Query 013729
Match_columns 437
No_of_seqs 368 out of 3511
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:01:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o4v_A Phosphoribosylaminoimid 100.0 1.9E-50 6.5E-55 353.3 15.3 168 269-436 13-180 (183)
2 3lp6_A Phosphoribosylaminoimid 100.0 4.6E-50 1.6E-54 348.8 14.4 166 268-433 6-171 (174)
3 3trh_A Phosphoribosylaminoimid 100.0 1.2E-48 4.2E-53 338.3 15.7 161 268-428 5-167 (169)
4 3ors_A N5-carboxyaminoimidazol 100.0 6.8E-49 2.3E-53 338.5 12.4 159 268-426 2-162 (163)
5 1xmp_A PURE, phosphoribosylami 100.0 2.9E-48 9.9E-53 335.7 14.0 158 269-426 11-170 (170)
6 4b4k_A N5-carboxyaminoimidazol 100.0 1.4E-47 4.9E-52 333.3 15.3 157 269-425 22-180 (181)
7 3kuu_A Phosphoribosylaminoimid 100.0 7.5E-48 2.5E-52 334.3 11.4 158 268-425 11-170 (174)
8 1u11_A PURE (N5-carboxyaminoim 100.0 6.3E-48 2.2E-52 337.1 9.9 160 268-427 20-181 (182)
9 3oow_A Phosphoribosylaminoimid 100.0 1.7E-47 5.8E-52 330.2 11.4 155 270-424 6-162 (166)
10 4grd_A N5-CAIR mutase, phospho 100.0 1.1E-46 3.8E-51 326.1 14.3 155 268-422 11-167 (173)
11 2ywx_A Phosphoribosylaminoimid 100.0 2.3E-46 7.9E-51 320.8 15.0 153 272-428 2-154 (157)
12 3rg8_A Phosphoribosylaminoimid 100.0 2.4E-46 8.2E-51 322.4 14.7 155 270-427 3-158 (159)
13 3k5i_A Phosphoribosyl-aminoimi 100.0 2.1E-40 7.1E-45 336.8 28.2 250 5-261 148-399 (403)
14 3eth_A Phosphoribosylaminoimid 100.0 2.4E-40 8.4E-45 329.9 27.6 240 2-261 99-340 (355)
15 4e4t_A Phosphoribosylaminoimid 100.0 2E-39 6.8E-44 331.0 30.5 253 2-262 153-416 (419)
16 3q2o_A Phosphoribosylaminoimid 100.0 4.2E-39 1.4E-43 325.7 30.1 246 2-259 132-378 (389)
17 3orq_A N5-carboxyaminoimidazol 100.0 6.5E-39 2.2E-43 323.1 25.8 239 3-255 131-371 (377)
18 2h31_A Multifunctional protein 100.0 1.7E-39 5.8E-44 323.4 15.3 159 268-429 264-423 (425)
19 1a9x_A Carbamoyl phosphate syn 100.0 1.5E-37 5.2E-42 349.6 25.0 351 2-395 694-1055(1073)
20 3aw8_A PURK, phosphoribosylami 100.0 5.6E-34 1.9E-38 286.0 30.9 245 2-261 116-361 (369)
21 3ax6_A Phosphoribosylaminoimid 100.0 1.2E-33 4E-38 284.7 25.0 247 3-262 121-370 (380)
22 1kjq_A GART 2, phosphoribosylg 100.0 1.1E-32 3.7E-37 278.5 27.1 251 3-261 134-388 (391)
23 2dwc_A PH0318, 433AA long hypo 100.0 1.6E-32 5.4E-37 281.3 27.0 255 3-262 142-413 (433)
24 2z04_A Phosphoribosylaminoimid 100.0 8.8E-33 3E-37 276.8 23.6 243 6-262 115-357 (365)
25 3jrx_A Acetyl-COA carboxylase 100.0 1.1E-32 3.7E-37 289.9 24.3 286 3-304 230-552 (587)
26 3ouz_A Biotin carboxylase; str 100.0 3.8E-32 1.3E-36 279.5 27.4 280 2-298 141-437 (446)
27 3glk_A Acetyl-COA carboxylase 100.0 1.8E-32 6.3E-37 286.9 23.3 285 3-303 214-535 (540)
28 1ulz_A Pyruvate carboxylase N- 100.0 1.9E-30 6.6E-35 267.1 29.3 287 2-303 136-439 (451)
29 2vpq_A Acetyl-COA carboxylase; 100.0 5.9E-30 2E-34 263.5 32.1 285 2-302 136-439 (451)
30 3u9t_A MCC alpha, methylcroton 100.0 1.3E-31 4.4E-36 287.4 17.9 285 3-302 164-466 (675)
31 3n6r_A Propionyl-COA carboxyla 100.0 4E-31 1.4E-35 283.8 19.2 282 2-299 137-456 (681)
32 2w70_A Biotin carboxylase; lig 100.0 3.1E-29 1.1E-33 258.0 29.7 277 2-295 137-431 (449)
33 1vkz_A Phosphoribosylamine--gl 100.0 4.2E-29 1.4E-33 254.3 25.9 251 2-262 126-401 (412)
34 2dzd_A Pyruvate carboxylase; b 100.0 3.3E-28 1.1E-32 251.1 31.2 274 2-291 142-439 (461)
35 1w96_A ACC, acetyl-coenzyme A 100.0 8.8E-28 3E-32 253.4 31.2 280 3-296 220-542 (554)
36 3vot_A L-amino acid ligase, BL 100.0 1.3E-28 4.6E-33 251.5 23.0 251 3-262 133-413 (425)
37 3hbl_A Pyruvate carboxylase; T 100.0 9.5E-29 3.2E-33 277.7 22.6 285 2-303 140-449 (1150)
38 3va7_A KLLA0E08119P; carboxyla 100.0 1.9E-28 6.5E-33 275.9 24.8 346 3-379 166-530 (1236)
39 2qf7_A Pyruvate carboxylase pr 100.0 1E-28 3.4E-33 278.1 21.8 288 2-305 156-469 (1165)
40 4dim_A Phosphoribosylglycinami 100.0 1.4E-27 4.9E-32 242.0 25.2 250 2-261 129-399 (403)
41 2yw2_A Phosphoribosylamine--gl 100.0 9.5E-27 3.3E-31 237.6 29.6 251 2-262 122-405 (424)
42 2ip4_A PURD, phosphoribosylami 100.0 7.7E-27 2.6E-31 237.8 27.7 254 2-262 121-398 (417)
43 3lp8_A Phosphoribosylamine-gly 100.0 2.4E-26 8.1E-31 236.0 30.1 256 2-262 143-428 (442)
44 2qk4_A Trifunctional purine bi 100.0 1.6E-26 5.6E-31 237.9 28.3 253 2-262 148-434 (452)
45 2yrx_A Phosphoribosylglycinami 99.9 2.8E-26 9.5E-31 236.2 26.9 250 2-262 143-424 (451)
46 1a9x_A Carbamoyl phosphate syn 99.9 2.2E-27 7.6E-32 267.1 19.8 243 2-258 148-403 (1073)
47 3mjf_A Phosphoribosylamine--gl 99.9 8.7E-26 3E-30 231.1 28.5 256 2-262 127-413 (431)
48 2xcl_A Phosphoribosylamine--gl 99.9 1.4E-25 4.8E-30 228.8 28.8 248 2-262 122-403 (422)
49 4ffl_A PYLC; amino acid, biosy 99.9 2E-26 6.9E-31 230.5 18.8 225 16-261 124-356 (363)
50 4fu0_A D-alanine--D-alanine li 99.9 2.5E-22 8.5E-27 200.5 22.5 144 7-154 167-320 (357)
51 3vmm_A Alanine-anticapsin liga 99.9 1.5E-22 5.1E-27 209.3 17.9 181 2-184 159-367 (474)
52 1ehi_A LMDDL2, D-alanine:D-lac 99.9 8.1E-22 2.8E-26 198.2 21.7 164 9-175 166-352 (377)
53 3tqt_A D-alanine--D-alanine li 99.9 2.8E-21 9.7E-26 193.7 21.7 142 9-154 171-324 (372)
54 3k3p_A D-alanine--D-alanine li 99.9 7.4E-22 2.5E-26 198.6 17.1 144 7-154 191-344 (383)
55 2i87_A D-alanine-D-alanine lig 99.9 2E-21 7E-26 194.3 19.9 143 8-155 162-315 (364)
56 1e4e_A Vancomycin/teicoplanin 99.9 3E-21 1E-25 191.5 20.7 138 14-155 162-314 (343)
57 3e5n_A D-alanine-D-alanine lig 99.9 1.3E-21 4.5E-26 197.1 18.2 146 8-155 189-343 (386)
58 3i12_A D-alanine-D-alanine lig 99.9 1.4E-21 4.7E-26 195.7 16.7 144 8-155 170-324 (364)
59 3lwb_A D-alanine--D-alanine li 99.9 3.5E-21 1.2E-25 193.2 19.6 140 11-154 182-338 (373)
60 4eg0_A D-alanine--D-alanine li 99.9 2.3E-21 7.9E-26 190.2 17.5 149 4-155 129-288 (317)
61 3se7_A VANA; alpha-beta struct 99.9 7.4E-21 2.5E-25 189.0 20.2 140 12-155 160-314 (346)
62 2pn1_A Carbamoylphosphate synt 99.9 7.2E-21 2.5E-25 187.4 19.8 163 5-181 135-301 (331)
63 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 7E-21 2.4E-25 185.1 19.3 156 12-174 133-302 (306)
64 2pvp_A D-alanine-D-alanine lig 99.9 2.2E-21 7.6E-26 194.2 14.1 162 8-180 177-350 (367)
65 2fb9_A D-alanine:D-alanine lig 99.9 2.1E-20 7.3E-25 183.9 20.5 138 15-155 148-294 (322)
66 3r5x_A D-alanine--D-alanine li 99.8 2.3E-20 7.9E-25 181.9 14.7 146 5-156 120-273 (307)
67 1uc8_A LYSX, lysine biosynthes 99.8 1.2E-19 4.1E-24 173.8 11.1 161 3-177 109-278 (280)
68 3df7_A Putative ATP-grAsp supe 99.8 1.7E-18 5.9E-23 169.0 16.0 140 15-173 131-271 (305)
69 2r85_A PURP protein PF1517; AT 99.7 2.8E-17 9.4E-22 161.6 18.0 137 15-153 124-290 (334)
70 2r7k_A 5-formaminoimidazole-4- 99.7 1.7E-17 5.9E-22 165.1 14.4 136 16-153 149-317 (361)
71 2pbz_A Hypothetical protein; N 99.6 2.6E-16 8.8E-21 153.9 5.7 131 15-153 123-271 (320)
72 1wr2_A Hypothetical protein PH 99.6 1.3E-15 4.5E-20 143.2 5.2 148 2-152 41-218 (238)
73 1gsa_A Glutathione synthetase; 99.5 5E-14 1.7E-18 136.8 13.7 158 3-175 141-310 (316)
74 1z2n_X Inositol 1,3,4-trisphos 99.5 1.1E-13 3.7E-18 135.5 12.3 139 3-156 119-304 (324)
75 3ln6_A Glutathione biosynthesi 99.5 4.6E-14 1.6E-18 152.5 7.6 164 3-174 505-746 (750)
76 3ln7_A Glutathione biosynthesi 99.4 2.7E-13 9.4E-18 146.1 10.9 165 2-174 509-752 (757)
77 1i7n_A Synapsin II; synapse, p 99.4 1E-12 3.4E-17 127.6 10.5 134 11-153 146-284 (309)
78 2p0a_A Synapsin-3, synapsin II 99.4 4.3E-12 1.5E-16 124.6 13.5 153 12-175 164-321 (344)
79 1pk8_A RAT synapsin I; ATP bin 99.4 4.6E-12 1.6E-16 126.7 13.8 133 12-153 259-396 (422)
80 2yvq_A Carbamoyl-phosphate syn 99.3 3.2E-13 1.1E-17 116.6 0.7 120 240-380 1-130 (143)
81 2q7d_A Inositol-tetrakisphosph 99.2 5.4E-11 1.8E-15 117.6 13.6 136 7-156 150-316 (346)
82 2cqy_A Propionyl-COA carboxyla 99.2 2.1E-11 7E-16 99.5 6.3 72 2-74 30-107 (108)
83 2nu8_B SCS-beta, succinyl-COA 99.1 6.5E-11 2.2E-15 118.6 8.0 141 2-152 24-203 (388)
84 2fp4_B Succinyl-COA ligase [GD 99.0 5.5E-10 1.9E-14 112.0 8.2 141 2-152 24-210 (395)
85 1b93_A Protein (methylglyoxal 98.8 1.3E-09 4.6E-14 93.8 1.6 111 268-394 10-130 (152)
86 1vmd_A MGS, methylglyoxal synt 98.7 1.6E-09 5.6E-14 95.1 0.4 110 268-393 26-145 (178)
87 2xw6_A MGS, methylglyoxal synt 98.6 2.8E-09 9.6E-14 89.9 -1.0 108 271-394 5-122 (134)
88 3t7a_A Inositol pyrophosphate 98.4 1.9E-07 6.7E-12 88.8 6.0 130 14-153 142-292 (330)
89 3ufx_B Succinyl-COA synthetase 98.4 9.3E-07 3.2E-11 88.6 10.2 76 2-78 24-109 (397)
90 3tig_A TTL protein; ATP-grAsp, 98.2 2.6E-05 8.7E-10 77.2 14.9 152 17-177 147-360 (380)
91 3mwd_A ATP-citrate synthase; A 96.8 0.0037 1.3E-07 62.8 9.3 81 4-85 38-135 (425)
92 3pff_A ATP-citrate synthase; p 95.8 0.017 5.9E-07 62.5 8.2 81 4-85 38-135 (829)
93 3uhj_A Probable glycerol dehyd 93.6 0.046 1.6E-06 54.3 4.1 86 270-356 53-139 (387)
94 1jq5_A Glycerol dehydrogenase; 92.3 0.056 1.9E-06 53.3 2.5 87 270-356 32-119 (370)
95 3ce9_A Glycerol dehydrogenase; 91.4 0.13 4.3E-06 50.4 3.9 85 271-356 36-121 (354)
96 2q5c_A NTRC family transcripti 91.4 1.9 6.6E-05 38.2 11.4 128 270-413 5-140 (196)
97 3okf_A 3-dehydroquinate syntha 91.0 0.47 1.6E-05 46.9 7.6 87 270-356 63-158 (390)
98 1ta9_A Glycerol dehydrogenase; 90.7 0.14 4.9E-06 51.8 3.6 85 271-356 93-178 (450)
99 3bfj_A 1,3-propanediol oxidore 90.5 0.16 5.6E-06 50.2 3.8 86 271-356 35-143 (387)
100 1o2d_A Alcohol dehydrogenase, 90.2 0.36 1.2E-05 47.4 6.0 87 270-356 41-149 (371)
101 3ox4_A Alcohol dehydrogenase 2 89.7 0.25 8.5E-06 48.9 4.4 87 270-356 32-139 (383)
102 3hl0_A Maleylacetate reductase 89.0 0.12 4E-06 50.7 1.3 85 271-357 36-121 (353)
103 1sg6_A Pentafunctional AROM po 88.9 0.32 1.1E-05 48.2 4.5 87 270-356 37-140 (393)
104 3jzd_A Iron-containing alcohol 87.8 0.15 5.2E-06 50.0 1.2 84 271-356 38-122 (358)
105 1vlj_A NADH-dependent butanol 86.6 0.57 2E-05 46.6 4.7 85 271-356 45-152 (407)
106 1rrm_A Lactaldehyde reductase; 86.0 0.27 9.1E-06 48.6 1.9 86 271-356 33-141 (386)
107 2pju_A Propionate catabolism o 85.1 14 0.00047 33.4 12.8 113 289-413 29-152 (225)
108 3n6x_A Putative glutathionylsp 81.9 1.6 5.4E-05 44.2 5.5 61 3-65 349-411 (474)
109 3qbe_A 3-dehydroquinate syntha 81.8 1.1 3.8E-05 43.9 4.3 86 270-356 44-138 (368)
110 1g8m_A Aicar transformylase-IM 79.6 0.89 3E-05 46.7 2.8 50 269-332 5-54 (593)
111 1xah_A Sadhqs, 3-dehydroquinat 78.8 1.2 4E-05 43.4 3.3 84 271-356 33-125 (354)
112 1oj7_A Hypothetical oxidoreduc 78.5 1.1 3.6E-05 44.6 3.0 84 270-356 51-160 (408)
113 2gru_A 2-deoxy-scyllo-inosose 77.8 3.7 0.00013 40.1 6.6 86 270-356 35-129 (368)
114 1v95_A Nuclear receptor coacti 77.3 4.9 0.00017 33.1 6.2 60 270-332 9-68 (130)
115 4ehi_A Bifunctional purine bio 77.1 1.3 4.3E-05 45.0 3.0 49 270-332 25-73 (534)
116 1ujn_A Dehydroquinate synthase 77.0 1.4 4.7E-05 42.9 3.2 82 271-356 30-119 (348)
117 3zzm_A Bifunctional purine bio 71.4 1.8 6.3E-05 43.8 2.5 47 273-332 13-59 (523)
118 4fn4_A Short chain dehydrogena 70.9 12 0.00039 34.5 7.8 56 279-335 38-95 (254)
119 3iv7_A Alcohol dehydrogenase I 70.2 1.1 3.8E-05 43.8 0.6 52 305-356 69-121 (364)
120 1kq3_A Glycerol dehydrogenase; 69.1 0.43 1.5E-05 46.9 -2.6 84 270-356 42-127 (376)
121 1x60_A Sporulation-specific N- 67.9 18 0.00063 26.3 7.0 57 272-329 10-75 (79)
122 3clh_A 3-dehydroquinate syntha 63.9 0.82 2.8E-05 44.4 -1.8 50 307-356 65-120 (343)
123 1mjh_A Protein (ATP-binding do 62.3 27 0.00092 28.6 7.9 68 284-355 84-159 (162)
124 4g81_D Putative hexonate dehyd 59.7 16 0.00053 33.6 6.3 55 279-334 40-96 (255)
125 3rf7_A Iron-containing alcohol 58.2 3.9 0.00013 40.1 2.0 70 287-356 68-160 (375)
126 3l6u_A ABC-type sugar transpor 57.8 88 0.003 28.0 11.3 84 268-353 7-95 (293)
127 3idf_A USP-like protein; unive 57.0 38 0.0013 26.7 7.7 55 284-345 67-121 (138)
128 1zcz_A Bifunctional purine bio 56.4 5.4 0.00018 39.6 2.6 47 273-332 16-62 (464)
129 1lyp_A CAP18; lipopolysacchari 54.9 26 0.0009 20.3 4.2 24 404-427 2-25 (32)
130 3kke_A LACI family transcripti 53.0 1.3E+02 0.0045 27.2 13.2 82 268-353 14-100 (303)
131 3s3t_A Nucleotide-binding prot 52.5 23 0.00078 28.4 5.6 55 284-342 70-126 (146)
132 1uta_A FTSN, MSGA, cell divisi 52.1 11 0.00039 27.7 3.3 53 274-327 12-73 (81)
133 1m3s_A Hypothetical protein YC 51.8 33 0.0011 29.1 6.8 80 271-356 39-133 (186)
134 1jeo_A MJ1247, hypothetical pr 50.9 38 0.0013 28.5 7.0 60 271-331 42-116 (180)
135 3dlo_A Universal stress protei 50.6 48 0.0016 27.1 7.5 56 284-341 79-134 (155)
136 3m9w_A D-xylose-binding peripl 48.9 1.5E+02 0.0052 26.7 14.4 82 270-353 3-89 (313)
137 4fs3_A Enoyl-[acyl-carrier-pro 48.9 26 0.00088 31.8 5.9 52 282-334 42-96 (256)
138 1qpz_A PURA, protein (purine n 48.6 53 0.0018 30.6 8.3 84 268-353 57-144 (340)
139 3l49_A ABC sugar (ribose) tran 47.6 96 0.0033 27.7 9.8 63 268-332 4-69 (291)
140 3lft_A Uncharacterized protein 46.5 78 0.0027 28.7 9.0 82 270-354 3-90 (295)
141 2dum_A Hypothetical protein PH 46.3 40 0.0014 27.8 6.4 68 285-356 80-157 (170)
142 3egc_A Putative ribose operon 46.3 1.6E+02 0.0055 26.2 12.5 83 268-353 7-93 (291)
143 3loq_A Universal stress protei 46.1 77 0.0026 28.8 8.9 82 271-356 200-291 (294)
144 3jvd_A Transcriptional regulat 45.5 1.8E+02 0.0063 26.7 11.7 123 268-416 63-201 (333)
145 3a9s_A D-arabinose isomerase; 45.3 1.6E+02 0.0054 30.5 11.6 85 296-382 55-144 (595)
146 2gm3_A Unknown protein; AT3G01 44.3 40 0.0014 28.0 6.0 68 284-355 88-163 (175)
147 3sho_A Transcriptional regulat 44.3 77 0.0026 26.7 8.0 32 300-331 90-121 (187)
148 3o74_A Fructose transport syst 44.1 1.5E+02 0.0052 25.9 10.5 61 270-332 3-66 (272)
149 3h7a_A Short chain dehydrogena 43.4 66 0.0022 28.8 7.8 55 280-335 39-94 (252)
150 4b4t_W RPN10, 26S proteasome r 43.2 1.4E+02 0.0047 27.5 9.9 75 243-320 84-161 (268)
151 3tla_A MCCF; serine protease, 43.2 48 0.0016 32.2 7.0 85 268-352 42-143 (371)
152 3kjx_A Transcriptional regulat 43.1 1.2E+02 0.004 28.1 9.9 84 247-332 39-132 (344)
153 4g85_A Histidine-tRNA ligase, 43.0 1E+02 0.0036 31.0 9.9 59 269-331 419-477 (517)
154 3gyb_A Transcriptional regulat 42.3 1.7E+02 0.0058 25.8 10.5 79 268-353 4-85 (280)
155 3brs_A Periplasmic binding pro 42.0 1.7E+02 0.0058 25.9 10.5 85 269-353 5-96 (289)
156 1jx6_A LUXP protein; protein-l 41.7 1.5E+02 0.0053 27.2 10.4 85 247-331 16-111 (342)
157 3sju_A Keto reductase; short-c 41.3 67 0.0023 29.2 7.6 85 238-335 26-112 (279)
158 3ucx_A Short chain dehydrogena 41.0 68 0.0023 28.8 7.5 56 279-335 42-99 (264)
159 1tq8_A Hypothetical protein RV 40.5 45 0.0015 27.6 5.7 70 283-356 81-159 (163)
160 3sr3_A Microcin immunity prote 40.1 52 0.0018 31.4 6.7 85 268-352 12-113 (336)
161 3gbv_A Putative LACI-family tr 40.1 1.2E+02 0.0039 27.3 9.0 86 268-353 7-100 (304)
162 3s99_A Basic membrane lipoprot 40.0 2.5E+02 0.0086 26.7 12.2 130 270-415 27-174 (356)
163 4h1h_A LMO1638 protein; MCCF-l 39.9 67 0.0023 30.4 7.4 84 268-352 11-112 (327)
164 3rss_A Putative uncharacterize 39.6 60 0.002 32.9 7.4 58 269-327 52-109 (502)
165 3ff4_A Uncharacterized protein 39.5 48 0.0017 26.6 5.5 31 269-299 4-34 (122)
166 4e5s_A MCCFLIKE protein (BA_56 39.4 69 0.0024 30.5 7.4 85 268-352 11-112 (331)
167 3qiv_A Short-chain dehydrogena 39.0 1E+02 0.0034 27.2 8.3 83 239-334 12-96 (253)
168 3nsx_A Alpha-glucosidase; stru 38.6 2.6E+02 0.009 29.2 12.4 93 235-330 132-237 (666)
169 2qv7_A Diacylglycerol kinase D 38.4 21 0.00073 33.9 3.7 71 283-357 42-116 (337)
170 3tjr_A Short chain dehydrogena 38.3 83 0.0028 29.0 7.8 85 238-335 33-119 (301)
171 3o1i_D Periplasmic protein TOR 38.0 1.8E+02 0.0061 25.9 10.1 84 268-353 4-93 (304)
172 3lkv_A Uncharacterized conserv 38.0 42 0.0014 31.1 5.6 65 288-354 29-97 (302)
173 3hs3_A Ribose operon repressor 38.0 2.1E+02 0.0073 25.3 12.4 79 268-353 9-91 (277)
174 3g1w_A Sugar ABC transporter; 37.9 2E+02 0.0067 25.8 10.3 62 270-332 5-69 (305)
175 2g3m_A Maltase, alpha-glucosid 37.4 3.4E+02 0.012 28.4 13.1 95 234-331 143-250 (693)
176 3ksu_A 3-oxoacyl-acyl carrier 37.0 2.2E+02 0.0074 25.3 10.3 63 271-334 37-101 (262)
177 2jah_A Clavulanic acid dehydro 36.7 1.1E+02 0.0038 27.0 8.1 85 238-335 9-95 (247)
178 3u7r_A NADPH-dependent FMN red 36.2 48 0.0016 28.8 5.3 93 271-365 4-122 (190)
179 3miz_A Putative transcriptiona 36.0 2.4E+02 0.0081 25.2 15.4 83 268-353 12-98 (301)
180 1vim_A Hypothetical protein AF 35.9 69 0.0024 27.6 6.4 81 271-357 49-144 (200)
181 3tfo_A Putative 3-oxoacyl-(acy 35.7 86 0.003 28.3 7.3 85 238-335 6-92 (264)
182 4fgs_A Probable dehydrogenase 35.0 71 0.0024 29.4 6.6 83 234-334 29-113 (273)
183 1v9c_A Precorrin-8X methyl mut 35.0 70 0.0024 28.5 6.1 95 279-382 72-184 (218)
184 2pju_A Propionate catabolism o 34.8 1.6E+02 0.0053 26.3 8.6 77 239-331 85-161 (225)
185 3bil_A Probable LACI-family tr 34.8 2.1E+02 0.0073 26.4 10.3 62 269-332 66-130 (348)
186 3v8b_A Putative dehydrogenase, 34.8 1E+02 0.0036 28.0 7.8 84 239-335 31-116 (283)
187 1ae1_A Tropinone reductase-I; 34.2 1.1E+02 0.0038 27.5 7.8 85 238-335 23-110 (273)
188 3fxa_A SIS domain protein; str 34.0 81 0.0028 27.0 6.5 59 271-330 47-125 (201)
189 2ae2_A Protein (tropinone redu 33.8 1.2E+02 0.0041 26.9 7.9 83 239-334 12-97 (260)
190 1wu7_A Histidyl-tRNA synthetas 33.7 1.6E+02 0.0054 28.8 9.4 58 270-332 333-390 (434)
191 1zem_A Xylitol dehydrogenase; 33.6 1.3E+02 0.0045 26.8 8.2 54 280-334 39-94 (262)
192 3lyl_A 3-oxoacyl-(acyl-carrier 33.4 98 0.0034 27.2 7.2 54 280-334 37-92 (247)
193 3imf_A Short chain dehydrogena 33.2 89 0.0031 27.9 6.9 54 280-334 38-93 (257)
194 3l4y_A Maltase-glucoamylase, i 33.1 2.5E+02 0.0084 30.5 11.3 95 233-330 257-364 (875)
195 2prs_A High-affinity zinc upta 32.8 82 0.0028 29.0 6.7 62 292-353 188-252 (284)
196 3k4h_A Putative transcriptiona 32.8 1.7E+02 0.0057 26.0 8.8 63 268-332 7-77 (292)
197 2x5n_A SPRPN10, 26S proteasome 32.7 2.3E+02 0.008 24.2 9.7 73 243-318 83-157 (192)
198 3l9w_A Glutathione-regulated p 32.7 1.8E+02 0.0062 28.4 9.5 29 390-418 131-159 (413)
199 3gaf_A 7-alpha-hydroxysteroid 32.5 1E+02 0.0035 27.4 7.2 55 280-335 44-100 (256)
200 4fn4_A Short chain dehydrogena 32.4 2.8E+02 0.0095 25.0 11.5 58 237-304 32-90 (254)
201 4g84_A Histidine--tRNA ligase, 32.4 1.4E+02 0.0049 29.2 8.9 58 270-331 367-424 (464)
202 1dbq_A Purine repressor; trans 32.4 1E+02 0.0034 27.5 7.2 84 268-353 6-93 (289)
203 3rkr_A Short chain oxidoreduct 32.3 1.2E+02 0.0041 27.0 7.7 84 238-334 31-116 (262)
204 3fg9_A Protein of universal st 32.0 1.3E+02 0.0043 24.2 7.1 53 283-338 79-133 (156)
205 3oid_A Enoyl-[acyl-carrier-pro 32.0 1.5E+02 0.0052 26.4 8.3 55 279-334 36-92 (258)
206 3msz_A Glutaredoxin 1; alpha-b 31.7 67 0.0023 22.9 4.9 39 279-317 11-49 (89)
207 2rhc_B Actinorhodin polyketide 31.7 1.3E+02 0.0044 27.1 7.8 84 238-334 24-109 (277)
208 3apt_A Methylenetetrahydrofola 31.6 2.1E+02 0.0071 26.7 9.3 53 282-334 57-109 (310)
209 3h5o_A Transcriptional regulat 31.3 1.7E+02 0.0058 26.9 8.8 63 268-332 61-126 (339)
210 3rot_A ABC sugar transporter, 31.2 2.5E+02 0.0086 25.0 9.8 61 270-332 4-69 (297)
211 3iwt_A 178AA long hypothetical 31.2 2.3E+02 0.0078 23.7 8.9 71 268-341 14-98 (178)
212 4ibo_A Gluconate dehydrogenase 31.1 79 0.0027 28.7 6.2 84 238-334 28-113 (271)
213 2bon_A Lipid kinase; DAG kinas 31.0 1.1E+02 0.0038 28.7 7.4 71 283-357 44-120 (332)
214 1zl0_A Hypothetical protein PA 30.6 1.2E+02 0.004 28.6 7.3 101 268-376 16-131 (311)
215 3ksm_A ABC-type sugar transpor 30.5 1.8E+02 0.0061 25.5 8.5 46 286-331 20-66 (276)
216 3pk0_A Short-chain dehydrogena 30.3 1.1E+02 0.0038 27.3 7.1 85 238-335 12-99 (262)
217 2pjk_A 178AA long hypothetical 30.3 2.5E+02 0.0086 23.8 9.2 84 286-377 43-131 (178)
218 3r1i_A Short-chain type dehydr 30.2 96 0.0033 28.1 6.7 85 238-335 34-120 (276)
219 3s40_A Diacylglycerol kinase; 30.1 63 0.0021 30.1 5.4 71 282-357 25-99 (304)
220 2qh8_A Uncharacterized protein 30.0 1.2E+02 0.004 27.6 7.3 62 270-332 9-77 (302)
221 3tox_A Short chain dehydrogena 29.9 98 0.0034 28.2 6.7 55 279-334 39-95 (280)
222 3lpp_A Sucrase-isomaltase; gly 29.8 2.7E+02 0.0092 30.3 10.9 95 233-330 285-392 (898)
223 3t7c_A Carveol dehydrogenase; 29.7 1.9E+02 0.0066 26.3 8.8 54 281-335 73-128 (299)
224 3uug_A Multiple sugar-binding 29.5 3.2E+02 0.011 24.7 10.7 62 269-332 3-67 (330)
225 3l77_A Short-chain alcohol deh 29.5 1.6E+02 0.0054 25.5 7.8 54 280-334 34-90 (235)
226 2q5c_A NTRC family transcripti 29.4 1.5E+02 0.005 25.7 7.4 77 239-331 73-149 (196)
227 1jzt_A Hypothetical 27.5 kDa p 29.3 1.7E+02 0.0058 26.4 8.0 58 270-327 59-116 (246)
228 1leh_A Leucine dehydrogenase; 28.8 3E+02 0.01 26.3 10.1 139 268-422 172-323 (364)
229 2zat_A Dehydrogenase/reductase 28.6 1.3E+02 0.0045 26.6 7.2 54 280-334 46-101 (260)
230 3hgm_A Universal stress protei 28.5 1.2E+02 0.0042 23.7 6.4 55 284-342 71-128 (147)
231 2xhz_A KDSD, YRBH, arabinose 5 28.4 1.2E+02 0.0041 25.3 6.5 52 300-356 99-150 (183)
232 1geg_A Acetoin reductase; SDR 28.0 1.5E+02 0.005 26.3 7.4 84 238-334 4-89 (256)
233 2qq5_A DHRS1, dehydrogenase/re 28.0 1.3E+02 0.0043 26.8 7.0 82 239-333 8-92 (260)
234 3dbi_A Sugar-binding transcrip 27.8 2E+02 0.007 26.3 8.7 63 268-332 60-127 (338)
235 4da9_A Short-chain dehydrogena 27.7 2.3E+02 0.008 25.5 8.9 85 238-334 31-117 (280)
236 3etn_A Putative phosphosugar i 27.7 1E+02 0.0034 27.1 6.1 60 270-330 60-141 (220)
237 1byk_A Protein (trehalose oper 27.5 3E+02 0.01 23.7 10.8 80 270-353 3-85 (255)
238 3h75_A Periplasmic sugar-bindi 27.4 1.5E+02 0.0053 27.3 7.8 82 269-353 3-92 (350)
239 1evl_A Threonyl-tRNA synthetas 27.3 3.7E+02 0.013 25.7 10.7 58 270-332 299-356 (401)
240 3ftp_A 3-oxoacyl-[acyl-carrier 27.2 97 0.0033 28.0 6.1 84 238-334 30-115 (270)
241 2l82_A Designed protein OR32; 27.1 1.4E+02 0.0048 23.4 5.9 77 244-330 59-135 (162)
242 4imr_A 3-oxoacyl-(acyl-carrier 27.0 97 0.0033 28.1 6.0 83 239-334 36-119 (275)
243 1y88_A Hypothetical protein AF 27.0 1.1E+02 0.0038 26.8 6.0 41 111-151 18-69 (199)
244 2dgd_A 223AA long hypothetical 26.8 95 0.0033 27.2 5.8 57 270-328 109-175 (223)
245 3svt_A Short-chain type dehydr 26.6 1.8E+02 0.0063 26.0 8.0 84 238-334 13-101 (281)
246 4eys_A MCCC family protein; MC 26.5 91 0.0031 29.8 5.9 82 270-352 6-110 (346)
247 3cxt_A Dehydrogenase with diff 26.3 1.4E+02 0.005 27.2 7.2 85 238-335 36-122 (291)
248 3k9c_A Transcriptional regulat 26.3 2.7E+02 0.0091 24.8 9.0 80 268-353 11-94 (289)
249 1x92_A APC5045, phosphoheptose 26.2 2.5E+02 0.0084 23.7 8.3 53 301-355 117-169 (199)
250 1yb1_A 17-beta-hydroxysteroid 26.1 2E+02 0.007 25.6 8.1 84 238-334 33-118 (272)
251 1vl8_A Gluconate 5-dehydrogena 26.1 1.6E+02 0.0056 26.3 7.4 84 238-334 23-109 (267)
252 2ftp_A Hydroxymethylglutaryl-C 26.0 3.6E+02 0.012 24.8 10.0 48 283-330 124-178 (302)
253 2xed_A Putative maleate isomer 26.0 1.3E+02 0.0045 27.5 6.7 58 270-329 147-212 (273)
254 3oec_A Carveol dehydrogenase ( 25.8 2.3E+02 0.0078 26.1 8.6 54 281-335 91-146 (317)
255 4ba0_A Alpha-glucosidase, puta 25.7 3.1E+02 0.011 29.5 10.4 94 234-330 230-341 (817)
256 3ai3_A NADPH-sorbose reductase 25.6 1.9E+02 0.0066 25.5 7.8 85 238-335 9-96 (263)
257 3c3k_A Alanine racemase; struc 25.5 1.5E+02 0.005 26.5 7.0 82 268-353 7-92 (285)
258 4e3z_A Putative oxidoreductase 25.4 2.3E+02 0.0079 25.2 8.4 86 238-335 28-115 (272)
259 1iy8_A Levodione reductase; ox 25.3 1.7E+02 0.0059 26.0 7.4 85 238-335 15-103 (267)
260 3e3m_A Transcriptional regulat 25.3 2.3E+02 0.0077 26.3 8.5 63 268-332 69-134 (355)
261 3awd_A GOX2181, putative polyo 25.2 2E+02 0.0068 25.2 7.8 85 238-335 15-101 (260)
262 2l69_A Rossmann 2X3 fold prote 25.1 2.3E+02 0.0077 21.5 10.0 49 280-330 59-107 (134)
263 4egf_A L-xylulose reductase; s 24.7 1.4E+02 0.0049 26.6 6.7 85 238-335 22-109 (266)
264 2uvd_A 3-oxoacyl-(acyl-carrier 24.6 1.9E+02 0.0064 25.4 7.4 85 239-335 7-93 (246)
265 4hp8_A 2-deoxy-D-gluconate 3-d 24.6 3.1E+02 0.011 24.6 8.9 56 269-332 8-63 (247)
266 2b4q_A Rhamnolipids biosynthes 24.4 2E+02 0.0068 25.9 7.7 83 238-334 31-115 (276)
267 3olq_A Universal stress protei 24.4 1.2E+02 0.0042 27.6 6.4 69 285-356 75-151 (319)
268 3pgx_A Carveol dehydrogenase; 24.4 2.1E+02 0.0071 25.7 7.8 54 281-335 61-116 (280)
269 3ioy_A Short-chain dehydrogena 24.4 1.7E+02 0.0058 27.1 7.4 84 238-334 10-97 (319)
270 3ixl_A Amdase, arylmalonate de 24.4 3.7E+02 0.013 23.8 10.4 60 270-332 118-189 (240)
271 3a28_C L-2.3-butanediol dehydr 24.2 1.8E+02 0.0063 25.6 7.4 86 239-335 5-92 (258)
272 3lt0_A Enoyl-ACP reductase; tr 24.0 87 0.003 29.3 5.2 32 271-302 3-34 (329)
273 2fvy_A D-galactose-binding per 24.0 2.1E+02 0.0072 25.5 7.8 61 271-332 4-67 (309)
274 2vob_A Trypanothione synthetas 23.9 40 0.0014 35.4 2.9 44 19-65 544-588 (652)
275 2x7x_A Sensor protein; transfe 23.8 3E+02 0.01 25.0 9.0 60 269-331 6-69 (325)
276 1htt_A Histidyl-tRNA synthetas 23.8 1.6E+02 0.0056 28.5 7.4 58 270-332 328-387 (423)
277 2yva_A DNAA initiator-associat 23.7 3.2E+02 0.011 22.8 9.9 55 300-356 112-166 (196)
278 3is3_A 17BETA-hydroxysteroid d 23.7 2.5E+02 0.0087 24.9 8.3 85 239-335 21-107 (270)
279 1xq1_A Putative tropinone redu 23.7 1.7E+02 0.0059 25.8 7.1 84 238-334 16-102 (266)
280 2i0f_A 6,7-dimethyl-8-ribityll 23.6 60 0.0021 27.4 3.5 62 270-331 13-80 (157)
281 4e51_A Histidine--tRNA ligase; 23.6 1.7E+02 0.0059 29.0 7.6 86 239-332 329-416 (467)
282 2iks_A DNA-binding transcripti 23.5 3.8E+02 0.013 23.6 9.6 63 268-332 19-84 (293)
283 3top_A Maltase-glucoamylase, i 23.4 2.4E+02 0.0082 30.8 9.0 95 233-330 258-364 (908)
284 3g80_A Protein B2; RNA-binding 23.3 1.8E+02 0.0062 21.8 5.5 27 387-413 41-67 (97)
285 3d3k_A Enhancer of mRNA-decapp 23.1 1.6E+02 0.0056 26.7 6.7 58 270-327 86-143 (259)
286 2lqo_A Putative glutaredoxin R 22.9 1.5E+02 0.005 22.2 5.4 38 278-317 10-47 (92)
287 3tsc_A Putative oxidoreductase 22.9 2.3E+02 0.0079 25.3 7.8 54 281-335 57-112 (277)
288 3uh0_A Threonyl-tRNA synthetas 22.9 3E+02 0.01 27.2 9.2 88 236-332 315-420 (460)
289 3i1j_A Oxidoreductase, short c 22.9 1.3E+02 0.0043 26.4 5.9 55 280-334 46-104 (247)
290 1ydn_A Hydroxymethylglutaryl-C 22.8 3.3E+02 0.011 24.8 9.0 12 141-152 4-15 (295)
291 1qxo_A Chorismate synthase; be 22.7 1.3E+02 0.0045 29.2 6.1 63 312-391 199-266 (388)
292 4h15_A Short chain alcohol deh 22.7 2.3E+02 0.0078 25.5 7.7 65 269-335 10-89 (261)
293 2yzt_A Putative uncharacterize 22.7 60 0.002 22.9 2.8 20 240-259 27-46 (67)
294 3v2g_A 3-oxoacyl-[acyl-carrier 22.5 3E+02 0.01 24.6 8.5 85 238-334 33-119 (271)
295 3fwz_A Inner membrane protein 22.5 1.3E+02 0.0045 23.9 5.4 50 269-330 7-56 (140)
296 3ksu_A 3-oxoacyl-acyl carrier 22.4 2.1E+02 0.0072 25.4 7.4 61 269-332 10-70 (262)
297 1sq1_A Chorismate synthase; st 22.4 1.3E+02 0.0046 28.9 6.0 64 311-391 187-253 (370)
298 3uve_A Carveol dehydrogenase ( 22.3 2.4E+02 0.0082 25.3 7.8 58 269-332 10-83 (286)
299 2h3h_A Sugar ABC transporter, 22.2 3.3E+02 0.011 24.5 8.8 46 286-332 20-65 (313)
300 4b79_A PA4098, probable short- 22.2 3.1E+02 0.011 24.5 8.3 62 270-335 11-89 (242)
301 2hsg_A Glucose-resistance amyl 22.2 2.8E+02 0.0094 25.3 8.4 104 247-353 31-145 (332)
302 3rih_A Short chain dehydrogena 22.1 1.8E+02 0.006 26.6 6.9 85 238-335 43-130 (293)
303 3osu_A 3-oxoacyl-[acyl-carrier 22.0 2.8E+02 0.0095 24.2 8.1 55 280-335 37-93 (246)
304 3fst_A 5,10-methylenetetrahydr 21.9 2.1E+02 0.0073 26.7 7.4 40 293-332 79-118 (304)
305 3cx3_A Lipoprotein; zinc-bindi 21.9 1.5E+02 0.0052 27.2 6.3 64 291-354 190-256 (284)
306 1xkq_A Short-chain reductase f 21.9 1.9E+02 0.0065 25.9 7.0 84 239-335 9-97 (280)
307 2z08_A Universal stress protei 21.8 1.8E+02 0.0063 22.5 6.2 43 295-341 73-116 (137)
308 1qe0_A Histidyl-tRNA synthetas 21.7 1.7E+02 0.0058 28.3 7.0 84 240-332 304-387 (420)
309 2xvl_A Alpha-xylosidase, putat 21.7 4.2E+02 0.014 29.3 10.6 94 235-331 402-510 (1020)
310 1nvm_A HOA, 4-hydroxy-2-oxoval 21.7 1.8E+02 0.0062 27.5 7.0 45 277-322 143-189 (345)
311 4gqr_A Pancreatic alpha-amylas 21.6 61 0.0021 31.9 3.7 27 303-329 69-95 (496)
312 3u9l_A 3-oxoacyl-[acyl-carrier 21.6 2.1E+02 0.007 26.6 7.3 86 239-334 8-97 (324)
313 3pzy_A MOG; ssgcid, seattle st 21.5 2.3E+02 0.0078 23.7 6.9 70 268-341 6-83 (164)
314 3u5t_A 3-oxoacyl-[acyl-carrier 21.5 2.9E+02 0.01 24.6 8.2 85 239-335 30-116 (267)
315 3edm_A Short chain dehydrogena 21.4 2.6E+02 0.009 24.7 7.8 54 280-334 41-96 (259)
316 4dmm_A 3-oxoacyl-[acyl-carrier 21.4 2.6E+02 0.0088 25.0 7.8 86 238-335 30-117 (269)
317 3lzd_A DPH2; diphthamide biosy 21.3 2.8E+02 0.0095 26.8 8.2 93 245-353 246-341 (378)
318 2nx9_A Oxaloacetate decarboxyl 21.3 2E+02 0.0067 28.7 7.3 54 276-329 120-176 (464)
319 2bd0_A Sepiapterin reductase; 21.3 2.8E+02 0.0096 23.9 7.9 54 280-334 41-96 (244)
320 3icc_A Putative 3-oxoacyl-(acy 21.2 2.7E+02 0.0093 24.2 7.8 53 281-334 41-101 (255)
321 3o26_A Salutaridine reductase; 21.2 1.3E+02 0.0045 27.2 5.8 54 280-334 44-101 (311)
322 3sx2_A Putative 3-ketoacyl-(ac 21.1 2.3E+02 0.008 25.2 7.5 58 269-332 12-81 (278)
323 3d3j_A Enhancer of mRNA-decapp 21.1 1.8E+02 0.0061 27.2 6.7 58 270-327 133-190 (306)
324 4iiu_A 3-oxoacyl-[acyl-carrier 21.0 2.6E+02 0.009 24.7 7.7 86 238-335 28-115 (267)
325 3zyw_A Glutaredoxin-3; metal b 21.0 2.8E+02 0.0097 21.2 7.4 26 280-305 29-54 (111)
326 3huu_A Transcription regulator 20.9 2.7E+02 0.0093 24.9 7.9 63 268-332 21-91 (305)
327 1e7w_A Pteridine reductase; di 20.9 2.4E+02 0.008 25.6 7.5 58 270-332 9-67 (291)
328 1tjy_A Sugar transport protein 20.7 2E+02 0.0068 26.2 7.0 61 270-332 4-68 (316)
329 3jy6_A Transcriptional regulat 20.6 3.8E+02 0.013 23.4 8.8 63 268-332 6-71 (276)
330 1ydn_A Hydroxymethylglutaryl-C 20.6 2.8E+02 0.0096 25.4 8.0 74 243-322 112-195 (295)
331 1ydo_A HMG-COA lyase; TIM-barr 20.6 4.2E+02 0.014 24.5 9.2 45 283-327 122-173 (307)
332 2o8n_A APOA-I binding protein; 20.5 1.5E+02 0.0052 27.1 5.9 36 270-305 80-115 (265)
333 1xhl_A Short-chain dehydrogena 20.4 2.1E+02 0.0071 26.1 7.0 85 238-335 28-117 (297)
334 4g81_D Putative hexonate dehyd 20.3 4.7E+02 0.016 23.4 9.7 30 274-303 62-91 (255)
335 1x1t_A D(-)-3-hydroxybutyrate 20.3 2.1E+02 0.0072 25.2 6.9 50 285-335 42-94 (260)
336 2io8_A Bifunctional glutathion 20.2 19 0.00065 37.6 -0.5 44 19-65 529-573 (619)
337 2o20_A Catabolite control prot 20.1 3.6E+02 0.012 24.5 8.8 63 268-332 62-127 (332)
338 1nyt_A Shikimate 5-dehydrogena 20.1 3.2E+02 0.011 24.5 8.2 43 271-320 120-162 (271)
339 3un1_A Probable oxidoreductase 20.0 2.7E+02 0.0093 24.7 7.6 62 271-334 29-106 (260)
340 3lf2_A Short chain oxidoreduct 20.0 2.9E+02 0.01 24.4 7.8 54 280-334 40-97 (265)
No 1
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=100.00 E-value=1.9e-50 Score=353.29 Aligned_cols=168 Identities=65% Similarity=1.032 Sum_probs=163.7
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCC
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 348 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 348 (437)
.+.|+|||||+||+++++++++.|++||++||++|+|+||+|+++.+|.++++++|++|+|++||+++||||+++++|.+
T Consensus 13 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 92 (183)
T 1o4v_A 13 VPRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHL 92 (183)
T ss_dssp -CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSS
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 013729 349 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 428 (437)
Q Consensus 349 pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (437)
||||||++++.++|+|+|||++|||+|+||+||+|||++|||++|+|||+++|++||+||++||+++++++++++++|++
T Consensus 93 PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~Id~~~nAa~lAaqIla~~d~~l~~kL~~~r~~~~~~v~~~~~~l~~ 172 (183)
T 1o4v_A 93 PVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLEQ 172 (183)
T ss_dssp CEEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998878999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhc
Q 013729 429 DGWESYLN 436 (437)
Q Consensus 429 ~~~~~~~~ 436 (437)
.||+.||+
T Consensus 173 ~~~~~~~~ 180 (183)
T 1o4v_A 173 IGYKEYLN 180 (183)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHh
Confidence 99999985
No 2
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=100.00 E-value=4.6e-50 Score=348.76 Aligned_cols=166 Identities=65% Similarity=0.966 Sum_probs=160.6
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCC
Q 013729 268 ILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 347 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 347 (437)
..++|+|+|||+||+++++++++.|++||++||++|+|+||+|+++.+|+++++++|++|+|++||+++||||+++++|.
