52 Aligned_cols=35 Identities=9% Similarity=0.100 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhh
Q 013729 284 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH 321 (437)
Q Consensus 284 ~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~ 321 (437)
.++.+.+.|+.+||.+.+. -..+.+++.+.++++.
T Consensus 31 D~~~l~~~f~~lgF~V~~~---~dlt~~em~~~l~~~~ 65 (241)
T smart00115 31 DAENLTELFQSLGYEVHVK---NNLTAEEMLEELKEFA 65 (241)
T ss_pred HHHHHHHHHHHCCCEEEEe---cCCCHHHHHHHHHHHH
Confidence 5677777888888876544 1445455555554443
No 409
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=22.41 E-value=1.7e+02 Score=28.82 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCC
Q 013729 105 VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151 (437)
Q Consensus 105 l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~ 151 (437)
++++...++.+++.++-+.+|. +..|||.++. |++|++.+-|-.
T Consensus 260 l~~~~~~~L~~l~~~le~~~g~--p~DIEw~~~~-~~l~iLQaRPi~ 303 (327)
T PF01326_consen 260 LSDEQLQQLAELARKLEEHFGR--PQDIEWAIDG-GQLYILQARPIT 303 (327)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTS---EEEEEEEET-TEEEEEEEEE--
T ss_pred cCHHHHHHHHHHHHHHHHHcCC--CeEEEEEEEC-CEEEEEEecccc
Confidence 7888999999999999998876 6999999985 889998876653
No 410
>PRK07063 short chain dehydrogenase; Provisional
Probab=22.39 E-value=4.2e+02 Score=24.47 Aligned_cols=84 Identities=12% Similarity=0.136 Sum_probs=40.1
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHH--cCCcEEEEEecCCCChhHHHH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTM--FSVPHEVRIVSAHRTPDLMFS 315 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~--~G~~~~~~v~s~hr~p~~~~~ 315 (437)
.++++|.+..=-..-+...++ ....| ++. +.+.+..++..+.+.. .+.++....+. -..++.+.+
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~---------~G~~v-v~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~ 75 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAR---------EGAAV-ALA--DLDAALAERAAAAIARDVAGARVLAVPAD-VTDAASVAA 75 (260)
T ss_pred EEEEECCCchHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhccCCceEEEEEcc-CCCHHHHHH
Confidence 466666655433333333332 22344 333 2345566666666665 34333322222 233455555
Q ss_pred hHhhhhh--cCCeEEEEeccc
Q 013729 316 YASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 316 ~~~~~~~--~g~~v~i~~ag~ 334 (437)
++++..+ .+++++|-.+|.
T Consensus 76 ~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 76 AVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHHHHhCCCcEEEECCCc
Confidence 5543322 257788877764
No 411
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=22.24 E-value=75 Score=27.85 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=35.0
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEE----EEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 269 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHE----VRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 269 ~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~----~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
.-+++|+.+.-.+ -.-++.+.+.|+++|..++ ++|-++.-.|-...++. +...++.+|+
T Consensus 12 ~~riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La---~~~~yDAvv~ 77 (152)
T COG0054 12 GLRIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLA---RTGKYDAVVA 77 (152)
T ss_pred CceEEEEEeehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHH---hcCCcceEEE
Confidence 3467777654322 1334455678888998865 66667777774444444 3334666665
No 412
>PF06319 DUF1052: Protein of unknown function (DUF1052); InterPro: IPR009394 This entry is represented by Ralstonia phage RSL1, Orf212. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of unknown function.; PDB: 3DNX_A.
Probab=22.10 E-value=2.6e+02 Score=24.60 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEE--------EEEE-EeCCCcEEEEEEcC
Q 013729 108 KISELATDVAHKAVSSLEGAGIFA--------VELF-WTNNGQILLNEVAP 149 (437)
Q Consensus 108 ~~~~~i~~~a~~i~~alg~~G~~~--------ve~~-~~~dg~~~viEiNp 149 (437)
+....+..-+.+++..+|+.++.. +|++ ++++|+++++||-.
T Consensus 19 ~~a~~v~RGv~R~l~~~g~~~l~E~~L~~GRRaDv~al~~kGeI~ivEIKS 69 (157)
T PF06319_consen 19 ETALAVARGVCRLLRSLGFACLPEVPLPNGRRADVMALGPKGEIWIVEIKS 69 (157)
T ss_dssp -----HHHHHHHHHHHTT-EEEEEE-SSTT--EEEEEE-TT--EEEEEE-S
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEecCCCCCeEEEEEECCCCeEEEEEEEc
Confidence 344567777788888888766543 3544 45567788888754
No 413
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=21.87 E-value=3.1e+02 Score=26.01 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE--ecCCCChhHHHHhHhhh
Q 013729 243 GSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI--VSAHRTPDLMFSYASSA 320 (437)
Q Consensus 243 G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v--~s~hr~p~~~~~~~~~~ 320 (437)
+.|.++++.++..+++..+... -.-.+.+...+..+.+.+.+.++.+.+.|... ..+ ..-.-+|+++.++++.+
T Consensus 102 ~~~~~~~~~~~~~~i~~a~~~G---~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-i~l~DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 102 GKDRAWVLDQLRRLVGRAKDRG---LFVSVGAEDASRADPDFLIEFAEVAQEAGADR-LRFADTVGILDPFTTYELIRRL 177 (259)
T ss_pred CCCHHHHHHHHHHHHHHHHHCC---CeEEEeeccCCCCCHHHHHHHHHHHHHCCCCE-EEeCCCCCCCCHHHHHHHHHHH
Confidence 5788899988888877544210 01123344556678999999999999999873 222 22366799999988766
Q ss_pred hh
Q 013729 321 HE 322 (437)
Q Consensus 321 ~~ 322 (437)
++
T Consensus 178 ~~ 179 (259)
T cd07939 178 RA 179 (259)
T ss_pred HH
Confidence 54
No 414
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=21.83 E-value=7.1e+02 Score=23.80 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhHh
Q 013729 402 ADLRARMQQYMEDMRDDVLTKAEKLQKD 429 (437)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (437)
+.+.++.+++|.++.+.+.+.|++|.+.
T Consensus 190 ~~~~~~~~~~r~~l~e~vae~dd~L~e~ 217 (270)
T cd01886 190 EDLLEEAEEAREELIETLAEFDDELMEK 217 (270)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3567889999999999999999888665
No 415
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.70 E-value=2e+02 Score=28.02 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=10.6
Q ss_pred cCCeEEEEeccccc
Q 013729 323 RGIEIIIAGAGGAA 336 (437)
Q Consensus 323 ~g~~v~i~~ag~~~ 336 (437)
.+++|+|-.||.+.
T Consensus 90 g~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 90 GRVDVLVNNAGISL 103 (282)
T ss_pred CCCCEEEecCcccc
Confidence 46888888887763
No 416
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=21.56 E-value=2.8e+02 Score=29.07 Aligned_cols=54 Identities=15% Similarity=-0.051 Sum_probs=34.4
Q ss_pred EEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcE
Q 013729 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPH 299 (437)
Q Consensus 237 G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~ 299 (437)
|.++++.+...+ ..++.+.+....+ ...|+.|++.....+..+.+.+++.|+++
T Consensus 153 GTiLGTSR~~~~-~~~iv~~L~~~~I--------~~L~vIGGdgT~~~A~~L~ee~~~~g~~I 206 (459)
T PTZ00286 153 GTILGSSRGGFD-PKVMVDTLIRHGI--------NILFTLGGDGTHRGALAIYKELRRRKLNI 206 (459)
T ss_pred CceeccCCChhh-HHHHHHHHHHcCC--------CEEEEeCCchHHHHHHHHHHHHHHhCCCc
Confidence 677777765532 3444444433221 23377888888888888888888888653
No 417
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=21.54 E-value=6.4e+02 Score=24.43 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHHcCCc-EEEEEecC
Q 013729 281 DLPVMKDAAKILTMFSVP-HEVRIVSA 306 (437)
Q Consensus 281 D~~~~~~~~~~L~~~G~~-~~~~v~s~ 306 (437)
+.+.+.++++.+++.|+. +++.+.++
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP 137 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCP 137 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 344455555555544443 34444433
No 418
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=21.48 E-value=4.6e+02 Score=21.55 Aligned_cols=53 Identities=11% Similarity=0.207 Sum_probs=35.0
Q ss_pred CeEEEEEccCCC-HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh
Q 013729 270 PRIGIIMGSDSD-LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE 322 (437)
Q Consensus 270 ~~V~ii~gs~sD-~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~ 322 (437)
+.+.|..|.+.+ ........+..+++|+.++....+..-+.+++.+.++++.+
T Consensus 31 ~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 31 KLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 344455554433 34555667888999999999988888888888888876543
No 419
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=21.37 E-value=2.1e+02 Score=27.47 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE---------ecC----CCCh
Q 013729 244 SSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI---------VSA----HRTP 310 (437)
Q Consensus 244 ~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v---------~s~----hr~p 310 (437)
.|.++|++++.+..++--. ..| =+.|+. ...+..+.|.+.|+|+-.++ .+- -|+.
T Consensus 91 ~s~e~av~nA~rl~ke~Ga-------daV-KlEGg~----~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~ 158 (261)
T PF02548_consen 91 ASPEQAVRNAGRLMKEAGA-------DAV-KLEGGA----EIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGKTA 158 (261)
T ss_dssp SSHHHHHHHHHHHHHTTT--------SEE-EEEBSG----GGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CSTSH
T ss_pred CCHHHHHHHHHHHHHhcCC-------CEE-Eeccch----hHHHHHHHHHHCCCcEEEEecCchhheeccCCceEEecCH
Confidence 6889999999988874221 123 456664 34566778899999988776 111 1455
Q ss_pred hHHHHhHh---hhhhcCCeEEEEeccccccccCcccCCCCCCEEeccC
Q 013729 311 DLMFSYAS---SAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 355 (437)
Q Consensus 311 ~~~~~~~~---~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 355 (437)
+...++++ .+++.|+-.++. -.....|...|......|+||+=.