T Consensus 6 ~~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 85 (174)
T 3lp6_A 6 ERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAATP 85 (174)
T ss_dssp CCCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred CCCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhccC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHHHh
Q 013729 348 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQ 427 (437)
Q Consensus 348 ~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (437)
+||||||++.+.++|+|+|||++|||+||||+||+|||++|||++|+|||+++|++||+||++||++++++|++++++|+
T Consensus 86 ~PVIgVP~~~~~l~G~daLlS~vqmp~GvpVatV~I~~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~l~ 165 (174)
T 3lp6_A 86 LPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVRMLGAANPQLRARIVAFQDRLADVVAAKDAELQ 165 (174)
T ss_dssp SCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEEcCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhh
Q 013729 428 KDGWES 433 (437)
Q Consensus 428 ~~~~~~ 433 (437)
+.||+-
T Consensus 166 ~~~~~~ 171 (174)
T 3lp6_A 166 RLAGKL 171 (174)
T ss_dssp HHTC--
T ss_pred Hhhhhh
Confidence 999963
No 3
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=100.00 E-value=1.2e-48 Score=338.26 Aligned_cols=161 Identities=43% Similarity=0.641 Sum_probs=155.9
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCC
Q 013729 268 ILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 347 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 347 (437)
..++|+|||||+||+++++++++.|++||++||++|+|+||+|+++.+|.++++++|++|+|++||+++||||+++++|.
T Consensus 5 ~~~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 84 (169)
T 3trh_A 5 NKIFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAAHTL 84 (169)
T ss_dssp -CCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHHTCS
T ss_pred CCCcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhcCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHH
Q 013729 348 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEK 425 (437)
Q Consensus 348 ~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~--~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (437)
+||||||++++.++|+|+|||++|||+||||+||+|| |++|||++|+|||+++|++||+||++||+++.++|++++++
T Consensus 85 ~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~ 164 (169)
T 3trh_A 85 KPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGKAGAKNAAILAAQIIALQDKSIAQKLVQQRTAKRETLKKADEN 164 (169)
T ss_dssp SCEEEEECCCSTTTTHHHHHHHHCCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeecCCCCCCCHHHHHHhhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 9999999988889999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred HhH
Q 013729 426 LQK 428 (437)
Q Consensus 426 ~~~ 428 (437)
|++
T Consensus 165 l~~ 167 (169)
T 3trh_A 165 LQT 167 (169)
T ss_dssp HHH
T ss_pred Hhh
Confidence 864
No 4
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=100.00 E-value=6.8e-49 Score=338.48 Aligned_cols=159 Identities=53% Similarity=0.854 Sum_probs=153.8
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCC
Q 013729 268 ILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 347 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 347 (437)
+.++|+|+|||+||+++++++++.|++||++||++|+|+||+|+++.+|.++++++|++|+|++||+++|||++++++|.
T Consensus 2 ~~~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 81 (163)
T 3ors_A 2 NAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTT 81 (163)
T ss_dssp -CCCEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHH
Q 013729 348 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEK 425 (437)
Q Consensus 348 ~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~--~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (437)
+||||||++++.++|+|+|||++|||+||||+||+|| |++|||++|+|||+++|++||+||++||++++++|++++++
T Consensus 82 ~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~ 161 (163)
T 3ors_A 82 LPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNE 161 (163)
T ss_dssp SCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCEEEeeCCCCCCCCHHHHHHHhhCCCCCceEEEEcCCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 9999999988889999999999999999999999999 99999999999999999999999999999999999988876
Q ss_pred H
Q 013729 426 L 426 (437)
Q Consensus 426 ~ 426 (437)
|
T Consensus 162 l 162 (163)
T 3ors_A 162 L 162 (163)
T ss_dssp C
T ss_pred c
Confidence 5
No 5
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=100.00 E-value=2.9e-48 Score=335.66 Aligned_cols=158 Identities=59% Similarity=0.881 Sum_probs=149.9
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCC
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 348 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 348 (437)
++.|+|||||+||+++++++++.|++||++||++|+|+||+|+++.+|.++++++|++|+|++||+++||||+++++|.+
T Consensus 11 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 90 (170)
T 1xmp_A 11 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNL 90 (170)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTCCS
T ss_pred CCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHHH
Q 013729 349 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKL 426 (437)
Q Consensus 349 pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~--~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (437)
||||||++++.++|+|+|||++|||+|+||+||+|| |++|||++|+|||+++|++||+||++||++++++|+++++++
T Consensus 91 PVIgVP~~~~~l~G~daLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kl~~~r~~~~~~v~~~~~~~ 170 (170)
T 1xmp_A 91 PVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSELV 170 (170)
T ss_dssp CEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999988789999999999999999999999999 999999999999999999999999999999999998877653
No 6
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=100.00 E-value=1.4e-47 Score=333.35 Aligned_cols=157 Identities=59% Similarity=0.883 Sum_probs=149.9
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCC
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 348 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 348 (437)
++.|+|||||+||+++++++++.|++||++||++|+||||||+++.+|.++++++|++|+|++||+++||||+++++|.+
T Consensus 22 kp~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T~~ 101 (181)
T 4b4k_A 22 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNL 101 (181)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTCCS
T ss_pred CccEEEEECCHhHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHH
Q 013729 349 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEK 425 (437)
Q Consensus 349 pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~--~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (437)
||||||+.+..++|+|+|||++|||+||||+||+|| ++.|||++|+|||+++|++||+||+.||+++.++|.++++.
T Consensus 102 PVIGVPv~s~~l~G~DsLlSivQMP~GvpVaTvaig~~ga~NAallA~qILa~~d~~l~~kl~~~r~~~~~~v~~~~e~ 180 (181)
T 4b4k_A 102 PVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSEL 180 (181)
T ss_dssp CEEEEECCCTTTTTHHHHHHHHTCCTTCCCEECCSSHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CEEEEecCCCCccchhhHHHHHhCCCCCceEEEecCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988889999999999999999999999999 67999999999999999999999999999999998877653
No 7
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=100.00 E-value=7.5e-48 Score=334.30 Aligned_cols=158 Identities=53% Similarity=0.854 Sum_probs=152.1
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCC
Q 013729 268 ILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 347 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 347 (437)
..++|+|||||+||+++++++++.|++||++||++|+|+||+|+++.+|.++++++|++|+|++||+++|||++++++|.
T Consensus 11 m~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 90 (174)
T 3kuu_A 11 AGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKTL 90 (174)
T ss_dssp CCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTCS
T ss_pred CCCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhccC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHH
Q 013729 348 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEK 425 (437)
Q Consensus 348 ~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~--~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (437)
+||||||++++.++|+|+|||++|||+||||+||+|| |++|||++|+|||+++|++||+||++||+++.++|++++.+
T Consensus 91 ~PVIgVP~~~~~l~G~dsLlS~vqmP~GvPVatV~I~~a~~~nAa~lAa~ILa~~d~~l~~kl~~~r~~~~~~v~~~~~~ 170 (174)
T 3kuu_A 91 VPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILALHDTELAGRLAHWRQSQTDDVLDNPDP 170 (174)
T ss_dssp SCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCEEEeeCCCCCCCCHHHHHHhhhCCCCCeeEEEEeCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 9999999988889999999999999999999999999 99999999999999999999999999999999998876543
No 8
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=100.00 E-value=6.3e-48 Score=337.08 Aligned_cols=160 Identities=54% Similarity=0.797 Sum_probs=152.6
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCC
Q 013729 268 ILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 347 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 347 (437)
+.++|+|||||+||++++++++..|++||++||++|+|+||+|+++.+|.++++++|++|+|++||+++||||+++++|.
T Consensus 20 ~~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 99 (182)
T 1u11_A 20 SAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTR 99 (182)
T ss_dssp CCCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred CCCEEEEEECcHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHhccC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHH
Q 013729 348 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEK 425 (437)
Q Consensus 348 ~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~--~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (437)
+||||||++++.++|+|+|||++|||+|+||+||+|| |++|||++|+|||+++|++||+||++||++++.+|++++++
T Consensus 100 ~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kL~~~r~~~~~~v~~~~~~ 179 (182)
T 1u11_A 100 LPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETWRALQTASVPNSPIT 179 (182)
T ss_dssp SCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHSCSSCC-
T ss_pred CCEEEeeCCCCCCCcHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999988789999999999999999999999999 99999999999999999999999999999999999887776
Q ss_pred Hh
Q 013729 426 LQ 427 (437)
Q Consensus 426 ~~ 427 (437)
++
T Consensus 180 l~ 181 (182)
T 1u11_A 180 ED 181 (182)
T ss_dssp --
T ss_pred hc
Confidence 64
No 9
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=100.00 E-value=1.7e-47 Score=330.19 Aligned_cols=155 Identities=53% Similarity=0.844 Sum_probs=150.3
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLP 349 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~p 349 (437)
++|+|+|||+||+++++++++.|++||++||++|+|+||+|+++.+|+++++++|++|+|++||+++|||++++++|.+|
T Consensus 6 p~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~t~~P 85 (166)
T 3oow_A 6 VQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLP 85 (166)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHTCSSC
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhccCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCC--cchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHH
Q 013729 350 VIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN--ATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAE 424 (437)
Q Consensus 350 Vi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~--~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (437)
|||||++.+.++|+|+|||++|||+||||+||+||| ++|||++|+|||+++|++||+||++||++++++|+++++
T Consensus 86 VIgVP~~~~~l~G~dsLlS~vqmp~gvpVatV~I~~ag~~nAa~lAa~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~ 162 (166)
T 3oow_A 86 VLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPD 162 (166)
T ss_dssp EEEEECCCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred EEEeecCcCCCCCHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999888899999999999999999999999995 999999999999999999999999999999999887654
No 10
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.1e-46 Score=326.10 Aligned_cols=155 Identities=54% Similarity=0.822 Sum_probs=150.2
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCC
Q 013729 268 ILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 347 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 347 (437)
+.++|+|||||+||+++++++++.|++||++||++|+|+||+|+++.+|.++++++|++|+|++||+++||||+++++|.
T Consensus 11 ~~P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~~t~ 90 (173)
T 4grd_A 11 SAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAAKTT 90 (173)
T ss_dssp SSCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHHHCC
T ss_pred CCCeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhheecCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHH
Q 013729 348 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTK 422 (437)
Q Consensus 348 ~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~--~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (437)
+||||||++++.++|+|+|||++|||+|+||+|+.|| |++|||++|+|||+++|++|++||++||.++.++++..
T Consensus 91 ~PVIgVPv~~~~l~G~dsLlSivqMP~Gvpvatv~i~~~~a~NAallA~~ILa~~d~~l~~kl~~~r~~~~~~v~~~ 167 (173)
T 4grd_A 91 VPVLGVPVASKYLKGVDSLHSIVQMPKGVPVATFAIGEAGAANAALFAVSILSGNSVDYANRLAAFRVRQNEAAHAM 167 (173)
T ss_dssp SCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEcCCCCCCchhHHHHHHhCCCCCCceEEecCCcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999998899999999999999999999999988 89999999999999999999999999999999998653
No 11
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.3e-46 Score=320.79 Aligned_cols=153 Identities=48% Similarity=0.755 Sum_probs=147.4
Q ss_pred EEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEE
Q 013729 272 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVI 351 (437)
Q Consensus 272 V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi 351 (437)
|+|+|||+||++++++++..|++||++||++|+|+||+|+++.+|.+++++ +|+|++||+++||||+++++|.+|||
T Consensus 2 V~Iimgs~SD~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~---~ViIa~AG~aa~Lpgvva~~t~~PVI 78 (157)
T 2ywx_A 2 ICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIAIAGLAAHLPGVVASLTTKPVI 78 (157)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCC---SEEEEEEESSCCHHHHHHTTCSSCEE
T ss_pred EEEEEccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCC---CEEEEEcCchhhhHHHHHhccCCCEE
Confidence 689999999999999999999999999999999999999999999987655 99999999999999999999999999
Q ss_pred eccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 013729 352 GVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 428 (437)
Q Consensus 352 ~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (437)
|||+ +..++|+|+|||++|||+|+||+||+|||++|||++|+|||+++|++||+||++||+++++++++++++|++
T Consensus 79 gVP~-~~~l~G~daLlS~vqmP~gvpVatV~I~~~~nAa~lA~~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~l~~ 154 (157)
T 2ywx_A 79 AVPV-DAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAILALEILALKDENIAKKLIEYREKMKKKVYASDEKVKE 154 (157)
T ss_dssp EEEE-CSSGGGHHHHHHHHSCCTTSCCEECCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EecC-CCccCcHHHHHHHhcCCCCCeeEEEecCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999 678999999999999999999999999999999999999999999999999999999999999999987764
No 12
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=100.00 E-value=2.4e-46 Score=322.38 Aligned_cols=155 Identities=29% Similarity=0.435 Sum_probs=148.4
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhc-CCeEEEEeccccccccCcccCCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER-GIEIIIAGAGGAAHLPGMVAARTPL 348 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~-g~~v~i~~ag~~~~l~~~i~~~~~~ 348 (437)
++|+|+|||+||+++++++++.|++||++||++|+|+||+|+++.+|.++++++ |++|+|++||+++|||++++++|.+
T Consensus 3 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~t~~ 82 (159)
T 3rg8_A 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFVKG 82 (159)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHHSSS
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhccCC
Confidence 579999999999999999999999999999999999999999999999998886 7999999999999999999999999
Q ss_pred CEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHHHh
Q 013729 349 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQ 427 (437)
Q Consensus 349 pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (437)
||||||++++.++|+| |||++|||+|+||+|| ||++|||++|+|||+++|++||+||++||+++++++++++++|+
T Consensus 83 PVIgVP~~~~~l~G~d-LlS~vqmp~GvpVatv--~~~~nAa~lA~~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~l~ 158 (159)
T 3rg8_A 83 ATIACPPPSDSFAGAD-IYSSLRMPSGISPALV--LEPKNAALLAARIFSLYDKEIADSVKSYMESNAQKIIEDDSKLK 158 (159)
T ss_dssp CEEECCCCCCGGGGTH-HHHHHCCCTTCCCEEC--CSHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CEEEeeCCCCCCCCcc-HHHHHhCCCCCceEEe--cCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999888899999 9999999999999997 79999999999999999999999999999999999999988774
No 13
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=100.00 E-value=2.1e-40 Score=336.82 Aligned_cols=250 Identities=43% Similarity=0.732 Sum_probs=223.7
Q ss_pred CHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEe
Q 013729 5 DLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCY 84 (437)
Q Consensus 5 s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~ 84 (437)
+.+|+.++++++|||+||||..++++|+|+++++|.+|+.++++.+.+. .+++|+||++++|+++.++++.+| +..+
T Consensus 148 ~~~~~~~~~~~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~--~~lvEe~i~~~~E~sv~v~~~~~g-~~~~ 224 (403)
T 3k5i_A 148 TPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALKDR--PLYAEKWAYFKMELAVIVVKTKDE-VLSY 224 (403)
T ss_dssp CHHHHHHHHHHHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTTTS--CEEEEECCCEEEEEEEEEEECSSC-EEEC
T ss_pred CHHHHHHHHHHhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcCCC--cEEEecCCCCCeEEEEEEEEcCCC-EEEe
Confidence 8999999999999999999987767899999999999999999887644 499999999669999999999888 8889
Q ss_pred eeeeeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeecc
Q 013729 85 PVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCY 163 (437)
Q Consensus 85 ~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~~~~ 163 (437)
+..++...+|.+...+.|+. ++++..+++++++.+++++||++|++++||+++++|++||+|||||+++||++++.+++
T Consensus 225 p~~~~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~dg~~~v~EiNpR~~~sg~~~~~~~~ 304 (403)
T 3k5i_A 225 PTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLEDDSIMLCEIASRIHNSGHYTIEGCA 304 (403)
T ss_dssp CCEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEETTSCEEEEEEESSCCGGGTTHHHHBS
T ss_pred CCeeeEEeCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCcEEEEEeecCCCCCCceeeeecC
Confidence 98888888888888889999 99999999999999999999999999999999988999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCCCCCCCCCC-CcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCceeEEEEEE
Q 013729 164 TSQFEQHMRAVVGLPLGDPSMKT-PAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIV 242 (437)
Q Consensus 164 ~~~~~~~~~~a~G~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~G~Vi~~ 242 (437)
+|+|++++|+++|+|++...... .+++|.++++...+...+. ++.+++..|+|++++|++++.++++++|||+++
T Consensus 305 ~s~~~~~~ra~~G~pl~~~~~~~~~~a~m~nilg~~~~~~~~~----~~~~~~~~p~~~~~~ygk~~~~~~rkmGhv~~~ 380 (403)
T 3k5i_A 305 LSQFDAHLRAILDLPIPAQSLEIRQPSIMLNIIGGAAPDTHLQ----AAECALSIPNASIHLYSKGAAKPGRKMGHITVT 380 (403)
T ss_dssp SCHHHHHHHHHTTCCCCGGGGSBSSCEEEEEEECCSSSSHHHH----HHHHHTTSTTEEEEECCCCSCCTTCEEEEEEEE
T ss_pred CCHHHHHHHHHcCCCCCcccccCCCcEEEEEEecCCccccchh----HHHHHhcCCCCEEEECCCCCCCCCCeeEEEEEE
Confidence 99999999999999999865432 3488999998643321233 566778899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhccCC
Q 013729 243 GSSMGLVESRLNSLLKEDS 261 (437)
Q Consensus 243 G~s~~eA~~k~~~a~~~i~ 261 (437)
|+|.++|++++.++.+.++
T Consensus 381 ~~~~~~~~~~a~~~~~~~~ 399 (403)
T 3k5i_A 381 APTMHEAETHIQPLIDVVD 399 (403)
T ss_dssp CSSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhhh
Confidence 9999999999999987654
No 14
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=100.00 E-value=2.4e-40 Score=329.89 Aligned_cols=240 Identities=31% Similarity=0.474 Sum_probs=215.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCC--HHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKS--EEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDK 79 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~--~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G 79 (437)
.+++.+|+.++++++|||+||||+.+|++|+|+++|+| .+|+.+++ .+ .++||+||++++|+++.++++.+|
T Consensus 99 ~v~~~~e~~~~~~~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~---~~---~vivEe~I~~~~Eisv~v~~~~~G 172 (355)
T 3eth_A 99 LLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAEC---YG---ECIVEQGINFSGEVSLVGARGFDG 172 (355)
T ss_dssp EECCGGGHHHHHHHHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG---TT---TEEEEECCCCSEEEEEEEEECTTS
T ss_pred EECCHHHHHHHHHHcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh---hC---CEEEEEccCCCcEEEEEEEEcCCC
Confidence 35788999999999999999999887678999999999 99998743 22 399999999779999999999999
Q ss_pred ceEEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCcee
Q 013729 80 SILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTI 159 (437)
Q Consensus 80 ~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~ 159 (437)
++.++|+.++++++|.+...++|+.++++..+++++++.+++++||++|++++||++++ |++||+|||||+++|+|++.
T Consensus 173 ~~~~~p~~e~~~~~g~~~~~~~pa~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~~-~~~~v~EinpR~~~sg~~t~ 251 (355)
T 3eth_A 173 STVFYPLTHNLHQDGILRTSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFVTP-QGLLINELAPRVHNSGHWTQ 251 (355)
T ss_dssp CEEECCCEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEESSCCGGGTTHH
T ss_pred CEEEECCEEEEeeCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC-CcEEEEEeeCCCCCCccEEe
Confidence 99999999988888887777888899999999999999999999999999999999985 57999999999999999999
Q ss_pred eeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCceeEEE
Q 013729 160 ESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHI 239 (437)
Q Consensus 160 ~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~G~V 239 (437)
.++++|+|++|+|+++|+|++++... .+++|.++++.. ...+++..|+|++|+||+ +.++++++|||
T Consensus 252 ~~~~~s~fe~~~ra~~G~pl~~~~~~-~~~~m~nilg~~-----------~~~~~~~~p~~~~~~ygk-~~r~~rkmGhv 318 (355)
T 3eth_A 252 NGASISQFELHLRAITDLPLPQPVVN-NPSVMINLIGSD-----------VNYDWLKLPLVHLHWYDK-EVRPGRKVGHL 318 (355)
T ss_dssp HHSSSCHHHHHHHHHTTCCCCCCCCC-SCEEEEEEESCC-----------CCGGGGGSTTCEEEECCC-CCCTTCEEEEE
T ss_pred eeecCCHHHHHHHHHcCCCCCCcccc-CceEEEEEecch-----------HHHHHHhCCCCEEEEcCC-CCCCCCeeEEE
Confidence 99999999999999999999987653 458899999853 223567789999999999 99999999999
Q ss_pred EEEcCCHHHHHHHHHHhhccCC
Q 013729 240 TIVGSSMGLVESRLNSLLKEDS 261 (437)
Q Consensus 240 i~~G~s~~eA~~k~~~a~~~i~ 261 (437)
++.|+|.++++++++++...++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~ 340 (355)
T 3eth_A 319 NLTDSDTSRLTATLEALIPLLP 340 (355)
T ss_dssp EEECSCHHHHHHHHHHHGGGSC
T ss_pred EEEcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998765
No 15
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=100.00 E-value=2e-39 Score=330.97 Aligned_cols=253 Identities=30% Similarity=0.484 Sum_probs=225.0
Q ss_pred ccCCHHHHHHHHHh----hCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcC
Q 013729 2 EVNDLESARRAGKQ----FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGR 77 (437)
Q Consensus 2 ~v~s~~e~~~~a~~----~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~ 77 (437)
.+++.+|+.+++++ + ||+||||..+|++|+|+++++|.+|+.++++.+.+.+ +++|+||++++|+++.+++|.
T Consensus 153 ~v~~~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~~~~~--~lvEe~i~~~~Eisv~v~~~~ 229 (419)
T 4e4t_A 153 VIESAAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAALGGVP--CVLEKRLPLKYEVSALIARGA 229 (419)
T ss_dssp EECSHHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHTTTCC--EEEEECCCEEEEEEEEEEECT
T ss_pred EECCHHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhcCCCc--EEEeecCCCCeEEEEEEEEcC
Confidence 35788999999988 9 9999999756669999999999999999998875544 999999997799999999999
Q ss_pred CCceEEeeeeeeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCC
Q 013729 78 DKSILCYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGH 156 (437)
Q Consensus 78 ~G~~~~~~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~ 156 (437)
+|++..++..++.+.+|.+...+.|+. ++++..+++++++.+++++||++|++++||++++||++||+|||||++++++
T Consensus 230 ~G~~~~~~~~e~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~dG~~~v~EiNpR~~~sg~ 309 (419)
T 4e4t_A 230 DGRSAAFPLAQNVHHNGILALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLEDGSFVANEMAPRPHNSGH 309 (419)
T ss_dssp TSCEEECCCEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTCCEEEEEEESSCCGGGT
T ss_pred CCCEEEEeCeEEEeeCCeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeCCCCEEEEEEeCCCCCCCC
Confidence 999999998888888888777788998 9999999999999999999999999999999998899999999999999999
Q ss_pred ceeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccC------CCccccccchhhhhccCCceEEEeccccc
Q 013729 157 HTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE------RGFYLAHQLIGKALSIPGATVHWYDKPEM 230 (437)
Q Consensus 157 ~~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~~~~~~~pg~~~~~~~~~~~ 230 (437)
++..++++|+|++++|+++|+|++++.. ..+++|.++++..... ..+. ++.++++.|+|++++|++++.
T Consensus 310 ~t~~~~~~s~~~~~~ra~~G~pl~~~~~-~~~~~m~n~lg~~~~~~~~~~~~~~~----~~~~~l~~p~~~~~~ygk~~~ 384 (419)
T 4e4t_A 310 YTVDACATSQFEQQVRAMTRMPLGNPRQ-HSPAAMLNILGDVWFPNGAAAGAVTP----PWDTVAAMPAAHLHLYGKEEA 384 (419)
T ss_dssp THHHHBSSCHHHHHHHHHTTCCCCCCCB-CSCEEEEEEEGGGGCTTCGGGCCCCC----CHHHHHTSTTEEEEECCCSCC
T ss_pred eEeeccCCCHHHHHHHHHcCCCCCCccc-cCCeEEEEEecCccccccccccccch----HHHHHHhCCCCEEEECCCCCC
Confidence 9999999999999999999999998765 3458899999863210 1123 666778899999999999999
Q ss_pred cCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 231 RQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 231 ~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
++++++|||++.|+|.++|+++++++.+.+++
T Consensus 385 ~~~rkmGhv~~~~~~~~~~~~~a~~~~~~l~~ 416 (419)
T 4e4t_A 385 RVGRKMGHVNFTAEMRDDAVAAATACAQLLRV 416 (419)
T ss_dssp CTTCEEEEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCceEEEEEEeCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999887653
No 16
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=100.00 E-value=4.2e-39 Score=325.74 Aligned_cols=246 Identities=37% Similarity=0.598 Sum_probs=218.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCce
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~ 81 (437)
.+.+.+|+.++++++|||+||||+.++++|+|+++++|.+|+.++++.+...+ ++||+||+|++|+++.+++|.+|++
T Consensus 132 ~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~--~lvEe~i~g~~E~~v~~~~~~~G~~ 209 (389)
T 3q2o_A 132 LVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAE--CILEKWVPFEKEVSVIVIRSVSGET 209 (389)
T ss_dssp EESSHHHHHHHHHHHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHHHSC--EEEEECCCCSEEEEEEEEECTTCCE
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCC--EEEEecccCceEEEEEEEEcCCCCE
Confidence 36789999999999999999999887645899999999999999998776545 9999999988999999999989999
Q ss_pred EEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeee
Q 013729 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (437)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~~ 161 (437)
..++..++....|.+...+.|+.++++..+++++++.+++++||++|++++||++++||++||+|||||+++|++++..+
T Consensus 210 ~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~dg~~~viEiNpR~~~s~~~~~~~ 289 (389)
T 3q2o_A 210 KVFPVAENIHVNNILHESIVPARITEELSQKAIAYAKVLADELELVGTLAVEMFATADGEIYINELAPRPHNSGHYTQDA 289 (389)
T ss_dssp EECCCEEEEEETTEEEEEEESCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHHHH
T ss_pred EEecCeeeEEcCCceEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCCEEEEEeeCCCCCchhHHHHH
Confidence 99999888888888777888999999999999999999999999999999999999888999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhh-hccCCceEEEeccccccCCceeEEEE
Q 013729 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKA-LSIPGATVHWYDKPEMRQQRKMGHIT 240 (437)
Q Consensus 162 ~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~pg~~~~~~~~~~~~~~~~~G~Vi 240 (437)
+++|+|++++++++|.|+++.... .+++|.++++.. ++ .+... .++|+|++++||+.+.++++++|||+
T Consensus 290 ~g~~~~~~~~r~~lg~~l~~~~~~-~~~~~~~~~g~~-----~~----~~~~~~~~~p~~~~~lygk~~~~~~r~~G~v~ 359 (389)
T 3q2o_A 290 CETSQFGQHIRAICNLPLGETNLL-KPVVMVNILGEH-----IE----GVLRQVNRLTGCYLHLYGKEEAKAQRKMGHVN 359 (389)
T ss_dssp BSSCHHHHHHHHHHTCCCCCCCBC-SCEEEEEEEHHH-----HH----HHHHTGGGCTTEEEEECCCSSCCTTSEEEEEE
T ss_pred cCCCHHHHHHHHHcCCCCCCcccc-CcEEEEEEecCc-----hh----hHHHHHHhCCCCEEEECCCCCCCCCCeeEEEE
Confidence 999999999999999999987543 347888887642 11 22223 47899999999988888999999999
Q ss_pred EEcCCHHHHHHHHHHhhcc
Q 013729 241 IVGSSMGLVESRLNSLLKE 259 (437)
Q Consensus 241 ~~G~s~~eA~~k~~~a~~~ 259 (437)
++|+|+++|+.++..+.-|
T Consensus 360 ~~~~~~~~a~~~a~~~~~w 378 (389)
T 3q2o_A 360 ILNDNIEVALEKAKSLHIW 378 (389)
T ss_dssp EECSSHHHHHHHHHHTTSC
T ss_pred EEcCCHHHHHHHHHHhCcc
Confidence 9999999999999988765
No 17
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=100.00 E-value=6.5e-39 Score=323.09 Aligned_cols=239 Identities=33% Similarity=0.574 Sum_probs=214.0
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceE
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL 82 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~ 82 (437)
+.+.+|+.++++++|||+||||..++|+|+|++++++.+|+.++++.+...+ +++|+||+|.+|+++.++++.+|++.
T Consensus 131 ~~~~~~~~~~~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~--~ivEe~i~g~~E~sv~~~~~~~g~~~ 208 (377)
T 3orq_A 131 VKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSE--CVAEKYLNIKKEVSLTVTRGNNNQIT 208 (377)
T ss_dssp ECSSTHHHHHHHHTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHTTSC--EEEEECCCEEEEEEEEEEECGGGCEE
T ss_pred ECCHHHHHHHHHHcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCc--EEEEccCCCCEEEEEEEEEeCCCCEE
Confidence 5678899999999999999999887668999999999999999999887655 99999999879999999988888999
Q ss_pred EeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeec
Q 013729 83 CYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESC 162 (437)
Q Consensus 83 ~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~~~ 162 (437)
.++..++..++|.+...+.|+.+++ .+++.+++.+++++||++|++++||+++++|++||+|||||+++++|+++.++
T Consensus 209 ~~~~~e~~~~~g~~~~~~~Pa~l~~--~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~v~EinpR~~~sg~~t~~~~ 286 (377)
T 3orq_A 209 FFPLQENEHRNQILFKTIVPARIDK--TAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEAC 286 (377)
T ss_dssp ECCCEEEEEETTEEEEEEESCSSCC--HHHHHHHHHHHHTTSCCCEEEEEEEEEETTCCEEEEEEESSCCGGGTTHHHHB
T ss_pred EECCEeEEEECCEEEEEECCCCCCH--HHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEeeCCcCCCCcEeehhc
Confidence 9999888888888777888998887 88999999999999999999999999998899999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCCCC-CCCCCCcEEEEEeeccCccCCCccccccchhhhhc-cCCceEEEeccccccCCceeEEEE
Q 013729 163 YTSQFEQHMRAVVGLPLGD-PSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALS-IPGATVHWYDKPEMRQQRKMGHIT 240 (437)
Q Consensus 163 ~~~~~~~~~~~a~G~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~pg~~~~~~~~~~~~~~~~~G~Vi 240 (437)
++++|++|+|+++|+|+++ +.. ..+++|.++++.. ++ ++.+.+. .|+|++||||+++.++++++|||+
T Consensus 287 ~~s~f~~~~ra~~G~pl~~~~~~-~~~~~m~n~lg~~-----~~----~~~~~~~~~~~~~~~~ygk~~~~~~rkmGhv~ 356 (377)
T 3orq_A 287 DYSQFDTHILAVTGQSLPNSIEL-LKPAVMMNLLGKD-----LD----LLENEFNEHPEWHLHIYGKSERKDSRKMGHMT 356 (377)
T ss_dssp SSCHHHHHHHHHTTCCCCSCCCB-SSCEEEEEEEHHH-----HH----HHGGGGGGCGGGCEEECCCSSCCTTSEEEEEE
T ss_pred CCCHHHHHHHHHcCCCCCccccc-cccEEEEEEeCcc-----ch----hHHHHHhhCCCCEEEECCCCCCCCCCeeEEEE
Confidence 9999999999999999998 554 3458899999752 22 4555555 699999999999999999999999
Q ss_pred EEcCCHHHHHHHHHH
Q 013729 241 IVGSSMGLVESRLNS 255 (437)
Q Consensus 241 ~~G~s~~eA~~k~~~ 255 (437)
+.|+|.+++++++..
T Consensus 357 ~~~~~~~~~~~~~~~ 371 (377)
T 3orq_A 357 VLTNDVNQTEQDMYA 371 (377)
T ss_dssp EECSCHHHHHHHHHH
T ss_pred EEcCCHHHHHHHhHH
Confidence 999999999998754
No 18
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=323.39 Aligned_cols=159 Identities=23% Similarity=0.379 Sum_probs=153.2
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCC-eEEEEeccccccccCcccCCC
Q 013729 268 ILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGI-EIIIAGAGGAAHLPGMVAART 346 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~-~v~i~~ag~~~~l~~~i~~~~ 346 (437)
..++|+|||||+||++++++++..|++||++|+++|+|+||+|+++.+|.++++++|+ +|+|++||+++|||||++++|
T Consensus 264 ~~~~V~Ii~gs~SD~~~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva~~t 343 (425)
T 2h31_A 264 SQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNT 343 (425)
T ss_dssp CCCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHHHHC
T ss_pred CCCeEEEEecCcccHHHHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhHHhccC
Confidence 4578999999999999999999999999999999999999999999999999999999 599999999999999999999
Q ss_pred CCCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHccCChHHHHHHHHHHHHhHHHHHHHHHHH
Q 013729 347 PLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKL 426 (437)
Q Consensus 347 ~~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (437)
.+||||||++ ..++|+||||||+|||+|+||+||+ +++|||++|+|||+++|+.||+||++||++++.+|.+++++|
T Consensus 344 ~~PVIgvP~~-~~~~G~daLls~vqmp~g~pvatv~--~~~nAa~~A~~Il~~~~~~l~~kl~~~~~~~~~~v~~~~~~l 420 (425)
T 2h31_A 344 AYPVISCPPL-TPDWGVQDVWSSLRLPSGLGCSTVL--SPEGSAQFAAQIFGLSNHLVWSKLRASILNTWISLKQADKKI 420 (425)
T ss_dssp SSCEEECCCC-CTTTHHHHGGGTSSCCSSCCCEECC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeeCc-cccccHHHHHHHhcCCCCCceEEec--CchHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 9999999996 6699999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred hHh
Q 013729 427 QKD 429 (437)
Q Consensus 427 ~~~ 429 (437)
+..
T Consensus 421 ~~~ 423 (425)
T 2h31_A 421 REC 423 (425)
T ss_dssp HTT
T ss_pred hhc
Confidence 754
No 19
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=100.00 E-value=1.5e-37 Score=349.64 Aligned_cols=351 Identities=17% Similarity=0.184 Sum_probs=267.7
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC--CCcEEEeeccCCCeEEEEEEEEcCCC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF--DRGLYVEKWAPFVKELAVIVVRGRDK 79 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~--~~~~lvEe~I~g~~E~sv~~~~d~~G 79 (437)
.+.+.+|+.++++++|||+||||++++ ||+||.+|+|++|+.++++.+... ...++||+||+|.+|+++++++|+.
T Consensus 694 ~~~s~eea~~~~~~ig~PvvVKP~~~~-gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~~E~~V~~l~d~~- 771 (1073)
T 1a9x_A 694 TVTAIEMAVEKAKEIGYPLVVRASYVL-GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGE- 771 (1073)
T ss_dssp ECCSHHHHHHHHHHHCSSEEEEC--------CEEEECSHHHHHHHHHHCC--------EEEBCCTTCEEEEEEEEECSS-
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCC-CCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCCcEEEEEEEEECC-
Confidence 367899999999999999999998876 899999999999999999886421 2459999999986699999999754
Q ss_pred ceEEeeeeeeEEec----CceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 80 SILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 80 ~~~~~~~~e~~~~~----g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
.++.+++.+++.+. |+....++|..++++..+++++++.+++++||++|++|+||+++ +|++||+|||||++++.
T Consensus 772 ~v~~~~i~e~~~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~-~~~~~viEvNpR~~~~~ 850 (1073)
T 1a9x_A 772 MVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK-NNEVYLIEVNPRAARTV 850 (1073)
T ss_dssp CEEEEEEEEESSCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-SSCEEEEEEECSCCTTH
T ss_pred eEEEEeeEEEEeccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE-CCeEEEEEEECCCccHH
Confidence 46677777776543 33333334447999999999999999999999999999999997 67899999999999876
Q ss_pred CceeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCce
Q 013729 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRK 235 (437)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~ 235 (437)
+++..++|+|+++.+++.++|.++++..... ......++.+.+ .|+ ..++++++..+ +|+ +++
T Consensus 851 ~~~~~~tGi~l~~~~~~~~~G~~l~~~~~~~--~~~~~~~~vk~~--~~~--------f~~~~~~d~~l--g~~---~~s 913 (1073)
T 1a9x_A 851 PFVSKATGVPLAKVAARVMAGKSLAEQGVTK--EVIPPYYSVKEV--VLP--------FNKFPGVDPLL--GPE---MRS 913 (1073)
T ss_dssp HHHHHHHSCCHHHHHHHHHTTCCHHHHTCCS--CCCCSSEEEEEE--ECG--------GGGCTTSCCCC--CSS---CCC
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCchhcccCc--CcCCCeEEEEec--cCC--------cccCCCCcCCC--CCc---ccc
Confidence 7777789999999999999999886432100 000000000000 011 23456776654 355 568
Q ss_pred eEEEEEEcCCHHHHHHHHHHhhcc-CCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHH
Q 013729 236 MGHITIVGSSMGLVESRLNSLLKE-DSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMF 314 (437)
Q Consensus 236 ~G~Vi~~G~s~~eA~~k~~~a~~~-i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~ 314 (437)
+|+|+++|.|+++|+.++..+.+. ++ +.+++ +++.++.||+.+.+.++.|.++||++.+| .+ |.
T Consensus 914 tGev~g~~~~~~~a~~ka~~~~~~~~p------~~g~v-lisv~d~~K~~~~~~a~~l~~~G~~i~aT----~g----Ta 978 (1073)
T 1a9x_A 914 TGEVMGVGRTFAEAFAKAQLGSNSTMK------KHGRA-LLSVREGDKERVVDLAAKLLKQGFELDAT----HG----TA 978 (1073)
T ss_dssp CEEEEEEESSHHHHHHHHHHHTTCCCC------SSSEE-EEECCGGGGTTHHHHHHHHHHTTCEEEEC----HH----HH
T ss_pred cCceEEecCCHHHHHHhhHHhccCCCC------CcceE-EEEecCcCHHHHHHHHHHHHHCCCEEEEc----Cc----hH
Confidence 999999999999999999999874 43 45677 88999999999999999999999999888 55 78
Q ss_pred HhHhhhhhcCCeEEEEec--cccccccCcccCCCCCCEEeccCC-CCCCCChhhHHHhhhCCCCCceEE-EEeCCcchHH
Q 013729 315 SYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVAT-VAINNATNAG 390 (437)
Q Consensus 315 ~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVi~~p~~-~~~~~g~~~l~~~~~~~~gvp~~t-v~~~~~~~aa 390 (437)
+|+ ++.|++|..+.+ .+.+++.++|..+....|||+|.. ....||.. +|+.++..||||.| +. +..|+
T Consensus 979 ~~l---~~~gi~~~~v~~~~~g~p~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~r~~a~~~~~~~~t~~~---~~~~~ 1050 (1073)
T 1a9x_A 979 IVL---GEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRV--IRRSALQYKVHYDTTLN---GGFAT 1050 (1073)
T ss_dssp HHH---HTTTCCCEECBCTTTCSSBHHHHHHHTCCSEEEECCCSHHHHHHTHH--HHHHHHHTTCEEESSHH---HHHHH
T ss_pred HHH---HhCCceEEEEeecCCCCccHHHHHHcCCeEEEEECCCCcccccchHH--HHHHHHHhCCCEEccHH---HHHHH
Confidence 888 567999988865 467899999999999999999975 22345666 89999999999994 43 55666
Q ss_pred HHHHH
Q 013729 391 LLAVR 395 (437)
Q Consensus 391 ~~a~~ 395 (437)
+.|++
T Consensus 1051 ~~~~~ 1055 (1073)
T 1a9x_A 1051 AMALN 1055 (1073)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65553
No 20
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=100.00 E-value=5.6e-34 Score=285.99 Aligned_cols=245 Identities=40% Similarity=0.674 Sum_probs=207.7
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCce
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~ 81 (437)
.+++.+++.++++++|||+||||..++++|+||++++|.+|+.++++.+.. ..+++|+||++++|+++.++.|.+|++
T Consensus 116 ~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~--~~~lvEe~i~~g~e~sv~~~~d~~G~~ 193 (369)
T 3aw8_A 116 PVDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALGG--RGLILEGFVPFDREVSLLAVRGRTGEV 193 (369)
T ss_dssp EESSHHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHHHHHTTTCS--SSEEEEECCCCSEEEEEEEEECTTSCE
T ss_pred eeCCHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcCC--CcEEEEEcCCCCEEEEEEEEECCCCCE
Confidence 357899999999999999999997765589999999999999999987653 449999999955999999999888888
Q ss_pred EEeeeeeeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceee
Q 013729 82 LCYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIE 160 (437)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~ 160 (437)
..++..+...+.+.....+.|++ ++++..+++.+++.+++++||++|++++||++++ |++|++|+|||++++++++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~~~~viEiN~R~~~~~~~~~~ 272 (369)
T 3aw8_A 194 AFYPLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQVG-EELLFNEMAPRVHNSGHWTIE 272 (369)
T ss_dssp EECCCEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEESSCCGGGTTHHH
T ss_pred EEECCeeeeeeCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC-CcEEEEEEeCCcCCccceeee
Confidence 88888777766676666788998 9999999999999999999999999999999997 789999999999998888877
Q ss_pred eccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCceeEEEE
Q 013729 161 SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHIT 240 (437)
Q Consensus 161 ~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~G~Vi 240 (437)
+++.++++.+++.++|.+++..... .++++.++++.. + +++.+...|++++++|++ ...+++++|+|+
T Consensus 273 ~~g~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~-~---------~~~~~~~~p~~~~~~~g~-~~~~~~~lg~v~ 340 (369)
T 3aw8_A 273 GAETSQFENHLRAVLGLPLGSTAPR-GQSAMVNLIGEK-P---------PFAEVLKVEGAHLHWYGK-AVRPGRKVGHIT 340 (369)
T ss_dssp HBSSCHHHHHHHHHHTCCCCCCCBC-SEEEEEEEESCC-C---------CHHHHHTSTTEEEEECCC-CCCTTCEEEEEE
T ss_pred eecCCHHHHHHHHHcCCCCCCcccc-ccEEEEEEeCCC-c---------hHHHhccCCCcEEEEecC-CCCCCCeEEEEE
Confidence 8899999999999999999876543 447778887653 1 334455678888889987 677799999999
Q ss_pred EEcCCHHHHHHHHHHhhccCC
Q 013729 241 IVGSSMGLVESRLNSLLKEDS 261 (437)
Q Consensus 241 ~~G~s~~eA~~k~~~a~~~i~ 261 (437)
++|+|.+||+++++++.++++
T Consensus 341 ~~g~~~~ea~~~~~~~~~~i~ 361 (369)
T 3aw8_A 341 LRRDGLKALEEGLARLSRLVS 361 (369)
T ss_dssp EEESSHHHHHHHHHHHHTTSS
T ss_pred EEcCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998876
No 21
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-33 Score=284.75 Aligned_cols=247 Identities=45% Similarity=0.715 Sum_probs=198.5
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceE
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL 82 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~ 82 (437)
+++.++ +++++|||+|+||..++|+|+|+++++|.+|+.++++ ..+++||||++++|+++.++++.+|++.
T Consensus 121 ~~~~~~---~~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~------~~~lvEe~i~~g~e~sv~~~~~~~G~~~ 191 (380)
T 3ax6_A 121 VKDLES---DVREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIK------GETYLEEFVEIEKELAVMVARNEKGEIA 191 (380)
T ss_dssp CSSHHH---HHHTTCSSEEEEESCCC-----EEEECSGGGGGGCCC------SSEEEEECCCEEEEEEEEEEECSSCCEE
T ss_pred eCCHHH---HHHhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhc------CCEEEEeccCCCeeEEEEEEECCCCCEE
Confidence 456666 6778999999999876558999999999999877654 3499999999449999999998889988
Q ss_pred EeeeeeeE--EecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceee
Q 013729 83 CYPVVETI--HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIE 160 (437)
Q Consensus 83 ~~~~~e~~--~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~ 160 (437)
.++..++. .+.+.....+.|+.++++..+++++++.+++++||++|++++||+++++|++|++|+|||++++++++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~g~~~viEiN~R~~~~~~~~~~ 271 (380)
T 3ax6_A 192 CYPVVEMYFDEDANICDTVIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILVNEIAPRPHNSGHYTIE 271 (380)
T ss_dssp EEEEEEEC--------CEEEESCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEEEEEESSCCGGGTHHHH
T ss_pred EECCeeeeecccCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEecCCCCCCceeehh
Confidence 88887776 5566656667899999999999999999999999999999999999988999999999999998888877
Q ss_pred eccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCcc-CCCccccccchhhhhccCCceEEEeccccccCCceeEEE
Q 013729 161 SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEG-ERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHI 239 (437)
Q Consensus 161 ~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~G~V 239 (437)
++++|++++++++++|.+++..... .++++.++++.... .... ...+++.+ ..|+++++++++...++++++|+|
T Consensus 272 ~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~-~~p~~~~~~~g~~~~~~~~~lg~v 347 (380)
T 3ax6_A 272 ACVTSQFEQHIRAIMNLPLGSTELL-IPAVMVNLLGEEGYYGKPA--LIGLEEAL-AIEGLSLHFYGKKETRPYRKMGHF 347 (380)
T ss_dssp HBSSCHHHHHHHHHTTCCCCCCCBC-SCEEEEEEEBCTTCCBSEE--EESHHHHH-TSTTEEEEECCCSCBCBTCEEEEE
T ss_pred hccccHHHHHHHHHhCCCCCCcccc-CceEEEEEecccccccccc--cchhHHHh-cCCCCEEEecCCCCCCCCCeeEEE
Confidence 8899999999999999999876543 33777888876431 1111 01155566 789999999987666678999999
Q ss_pred EEEcCCHHHHHHHHHHhhccCCc
Q 013729 240 TIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 240 i~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
++.|+|.+||+++++++.+++++
T Consensus 348 ~~~g~~~~~a~~~~~~~~~~i~~ 370 (380)
T 3ax6_A 348 TVVDRDVERALEKALRAKKILKV 370 (380)
T ss_dssp EEECSSHHHHHHHHHHHTTTCEE
T ss_pred EEEeCCHHHHHHHHHHHHhhhhh
Confidence 99999999999999999988764
No 22
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=100.00 E-value=1.1e-32 Score=278.49 Aligned_cols=251 Identities=25% Similarity=0.335 Sum_probs=204.6
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC----CCCcEEEeeccCCCeEEEEEEEEcCC
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG----FDRGLYVEKWAPFVKELAVIVVRGRD 78 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~----~~~~~lvEe~I~g~~E~sv~~~~d~~ 78 (437)
+.+.+++.++++++|||+||||..++ ||+|+++|+|.+|+.++++.+.. ....+++|+||+++.|+++.++++.+
T Consensus 134 ~~~~~~~~~~~~~~g~P~vvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~ 212 (391)
T 1kjq_A 134 ADSESLFREAVADIGYPCIVKPVMSS-SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVD 212 (391)
T ss_dssp ESSHHHHHHHHHHHCSSEEEEESCC----CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEEEEEEEEETT
T ss_pred eCCHHHHHHHHHhcCCCEEEEeCCCC-CCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEEEEEEEEeCC
Confidence 57889999999999999999997765 99999999999999999887532 12459999999966999999999876
Q ss_pred CceEEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce
Q 013729 79 KSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (437)
Q Consensus 79 G~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~ 158 (437)
| ...++..++....++....+.|++++++..+++.+++.+++++||++|++++||+++++ .+||+|+|||++++++++
T Consensus 213 g-~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R~~~~~~~~ 290 (391)
T 1kjq_A 213 G-VHFCAPVGHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGD-EVIFSEVSPRPHDTGMVT 290 (391)
T ss_dssp E-EEECCCEEEEEETTEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEETT-EEEEEEEESSCCGGGGGH
T ss_pred C-eEEccCcceEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEECCCCCCccee
Confidence 6 45555556655557666677899999999999999999999999999999999999976 799999999999988888
Q ss_pred eeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCceeEE
Q 013729 159 IESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGH 238 (437)
Q Consensus 159 ~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~G~ 238 (437)
..++++|+++.+++.++|.+++.... ..++++.++++..... +. ...+++++.. |++.+++++++....++++|+
T Consensus 291 ~~~~g~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~-pg~~v~~~~~~~~~~~~~lg~ 365 (391)
T 1kjq_A 291 LISQDLSEFALHVRAFLGLPVGGIRQ-YGPAASAVILPQLTSQ--NV-TFDNVQNAVG-ADLQIRLFGKPEIDGSRRLGV 365 (391)
T ss_dssp HHHBSSCHHHHHHHHHTTCCCCCCCB-CSSEEEEEECCEEEES--SC-EEECGGGSCB-TTEEEEECCCCCEEEECCCEE
T ss_pred eeecCcCHHHHHHHHHcCCCCCCccc-cCcEEEEEEEccCccc--cc-ccccHHHHhC-CCCEEEEeccCCCCCCCeEEE
Confidence 77779999999999999999876443 3457777877653221 11 1115556666 998888888766666889999
Q ss_pred EEEEcCCHHHHHHHHHHhhccCC
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDS 261 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~ 261 (437)
|+++|+|.++|+++++++++.++
T Consensus 366 v~~~g~~~~~a~~~~~~~~~~i~ 388 (391)
T 1kjq_A 366 ALATAESVVDAIERAKHAAGQVK 388 (391)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCE
T ss_pred EEEecCCHHHHHHHHHHHHhhhe
Confidence 99999999999999999998775
No 23
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=100.00 E-value=1.6e-32 Score=281.26 Aligned_cols=255 Identities=25% Similarity=0.329 Sum_probs=202.5
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC----CCCcEEEeeccCCCeEEEEEEEEcC-
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG----FDRGLYVEKWAPFVKELAVIVVRGR- 77 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~----~~~~~lvEe~I~g~~E~sv~~~~d~- 77 (437)
+.+.+++.++++++|||+||||..++ ||+|+++|+|.+|+.++++.+.. ....++||+||+++.|+++.++++.
T Consensus 142 ~~~~~~~~~~~~~~g~P~vvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~ 220 (433)
T 2dwc_A 142 ATTLDELYEACEKIGYPCHTKAIMSS-SGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEVTELAVRHFD 220 (433)
T ss_dssp ESSHHHHHHHHHHHCSSEEEEECCC-------EEECSGGGHHHHHHC---------CCEEEEECCCCSEEEEECCEEEEC
T ss_pred eCCHHHHHHHHHhcCCCEEEEECCCc-CCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeEEEEEEeccc
Confidence 57889999999999999999997665 99999999999999999987642 1345999999995599999999876
Q ss_pred -CCc--eEEeeeeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 78 -DKS--ILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 78 -~G~--~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
+|+ ..+++..++....++....+.|++++++..+++.+++.+++++||++|++++||+++++ .+||+|||||++++
T Consensus 221 ~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R~~~~ 299 (433)
T 2dwc_A 221 ENGEIVTTFPKPVGHYQIDGDYHASWQPAEISEKAEREVYRIAKRITDVLGGLGIFGVEMFVKGD-KVWANEVSPRPHDT 299 (433)
T ss_dssp TTSCEEEEEECCEEEEESSSSEEEEEESCCCCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEETT-EEEEEEEESSCCGG
T ss_pred CCCCEeEEEecccceEEEcCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEeCCcCCC
Confidence 787 44555556655567777778899999999999999999999999999999999999976 79999999999998
Q ss_pred CCceeee--ccccHHHHHHHHHhCCCCCC-------CCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEe
Q 013729 155 GHHTIES--CYTSQFEQHMRAVVGLPLGD-------PSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWY 225 (437)
Q Consensus 155 g~~~~~~--~~~~~~~~~~~~a~G~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~ 225 (437)
++++... +++|+++.+++.++|.+++. ......++++.++++...+ .+ +...+++++...|++.++++
T Consensus 300 ~~~~~~~~~~g~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~a~~~~v~~~~~~--~~-~~i~g~~~~~~~pg~~v~~~ 376 (433)
T 2dwc_A 300 GMVTLASHPPGFSEFALHLRAVLGLPIPGEWVDGYRLFPMLIPAATHVIKAKVSG--YS-PRFRGLVKALSVPNATVRLF 376 (433)
T ss_dssp GGGHHHHSCTTCSHHHHHHHHHHTCCCCCEEETTEEEECCSSCEEEEEEECSSCE--ES-CEEECHHHHTTSTTEEEEEC
T ss_pred cceehhHhccCCCHHHHHHHHHcCCCCCcccccccccccccccEEEEEEEcCCCC--cC-cCcchHHHHhhCCCcEEEEe
Confidence 8777554 48999999999999999874 1112245777788775422 11 11125666778899988998
Q ss_pred ccccccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 226 DKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 226 ~~~~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
+++....++++|+|++.|+|+++|+++++++.+.+++
T Consensus 377 ~~~~~~~~~~lg~v~~~g~~~~ea~~~~~~~~~~i~~ 413 (433)
T 2dwc_A 377 GKPEAYVGRRLGIALAWDKDVEVAKRKAEMVAHMIEL 413 (433)
T ss_dssp CCSEECTTCEEEEEEEECSSHHHHHHHHHHHHHTCEE
T ss_pred cCCCCCCCCeEEEEEEEeCCHHHHHHHHHHHHhheEE
Confidence 8877777899999999999999999999999998764
No 24
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=100.00 E-value=8.8e-33 Score=276.82 Aligned_cols=243 Identities=32% Similarity=0.560 Sum_probs=167.1
Q ss_pred HHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEee
Q 013729 6 LESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYP 85 (437)
Q Consensus 6 ~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~ 85 (437)
.+|+.++++++|||+|+||..++++|+|+++++|.+|+.++++.+.. ...+++||||++++|+++.+++|.+|++..++
T Consensus 115 ~~~~~~~~~~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~-~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~ 193 (365)
T 2z04_A 115 RDEIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDK-EESFIIEEFVKFEAEISCIGVRDREGKTYFYP 193 (365)
T ss_dssp -------------CEEEECC-------------------------------CEEEECCCCSEEEEEEEEECTTCCEEECC
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhcc-CCCEEEEccCCCCEEEEEEEEECCCCCEEEEC
Confidence 67888888999999999997765589999999999999998876532 24599999999559999999998889988888
Q ss_pred eeeeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeecccc
Q 013729 86 VVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTS 165 (437)
Q Consensus 86 ~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~~~~~~ 165 (437)
..+...+.+.....+.|+++ .+++.+++.+++++||++|++++||+++++|++|++|||||++++++++..+++.+
T Consensus 194 ~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~lg~~G~~~vd~~~~~~g~~~~iEiN~R~~~~~~~~~~~~~~~ 269 (365)
T 2z04_A 194 QPFNKHEEGILIYNYVPYAK----LKEAEEITKRLMELLDIVGVFTVEFFLLKDGRVLINEFAPRVHNTGHWTLDGAYTS 269 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEC----CHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHHHHBSSC
T ss_pred CEEEEEeCCEeEEEECCHhH----HHHHHHHHHHHHHHcCCEEEEEEEEEEeCCCcEEEEEeccCcCCCceEEeeccccC
Confidence 88777666665556677766 55689999999999999999999999998888999999999999889887788899
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCceEEEeccccccCCceeEEEEEEcCC
Q 013729 166 QFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSS 245 (437)
Q Consensus 166 ~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~G~Vi~~G~s 245 (437)
++++++++++|.+++..... .++++.++++..... . .++.+...|++++++||+ ...+++++|+|++.|+|
T Consensus 270 ~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~g~-~~~~~~~lg~v~~~g~~ 340 (365)
T 2z04_A 270 QFENLLRAITEMPLGSTELK-LPSGMVNILGKSYEE---I----PLKEILSVEGAKLYWYGK-EKKPRRKVGHVNVVGRS 340 (365)
T ss_dssp HHHHHHHHHTTCCCCCCCBS-SCEEEEEEESCCGGG---S----CHHHHTTSTTEEEEECCC-CCCTTCEEEEEEEECSS
T ss_pred HHHHHHHHHhCCCCCCcccc-CCEEEEEEECCcccc---c----hHHHHhcCCCCEEEecCC-CCCCCCeEEEEEEecCC
Confidence 99999999999999876543 347788888764211 1 444555678888889876 66779999999999999
Q ss_pred HHHHHHHHHHhhccCCc
Q 013729 246 MGLVESRLNSLLKEDSS 262 (437)
Q Consensus 246 ~~eA~~k~~~a~~~i~~ 262 (437)
.++|.++++++.+++++
T Consensus 341 ~~~a~~~~~~~~~~i~~ 357 (365)
T 2z04_A 341 KEEVVEKVERVFTLLKG 357 (365)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999998764
No 25
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=100.00 E-value=1.1e-32 Score=289.86 Aligned_cols=286 Identities=17% Similarity=0.239 Sum_probs=216.1
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCCc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~d~~G~ 80 (437)
+.+.+|+.++++++|||+||||+.++ ||+||++|+|.+||.++++.+.. ..+.++||+||+|++|++|+++.|.+|+
T Consensus 230 v~s~eea~~~a~~iGyPvVVKp~~Gg-GGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~rei~V~vl~D~~G~ 308 (587)
T 3jrx_A 230 VKDVDEGLEAAERIGFPLMIKASEGG-GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGN 308 (587)
T ss_dssp CCSHHHHHHHHHHHCSSEEEEETTCC-SSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECSSSC
T ss_pred cCCHHHHHHHHHhcCCeEEEEeCCCC-CCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCC
Confidence 67899999999999999999998877 99999999999999999987642 1345999999998899999999998888
Q ss_pred eEEeee-eeeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce
Q 013729 81 ILCYPV-VETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (437)
Q Consensus 81 ~~~~~~-~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~ 158 (437)
++.+.. .+.+++.+.......|++ ++++..+++.+.+.++++++||+|++++||+++++|++||+|||||++++.+++
T Consensus 309 vv~l~~rd~siqrr~qk~ie~aPa~~l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~dG~~yflEINpRl~~e~~vt 388 (587)
T 3jrx_A 309 AVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCT 388 (587)
T ss_dssp EEEEEEEEEEEESSSCEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECSSSCEEEEEEESSCCTTHHHH
T ss_pred EEEEeeeeccccccccceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEeCCCCCcccee
Confidence 766543 356666666666678988 799999999999999999999999999999999889999999999999866666
Q ss_pred eeeccccHHHHHHHHHhCCCCCCC-------------------------CCCCCcEEEEEeeccCccCCCccccccchhh
Q 013729 159 IESCYTSQFEQHMRAVVGLPLGDP-------------------------SMKTPAAIMYNLLGEAEGERGFYLAHQLIGK 213 (437)
Q Consensus 159 ~~~~~~~~~~~~~~~a~G~~l~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 213 (437)
...+|+|+++++++.++|.||+.. ....++++.++++++ +|...|.|..+.+..
T Consensus 389 e~~tGvdlv~~~lria~G~pL~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~ghaie~Ri~ae-dp~~~f~p~~G~i~~ 467 (587)
T 3jrx_A 389 EMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSE-NPDEGFKPSSGTVQE 467 (587)
T ss_dssp HHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCSSSCSSCCCCCSEEEEEEEEC-----------CCCCEE
T ss_pred ccccCCCHHHHHHHHHCCCCcccchhcccccccccccccccccccccccCCCCceEEEEeeccc-CccccCCCCCcEEEE
Confidence 668899999999999999999721 112356788999987 455567764333333
Q ss_pred hhccCCc-eEEE-ecc---ccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEc-cCCCHHHH
Q 013729 214 ALSIPGA-TVHW-YDK---PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMG-SDSDLPVM 285 (437)
Q Consensus 214 ~~~~pg~-~~~~-~~~---~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~g-s~sD~~~~ 285 (437)
+..|+. .+.. ++. ..+.+ ++.+|+++++|.|+++|++++.++++++.+ .| -.++.+.+
T Consensus 468 -~~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~i-------------~g~~~tn~~~~ 533 (587)
T 3jrx_A 468 -LNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSI-------------RGDFRTTVEYL 533 (587)
T ss_dssp -EECSSCTTEEEEECCC----------CCEEEEEEEESSHHHHHHHHHHHHHHHHH-------------SSTTSSTTHHH
T ss_pred -EEeCCCCceEEeccccccCCcCcccCcccceEEEEcCCHHHHHHHHHHHHhccEE-------------eCCCCCcHHHH
Confidence 223432 2221 111 01222 567899999999999999999999998653 44 36788999
Q ss_pred HHHHHHHHHcCCcEEEEEe
Q 013729 286 KDAAKILTMFSVPHEVRIV 304 (437)
Q Consensus 286 ~~~~~~L~~~G~~~~~~v~ 304 (437)
..+...-......++++++
T Consensus 534 ~~~~~~~~f~~g~~~t~~~ 552 (587)
T 3jrx_A 534 INLLETESFQNNDIDTGWL 552 (587)
T ss_dssp HHHHTSHHHHTTCSCCGGG
T ss_pred HHHhCChhhccCCcchhHH
Confidence 8887666665556555543
No 26
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=100.00 E-value=3.8e-32 Score=279.53 Aligned_cols=280 Identities=17% Similarity=0.207 Sum_probs=216.5
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+.+.+|+.++++++|||+||||..++ ||+||++|+|++|+.++++.+... .+.+++|+||+|.+|++++++.
T Consensus 141 ~~~~~~e~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 219 (446)
T 3ouz_A 141 ALAGAEAAKKLAKEIGYPVILKAAAGG-GGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIG 219 (446)
T ss_dssp SCCSHHHHHHHHHHHCSSEEEEETTCC-TTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHhCCCEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEE
Confidence 468999999999999999999998776 999999999999999998865311 2349999999988999999999
Q ss_pred cCCCceEEeeee-eeEEecCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 76 GRDKSILCYPVV-ETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 76 d~~G~~~~~~~~-e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
|.+|+++.++.. +...+.+.......|+ .++++..+++.+++.++++++|++|++++||+++++|++||+|||||+++
T Consensus 220 d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~~iEiNpR~~g 299 (446)
T 3ouz_A 220 DSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMNTRLQV 299 (446)
T ss_dssp CTTSCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCT
T ss_pred cCCCCEEEEeeceeeeeecCceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeCCCCEEEEEeECCCCC
Confidence 988888766544 4455556656667888 49999999999999999999999999999999998888999999999998
Q ss_pred CCCceeeeccccHHHHHHHHHhCCCCCCCC--CCCCcEEEEEeeccCccCCCccccccchhhhhccC---CceE--EEec
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPS--MKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP---GATV--HWYD 226 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p---g~~~--~~~~ 226 (437)
+.+++...+|+|+++++++.++|.+++... ...++++.++++++. + ..|.|..+.+. ....| ++.+ ..+.
T Consensus 300 ~~~~~~~~~G~dl~~~~~~~~~G~~l~~~~~~~~~g~ai~~ri~ae~-~-~~~~p~~G~i~-~~~~p~~~~vr~~~~~~~ 376 (446)
T 3ouz_A 300 EHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHSIECRITAED-S-KTFLPSPGKIT-KYIPPAGRNVRMESHCYQ 376 (446)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCCCCGGGCCCCSEEEEEEEESBC-T-TTCCBCCEECS-EEECCCSTTEEEEECCCT
T ss_pred cceeeeeeeCCCHHHHHHHHHCCCCCCcCCCCCcceEEEEEEeeccC-C-CccCCCCcEEe-EEecCCCCCEEEEccccc
Confidence 655566678999999999999999998211 123456677887764 3 34554322222 22334 3333 2222
Q ss_pred cccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCc
Q 013729 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVP 298 (437)
Q Consensus 227 ~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~ 298 (437)
+..+.+ ++++|+|+++|+|++||++++.++++++. |.|-.++.+.+..+...-......
T Consensus 377 G~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~-------------i~g~~~~~~~~~~~~~~~~~~~~~ 437 (446)
T 3ouz_A 377 DYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELL-------------ISGIKTTKDFHLSMMENPDFINNN 437 (446)
T ss_dssp TCEECTTTCCEEEEEEEEESSHHHHHHHHHHHHHHCE-------------EESSCCTHHHHHHHHTCHHHHTTC
T ss_pred CCEeCCccCCcceEEEEEcCCHHHHHHHHHHHHhhCE-------------EeCccCCHHHHHHHhCChhhccCC
Confidence 223333 45799999999999999999999998764 466788899988887654444333
No 27
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=100.00 E-value=1.8e-32 Score=286.94 Aligned_cols=285 Identities=18% Similarity=0.238 Sum_probs=201.9
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCCc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~d~~G~ 80 (437)
+.+.+|+.++++++|||+||||+.++ ||+||++|+|.+||.++++.+.. ..+.++||+||+|++|++++++.|.+|+
T Consensus 214 v~s~~ea~~~a~~igyPvVVKp~~gg-GG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g~rei~V~vl~d~~G~ 292 (540)
T 3glk_A 214 VKDVDEGLEAAERIGFPLMIKASEGG-GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGN 292 (540)
T ss_dssp CCSHHHHHHHHHHHCSSEEEEETTCC-----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSSEEEEEEEEEECTTSC
T ss_pred cCCHHHHHHHHHhcCCcEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCC
Confidence 67899999999999999999998877 99999999999999999987642 1345999999998799999999998888
Q ss_pred eEEeeee-eeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce
Q 013729 81 ILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (437)
Q Consensus 81 ~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~ 158 (437)
++.+... +.+++.+.......|+. ++++..+++.+.+.++++++||+|++++||+++++|++||+|||||++++.+++
T Consensus 293 vv~l~~rd~s~qr~~~k~ie~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~VEf~~d~dg~~~~lEiNpR~~~~~~vt 372 (540)
T 3glk_A 293 AVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCT 372 (540)
T ss_dssp EEEEEEEEEEEC---CCSEEEESCTTSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEEEEEECSCCTTHHHH
T ss_pred EEEEeceeeeeeecccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcCCCCEEEEEEECCCCCcchhh
Confidence 7665433 45555555445567888 799999999999999999999999999999999889999999999999876666
Q ss_pred eeeccccHHHHHHHHHhCCCCCCCC-------------------------CCCCcEEEEEeeccCccCCCccccccchhh
Q 013729 159 IESCYTSQFEQHMRAVVGLPLGDPS-------------------------MKTPAAIMYNLLGEAEGERGFYLAHQLIGK 213 (437)
Q Consensus 159 ~~~~~~~~~~~~~~~a~G~~l~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 213 (437)
...+|+|+++++++.++|.||+... ...++++.++++++ +|...|.|..+.+..
T Consensus 373 e~~tGvdl~~~~lr~a~G~pL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~aie~ri~ae-dp~~~f~p~~G~i~~ 451 (540)
T 3glk_A 373 EMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSE-NPDEGFKPSSGTVQE 451 (540)
T ss_dssp HHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCSSCCSCCCSCCC----CCCSEEEEEEEC-------------CCEEE
T ss_pred HhHhCCCHHHHHHHHHCCCCcccccccccccccccccccccccccccccCCCceeEEEEEEecc-CCcccccCCceEEEE
Confidence 6688999999999999999997211 12356788898876 454567764333332
Q ss_pred hhccCCc-eEEE-ecc---ccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEc-cCCCHHHH
Q 013729 214 ALSIPGA-TVHW-YDK---PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMG-SDSDLPVM 285 (437)
Q Consensus 214 ~~~~pg~-~~~~-~~~---~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~g-s~sD~~~~ 285 (437)
...|+. .+.. ++. ..+.+ +..+++++++|.|+++|++++.++++++.+ .| -.++.+.+
T Consensus 452 -~~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~i-------------~g~~~tn~~~~ 517 (540)
T 3glk_A 452 -LNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSI-------------RGDFRTTVEYL 517 (540)
T ss_dssp -CCCSSCCSEEEEEEC------------CEEEEEEEESSHHHHHHHHHHHHHHHTC-------------C----HHHHHH
T ss_pred -EEcCCCCcEEEEeccccCCCCCCccCcccceEEEEcCCHHHHHHHHHHHHhccEE-------------ecccCCcHHHH
Confidence 223432 1211 111 11222 567899999999999999999999998763 33 25678888
Q ss_pred HHHHHHHHHcCCcEEEEE
Q 013729 286 KDAAKILTMFSVPHEVRI 303 (437)
Q Consensus 286 ~~~~~~L~~~G~~~~~~v 303 (437)
..+...-......+++++
T Consensus 518 ~~~~~~~~f~~~~~~t~~ 535 (540)
T 3glk_A 518 INLLETESFQNNDIDTGW 535 (540)
T ss_dssp HHHHHSHHHHHTCC----
T ss_pred HHHhCChhhcCCCccchh
Confidence 887766555544555554
No 28
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.98 E-value=1.9e-30 Score=267.11 Aligned_cols=287 Identities=16% Similarity=0.184 Sum_probs=214.7
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+++.+++.++++++|||+||||..++ ||+||++|+|.+|+.++++.+.. ....++|||||+|++|+++.++.
T Consensus 136 ~~~~~~~~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 214 (451)
T 1ulz_A 136 VLKSLEEAKALAREIGYPVLLKATAGG-GGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLG 214 (451)
T ss_dssp SCCCHHHHHHHHHHHCSSEEEEECSSS-SCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHcCCCEEEEECCCC-CCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEEE
Confidence 467899999999999999999998776 89999999999999998876521 12359999999987899999999
Q ss_pred cCCCceEEeeee-eeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 76 GRDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 76 d~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
+.+|+++.++.. +...+.+.......|+. ++++..+++.+.+.++++++|++|++++||+++++|++||+|+|||+++
T Consensus 215 ~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~viEiN~R~~~ 294 (451)
T 1ulz_A 215 DKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQV 294 (451)
T ss_dssp CTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEECSCCT
T ss_pred cCCCCEEEEeeeecccccccccceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeCCCCEEEEEeeCCCCc
Confidence 888887655432 23344454445567886 9999999999999999999999999999999998889999999999998
Q ss_pred CCCceeeeccccHHHHHHHHHhCCCCCCCC--CC-CCcEEEEEeeccCccCCCccccccchhhh--hccCCc--eEEEec
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPS--MK-TPAAIMYNLLGEAEGERGFYLAHQLIGKA--LSIPGA--TVHWYD 226 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~--~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~pg~--~~~~~~ 226 (437)
+.+++...+++|+++.+++.++|.+++... .. ...+++.++++.. +...+.|....+..+ ...|++ +.++++
T Consensus 295 ~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~ 373 (451)
T 1ulz_A 295 EHPVSEMVTGIDIVKWQIKIAAGEPLTIKQEDVKFNGYAIECRINAED-PKKNFAPSTRVIERYYVPGGFGIRVEHAAAR 373 (451)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCCCCCGGGCCCCSEEEEEEEESEE-GGGTTEECCSBCCSEECCCSTTEEEEECCCT
T ss_pred cchHHHHHhCCCHHHHHHHHHcCCCCCCccccCCCceEEEEEeccccC-cccCcCCCCceeceEECCCCCCcccccCccC
Confidence 755555678999999999999999987321 11 2345667777643 211233211111111 112445 344555
Q ss_pred cccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013729 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 303 (437)
Q Consensus 227 ~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v 303 (437)
+..+.+ ++++|+|+++|+|.+||+++++++++.+++ .|-.+|.+.+..+...-......+++++
T Consensus 374 g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~-------------~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 439 (451)
T 1ulz_A 374 GFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEI-------------TGVKTTIPLLINIMKEKDFKAGKFTTKY 439 (451)
T ss_dssp TCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEE-------------CSSCCSHHHHHHHHHCHHHHHTCCCTTT
T ss_pred CCEecccccchheEEEEECCCHHHHHHHHHHHHhhcEE-------------eCccCCHHHHHHHhCCHHHhcCCCcchh
Confidence 555554 678999999999999999999999988763 2346788888887665454444555443
No 29
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.97 E-value=5.9e-30 Score=263.46 Aligned_cols=285 Identities=17% Similarity=0.199 Sum_probs=212.4
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+.+.+++.++++++|||+||||..++ ||+||++|+|.+|+.++++.+.. ....++||+||+|.+|+++.++.
T Consensus 136 ~~~~~~~~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 214 (451)
T 2vpq_A 136 LMKDVSEAKKIAKKIGYPVIIKATAGG-GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVG 214 (451)
T ss_dssp CBSCHHHHHHHHHHHCSSEEEEETTCC-TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEEE
T ss_pred CcCCHHHHHHHHHhcCCcEEEEECCCC-CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEEE
Confidence 467899999999999999999998776 99999999999999998876521 12449999999987899999999
Q ss_pred cCCCceEEeeee-eeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEe-CCCcEEEEEEcCCCC
Q 013729 76 GRDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWT-NNGQILLNEVAPRPH 152 (437)
Q Consensus 76 d~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~-~dg~~~viEiNpR~~ 152 (437)
+.+|+++.++.. +...+.+.......|++ ++++..+++.+++.++++++|++|++++||+++ ++|++||+|||||++
T Consensus 215 ~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g~~~viEiN~R~~ 294 (451)
T 2vpq_A 215 DSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQ 294 (451)
T ss_dssp CTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCC
T ss_pred cCCCCEEEEeccccchhccccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCC
Confidence 888887665532 22334444445567887 999999999999999999999999999999999 788999999999999
Q ss_pred CCCCceeeeccccHHHHHHHHHhCCCCCCCCC--C-CCcEEEEEeeccCccCCCccccccchhhhhccC---Cc--eEEE
Q 013729 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP---GA--TVHW 224 (437)
Q Consensus 153 ~sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p---g~--~~~~ 224 (437)
++.+++..++++|+++.+++.++|.+++.... . ...++++++++.. +...+.|.. +.-.....| ++ ++++
T Consensus 295 ~~~~~~~~~~g~dl~~~~~~~~~G~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~p~~-g~i~~~~~~~~~~v~~~~~~ 372 (451)
T 2vpq_A 295 VEHPVTEMVTGIDLVKLQLQVAMGDVLPYKQEDIKLTGHAIEFRINAEN-PYKNFMPSP-GKIEQYLAPGGYGVRIESAC 372 (451)
T ss_dssp TTHHHHHHHHCCCHHHHHHHHHTTCCCSCCGGGCCCCSEEEEEEEESEE-GGGTTEECC-SBCSEEECCCSTTEEEECCC
T ss_pred CceehhhHHhCCCHHHHHHHHHCCCCCCCcccccCcCceEeeeEeeeec-cccccCCCC-CEEeEEECCCCCCccccccc
Confidence 87666666789999999999999999874321 1 2346677777653 222233211 111111223 43 3345
Q ss_pred eccccc--cCCceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE
Q 013729 225 YDKPEM--RQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 302 (437)
Q Consensus 225 ~~~~~~--~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~ 302 (437)
+.+..+ ..++++|+|+++|+|.++|+++++++++.++ +.|-.++.+....+...-......++++
T Consensus 373 ~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
T 2vpq_A 373 YTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFV-------------VLGIDTTIPFHIKLLNNDIFRSGKFNTN 439 (451)
T ss_dssp CTTCBCCTTTCCEEEEEEEEESSHHHHHHHHHHHHHTCE-------------EESSCCSHHHHHHHHTCHHHHHTCCCTT
T ss_pred ccCCccCcccccccEEEEEEeCCHHHHHHHHHHHHhccE-------------EeCcCCCHHHHHHHhCCHhhhcCCCccH
Confidence 555443 2367999999999999999999999998765 3455677888777765434333344333
No 30
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.97 E-value=1.3e-31 Score=287.36 Aligned_cols=285 Identities=21% Similarity=0.243 Sum_probs=215.3
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+.+.+++.++++++|||+||||..++ ||+||++|+|++|+.++++.+... ++.+++|+||+|.+|++++++.|
T Consensus 164 ~~s~~e~~~~a~~igyPvvvKp~~G~-Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~reiev~v~~d 242 (675)
T 3u9t_A 164 AQDLETFRREAGRIGYPVLLKAAAGG-GGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFAD 242 (675)
T ss_dssp CCCTTHHHHHHHHSCSSBCCBCCC-------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCBCEEEEEEEC
T ss_pred CCCHHHHHHHHHhCCCcEEEEECCCC-CCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCcEEEEEEEEc
Confidence 56889999999999999999998876 999999999999999999765321 24599999999889999999999
Q ss_pred CCCceEEeeee-eeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.+|+++.+... +.+++.+.......|++ ++++..+++.+++.++++++||+|++++||+++++|++||+|||||++++
T Consensus 243 ~~G~vv~l~~rd~s~qr~~qk~ie~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~dG~~~~iEiNpR~~~~ 322 (675)
T 3u9t_A 243 RHGHCLYLNERDCSIQRRHQKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEMNTRLQVE 322 (675)
T ss_dssp SSSCEEEEEEEECCCBSSSSBCEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBCTTSCBCBCEEESSCCTT
T ss_pred CCCCEEEEeccccceeeccceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcCCCCEEEEeccccccCC
Confidence 88887765433 34555565556677887 99999999999999999999999999999999988899999999999985
Q ss_pred CCceeeeccccHHHHHHHHHhCCCCCCCCCC---CCcEEEEEeeccCccCCCccccccchhhhh---ccCCceEEE--ec
Q 013729 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSMK---TPAAIMYNLLGEAEGERGFYLAHQLIGKAL---SIPGATVHW--YD 226 (437)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~pg~~~~~--~~ 226 (437)
.+++...+|+|+++++++.++|.+++..... .++++.++++++. |...|.|..+.+..+. ..|++.+.. +.
T Consensus 323 ~~~te~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~aed-p~~~f~P~~G~l~~~~~p~~~~gvr~d~~~~~ 401 (675)
T 3u9t_A 323 HPVTEAITGLDLVAWQIRVARGEALPLTQEQVPLNGHAIEVRLYAED-PEGDFLPASGRLMLYREAAAGPGRRVDSGVRE 401 (675)
T ss_dssp HHHHHHTTTCCHHHHHHHHHTTCCCSCCTTTCCCCSEEEEEEEESCC-TTTTSCCCCCBCSEEECCCCCTTEEEEESCCT
T ss_pred chhhhhhcCCCHHHHHHHHHCCCCCCCCccccccCcceeEEEEEecc-CcccccCCCCEEEEEECCCCCCCEEEEecccC
Confidence 4445557799999999999999999865432 3557778888763 4445655333333221 124554332 33
Q ss_pred cccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE
Q 013729 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 302 (437)
Q Consensus 227 ~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~ 302 (437)
+..+.+ ++++|+++++|+|+++|++++.++++++. |.|-.++.+.+..+...-......++++
T Consensus 402 G~~v~~~~ds~la~vi~~g~~r~~a~~~~~~al~~~~-------------i~g~~tn~~~~~~~~~~~~~~~~~~~t~ 466 (675)
T 3u9t_A 402 GDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETS-------------VGGLRTNLAFLRRILGHPAFAAAELDTG 466 (675)
T ss_dssp TCBCCTTSCCEEEEEEEEESSHHHHHHHHHHHHHTCE-------------EESSCCTHHHHHHHHTCHHHHTTCCCTT
T ss_pred CCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhcEE-------------EECccCCHHHHHHHhCCHHHhCCCcccc
Confidence 344444 57899999999999999999999999865 3566788888888766544444444433
No 31
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.97 E-value=4e-31 Score=283.81 Aligned_cols=282 Identities=17% Similarity=0.195 Sum_probs=167.8
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+.+.+++.++++++|||+||||+.++ ||+||++|+|++|+.++++.+... ++.++||+||+|.+|++++++.
T Consensus 137 ~~~s~~e~~~~a~~igyPvVvKp~~gg-ggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~ 215 (681)
T 3n6r_A 137 LIEDADEAVKISNQIGYPVMIKASAGG-GGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLC 215 (681)
T ss_dssp -------------------------------------------------------------------CCSCEEEEEEEEC
T ss_pred CcCCHHHHHHHHHhcCCcEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEE
Confidence 356889999999999999999998876 999999999999999998865321 2459999999988999999999
Q ss_pred cCCCceEEeeee-eeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 76 GRDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 76 d~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
|.+|+++.++.. +.+++.+.......|++ ++++..+++.+.+.++++++||+|++++||+++++|++||+|||||+++
T Consensus 216 d~~G~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~dg~~~~lEiNpR~~~ 295 (681)
T 3n6r_A 216 DSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDGQKNFYFLEMNTRLQV 295 (681)
T ss_dssp CSSSCCEEEEEEECCCEETTEECEEEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTSCCCCCEEECSCCT
T ss_pred eCCCCEEEEeeeecceeccCccEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeCCCCEEEEecccccCC
Confidence 988888777654 34566666666678987 9999999999999999999999999999999998899999999999998
Q ss_pred CCCceeeeccccHHHHHHHHHhCCCCCCCCC---CCCcEEEEEeeccCccCCCccccccchhhhhccC------------
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP------------ 218 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p------------ 218 (437)
+.+++...+|+|+++++++.++|.+++.... ..++++.++++++. |...|.|..+.+.. +..|
T Consensus 296 ~~~~te~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~aed-p~~~f~p~~G~i~~-~~~p~~~~~~~~~~~~ 373 (681)
T 3n6r_A 296 EHPVTELITGVDLVEQMIRVAAGEPLSITQGDVKLTGWAIENRLYAED-PYRGFLPSIGRLTR-YRPPAETAAGPLLVNG 373 (681)
T ss_dssp THHHHHHHHTCCHHHHHHHHHTSCCCSSCTTTCCCCSEEEEEEEESEE-GGGTTEECCEECSC-EECCCC----------
T ss_pred CcHHhHHHhCCCHHHHHHHHHCCCCCCCCccccceeEEEEEEEEecCC-cccccCCCCcEEEE-EECCCCCccccccccc
Confidence 6555556789999999999999999875432 23456778888763 43446553322222 2223
Q ss_pred -----------Cce--EEEeccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHH
Q 013729 219 -----------GAT--VHWYDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLP 283 (437)
Q Consensus 219 -----------g~~--~~~~~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~ 283 (437)
++. ..++.+..+.+ +..+|+++++|.|+++|++++.++++++. |.|-.++.+
T Consensus 374 ~w~~d~~~~~~~vr~d~~~~~g~~v~~~yd~~iak~i~~g~~r~~a~~~~~~al~~~~-------------i~g~~tn~~ 440 (681)
T 3n6r_A 374 KWQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPTRAAAIEAMRIALDSFE-------------VEGIGHNLP 440 (681)
T ss_dssp ----------CCEEEEESCCTTCEECTTSCCEEEEEEEEESSHHHHHHHHHHHHHHCE-------------ECSSCCSHH
T ss_pred ccccccccCCCcEEEEccccCCCccCCCCCCceeEEEEEcCCHHHHHHHHHHHHhcCE-------------EECccCCHH
Confidence 232 22333344443 56789999999999999999999998764 456677888
Q ss_pred HHHHHHHHHHHcCCcE
Q 013729 284 VMKDAAKILTMFSVPH 299 (437)
Q Consensus 284 ~~~~~~~~L~~~G~~~ 299 (437)
.+..+...-......+
T Consensus 441 ~~~~~~~~~~f~~~~~ 456 (681)
T 3n6r_A 441 FLSAVMDHPKFISGDM 456 (681)
T ss_dssp HHHHHHHCHHHHHCCC
T ss_pred HHHHHhCCHhhccCCc
Confidence 8888765544433333
No 32
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.97 E-value=3.1e-29 Score=257.96 Aligned_cols=277 Identities=17% Similarity=0.226 Sum_probs=208.3
Q ss_pred ccCCHHHH-HHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEE
Q 013729 2 EVNDLESA-RRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVV 74 (437)
Q Consensus 2 ~v~s~~e~-~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~ 74 (437)
.+++.+++ .++++++|||+||||..++ ||+||++|+|.+|+.++++.+.. ....++|||||+|++|++++++
T Consensus 137 ~~~~~~~~~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~~ 215 (449)
T 2w70_A 137 PLGDDMDKNRAIAKRIGYPVIIKASGGG-GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVL 215 (449)
T ss_dssp CCCSCHHHHHHHHHHHCSSEEEEETTCC-TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHhCCcEEEEECCCC-CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEEE
Confidence 35788999 9999999999999998776 99999999999999998876521 1234999999998799999999
Q ss_pred EcCCCceEEeeee-eeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCC
Q 013729 75 RGRDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (437)
Q Consensus 75 ~d~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~ 152 (437)
.+.+|+++.++.. +...+.+.......|+. ++++..+++.+.+.++++++|++|++++||++++ |.+||+|||||++
T Consensus 216 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~~~~viEiN~R~~ 294 (449)
T 2w70_A 216 ADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFEN-GEFYFIEMNTRIQ 294 (449)
T ss_dssp ECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEECSCC
T ss_pred EcCCCCEEEEeceecccccCCcceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCEEEEEEECCCC
Confidence 9888887665532 33444555555667886 9999999999999999999999999999999997 7799999999999
Q ss_pred CCCCceeeeccccHHHHHHHHHhCCCCCCCCC--C-CCcEEEEEeeccCccCCCccccccchhhh--hccCCce--EEEe
Q 013729 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQLIGKA--LSIPGAT--VHWY 225 (437)
Q Consensus 153 ~sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~pg~~--~~~~ 225 (437)
++.+++...+++|+++.+++.++|.+++.... . ...+++.++++... ..+.|....+..+ ...|++. .+++
T Consensus 295 ~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~i~~~~~~~~~~v~~~~~~~ 372 (449)
T 2w70_A 295 VEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP--NTFLPSPGKITRFHAPGGFGVRWESHIY 372 (449)
T ss_dssp TTHHHHHHHHCCCHHHHHHHHHHTCCCSSCGGGCCCCSEEEEEEEECBCT--TTCCBCCEECCEEECCCSTTEEEECCCC
T ss_pred ccchHHHHHhCCCHHHHHHHHHCCCCCCCchhccccceeEEEEeecccCc--cccCCCCCEeceEECCCCCcEEEEeccc
Confidence 87556666789999999999999999863211 1 23456677776532 2233211112111 1124432 3345
Q ss_pred cccccc--CCceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHc
Q 013729 226 DKPEMR--QQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMF 295 (437)
Q Consensus 226 ~~~~~~--~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~ 295 (437)
++..+. .++++|+|+++|+|.++|+++++++++.+++ .|-.+|...+..+...-+..