T Consensus 159 ~~a~~l~~~A~ale~AGaf~ivl-E~vp~~la~~It~~l~IPtIGIGa 205 (261)
T PF02548_consen 159 EEAEKLLEDAKALEEAGAFAIVL-ECVPAELAKAITEALSIPTIGIGA 205 (261)
T ss_dssp HHHHHHHHHHHHHHHHT-SEEEE-ESBBHHHHHHHHHHSSS-EEEESS
T ss_pred HHHHHHHHHHHHHHHcCccEEee-ecCHHHHHHHHHHhCCCCEEecCC
Confidence 55555554 557777764443 235668888899999999999855
No 420
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=21.16 E-value=7e+02 Score=23.73 Aligned_cols=83 Identities=8% Similarity=0.017 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhccCCccc-------ccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 247 GLVESRLNSLLKEDSSDC-------QFKILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 247 ~eA~~k~~~a~~~i~~~~-------~~~~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
++..++..++++++.... ...+.+.++++....++ ...+..+.+.+.+.|+.+... ..+..+++..++
T Consensus 30 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~--~~~~~~~~~~~~ 107 (311)
T TIGR02405 30 IETRERVEQVIQQSGFVPSKSARAMRGGSDKVVAVIVSRLDSPSENLAVSGMLPVFYTAGYDPIIM--ESQFSPQLTNEH 107 (311)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCcccccHHHHHHHHHHHHHHCCCeEEEe--cCCCChHHHHHH
Confidence 445555655555543220 11133467777643222 334667778888999885443 446778877777
Q ss_pred HhhhhhcCCeEEEEe
Q 013729 317 ASSAHERGIEIIIAG 331 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~ 331 (437)
++.+..+.++-+|..
T Consensus 108 ~~~l~~~~vdGvIi~ 122 (311)
T TIGR02405 108 LSVLQKRNVDGVILF 122 (311)
T ss_pred HHHHHhcCCCEEEEe
Confidence 777777778855554
No 421
>PRK13990 cell division topological specificity factor MinE; Provisional
Probab=21.15 E-value=4e+02 Score=21.18 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=28.7
Q ss_pred CCHHHHHHHHH-HHHHHHHHcCCc--eEEEEEEEEeCCCcEEEEEEcC
Q 013729 105 VPWKISELATD-VAHKAVSSLEGA--GIFAVELFWTNNGQILLNEVAP 149 (437)
Q Consensus 105 l~~~~~~~i~~-~a~~i~~alg~~--G~~~ve~~~~~dg~~~viEiNp 149 (437)
.+++..++|++ +..-+.+.+.+. .+..|++-++.++..-++|+|-
T Consensus 40 ~~pd~L~~lk~eIl~VI~KYv~Id~~~i~dV~v~le~~~~~~~LevnI 87 (90)
T PRK13990 40 ISSHLLAELKDEIIEVVKKYVALSEENIRDIDLKVEDSSKNSTIEVNI 87 (90)
T ss_pred CCHHHHHHHHHHHHHHHHHheecChhccceEEEEEecCCCeEEEEEee
Confidence 45566666654 334444555543 5556777787777788999984
No 422
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=21.14 E-value=5.2e+02 Score=24.84 Aligned_cols=101 Identities=21% Similarity=0.195 Sum_probs=66.5
Q ss_pred EcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE----ecC---------CC
Q 013729 242 VGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI----VSA---------HR 308 (437)
Q Consensus 242 ~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v----~s~---------hr 308 (437)
...|.++|++.+.+..++-.. .-| -+-|+ +.+.+..+.|.+.|+|+..++ -|. -|
T Consensus 88 y~~s~~~a~~nA~r~~ke~gA-------~aV-KlEGG----~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~~~GGykvqGr 155 (268)
T COG0413 88 YEVSPEQALKNAARLMKEAGA-------DAV-KLEGG----EEMAETIKRLTERGIPVMGHIGLTPQSVNWLGGYKVQGR 155 (268)
T ss_pred cCCCHHHHHHHHHHHHHHhCC-------CEE-EEcCC----HHHHHHHHHHHHcCCceEEEecCChhhhhccCCeeeecC
Confidence 456899999999988875221 123 45666 667888889999999977654 111 23
Q ss_pred ChhHHHHhH---hhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccC
Q 013729 309 TPDLMFSYA---SSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 355 (437)
Q Consensus 309 ~p~~~~~~~---~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 355 (437)
+.+...+.+ +.+++.|+-. ++.-+-...|+..|......|+||.=.