T Consensus 373 ~g~~~~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~-------------~g~~~~i~~~~~~~~~~~~~ 431 (449)
T 2w70_A 373 AGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELII-------------DGIKTNVDLQIRIMNDENFQ 431 (449)
T ss_dssp TTCEECSSSCSEEEEEEEEESSHHHHHHHHHHHHHHCEE-------------ESSCCSHHHHHHHHTCHHHH
T ss_pred cCCEeccccCcceEEEEEEcCCHHHHHHHHHHHHhhcEE-------------eCcCCCHHHHHHHHcChhhc
Confidence 554442 3678999999999999999999999988763 34578888888776544443
No 33
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.97 E-value=4.2e-29 Score=254.34 Aligned_cols=251 Identities=14% Similarity=0.097 Sum_probs=183.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+++.+|+.++++++|||+||||..++ ||+||++|+|.+|+.++++.+.. ..+.++|||||+| +|+++++++
T Consensus 126 ~~~~~~e~~~~~~~~g~PvvvKp~~~~-gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~G-~E~sv~~~~ 203 (412)
T 1vkz_A 126 VAETPEELREKIKKFSPPYVIKADGLA-RGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAG-NELSAMAVV 203 (412)
T ss_dssp EESSHHHHHHHHTTSCSSEEEEESSCC-SSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCcC-cEEEEEEEE
Confidence 367899999999999999999998776 89999999999999999876531 1136999999995 999999998
Q ss_pred cCCCceEEeeeeeeEEecC--c------eEEEEeCCCCCHHHHHHHHHHHHHHHHHc-----CCceEEEEEEEEeCCCcE
Q 013729 76 GRDKSILCYPVVETIHKEN--I------CHIVKAPAAVPWKISELATDVAHKAVSSL-----EGAGIFAVELFWTNNGQI 142 (437)
Q Consensus 76 d~~G~~~~~~~~e~~~~~g--~------~~~~~~P~~l~~~~~~~i~~~a~~i~~al-----g~~G~~~ve~~~~~dg~~ 142 (437)
|++ .++.+...++..+.+ + ....+.|+++++++.+++++++.+++++| +++|++++||+++++| +
T Consensus 204 dg~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~ 281 (412)
T 1vkz_A 204 NGR-NFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGD-P 281 (412)
T ss_dssp ETT-EEEECCCCEECCEEETTTEEEECSCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTE-E
T ss_pred CCC-EEEEeeeeEeeeeccCCCCCCCCCCceEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEECCC-c
Confidence 533 233333223322211 1 12356788899999999999999999999 8899999999999888 9
Q ss_pred EEEEEcCCCCCCCCceee-eccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhhhhccCCce
Q 013729 143 LLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGAT 221 (437)
Q Consensus 143 ~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~ 221 (437)
||+|+|||+++++++++. .+++++.+.+++.+.| ++++.... ...++.++++.........+ +..-.+..|+ +
T Consensus 282 ~viEiN~R~g~~~~~~~~~~~g~d~~~~~~~~~~g-~l~~~~~~-~~~a~~~~l~~~~~~~~~~~---g~~i~l~~~~-~ 355 (412)
T 1vkz_A 282 YILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRG-GKMEPVEP-RGFAVDVVLAARGYPDAPEK---GKEITLPEEG-L 355 (412)
T ss_dssp EEEEEESSCCTTHHHHHHHHCHHHHHHHHHHHHHT-SCCCCCCC-CSEEEEEEEECTTTTTSCCC---CCBCBCCSSC-C
T ss_pred EEEEEecCCCCCcceeehhhcCCCHHHHHHHHhcC-CCcccccc-CCeEEEEEEecCCCCCCCCC---CCEeeeCCCC-c
Confidence 999999999988776544 3567777766666555 46544322 22556677765321111111 1110022366 6
Q ss_pred EEEeccc-----cccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 222 VHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 222 ~~~~~~~-----~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
++++|.. ...+++++|+|+++|+|.+||+++++++++++++
T Consensus 356 v~~~g~~~~~~~~~~~~~~vg~v~~~g~~~~ea~~~~~~~~~~i~~ 401 (412)
T 1vkz_A 356 IFFAGVAEKDGKLVTNGGRVLHCMGTGETKEEARRKAYELAEKVHF 401 (412)
T ss_dssp EEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHHHCBC
T ss_pred EEECcccccCCeEEeCCCcEEEEEEeCCCHHHHHHHHHHHhcceee
Confidence 6666643 3445899999999999999999999999998775
No 34
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.97 E-value=3.3e-28 Score=251.15 Aligned_cols=274 Identities=16% Similarity=0.189 Sum_probs=197.7
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+++.+|+.++++++|||+||||..++ ||+||++|+|.+|+.++++.+.. ....++|||||+|++|++++++.
T Consensus 142 ~~~~~~~~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 220 (461)
T 2dzd_A 142 PVDGLEDVVAFAEAHGYPIIIKAALGG-GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILG 220 (461)
T ss_dssp CCSSHHHHHHHHHHHCSCEEEEESTTC-SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEEE
T ss_pred CcCCHHHHHHHHHhcCCcEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEEE
Confidence 467899999999999999999998776 99999999999999998876421 12459999999987899999999
Q ss_pred cCCCceEE-eeeeeeEEecCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 76 GRDKSILC-YPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 76 d~~G~~~~-~~~~e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
+.+|+++. ++..+...+.+.....+.|+ .++++..+++.+.+.++++++|+.|.+++||++++ |.+||+|||||+++
T Consensus 221 ~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~~~~viEiN~R~~~ 299 (461)
T 2dzd_A 221 DYEGNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG-DEFYFIEVNPRIQV 299 (461)
T ss_dssp CTTCCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET-TEEEEEEEESSCCG
T ss_pred cCCCCEEEEEeccccccccccceEEECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCEEEEEEECCCCC
Confidence 88888653 33334445555555567787 59999999999999999999999999999999997 77999999999997
Q ss_pred CCCceeeeccccHHHHHHHHHhCCCCCCCCC---------CCCcEEEEEeeccCccCCCccccccchhhhh--ccCCceE
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM---------KTPAAIMYNLLGEAEGERGFYLAHQLIGKAL--SIPGATV 222 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~pg~~~ 222 (437)
+.+++...+++|+++.+++.++|.+++.... ..+.++..++... .+...|.|....+.... ..+++.+
T Consensus 300 ~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~~~~~g~~~~~ri~~~-~~~~~~~p~~g~i~~~~~~~~~~v~~ 378 (461)
T 2dzd_A 300 EHTITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRVTTE-DPLNNFMPDTGKIMAYRSGGGFGVRL 378 (461)
T ss_dssp GGHHHHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEEESE-EGGGTTEECCEECSEEECCCCTTEEE
T ss_pred ceeeEEeecCCCHHHHHHHHHcCCCccccccccccccccccceeEEEeeeccc-CCccCccCCCCeeeEEecCCCCCeEe
Confidence 6555555779999999999999999885421 1122333344432 12222333111121111 1122222
Q ss_pred EE---eccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHH
Q 013729 223 HW---YDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKI 291 (437)
Q Consensus 223 ~~---~~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~ 291 (437)
.- +.+..+.+ ++++|+|+++|+|++||+++++++++.+++ .|..+|......+...
T Consensus 379 ~~~~~~~G~~i~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~-------------~g~~~~i~~~~~~~~~ 439 (461)
T 2dzd_A 379 DAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFRI-------------RGIKTNIPFLENVVQH 439 (461)
T ss_dssp EESSCSTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEE-------------ESSCCSHHHHHHHHHS
T ss_pred ecccccCCCCcCcccchhhheeEEEcCCHHHHHHHHHHHHHhcEE-------------eCCcCCHHHHHHHhCC
Confidence 10 11112222 345999999999999999999999998763 3447888876654433
No 35
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.96 E-value=8.8e-28 Score=253.39 Aligned_cols=280 Identities=14% Similarity=0.160 Sum_probs=201.8
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCCc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~d~~G~ 80 (437)
+.+.+|+.++++++|||+||||..++ ||+||++|+|.+|+.++++.+.. ....++|||||+|++|++++++.|.+|+
T Consensus 220 ~~~~~e~~~~~~~~g~PvVvKp~~g~-gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g~~e~sv~vl~d~~G~ 298 (554)
T 1w96_A 220 CTSPEDGLQKAKRIGFPVMIKASEGG-GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGT 298 (554)
T ss_dssp CSSHHHHHHHHHHHCSSEEEEETTCC-TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECTTSC
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCC-CCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCC
Confidence 47899999999999999999998776 99999999999999999887642 1245999999997799999999988788
Q ss_pred eEEeee-eeeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEe-CCCcEEEEEEcCCCCCCCCc
Q 013729 81 ILCYPV-VETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWT-NNGQILLNEVAPRPHNSGHH 157 (437)
Q Consensus 81 ~~~~~~-~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~-~dg~~~viEiNpR~~~sg~~ 157 (437)
++.+.. .+..++.........|+. ++++..+++.+++.+++++||++|++++||+++ ++|++||+|||||++++..+
T Consensus 299 vv~l~~~~~~~~~~~~k~~~~~P~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~~~~ 378 (554)
T 1w96_A 299 NISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPT 378 (554)
T ss_dssp EEEEEEEEEEEEETTEEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTTTHH
T ss_pred EEEEeeeeeeeEeeccceeeeCCCcCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCcceeh
Confidence 765432 234444333333457887 899999999999999999999999999999998 67889999999999986333
Q ss_pred eeeeccccHHHHHHHHHhCCCCCCCC--------------------------------CCCCcEEEEEeeccCccCCCcc
Q 013729 158 TIESCYTSQFEQHMRAVVGLPLGDPS--------------------------------MKTPAAIMYNLLGEAEGERGFY 205 (437)
Q Consensus 158 ~~~~~~~~~~~~~~~~a~G~~l~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~ 205 (437)
+...+|+|+++.+++.++|.+++..+ ...+.++..+++++. +...|.
T Consensus 379 ~~~~~G~dl~~~~~~~a~G~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~-~~~~~~ 457 (554)
T 1w96_A 379 TEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSED-PNDGFK 457 (554)
T ss_dssp HHHHHCCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCTTCCSHHHHHHCCCCCCCSEEEEEEEEEEC-CCCSSC
T ss_pred hhhhcCCCHHHHHHHHHcCCCcccccchhhhccCCccccccccccccccccccccccCCCCeEEEEEEEEccC-CCCCcc
Confidence 33478999999999999999875320 112233445666542 222343
Q ss_pred ccccchhhh--hccCCceEEE--eccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccC
Q 013729 206 LAHQLIGKA--LSIPGATVHW--YDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSD 279 (437)
Q Consensus 206 p~~~~~~~~--~~~pg~~~~~--~~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~ 279 (437)
|..+.+..+ ...|++.++. ..+..+.+ ++++|+|+++|+|.+||+++++++++++++. +. -.
T Consensus 458 p~~G~i~~~~~~~~~~v~~~~~~~~g~~i~~~~~~~~~~vi~~g~~~~eA~~~~~~al~~i~i~------g~------~~ 525 (554)
T 1w96_A 458 PSGGTLHELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIR------GD------FR 525 (554)
T ss_dssp CCSSSEEEECCSSCSSEEEEEEECCSCSSCSSCSEEEEEEEEEESSHHHHHHHHHHHHHHHTTC------C---------
T ss_pred cCCeEEeEEecCCCCCEEEeeecccCCccCCCCCCceEEEEEEeCCHHHHHHHHHHHHhccEEE------ee------cc
Confidence 211112221 1224543332 21222222 5699999999999999999999999988742 11 25
Q ss_pred CCHHHHHHHHHHHHHcC
Q 013729 280 SDLPVMKDAAKILTMFS 296 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G 296 (437)
+|.+.+..+...-....
T Consensus 526 ~~i~~~~~~~~~~~f~~ 542 (554)
T 1w96_A 526 TTVEYLIKLLETEDFED 542 (554)
T ss_dssp -CCHHHHHHHTSHHHHT
T ss_pred CCHHHHHHHhcCHhhhc
Confidence 67788877765544433
No 36
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.96 E-value=1.3e-28 Score=251.47 Aligned_cols=251 Identities=16% Similarity=0.099 Sum_probs=182.7
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc-----------CCCCcEEEeeccCCCeEEEE
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG-----------GFDRGLYVEKWAPFVKELAV 71 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~-----------~~~~~~lvEe~I~g~~E~sv 71 (437)
+++.+|+.+ .++|||+||||..++ ||+||++|+|.+|+.++++.+. .....+++|+||+| .|+++
T Consensus 133 ~~~~~~~~~--~~~g~P~vvKp~~g~-gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~e~sv 208 (425)
T 3vot_A 133 FHTLADLEN--RKLSYPLVVKPVNGF-SSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDG-PEFAI 208 (425)
T ss_dssp ESSGGGGTT--CCCCSSEEEEESCC------CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCS-CEEEE
T ss_pred cCcHHHHHH--hhcCCcEEEEECCCC-CCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecC-cEEEE
Confidence 455666543 578999999998765 9999999999999999987652 12345999999997 89999
Q ss_pred EEEEcCCCceEEeeeeeeEEecC---ceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCc-eEEEEEEEEeCCCcEEEEEE
Q 013729 72 IVVRGRDKSILCYPVVETIHKEN---ICHIVKAPAAVPWKISELATDVAHKAVSSLEGA-GIFAVELFWTNNGQILLNEV 147 (437)
Q Consensus 72 ~~~~d~~G~~~~~~~~e~~~~~g---~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~-G~~~ve~~~~~dg~~~viEi 147 (437)
+++.+ +|++..+++.+.....+ .....+.|+.++++..+++.+++.+++++||+. |++|+||++++||++||+|+
T Consensus 209 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~Pa~l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~dG~~~~iEi 287 (425)
T 3vot_A 209 ETLSI-QGNVHVLSIGYKGNSKGPFFEEGVYIAPAQLKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDKDGTPYVIEV 287 (425)
T ss_dssp EEEEE-TTEEEEEEEEEEECCCCSBCCCCEEEESCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECTTCCEEEEEE
T ss_pred EEEEe-CCcEEEEeEEEEeccCCCccccceEeecccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEeCCcEEEEEE
Confidence 99875 67877777665443322 224557899999999999999999999999996 99999999999999999999
Q ss_pred cCCCCCCCCc---eeeeccccHHHHHHHHHhCCCCCCCCC---CCCcEEEEEeeccCc-cC-CCccccccchhhhhccCC
Q 013729 148 APRPHNSGHH---TIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAE-GE-RGFYLAHQLIGKALSIPG 219 (437)
Q Consensus 148 NpR~~~sg~~---~~~~~~~~~~~~~~~~a~G~~l~~~~~---~~~~~~~~~~~~~~~-~~-~~~~p~~~~~~~~~~~pg 219 (437)
|||+|+++.. +..++|+|+++.+++.++|.+...... .....+...++.... +. ..+. +++++...|+
T Consensus 288 N~R~gG~~~~~~l~~~~~G~d~~~~~i~~alg~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~----g~~~~~~~p~ 363 (425)
T 3vot_A 288 GARIGGSGVSHYIVKESTGINFMQLVLQNALKPLESSEFEGEIRPVRTAGNYIIPVQGSGTFEKID----GLEEVKQRQE 363 (425)
T ss_dssp ESSCGGGGHHHHHHHHHHCCCHHHHHHHHHHSCCCGGGSCSCCCCSSEEEEEECCCCSCEEEEEEE----THHHHHTCTT
T ss_pred ecCCCCCCchHHHHHHHHCCCHHHHHHHHHCCCccccccccccccceEEEEEEEcCCCCeEEEecC----CHHHHhcCCC
Confidence 9999875432 234678999999999999965443211 112233333333221 11 1233 6667777888
Q ss_pred c-eEEEeccc--ccc----CCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 220 A-TVHWYDKP--EMR----QQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 220 ~-~~~~~~~~--~~~----~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
+ ++.++.++ .+. .++++|+|++.|+|.+||.++++++.+.+++
T Consensus 364 v~~~~~~~~~G~~v~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~i 413 (425)
T 3vot_A 364 VKRVFQFMRRGAKILPYPHFSGYPGFILTSHHSYEECEAFYRELDDELHI 413 (425)
T ss_dssp EEEEEECCCTTCEECCTTCCCCCSEEEEEEESSHHHHHHHHHHHHHHCEE
T ss_pred eEEEEEEecCCCEeCCCCCCCCeEEEEEEEECCHHHHHHHHHHHhCccEE
Confidence 6 56554432 222 2678999999999999999999999998764
No 37
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.96 E-value=9.5e-29 Score=277.66 Aligned_cols=285 Identities=17% Similarity=0.222 Sum_probs=213.6
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+.+.+++.++++++|||+||||..++ ||+||++|+|++|+.++++.+... ++.+++|+||+|.+|++++++.
T Consensus 140 ~v~s~eea~~~a~~iGyPvVVKP~~Gg-Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~vl~ 218 (1150)
T 3hbl_A 140 PIKSYELAKEFAEEAGFPLMIKATSGG-GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIG 218 (1150)
T ss_dssp CBCSSSTTTTTGGGTCSSEEEECCC--------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEEEEE
Confidence 356788899999999999999998876 999999999999999999876422 2459999999988999999999
Q ss_pred cCCCceEEe-eeeeeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 76 GRDKSILCY-PVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 76 d~~G~~~~~-~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
|.+|+++.+ ...+.+++.+.......|+. ++++..+++.+.+.++++++||+|++++||+++++ ++||+|||||+++
T Consensus 219 d~~G~vv~l~er~~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd~d-~~y~iEINpR~~g 297 (1150)
T 3hbl_A 219 DEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD-EFFFIEVNPRVQV 297 (1150)
T ss_dssp CSSSCEEEEEEEEEEEESSSCEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETT-EEEEEEEECSCCT
T ss_pred eCCCCEEEEEeeccceeccCceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-eEEEEEEeCCCCC
Confidence 988887654 33456666677677788984 99999999999999999999999999999999976 7999999999998
Q ss_pred CCCceeeeccccHHHHHHHHHhCCCCCCC------CC---CCCcEEEEEeeccCccCCCccccccchhhhhccC---Cce
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDP------SM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP---GAT 221 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~~l~~~------~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p---g~~ 221 (437)
+.+++...+|+|+++++++.++|.+++.. +. ..++++.++++++ +|...|.|..+.+.. ...| |+.
T Consensus 298 ~~~vte~~tGvDlv~~~i~ia~G~~L~~~~~~~~~q~~i~~~G~ai~~Ri~ae-dp~~~f~P~~G~i~~-~~~p~~~gvr 375 (1150)
T 3hbl_A 298 EHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTE-DPLNDFMPDTGTIIA-YRSSGGFGVR 375 (1150)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEECSE-EGGGTSEECCCCCCE-EECCCCTTEE
T ss_pred CcceeehhcCCCHHHHHHHHHCCCCCCccccccccccccccceEEEEEEEecc-CCccccCCCCceEEE-EEcCCCCcee
Confidence 65555567899999999999999999852 11 1345777888876 344456653322222 2333 333
Q ss_pred EE---EeccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcC
Q 013729 222 VH---WYDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFS 296 (437)
Q Consensus 222 ~~---~~~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G 296 (437)
+. .+.+..+.+ ++.+|+|+++|+|++||++++.+++++++ |.|-.++.+.+..+...-....
T Consensus 376 ~d~~~~~~G~~v~~~yds~lakvi~~g~~~~eA~~~~~~al~~~~-------------i~G~~tn~~~~~~~~~~~~f~~ 442 (1150)
T 3hbl_A 376 LDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMR-------------IRGVKTNIPFLINVMKNKKFTS 442 (1150)
T ss_dssp EEESSCSSSCCCCTTSCCCSEEEEEEESSHHHHHHHHHHHHHHCE-------------EESSCCSHHHHHHHHHCHHHHH
T ss_pred ccccccccCCEeCCcCCCceeEEEEEeCCHHHHHHHHHHHHhceE-------------EeCccCCHHHHHHHhCCHHHcC
Confidence 32 122333333 45689999999999999999999999865 4677889999999876655444
Q ss_pred CcEEEEE
Q 013729 297 VPHEVRI 303 (437)
Q Consensus 297 ~~~~~~v 303 (437)
..+++++
T Consensus 443 ~~~~t~~ 449 (1150)
T 3hbl_A 443 GDYTTKF 449 (1150)
T ss_dssp SCCCTTH
T ss_pred CCcccch
Confidence 4444443
No 38
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.96 E-value=1.9e-28 Score=275.86 Aligned_cols=346 Identities=17% Similarity=0.206 Sum_probs=190.4
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
+.+.+++.++++++|||+||||..++ ||+||++|+|++|+.++++.+.. .+..++|||||+|++|++++++.|
T Consensus 166 v~s~eea~~~a~~iGyPvVVKP~~Gg-GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~vl~D 244 (1236)
T 3va7_A 166 IKDAKEAKEVAKKLEYPVMVKSTAGG-GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGD 244 (1236)
T ss_dssp --------------------------------------------------------------------CCEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEEEEec
Confidence 56888999999999999999998776 99999999999999999887532 134599999999889999999999
Q ss_pred CCCceEEeeee-eeEEecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCC-CcEEEEEEcCCCCC
Q 013729 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHN 153 (437)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~d-g~~~viEiNpR~~~ 153 (437)
++|.++.++.. +.+++.+.......|+. ++++..+++.+.+.++++++||+|++++||+++++ |++||+|||||+++
T Consensus 245 g~g~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g~~y~iEINpRl~g 324 (1236)
T 3va7_A 245 GFGKAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQV 324 (1236)
T ss_dssp SSSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred CCceEEEEeeeeeeeeecCcceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCcEEEEEEECCCCC
Confidence 88887776554 44555555566678886 99999999999999999999999999999999975 78999999999998
Q ss_pred CCCceeeeccccHHHHHHHHHhCCCCCCCC--C-CCCcEEEEEeeccCccCCCccccccchhhhhccCC-ceEE--Eecc
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPS--M-KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPG-ATVH--WYDK 227 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg-~~~~--~~~~ 227 (437)
+.+++...+++|+++++++.++|.+++... . ..++++.++++++. +...|.|....+.. ...|+ +.+. .+.+
T Consensus 325 ~~~~te~vtGvDlv~~~l~~a~G~~l~~~~~~~~~~g~Ai~~riyaed-p~~~f~p~~G~i~~-~~~p~gvrvd~~v~~G 402 (1236)
T 3va7_A 325 EHPITEMVTGLDLVEWMLRIAANDSPDFDNTKIEVSGASIEARLYAEN-PVKDFRPSPGQLTS-VSFPSWARVDTWVKKG 402 (1236)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCCCGGGCCCCCCSEEEEEEEESEE-TTTTTEECCEECCE-EECCTTSEEEECCCTT
T ss_pred ccHHHHHHHCCCHHHHHHHHHCCCCCCCccccccccceEEEEEEecCC-cccccCCCCceEEE-EEcCCccEecccccCC
Confidence 555555568999999999999999887432 1 23456667777753 33345542222222 23343 3332 2233
Q ss_pred ccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec
Q 013729 228 PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS 305 (437)
Q Consensus 228 ~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s 305 (437)
..+.+ ++++|+|+++|+|++||++++++++++++ |.|-.++.+.+..+...-......++++
T Consensus 403 ~~V~~~yds~la~vi~~g~~r~eA~~~~~~al~~~~-------------i~G~~tn~~~~~~~~~~~~f~~~~~~t~--- 466 (1236)
T 3va7_A 403 TNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETA-------------VYGCITNIDYLRSIASSKMFKEAKVATK--- 466 (1236)
T ss_dssp CEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCE-------------EESSCCSHHHHHHHHHCHHHHHTCCCTT---
T ss_pred CEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhCEE-------------EeCcccCHHHHHHHhCCHHHhCCCCcch---
Confidence 33433 56899999999999999999999998765 4667889999999876655544344333
Q ss_pred CCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCCCCCCCChhhHH--HhhhCCCCCceE
Q 013729 306 AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLL--SIVQMPRGVPVA 379 (437)
Q Consensus 306 ~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~--~~~~~~~gvp~~ 379 (437)
|+++....--.+.|..+|.-..+-+. -|+.-.-=+|+|.++ .+|-..--+ +-+.-|.+-++.
T Consensus 467 ----------~~~~~~~~~~~i~v~~~G~~ttvQD~-pGR~G~~~~Gv~~sG-amD~~a~~~aN~LvgN~~~~a~l 530 (1236)
T 3va7_A 467 ----------VLDSFDYKPCAFEVLAPGANTSVQDY-PGRTGYWRIGVPPSG-PMDSYSFRLANRVVGNNSKSPAL 530 (1236)
T ss_dssp ----------GGGGCCCCCSEEEEEECCSSCEEECS-SCSCSCTTTTCCCCS-CSSHHHHHHHHHHTTCCTTCCEE
T ss_pred ----------hhhhcCcCCCeeEEEcCCccchhhhc-cCCccccccCCCCCC-chhHHHHHHHHHHhCCCCCCcEE
Confidence 23221111112334344433322222 133444556778754 355443111 223336666665
No 39
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.96 E-value=1e-28 Score=278.06 Aligned_cols=288 Identities=17% Similarity=0.205 Sum_probs=172.4
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+.+.+++.++++++|||+||||..++ ||+||++|+|++|+.++++.+... ...++||+||++++|++++++.
T Consensus 156 ~v~s~eea~~~a~~igyPvVVKp~~g~-GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl~ 234 (1165)
T 2qf7_A 156 LPDDMAEVAKMAAAIGYPVMLKASWGG-GGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILG 234 (1165)
T ss_dssp -----------------------------------------------------------------CCCSSEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEEEEEE
Confidence 356889999999999999999998876 999999999999999988765321 2459999999977999999999
Q ss_pred cCCCceEE-eeeeeeEEecCceEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEe-CCCcEEEEEEcCCCC
Q 013729 76 GRDKSILC-YPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWT-NNGQILLNEVAPRPH 152 (437)
Q Consensus 76 d~~G~~~~-~~~~e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~-~dg~~~viEiNpR~~ 152 (437)
|.+|+++. ++..+..++.+.....+.|+ .++++..+++.+++.++++++||+|++++||+++ ++|++||+|||||++
T Consensus 235 D~~G~vv~l~~r~~s~~r~~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg~~~~iEiNpR~~ 314 (1165)
T 2qf7_A 235 DTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQ 314 (1165)
T ss_dssp CTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCC
T ss_pred cCCCcEEEEEeecccceecccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEECCCCCEEEEEEEcCCC
Confidence 98887764 44445666666666777888 4999999999999999999999999999999999 788999999999999
Q ss_pred CCCCceeeeccccHHHHHHHHHhCCCCCCCC---------CCCCcEEEEEeeccCccCCCccccccchhhhhcc---CCc
Q 013729 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPS---------MKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSI---PGA 220 (437)
Q Consensus 153 ~sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---pg~ 220 (437)
++.+++...+|+|+++.+++.++|.+++... ...++++.++++++. |...|.|....+.. ... +++
T Consensus 315 ~~~~vte~~tGiDl~~~~i~~a~G~~l~~~~~g~p~q~~~~~~g~Ai~~ri~ae~-P~~~f~p~~G~I~~-~~~~~~~gv 392 (1165)
T 2qf7_A 315 VEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTED-PEHNFIPDYGRITA-YRSASGFGI 392 (1165)
T ss_dssp TTHHHHHHHHCCCHHHHHHHHHTTCCTTSGGGTCCCGGGCCCCSEEEEEEEESEE-TTTTTEECCEECCE-EECCCCTTE
T ss_pred CCchhhhhhhCCCHHHHHHHHHcCCCccccccccccccccccCcEEEEEEEEecC-CccCcCCCCcEEEE-EecCCCCce
Confidence 8766666678999999999999999987531 112345556776653 54446553322322 122 233
Q ss_pred eEEE---eccccccC--CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHc
Q 013729 221 TVHW---YDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMF 295 (437)
Q Consensus 221 ~~~~---~~~~~~~~--~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~ 295 (437)
.+.. +.+..+.+ ++.+|+|+++|+|+++|++++.++++++++ .|-.+|.+.+..+...-...
T Consensus 393 rvd~g~~~~G~~v~~~~d~~l~~vi~~g~t~~eA~~~~~~al~~i~i-------------~G~~tni~~~~~~~~~~~f~ 459 (1165)
T 2qf7_A 393 RLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALREFRI-------------RGVATNLTFLEAIIGHPKFR 459 (1165)
T ss_dssp EEECCSCCTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHHCEE-------------ESSCCSHHHHHHHHTSHHHH
T ss_pred EeeeccCCCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhcEEE-------------ecccCCHHHHHHHhcCHHhh
Confidence 3221 12223333 678999999999999999999999998763 45578999999988766666
Q ss_pred CCcEEEEEec
Q 013729 296 SVPHEVRIVS 305 (437)
Q Consensus 296 G~~~~~~v~s 305 (437)
...++++++.
T Consensus 460 ~~~~~t~~~~ 469 (1165)
T 2qf7_A 460 DNSYTTRFID 469 (1165)
T ss_dssp TTCCCTTTTT
T ss_pred cCCccchhhh
Confidence 6666666543
No 40
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.96 E-value=1.4e-27 Score=241.97 Aligned_cols=250 Identities=14% Similarity=0.121 Sum_probs=178.1
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~d~~G 79 (437)
.+.+.+|+.++++++|||+||||..++ ||+||++|+|.+|+.++++.+.. ..+.+++||||+| .|++++++.. +|
T Consensus 129 ~~~~~~~~~~~~~~~g~P~vvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~e~sv~~~~~-~g 205 (403)
T 4dim_A 129 VVRNENELKNALENLKLPVIVKATDLQ-GSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEG-YEFGAQAFVY-KN 205 (403)
T ss_dssp CCCSHHHHHHHHHTSCSSEEEECSCC------CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCS-EEEEEEEEEE-TT
T ss_pred EeCCHHHHHHHHhcCCCCEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCC-cEEEEEEEEE-CC
Confidence 367899999999999999999998765 99999999999999999987632 2245999999997 9999999864 67
Q ss_pred ceEEeeeeeeEEecC---ceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCce-EEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 80 SILCYPVVETIHKEN---ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAG-IFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 80 ~~~~~~~~e~~~~~g---~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G-~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
++..+...++....+ .......|+.++++..+++.+++.+++++||++| ++|+||+++ +|.+||+|||||+++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~-~~~~~~iEiN~R~~~~~ 284 (403)
T 4dim_A 206 DVLFVMPHGDETYMSHTAVPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILK-DNEVYIIELTGRVGANC 284 (403)
T ss_dssp EEEEEEEEEEEEEESSSEEEEEEEESCCSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEE-TTEEEEEEEESSCCSTT
T ss_pred EEEEEEEecceeccCCCCcceeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEE-CCcEEEEEEcCCCCCCc
Confidence 877666554432222 2335567889999999999999999999999996 999999998 67899999999999865
Q ss_pred Cc--eeeeccccHHHHHHHHHhCCCCCC-CCC--CCCcEEEEEee--ccCccC-CCccccccchhhhhccCCc-eEEEec
Q 013729 156 HH--TIESCYTSQFEQHMRAVVGLPLGD-PSM--KTPAAIMYNLL--GEAEGE-RGFYLAHQLIGKALSIPGA-TVHWYD 226 (437)
Q Consensus 156 ~~--~~~~~~~~~~~~~~~~a~G~~l~~-~~~--~~~~~~~~~~~--~~~~~~-~~~~p~~~~~~~~~~~pg~-~~~~~~ 226 (437)
.+ +...+|+|+++++++.++|.+++. ... ....+...+++ ....+. ..+. .... ..+++ ++.++.
T Consensus 285 ~~~~~~~~~G~d~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~----~~~~--~~~~v~~~~~~~ 358 (403)
T 4dim_A 285 LPELVEINYGIEYYKMIASMAISENPLVFWSQKSKENKAGLARMIIETEKSGILKEIL----NSNA--KDDDIVEITFFK 358 (403)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTCCTHHHHTTCCSSCCEEEEEEECCSSCCEEEEEEE----ECCC--CCTTEEEEEECC
T ss_pred HHHHHHHHhCcCHHHHHHHHHcCCCccccccccccccccceEEEEEecCCCeEEEeee----cccc--cCCCeEEEEEEc
Confidence 33 345778999999999999999832 111 11223223332 211111 1111 1111 12332 122222
Q ss_pred --cccccC----CceeEEEEEEcCCHHHHHHHHHHhhccCC
Q 013729 227 --KPEMRQ----QRKMGHITIVGSSMGLVESRLNSLLKEDS 261 (437)
Q Consensus 227 --~~~~~~----~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~ 261 (437)
+..+.+ ++++|+|+++|+|.++|++++.+++++++
T Consensus 359 ~~G~~v~~~~d~~~~~g~vi~~~~~~~~a~~~~~~~~~~~~ 399 (403)
T 4dim_A 359 EENDEIKKFENSNDCIGQIIVKEETLDKCKDKLDVIINNIN 399 (403)
T ss_dssp CTTCEECCSCSGGGCCEEEEEEESSHHHHHHHHHHHHTTEE
T ss_pred CCCCEeCCCCCCCceeEEEEEEeCCHHHHHHHHHHHhccEE
Confidence 222222 45899999999999999999999998765
No 41
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.96 E-value=9.5e-27 Score=237.61 Aligned_cols=251 Identities=14% Similarity=0.141 Sum_probs=181.8
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+++.+++.++++++|||+||||..++ +|+||++++|.+|+.++++.+... ...++|||||+| .|+++.++.
T Consensus 122 ~~~~~~~~~~~~~~~~~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~sv~~~~ 199 (424)
T 2yw2_A 122 VFTDFEKAKEYVEKVGAPIVVKADGLA-AGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEG-EEASYIVMI 199 (424)
T ss_dssp EESCHHHHHHHHHHHCSSEEEEESSCC-TTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHHcCCcEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-cEEEEEEEE
Confidence 357899999999999999999997765 999999999999999999876431 145999999996 999999998
Q ss_pred cCCCc-eEEeeeeeeEEe--cC------ceEEEEeCCC-CCHHHHHHH-HHHHHHHHHHc-----CCceEEEEEEEEeCC
Q 013729 76 GRDKS-ILCYPVVETIHK--EN------ICHIVKAPAA-VPWKISELA-TDVAHKAVSSL-----EGAGIFAVELFWTNN 139 (437)
Q Consensus 76 d~~G~-~~~~~~~e~~~~--~g------~~~~~~~P~~-l~~~~~~~i-~~~a~~i~~al-----g~~G~~~ve~~~~~d 139 (437)
| |+ ++.++...+... .+ .....+.|++ +++++.+++ ++++.+++++| +++|++++||+++++
T Consensus 200 ~--G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~ 277 (424)
T 2yw2_A 200 N--GDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITKE 277 (424)
T ss_dssp E--TTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEETT
T ss_pred c--CCEEEeecceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCC
Confidence 5 44 333333221111 11 1134567887 999999988 47888888775 788999999999988
Q ss_pred CcEEEEEEcCCCCCCCCceee-eccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccC---C--Cccccccchhh
Q 013729 140 GQILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE---R--GFYLAHQLIGK 213 (437)
Q Consensus 140 g~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~---~--~~~p~~~~~~~ 213 (437)
| +||+|||||+++++++++. .+++|+.+.+++.+.|. +++.......++...+.....+. . .+. +++.
T Consensus 278 g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~~~~a~~~~~~~~g~~~~~~~g~~i~----~~~~ 351 (424)
T 2yw2_A 278 G-PKVLEFNVRLGDPEAQPILMRVKNDFLETLLNFYEGK-DVHIKEDERYALDVVLASRGYPEKPETGKIIH----GLDY 351 (424)
T ss_dssp E-EEEEEEESSCCTTTHHHHHHTBCSCHHHHHHHHHTTC-CCCCCBCSSEEEEEEEECTTTTSSCCCCCBCB----CHHH
T ss_pred C-cEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcccccCCcEEEEEEecCCCCCCCCCCCcCc----Cccc
Confidence 8 9999999999987765443 56799999888887775 66543222233333333221111 0 112 3434
Q ss_pred hhccCCceEEEeccc-----cccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 214 ALSIPGATVHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 214 ~~~~pg~~~~~~~~~-----~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
....|+++++.++.. ....++++|+|+++|+|.++|+++++++++++++
T Consensus 352 ~~~~~~~~~~~~g~~~~~~~~~~~~~r~~~v~~~g~~~~~a~~~~~~~~~~i~~ 405 (424)
T 2yw2_A 352 LKSMEDVVVFHAGTKKEGNFTVTSGGRVLNVCAYGKTLKEAKERAYEAIRYVCF 405 (424)
T ss_dssp HHTSTTEEEEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBC
T ss_pred ccCCCCeEEEEcceEeeCCEEEecCCcEEEEEEEeCCHHHHHHHHHHHHhccee
Confidence 344678776555532 2334789999999999999999999999998775
No 42
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=7.7e-27 Score=237.84 Aligned_cols=254 Identities=15% Similarity=0.096 Sum_probs=181.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~d~~G 79 (437)
.+++.+++.++++++|||+||||..++ +|+||++++|.+|+.++++.+.. ....++|||||+| .|+++.+++| |
T Consensus 121 ~~~~~~~~~~~~~~~~~P~vvKp~~~~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~E~sv~~~~~--G 196 (417)
T 2ip4_A 121 VFREPLEALAYLEEVGVPVVVKDSGLA-AGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLEG-EEATVLALTD--G 196 (417)
T ss_dssp EESSHHHHHHHHHHHCSSEEEECTTSC-SSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCCS-CEEEEEEEES--S
T ss_pred eeCCHHHHHHHHHHcCCCEEEEECCCC-CCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECccC-cEEEEEEEEe--C
Confidence 357899999999999999999998766 89999999999999999987642 1245999999996 8999999984 4
Q ss_pred c-eEEeeeeeeEEec--Cc------eEEEEeCCCCCHHHHHHH-HHHHHHHHHHc-----CCceEEEEEEEEeCCCcEEE
Q 013729 80 S-ILCYPVVETIHKE--NI------CHIVKAPAAVPWKISELA-TDVAHKAVSSL-----EGAGIFAVELFWTNNGQILL 144 (437)
Q Consensus 80 ~-~~~~~~~e~~~~~--g~------~~~~~~P~~l~~~~~~~i-~~~a~~i~~al-----g~~G~~~ve~~~~~dg~~~v 144 (437)
+ ++.++..+..... ++ ....+.|+.++++..+++ ++++.+++++| +|+|++++||+++++| +||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~v 275 (417)
T 2ip4_A 197 ETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTREG-PKV 275 (417)
T ss_dssp SCEEECCCBEECCEEETTTEEEECSCSEEEESCCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECSSC-EEE
T ss_pred CEEEEcchheechhhccCCCCCcCCCCeeeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeCCC-eEE
Confidence 4 4444443322111 11 134567888999998888 77788888875 7889999999999888 999
Q ss_pred EEEcCCCCCCCCceee-eccccHHHHHHHHHhCCCCCCCCCC-CCcEEEEEeeccCccCCCccccccchhhhhccCCceE
Q 013729 145 NEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMK-TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATV 222 (437)
Q Consensus 145 iEiNpR~~~sg~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~pg~~~ 222 (437)
+|||||+++++++++. .+++|+.+.+++.+.|. ++..... ....++..++...++.....+.. .+..+...|++.+
T Consensus 276 iEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~-~i~~~~~~~~v~~ 353 (417)
T 2ip4_A 276 LEFNARFGDPEAQALLPLLENDLVELALRVAEGR-LAGTRLSWKEGAAACVVLAAPGYPESPRKGI-PLHVPEPPEGVLV 353 (417)
T ss_dssp EEEESSCCTTHHHHHTTTBCSCHHHHHHHHHHTC-GGGCCCCBCSSEEEEEEEECTTTTTSCCCCC-BCBCCCCCTTEEE
T ss_pred EEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcCCccccCCcEEEEEEeCCCCCCCCCCCC-cccccCCCCCeEE
Confidence 9999999987665433 56799999999888875 5443222 11244445554332211111000 0111111267766
Q ss_pred EEecccc-----ccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 223 HWYDKPE-----MRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 223 ~~~~~~~-----~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
+++|... ...+.|+|+|++.|+|.++|+++++++++++++
T Consensus 354 ~~~g~~~~~~~~~~~~~rv~~v~~~g~~~~~a~~~~~~~~~~i~~ 398 (417)
T 2ip4_A 354 FHAGTRREGGRLVSAGGRVLNVVGLGRDLKEALERAYAYIPQVGF 398 (417)
T ss_dssp EESSEEESSSSEEECSSEEEEEEEEESSHHHHHHHHHHHGGGSBC
T ss_pred EECceEeeCCeEEecCCcEEEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 6665411 122567999999999999999999999998875
No 43
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.95 E-value=2.4e-26 Score=235.99 Aligned_cols=256 Identities=14% Similarity=0.126 Sum_probs=185.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+++.+++.++++++|||+||||..++ ||+||++++|.+|+.++++.+... ...++|||||+| .|+++.++.
T Consensus 143 ~~~~~~ea~~~~~~~g~PvVvKp~~~~-gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~sv~~~~ 220 (442)
T 3lp8_A 143 YFVDTNSAYKFIDKHKLPLVVKADGLA-QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEG-KEISFFTLV 220 (442)
T ss_dssp EESSHHHHHHHHHHSCSSEEEEESSCC-TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHHcCCcEEEeECCCC-CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeecC-cEEEEEEEE
Confidence 367899999999999999999997665 999999999999999999876421 145999999996 999999998
Q ss_pred cCCCceEEeeeeeeEEec--Cc------eEEEEeCCC-CCHHHHHHHHHH----HHHHHHHcCC--ceEEEEEEEEeCCC
Q 013729 76 GRDKSILCYPVVETIHKE--NI------CHIVKAPAA-VPWKISELATDV----AHKAVSSLEG--AGIFAVELFWTNNG 140 (437)
Q Consensus 76 d~~G~~~~~~~~e~~~~~--g~------~~~~~~P~~-l~~~~~~~i~~~----a~~i~~alg~--~G~~~ve~~~~~dg 140 (437)
|++ .++.++..+...+. ++ .+..+.|++ ++++..+++.+. +.++++++|+ +|++++||+++++|
T Consensus 221 dg~-~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~~g 299 (442)
T 3lp8_A 221 DGS-NPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKNE 299 (442)
T ss_dssp ESS-CEEEEEEEEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE
T ss_pred CCC-eEEEeEEeEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC
Confidence 654 45545544332221 11 135577887 999999999987 8888888887 79999999999887
Q ss_pred cEEEEEEcCCCCCCCCceee-eccccHHHHHHHHHhCCCCCCCCCCC-CcEEEEEeeccCccCCCccc--cccchhhhhc
Q 013729 141 QILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKT-PAAIMYNLLGEAEGERGFYL--AHQLIGKALS 216 (437)
Q Consensus 141 ~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~ 216 (437)
+||+|+|||+|++.+..+. .++.|+++.+++.+.|.. +...... ..+++..+++..+....... ...+++++..
T Consensus 300 -~~viEiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~G~l-~~~~~~~~~~~a~~vv~a~~gyp~~~~~g~~i~g~~~~~~ 377 (442)
T 3lp8_A 300 -PKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGKL-GNESVELSKKAALCVVVASRGYPGEYKKNSIINGIENIEK 377 (442)
T ss_dssp -EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHHTCC-SSCCCCBCSCEEEEEEEEETTTTSSCCSSCEEBSHHHHHT
T ss_pred -eEEEEEecCCCCCchhhhHHHhCCCHHHHHHHHHcCCC-CCCCceeccCcEEEEEEccCCCCCCCCCCCEeeCCccccc
Confidence 9999999999987666544 457899999999999963 3322222 22333444443322111110 0114555455
Q ss_pred cCCceEEEecc-----ccccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 217 IPGATVHWYDK-----PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 217 ~pg~~~~~~~~-----~~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
.|++.+...+. .....++|++.|++.|+|.+||.++++++++.|++
T Consensus 378 ~~~~~~~~ag~~~~~~~~~~~ggRv~~v~~~g~~~~~A~~~a~~~~~~i~~ 428 (442)
T 3lp8_A 378 LPNVQLLHAGTRREGNNWVSDSGRVINVVAQGENLASAKHQAYAALDLLDW 428 (442)
T ss_dssp CSSEEEEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBC
T ss_pred CCCcEEEEeeeeccCCeEEecCCeEEEEEEecCCHHHHHHHHHHHhcccCC
Confidence 57765443221 12234799999999999999999999999998875
No 44
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=237.90 Aligned_cols=253 Identities=17% Similarity=0.128 Sum_probs=180.3
Q ss_pred ccCCHHHHHHHHHhhCCc-EEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYP-LMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVV 74 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyP-vvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~ 74 (437)
.+++.+++.++++++||| +||||..++ ||+||++|+|.+|+.++++.+... ...++|||||+| .|+++.++
T Consensus 148 ~~~~~~~~~~~~~~~g~P~vvvKp~~~~-gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~ 225 (452)
T 2qk4_A 148 AFTKPEEACSFILSADFPALVVKASGLA-AGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDG-EEVSCLCF 225 (452)
T ss_dssp EESSHHHHHHHHHHCSSCEEEEEESBC----CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCCS-EEEEEEEE
T ss_pred EECCHHHHHHHHHhCCCCeEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CeEEEEEE
Confidence 357889999999999999 999997766 899999999999999999876431 245999999996 99999999
Q ss_pred EcCCCc-eEEeeeeeeEEec--Cc------eEEEEeCCC-CCHHHHHHHH-HHHHHHHHHc-----CCceEEEEEEEEeC
Q 013729 75 RGRDKS-ILCYPVVETIHKE--NI------CHIVKAPAA-VPWKISELAT-DVAHKAVSSL-----EGAGIFAVELFWTN 138 (437)
Q Consensus 75 ~d~~G~-~~~~~~~e~~~~~--g~------~~~~~~P~~-l~~~~~~~i~-~~a~~i~~al-----g~~G~~~ve~~~~~ 138 (437)
+ +|+ +..++..++.... ++ ....+.|++ +++++.+++. +++.+++++| +|+|++++||++++
T Consensus 226 ~--dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~ 303 (452)
T 2qk4_A 226 T--DGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK 303 (452)
T ss_dssp E--CSSCEEECCCBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET
T ss_pred E--CCCEEEEcceeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC
Confidence 7 455 5555554432221 11 133567987 9999998886 6888888765 67899999999998
Q ss_pred CCcEEEEEEcCCCCCCCCceee-eccccHHHHHHHHHhCCCCCCCCCC--CCc-EEEEEeeccCccCCCccc--cccchh
Q 013729 139 NGQILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMK--TPA-AIMYNLLGEAEGERGFYL--AHQLIG 212 (437)
Q Consensus 139 dg~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~~--~~~-~~~~~~~~~~~~~~~~~p--~~~~~~ 212 (437)
+| +||+|||||+++++++++. .+++|+.+.+++.+.|. ++..... ... ++...+... ++.....+ ...+++
T Consensus 304 ~g-~~viEiN~R~~~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~~~~~~~a~~~~l~~~-g~~~~~~~g~~i~~l~ 380 (452)
T 2qk4_A 304 NG-PKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLDGL-LCTSLPVWLENHTALTVVMASK-GYPGDYTKGVEITGFP 380 (452)
T ss_dssp TE-EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTC-GGGGCCCBCTTCEEEEEEEECT-TTTSSCCCSCBCBCHH
T ss_pred CC-cEEEEEeccCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcccceecCCCcEEEEEEECC-CCCCCCCCCCcccCcc
Confidence 88 9999999999988765433 45799999888777664 5543322 122 333333332 21111110 001333
Q ss_pred hhhccCCceEEEeccc-----cccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 213 KALSIPGATVHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 213 ~~~~~pg~~~~~~~~~-----~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
.. ..|+++++++|.. ....++|+|+|++.|+|.++|+++++++++++++
T Consensus 381 ~~-~~~~v~~~~~G~~~~~~~~~~~~~rv~~v~~~g~~~~~a~~~~~~~~~~i~~ 434 (452)
T 2qk4_A 381 EA-QALGLEVFHAGTALKNGKVVTHGGRVLAVTAIRENLISALEEAKKGLAAIKF 434 (452)
T ss_dssp HH-HHTTCEEEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHHHCBC
T ss_pred cc-CCCCcEEEECcEEeeCCeEEecCCeEEEEEEecCCHHHHHHHHHHHHhhccc
Confidence 32 4578887776542 2344789999999999999999999999998874
No 45
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.95 E-value=2.8e-26 Score=236.16 Aligned_cols=250 Identities=17% Similarity=0.162 Sum_probs=178.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+++.+|+.+++++++||+||||..++ +|+||++++|.+|+.++++.+.. ....++|||||+| .|+++.+++
T Consensus 143 ~~~~~~~~~~~~~~~~~PvVvKp~~~~-gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~ 220 (451)
T 2yrx_A 143 AFTSYEEAKAYIEQKGAPIVIKADGLA-AGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEG-EEFSFMAFV 220 (451)
T ss_dssp EESCHHHHHHHHHHHCSSEEEEECC-----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHhcCCcEEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCcC-cEEEEEEEE
Confidence 357899999999999999999998766 89999999999999999876521 1245999999996 999999998
Q ss_pred cCCCce-EEeeeeeeEEe--cC------ceEEEEeCCC-CCHHHHHHH-HHHHHHHHHHc-----CCceEEEEEEEEeCC
Q 013729 76 GRDKSI-LCYPVVETIHK--EN------ICHIVKAPAA-VPWKISELA-TDVAHKAVSSL-----EGAGIFAVELFWTNN 139 (437)
Q Consensus 76 d~~G~~-~~~~~~e~~~~--~g------~~~~~~~P~~-l~~~~~~~i-~~~a~~i~~al-----g~~G~~~ve~~~~~d 139 (437)
| |+. ..+...++... .+ .....+.|+. +++++.+++ ++++.+++++| ++.|++++||+++++
T Consensus 221 d--G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~ 298 (451)
T 2yrx_A 221 N--GEKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATAN 298 (451)
T ss_dssp E--TTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETT
T ss_pred c--CCEEEEeeeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCC
Confidence 5 443 33332222111 11 1133567887 999998888 77888877765 678999999999988
Q ss_pred CcEEEEEEcCCCCCCCCceee-eccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCc-c---CCCccccccchhhh
Q 013729 140 GQILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAE-G---ERGFYLAHQLIGKA 214 (437)
Q Consensus 140 g~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~-~---~~~~~p~~~~~~~~ 214 (437)
| +||+|||||+++++++++. .+++|+.+.+++.+.|.. ++.... ...++..++.... + ...+. ..+++++
T Consensus 299 g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~~-~~~~~~-~~~~~~~~l~~~g~p~~~~~g~~--i~~~~~~ 373 (451)
T 2yrx_A 299 G-PKVIEFNARFGDPEAQVVLPRLKTDLVEAVLAVMDGKE-LELEWT-DEAVLGVVLAAKGYPGAYERGAE--IRGLDRI 373 (451)
T ss_dssp E-EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHTTCC-CCCCBC-SSEEEEEEEEETTTTSSCCCCCE--EBCGGGS
T ss_pred C-cEEEEEecCCCCcHHHHHHHHcCCCHHHHHHHHhcCCC-CCcccc-CCceEEEEEecCCcCCCCCCCCc--CcCcccc
Confidence 8 9999999999987765443 567999998888877754 443222 2244555554321 1 11110 0144444
Q ss_pred hccCCceEEEeccc-----cccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 215 LSIPGATVHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 215 ~~~pg~~~~~~~~~-----~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
. |+++++++|.. ...+++++|+|++.|+|.+||+++++++++++++
T Consensus 374 -~-~~~~v~~~G~~~~~~~~~~~~~rvg~v~~~g~~~~ea~~~~~~~~~~i~~ 424 (451)
T 2yrx_A 374 -S-PDALLFHAGTKREGGAWYTNGGRVLLLAAKGETLAKAKEKAYEQLAAIDC 424 (451)
T ss_dssp -C-TTSEEEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBC
T ss_pred -C-CCCEEEeCcccccCCeEEcCCCeEEEEEEEeCCHHHHHHHHHHHhhcccc
Confidence 4 88887777653 3445799999999999999999999999998875
No 46
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.95 E-value=2.2e-27 Score=267.09 Aligned_cols=243 Identities=17% Similarity=0.196 Sum_probs=191.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKELAVIVVRGRDK 79 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~I~g~~E~sv~~~~d~~G 79 (437)
.+.+.+|+.++++++|||+||||..++ ||+|+.+++|++|+.++++.+. ...+.++||+||+|.+|+++++++|.+|
T Consensus 148 ~v~~~~ea~~~~~~ig~PvVvKp~~~~-Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~~E~~v~v~~d~~g 226 (1073)
T 1a9x_A 148 IAHTMEEALAVAADVGFPCIIRPSFTM-GGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKND 226 (1073)
T ss_dssp EESSHHHHHHHHHHHCSSEEEEETTCC-TTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTSEEEEEEEEECTTC
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCC-CCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCCeEEEEEEEEeCCC
Confidence 357899999999999999999998766 8999999999999999987643 2224599999999878999999999889
Q ss_pred ceEEeeeeeeEE----ecCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCc-eEEEEEEEEeC-CCcEEEEEEcCCCC
Q 013729 80 SILCYPVVETIH----KENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGA-GIFAVELFWTN-NGQILLNEVAPRPH 152 (437)
Q Consensus 80 ~~~~~~~~e~~~----~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~-G~~~ve~~~~~-dg~~~viEiNpR~~ 152 (437)
+++.++..++.. ..|+ ...+.|+. ++++..+++++.+.++++++|++ |.+|+||++++ +|++||+|||||++
T Consensus 227 ~~v~~~~~e~~dp~~v~~g~-s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g~~~viEiNpR~~ 305 (1073)
T 1a9x_A 227 NCIIVCSIENFDAMGIHTGD-SITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVS 305 (1073)
T ss_dssp CEEEEEEEEESSCTTSCGGG-SCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTCCEEEEEEESSCC
T ss_pred CEEEEEEEecccCCccccCc-EEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccCceEEEEEEECCCCCEEEEEecCCCC
Confidence 887766555431 1233 44567885 99999999999999999999999 99999999997 68899999999999
Q ss_pred CCCCceeeeccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCccCCCccccccchhh-hhccCCceEEEecccccc
Q 013729 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEMR 231 (437)
Q Consensus 153 ~sg~~~~~~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~pg~~~~~~~~~~~~ 231 (437)
++..++..++|+++.+.+++.++|.+++...... .....+ ..|.| ..+. +.++|+|.+++|++...+
T Consensus 306 ~ss~l~~~atG~~l~~~~~~~a~G~~l~~~~~~i--------~~~~~~-a~f~p---~~~~v~~~ip~~~~~~~~~~~~~ 373 (1073)
T 1a9x_A 306 RSSALASKATGFPIAKVAAKLAVGYTLDELMNDI--------TGGRTP-ASFEP---SIDYVVTKIPRFNFEKFAGANDR 373 (1073)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHTTCCGGGSBCTT--------TTTCSB-SCSCC---BCSSEEEEEEECCGGGCTTSCCB
T ss_pred ccHHHHHHHhCCCHHHHHHHHHcCCChHHhhccc--------cCccCH-HHccc---CCCcEEEEcccccccccCCCCcc
Confidence 8766667788999999999999999988754211 111011 12433 2222 245677776666653333
Q ss_pred C---CceeEEEEEEcCCHHHHHHHHHHhhc
Q 013729 232 Q---QRKMGHITIVGSSMGLVESRLNSLLK 258 (437)
Q Consensus 232 ~---~~~~G~Vi~~G~s~~eA~~k~~~a~~ 258 (437)
. ++++|+||++|+|++||+.++.++++
T Consensus 374 ~~~~~~~~G~v~~~g~~~~ea~~ka~~~l~ 403 (1073)
T 1a9x_A 374 LTTQMKSVGEVMAIGRTQQESLQKALRGLE 403 (1073)
T ss_dssp CCSSCCCCEEEEEEESSHHHHHHHHHHHSS
T ss_pred cCCCccCcEEEEEEcCCHHHHHHHHHHhhc
Confidence 3 46679999999999999999999986
No 47
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.95 E-value=8.7e-26 Score=231.07 Aligned_cols=256 Identities=15% Similarity=0.160 Sum_probs=179.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+++.+++.++++++|||+||||..++ +|+||.+++|.+|+.++++.+.. ....++|||||+| .|+++.++.
T Consensus 127 ~~~~~~ea~~~~~~~g~PvVvKp~~~~-gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~sv~~~~ 204 (431)
T 3mjf_A 127 NFTDVEAALAYVRQKGAPIVIKADGLA-AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDG-EEASFIVMV 204 (431)
T ss_dssp EESCHHHHHHHHHHHCSSEEEEESSSC-TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCCS-EEEEEEEEE
T ss_pred eeCCHHHHHHHHHHcCCeEEEEECCCC-CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeCC-cEEEEEEEE
Confidence 367899999999999999999997665 99999999999999999987542 1245999999996 999999998
Q ss_pred cCCCceEEeeeeeeEEe--cCc------eEEEEeCCC-CCHHHHHHHHHH----HHHHHHHcCC--ceEEEEEEEEeCCC
Q 013729 76 GRDKSILCYPVVETIHK--ENI------CHIVKAPAA-VPWKISELATDV----AHKAVSSLEG--AGIFAVELFWTNNG 140 (437)
Q Consensus 76 d~~G~~~~~~~~e~~~~--~g~------~~~~~~P~~-l~~~~~~~i~~~----a~~i~~alg~--~G~~~ve~~~~~dg 140 (437)
|+. +++.++..+...+ +++ .+..+.|++ ++++..+++.+. +.++++++|+ +|++++||+++++|
T Consensus 205 dg~-~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~~g 283 (431)
T 3mjf_A 205 DGE-NVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADG 283 (431)
T ss_dssp ESS-CEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECTTS
T ss_pred cCC-EEEEEEeeEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeCCC
Confidence 754 5655554433221 111 134577988 999999999876 6677777655 89999999999888
Q ss_pred cEEEEEEcCCCCCCCCce-eeeccccHHHHHHHHHhCCCCCCCCCCC-CcEEEEEeeccCccCCCcccc--ccchhhhhc
Q 013729 141 QILLNEVAPRPHNSGHHT-IESCYTSQFEQHMRAVVGLPLGDPSMKT-PAAIMYNLLGEAEGERGFYLA--HQLIGKALS 216 (437)
Q Consensus 141 ~~~viEiNpR~~~sg~~~-~~~~~~~~~~~~~~~a~G~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~ 216 (437)
++||+|+|||+|.+.... ...+++|+++.+++.+.|.. +...... ..+++..++...+....+... ..+++++..
T Consensus 284 ~~~viEiN~R~G~~~~~~i~~~~g~dl~~~~~~~~~G~l-~~~~~~~~~~~a~~vv~a~~gyp~~~~~g~~i~~~~~~~~ 362 (431)
T 3mjf_A 284 QPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGTQGKL-NEKTSDWDERPSLGVVLAAGGYPADYRQGDVIHGLPQQEV 362 (431)
T ss_dssp CEEEEEECGGGSTTTHHHHHHHBCSCHHHHHHHHHTTCG-GGCCCCBCSSCEEEEEEEETTTTSCCCCCCBCBCCCSSCB
T ss_pred CeEEEEEecCCCCcHHHHHHHHHCCCHHHHHHHHHcCCC-CCCCccccCCcEEEEEecCCCcCccCCCCCEeeCCccccC
Confidence 899999999998544332 23568999999999999963 2222211 123333334332221111110 013333222
Q ss_pred cCCceEEEecc------ccccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 217 IPGATVHWYDK------PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 217 ~pg~~~~~~~~------~~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
+++.+...+. .....+.|+++|++.|+|.+||.++++++++.|++
T Consensus 363 -~~~~~~~ag~~~~~~~~~~~~ggRv~~v~~~g~~~~~A~~~a~~~~~~i~~ 413 (431)
T 3mjf_A 363 -KDGKVFHAGTKLNGNHEVVTNGGRVLCVTALGETVAQAQQYAYQLAEGIQW 413 (431)
T ss_dssp -TTEEEEESSEEECTTSCEEECSSEEEEEEEECSSHHHHHHHHHHHHTTCBC
T ss_pred -CCcEEEEeeeEecCCCEEEecCCeEEEEEEecCCHHHHHHHHHHHhccCCC
Confidence 5554333221 11223799999999999999999999999998875
No 48
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.95 E-value=1.4e-25 Score=228.81 Aligned_cols=248 Identities=13% Similarity=0.153 Sum_probs=176.5
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~ 75 (437)
.+++.+|+.++++++|||+||||..++ +|+||++++|.+|+.++++.+... ...++|||||+| .|+++.++.
T Consensus 122 ~~~~~~~~~~~~~~~~~P~vvKp~~~~-~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~sv~~~~ 199 (422)
T 2xcl_A 122 TFTSFDEAKAYVQEKGAPIVIKADGLA-AGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSG-EEFSLMAFV 199 (422)
T ss_dssp EESCHHHHHHHHHHHCSSEEEEESSCG-GGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCcC-cEEEEEEEE
Confidence 357899999999999999999997765 899999999999999999876321 245999999996 999999998
Q ss_pred cCCCce-EEeeeeeeEEe--cC------ceEEEEeCCC-CCHHHHHHHH-HHHHHHHHHc-----CCceEEEEEEEEeCC
Q 013729 76 GRDKSI-LCYPVVETIHK--EN------ICHIVKAPAA-VPWKISELAT-DVAHKAVSSL-----EGAGIFAVELFWTNN 139 (437)
Q Consensus 76 d~~G~~-~~~~~~e~~~~--~g------~~~~~~~P~~-l~~~~~~~i~-~~a~~i~~al-----g~~G~~~ve~~~~~d 139 (437)
| |+. +.+....+... .+ .....+.|+. ++++..+++. +++.+++++| +++|++++||+++++
T Consensus 200 d--G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~~ 277 (422)
T 2xcl_A 200 K--GEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTEN 277 (422)
T ss_dssp E--TTEEEECCCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETT
T ss_pred c--CCEEEecceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeCC
Confidence 5 443 33333222111 11 1123567887 9999988884 4888887765 678999999999988
Q ss_pred CcEEEEEEcCCCCCCCCceee-eccccHHHHHHHHHhCCCCCCCCCCCCcEEEEEeeccCc-c---CC--Cccccccchh
Q 013729 140 GQILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAE-G---ER--GFYLAHQLIG 212 (437)
Q Consensus 140 g~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~a~G~~l~~~~~~~~~~~~~~~~~~~~-~---~~--~~~p~~~~~~ 212 (437)
| +||+|+|||+++++++++. .++.|+.+.+++.+.| +++....... .++..++...+ + .. .+. +++
T Consensus 278 g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g-~l~~~~~~~~-~~~~~~~~~~g~~~~~~~g~~i~----~~~ 350 (422)
T 2xcl_A 278 G-SKVIEFNARFGDPETQVVLPRMESDLVQVLLDLLDD-KEVDLRWKDT-AAVSVVLASEGYPESYAKGTPIG----SLA 350 (422)
T ss_dssp E-EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTT-CCCCCCBCSC-EEEEEEEEETTTTSCCCSCCBCC----CCC
T ss_pred C-cEEEEEecCCCCcHHHHHHHhcCCCHHHHHHHHHcC-CcCcccccCC-ceEEEEEECCCCCCCCCCCCccc----Ccc
Confidence 8 9999999999988766443 5678998888877666 4554432222 33333333221 1 00 111 333
Q ss_pred hhhccCCceEEEecc-----ccccCCceeEEEEEEcCCHHHHHHHHHHhhccCCc
Q 013729 213 KALSIPGATVHWYDK-----PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (437)
Q Consensus 213 ~~~~~pg~~~~~~~~-----~~~~~~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~ 262 (437)
++ . |++.++.++. .....++|+|+|++.|+|.++|+++++++++.+++
T Consensus 351 ~~-~-~~~~~~~~g~~~~~~~~~~~~~r~~~v~~~g~~~~~a~~~~~~~~~~i~~ 403 (422)
T 2xcl_A 351 AE-T-EQVVVFHAGTKAEGGEFVTNGGRVANVTAFDETFEAARDRVYKAVDEIFK 403 (422)
T ss_dssp CC-S-SSEEEEESSEEECSSSEEECSSEEEEEEEEESSHHHHHHHHHHHHHHHCC
T ss_pred cC-C-CCcEEEEeeeEeeCCEEEeCCCceEEEEEEeCCHHHHHHHHHHHHhccee
Confidence 33 3 7777655541 11122568999999999999999999999998764
No 49
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.94 E-value=2e-26 Score=230.45 Aligned_cols=225 Identities=14% Similarity=0.044 Sum_probs=151.2
Q ss_pred hCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeee-eeEEecC
Q 013729 16 FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV-ETIHKEN 94 (437)
Q Consensus 16 ~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~-e~~~~~g 94 (437)
+|||+||||+.++ ||+|+++++|.+++..+ ...+++||||+| +|++++++.|..+. ..++.. ++....+
T Consensus 124 ig~P~vvKp~~g~-g~~gv~~v~~~~~~~~~-------~~~~~~ee~i~g-~e~sv~~~~d~~~~-~~~~~~~~~~~~~~ 193 (363)
T 4ffl_A 124 SKPPYFVKPPCES-SSVGARIIYDDKDLEGL-------EPDTLVEEYVEG-EVVSLEVVGDGSHF-AVVKETLVHIDETY 193 (363)
T ss_dssp SSSCEEEECSSCC-TTTTCEEEC------CC-------CTTCEEEECCCS-EEEEEEEEEESSCE-EECCCEEEEECTTS
T ss_pred cCCCEEEEECCCC-CCcCeEEeccHHHhhhh-------ccchhhhhhccC-cEEEEEEEEECCeE-EEEEEEEeccCCcc
Confidence 5899999998776 99999999999887532 244899999997 99999999986654 344433 3332223
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC-CceeeeccccHHHHHHHH
Q 013729 95 ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG-HHTIESCYTSQFEQHMRA 173 (437)
Q Consensus 95 ~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg-~~~~~~~~~~~~~~~~~~ 173 (437)
. ...+.|++..+ ++++++.+++++++++|++++||+++++ .+||+|||||+++.. +.+...+|+|++++++++
T Consensus 194 ~-~~~~~p~~~~~----~~~~~a~~~~~~l~~~G~~~vef~~~~~-~~~viEiN~R~~g~~~~~~~~~~g~dl~~~~~~~ 267 (363)
T 4ffl_A 194 D-CHMVTPLPANP----LFRQISHDLAANLPLKGIMDVEAIFGPK-GLRVIEIDARFPSQTPTVVYYSSGINLIELLFRA 267 (363)
T ss_dssp C-EEEEEECCCCH----HHHHHHHHHHHTTTCEEEEEEEEEEETT-EEEEEEEECSCCSSHHHHHHHHHCCCHHHHHHHH
T ss_pred c-ceeecchhHHH----HHHHHHHHHHHhCCccceeeeeeEEeCC-eEEEEEEeCCCCCChHHHHHHHHCcCHHHHHHHH
Confidence 3 44566776665 4778899999999999999999999965 499999999987532 245567899999999999
Q ss_pred HhCCCCCCCCCCC-CcEEEEEeeccCccCCCccccccchhhhhc-cCCce-EEEeccc---cccCCceeEEEEEEcCCHH
Q 013729 174 VVGLPLGDPSMKT-PAAIMYNLLGEAEGERGFYLAHQLIGKALS-IPGAT-VHWYDKP---EMRQQRKMGHITIVGSSMG 247 (437)
Q Consensus 174 a~G~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~pg~~-~~~~~~~---~~~~~~~~G~Vi~~G~s~~ 247 (437)
++|.+++...... ..++...+.....+ .+.| .-+.+.. .+++. ++...+. ....++++|+|+++|+|++
T Consensus 268 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vi~~G~~~~ 342 (363)
T 4ffl_A 268 FTDGVEEIRAIPENKYCIYEHLMFGENG--VLIP---VGEQVLSMGSDYGKFYEEPGIEIFLCKGEYPVFTMVFWGKDRE 342 (363)
T ss_dssp TTTCCCCC----CCCEEEEEEEEECGGG--BEEE---CCHHHHTTCSEEEEEEEETTEEEEEEESSSCEEEEEEEESSHH
T ss_pred HCCCCCCccccCCCceEEEEEEecCCCC--ccCC---CCceEEecCCCeeEEEecCCCCCEecCCCCceEEEEEEECCHH
Confidence 9999988654433 33444444443322 1221 1112221 12221 1111110 1122679999999999999
Q ss_pred HHHHHHHHhhccCC
Q 013729 248 LVESRLNSLLKEDS 261 (437)
Q Consensus 248 eA~~k~~~a~~~i~ 261 (437)
||++|++++++.++
T Consensus 343 eA~~k~~~al~~i~ 356 (363)
T 4ffl_A 343 ETGAKRCKGLSVLK 356 (363)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 50
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.90 E-value=2.5e-22 Score=200.54 Aligned_cols=144 Identities=22% Similarity=0.252 Sum_probs=120.4
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeee
Q 013729 7 ESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPV 86 (437)
Q Consensus 7 ~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~ 86 (437)
.++.++++++|||+||||++++ ||+||.+|+|.+||.++++.+...++.+++|+||+| +|+++.++.+.. ....++
T Consensus 167 ~~~~~~~~~lg~PvvVKP~~gg-~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~G-~e~~v~vl~~~~--~~~~~v 242 (357)
T 4fu0_A 167 AAMKEIEANLTYPLFIKPVRAG-SSFGITKVIEKQELDAAIELAFEHDTEVIVEETING-FEVGCAVLGIDE--LIVGRV 242 (357)
T ss_dssp HHHHHHHHHCCSSEEEEETTCS-SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCCS-EEEEEEEEESSS--EEECCC
T ss_pred HHHHHHHHhcCCCEEEEECCCC-CCCceEEeccHHhHHHHHHHHhccCCeEEEEEecCC-EEEEEEEEecCC--ceEEEE
Confidence 4566778899999999998877 899999999999999999998877778999999996 999999997643 333333
Q ss_pred eeeEEe----------cCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 87 VETIHK----------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 87 ~e~~~~----------~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.+.... .+.......|+.++++..+++++++.+++++||++|++++||++++||++||+|||||||-|
T Consensus 243 ~~~~~~~~~~d~~~k~~~~~~~~~~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~dg~~~vlEvNt~PG~t 320 (357)
T 4fu0_A 243 DEIELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTPSGEIVFNEVNTIPGFT 320 (357)
T ss_dssp EEEEECHHHHTSCSBCSSCCEEEESSCSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCS
T ss_pred EEEEcccccccccccccCCCceEecCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeCCCCEEEEEEeCCCCCC
Confidence 222211 12234556899999999999999999999999999999999999999999999999999854
No 51
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=1.5e-22 Score=209.26 Aligned_cols=181 Identities=16% Similarity=0.111 Sum_probs=144.1
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------------CCCCcEEEeeccCCCe--
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------------GFDRGLYVEKWAPFVK-- 67 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------------~~~~~~lvEe~I~g~~-- 67 (437)
.+.+.+++.++++++|||+||||..++ ||+|+.+++|.+|+.++++.+. ...+.++|||||+|.+
T Consensus 159 ~v~s~ee~~~~~~~lg~PvVVKP~~g~-gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~ 237 (474)
T 3vmm_A 159 RVTTLEDFRAALEEIGTPLILKPTYLA-SSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGD 237 (474)
T ss_dssp EECSHHHHHHHHHHSCSSEEEEESSCC-TTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHH
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCC-cCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceee
Confidence 367899999999999999999998876 9999999999999999987642 1235699999999843
Q ss_pred ---------EEEEEEEEcCCCceEEeeeeeeEEec-CceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEE-EEEEEE
Q 013729 68 ---------ELAVIVVRGRDKSILCYPVVETIHKE-NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIF-AVELFW 136 (437)
Q Consensus 68 ---------E~sv~~~~d~~G~~~~~~~~e~~~~~-g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~-~ve~~~ 136 (437)
|++++++.. +|+...+...+..... ........|+.++++..+++.+.+.++++++|++|.+ |+||++
T Consensus 238 ~~q~~~~~~e~sv~~v~~-dg~~~~v~i~~~~~~~~~~~~~~~~Pa~l~~~~~~~l~~~a~~~~~alG~~g~~~~vef~~ 316 (474)
T 3vmm_A 238 WYQTEGYSDYISIEGIMA-DGEYFPIAIHDKTPQIGFTETSHITPSILDEEAKKKIVEAAKKANEGLGLQNCATHTEIKL 316 (474)
T ss_dssp HCSSSSSCSEEEEEEEEE-TTEEEEEEEEEECCCBTTBCCEEEESCCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE
T ss_pred eeecccccceeEEEEEEE-CCeEEEEEEEeeccCCCccceEEEECCCCCHHHHHHHHHHHHHHHHHcCCCCccEEEEEEE
Confidence 388886543 5665544433322111 2224457899999999999999999999999999877 799999
Q ss_pred eCCCcEEEEEEcCCCCCCC--CceeeeccccHHHHHHHHHh-CCCCCCCCC
Q 013729 137 TNNGQILLNEVAPRPHNSG--HHTIESCYTSQFEQHMRAVV-GLPLGDPSM 184 (437)
Q Consensus 137 ~~dg~~~viEiNpR~~~sg--~~~~~~~~~~~~~~~~~~a~-G~~l~~~~~ 184 (437)
+++|++||+|+|||++++. ..+...+|+|+++++++.++ |.+++....
T Consensus 317 ~~dg~~~~iEvNpR~~G~~~~~~~~~~tG~dl~~~~i~~a~~G~~l~~~~~ 367 (474)
T 3vmm_A 317 MKNREPGLIESAARFAGWNMIPNIKKVFGLDMAQLLLDVLCFGKDADLPDG 367 (474)
T ss_dssp EGGGEEEEEEEESSCCSTTHHHHHHHHHCCCHHHHHHHHHHHGGGSCCCSS
T ss_pred cCCCCEEEEEEeCCCCCCchHHHHHHHHCcCHHHHHHHHHcCCCCCCCCcc
Confidence 9889999999999999543 23455789999999999999 999876543
No 52
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.89 E-value=8.1e-22 Score=198.22 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=129.1
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeee
Q 013729 9 ARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE 88 (437)
Q Consensus 9 ~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e 88 (437)
+.++++++|||+||||..++ ||+||.+|+|.+||.++++.+...+..+|||+||+|.+|+++.++.+.++.+ .+..+
T Consensus 166 ~~~~~~~~g~PvvVKP~~~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~~E~~v~vl~~~~~~~--~~~~e 242 (377)
T 1ehi_A 166 WDKIVAELGNIVFVKAANQG-SSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLV--SEIGA 242 (377)
T ss_dssp HHHHHHHHCSCEEEEESSCC-TTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCCCSCEEEEEEEESSSCEE--EEEEE
T ss_pred HHHHHHhcCCCEEEEeCCCC-CCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCceEEEEEEcCCCcEE--EeeEE
Confidence 66777889999999998877 8999999999999999999876666679999999976899999998654332 33222
Q ss_pred eEE----------------ecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCC
Q 013729 89 TIH----------------KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (437)
Q Consensus 89 ~~~----------------~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~ 152 (437)
... ..|.....+.|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||
T Consensus 243 i~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~vlEiN~rpg 322 (377)
T 1ehi_A 243 HTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEPNTLPG 322 (377)
T ss_dssp EECTTSSSSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCC
T ss_pred EEecCCCCcCceeCHHhcccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEeCCCCEEEEEEeCCCC
Confidence 221 0120134567999999999999999999999999999999999999889999999999999
Q ss_pred CCCCc----eeeeccccH---HHHHHHHHh
Q 013729 153 NSGHH----TIESCYTSQ---FEQHMRAVV 175 (437)
Q Consensus 153 ~sg~~----~~~~~~~~~---~~~~~~~a~ 175 (437)
.+.+- ...++|+|+ +..+++.++
T Consensus 323 ~t~~s~~p~~~~a~G~~~~~l~~~li~~al 352 (377)
T 1ehi_A 323 FTNMSLFKRLWDYSDINNAKLVDMLIDYGF 352 (377)
T ss_dssp CSTTCGGGTGGGGGTCCHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 75431 234677777 444555554
No 53
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.88 E-value=2.8e-21 Score=193.68 Aligned_cols=142 Identities=20% Similarity=0.245 Sum_probs=114.1
Q ss_pred HHHHHHhhCCc-EEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeee
Q 013729 9 ARRAGKQFGYP-LMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (437)
Q Consensus 9 ~~~~a~~~gyP-vvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~ 87 (437)
+.++++++||| +||||..++ ||+||.+|+|.+||.++++.+..+++.+|||+||+| +|+++.++.+. .....+..
T Consensus 171 ~~~~~~~lg~P~vvVKP~~gg-ss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~--~~~~~~~~ 246 (372)
T 3tqt_A 171 YQRLLDRWGTSELFVKAVSLG-SSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIRG-REIECAVLGNG--APKASLPG 246 (372)
T ss_dssp HHHHHHHC---CEEEEESSCC-SGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCCS-EEEEEEEEESS--SCEECCCE
T ss_pred HHHHHHhcCCCeEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCCC-EEEEEEEEeCC--CceEeeeE
Confidence 56778899999 999998877 899999999999999999988766677999999996 99999999864 33333332
Q ss_pred eeE-----------EecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 88 ETI-----------HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 88 e~~-----------~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
+.. +..|.......|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||-|
T Consensus 247 ei~~~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~dg~~~vlEINt~PG~t 324 (372)
T 3tqt_A 247 EIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTPNNKVLVNEINTIPGFT 324 (372)
T ss_dssp EEECC---------------CEEESCCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCS
T ss_pred EEecCCCccchhhcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeCCCcEEEEEEECCCCcC
Confidence 221 1122224556799999999999999999999999999999999999988999999999999854
No 54
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.87 E-value=7.4e-22 Score=198.59 Aligned_cols=144 Identities=21% Similarity=0.286 Sum_probs=112.8
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeee
Q 013729 7 ESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPV 86 (437)
Q Consensus 7 ~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~ 86 (437)
+++.++++++|||+||||..++ +|+|+.+|+|.+||.++++.+..+++.++||+||+| +|+++.++.+. ....++.
T Consensus 191 ~~~~~~~~~lg~PvvVKP~~gg-ss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~G-~E~~v~vl~d~--~~~~~~~ 266 (383)
T 3k3p_A 191 SKLAEVEEKLIYPVFVKPANMG-SSVGISKAENRTDLKQAIALALKYDSRVLIEQGVDA-REIEVGILGNT--DVKTTLP 266 (383)
T ss_dssp HHHHHHHHHCCSSEEEEECC-------CEEESSHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEEESS--SCEECCC
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-eEEEEEEEeCC--CeeEEee
Confidence 5778888999999999998877 899999999999999999877555566999999996 99999999753 4444443
Q ss_pred eeeEEecC----------ceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013729 87 VETIHKEN----------ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (437)
Q Consensus 87 ~e~~~~~g----------~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~s 154 (437)
.+.....+ .......|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||-|
T Consensus 267 ~ei~~~~~~~d~~~ky~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~~g~~~vlEINtrPG~t 344 (383)
T 3k3p_A 267 GEIVKDVAFYDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTEDGKVYLNELNTMPGFT 344 (383)
T ss_dssp EEEC-----------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCC
T ss_pred EEEecCCCccchhhcccCCCeeEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEECCCCEEEEEeeCCCCCC
Confidence 33221111 113356799999999999999999999999999999999999988999999999999854
No 55
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.87 E-value=2e-21 Score=194.33 Aligned_cols=143 Identities=22% Similarity=0.307 Sum_probs=116.4
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeee
Q 013729 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (437)
Q Consensus 8 e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~ 87 (437)
++.++++++|||+||||..++ +|+||.+|++.+||.++++.+...+..+|||+||+| +|+++.++.+.++.+ .+..
T Consensus 162 ~~~~~~~~~g~PvvvKP~~g~-~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~G-~E~~v~vl~~~~~~~--~~~~ 237 (364)
T 2i87_A 162 ILKLVNDKLNYPVFVKPANLG-SSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNA-REIEVAVLGNDYPEA--TWPG 237 (364)
T ss_dssp HHHHHHHHCCSSEEEEESSCS-SCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCCC-EEEEEEEEESSSCEE--CCCE
T ss_pred HHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCccC-eEEEEEEEcCCCcEE--eeeE
Confidence 567778899999999998877 899999999999999999887655567999999997 999999998654322 2221
Q ss_pred eeE-----------EecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 88 ETI-----------HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 88 e~~-----------~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
+.. +..|. ...+.|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||.+.
T Consensus 238 e~~~~~~~~~~~~k~~~g~-~~~~~pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~viEiN~rpg~t~ 315 (364)
T 2i87_A 238 EVVKDVAFYDYKSKYKDGK-VQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTEDNQIYINETNAMPGFTA 315 (364)
T ss_dssp EECCSCCC------------CCEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCST
T ss_pred EEecCCCcCCHHHcccCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCEEEEEEeCCCCCCc
Confidence 111 11122 23457888999999999999999999999999999999999889999999999999653
No 56
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.87 E-value=3e-21 Score=191.50 Aligned_cols=138 Identities=23% Similarity=0.336 Sum_probs=115.9
Q ss_pred HhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeeeEE--
Q 013729 14 KQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIH-- 91 (437)
Q Consensus 14 ~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~~~-- 91 (437)
+++|||+||||..++ +|+||.+|++.+||.++++.+...+..++||+||+| +|+++.++.+.++ +..++..+...
T Consensus 162 ~~~~~PvvvKP~~~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~G-~E~~v~vl~~~~~-~~~~~~~ei~~~~ 238 (343)
T 1e4e_A 162 ATFTYPVFVKPARSG-SSFGVKKVNSADELDYAIESARQYDSKILIEQAVSG-CEVGCAVLGNSAA-LVVGEVDQIRLQY 238 (343)
T ss_dssp GGSCSCEEEEESSCC-TTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCCS-EEEEEEEEEETTC-CEECCCEEEEESS
T ss_pred hccCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcCC-eEEEEEEEeCCCC-eEEeeeEEEeeCC
Confidence 578999999998877 899999999999999999887655566999999996 9999999987654 44554443221
Q ss_pred ---------e----cCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 92 ---------K----ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 92 ---------~----~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
. .|. ...+.|+.++++..+++++++.+++++||++|++++||+++++|++||+|||+|||.+.
T Consensus 239 ~~~~~~~k~~~~~~~g~-~~~~~p~~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~viEiN~rpg~t~ 314 (343)
T 1e4e_A 239 GIFRIHQEVEPEKGSEN-AVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEVNTLPGFTS 314 (343)
T ss_dssp SCCCGGGSSSGGGCCSS-EEECSSCSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCEEEEEEESSCCCST
T ss_pred CccCHhhcccccCCCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCCEEEEEeeCCCCCCc
Confidence 1 232 34567888999999999999999999999999999999999889999999999999753
No 57
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.87 E-value=1.3e-21 Score=197.13 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=117.6
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeee
Q 013729 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (437)
Q Consensus 8 e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~ 87 (437)
++.++++++|||+||||..++ ||+|+.+|+|.+||.++++.+...++.+|||+||+| +|+++.++.+....+......
T Consensus 189 ~~~~~~~~lg~PvvVKP~~gg-ss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~~~~~~~~gei 266 (386)
T 3e5n_A 189 DVDTLIAQLGLPLFVKPANQG-SSVGVSQVRTADAFAAALALALAYDHKVLVEAAVAG-REIECAVLGNAVPHASVCGEV 266 (386)
T ss_dssp CHHHHHHHHCSSEEEEESBSC-SSTTCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-EEEEEEEECSSSCEEEEEEEE
T ss_pred hHHHHHHhcCCCEEEEECCCC-cCCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCCC-eEEEEEEEeCCCceEEEeEEE
Confidence 677888899999999998877 899999999999999999988776677999999997 999999997654332211110
Q ss_pred e---------eEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 88 E---------TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 88 e---------~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
. ..+..+.....+.|+.++++..+++++++.+++++||++|++++||+++++|++|++|||||||-|.
T Consensus 267 ~~~~~~~d~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~ 343 (386)
T 3e5n_A 267 VVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEVNTLPGFTR 343 (386)
T ss_dssp CC-----------------CEESSCSSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTCCEEEEEEESSCCCST
T ss_pred EeCCcccchhcccCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCcEEEEEeECCCCCCc
Confidence 0 0011112234567999999999999999999999999999999999999889999999999998543
No 58
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.87 E-value=1.4e-21 Score=195.65 Aligned_cols=144 Identities=22% Similarity=0.314 Sum_probs=119.1
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeee
Q 013729 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (437)
Q Consensus 8 e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~ 87 (437)
++.++++++|||+||||..++ +|.|+.+|+|.+|+.++++.+..+++.++||+||+| +|+++.++.+..+.+ .+..
T Consensus 170 ~~~~~~~~lg~PvvVKP~~gg-ss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~~~~~--~~~~ 245 (364)
T 3i12_A 170 SFAEVESRLGLPLFVKPANQG-SSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIKG-REIECAVLGNDNPQA--STCG 245 (364)
T ss_dssp CHHHHHHHHCSSEEEEETTCC-TTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEEESSSCEE--EEEE
T ss_pred hHHHHHHhcCCCEEEEECCCC-CCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcCC-eEEEEEEEeCCCceE--eeeE
Confidence 677888899999999998877 899999999999999999887555566999999997 999999998654222 2222
Q ss_pred eeE-----E------ecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 88 ETI-----H------KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 88 e~~-----~------~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
+.. + ..+.....+.|+.++++..+++++++.+++++||++|++++||+++++|++|++|||+|||.+.
T Consensus 246 ei~~~~~~~~~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~ 324 (364)
T 3i12_A 246 EIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPGFTN 324 (364)
T ss_dssp EEECCTTCC--TTTTSGGGGCEEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCST
T ss_pred EEecCCCccCHHHcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEecCCCEEEEEeeCCCCCCC
Confidence 211 1 1222255678999999999999999999999999999999999999889999999999998643
No 59
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.87 E-value=3.5e-21 Score=193.24 Aligned_cols=140 Identities=22% Similarity=0.317 Sum_probs=117.1
Q ss_pred HHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeeeE
Q 013729 11 RAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETI 90 (437)
Q Consensus 11 ~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~~ 90 (437)
+.++++|||+||||..++ +|+|+.+|+|.+||.++++.+..+++.+|||+||+| +|+++.++.+..+.+..++..+..