T Consensus 156 ~~~~a~~l~~dA~ale~AGaf~-ivlE~Vp~~lA~~IT~~lsiPtIGIGA 204 (268)
T COG0413 156 TEESAEKLLEDAKALEEAGAFA-LVLECVPAELAKEITEKLSIPTIGIGA 204 (268)
T ss_pred CHHHHHHHHHHHHHHHhcCceE-EEEeccHHHHHHHHHhcCCCCEEeecC
Confidence 444444444 3456666542 223345568888899999999999754
No 423
>PRK13057 putative lipid kinase; Reviewed
Probab=21.12 E-value=3.2e+02 Score=26.19 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccC--CCCCCEEeccCCC
Q 013729 283 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA--RTPLPVIGVPVRA 357 (437)
Q Consensus 283 ~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~--~~~~pVi~~p~~~ 357 (437)
....++.+.|++.|++++.... +.+....++.++. ..+.+++|+ +||.+-+-.++.+ .+..|+--+|..+
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t---~~~~~a~~~~~~~-~~~~d~iiv-~GGDGTv~~v~~~l~~~~~~lgiiP~GT 84 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPA---EDPDDLSEVIEAY-ADGVDLVIV-GGGDGTLNAAAPALVETGLPLGILPLGT 84 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEec---CCHHHHHHHHHHH-HcCCCEEEE-ECchHHHHHHHHHHhcCCCcEEEECCCC
Confidence 4566778889999998776643 3344455565542 346665554 4566555444433 2345655567653
No 424
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=21.01 E-value=6e+02 Score=22.69 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHc-----CCcEEEEEec-CCCChhHHHHhHhhhhhcCCeEEEEeccc--cccccCcccCCCCCCEEeccC
Q 013729 284 VMKDAAKILTMF-----SVPHEVRIVS-AHRTPDLMFSYASSAHERGIEIIIAGAGG--AAHLPGMVAARTPLPVIGVPV 355 (437)
Q Consensus 284 ~~~~~~~~L~~~-----G~~~~~~v~s-~hr~p~~~~~~~~~~~~~g~~v~i~~ag~--~~~l~~~i~~~~~~pVi~~p~ 355 (437)
.++.+++.|++- |-++++-+++ .-+.+.+..+-.++++..|+.+.|.+..- -++..-..+-.+.+||++.-.
T Consensus 30 ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~~ae~f~~~~V~~titvtpcWcy~~etmd~~~~~p~aiwgfng 109 (171)
T PF07881_consen 30 MAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAACAEKFKREGVGVTITVTPCWCYGSETMDMDPNTPKAIWGFNG 109 (171)
T ss_dssp HHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHHHHHHHHCCTEEEEEEEESS---HHHHS---TTS-EEEEE---
T ss_pred HHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHHHHHHHHHcCCCEEEEEEeeeecchhhhccCcCCCccEEeecC
Confidence 455666667665 6666555432 23445556666677778888877765411 123333345567888887643
Q ss_pred CCCCCCChhhHHHhhhC--CCCCceEEE
Q 013729 356 RASALDGLDSLLSIVQM--PRGVPVATV 381 (437)
Q Consensus 356 ~~~~~~g~~~l~~~~~~--~~gvp~~tv 381 (437)
. ..-|.-.|++.+.- --|+|..-+
T Consensus 110 t--erPGaVyLaAa~aa~~Q~Gip~f~I 135 (171)
T PF07881_consen 110 T--ERPGAVYLAAALAAHNQKGIPAFRI 135 (171)
T ss_dssp S--SS-HHHHHHHHHHHHHHCT---EEE
T ss_pred C--CCCcHHHHHHHHHHHhcCCCcceee
Confidence 2 22355444433332 456555533
No 425
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=20.97 E-value=4.5e+02 Score=25.26 Aligned_cols=41 Identities=10% Similarity=-0.001 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHcCCcE-EEEEecCCCChhHHHHhHhhhh
Q 013729 281 DLPVMKDAAKILTMFSVPH-EVRIVSAHRTPDLMFSYASSAH 321 (437)
Q Consensus 281 D~~~~~~~~~~L~~~G~~~-~~~v~s~hr~p~~~~~~~~~~~ 321 (437)
|.+.+.+.++.+.+.|... ..--..-.-+|.++.++++.++
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~ 188 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVL 188 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHH
Confidence 4555555555555555541 1111112344555555554443
No 426
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=20.96 E-value=5.2e+02 Score=26.59 Aligned_cols=83 Identities=6% Similarity=-0.126 Sum_probs=49.3
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
.++++-+.+..+..+.+. ... +. +...|.|+..++.....+.+++..|++.|+.+++... .+. +.+-++
T Consensus 301 avGfa~g~erl~~~l~~~---~~~--~~-~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~--~~~---l~k~~k 369 (430)
T CHL00201 301 AVGCAIGLERLLLIAKDN---IIL--PK-QSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLS--SSN---FHKQIK 369 (430)
T ss_pred eeEEEecHHHHHHHHhcc---ccC--CC-CCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeC--CCC---HHHHHH
Confidence 445666666655544331 111 11 2234645554555677888999999999999887642 233 444555
Q ss_pred hhhhcCCeEEEEec
Q 013729 319 SAHERGIEIIIAGA 332 (437)
Q Consensus 319 ~~~~~g~~v~i~~a 332 (437)
.+...|++.++++.
T Consensus 370 ~A~~~~~~~viiiG 383 (430)
T CHL00201 370 QAGKKRAKACIILG 383 (430)
T ss_pred HHHHcCCCEEEEEe
Confidence 55777888554443
No 427
>TIGR00160 MGSA methylglyoxal synthase. Methylglyoxal synthase (MGS) generates methylglyoxal (MG), a toxic metabolite (that may also be a regulatory metabolite and) that is detoxified, prinicipally, through a pathway involving glutathione and glyoxylase I. Totemeyer, et al. (MUID:98149311) propose that, during a loss of control over carbon flux, with accumulation of phosphorylated sugars and depletion of phosphate, as might happen during a rapid shift to a richer medium, MGS aids the cell by converting some dihydroxyacetone phosphate (DHAP) to MG and phosphate. This is therefore an alternative to triosephosphate isomerase and the remainder of the glycolytic pathway for the disposal of DHAP during the stress of a sudden increase in available sugars.
Probab=20.90 E-value=4.7e+02 Score=22.69 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=62.1
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHH--cCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec---cccccccCcccCC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTM--FSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA---GGAAHLPGMVAAR 345 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~--~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a---g~~~~l~~~i~~~ 345 (437)
++++| .-|+-|+.+.+.+..-+. -++++.+| +| |-+.+. +.-|.+|..... ||.-.+..+|+.+
T Consensus 4 ~IALI-AHD~kK~~l~~f~~~~~~~L~~h~L~AT-----gT---TG~~i~--~~tgL~V~~~~SGplGGDqQIga~Ia~g 72 (143)
T TIGR00160 4 HIALI-AHDKKKQDLVNFVQQHKPLLSQHDLYAT-----GT---TGNLIS--RATGLNINAMLSGPMGGDQQIGALIAEG 72 (143)
T ss_pred eEEEE-ecccchHHHHHHHHHHHHHHcCCCEEEC-----cc---HHHHHH--HHHCCCeEEeccCCccHHHHHHHHHHhC
Confidence 45454 356667777776655443 23455555 44 566665 334677665544 6778899999999
Q ss_pred CCCCEEec--cCC-CCCCCChhhHHHhhhCCCCCceEE
Q 013729 346 TPLPVIGV--PVR-ASALDGLDSLLSIVQMPRGVPVAT 380 (437)
Q Consensus 346 ~~~pVi~~--p~~-~~~~~g~~~l~~~~~~~~gvp~~t 380 (437)
...-||=. |.. ...--.+.+|+ +++.-.+||++|
T Consensus 73 ~id~vIFf~DPl~~~phepDi~aLl-Rlc~v~nIP~At 109 (143)
T TIGR00160 73 KIDAVIFFWDPLNAQPHEPDVKALL-RLCTVWNIPLAT 109 (143)
T ss_pred CCCEEEEecCCCCCCCCCcCHHHHH-HHHHhhCccccc
Confidence 99999976 332 22233556665 556667899996
No 428
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=20.90 E-value=2.1e+02 Score=22.97 Aligned_cols=52 Identities=8% Similarity=0.093 Sum_probs=33.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERG 324 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g 324 (437)
+.| +++-.+-.......+...|+++|++...-+++.+ .++-.+.++++.+.|
T Consensus 6 ~~v-~ltfDdg~~~~~~~~~~~l~~~~i~at~fv~~~~--~~~~~~~l~~l~~~G 57 (123)
T PF01522_consen 6 KSV-ALTFDDGYRDNYDRLLPLLKKYGIPATFFVIGSW--VERYPDQLRELAAAG 57 (123)
T ss_dssp SEE-EEEEESHCHTHHHHHHHHHHHTT--EEEEE-HHH--HHHHHHHHHHHHHTT
T ss_pred CEE-EEEEecCchhhHHHHHHHHHhcccceeeeecccc--cccccccchhHHHHH
Confidence 344 6676777778888899999999999777665432 333445566667777
No 429
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=20.90 E-value=13 Score=36.80 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=19.7
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCcC
Q 013729 7 ESARRAGKQFGYPLMVKSKRLAYDGRG 33 (437)
Q Consensus 7 ~e~~~~a~~~gyPvvvKP~~~g~gg~G 33 (437)
..++.+++.+|+|++.||..++ .+.+
T Consensus 77 g~iqg~le~~giPyvg~gv~~S-a~~m 102 (317)
T COG1181 77 GTIQGLLELLGIPYVGKGVLAS-AGAM 102 (317)
T ss_pred chHHHHHHHhCCCEecCchhhh-hhcc
Confidence 4577888999999999996544 4444
No 430
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=20.89 E-value=2.6e+02 Score=26.95 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecC------CCChhHHH-HhHhhhhhcCCeEEEEecccc--ccccCcccC----CCCCC
Q 013729 283 PVMKDAAKILTMFSVPHEVRIVSA------HRTPDLMF-SYASSAHERGIEIIIAGAGGA--AHLPGMVAA----RTPLP 349 (437)
Q Consensus 283 ~~~~~~~~~L~~~G~~~~~~v~s~------hr~p~~~~-~~~~~~~~~g~~v~i~~ag~~--~~l~~~i~~----~~~~p 349 (437)
+.++.+.+.|+.+|+++...-.-- ..++++-+ ++.+-+.+..++.+++..||. +.|.+.+.- ...++
T Consensus 14 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~rlL~~ld~~~~~~~pK~ 93 (282)
T cd07025 14 ERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGANRLLPYLDYDLIRANPKI 93 (282)
T ss_pred HHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHHHhhhhCCHHHHhhCCeE
Confidence 788888999999999965443111 13444333 344455667789999888764 455554421 23555
Q ss_pred EEe
Q 013729 350 VIG 352 (437)
Q Consensus 350 Vi~ 352 (437)
++|
T Consensus 94 ~iG 96 (282)
T cd07025 94 FVG 96 (282)
T ss_pred EEE
Confidence 555
No 431
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=20.80 E-value=2.6e+02 Score=25.04 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=28.8
Q ss_pred ccccccCccc-CCCCCCEEeccCCC----CCCCCh-hhHHHhhh---CCCCCceEEEEeCC
Q 013729 334 GAAHLPGMVA-ARTPLPVIGVPVRA----SALDGL-DSLLSIVQ---MPRGVPVATVAINN 385 (437)
Q Consensus 334 ~~~~l~~~i~-~~~~~pVi~~p~~~----~~~~g~-~~l~~~~~---~~~gvp~~tv~~~~ 385 (437)
.+++..+-+. +. .+-++-+|.+. ....|+ |.|++++. +..+.|+..+.-+|
T Consensus 66 ~~p~~sg~~~l~~-~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P~mn 125 (174)
T TIGR02699 66 NSPFLAGQLQMGK-YDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMPSDY 125 (174)
T ss_pred CCccccCcccccc-cCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEECcC
Confidence 3445555443 23 35677778762 222344 66776544 37789988666444
No 432
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=20.65 E-value=4.9e+02 Score=24.70 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=24.0
Q ss_pred EEEEecCCCChhHHHHhHhhhhhcCCeEEEEe
Q 013729 300 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 300 ~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
.+-++|--|....+.+.++.++++|++++...