T Consensus 182 ~~~~~lg~PvvVKP~~gg-ss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~~~~~~~~~~~ei~ 259 (373)
T 3lwb_A 182 QECERLGLPVFVKPARGG-SSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISG-RELECGVLEMPDGTLEASTLGEIR 259 (373)
T ss_dssp HHHHHHCSCEEEEESBCS-TTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCEE-EEEEEEEEECTTSCEEECCCEEEE
T ss_pred HHHHhcCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCCC-eEEEEEEEECCCCceEEeeeeEEE
Confidence 346789999999998877 899999999999999999988766667999999996 999999998766533444433322
Q ss_pred Ee-----------------cCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 91 HK-----------------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 91 ~~-----------------~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
.. .+. ...+.|+.++++..+++++++.+++++||++|++++||+++++|+ ||+|||||||.
T Consensus 260 ~~~~~~~~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~-~vlEIN~~PG~ 337 (373)
T 3lwb_A 260 VAGVRGREDSFYDFATKYLDDA-AELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGP-VINEINTMPGF 337 (373)
T ss_dssp CCSTTCSEESSSCHHHHHTCTT-CEEESSCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEE-EEEEEESSCCC
T ss_pred ccCCCCccccccchhhcccCCC-ceEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCC-EEEEecCCCCC
Confidence 11 122 345679999999999999999999999999999999999998898 99999999985
Q ss_pred C
Q 013729 154 S 154 (437)
Q Consensus 154 s 154 (437)
+
T Consensus 338 t 338 (373)
T 3lwb_A 338 T 338 (373)
T ss_dssp S
T ss_pred C
Confidence 4
No 60
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.87 E-value=2.3e-21 Score=190.25 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=113.4
Q ss_pred CCHHHHHHHH----HhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CCeEEEEEEEEcCC
Q 013729 4 NDLESARRAG----KQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRGRD 78 (437)
Q Consensus 4 ~s~~e~~~~a----~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~-g~~E~sv~~~~d~~ 78 (437)
.+.+++.+++ +++|||+||||..++ +|+|+.+|+|.+|+.++++.+...++.++||+||+ | +|+++.++.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~g~PvvvKP~~~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~G-~E~~v~vl~~~~ 206 (317)
T 4eg0_A 129 MRGDDYAARATDIVAKLGLPLFVKPASEG-SSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEGG-GEYTACIAGDLD 206 (317)
T ss_dssp ETTSCHHHHHHHHHHHHCSCEEEEECC------CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCSS-EEEEEEEETTCC
T ss_pred ECchhHHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCCC-cEEEEEEECCcc
Confidence 3445566666 889999999998876 89999999999999999998776667799999999 6 999999996543
Q ss_pred CceEEeeeeeeEE------ecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCC
Q 013729 79 KSILCYPVVETIH------KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (437)
Q Consensus 79 G~~~~~~~~e~~~------~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~ 152 (437)
+.+........++ ..| ......|+.++++..+++.+++.+++++||++|++++||+++++|++||+|||||||
T Consensus 207 ~~~~~i~~~~~~~~~~~k~~~g-~~~~~~P~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~~pg 285 (317)
T 4eg0_A 207 LPLIKIVPAGEFYDYHAKYVAN-DTQYLIPCGLPAEQETELKRIARRAFDVLGCTDWGRADFMLDAAGNAYFLEVNTAPG 285 (317)
T ss_dssp CCCEEEEC----------------CEEESSCSSCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTCCEEEEEEESSCC
T ss_pred cceEEEeeCCceechhhcccCC-CeeEEcCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCC
Confidence 3322211111111 111 134567889999999999999999999999999999999999889999999999998
Q ss_pred CCC
Q 013729 153 NSG 155 (437)
Q Consensus 153 ~sg 155 (437)
-+.
T Consensus 286 ~t~ 288 (317)
T 4eg0_A 286 MTD 288 (317)
T ss_dssp CST
T ss_pred CCc
Confidence 543
No 61
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.86 E-value=7.4e-21 Score=189.01 Aligned_cols=140 Identities=25% Similarity=0.352 Sum_probs=116.1
Q ss_pred HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeeeEE
Q 013729 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIH 91 (437)
Q Consensus 12 ~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~~~ 91 (437)
+++++|||+||||..++ +|+|+.++++.+|+.++++.+...+..++||+||+| +|+++.++.+.. ....++..+...
T Consensus 160 ~~~~lg~PvvvKP~~~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G-~E~~v~vl~~~~-~~~~~~~~e~~~ 236 (346)
T 3se7_A 160 PTDQLTYPVFVKPARSG-SSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVIG-TEIGCAVMGNGP-ELITGEVDQITL 236 (346)
T ss_dssp CTTTCCSSEEEEESSCC-TTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCCS-EEEEEEEEEETT-EEEECCCEEECC
T ss_pred HHHhcCCCEEEEeCCCC-CCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcCC-EEEEEEEEecCC-CeEEEeeEEEec
Confidence 45678999999998877 899999999999999999988766677999999996 999999998744 334444433211
Q ss_pred ---------------ecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 92 ---------------KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 92 ---------------~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
..+. .....|+.++++..+++.+++.+++++||++|++++||+++++|++|++|||+|||.+.
T Consensus 237 ~~~~~d~~q~~~~ky~~~~-~~~~~pa~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~ 314 (346)
T 3se7_A 237 SHGFFKIHQESTPESGSDN-SAVTVPADISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLTEDGKVVLNEVNTFPGMTS 314 (346)
T ss_dssp C--------------CGGG-SCEESSCCCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTSCEEEEEEESSCCCST
T ss_pred CCCCcCcccchhccccCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEeCCCCEEEEEEeCCCCCCc
Confidence 1111 23467899999999999999999999999999999999999889999999999998643
No 62
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.86 E-value=7.2e-21 Score=187.36 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=109.8
Q ss_pred CHHHHHHHH--HhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEc-CCCce
Q 013729 5 DLESARRAG--KQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRG-RDKSI 81 (437)
Q Consensus 5 s~~e~~~~a--~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d-~~G~~ 81 (437)
+.+++.+++ ++++||+|+||..++ ||+|+++++|.+|+.++++. . ..+++|+||+| +|+++.++.| .+|++
T Consensus 135 ~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~--~--~~~lvee~i~G-~e~~v~~~~d~~~G~~ 208 (331)
T 2pn1_A 135 TMASFEEALAAGEVQLPVFVKPRNGS-ASIEVRRVETVEEVEQLFSK--N--TDLIVQELLVG-QELGVDAYVDLISGKV 208 (331)
T ss_dssp SHHHHHHHHHTTSSCSCEEEEESBC----------------------------CEEEEECCCS-EEEEEEEEECTTTCCE
T ss_pred cHHHhhhhhhcccCCCCEEEEeCCCC-CCCCeEEeCCHHHHHHHHHh--C--CCeEEEecCCC-cEEEEEEEEecCCCeE
Confidence 567777776 478999999998766 89999999999999988764 2 34999999997 9999999998 77887
Q ss_pred EEeeeee-eEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceee
Q 013729 82 LCYPVVE-TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIE 160 (437)
Q Consensus 82 ~~~~~~e-~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~ 160 (437)
+.....+ ...+.|.......+ .. +++.+++.+++++||++|++++||+.+ +|++|++|||||++++.+ ...
T Consensus 209 ~~~~~~~~~~~~~g~~~~~~~~--~~----~~~~~~~~~~~~~lg~~G~~~vd~~~~-~g~~~~iEiN~R~~g~~~-~~~ 280 (331)
T 2pn1_A 209 TSIFIKEKLTMRAGETDKSRSV--LR----DDVFELVEHVLDGSGLVGPLDFDLFDV-AGTLYLSEINPRFGGGYP-HAY 280 (331)
T ss_dssp EEEEEEEEEEEETTEEEEEEEE--CC----HHHHHHHHHHHTTTCCCEEEEEEEEEE-TTEEEEEEEESSCCTTHH-HHH
T ss_pred EEEEEEEEEEecCCceeEeEEe--cc----HHHHHHHHHHHHHhCCcceEEEEEEEc-CCCEEEEEEeCCCCCchH-HHH
Confidence 6443332 22344543322222 22 467889999999999999999999964 778999999999987543 456
Q ss_pred eccccHHHHHHHHHhCCCCCC
Q 013729 161 SCYTSQFEQHMRAVVGLPLGD 181 (437)
Q Consensus 161 ~~~~~~~~~~~~~a~G~~l~~ 181 (437)
.+|+|+++.+++.++|.+++.
T Consensus 281 ~~G~~~~~~~~~~~~g~~~~~ 301 (331)
T 2pn1_A 281 ECGVNFPAQLYRNLMHEINVP 301 (331)
T ss_dssp HTTCCHHHHHHHHHTTCCCCC
T ss_pred HcCCCHHHHHHHHHcCCCCCc
Confidence 778999999999999999875
No 63
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.86 E-value=7e-21 Score=185.07 Aligned_cols=156 Identities=20% Similarity=0.240 Sum_probs=123.1
Q ss_pred HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeeeEE
Q 013729 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIH 91 (437)
Q Consensus 12 ~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~~~ 91 (437)
++++++||+|+||..++ +|+|++++++.+|+.++++.+......++||+||+| +|+++.++ +|++ ++..+...
T Consensus 133 ~~~~~~~p~vvKP~~g~-~~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~g-~e~~v~~~---~g~~--~~~~~~~~ 205 (306)
T 1iow_A 133 EISALGLPVIVKPSREG-SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAIL---GEEI--LPSIRIQP 205 (306)
T ss_dssp HHHTTCSSEEEEETTCC-TTTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCCC-CEEEEEEE---TTEE--CCCEEEEC
T ss_pred HHhccCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcCC-EEEEEEEE---CCCc--cceEEEEe
Confidence 78889999999998776 899999999999999999887644566999999996 99999998 3443 23322211
Q ss_pred ecC----------ceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce---
Q 013729 92 KEN----------ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT--- 158 (437)
Q Consensus 92 ~~g----------~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~--- 158 (437)
..+ .......|+.++++..+++.+++.+++++||+.|++++||+++++|++|++|||||+|++++-.
T Consensus 206 ~~~~~~~~~~~~~g~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~~iEiN~rpg~~~~s~~p~ 285 (306)
T 1iow_A 206 SGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPM 285 (306)
T ss_dssp SSSSSCHHHHHTCSCCEEESSCCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTSCEEEEEEESSCCCSTTCHHHH
T ss_pred CCCeEchhheecCCCeeEEcCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEcCCCCEEEEEecCCCCCCCCCHHHH
Confidence 110 1134567888999999999999999999999999999999999889999999999999765421
Q ss_pred -eeeccccHHHHHHHHH
Q 013729 159 -IESCYTSQFEQHMRAV 174 (437)
Q Consensus 159 -~~~~~~~~~~~~~~~a 174 (437)
...+|+|+.+.+++.+
T Consensus 286 ~~~~~G~~~~~~~~~~~ 302 (306)
T 1iow_A 286 AARQAGMSFSQLVVRIL 302 (306)
T ss_dssp HHHHTTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 2345777777666553
No 64
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.86 E-value=2.2e-21 Score=194.20 Aligned_cols=162 Identities=20% Similarity=0.216 Sum_probs=121.4
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEE-EEEEEcCCCceEEeee
Q 013729 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELA-VIVVRGRDKSILCYPV 86 (437)
Q Consensus 8 e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~s-v~~~~d~~G~~~~~~~ 86 (437)
++.+ ++++|||+||||..++ ||.|+.+|+|.+||.++++.+..++..++||+||+|.+|++ +.+.. +|+....++
T Consensus 177 ~~~~-~~~lg~PvvVKP~~g~-ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~G~~E~svi~v~v--~g~~~~~~~ 252 (367)
T 2pvp_A 177 NALD-LMNFNFPFIVKPSNAG-SSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQGVKEYNLAGCKI--KKDFCFSYI 252 (367)
T ss_dssp GHHH-HCCSCSCEEEEESSCC-TTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCTTCEEEEEEEEEE--TTEEEEEEE
T ss_pred HHHH-HhccCCCEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCCCCceeeEEEEEE--CCEEEEEEE
Confidence 5666 7789999999998877 89999999999999999998766556799999999668977 44443 566544433
Q ss_pred eeeE-----Ee------cCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 87 VETI-----HK------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 87 ~e~~-----~~------~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
+.. +. .|. +..+.|+.++++..+++++++.+++++||++|++++||+++ +|++||+|||||+|.+.
T Consensus 253 -ei~~~~~~~d~~~ky~~g~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~ 329 (367)
T 2pvp_A 253 -EEPNKQEFLDFKQKYLDFS-RNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI-ENEVYLNEINPIPGSLA 329 (367)
T ss_dssp -EETTTTEEECCCCSSCCSC-CCSCCCCCCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE-TTEEEEEEEESSCGGGG
T ss_pred -EEecCCceEcccccccCCC-eeEEecCCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE-CCeEEEEEEeCCCCCCc
Confidence 221 11 111 22356888999999999999999999999999999999999 88899999999998643
Q ss_pred CceeeeccccHHHHHHHHHhCCCCC
Q 013729 156 HHTIESCYTSQFEQHMRAVVGLPLG 180 (437)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~a~G~~l~ 180 (437)
+.... ++-+...+.+.+.++.
T Consensus 330 ~s~~p----~~~~l~~~li~~~~~~ 350 (367)
T 2pvp_A 330 NYLFD----DFKTTLENLAQSLPKT 350 (367)
T ss_dssp GGGSS----SHHHHHHHHHHHCC--
T ss_pred ccccC----CHHHHHHHHHhCcccc
Confidence 32211 4444445555554443
No 65
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.85 E-value=2.1e-20 Score=183.88 Aligned_cols=138 Identities=23% Similarity=0.226 Sum_probs=112.4
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeee---eE-
Q 013729 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE---TI- 90 (437)
Q Consensus 15 ~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e---~~- 90 (437)
++|||+||||..++ +|+|+.+|++.+||.++++.+..++..++||+||+|.+|+++.++.+.++.+....... ..
T Consensus 148 ~~g~PvvvKP~~g~-~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~ei~~~~~~~ 226 (322)
T 2fb9_A 148 PFDPPFFVKPANTG-SSVGISRVERFQDLEAALALAFRYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFY 226 (322)
T ss_dssp CSCSCEEEEETTCC-TTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCSSCEEEEEEEESSSSCEEEEEEEEEEECCEE
T ss_pred ccCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCCCCeeEEEEEEeCCCceEeeeEEEeeCCCcc
Confidence 68999999998877 89999999999999999998876667799999999658999999976543322111111 01
Q ss_pred -----EecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013729 91 -----HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (437)
Q Consensus 91 -----~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg 155 (437)
+..|. ...+.|+.++++..+++++++.+++++||++|++++||+++ +|++||+|||+|||.+.
T Consensus 227 ~~~~k~~~g~-~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~-~g~~~vlEiN~rpg~t~ 294 (322)
T 2fb9_A 227 DYETKYTPGR-AELLIPAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLA-EGELYLNELNTIPGFTP 294 (322)
T ss_dssp ETTTEEECCE-EEEESSCCCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE-TTEEEEEEEESSCCCSS
T ss_pred CHHHcccCCC-eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE-CCcEEEEEEECCCCCCc
Confidence 11232 34568999999999999999999999999999999999999 89999999999999653
No 66
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.83 E-value=2.3e-20 Score=181.92 Aligned_cols=146 Identities=16% Similarity=0.231 Sum_probs=108.1
Q ss_pred CHHHHHH-HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEE
Q 013729 5 DLESARR-AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILC 83 (437)
Q Consensus 5 s~~e~~~-~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~ 83 (437)
+.+++.+ +++++|||+||||..++ ||+|+.++++.+|+.++++.+......++||+||+| +|+++.++ +|+++.
T Consensus 120 ~~~~~~~~~~~~~~~P~vvKP~~~~-~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~G-~e~~v~v~---~g~~~~ 194 (307)
T 3r5x_A 120 KMEDLNFDELDKLGFPLVVKPNSGG-SSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIKG-EEITCSIF---DGKQLP 194 (307)
T ss_dssp SSSCCCHHHHHHHCSSEEEEECC-----CCCEEECSHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEE---TTEECC
T ss_pred ChhhhhHHHHHhcCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCCEEEECCcCC-EEEEEEEE---CCEEee
Confidence 3344433 77889999999998766 899999999999999999876544456999999997 99999986 344321
Q ss_pred e-eeeeeEE-ecC-----ceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCCCCC
Q 013729 84 Y-PVVETIH-KEN-----ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGH 156 (437)
Q Consensus 84 ~-~~~e~~~-~~g-----~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~ 156 (437)
. .+..... .+. .......|..++++..+++.+++.+++++||++|++++||+++ +|++||+|||||||.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~g~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~-~g~~~vlEiN~rpg~~~~ 273 (307)
T 3r5x_A 195 IISIRHAAEFFDYNAKYDDASTIEEVIELPAELKERVNKASLACYKALKCSVYARVDMMVK-DGIPYVMEVNTLPGMTQA 273 (307)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEE-TTEEEEEEEESSCCCSTT
T ss_pred EEEEEcCCcccChhhcCCCCCCeEecCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCeEEEEEEcCCCCCCcc
Confidence 1 1111000 010 0011223888999999999999999999999999999999999 688999999999996543
No 67
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.80 E-value=1.2e-19 Score=173.82 Aligned_cols=161 Identities=19% Similarity=0.227 Sum_probs=114.9
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHh--cCC--CCcEEEeeccCC-CeEEEEEEEEcC
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITAL--GGF--DRGLYVEKWAPF-VKELAVIVVRGR 77 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~--~~~--~~~~lvEe~I~g-~~E~sv~~~~d~ 77 (437)
+.+.+++.++++++|||+|+||..++ +|+|+.++++.+|+.++++.+ ... ...+++|+||+| +.|+++.++
T Consensus 109 ~~~~~~~~~~~~~~~~p~vvKp~~g~-~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~--- 184 (280)
T 1uc8_A 109 ATDREEALRLMEAFGYPVVLKPVIGS-WGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVV--- 184 (280)
T ss_dssp ESSHHHHHHHHHHHCSSEEEECSBCC-BCSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEEEEEE---
T ss_pred eCCHHHHHHHHHHhCCCEEEEECCCC-CcccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEEEEEE---
Confidence 56889999999999999999998776 899999999999999888764 221 345999999997 688888876
Q ss_pred CCceEEeeeeee----EEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 78 DKSILCYPVVET----IHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 78 ~G~~~~~~~~e~----~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
+|+.+. .... +..+........|..+++ ++.+++.+++++||+ |++++||+++++| +|++|||||++.
T Consensus 185 ~~~~~~--~~~~~~~~~~~~~~~g~~~~p~~l~~----~~~~~~~~~~~~lg~-g~~~vD~~~~~~g-~~~iEiN~r~g~ 256 (280)
T 1uc8_A 185 GERAIA--AIYRRSAHWITNTARGGQAENCPLTE----EVARLSVKAAEAVGG-GVVAVDLFESERG-LLVNEVNHTMEF 256 (280)
T ss_dssp TTEEEE--EEEC--------------CEECCCCH----HHHHHHHHHHHHTTC-SEEEEEEEEETTE-EEEEEEETTCCC
T ss_pred CCEEEE--EEEEecCCccccccCCccccCCCCCH----HHHHHHHHHHHHhCC-CeEEEEEEEeCCC-eEEEEEeCCCCc
Confidence 345432 1111 110000011234666765 688999999999999 9999999999876 999999999985
Q ss_pred CCCceeeeccccHHHHHHHHHhCC
Q 013729 154 SGHHTIESCYTSQFEQHMRAVVGL 177 (437)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~a~G~ 177 (437)
+. ....+|+|+.+.+++.++|.
T Consensus 257 ~~--~~~~~G~~~~~~~~~~~~~~ 278 (280)
T 1uc8_A 257 KN--SVHTTGVDIPGEILKYAWSL 278 (280)
T ss_dssp TT--HHHHHCCCHHHHHHHHHHHT
T ss_pred cc--hheeeccCHHHHHHHHHHhh
Confidence 43 45677899999999988764
No 68
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.78 E-value=1.7e-18 Score=168.98 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=106.8
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeeeeEEecC
Q 013729 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKEN 94 (437)
Q Consensus 15 ~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e~~~~~g 94 (437)
+++||+|+||..++ ||+|++++++ .. ..+++|+||+| +|+++.++.+ +.+.............
T Consensus 131 ~~~~P~vvKP~~g~-gs~Gv~~v~~-----------~~--~~~lvEe~I~G-~e~sv~v~~g--~~~~~~~~~~~~~~~~ 193 (305)
T 3df7_A 131 PLDCKFIIKPRTAC-AGEGIGFSDE-----------VP--DGHIAQEFIEG-INLSVSLAVG--EDVKCLSVNEQIINNF 193 (305)
T ss_dssp CCSSSEEEEESSCC-----CBCCSS-----------CC--TTEEEEECCCS-EEEEEEEEES--SSEEEEEEEEEEEETT
T ss_pred cCCCCEEEEeCCCC-CCCCEEEEec-----------CC--CCEEEEeccCC-cEEEEEEEeC--CeEEEEEEeeEeccCc
Confidence 57899999998776 9999999998 23 44999999996 9999999973 2443333222222222
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHHc-CCceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeeccccHHHHHHHH
Q 013729 95 ICHIVKAPAAVPWKISELATDVAHKAVSSL-EGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRA 173 (437)
Q Consensus 95 ~~~~~~~P~~l~~~~~~~i~~~a~~i~~al-g~~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~~~~~~~~~~~~~~ 173 (437)
.......|+.++++..+++.+++.+++++| |++|++++||+++ |++|++|||||++++......++|+|+.+.+++.
T Consensus 194 ~~~g~~~p~~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~--~~~~viEiNpR~~~~~~~~~~~~G~~~~~~~~~~ 271 (305)
T 3df7_A 194 RYAGAVVPARISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS--DQPYVIEINARLTTPVVAFSRAYGASVADLLAGG 271 (305)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES--SSEEEEEEESSCCGGGGGHHHHHSCCHHHHHTTC
T ss_pred eeccccccCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC--CCEEEEEEcCCCCCCHHHHHHHHCCCHHHHHHhc
Confidence 334557799999999999999999999999 9999999999995 5699999999999754444556789999888876
No 69
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.75 E-value=2.8e-17 Score=161.58 Aligned_cols=137 Identities=13% Similarity=0.156 Sum_probs=99.0
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC-----CCcEEEeeccCCCeEEEEEEEEcCC-CceEEeeeee
Q 013729 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF-----DRGLYVEKWAPFVKELAVIVVRGRD-KSILCYPVVE 88 (437)
Q Consensus 15 ~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~-----~~~~lvEe~I~g~~E~sv~~~~d~~-G~~~~~~~~e 88 (437)
+++||+||||..++ ||+|+++|++.+|+.++++.+... ...++|||||+| .|+++.++.+.- +++-.+....
T Consensus 124 ~l~~P~vvKP~~g~-~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~G-~e~~~~~~~~~~~~~v~~~~~~g 201 (334)
T 2r85_A 124 DIEKPVIVKPHGAK-GGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG-VPVYPHYFYSKVREELELMSIDR 201 (334)
T ss_dssp GCCSCEEEEECC-----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCCC-EEEEEEEEEETTTTEEEEEEEEE
T ss_pred HcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccCC-ceeEEEEeecCcCceeeeeeecc
Confidence 46799999998776 899999999999999998876421 145999999997 898876655422 2121111110
Q ss_pred e--EEecCc--------------eEEEEe---CCCCCHHHHHHHHHHHHHHHHHc-----CCceEEEEEEEEeCCCcEEE
Q 013729 89 T--IHKENI--------------CHIVKA---PAAVPWKISELATDVAHKAVSSL-----EGAGIFAVELFWTNNGQILL 144 (437)
Q Consensus 89 ~--~~~~g~--------------~~~~~~---P~~l~~~~~~~i~~~a~~i~~al-----g~~G~~~ve~~~~~dg~~~v 144 (437)
. ...+|. ...... |+.++++..+++.+++.+++++| ++.|++|+||+++++|++|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~~g~~~v 281 (334)
T 2r85_A 202 RYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVV 281 (334)
T ss_dssp EEEEEGGGGGGSCHHHHTTSCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECTTSCEEE
T ss_pred EEEeccCcccccccccccccccCCceeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECCCCCEEE
Confidence 0 000000 012222 88899889999999999999999 88999999999998888999
Q ss_pred EEEcCCCCC
Q 013729 145 NEVAPRPHN 153 (437)
Q Consensus 145 iEiNpR~~~ 153 (437)
+|||||+++
T Consensus 282 iEiN~R~g~ 290 (334)
T 2r85_A 282 FEISARIVA 290 (334)
T ss_dssp EEEECSCCG
T ss_pred EEEeCCcCC
Confidence 999999997
No 70
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.73 E-value=1.7e-17 Score=165.09 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=101.5
Q ss_pred hCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC-----C--CcEEEeeccCCCeEEEEEEEEcC-CCceEEeeee
Q 013729 16 FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF-----D--RGLYVEKWAPFVKELAVIVVRGR-DKSILCYPVV 87 (437)
Q Consensus 16 ~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~-----~--~~~lvEe~I~g~~E~sv~~~~d~-~G~~~~~~~~ 87 (437)
++||+||||..++ +|+|+++++|.+|+.++++.+... . ..++|||||+| .|+++..+... ++++-.+.+.
T Consensus 149 ~~~PvVVK~~~~a-~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~G-~e~s~~~f~~~~~~~~e~~~id 226 (361)
T 2r7k_A 149 IDGTVIVKFPGAR-GGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVG-TNFCIHYFYSPLKDEVELLGMD 226 (361)
T ss_dssp CCSCEEEECSCCC-C---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCCS-EEEEEEEEEETTTTEEEEEEEE
T ss_pred cCCCEEEeeCCCC-CCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccce-EEeeEEEEecccCCeeEEEEec
Confidence 3799999998776 999999999999999998765210 1 35999999997 88886555432 3444333333
Q ss_pred eeEE--ecCce--------------EEEEe---CCCCCHHHHHHHHHHHHHHHHHc------CCceEEEEEEEEeCCCcE
Q 013729 88 ETIH--KENIC--------------HIVKA---PAAVPWKISELATDVAHKAVSSL------EGAGIFAVELFWTNNGQI 142 (437)
Q Consensus 88 e~~~--~~g~~--------------~~~~~---P~~l~~~~~~~i~~~a~~i~~al------g~~G~~~ve~~~~~dg~~ 142 (437)
..+. .+|.+ ..+.. |+.+++++++++.+++.+++++| ++.|++++||++++||++
T Consensus 227 ~r~~~~~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa~l~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~dg~i 306 (361)
T 2r7k_A 227 KRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLEL 306 (361)
T ss_dssp EEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCE
T ss_pred ceEEeecccceecchhhhhcccCCCceEEecCcCCcCCHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcCCCCE
Confidence 2221 11221 13333 88999999999999999999999 889999999999988899
Q ss_pred EEEEEcCCCCC
Q 013729 143 LLNEVAPRPHN 153 (437)
Q Consensus 143 ~viEiNpR~~~ 153 (437)
||+|||||+++
T Consensus 307 ~V~EIapR~gG 317 (361)
T 2r7k_A 307 VVFEMSARVDG 317 (361)
T ss_dssp EEEEEESSBCG
T ss_pred EEEEEcCCCCC
Confidence 99999999996
No 71
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.61 E-value=2.6e-16 Score=153.89 Aligned_cols=131 Identities=17% Similarity=0.150 Sum_probs=87.2
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEc-CCCceEEeeeeeeEE-e
Q 013729 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRG-RDKSILCYPVVETIH-K 92 (437)
Q Consensus 15 ~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d-~~G~~~~~~~~e~~~-~ 92 (437)
+++|||||||..++ ||+|+++++| +|+..+++.+. ..++|||||+| .+++.+++.+ .+|++..+.....+. .
T Consensus 123 ~i~~PviVKp~~g~-ggkG~~~v~~-eel~~~~~~~~---~~~IiEEfI~g-~~~~~~~f~~~~~g~~e~~~~~~r~e~~ 196 (320)
T 2pbz_A 123 KPDELYFVRIEGPR-GGSGHFIVEG-SELEERLSTLE---EPYRVERFIPG-VYLYVHFFYSPILERLELLGVDERVLIA 196 (320)
T ss_dssp CSSCCEEEECC-------------C-EECSCCCC-------CCEEEECCCS-CEEEEEEEEETTTTEEEEEEEEEEEETT
T ss_pred CcCCcEEEEECCCC-CCCCEEEECh-HHHHHHHHhcC---CCEEEEeeece-EecceeEEeccccCceeEEEecceEEEE
Confidence 46999999998777 9999999999 99987664432 34999999997 6667666554 355554444433222 2
Q ss_pred cCceEE-------EEe---CCCCCHHHHHHHHHHHHHHHHHc------CCceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013729 93 ENICHI-------VKA---PAAVPWKISELATDVAHKAVSSL------EGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (437)
Q Consensus 93 ~g~~~~-------~~~---P~~l~~~~~~~i~~~a~~i~~al------g~~G~~~ve~~~~~dg~~~viEiNpR~~~ 153 (437)
+|.+.. ++. |+.+++++++++.+++.+++++| ++.|++++| +++||++||+|||||+++
T Consensus 197 ~g~~~~p~~~~~~~~~G~~P~~~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE--~~~dg~~~v~EIapR~~G 271 (320)
T 2pbz_A 197 DGNARWPVKPLPYTIVGNRAIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH--FAYDGSFKAIGIASRIDG 271 (320)
T ss_dssp CSSSSSCCSCCCCCEEEEEECEECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE--EECSSSCEEEEEESSBCS
T ss_pred CCeeecccCCCceeeecCCCCccCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE--EcCCCcEEEEEecCCCCC
Confidence 333211 222 78888889999999999999999 999999999 577888999999999876
No 72
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.56 E-value=1.3e-15 Score=143.20 Aligned_cols=148 Identities=15% Similarity=0.073 Sum_probs=109.6
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCC-----CCCCcCeEE-eCCHHHHHHHHHHhcCC---------CCcEEEeeccCCC
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRL-----AYDGRGNAV-AKSEEELSSAITALGGF---------DRGLYVEKWAPFV 66 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~-----g~gg~Gv~~-v~~~~el~~~~~~~~~~---------~~~~lvEe~I~g~ 66 (437)
.+++.+|+.++++++|||+||||..+ + +|.|+.+ ++|.+|+.++++.+... ...++||+|++++
T Consensus 41 ~~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~-~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g 119 (238)
T 1wr2_A 41 LAKTLDEALEYAKEIGYPVVLKLMSPQILHKS-DAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLKPG 119 (238)
T ss_dssp EESSHHHHHHHHHHHCSSEEEEEECTTCCCHH-HHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCCCC
T ss_pred EeCCHHHHHHHHHHhCCCEEEEEccCCCCcCC-ccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCCCC
Confidence 35789999999999999999999876 4 5788998 79999999998765321 1469999999977
Q ss_pred eEEEEEEEEcC-CCceEEeeee-eeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEE----------
Q 013729 67 KELAVIVVRGR-DKSILCYPVV-ETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVEL---------- 134 (437)
Q Consensus 67 ~E~sv~~~~d~-~G~~~~~~~~-e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~---------- 134 (437)
+|+++.++.|. .|.++.++.. ..++...+....++| ++++..+++.+.+.++...+|++|...+|+
T Consensus 120 ~E~~v~v~~d~~~g~v~~~~~Gg~~iE~~~d~~~~~~P--l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l 197 (238)
T 1wr2_A 120 REVIIGVTEDPQFGHAIMFGLGGIFVEILKDVTFRLVP--ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKV 197 (238)
T ss_dssp EEEEEEEEEETTTEEEEEEEECSTTHHHHCCCEEEESS--CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHH
T ss_pred eEEEEEEEeCCCCCcEEEEecCCceeeeecceeeecCC--CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Confidence 99999999987 5665555421 111111333444555 999999999999999999999999755442
Q ss_pred ---EEeCCCcEEEEEEcCCCC
Q 013729 135 ---FWTNNGQILLNEVAPRPH 152 (437)
Q Consensus 135 ---~~~~dg~~~viEiNpR~~ 152 (437)
+.+.++.++++||||++-
T Consensus 198 ~~~~~~~~~~~~~lEINPl~~ 218 (238)
T 1wr2_A 198 SKLVDDLKDYIKEMDLNPVFV 218 (238)
T ss_dssp HHHHHHTTTTEEEEEEEEEEE
T ss_pred HHHHHcCCCCeEEEeccCeEE
Confidence 333233399999999975
No 73
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.53 E-value=5e-14 Score=136.83 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=105.1
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeC-CHHHHHHHHHHhcCC-CCcEEEeeccCC--CeEEEEEEEEcCC
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAK-SEEELSSAITALGGF-DRGLYVEKWAPF--VKELAVIVVRGRD 78 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~-~~~el~~~~~~~~~~-~~~~lvEe~I~g--~~E~sv~~~~d~~ 78 (437)
+.+.+++.++++++| |+|+||..++ +|+|+.+++ +.+++.++++.+... ...+++|+||++ +.|+++.++ +
T Consensus 141 ~~~~~~~~~~~~~~~-p~vvKP~~g~-~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~---~ 215 (316)
T 1gsa_A 141 TRNKAQLKAFWEKHS-DIILKPLDGM-GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVV---D 215 (316)
T ss_dssp ESCHHHHHHHHHHHS-SEEEECSSCC-TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEE---T
T ss_pred eCCHHHHHHHHHHcC-CEEEEECCCC-CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEE---C
Confidence 568899999999999 9999998765 999999998 999999888776432 245999999997 467777665 4
Q ss_pred CceEEeeeeeeE----EecCc-eEEEEeCCCCCHHHHHHHHHHHHHHHHH---cCCceEEEEEEEEeCCCcEEEEEEcCC
Q 013729 79 KSILCYPVVETI----HKENI-CHIVKAPAAVPWKISELATDVAHKAVSS---LEGAGIFAVELFWTNNGQILLNEVAPR 150 (437)
Q Consensus 79 G~~~~~~~~e~~----~~~g~-~~~~~~P~~l~~~~~~~i~~~a~~i~~a---lg~~G~~~ve~~~~~dg~~~viEiNpR 150 (437)
|+++.+...... .+.+. ......|..++++ +.+++.+++++ +|+ +.+++||+ |. ||+|||+|
T Consensus 216 g~~~~~~~~r~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~a~~~~~~l~~~g~-~~~~vD~~----g~-~~iEvN~r 285 (316)
T 1gsa_A 216 GEPVPYCLARIPQGGETRGNLAAGGRGEPRPLTES----DWKIARQIGPTLKEKGL-IFVGLDII----GD-RLTEINVT 285 (316)
T ss_dssp TEECSEEEEEECCSSCSCCCGGGTCEEEEEECCHH----HHHHHHHHHHHHHHTTC-CEEEEEEE----TT-EEEEEECS
T ss_pred CEEeeeEEEEeCCCCCceeEEccCCccccCCCCHH----HHHHHHHHHHHHHhCCC-cEEEEEec----CC-EEEEEcCC
Confidence 565432221110 01100 0112245556654 44555555554 576 67889988 54 89999998
Q ss_pred CCCCCCceeeeccccHHHHHHHHHh
Q 013729 151 PHNSGHHTIESCYTSQFEQHMRAVV 175 (437)
Q Consensus 151 ~~~sg~~~~~~~~~~~~~~~~~~a~ 175 (437)
.++........+|+|+.+..++.+.
T Consensus 286 ~~~~~~~~~~~~g~~~~~~~~~~~~ 310 (316)
T 1gsa_A 286 SPTCIREIEAEFPVSITGMLMDAIE 310 (316)
T ss_dssp SCCCHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCcchHHHHHhhCcCHHHHHHHHHH
Confidence 5321222344668888887776654
No 74
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.49 E-value=1.1e-13 Score=135.54 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=96.0
Q ss_pred cCCHHHHHHHHHhh--CCcEEEEecCCCCCC---cCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCC-CeEEEEEEEEc
Q 013729 3 VNDLESARRAGKQF--GYPLMVKSKRLAYDG---RGNAVAKSEEELSSAITALGGFDRGLYVEKWAPF-VKELAVIVVRG 76 (437)
Q Consensus 3 v~s~~e~~~~a~~~--gyPvvvKP~~~g~gg---~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g-~~E~sv~~~~d 76 (437)
+.+.+++.+++++. +||+|+||..++ || +|+.++++.+++.. ....+++|+||++ +.++++.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~P~vvKP~~g~-g~~~s~gv~~v~~~~~l~~-------~~~~~lvqe~i~~~g~~~~v~v~-- 188 (324)
T 1z2n_X 119 VKSKEEVIQLLQSKQLILPFIVKPENAQ-GTFNAHQMKIVLEQEGIDD-------IHFPCLCQHYINHNNKIVKVFCI-- 188 (324)
T ss_dssp ESSHHHHHHHHHTTCSCSSEEEEESBCS-SSSGGGEEEEECSGGGGTT-------CCSSEEEEECCCCTTCEEEEEEE--
T ss_pred eCCHHHHHHHHHHcCCCCCEEEeeCCCC-CCccceeeEEEeCHHHHhh-------cCCCEEEEEccCCCCcEEEEEEE--
Confidence 56788888888875 499999998754 78 99999999988753 1344999999985 578888776
Q ss_pred CCCceEEeeeee--eEEec---------------------------------Cce----E-EEEeCCCCCHHHHHHHHHH
Q 013729 77 RDKSILCYPVVE--TIHKE---------------------------------NIC----H-IVKAPAAVPWKISELATDV 116 (437)
Q Consensus 77 ~~G~~~~~~~~e--~~~~~---------------------------------g~~----~-~~~~P~~l~~~~~~~i~~~ 116 (437)
+|+++...... ++..+ +.. . ....|..++ .+++.++
T Consensus 189 -g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~ 264 (324)
T 1z2n_X 189 -GNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTS---EAEMRDL 264 (324)
T ss_dssp -TTEEEEEEECCCCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTSCC---HHHHHHH
T ss_pred -CCEEEEEEecCcccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCccccCCC---HHHHHHH
Confidence 34443321100 00000 000 0 000122233 1579999
Q ss_pred HHHHHHHcCCceEEEEEEEEe-CCCcEEEEEEcCCCCCCCC
Q 013729 117 AHKAVSSLEGAGIFAVELFWT-NNGQILLNEVAPRPHNSGH 156 (437)
Q Consensus 117 a~~i~~alg~~G~~~ve~~~~-~dg~~~viEiNpR~~~sg~ 156 (437)
+.+++++||+. .+++||+++ ++|++||+|||+||+.++.
T Consensus 265 a~~~~~~lg~~-~~~vD~~~~~~~g~~~vlEvN~~Pg~~~~ 304 (324)
T 1z2n_X 265 AYKVRCALGVQ-LCGIDFIKENEQGNPLVVDVNVFPSYGGK 304 (324)
T ss_dssp HHHHHHHHTCS-EEEEEEECGGGCSSCEEEEEEESCCTTSC
T ss_pred HHHHHHHhCCc-EEeeEEEEEcCCCCEEEEEEcCCCCcCCC
Confidence 99999999996 899999998 4588999999999986543
No 75
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.46 E-value=4.6e-14 Score=152.46 Aligned_cols=164 Identities=16% Similarity=0.087 Sum_probs=111.7
Q ss_pred cCCHHHHHHHH-HhhCCcEEEEecCCCCCCcCeEEeC---CHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCC
Q 013729 3 VNDLESARRAG-KQFGYPLMVKSKRLAYDGRGNAVAK---SEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD 78 (437)
Q Consensus 3 v~s~~e~~~~a-~~~gyPvvvKP~~~g~gg~Gv~~v~---~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~ 78 (437)
+.+.+++.+++ +.+|||+||||..++ +|+||.+++ +.+|+.++++.+......++|||||+| +|+++.++.
T Consensus 505 ~~~~~ea~~~~~~~~g~PvVVKP~~G~-~G~GV~iv~~~~s~eel~~a~~~~~~~~~~vlVEefI~G-~E~~v~Vvg--- 579 (750)
T 3ln6_A 505 FTDRKEALNYFSQIQDKPIVVKPKSTN-FGLGISIFKTSANLASYEKAIDIAFTEDSAILVEEYIEG-TEYRFFVLE--- 579 (750)
T ss_dssp EETTTTHHHHHHHSSSSCEEEEETTCC-SSSSCEEESSCCCHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEET---
T ss_pred ECCHHHHHHHHHHhcCCcEEEEeCCCC-CCCCEEEEeCCCCHHHHHHHHHHHHhhCCcEEEEeccCC-CEEEEEEEC---
Confidence 56777887877 678999999998776 899999999 999999999876444456999999996 999999883
Q ss_pred CceEEeeee--eeEEec----------------------------------------------------Cce--------
Q 013729 79 KSILCYPVV--ETIHKE----------------------------------------------------NIC-------- 96 (437)
Q Consensus 79 G~~~~~~~~--e~~~~~----------------------------------------------------g~~-------- 96 (437)
|+++..-.. .++..+ |..
T Consensus 580 g~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~N 659 (750)
T 3ln6_A 580 GDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSN 659 (750)
T ss_dssp TEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCC
T ss_pred CEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEEeeccc
Confidence 344211000 000000 000
Q ss_pred --E-EEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC--------CCcEEEEEEcCCCCCCCCc-eeeeccc
Q 013729 97 --H-IVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN--------NGQILLNEVAPRPHNSGHH-TIESCYT 164 (437)
Q Consensus 97 --~-~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~--------dg~~~viEiNpR~~~sg~~-~~~~~~~ 164 (437)
. +...+ .++++-.++.+++.++++++|+. +++||++.++ .|.++|+|||++|+-.+|. .....+.
T Consensus 660 ls~Gg~~~d--~td~i~p~~~~~a~~aa~~igl~-~~GvDli~~di~~~~~~~~~~~~iiEvN~~pg~~~h~~p~~g~~~ 736 (750)
T 3ln6_A 660 ISTGGDSID--VTNTMDPTYKQLAAEMAEAMGAW-VCGVDLIIPNATQAYSKDKKNATCIELNFNPLMYMHTYCQEGPGQ 736 (750)
T ss_dssp TTTTCEEEE--CTTTSCHHHHHHHHHHHHHHTCS-SCEEEEEESCSSSCCCTTTTCCEEEEEESSCCCHHHHSCSBSCCC
T ss_pred ccCCCceee--ccccCCHHHHHHHHHHHHHhCCC-eEEEEEEecCccccccccCCCeEEEEEcCCcchhhhcCcccCCCC
Confidence 0 00011 23334456888999999999985 8999999874 3467899999999854442 2344556
Q ss_pred cHHHHHHHHH
Q 013729 165 SQFEQHMRAV 174 (437)
Q Consensus 165 ~~~~~~~~~a 174 (437)
+.-+..++.+
T Consensus 737 ~v~~~ii~~l 746 (750)
T 3ln6_A 737 SITPRILAKL 746 (750)
T ss_dssp CCHHHHHHHH
T ss_pred cHHHHHHHHh
Confidence 6666555543
No 76
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.43 E-value=2.7e-13 Score=146.15 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=109.9
Q ss_pred ccCCHHHHHHHH-HhhCCcEEEEecCCCCCCcCeEEe----CCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEc
Q 013729 2 EVNDLESARRAG-KQFGYPLMVKSKRLAYDGRGNAVA----KSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRG 76 (437)
Q Consensus 2 ~v~s~~e~~~~a-~~~gyPvvvKP~~~g~gg~Gv~~v----~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d 76 (437)
.+.+.+++.+++ +++|||+||||..++ +|+||.++ ++.+|+.++++.+...+..++|||||+| +|++|.++
T Consensus 509 ~~~~~~ea~~~~~~~~g~PvVVKP~~g~-~G~GV~iv~~~v~~~eel~~al~~a~~~~~~vlVEefI~G-~Ei~v~Vl-- 584 (757)
T 3ln7_A 509 EFTSLEKAVASYALFENRAVVIKPKSTN-YGLGITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLVG-TEYRFFVL-- 584 (757)
T ss_dssp EESCHHHHHHGGGGSSSSCEEEEESSCS-TTTTCEECSSCCCCHHHHHHHHHHHHHHCSSEEEEECCCS-EEEEEEEE--
T ss_pred EECCHHHHHHHHHHhcCCCEEEEeCCCC-CCCCeEEecCCCCCHHHHHHHHHHHHhcCCcEEEEEcCCC-cEEEEEEE--
Confidence 357888887777 789999999998776 89999999 8999999998866433445999999997 99999988
Q ss_pred CCCceEEeeee--eeEEe----------------------------------------------------cCce------
Q 013729 77 RDKSILCYPVV--ETIHK----------------------------------------------------ENIC------ 96 (437)
Q Consensus 77 ~~G~~~~~~~~--e~~~~----------------------------------------------------~g~~------ 96 (437)
+|+++..-.. .++.- .|..