T Consensus 178 ~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT 209 (284)
T PRK11302 178 VVVLISHTGRTKSLVELAQLARENGATVIAIT 209 (284)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEC
Confidence 34455667777778889999999999877654
No 433
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=20.59 E-value=5.8e+02 Score=22.32 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=20.3
Q ss_pred EEecCCCChhHHHHhHhhhhhcCCeEEEEe
Q 013729 302 RIVSAHRTPDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 302 ~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
-++|..|...++.+.++.++++|++++...
T Consensus 106 I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT 135 (177)
T cd05006 106 IGISTSGNSPNVLKALEAAKERGMKTIALT 135 (177)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 344556666667788888888888765543
No 434
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=20.57 E-value=5.9e+02 Score=22.90 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=28.3
Q ss_pred ecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccC
Q 013729 304 VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 355 (437)
Q Consensus 304 ~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 355 (437)
+|--|....+.+.++.++++|++++.......+.|.. ....+|-+|.
T Consensus 118 iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~-----~ad~~l~~~~ 164 (192)
T PRK00414 118 ISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAG-----LADIEIRVPH 164 (192)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH-----hCCEEEEeCC
Confidence 4545555567777888888898876554433333333 2455666665
No 435
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=20.55 E-value=6.3e+02 Score=26.77 Aligned_cols=77 Identities=14% Similarity=0.252 Sum_probs=54.3
Q ss_pred CCCeEEEEEcc---CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccC
Q 013729 268 ILPRIGIIMGS---DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 344 (437)
Q Consensus 268 ~~~~V~ii~gs---~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 344 (437)
.-+.++||.|. ...+..++.+.+.+++.|-++.+-+++ .=+|++++.|. .++++|..+=-...|-+ ..
T Consensus 280 ~A~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vg-kinpaKLaNF~------eID~fV~vaCPr~sidd--~~ 350 (496)
T TIGR00272 280 DAGCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVG-KPNPAKLANFE------DIDIFVLLGCSQSGIID--SN 350 (496)
T ss_pred cCCEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhCCC------CCCEEEEccCCCccccc--Hh
Confidence 33567888774 456888888999999999998888776 78888887774 27877766522233333 23
Q ss_pred CCCCCEEec
Q 013729 345 RTPLPVIGV 353 (437)
Q Consensus 345 ~~~~pVi~~ 353 (437)
.-.+|||..
T Consensus 351 ~F~KPVlTP 359 (496)
T TIGR00272 351 EFYRPIVTP 359 (496)
T ss_pred hCCCceecH
Confidence 467899864
No 436
>PRK10819 transport protein TonB; Provisional
Probab=20.55 E-value=3.1e+02 Score=26.11 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=24.7
Q ss_pred HHHHcCCceEEEEEEEEeCCCcEEEEEEcCC
Q 013729 120 AVSSLEGAGIFAVELFWTNNGQILLNEVAPR 150 (437)
Q Consensus 120 i~~alg~~G~~~ve~~~~~dg~~~viEiNpR 150 (437)
-++.+|..|...++|.++.||.+.=++|...
T Consensus 173 ~A~~~g~eG~V~V~f~I~~~G~V~~v~V~~S 203 (246)
T PRK10819 173 RAQALRIEGQVKVKFDVDEDGRVDNVRILSA 203 (246)
T ss_pred HHHHcCCceEEEEEEEECCCCCEEEEEEecc
Confidence 4566788999999999999998876676443
No 437
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=20.36 E-value=6.3e+02 Score=22.63 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 286 KDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 286 ~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
..+.+.++++|+.+... ..+.+++...+.++++..++++.+|+..
T Consensus 19 ~g~~~~~~~~g~~l~~~--~~~~~~~~~~~~~~~~~~~~~d~ii~~~ 63 (264)
T cd01537 19 KGIEEAAKAAGYQVLLA--NSQNDAEKQLSALENLIARGVDGIIIAP 63 (264)
T ss_pred HHHHHHHHHcCCeEEEE--eCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 33344555566554333 3344555555555555555666555543
No 438
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=20.32 E-value=2.3e+02 Score=20.96 Aligned_cols=40 Identities=25% Similarity=0.232 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHcCCc--EEEEEecCCCChhHHHHhHh
Q 013729 279 DSDLPVMKDAAKILTMFSVP--HEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~--~~~~v~s~hr~p~~~~~~~~ 318 (437)
.+.-+.+..+...|.+++++ ++.--++.....+...+++.
T Consensus 6 ~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~ 47 (84)
T TIGR02180 6 KSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLE 47 (84)
T ss_pred CCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHH
Confidence 45678899999999999988 65554554555555555553
No 439
>PRK14681 hypothetical protein; Provisional
Probab=20.31 E-value=3.2e+02 Score=24.11 Aligned_cols=42 Identities=17% Similarity=0.051 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCc--------eEEEEEEEEeCC-CcEEEEEEcCCCCC
Q 013729 112 LATDVAHKAVSSLEGA--------GIFAVELFWTNN-GQILLNEVAPRPHN 153 (437)
Q Consensus 112 ~i~~~a~~i~~alg~~--------G~~~ve~~~~~d-g~~~viEiNpR~~~ 153 (437)
.-+++|.+.++.-||+ ....||++..++ +.+.|+||-.|.+.
T Consensus 48 ~gE~~Aa~~L~~~Gy~IL~rN~R~~~GEIDIIa~d~~~~LVFVEVKtR~~~ 98 (158)
T PRK14681 48 LGEQYAAAWLEEHGWTTLSRNWHCRYGELDIVALNPEYTIVFVEVKTRRSM 98 (158)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEcCCceEEEEEEEeccCC
Confidence 4466777777776653 346789887753 58999999999874
No 440
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.30 E-value=3.9e+02 Score=25.47 Aligned_cols=75 Identities=11% Similarity=-0.006 Sum_probs=48.7
Q ss_pred cCCHHHHHHHHHHhhccCCcccccCCCCeEE--EEEccCCCHHHHHHHHHHHHHcCCcE-EEEEecCCCChhHHHHhHhh
Q 013729 243 GSSMGLVESRLNSLLKEDSSDCQFKILPRIG--IIMGSDSDLPVMKDAAKILTMFSVPH-EVRIVSAHRTPDLMFSYASS 319 (437)
Q Consensus 243 G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~--ii~gs~sD~~~~~~~~~~L~~~G~~~-~~~v~s~hr~p~~~~~~~~~ 319 (437)
+.+.++.+.++..+....+. ....|. .-.++..|.+.+.+.++.+.++|... ..--..-.-+|+++.++++.
T Consensus 106 ~~~~~~~~~~~~~~i~~a~~-----~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~ 180 (268)
T cd07940 106 KKTREEVLERAVEAVEYAKS-----HGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKK 180 (268)
T ss_pred CCCHHHHHHHHHHHHHHHHH-----cCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHH
Confidence 45677777777776665431 112232 22445578899999999999999872 22222336789999999876
Q ss_pred hhh
Q 013729 320 AHE 322 (437)
Q Consensus 320 ~~~ 322 (437)
+++
T Consensus 181 l~~ 183 (268)
T cd07940 181 LKE 183 (268)
T ss_pred HHH
Confidence 654
No 441
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.24 E-value=90 Score=29.87 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=21.3
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 013729 274 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR 308 (437)
Q Consensus 274 ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr 308 (437)
+|.|+++| ...+++.|.+.|+++.+++.+..+
T Consensus 4 LvlGGT~e---gr~la~~L~~~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 4 LLMGGTVD---SRAIAKGLIAQGIEILVTVTTSEG 35 (256)
T ss_pred EEEechHH---HHHHHHHHHhCCCeEEEEEccCCc
Confidence 55666543 677777777778777777666554
No 442
>PRK07062 short chain dehydrogenase; Provisional
Probab=20.19 E-value=4e+02 Score=24.67 Aligned_cols=27 Identities=15% Similarity=0.390 Sum_probs=15.2
Q ss_pred CChhHHHHhHhhhhh--cCCeEEEEeccc
Q 013729 308 RTPDLMFSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 308 r~p~~~~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
.+++.+.+++++..+ ..++++|-++|.
T Consensus 69 ~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 69 LDEADVAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 345556666554432 246777777764
No 443
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=20.11 E-value=2.9e+02 Score=20.96 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=30.8
Q ss_pred EEEcc-CCCHHHHHHHHHHHHH-cCCcEEEEEecCCCChhHHH
Q 013729 274 IIMGS-DSDLPVMKDAAKILTM-FSVPHEVRIVSAHRTPDLMF 314 (437)
Q Consensus 274 ii~gs-~sD~~~~~~~~~~L~~-~G~~~~~~v~s~hr~p~~~~ 314 (437)
+++|. ......++.+.+.|++ ++++|+..|+.....|+...