T Consensus 585 -ggkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~ 663 (757)
T 3ln7_A 585 -GDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRAN 663 (757)
T ss_dssp -TTEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSS
T ss_pred -CCEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEeecc
Confidence 3454321100 00000 0000
Q ss_pred ----EE-EEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC--------CCcEEEEEEcCCCCCCCCce-eeec
Q 013729 97 ----HI-VKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN--------NGQILLNEVAPRPHNSGHHT-IESC 162 (437)
Q Consensus 97 ----~~-~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~--------dg~~~viEiNpR~~~sg~~~-~~~~ 162 (437)
.+ ... ..++++-.++.+++.++++++|+. +++||++.++ ++.+.|+|||.+|+-.+|.. ....
T Consensus 664 ~Nls~GG~~~--dvtd~i~p~~~~~a~~aa~~lGl~-~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~~~h~~p~~g~ 740 (757)
T 3ln7_A 664 SNISTGGDSI--DMTDEMHESYKQLAVGITKAMGAA-VCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMMMHIFPYAGK 740 (757)
T ss_dssp CCGGGTCCEE--ECTTTSCHHHHHHHHHHHHHHTCS-EEEEEEEESCSSSCCCSSTTTCEEEEEESSCCHHHHHSCSSSC
T ss_pred cccccCccce--eccccCCHHHHHHHHHHHHHhCCC-EEEEEEEecCccccccccCCCeEEEEEcCCcchhhhhccccCC
Confidence 00 001 123334456788899999999984 9999999872 24578999999998322321 2234
Q ss_pred cccHHHHHHHHH
Q 013729 163 YTSQFEQHMRAV 174 (437)
Q Consensus 163 ~~~~~~~~~~~a 174 (437)
+.+.-+..++.+
T Consensus 741 ~~~v~~~ii~~l 752 (757)
T 3ln7_A 741 SRRLTQNVIKML 752 (757)
T ss_dssp CCCCHHHHHHHH
T ss_pred CCchHHHHHHHh
Confidence 455555555443
No 77
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.39 E-value=1e-12 Score=127.56 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=96.1
Q ss_pred HHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeeee--
Q 013729 11 RAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE-- 88 (437)
Q Consensus 11 ~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~e-- 88 (437)
++++.+|||+|+||..++ .|+||.+++|.+++++.++.+......+++||||+.++++.+.++ +|++..+-...
T Consensus 146 ~~~~~~g~PvVvK~~~Gs-~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~~g~DiRv~Vv---Gg~v~a~~Rr~~~ 221 (309)
T 1i7n_A 146 EMLTLPTFPVVVKIGHAH-SGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKI---GNNYKAYMRTSIS 221 (309)
T ss_dssp GGSSCCCSSEEEEESSCS-TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCCEEEEEEEEEE---TTEEEEEEEESSC
T ss_pred hhhhccCCCEEEEeCCCC-ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecCCCceEEEEEE---CCEEEEEEEEcCC
Confidence 345668999999998765 999999999999999888754322233889999996688888887 45664332210
Q ss_pred -eEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcC--CCCC
Q 013729 89 -TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAP--RPHN 153 (437)
Q Consensus 89 -~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNp--R~~~ 153 (437)
++. .+.......+.+++++ .++++.++++++|.-++++||++.+++|++||+|||. .|+-
T Consensus 222 g~wr-tN~~~~~~e~~~l~~e----~~~la~~A~~a~gGldi~GVDll~~~~g~~~V~EVN~~~~P~~ 284 (309)
T 1i7n_A 222 GNWK-TNTGSAMLEQIAMSDR----YKLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLI 284 (309)
T ss_dssp TTTS-CSCCCSSEEEECCCHH----HHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCC
T ss_pred CCCe-ecCCcceeeecCCCHH----HHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEECCCCCCCc
Confidence 111 1111111224456664 7788999999995458999999999889899999999 7764
No 78
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.36 E-value=4.3e-12 Score=124.61 Aligned_cols=153 Identities=13% Similarity=0.110 Sum_probs=105.1
Q ss_pred HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeee---e
Q 013729 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV---E 88 (437)
Q Consensus 12 ~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~---e 88 (437)
+.+.+|||+|+||..++ .|+||.+++|.+++++.++.+......+++||||+.++++.+.++ +|++..+-.. .
T Consensus 164 ~~~~~g~PvVvK~~~Gs-~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~~g~DiRv~VV---Gg~vva~~R~~~~g 239 (344)
T 2p0a_A 164 MVTAPHFPVVVKLGHAH-AGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKI---GSNYKAYMRTSISG 239 (344)
T ss_dssp CCCCSSSSEEEEESSCC-TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCCEEEEEEEEEE---TTEEEEEEEEESSS
T ss_pred hhhccCCCEEEEeCCCC-ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccCCCccEEEEEE---CCEEEEEEEecCCC
Confidence 45568999999998765 999999999999999877654211233889999996688888887 4566543221 1
Q ss_pred eEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcC--CCCCCCCceeeeccccH
Q 013729 89 TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAP--RPHNSGHHTIESCYTSQ 166 (437)
Q Consensus 89 ~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNp--R~~~sg~~~~~~~~~~~ 166 (437)
++ +.+.......+.+++++ .++++.++++++|.-++++||++.+++|++||+|||. .|+-.++ ...++.+.
T Consensus 240 ~w-rtN~~~~~~e~~~l~~e----~~~la~~Aa~a~gGldi~GVDll~~~~G~~~VlEVN~~~~P~~~~~--~~~~~~~I 312 (344)
T 2p0a_A 240 NW-KANTGSAMLEQVAMTER----YRLWVDSCSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEH--VEEDRQLM 312 (344)
T ss_dssp CS-STTSSSEEEEEECCCHH----HHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCGGG--HHHHHHHH
T ss_pred CC-eecCCceEEEeeCCCHH----HHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEEcCCCCCcccch--hhhHHHHH
Confidence 11 11111233345556765 6788999999995458999999999899899999999 6652111 12334566
Q ss_pred HHHHHHHHh
Q 013729 167 FEQHMRAVV 175 (437)
Q Consensus 167 ~~~~~~~a~ 175 (437)
.+..++.+.
T Consensus 313 a~~ii~~i~ 321 (344)
T 2p0a_A 313 ADLVVSKMS 321 (344)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666653
No 79
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.36 E-value=4.6e-12 Score=126.67 Aligned_cols=133 Identities=16% Similarity=0.137 Sum_probs=97.0
Q ss_pred HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCceEEeeee---e
Q 013729 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV---E 88 (437)
Q Consensus 12 ~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~d~~G~~~~~~~~---e 88 (437)
+++.+|||+|+||..++ .|+||.+++|.+++++.++.+......+++||||+.++++.+.++ +|+++.+-.. .
T Consensus 259 ~i~~~g~PvVvKp~~GS-~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~~g~DIRv~VV---Gg~vva~~Rr~~~g 334 (422)
T 1pk8_A 259 MLSSTTYPVVVKMGHAH-SGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKI---GQNYKAYMRTSVSG 334 (422)
T ss_dssp CCCCSSSSEEEEESSCC-TTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCCEEEEEEEEEE---TTEEEEEEEEESSS
T ss_pred hhhccCCCEEEEeCCCC-ceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecCCCceEEEEEE---CCEEEEEEEEcCCC
Confidence 44568999999997765 999999999999999888754322234899999996688888887 4566533221 1
Q ss_pred eEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcC--CCCC
Q 013729 89 TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAP--RPHN 153 (437)
Q Consensus 89 ~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNp--R~~~ 153 (437)
++ +.+.......+..++++ .++++.+++++++.-++++||++.+++|++||+|||. .++-
T Consensus 335 ~W-rtNvg~g~~e~i~lt~e----~~elA~kAaka~gGldiaGVDlL~s~dG~~~VlEVN~s~~P~~ 396 (422)
T 1pk8_A 335 NW-KTNTGSAMLEQIAMSDR----YKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLI 396 (422)
T ss_dssp CS-STTSSCEEEEEECCCHH----HHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCC
T ss_pred Cc-eeccCceeeeeeCCCHH----HHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEECCCCCCCc
Confidence 11 11221233345556765 7789999999994348999999999889899999999 7663
No 80
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=99.29 E-value=3.2e-13 Score=116.61 Aligned_cols=120 Identities=14% Similarity=0.024 Sum_probs=96.1
Q ss_pred EEEcCCHHHHHHHHHHhhcc-CCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 240 TIVGSSMGLVESRLNSLLKE-DSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 240 i~~G~s~~eA~~k~~~a~~~-i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
|++|.|++||+.|++.+.+. ++ +++ | +++.++.||+.+.+.++.|.++||++.+| .+ |.+++
T Consensus 1 mg~~~~~~~A~~Ka~~aag~~lP------~~g-v-liSv~d~dK~~l~~~a~~l~~lGf~i~AT----~G----Ta~~L- 63 (143)
T 2yvq_A 1 GSSGSSGHTAFLKAMLSTGFKIP------QKG-I-LIGIQQSFRPRFLGVAEQLHNEGFKLFAT----EA----TSDWL- 63 (143)
T ss_dssp ----CCCCHHHHHHHTSCSCCCC------CSE-E-EEECCGGGHHHHHHHHHHHHTTTCEEEEE----HH----HHHHH-
T ss_pred CCCcCCHHHHHHHHHHhcCCCCC------CCC-E-EEEecccchHHHHHHHHHHHHCCCEEEEC----ch----HHHHH-
Confidence 67899999999999988863 32 445 5 89999999999999999999999999999 45 78888
Q ss_pred hhhhcCCeEEEEec---ccc----ccccCcccCCCCCCEEeccCCC--CCCCChhhHHHhhhCCCCCceEE
Q 013729 319 SAHERGIEIIIAGA---GGA----AHLPGMVAARTPLPVIGVPVRA--SALDGLDSLLSIVQMPRGVPVAT 380 (437)
Q Consensus 319 ~~~~~g~~v~i~~a---g~~----~~l~~~i~~~~~~pVi~~p~~~--~~~~g~~~l~~~~~~~~gvp~~t 380 (437)
++.|++|..+.. |+. +++.++|+.+....|||+|.+. ...||.. +|+.++..||||+|
T Consensus 64 --~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~--iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 64 --NANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNTKFVHDNYV--IRRTAVDSGIPLLT 130 (143)
T ss_dssp --HHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCGGGHHHHHH--HHHHHHHTTCCEEC
T ss_pred --HHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCCcCCccHHH--HHHHHHHhCCCeEc
Confidence 567999998876 325 7999999999999999999752 1234444 89999999999995
No 81
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.24 E-value=5.4e-11 Score=117.65 Aligned_cols=136 Identities=15% Similarity=0.210 Sum_probs=91.1
Q ss_pred HHHHHHHH--hhCCcEEEEecCC-CCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CCeEEEEEEEEcCCCceE
Q 013729 7 ESARRAGK--QFGYPLMVKSKRL-AYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRGRDKSIL 82 (437)
Q Consensus 7 ~e~~~~a~--~~gyPvvvKP~~~-g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~-g~~E~sv~~~~d~~G~~~ 82 (437)
+++.+.++ .+|||+|+||..+ |+.|.||.++++.++|..+ ..+ ++|||||+ ++.++.|.++. ++++
T Consensus 150 ~~~~~~~~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~-----~~~--~lvQefI~~~G~dirv~VvG---~~v~ 219 (346)
T 2q7d_A 150 DDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI-----QPP--CVVQNFINHNAVLYKVFVVG---ESYT 219 (346)
T ss_dssp TTHHHHHHHTTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC-------CC--EEEEECCCCTTEEEEEEEET---TEEE
T ss_pred HHHHHHHHhcCCCCCEEEEecCCCcceeeeeEEecCHHHHHhc-----CCC--EEEEEeeCCCCeEEEEEEEC---CEEE
Confidence 44555543 5789999999763 3237899999999998753 234 99999998 35999999883 3443
Q ss_pred Eeeee--eeEE-----------e------cCceEEEEeC-------CCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEE
Q 013729 83 CYPVV--ETIH-----------K------ENICHIVKAP-------AAVPWKISELATDVAHKAVSSLEGAGIFAVELFW 136 (437)
Q Consensus 83 ~~~~~--e~~~-----------~------~g~~~~~~~P-------~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~ 136 (437)
.+... .++. . .|. .....| +.+++ .++++++|.++.++||+. .+++|+++
T Consensus 220 ~~~r~sl~~~~~~~~~~~~~~f~s~~~~~~g~-~~~~~~~~~~~~~~~~~~--~~el~~lA~~a~~alGl~-~~gvDii~ 295 (346)
T 2q7d_A 220 VVQRPSLKNFSAGTSDRESIFFNSHNVSKPES-SSVLTELDKIEGVFERPS--DEVIRELSRALRQALGVS-LFGIDIII 295 (346)
T ss_dssp EEEEECCCCCC----CCCCEEEEGGGTSSTTC-CCGGGCCSCCCSCCCCCC--HHHHHHHHHHHHHHHCCC-EEEEEEEE
T ss_pred EEEEecCCCcCcCccccccccccceeeccCCc-cccccccccccccccCCC--hHHHHHHHHHHHHHhCCc-eEeeEEEe
Confidence 32110 0000 0 011 000111 22333 467999999999999998 55899999
Q ss_pred eC-CCcEEEEEEcCCCCCCCC
Q 013729 137 TN-NGQILLNEVAPRPHNSGH 156 (437)
Q Consensus 137 ~~-dg~~~viEiNpR~~~sg~ 156 (437)
++ +|.+||+|||+-||-++.
T Consensus 296 ~~~~g~~~VlEVN~~PG~~g~ 316 (346)
T 2q7d_A 296 NNQTGQHAVIDINAFPGYEGV 316 (346)
T ss_dssp CTTTCCEEEEEEEESCCCTTC
T ss_pred ecCCCCEEEEEEeCCcccccc
Confidence 86 578999999998875544
No 82
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.1e-11 Score=99.45 Aligned_cols=72 Identities=28% Similarity=0.441 Sum_probs=60.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc-----CC-CCcEEEeeccCCCeEEEEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG-----GF-DRGLYVEKWAPFVKELAVIVV 74 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~-----~~-~~~~lvEe~I~g~~E~sv~~~ 74 (437)
.+.+.+++.++++++|||+|+||..++ +|+|+.+++|.+|+.++++.+. .. ...++||+||+|.+|+++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~P~vvKp~~~~-~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 30 VVKDAEEAVRIAREIGYPVMIKASAGG-GGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp CBSSHHHHHHHHHHHCSSEEEEETTSC-CTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSSSCCCSCCC
T ss_pred ccCCHHHHHHHHHhcCCCEEEEECCCC-CCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCCcEEEEEec
Confidence 467899999999999999999998776 8999999999999999987642 11 245999999998669887653
No 83
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=99.13 E-value=6.5e-11 Score=118.63 Aligned_cols=141 Identities=21% Similarity=0.221 Sum_probs=96.0
Q ss_pred ccCCHHHHHHHHHhhCCc-EEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcCC-------------CCcEEEeecc
Q 013729 2 EVNDLESARRAGKQFGYP-LMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF-------------DRGLYVEKWA 63 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyP-vvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~~-------------~~~~lvEe~I 63 (437)
.++|.+|+.++++++||| +||||.... ||+ ||.+++|++|+.++++.+... ...++||+|+
T Consensus 24 ~~~s~eea~~aa~~lG~P~vVvK~~~~~-ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v 102 (388)
T 2nu8_B 24 ACTTPREAEEAASKIGAGPWVVKCQVHA-GGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAAT 102 (388)
T ss_dssp EESSHHHHHHHHHHHCSSCEEEEECCSS-SCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECC
T ss_pred EECCHHHHHHHHHHhCCCeEEEEEecCC-CCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEcc
Confidence 367899999999999999 999997642 334 999999999999999876431 1369999999
Q ss_pred CCCeEEEEEEEEcCC-C-ceEEeeee-----eeEEe---cCceEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceE---
Q 013729 64 PFVKELAVIVVRGRD-K-SILCYPVV-----ETIHK---ENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGI--- 129 (437)
Q Consensus 64 ~g~~E~sv~~~~d~~-G-~~~~~~~~-----e~~~~---~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~alg~~G~--- 129 (437)
++++|+++.+++|.. | .++.++.. |.+.. +......+.|.. +++... +++++.||+.+.
T Consensus 103 ~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~~gl~~~~a-------~~~~~~lG~~~~~~~ 175 (388)
T 2nu8_B 103 DIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQG-------RELAFKLGLEGKLVQ 175 (388)
T ss_dssp CEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTTTBCCHHHH-------HHHHHHTTCCTHHHH
T ss_pred ccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCCCCCCHHHH-------HHHHHHcCCCHHHHH
Confidence 966999999999876 3 55666522 22211 122333456753 777643 334444565541
Q ss_pred ------EEE-EEEEeCCCcEEEEEEcCCCC
Q 013729 130 ------FAV-ELFWTNNGQILLNEVAPRPH 152 (437)
Q Consensus 130 ------~~v-e~~~~~dg~~~viEiNpR~~ 152 (437)
.++ +++.+ . +++.+||||+.-
T Consensus 176 ~~~~~l~~l~~~~~~-~-d~~~lEINPl~~ 203 (388)
T 2nu8_B 176 QFTKIFMGLATIFLE-R-DLALIEINPLVI 203 (388)
T ss_dssp HHHHHHHHHHHHHHH-T-TEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHh-C-CEEEEEecceEE
Confidence 111 22233 3 599999999975
No 84
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=98.99 E-value=5.5e-10 Score=112.04 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=94.7
Q ss_pred ccCCHHHHHHHHHhhCC-cEEEEecC--CCCCCcC---------eEEeCCHHHHHHHHHHhcCC-------------CCc
Q 013729 2 EVNDLESARRAGKQFGY-PLMVKSKR--LAYDGRG---------NAVAKSEEELSSAITALGGF-------------DRG 56 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gy-PvvvKP~~--~g~gg~G---------v~~v~~~~el~~~~~~~~~~-------------~~~ 56 (437)
.+.|.+|+.++++++|| |+||||.. +| .|+| |.+++|++|+.++++.+... ...
T Consensus 24 ~~~s~~ea~~~a~~lg~~PvVvK~~i~~GG-rGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~ 102 (395)
T 2fp4_B 24 VADTANEALEAAKRLNAKEIVLKAQILAGG-RGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNK 102 (395)
T ss_dssp EESSHHHHHHHHHHHTCSSEEEEECCSSSC-GGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCC
T ss_pred EECCHHHHHHHHHHcCCCcEEEEEeeccCC-CccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccce
Confidence 36799999999999999 89999963 33 3444 99999999999999876321 135
Q ss_pred EEEeeccCCCeEEEEEEEEcCC-C-ceEEeeee--eeEEe----cCceEEEEe--CC-CCCHHHHHHHHHHHHHHHHHcC
Q 013729 57 LYVEKWAPFVKELAVIVVRGRD-K-SILCYPVV--ETIHK----ENICHIVKA--PA-AVPWKISELATDVAHKAVSSLE 125 (437)
Q Consensus 57 ~lvEe~I~g~~E~sv~~~~d~~-G-~~~~~~~~--e~~~~----~g~~~~~~~--P~-~l~~~~~~~i~~~a~~i~~alg 125 (437)
++||+|++.++|+.+.++.|.. | .++.+... .+++. ..+.....+ |. ++++. .++++++.||
T Consensus 103 vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~~l~~~-------~a~~l~~~lg 175 (395)
T 2fp4_B 103 VMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDS-------QAQRMAENLG 175 (395)
T ss_dssp EEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTTCCCHH-------HHHHHHHHTT
T ss_pred EEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCCCCCHH-------HHHHHHHHhC
Confidence 9999999977999999999875 2 44444421 11211 123233332 33 36663 4566667777
Q ss_pred CceEEEEE----------EEEeCCCcEEEEEEcCCCC
Q 013729 126 GAGIFAVE----------LFWTNNGQILLNEVAPRPH 152 (437)
Q Consensus 126 ~~G~~~ve----------~~~~~dg~~~viEiNpR~~ 152 (437)
+.|...-+ ++.+ . +++++||||+.-
T Consensus 176 ~~~~~~~~~~~~l~~l~~l~~~-~-d~~~lEINPl~~ 210 (395)
T 2fp4_B 176 FLGPLQNQAADQIKKLYNLFLK-I-DATQVEVNPFGE 210 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-T-TEEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHhhh-C-CeEEEEeeeEEE
Confidence 76532221 2223 3 599999999975
No 85
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=98.77 E-value=1.3e-09 Score=93.79 Aligned_cols=111 Identities=14% Similarity=0.047 Sum_probs=89.6
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec---cccccccCcc
Q 013729 268 ILPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA---GGAAHLPGMV 342 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a---g~~~~l~~~i 342 (437)
..++| +++..|+||+.+.+.++.+.++ ||++.+| .+ |.+++++ ..|++|..+.+ |+.+++.++|
T Consensus 10 ~~g~V-~lsv~D~dK~~~v~~ak~~~~ll~Gf~l~AT----~g----Ta~~L~e--~~Gl~v~~v~k~~eGG~p~I~d~I 78 (152)
T 1b93_A 10 ARKHI-ALVAHDHCKQMLMSWVERHQPLLEQHVLYAT----GT----TGNLISR--ATGMNVNAMLSGPMGGDQQVGALI 78 (152)
T ss_dssp SSCEE-EEEECGGGHHHHHHHHHHTHHHHTTSEEEEE----TT----HHHHHHH--HHCCCCEEECCGGGTHHHHHHHHH
T ss_pred CCCEE-EEEEehhhHHHHHHHHHHHHHHhCCCEEEEc----cH----HHHHHHH--HhCceeEEEEecCCCCCchHHHHH
Confidence 45777 8889999999999999999999 9999999 66 8899852 27999998876 3667999999
Q ss_pred cCCCCCCEEeccC--CCC--CCCChhhHHHhhhCCCCCceEE-EEeCCcchHHHHHH
Q 013729 343 AARTPLPVIGVPV--RAS--ALDGLDSLLSIVQMPRGVPVAT-VAINNATNAGLLAV 394 (437)
Q Consensus 343 ~~~~~~pVi~~p~--~~~--~~~g~~~l~~~~~~~~gvp~~t-v~~~~~~~aa~~a~ 394 (437)
+.+....|||+|. ... ..||.. +++.+.-.+|||+| ++ ++.|++.|+
T Consensus 79 ~~geIdlVInt~~pl~~~~h~~D~~~--IrR~A~~~~IP~~T~la---tA~a~v~ai 130 (152)
T 1b93_A 79 SEGKIDVLIFFWDPLNAVPHDPDVKA--LLRLATVWNIPVATNVA---TADFIIQSP 130 (152)
T ss_dssp HTTCCCEEEEECCTTSCCTTHHHHHH--HHHHHHHTTCCEESSHH---HHHHHHTSG
T ss_pred HCCCccEEEEcCCcccCCcccccHHH--HHHHHHHcCCCEEeCHH---HHHHHHHHH
Confidence 9999999999997 322 245555 89999999999994 43 445544443
No 86
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=98.72 E-value=1.6e-09 Score=95.06 Aligned_cols=110 Identities=13% Similarity=0.044 Sum_probs=89.9
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec---cccccccCcc
Q 013729 268 ILPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA---GGAAHLPGMV 342 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a---g~~~~l~~~i 342 (437)
..++| +++..|+||+.+.+.++.+.++ ||++.+| .+ |.+++++ ..|++|..+.+ |+.+++.++|
T Consensus 26 ~~g~V-~lsv~D~dK~~lv~~ak~~~~lL~Gf~L~AT----~g----Ta~~L~e--~~Gl~v~~v~k~~eGG~pqI~d~I 94 (178)
T 1vmd_A 26 KKKRI-ALIAHDRRKRDLLEWVSFNLGTLSKHELYAT----GT----TGALLQE--KLGLKVHRLKSGPLGGDQQIGAMI 94 (178)
T ss_dssp SSCEE-EEEECGGGHHHHHHHHHHSHHHHTTSEEEEC----HH----HHHHHHH--HHCCCCEECSCGGGTHHHHHHHHH
T ss_pred CCCEE-EEEEehhhHHHHHHHHHHHHHHhcCCEEEEc----hH----HHHHHHH--HhCceeEEEeecCCCCCchHHHHH
Confidence 45777 8889999999999999999999 9999999 45 8999852 27999988866 3667999999
Q ss_pred cCCCCCCEEeccC--C-CC-CCCChhhHHHhhhCCCCCceEE-EEeCCcchHHHHH
Q 013729 343 AARTPLPVIGVPV--R-AS-ALDGLDSLLSIVQMPRGVPVAT-VAINNATNAGLLA 393 (437)
Q Consensus 343 ~~~~~~pVi~~p~--~-~~-~~~g~~~l~~~~~~~~gvp~~t-v~~~~~~~aa~~a 393 (437)
+.+....|||+|. . .. ..||.. +++.+.-.+|||+| ++ ++.|++.|
T Consensus 95 ~~geIdlVInt~dPl~~~~h~~D~~~--IRR~A~~~~IP~~Tnla---tA~A~v~a 145 (178)
T 1vmd_A 95 AEGKIDVLIFFWDPLEPQAHDVDVKA--LIRIATVYNIPVAITRS---TADFLISS 145 (178)
T ss_dssp HTTSCCEEEEECCSSSCCTTSCCHHH--HHHHHHHTTCCEESSHH---HHHHHHHS
T ss_pred HCCCccEEEEccCccCCCcccccHHH--HHHHHHHcCCCEEeCHH---HHHHHHHH
Confidence 9999999999997 3 22 467777 99999999999994 43 44555544
No 87
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=98.62 E-value=2.8e-09 Score=89.89 Aligned_cols=108 Identities=19% Similarity=0.110 Sum_probs=89.4
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec---cccccccCcccCC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA---GGAAHLPGMVAAR 345 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a---g~~~~l~~~i~~~ 345 (437)
+++ ++..|+||+.+.+.++.+.++ ||++.+| .+ |.+++++ ..|++|..+.+ |+.+++.++|+.+
T Consensus 5 ~ia-lsv~D~dK~~~v~~a~~~~~ll~Gf~l~AT----~g----Ta~~L~e--~~Gl~v~~v~k~~~eG~p~I~d~I~~g 73 (134)
T 2xw6_A 5 ALA-LIAHDAKKEEMVAFCQRHREVLARFPLVAT----GT----TGRRIEE--ATGLTVEKLLSGPLGGDQQMGARVAEG 73 (134)
T ss_dssp EEE-EEECGGGHHHHHHHHHHTHHHHTTSCEEEC----HH----HHHHHHH--HHCCCCEECSCGGGTHHHHHHHHHHTT
T ss_pred EEE-EEEecccHHHHHHHHHHHHHHhCCCEEEEc----cH----HHHHHHH--hhCceEEEEEecCCCCcchHHHHHHCC
Confidence 453 467999999999999999999 9999999 45 8899852 26999988866 5678999999999
Q ss_pred CCCCEEeccC--C-CC-CCCChhhHHHhhhCCCCCceE-EEEeCCcchHHHHHH
Q 013729 346 TPLPVIGVPV--R-AS-ALDGLDSLLSIVQMPRGVPVA-TVAINNATNAGLLAV 394 (437)
Q Consensus 346 ~~~pVi~~p~--~-~~-~~~g~~~l~~~~~~~~gvp~~-tv~~~~~~~aa~~a~ 394 (437)
....|||+|. . .. ..||.. +++.+.-.+|||+ |++ ++.|++.++
T Consensus 74 eIdlVInt~~pl~~~~h~~D~~~--IrR~A~~~~IP~~T~la---tA~a~v~al 122 (134)
T 2xw6_A 74 RILAVIFFRDPLTAQPHEPDVQA--LLRVCDVHGVPLATNPM---AAEALIPWL 122 (134)
T ss_dssp CEEEEEEECCTTTCCTTSCCSHH--HHHHHHHHTCCEECSHH---HHHHHHHHH
T ss_pred CccEEEEccCcccCCCccchHHH--HHHHHHHcCCCeEcCHH---HHHHHHHHH
Confidence 9999999997 3 22 467777 9999999999999 443 677777776
No 88
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=98.43 E-value=1.9e-07 Score=88.81 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=78.7
Q ss_pred HhhCCcEEEEecCCC----------CCCcCe----EEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CCeEEEEEEEEcCC
Q 013729 14 KQFGYPLMVKSKRLA----------YDGRGN----AVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRGRD 78 (437)
Q Consensus 14 ~~~gyPvvvKP~~~g----------~gg~Gv----~~v~~~~el~~~~~~~~~~~~~~lvEe~I~-g~~E~sv~~~~d~~ 78 (437)
+.+++|+|+||..+. +.|-|. .++.|.+...+.- ......+.+++||||+ .++.+.+.++.
T Consensus 142 ~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~-~~vr~~~~~i~QEFI~~~G~DIRv~vVG--- 217 (330)
T 3t7a_A 142 EVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPE-SNVRKTGSYIYEEFMPTDGTDVKVYTVG--- 217 (330)
T ss_dssp EEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESC-CSCCSSSCEEEEECCCCSSEEEEEEEES---
T ss_pred ccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChh-hhhccCCcEEEEeccCCCCceEEEEEEC---
Confidence 457899999997642 012233 4455433210000 0112234599999997 35899998883
Q ss_pred CceEEeeee------eeEEecCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCcEEEEEEcCCCC
Q 013729 79 KSILCYPVV------ETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (437)
Q Consensus 79 G~~~~~~~~------e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~alg~~G~~~ve~~~~~dg~~~viEiNpR~~ 152 (437)
|+++..-.+ ..+..+-.....-.|..|+++ .+++|.++++++|. +++++|++.++ +..||+|+|.++-
T Consensus 218 ~~vv~Am~R~sp~~~G~~r~N~~gG~~~~~v~Lt~e----ek~iA~kaa~a~G~-~v~GVDlLrs~-~~~~V~EVNg~~f 291 (330)
T 3t7a_A 218 PDYAHAEARKSPALDGKVERDSEGKEVRYPVILNAR----EKLIAWKVCLAFKQ-TVCGFDLLRAN-GQSYVCDVNGFSF 291 (330)
T ss_dssp TTCEEEEEEECTTSSCBCCBCTTSCBCCEECCCCHH----HHHHHHHHHHHTTB-SEEEEEEEEET-TEEEEEEEEESCC
T ss_pred CEEEEEEEEeCCCCCCcEEEcCCCCceeeeecCCHH----HHHHHHHHHHHhCC-ceEEEEEEEEC-CccEEEEeCCCcc
Confidence 344321111 111111111111246678875 57899999999997 69999999885 4589999999986
Q ss_pred C
Q 013729 153 N 153 (437)
Q Consensus 153 ~ 153 (437)
-
T Consensus 292 v 292 (330)
T 3t7a_A 292 V 292 (330)
T ss_dssp C
T ss_pred c
Confidence 4
No 89
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=98.39 E-value=9.3e-07 Score=88.65 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=64.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEE
Q 013729 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAV 71 (437)
Q Consensus 2 ~v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~E~sv 71 (437)
.++|.+|+.++++++|||+||||.... +|+ ||.+++|++|+.++++.+... .+.++||+|+++++|+.+
T Consensus 24 ~~~s~eea~~aa~~lG~PvVvKa~~~~-ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~~g~El~v 102 (397)
T 3ufx_B 24 VAYTPEEAKRIAEEFGKRVVIKAQVHV-GGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVDIAKEYYA 102 (397)
T ss_dssp EESSHHHHHHHHHHHTSCEEEEECCSS-SCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEECCCEEEEEEE
T ss_pred EECCHHHHHHHHHHcCCCEEEEEcccc-CCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEEeecCCeeEEE
Confidence 367999999999999999999997632 444 999999999999999887532 245999999996699999
Q ss_pred EEEEcCC
Q 013729 72 IVVRGRD 78 (437)
Q Consensus 72 ~~~~d~~ 78 (437)
.+..|..
T Consensus 103 gv~~D~~ 109 (397)
T 3ufx_B 103 GLILDRA 109 (397)
T ss_dssp EEEEETT
T ss_pred EEEecCC
Confidence 9999875
No 90
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.18 E-value=2.6e-05 Score=77.21 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=85.6
Q ss_pred CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-------CCe--EEEEEEEEcCCCceEEe---
Q 013729 17 GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-------FVK--ELAVIVVRGRDKSILCY--- 84 (437)
Q Consensus 17 gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~-------g~~--E~sv~~~~d~~G~~~~~--- 84 (437)
+.+.|+||..++ .|+|++++++.+++.+.++.. . ..++||+||+ +++ ++.+-++....-.++.|
T Consensus 147 ~~~wI~KP~~~s-rG~GI~l~~~~~~i~~~~~~~-~--~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~vy~y~~g 222 (380)
T 3tig_A 147 GNVWIAKSSSGA-KGEGILISSDATELLDFIDNQ-G--QVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYNIYLYREG 222 (380)
T ss_dssp CCCEEEEESCC-----CCBCCSCSHHHHHHHHHH-T--SCEEEEECCSSBCCBTTTTBCEEEEEEEEECTTCCEEECSCC
T ss_pred CCeEEEeCCccC-CCCCEEEeCCHHHHHHHHhcc-C--CcEEEEecccCceeecCCCceeEEEEEEEEcCCCEEEEEcCC
Confidence 689999997765 899999999999998876542 2 3499999996 334 44444444321122211
Q ss_pred ----eee-----------eeEEecC---ceEEEEe---------------------CCCCCHHHHHHHHHHHHHHHHH--
Q 013729 85 ----PVV-----------ETIHKEN---ICHIVKA---------------------PAAVPWKISELATDVAHKAVSS-- 123 (437)
Q Consensus 85 ----~~~-----------e~~~~~g---~~~~~~~---------------------P~~l~~~~~~~i~~~a~~i~~a-- 123 (437)
... .|+.... .....+. .....+.+..+|+++....+.+
T Consensus 223 ~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~ 302 (380)
T 3tig_A 223 VLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLE 302 (380)
T ss_dssp EEEECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 100 0000000 0000000 0001134556677766665543
Q ss_pred --c-----CC--ceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeeccccHHHHHHHHHhCC
Q 013729 124 --L-----EG--AGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGL 177 (437)
Q Consensus 124 --l-----g~--~G~~~ve~~~~~dg~~~viEiNpR~~~sg~~~~~~~~~~~~~~~~~~a~G~ 177 (437)
+ .. ..++++||++|++.++|++|||..|+-... .--++++..++.+.+-
T Consensus 303 ~~i~~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~~q~-----~i~~l~~~~~~iavdp 360 (380)
T 3tig_A 303 PAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQK-----LYAELCKGIVDLAISS 360 (380)
T ss_dssp HHHCCTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCCCTT-----THHHHHHHHHHHTTTT
T ss_pred HHhhhcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCccHH-----hHHHHHHHHHHHhccc
Confidence 2 12 268999999999999999999999984211 2235677777776653
No 91
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=96.79 E-value=0.0037 Score=62.78 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHhhC-CcEEEEecCCCCCC----cCeEEeCCHHHHHHHHHHhcCC----------CCcEEEeeccCC--C
Q 013729 4 NDLESARRAGKQFG-YPLMVKSKRLAYDG----RGNAVAKSEEELSSAITALGGF----------DRGLYVEKWAPF--V 66 (437)
Q Consensus 4 ~s~~e~~~~a~~~g-yPvvvKP~~~g~gg----~Gv~~v~~~~el~~~~~~~~~~----------~~~~lvEe~I~g--~ 66 (437)
+|.+|+.++++.+| ||+|+|+.... || -||.+..|.+|+.+++...... -..++||+.++. .
T Consensus 38 ~~~~eA~~~a~~lg~~pvVvKaqv~~-ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~ 116 (425)
T 3mwd_A 38 TDWARLLQDHPWLLSQNLVVKPDQLI-KRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQA 116 (425)
T ss_dssp CCHHHHHHHCGGGGTSCEEEEECSSC-SCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGG
T ss_pred CCHHHHHHHHHHhCCCCEEEEecccc-CCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCC
Confidence 57799999999999 99999995521 22 3899999999999988765321 135999999974 4
Q ss_pred eEEEEEEEEcCCCceEEee
Q 013729 67 KELAVIVVRGRDKSILCYP 85 (437)
Q Consensus 67 ~E~sv~~~~d~~G~~~~~~ 85 (437)
+|+-+.+..|..|.++.++
T Consensus 117 ~E~ylgi~~Dr~gpvI~~s 135 (425)
T 3mwd_A 117 EEFYVCIYATREGDYVLFH 135 (425)
T ss_dssp GEEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEEecCCCCEEEEE
Confidence 8999999999887665553
No 92
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=95.82 E-value=0.017 Score=62.47 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHhhC-CcEEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcCC----------CCcEEEeeccCC--C
Q 013729 4 NDLESARRAGKQFG-YPLMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF----------DRGLYVEKWAPF--V 66 (437)
Q Consensus 4 ~s~~e~~~~a~~~g-yPvvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~~----------~~~~lvEe~I~g--~ 66 (437)
++.+|+.++++.+| ||+|||+... .||| ||.+..|.+|+++++..+... -..++||++++. .
T Consensus 38 ~~~~eA~~aa~~lg~~pvVvKaQv~-~GgRGKaGGVkL~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~ 116 (829)
T 3pff_A 38 TDWARLLQDHPWLLSQNLVVKPDQL-IKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQA 116 (829)
T ss_dssp CCHHHHHHHCTHHHHSCEEEEECSS-CSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGG
T ss_pred CCHHHHHHHHHHhCCCCEEEEeccc-ccCCCcCCeEEEECCHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCc
Confidence 46789999999998 9999999653 2343 789999999999988765321 135899999974 4
Q ss_pred eEEEEEEEEcCCCceEEee
Q 013729 67 KELAVIVVRGRDKSILCYP 85 (437)
Q Consensus 67 ~E~sv~~~~d~~G~~~~~~ 85 (437)
+|+-+.+..|..|.++.+.
T Consensus 117 ~ElYvgI~~Dr~gpvIm~s 135 (829)
T 3pff_A 117 EEFYVCIYATREGDYVLFH 135 (829)
T ss_dssp GEEEEEEEEETTEEEEEEE
T ss_pred cEEEEEEEecCCCCEEEEE
Confidence 8999999999887665554
No 93
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=93.61 E-value=0.046 Score=54.30 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=61.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 348 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 348 (437)
.++.||++.........++.+.|++ |+.+.......+-+.+.+.+..+.+++.+++++|++.||+ -.++.+++-....
T Consensus 53 ~r~liVtd~~~~~~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~~~~ 131 (387)
T 3uhj_A 53 KRALVLIDRVLFDALSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAIDTGA 131 (387)
T ss_dssp SEEEEEECTTTHHHHHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CEEEEEECchHHHHHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHhcCC
Confidence 4666787666555566777888888 9987445556677777788888888888999999998876 4788888777889
Q ss_pred CEEeccCC
Q 013729 349 PVIGVPVR 356 (437)
Q Consensus 349 pVi~~p~~ 356 (437)
|+|.+|+.
T Consensus 132 p~i~IPTT 139 (387)
T 3uhj_A 132 RIVIAPTI 139 (387)
T ss_dssp EEEECCSS
T ss_pred CEEEecCc
Confidence 99999985
No 94
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=92.29 E-value=0.056 Score=53.25 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=64.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 348 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 348 (437)
.++.||++..........+.+.|++.|+++...+.+.+-+.+.+.+..+.+++.+++++|++.||+ -.+.++++-....
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~ 111 (370)
T 1jq5_A 32 NKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADELDA 111 (370)
T ss_dssp SEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHTC
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCC
Confidence 467677755444445677778888889887544444455555667777777888999999988765 5888888877789
Q ss_pred CEEeccCC
Q 013729 349 PVIGVPVR 356 (437)
Q Consensus 349 pVi~~p~~ 356 (437)
|+|.+|+.
T Consensus 112 p~i~IPTT 119 (370)
T 1jq5_A 112 YIVIVPTA 119 (370)
T ss_dssp EEEEEESS
T ss_pred CEEEeccc
Confidence 99999985
No 95
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=91.37 E-value=0.13 Score=50.35 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=65.5
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCCCC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPLP 349 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~p 349 (437)
++.+|++....+....++.+.|++.|+++..-.-..+.+.+.+.+. +.+++.+++++|++.||+ -++.++++-....|
T Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA~~~~~p 114 (354)
T 3ce9_A 36 RVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMAFLRKLP 114 (354)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHHHHHTCC
T ss_pred eEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHHhhcCCC
Confidence 6767776555455677788888888988754331357788888888 888888999999988765 58888888778899
Q ss_pred EEeccCC
Q 013729 350 VIGVPVR 356 (437)
Q Consensus 350 Vi~~p~~ 356 (437)
+|.+|+.
T Consensus 115 ~i~IPTT 121 (354)
T 3ce9_A 115 FISVPTS 121 (354)
T ss_dssp EEEEESC
T ss_pred EEEecCc
Confidence 9999985
No 96
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=91.35 E-value=1.9 Score=38.16 Aligned_cols=128 Identities=12% Similarity=0.156 Sum_probs=75.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCC
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLP 349 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~p 349 (437)
.++.+++.. ......+.+...+++.+++.. .++.++..+..+++ +.|++|+|...|.+ .+|..++..|
T Consensus 5 ~~I~~iapy---~~l~~~~~~i~~e~~~~i~i~----~~~l~~~v~~a~~~-~~~~dVIISRGgta----~~lr~~~~iP 72 (196)
T 2q5c_A 5 LKIALISQN---ENLLNLFPKLALEKNFIPITK----TASLTRASKIAFGL-QDEVDAIISRGATS----DYIKKSVSIP 72 (196)
T ss_dssp CEEEEEESC---HHHHHHHHHHHHHHTCEEEEE----ECCHHHHHHHHHHH-TTTCSEEEEEHHHH----HHHHTTCSSC
T ss_pred CcEEEEEcc---HHHHHHHHHHHhhhCCceEEE----ECCHHHHHHHHHHh-cCCCeEEEECChHH----HHHHHhCCCC
Confidence 355455532 222223334445666655544 45567677777777 78999888765433 3456677899
Q ss_pred EEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHccC--------ChHHHHHHHHHHH
Q 013729 350 VIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFG--------DADLRARMQQYME 413 (437)
Q Consensus 350 Vi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~~--------~~~~~~~~~~~~~ 413 (437)
||.+|.+. .|=+.+|...-+... .++.|+-.|....+-.-.++|++. ..++.+.+++.+.
T Consensus 73 VV~I~~s~--~Dil~al~~a~~~~~--kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~ 140 (196)
T 2q5c_A 73 SISIKVTR--FDTMRAVYNAKRFGN--ELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKT 140 (196)
T ss_dssp EEEECCCH--HHHHHHHHHHGGGCS--EEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHH
T ss_pred EEEEcCCH--hHHHHHHHHHHhhCC--cEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHH
Confidence 99999862 233333333333333 466666667766666677777753 3466666665554
No 97
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=90.95 E-value=0.47 Score=46.93 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=66.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChhHHHHhHhhhhhcCC---eEEEEecccc-ccccCcc
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 342 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~hr~p~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 342 (437)
.++.||+..........++.+.|++.|+++..-+.. .+.+.+.+.+..+.+.+.|+ +++|+..||+ -.+++++
T Consensus 63 ~rvlIVtd~~v~~~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~ 142 (390)
T 3okf_A 63 QKVVIVTNHTVAPLYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFA 142 (390)
T ss_dssp CEEEEEEETTTHHHHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHH
T ss_pred CEEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHH
Confidence 467788877666667888889999999987654432 34567777777778888888 5888887764 5888888
Q ss_pred c--CCCCCCEEeccCC
Q 013729 343 A--ARTPLPVIGVPVR 356 (437)
Q Consensus 343 ~--~~~~~pVi~~p~~ 356 (437)
| -..-.|+|.+|+.