T Consensus 7 yv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe 49 (72)
T cd02978 7 YVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAE 49 (72)
T ss_pred EECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHh
Confidence 56665 4556666777777765 58999999999999998554
No 444
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=20.10 E-value=5.9e+02 Score=25.03 Aligned_cols=82 Identities=10% Similarity=0.186 Sum_probs=50.1
Q ss_pred EEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEcc---CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHH
Q 013729 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGS---DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLM 313 (437)
Q Consensus 237 G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs---~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~ 313 (437)
+.+.-...+.+..+++=.....+.. .-..++||.|+ ......++.+.+.+++.|.++.+-+.+ .=+|+++
T Consensus 186 ~~~~~~~~~~~~~l~~R~~~I~ka~------~A~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~-~in~~kL 258 (308)
T TIGR03682 186 GEVEDIEAEIDKFLRVRYARISKAL------DAKKFGILVSTKKGQRRPELAEELKKLLEELGKEALLILLD-NISPDQL 258 (308)
T ss_pred CceEeechhHHHHHHHHHHHHHHHh------hCCeEEEEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeC-CCCHHHH
Confidence 4444444455555543322332211 33567788763 456788888889999999997766555 7777777
Q ss_pred HHhHhhhhhcCCeEEEEec
Q 013729 314 FSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 314 ~~~~~~~~~~g~~v~i~~a 332 (437)
+.| +++++|..|
T Consensus 259 ~nf-------~iD~fV~~a 270 (308)
T TIGR03682 259 RNL-------DFDAYVNTA 270 (308)
T ss_pred hcC-------CcCEEEEcc
Confidence 655 267666544
No 445
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.08 E-value=2.3e+02 Score=30.83 Aligned_cols=120 Identities=19% Similarity=0.248 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcE--EEEEecCCCChhHHHHhHhhhhhcCCeEE------EEecc---ccccccCcccCCCC
Q 013729 279 DSDLPVMKDAAKILTMFSVPH--EVRIVSAHRTPDLMFSYASSAHERGIEII------IAGAG---GAAHLPGMVAARTP 347 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~--~~~v~s~hr~p~~~~~~~~~~~~~g~~v~------i~~ag---~~~~l~~~i~~~~~ 347 (437)
.-|-+.++-.+++|+.---.. -.++ -+-+. .+|.+.+++.|++-. ++.+. ++..|.+++
T Consensus 770 KidP~~l~~W~~ILk~VPnS~Lwllrf-Pa~ge----~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~----- 839 (966)
T KOG4626|consen 770 KIDPSTLQMWANILKRVPNSVLWLLRF-PAVGE----QRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVC----- 839 (966)
T ss_pred cCCHHHHHHHHHHHHhCCcceeEEEec-cccch----HHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhc-----
Confidence 345667777788888754331 2221 11221 344555567787722 11111 223444443
Q ss_pred CCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHccCChHHHHHHHHHHHHhHHH
Q 013729 348 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDD 418 (437)
Q Consensus 348 ~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 418 (437)
.-+|.-.+..-|+|.|| .|+||+|+. +.....=+.+-+..++.-+.+-.|-++.-.+...+
T Consensus 840 ---LDTplcnGhTTg~dvLw------~GvPmVTmp-ge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~ 900 (966)
T KOG4626|consen 840 ---LDTPLCNGHTTGMDVLW------AGVPMVTMP-GETLASRVAASLLTALGLGHLIAKNREEYVQIAVR 900 (966)
T ss_pred ---ccCcCcCCcccchhhhc------cCCceeecc-cHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHH
Confidence 34565334455899888 699999997 22212223333444444444444444433344444
No 446
>smart00642 Aamy Alpha-amylase domain.
Probab=20.05 E-value=2.7e+02 Score=24.54 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.1
Q ss_pred CCCChhHHHHhHhhhhhcCCeEE
Q 013729 306 AHRTPDLMFSYASSAHERGIEII 328 (437)
Q Consensus 306 ~hr~p~~~~~~~~~~~~~g~~v~ 328 (437)
..++.+++.+++++++++|++|+
T Consensus 65 ~~Gt~~d~~~lv~~~h~~Gi~vi 87 (166)
T smart00642 65 RFGTMEDFKELVDAAHARGIKVI 87 (166)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEE
Confidence 45788999999999999999966
No 447
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=20.04 E-value=1.5e+02 Score=30.76 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEE--eCCHHHHHHHHHHhcCCCCcEEEeeccCC
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAV--AKSEEELSSAITALGGFDRGLYVEKWAPF 65 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~--v~~~~el~~~~~~~~~~~~~~lvEe~I~g 65 (437)
+.-++|+...+..+. -+||||..++ ||.|+.+ --+.+|+.+..+++...+..++.|+-+..
T Consensus 352 c~~~~el~~VL~~l~-~lViK~~~~~-gg~~~lvGpa~s~~e~a~~~~~i~a~p~~~IaQ~~~~l 414 (488)
T COG2308 352 CGEPDELEHVLANLS-ELVIKPVEGS-GGYGMLVGPAASKAELAAFAERIKADPENYIAQPVLQL 414 (488)
T ss_pred cCCHHHHHHHHhchh-hheEeeeccC-CCCcceeccccCHHHHHHHHHHHHhChhhhcccccccc
Confidence 455677888877775 4899997754 6666544 35678888887777665555666666653
No 448
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=20.03 E-value=5.1e+02 Score=23.75 Aligned_cols=52 Identities=12% Similarity=0.027 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEeccc
Q 013729 282 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 282 ~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
.+...++.+.+...|.++....+. -.+++.+.+.++..+. ..++++|-++|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 41 QDGANAVADEINKAGGKAIGVAMD-VTNEDAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred hHHHHHHHHHHHhcCceEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 344455555555555443221111 2334445554433221 235666666653
Done!