T Consensus 143 Aa~~~rgip~I~IPTT 158 (390)
T 3okf_A 143 AACYQRGVDFIQIPTT 158 (390)
T ss_dssp HHHBTTCCEEEEEECS
T ss_pred HHHhcCCCCEEEeCCC
Confidence 6 4677899999995
No 98
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=90.69 E-value=0.14 Score=51.78 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=63.6
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCCCC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPLP 349 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~p 349 (437)
++.||++..........+.+.|++.|+.+...+.+.+-+-+.+.+..+.+++ +.+++|++.||+ -.+.++++-....|
T Consensus 93 rvlIVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~~giP 171 (450)
T 1ta9_A 93 SAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHSMNLP 171 (450)
T ss_dssp EEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHHTTCC
T ss_pred EEEEEECccHHHHHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHhcCCC
Confidence 6767776544444577778888889998754455555555567777777777 899999988765 58888888777899
Q ss_pred EEeccCC
Q 013729 350 VIGVPVR 356 (437)
Q Consensus 350 Vi~~p~~ 356 (437)
+|.+|+.
T Consensus 172 ~I~IPTT 178 (450)
T 1ta9_A 172 SIICPTT 178 (450)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 9999985
No 99
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=90.50 E-value=0.16 Score=50.19 Aligned_cols=86 Identities=9% Similarity=0.084 Sum_probs=61.7
Q ss_pred eEEEEEccCCCHH---HHHHHHHHHHHcCCcEEE-EEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCC
Q 013729 271 RIGIIMGSDSDLP---VMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAAR 345 (437)
Q Consensus 271 ~V~ii~gs~sD~~---~~~~~~~~L~~~G~~~~~-~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~ 345 (437)
++.||++...... ...++.+.|++.|+++.. .-...+.+.+.+.+..+.+++.+++++|++.||+ -.++.+++..
T Consensus 35 ~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 35 KALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIA 114 (387)
T ss_dssp EEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH
T ss_pred EEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHH
Confidence 5667776554444 688889999999988632 2134566777788888888899999999988765 3566665542
Q ss_pred ------------------CCCCEEeccCC
Q 013729 346 ------------------TPLPVIGVPVR 356 (437)
Q Consensus 346 ------------------~~~pVi~~p~~ 356 (437)
...|+|.+|+.
T Consensus 115 ~~~~~~~~d~~~~~~~~~~~~p~i~IPTT 143 (387)
T 3bfj_A 115 ATHEGDLYQYAGIETLTNPLPPIVAVNTT 143 (387)
T ss_dssp HHSSSCSGGGCBSSCCCSCCCCEEEEECS
T ss_pred HhCCCCHHHHhcccccCCCCCCEEEEeCC
Confidence 47899999985
No 100
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=90.21 E-value=0.36 Score=47.41 Aligned_cols=87 Identities=20% Similarity=0.309 Sum_probs=63.1
Q ss_pred CeEEEEEccCCCHH--HHHHHHHHHHHcCCcEEE-EEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCC
Q 013729 270 PRIGIIMGSDSDLP--VMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAAR 345 (437)
Q Consensus 270 ~~V~ii~gs~sD~~--~~~~~~~~L~~~G~~~~~-~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~ 345 (437)
.++.||++..+-.. ...++.+.|++.|+.+.. .-...+.+.+.+.+..+.+++.+++++|++.||+ -.++.+++..
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVL 120 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHH
Confidence 46767776533332 678888899999987532 2245677888888888888888999999988765 3566665543
Q ss_pred ------------------CCCCEEeccCC
Q 013729 346 ------------------TPLPVIGVPVR 356 (437)
Q Consensus 346 ------------------~~~pVi~~p~~ 356 (437)
...|+|.+|+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 149 (371)
T 1o2d_A 121 LKEKDLSVEDLYDREKVKHWLPVVEIPTT 149 (371)
T ss_dssp TTSTTCCSGGGGCGGGCCCCCCEEEEECS
T ss_pred HhCCCCCHHHHhcccCCCCCCeEEEEeCC
Confidence 56899999985
No 101
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=89.74 E-value=0.25 Score=48.86 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=62.1
Q ss_pred CeEEEEEccCCCH-HHHHHHHHHHHHcCCcEEE-EEecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccCCC
Q 013729 270 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAART 346 (437)
Q Consensus 270 ~~V~ii~gs~sD~-~~~~~~~~~L~~~G~~~~~-~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~ 346 (437)
.++.||++..... ....++.+.|++.|+.+.. .-+..+-+.+.+.+..+.+++.+++++|++.||+. .+..+++...
T Consensus 32 ~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 32 KNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVA 111 (383)
T ss_dssp CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred CEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 4676777543211 1467788889999988632 23456888888888888888899999999887763 5555554433
Q ss_pred ------------------CCCEEeccCC
Q 013729 347 ------------------PLPVIGVPVR 356 (437)
Q Consensus 347 ------------------~~pVi~~p~~ 356 (437)
..|+|.+|+.
T Consensus 112 ~~~~~~~d~~~~~~~~~~~~p~i~IPTT 139 (383)
T 3ox4_A 112 TNGGEVKDYEGIDKSKKPALPLMSINTT 139 (383)
T ss_dssp HSCSSGGGGCEESCCSSCCSCEEEEECS
T ss_pred hCCCCHHHHhcccccccCCCCEEEEeCC
Confidence 7899999985
No 102
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=88.97 E-value=0.12 Score=50.70 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=61.4
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCCCC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPLP 349 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~p 349 (437)
++.||++.. ......++.+.|++.++.+.-.+ ..+.+.+.+.+..+.+++.+++++|++.||+ -.+..+++.....|
T Consensus 36 r~liVtd~~-~~~~~~~v~~~L~~~~~~v~~~v-~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~~p 113 (353)
T 3hl0_A 36 RALVLSTPQ-QKGDAEALASRLGRLAAGVFSEA-AMHTPVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALRTDAA 113 (353)
T ss_dssp CEEEECCGG-GHHHHHHHHHHHGGGEEEEECCC-CTTCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHCCE
T ss_pred EEEEEecCc-hhhHHHHHHHHHhhCCcEEecCc-CCCCcHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhccCCC
Confidence 565676543 24556777778887665433222 2355667777777788888999999988876 47888888889999
Q ss_pred EEeccCCC
Q 013729 350 VIGVPVRA 357 (437)
Q Consensus 350 Vi~~p~~~ 357 (437)
+|.+|+..
T Consensus 114 ~i~IPTTa 121 (353)
T 3hl0_A 114 QIVIPTTY 121 (353)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCc
Confidence 99999853
No 103
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=88.94 E-value=0.32 Score=48.25 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=62.5
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHc------CCcEEEEEecC---CCChhHHHHhHhhhhhcC--C---eEEEEecccc
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMF------SVPHEVRIVSA---HRTPDLMFSYASSAHERG--I---EIIIAGAGGA 335 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~------G~~~~~~v~s~---hr~p~~~~~~~~~~~~~g--~---~v~i~~ag~~ 335 (437)
.++.||+...........+.+.|+.. |+.+...++.. +.+.+.+.+..+.+.+.| + +++|+..||+
T Consensus 37 ~k~liVtd~~v~~~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGs 116 (393)
T 1sg6_A 37 TTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGV 116 (393)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHH
T ss_pred CeEEEEECCcHHHHHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEEEECCcH
Confidence 36667765432223566677778776 88876444444 666677788888888888 8 8999887765
Q ss_pred -ccccCccc--CCCCCCEEeccCC
Q 013729 336 -AHLPGMVA--ARTPLPVIGVPVR 356 (437)
Q Consensus 336 -~~l~~~i~--~~~~~pVi~~p~~ 356 (437)
-.+.++++ -..-.|+|.+|+.
T Consensus 117 v~D~ak~~Aa~~~rgip~i~IPTT 140 (393)
T 1sg6_A 117 IGDLTGFVASTYMRGVRYVQVPTT 140 (393)
T ss_dssp HHHHHHHHHHHGGGCCEEEEEECS
T ss_pred HHHHHHHHHHHhcCCCCEEEECCc
Confidence 68999988 3567899999995
No 104
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=87.79 E-value=0.15 Score=49.97 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=60.4
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCCCC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPLP 349 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~p 349 (437)
++.||++... .....++.+.|++.++.+.-. ...+.+.+.+.+..+.+++.+++++|++.||+ -.+..+++.....|
T Consensus 38 r~liVtd~~~-~~~~~~v~~~L~~~~~~~f~~-v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~~~~p 115 (358)
T 3jzd_A 38 RALVLCTPNQ-QAEAERIADLLGPLSAGVYAG-AVMHVPIESARDATARAREAGADCAVAVGGGSTTGLGKAIALETGMP 115 (358)
T ss_dssp CEEEECCGGG-HHHHHHHHHHHGGGEEEEECC-CCTTCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHCCC
T ss_pred eEEEEeCCcH-HHHHHHHHHHhccCCEEEecC-CcCCCCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhccCCC
Confidence 5656765442 455677777787765433222 23455667777777778888999999988876 47888888888999
Q ss_pred EEeccCC
Q 013729 350 VIGVPVR 356 (437)
Q Consensus 350 Vi~~p~~ 356 (437)
+|.+|+.
T Consensus 116 ~i~IPTT 122 (358)
T 3jzd_A 116 IVAIPTT 122 (358)
T ss_dssp EEEEECS
T ss_pred EEEEeCC
Confidence 9999985
No 105
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=86.58 E-value=0.57 Score=46.60 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=58.4
Q ss_pred eEEEEEccCCCHH--HHHHHHHHHHHcCCcEEEEEe--cCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccCC
Q 013729 271 RIGIIMGSDSDLP--VMKDAAKILTMFSVPHEVRIV--SAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAAR 345 (437)
Q Consensus 271 ~V~ii~gs~sD~~--~~~~~~~~L~~~G~~~~~~v~--s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~ 345 (437)
++.||++..+-.. ....+.+.|++.|+.+.. +. ..+-+.+.+.+..+.+++.+++++|++.||+. .++.+++..
T Consensus 45 r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~-f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~ 123 (407)
T 1vlj_A 45 KVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVE-VSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAG 123 (407)
T ss_dssp EEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEE-ECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH
T ss_pred eEEEEECchHHhhccHHHHHHHHHHHcCCeEEE-ecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHH
Confidence 5667765332222 577888889988987642 21 23566677777788888899999999887653 555555442
Q ss_pred ------------------CCCCEEeccCC
Q 013729 346 ------------------TPLPVIGVPVR 356 (437)
Q Consensus 346 ------------------~~~pVi~~p~~ 356 (437)
...|+|.+|+.
T Consensus 124 ~~~~~~~~d~~~~~~~~~~~~p~i~IPTT 152 (407)
T 1vlj_A 124 ALYEGDIWDAFIGKYQIEKALPIFDVLTI 152 (407)
T ss_dssp TTCSSCGGGGGGTSCCCCCCCCEEEEECS
T ss_pred HhCCCCHHHHhcccccCCCCCCEEEEeCC
Confidence 57899999985
No 106
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=86.03 E-value=0.27 Score=48.59 Aligned_cols=86 Identities=13% Similarity=0.198 Sum_probs=59.0
Q ss_pred eEEEEEccCCCH-HHHHHHHHHHHHcCCcEEE-EEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccC---
Q 013729 271 RIGIIMGSDSDL-PVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAA--- 344 (437)
Q Consensus 271 ~V~ii~gs~sD~-~~~~~~~~~L~~~G~~~~~-~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~--- 344 (437)
++.||++..... ....++.+.|++.|+.+.. .-...+.+.+.+.+..+.+++.+++++|++.||+ -.++.+++.
T Consensus 33 ~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~ 112 (386)
T 1rrm_A 33 KALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISN 112 (386)
T ss_dssp EEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHH
T ss_pred EEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHh
Confidence 565666432212 2577788888888987642 2134566777788888888888999999988765 355555543
Q ss_pred -----------------CCCCCEEeccCC
Q 013729 345 -----------------RTPLPVIGVPVR 356 (437)
Q Consensus 345 -----------------~~~~pVi~~p~~ 356 (437)
....|+|.+|+.
T Consensus 113 ~~~~~~~~d~~~~~~~~~~~~p~i~IPTT 141 (386)
T 1rrm_A 113 NPEFADVRSLEGLSPTNKPSVPILAIPTT 141 (386)
T ss_dssp CGGGTTSGGGSEECCCCSCCSCEEEEECS
T ss_pred CCCCCCHHHHhcccccCCCCCCEEEEeCC
Confidence 236899999985
No 107
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=85.09 E-value=14 Score=33.39 Aligned_cols=113 Identities=15% Similarity=0.238 Sum_probs=67.4
Q ss_pred HHHHHHcCCcEEEEEecCCCChhHHHHhHhhh-hhcCCeEEEEeccccccccCcccCCCCCCEEeccCCCCCCCChhhHH
Q 013729 289 AKILTMFSVPHEVRIVSAHRTPDLMFSYASSA-HERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLL 367 (437)
Q Consensus 289 ~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~-~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~ 367 (437)
.+...+++...+..++ .++.++.....++. ...|++|+|...|.+ .+|..++..|||.+|.+ |+| ++
T Consensus 29 ~~i~~e~~~~~~I~vi--~~~le~av~~a~~~~~~~~~dVIISRGgta----~~Lr~~~~iPVV~I~vs-----~~D-il 96 (225)
T 2pju_A 29 RDISLEFDHLANITPI--QLGFEKAVTYIRKKLANERCDAIIAAGSNG----AYLKSRLSVPVILIKPS-----GYD-VL 96 (225)
T ss_dssp HHHHTTTTTTCEEEEE--CCCHHHHHHHHHHHTTTSCCSEEEEEHHHH----HHHHTTCSSCEEEECCC-----HHH-HH
T ss_pred HHHHHhhCCCceEEEe--cCcHHHHHHHHHHHHhcCCCeEEEeCChHH----HHHHhhCCCCEEEecCC-----HHH-HH
Confidence 3444556666666654 34555555555443 335789888765433 34566778999999986 344 44
Q ss_pred HhhhCCC--CCceEEEEeCCcchHHHHHHHHHccC--------ChHHHHHHHHHHH
Q 013729 368 SIVQMPR--GVPVATVAINNATNAGLLAVRMLGFG--------DADLRARMQQYME 413 (437)
Q Consensus 368 ~~~~~~~--gvp~~tv~~~~~~~aa~~a~~~l~~~--------~~~~~~~~~~~~~ 413 (437)
+.++... +-.++.|+-.|....+-.-.++|++. ..++.+.+++.+.
T Consensus 97 ~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~ 152 (225)
T 2pju_A 97 QFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKA 152 (225)
T ss_dssp HHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHH
Confidence 4444422 22466666667777777777788864 3455555555444
No 108
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=81.86 E-value=1.6 Score=44.22 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEe--CCHHHHHHHHHHhcCCCCcEEEeeccCC
Q 013729 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVA--KSEEELSSAITALGGFDRGLYVEKWAPF 65 (437)
Q Consensus 3 v~s~~e~~~~a~~~gyPvvvKP~~~g~gg~Gv~~v--~~~~el~~~~~~~~~~~~~~lvEe~I~g 65 (437)
+.+.++...+.+++. -+|+||..+ +||.||.+= -+.++.+++.+++...+..+++|++++-
T Consensus 349 c~~~~~~~~vl~~l~-~lViKp~~g-~gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~l 411 (474)
T 3n6x_A 349 LSKADDLKYVLDNLA-ELVVKEVQG-SGGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLAL 411 (474)
T ss_dssp TTSHHHHHHHHHSGG-GEEEEECCC-E-----EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCC
T ss_pred cCCHHHHHHHHhchh-heEEEecCC-CCCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCC
Confidence 356777777877766 699999775 489999773 4678888877777666667999999985
No 109
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=81.78 E-value=1.1 Score=43.91 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=60.3
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChhHHHHhHhhhhhcCC---eEEEEecccc-ccccCcc
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 342 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~hr~p~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 342 (437)
.++.||++.... +...++.+.|++.|+++...+.. .+.+.+.+.+..+.+.+.|+ +++|+..||+ -.+.+++
T Consensus 44 ~rvlIVtd~~v~-~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~ 122 (368)
T 3qbe_A 44 HKVAVVHQPGLA-ETAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFA 122 (368)
T ss_dssp SEEEEEECGGGH-HHHHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHH
T ss_pred CEEEEEECccHH-HHHHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHH
Confidence 467677765543 34778888999999987654432 23455666666666666554 7888888765 5888888
Q ss_pred c--CCCCCCEEeccCC
Q 013729 343 A--ARTPLPVIGVPVR 356 (437)
Q Consensus 343 ~--~~~~~pVi~~p~~ 356 (437)
+ -..-.|+|.+|+.
T Consensus 123 Aa~~~rgip~i~IPTT 138 (368)
T 3qbe_A 123 AATWLRGVSIVHLPTT 138 (368)
T ss_dssp HHHGGGCCEEEEEECS
T ss_pred HHHhccCCcEEEECCC
Confidence 7 3467899999985
No 110
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A*
Probab=79.57 E-value=0.89 Score=46.68 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=42.0
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
++++ +||.++ |+.+.+.++.|.++||++.+| .+ |++++ ++.|++|..+..
T Consensus 5 ~G~a-LISV~D--K~~iv~lAk~L~~lGf~I~AT----gG----TAk~L---~e~GI~v~~V~k 54 (593)
T 1g8m_A 5 QQLA-LLSVSE--KAGLVEFARSLNALGLGLIAS----GG----TATAL---RDAGLPVRDVSD 54 (593)
T ss_dssp CCEE-EEEESC--CTTHHHHHHHHHHTTCEEEEC----HH----HHHHH---HHTTCCCEEHHH
T ss_pred CCEE-EEEEeC--cHhHHHHHHHHHHCCCEEEEc----hH----HHHHH---HHCCCeEEEeec
Confidence 4666 887765 899999999999999999988 66 89999 677999987743
No 111
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=78.81 E-value=1.2 Score=43.44 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=53.2
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe---cCCCChhHHHHhHhhhhhcCC---eEEEEecccc-ccccCccc
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV---SAHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMVA 343 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~---s~hr~p~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i~ 343 (437)
++.||+...........+.+.| +.| .++..+. ..+.+.+.+.+..+.+++.|+ +++|+..||+ -.+.++++
T Consensus 33 ~~liVtd~~~~~~~~~~v~~~L-~~g-~~~~~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA 110 (354)
T 1xah_A 33 QSFLLIDEYVNQYFANKFDDIL-SYE-NVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVA 110 (354)
T ss_dssp CEEEEEEHHHHHHHHHHHC--------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHH
T ss_pred eEEEEECCcHHHHHHHHHHHHH-hcC-CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHH
Confidence 4556764332222455556666 667 5554333 235577777777888888898 7999887765 58888887
Q ss_pred --CCCCCCEEeccCC
Q 013729 344 --ARTPLPVIGVPVR 356 (437)
Q Consensus 344 --~~~~~pVi~~p~~ 356 (437)
-....|+|.+|+.
T Consensus 111 ~~~~rgip~i~IPTT 125 (354)
T 1xah_A 111 ATLLRGVHFIQVPTT 125 (354)
T ss_dssp HHBTTCCEEEEEECS
T ss_pred HHhccCCCEEEECCc
Confidence 4678899999995
No 112
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=78.47 E-value=1.1 Score=44.61 Aligned_cols=84 Identities=17% Similarity=0.245 Sum_probs=53.0
Q ss_pred CeEEEEEccCCCHH--HHHHHHHHHHHcCCcEEEEE--ecCCCChhHHHHhHhhhhhcCCeEEEEeccccc-cccCcccC
Q 013729 270 PRIGIIMGSDSDLP--VMKDAAKILTMFSVPHEVRI--VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA 344 (437)
Q Consensus 270 ~~V~ii~gs~sD~~--~~~~~~~~L~~~G~~~~~~v--~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~ 344 (437)
.++.||++..+-.. ...++.+.|+ |+++. .+ ...+.+.+.+.+..+.+++.+++++|++.||+. .++.+++.
T Consensus 51 ~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~-~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~ 127 (408)
T 1oj7_A 51 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVL-EFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAA 127 (408)
T ss_dssp CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEE-EECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHH
T ss_pred CEEEEEECCchhhhccHHHHHHHHhC--CCEEE-EeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHH
Confidence 36667764332222 4566666665 76643 12 123556677777777788889999999887653 55555543
Q ss_pred C---------------------CCCCEEeccCC
Q 013729 345 R---------------------TPLPVIGVPVR 356 (437)
Q Consensus 345 ~---------------------~~~pVi~~p~~ 356 (437)
. ...|+|.+|+.
T Consensus 128 ~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTT 160 (408)
T 1oj7_A 128 AANYPENIDPWHILQTGGKEIKSAIPMGCVLTL 160 (408)
T ss_dssp HTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESS
T ss_pred HHhCCCCCCHHHHhccccCcCCCCCCEEEEeCC
Confidence 1 45899999985
No 113
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=77.82 E-value=3.7 Score=40.10 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=60.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe---cCCCChhHHHHhHhhhhhcC---CeEEEEecccc-ccccCcc
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV---SAHRTPDLMFSYASSAHERG---IEIIIAGAGGA-AHLPGMV 342 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~---s~hr~p~~~~~~~~~~~~~g---~~v~i~~ag~~-~~l~~~i 342 (437)
.++.||+...........+.+.|+.. +.++..+. -.+.+.+.+.+..+.+.+.| .+++|+..||+ -.+.+++
T Consensus 35 ~k~liVtd~~v~~~~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~ 113 (368)
T 2gru_A 35 DQYIMISDSGVPDSIVHYAAEYFGKL-APVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVA 113 (368)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHTTT-SCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHH
T ss_pred CEEEEEECCcHHHHHHHHHHHHHHhc-cceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHH
Confidence 46778887666655677778888766 66644332 23456666666666667777 57888887664 6888888
Q ss_pred cC--CCCCCEEeccCC
Q 013729 343 AA--RTPLPVIGVPVR 356 (437)
Q Consensus 343 ~~--~~~~pVi~~p~~ 356 (437)
+. ..-.|+|.+|+.
T Consensus 114 Aa~~~rgip~i~IPTT 129 (368)
T 2gru_A 114 AGMMFRGIALIHVPTT 129 (368)
T ss_dssp HHHBTTCCEEEEEECS
T ss_pred HHHhcCCCCEEEECCc
Confidence 73 567899999994
No 114
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=77.30 E-value=4.9 Score=33.09 Aligned_cols=60 Identities=7% Similarity=0.030 Sum_probs=47.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
-.|.|+..++...+.++++.+.|+..|+.+++... |+-+.+-.-+++++..+++..+++.
T Consensus 9 ~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~---r~~e~Lg~kIR~a~~~kvPy~lVVG 68 (130)
T 1v95_A 9 VDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFL---NTEVSLSQALEDVSRGGSPFAIVIT 68 (130)
T ss_dssp CTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEEC---TTSSCHHHHHHHHHHHTCSEEEEEC
T ss_pred CeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecC---CCCCcHHHHHHHHHHcCCCEEEEEe
Confidence 34668888999999999999999999999999831 2234477778888889999776664
No 115
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=77.15 E-value=1.3 Score=45.01 Aligned_cols=49 Identities=20% Similarity=0.185 Sum_probs=40.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
.++ +||. +||..+.+.++.|.++||++.+| .+ |++++ ++.|++|..+..
T Consensus 25 ~ra-LISV--~DK~glv~~Ak~L~~lGfeI~AT----gG----Tak~L---~e~GI~v~~V~k 73 (534)
T 4ehi_A 25 MRA-LLSV--SDKEGIVEFGKELENLGFEILST----GG----TFKLL---KENGIKVIEVSD 73 (534)
T ss_dssp CEE-EEEE--SSCTTHHHHHHHHHHTTCEEEEC----HH----HHHHH---HHTTCCCEECBC
T ss_pred cEE-EEEE--cccccHHHHHHHHHHCCCEEEEc----cH----HHHHH---HHCCCceeehhh
Confidence 344 7777 57899999999999999999888 66 89999 677999887744
No 116
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=76.98 E-value=1.4 Score=42.85 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=53.2
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe--cCCCChhHHHHhHhhhhhcCC---eEEEEecccc-ccccCcccC
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV--SAHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMVAA 344 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~--s~hr~p~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i~~ 344 (437)
++.||++..... ...++.+.|+ .++ +..+- ..+.+.+.+.+..+.+.+.|+ +++|+..||+ -.+.++++.
T Consensus 30 kvliVtd~~v~~-~~~~v~~~L~-~~~--~~~~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~ 105 (348)
T 1ujn_A 30 PAALLFDRRVEG-FAQEVAKALG-VRH--LLGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAA 105 (348)
T ss_dssp CEEEEEEGGGHH-HHHHHHHHHT-CCC--EEEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHH
T ss_pred EEEEEECCcHHH-HHHHHHHHhc-cCe--EEEECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHH
Confidence 566777654434 5666666666 444 32222 234555667777666677676 6888877664 588888873
Q ss_pred --CCCCCEEeccCC
Q 013729 345 --RTPLPVIGVPVR 356 (437)
Q Consensus 345 --~~~~pVi~~p~~ 356 (437)
..-.|+|.+|+.
T Consensus 106 ~~~rgip~i~IPTT 119 (348)
T 1ujn_A 106 TYLRGVAYLAFPTT 119 (348)
T ss_dssp HBTTCCEEEEEECS
T ss_pred HhccCCCEEEecCc
Confidence 567899999985
No 117
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=71.38 E-value=1.8 Score=43.78 Aligned_cols=47 Identities=17% Similarity=0.056 Sum_probs=39.7
Q ss_pred EEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 273 GIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 273 ~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
++||. +||..+.+.++.|.++||++.+| .+ |++++ ++.|++|..+..
T Consensus 13 aLISV--sDK~glvelAk~L~~lGfeI~AT----gG----Tak~L---~e~GI~v~~V~~ 59 (523)
T 3zzm_A 13 ALISV--YDKTGLVDLAQGLSAAGVEIIST----GS----TAKTI---ADTGIPVTPVEQ 59 (523)
T ss_dssp EEEEE--SSCTTHHHHHHHHHHTTCEEEEC----HH----HHHHH---HTTTCCCEEHHH
T ss_pred EEEEE--eccccHHHHHHHHHHCCCEEEEc----ch----HHHHH---HHcCCceeeccc
Confidence 37877 57899999999999999999888 66 89999 677999887644
No 118
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=70.90 E-value=12 Score=34.50 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEecccc
Q 013729 279 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~~ 335 (437)
+.+.+.++++.+.++..|.++..-.+. -..++.+.+++++..+ .+++++|-.||..
T Consensus 38 ~~~~~~~~~~~~~i~~~g~~~~~~~~D-vt~~~~v~~~~~~~~~~~G~iDiLVNNAGi~ 95 (254)
T 4fn4_A 38 ELLEDRLNQIVQELRGMGKEVLGVKAD-VSKKKDVEEFVRRTFETYSRIDVLCNNAGIM 95 (254)
T ss_dssp ESCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred ECCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCccc
Confidence 456788888888888888876554443 4567777777665433 3578888888743
No 119
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=70.19 E-value=1.1 Score=43.84 Aligned_cols=52 Identities=21% Similarity=0.418 Sum_probs=42.8
Q ss_pred cCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCCCCEEeccCC
Q 013729 305 SAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPLPVIGVPVR 356 (437)
Q Consensus 305 s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~pVi~~p~~ 356 (437)
..+-+.+.+.+..+.+++.+++++|++.||+ -.+..+++.....|+|.+|+.
T Consensus 69 ~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~~P~i~IPTT 121 (364)
T 3iv7_A 69 VMHVPIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMTTALPIVAIPTT 121 (364)
T ss_dssp CTTCBHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHCCCEEEEECS
T ss_pred ecCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhccCCCEEEEcCC
Confidence 3466677778888888889999999988876 478888888889999999985
No 120
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=69.09 E-value=0.43 Score=46.92 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=51.5
Q ss_pred CeEEEEEccCCCHHH-HHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc-ccccCcccCCCC
Q 013729 270 PRIGIIMGSDSDLPV-MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTP 347 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~-~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~ 347 (437)
.++.||++....... ...+.+.|++.| +...+.+-+-+.+.+.+..+.+++ +.+++|++.||+ -.+..+++-...
T Consensus 42 ~~~liVtd~~~~~~~~~~~v~~~L~~~g--~~~~~~~ge~~~~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~~~ 118 (376)
T 1kq3_A 42 ERAFVVIDDFVDKNVLGENFFSSFTKVR--VNKQIFGGECSDEEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYKLK 118 (376)
T ss_dssp SEEEEEECHHHHHHTTCTTGGGGCSSSE--EEEEECCSSCBHHHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHHTT
T ss_pred CeEEEEECccHHhhccHHHHHHHHHHcC--CeEEEeCCCCCHHHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHhcC
Confidence 356566633211111 223334444445 344444444444456666666777 889999888765 578888887778
Q ss_pred CCEEeccCC
Q 013729 348 LPVIGVPVR 356 (437)
Q Consensus 348 ~pVi~~p~~ 356 (437)
.|+|.+|+.
T Consensus 119 ~p~i~IPTT 127 (376)
T 1kq3_A 119 KPVVIVPTI 127 (376)
T ss_dssp CCEEEEESS
T ss_pred CCEEEecCc
Confidence 999999985
No 121
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=67.85 E-value=18 Score=26.26 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=27.3
Q ss_pred EEEEEccCCCHHHHHHHHHHHHHcCCcE---------EEEEecCCCChhHHHHhHhhhhhcCCeEEE
Q 013729 272 IGIIMGSDSDLPVMKDAAKILTMFSVPH---------EVRIVSAHRTPDLMFSYASSAHERGIEIII 329 (437)
Q Consensus 272 V~ii~gs~sD~~~~~~~~~~L~~~G~~~---------~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i 329 (437)
..|-.|+-++...++.....|...|++. .+. +++..+.++..+...+++..|++++|
T Consensus 10 ~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~-vGpf~~~~~A~~~~~~L~~~g~~~~i 75 (79)
T 1x60_A 10 YKVQIGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQ-IGAFSSKDNADTLAARAKNAGFDAIV 75 (79)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEE-EEEESSHHHHHHHHHHHHHHTSCCEE
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEE-ECCcCCHHHHHHHHHHHHHcCCceEE
Confidence 3344555555555555555555555542 122 12233444444455555544555444
No 122
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=63.87 E-value=0.82 Score=44.36 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=35.1
Q ss_pred CCChhHHHHhHhhhhhcCC---eEEEEecccc-ccccCccc--CCCCCCEEeccCC
Q 013729 307 HRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMVA--ARTPLPVIGVPVR 356 (437)
Q Consensus 307 hr~p~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i~--~~~~~pVi~~p~~ 356 (437)
+.+.+.+.+..+.+.+.|+ +++|+..||+ -.+.++++ -....|+|.+|+.
T Consensus 65 ~k~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~~rgip~i~IPTT 120 (343)
T 3clh_A 65 YKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTT 120 (343)
T ss_dssp GCSHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECS
T ss_pred CCCHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHhccCCCEEEeCCc
Confidence 3455666666666677777 7777776654 57777777 4567888888875
No 123
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=62.32 E-value=27 Score=28.62 Aligned_cols=68 Identities=25% Similarity=0.337 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccC--------CCCCCEEeccC
Q 013729 284 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA--------RTPLPVIGVPV 355 (437)
Q Consensus 284 ~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~--------~~~~pVi~~p~ 355 (437)
.+.++.+.+...|++++..+. ++.|. ..+++.+++.+++.+|.++.+...+..++-| +...||+-+|.
T Consensus 84 ~l~~~~~~~~~~g~~~~~~v~--~G~~~--~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~~ 159 (162)
T 1mjh_A 84 KMENIKKELEDVGFKVKDIIV--VGIPH--EEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKR 159 (162)
T ss_dssp HHHHHHHHHHHTTCEEEEEEE--EECHH--HHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECC
T ss_pred HHHHHHHHHHHcCCceEEEEc--CCCHH--HHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEeC
Confidence 345556667778998877654 35553 3455555777899888877444444443322 24455555554
No 124
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=59.65 E-value=16 Score=33.63 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhc--CCeEEEEeccc
Q 013729 279 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~--g~~v~i~~ag~ 334 (437)
+.+.+.+++..+.+.+.|.++..-.+. -..++.+.+++++..++ +++++|-+||.
T Consensus 40 ~~~~~~~~~~~~~l~~~g~~~~~~~~D-v~~~~~v~~~~~~~~~~~G~iDiLVNNAG~ 96 (255)
T 4g81_D 40 DIRATLLAESVDTLTRKGYDAHGVAFD-VTDELAIEAAFSKLDAEGIHVDILINNAGI 96 (255)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEECCCC-TTCHHHHHHHHHHHHHTTCCCCEEEECCCC
T ss_pred ECCHHHHHHHHHHHHhcCCcEEEEEee-CCCHHHHHHHHHHHHHHCCCCcEEEECCCC
Confidence 556777888888888888765433222 34567777776655443 46777777764
No 125
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=58.18 E-value=3.9 Score=40.06 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCcEEE-EEecCCCChhHHHHhHhhhhhcC---CeEEEEeccccc-cccCcccCC----------------
Q 013729 287 DAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERG---IEIIIAGAGGAA-HLPGMVAAR---------------- 345 (437)
Q Consensus 287 ~~~~~L~~~G~~~~~-~v~s~hr~p~~~~~~~~~~~~~g---~~v~i~~ag~~~-~l~~~i~~~---------------- 345 (437)
.+.+.|+..|+.+.. .-+..+-+.+.+.+..+.+++.+ ++++|++.||+. .++.+++..
T Consensus 68 ~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~ 147 (375)
T 3rf7_A 68 PLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLI 147 (375)
T ss_dssp HHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCC
T ss_pred HHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccc
Confidence 355566666777632 11344566666777777777777 889999887763 455555432
Q ss_pred --CCCCEEeccCC
Q 013729 346 --TPLPVIGVPVR 356 (437)
Q Consensus 346 --~~~pVi~~p~~ 356 (437)
...|+|.+|+.
T Consensus 148 ~~~~~P~i~IPTT 160 (375)
T 3rf7_A 148 KNPAVHHIGIPTV 160 (375)
T ss_dssp CSCCCCEEEEESS
T ss_pred cCCCCCEEEEcCC
Confidence 25899999985
No 126
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=57.80 E-value=88 Score=28.00 Aligned_cols=84 Identities=7% Similarity=0.022 Sum_probs=49.9
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCccc-
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA- 343 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~- 343 (437)
+..+|+++....++ ......+.+.++++|+.+... ..+..++.-.++++.+..++++.+|........+...+.
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~ 84 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVA--TSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEE 84 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEE--ECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEE--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH
Confidence 44678888765544 233444556778888876544 457777777778877778888877665432222222221
Q ss_pred -CCCCCCEEec
Q 013729 344 -ARTPLPVIGV 353 (437)
Q Consensus 344 -~~~~~pVi~~ 353 (437)
.....|||.+
T Consensus 85 ~~~~~iPvV~~ 95 (293)
T 3l6u_A 85 AKKAGIPVFAI 95 (293)
T ss_dssp HHHTTCCEEEE
T ss_pred HHHcCCCEEEe
Confidence 1235677765
No 127
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=56.98 E-value=38 Score=26.68 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCC
Q 013729 284 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR 345 (437)
Q Consensus 284 ~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~ 345 (437)
.+.++.+.+...|++++..+. ++.|. ..+++.++ +++.++.++.+...+..++ |.
T Consensus 67 ~l~~~~~~~~~~g~~~~~~v~--~g~~~--~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs 121 (138)
T 3idf_A 67 LTQKFSTFFTEKGINPFVVIK--EGEPV--EMVLEEAK--DYNLLIIGSSENSFLNKIF-AS 121 (138)
T ss_dssp HHHHHHHHHHTTTCCCEEEEE--ESCHH--HHHHHHHT--TCSEEEEECCTTSTTSSCC-CC
T ss_pred HHHHHHHHHHHCCCCeEEEEe--cCChH--HHHHHHHh--cCCEEEEeCCCcchHHHHh-Cc
Confidence 345556666778888877665 45553 33444434 7888888775555666655 53
No 128
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=56.36 E-value=5.4 Score=39.60 Aligned_cols=47 Identities=13% Similarity=-0.036 Sum_probs=39.2
Q ss_pred EEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 273 GIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 273 ~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
++| |.+||..+.+.++.|.++|+++.+| -+ |.+++ ++.|++|.-+..
T Consensus 16 ali--SV~DK~gl~~~A~~L~~~G~eiisT----gG----Tak~L---~~~Gi~v~~Vs~ 62 (464)
T 1zcz_A 16 ILV--SLYEKEKYLDILRELHEKGWEIWAS----SG----TAKFL---KSNGIEANDVST 62 (464)
T ss_dssp EEE--ECSSTGGGHHHHHHHHHTTCEEEEC----HH----HHHHH---HHTTCCCEEGGG
T ss_pred EEE--EecCccCHHHHHHHHHHCCCEEEEC----ch----HHHHH---HHCCCceEEHHh
Confidence 355 5778999999999999999998888 56 89998 677999988744
No 129
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=54.86 E-value=26 Score=20.26 Aligned_cols=24 Identities=21% Similarity=0.565 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHh
Q 013729 404 LRARMQQYMEDMRDDVLTKAEKLQ 427 (437)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~ 427 (437)
+++||+.+|.+..+++-+-.++++
T Consensus 2 lrkrlrkfrnkikeklkkigqkiq 25 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKLKKIGQKIQ 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999988888554444554
No 130
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=53.04 E-value=1.3e+02 Score=27.16 Aligned_cols=82 Identities=10% Similarity=0.086 Sum_probs=50.4
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccc-ccc-ccCcc
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAH-LPGMV 342 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~-~~~-l~~~i 342 (437)
+...|+++....++ ...+..+.+.++++|+.+... ..+..++.-.++++.+..++++-+|..... ... ....+
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l 91 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLG--QIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAV 91 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEE--ECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHH
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEE--eCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHH
Confidence 34568788765444 445566677888999887654 456777777778887788889966665422 211 22222
Q ss_pred cCCCCCCEEec
Q 013729 343 AARTPLPVIGV 353 (437)
Q Consensus 343 ~~~~~~pVi~~ 353 (437)
.. ..|||.+
T Consensus 92 ~~--~iPvV~i 100 (303)
T 3kke_A 92 LE--GVPAVTI 100 (303)
T ss_dssp HT--TSCEEEE
T ss_pred hC--CCCEEEE
Confidence 22 6788765
No 131
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=52.54 E-value=23 Score=28.38 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCC-cEEEEEecCCCChhHHHHhHh-hhhhcCCeEEEEeccccccccCcc
Q 013729 284 VMKDAAKILTMFSV-PHEVRIVSAHRTPDLMFSYAS-SAHERGIEIIIAGAGGAAHLPGMV 342 (437)
Q Consensus 284 ~~~~~~~~L~~~G~-~~~~~v~s~hr~p~~~~~~~~-~~~~~g~~v~i~~ag~~~~l~~~i 342 (437)
.+.++.+.+...|+ +++..+. ++.|. ..+++ .+++.+++.+|.++.+...+..++
T Consensus 70 ~l~~~~~~~~~~g~~~~~~~~~--~g~~~--~~I~~~~a~~~~~dliV~G~~~~~~~~~~~ 126 (146)
T 3s3t_A 70 AMRQRQQFVATTSAPNLKTEIS--YGIPK--HTIEDYAKQHPEIDLIVLGATGTNSPHRVA 126 (146)
T ss_dssp HHHHHHHHHTTSSCCCCEEEEE--EECHH--HHHHHHHHHSTTCCEEEEESCCSSCTTTCS
T ss_pred HHHHHHHHHHhcCCcceEEEEe--cCChH--HHHHHHHHhhcCCCEEEECCCCCCCcceEE
Confidence 34555566677788 7776654 34553 44555 567788998888775444554443
No 132
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=52.07 E-value=11 Score=27.75 Aligned_cols=53 Identities=11% Similarity=-0.009 Sum_probs=32.2
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcE---------EEEEecCCCChhHHHHhHhhhhhcCCeE
Q 013729 274 IIMGSDSDLPVMKDAAKILTMFSVPH---------EVRIVSAHRTPDLMFSYASSAHERGIEI 327 (437)
Q Consensus 274 ii~gs~sD~~~~~~~~~~L~~~G~~~---------~~~v~s~hr~p~~~~~~~~~~~~~g~~v 327 (437)
|-.|+-++...++.....|...|++. .+. +++..+.++..+...+++..|++.
T Consensus 12 vQvGaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~-vGpf~s~~~A~~~~~~L~~~g~~~ 73 (81)
T 1uta_A 12 VQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVV-IGPVKGKENADSTLNRLKMAGHTN 73 (81)
T ss_dssp CBCCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEE-ESSCBTTTHHHHHHHHHHHHCCSC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEE-ECCcCCHHHHHHHHHHHHHcCCCc
Confidence 45667777777777777777777763 222 234444555555665656556553
No 133
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=51.81 E-value=33 Score=29.14 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=50.1
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEE---------------EEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHE---------------VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 335 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~---------------~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~ 335 (437)
+| ++.|..+....+......|..+|+++. +-++|..|...++.+.++.++++|++++.......
T Consensus 39 ~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 117 (186)
T 1m3s_A 39 QI-FTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPE 117 (186)
T ss_dssp CE-EEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred eE-EEEecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 44 556655556777777777777777643 34467777777788888888999998764433222
Q ss_pred ccccCcccCCCCCCEEeccCC
Q 013729 336 AHLPGMVAARTPLPVIGVPVR 356 (437)
Q Consensus 336 ~~l~~~i~~~~~~pVi~~p~~ 356 (437)
..|.. ...-+|-+|..
T Consensus 118 s~l~~-----~ad~~l~~~~~ 133 (186)
T 1m3s_A 118 SSIGK-----QADLIIRMPGS 133 (186)
T ss_dssp SHHHH-----HCSEEEECSCC
T ss_pred CchHH-----hCCEEEEeCCc
Confidence 22322 23356667664
No 134
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=50.92 E-value=38 Score=28.54 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=40.5
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEE---------------EEEecCCCChhHHHHhHhhhhhcCCeEEEEe
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHE---------------VRIVSAHRTPDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~---------------~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
+| ++.|..+....+......|..+|+++. +-++|..|...++.+.++.++++|++++...
T Consensus 42 ~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT 116 (180)
T 1jeo_A 42 KI-FIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIV 116 (180)
T ss_dssp SE-EEECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEE
T ss_pred EE-EEEeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 44 556655556667777777777776533 3446667777778888888899999876443
No 135
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=50.65 E-value=48 Score=27.13 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCc
Q 013729 284 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGM 341 (437)
Q Consensus 284 ~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~ 341 (437)
.++++.+.+.+.|++++..+.-.++.|. ..+++.+++.+++.+|.++.+...+..+
T Consensus 79 ~l~~~~~~~~~~g~~~~~~~~v~~G~~~--~~I~~~a~~~~~DLIV~G~~g~~~~~~~ 134 (155)
T 3dlo_A 79 TLSWAVSIIRKEGAEGEEHLLVRGKEPP--DDIVDFADEVDAIAIVIGIRKRSPTGKL 134 (155)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSSCHH--HHHHHHHHHTTCSEEEEECCEECTTSCE
T ss_pred HHHHHHHHHHhcCCCceEEEEecCCCHH--HHHHHHHHHcCCCEEEECCCCCCCCCCE
Confidence 3555666777889998876544567764 4456666777899888877544444443
No 136
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=48.93 E-value=1.5e+02 Score=26.75 Aligned_cols=82 Identities=15% Similarity=0.132 Sum_probs=48.6
Q ss_pred CeEEEEEccC---CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCccc--C
Q 013729 270 PRIGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA--A 344 (437)
Q Consensus 270 ~~V~ii~gs~---sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~--~ 344 (437)
.+|+++..+. .-......+.+.++++|+.+... .....++.-.++++.+..++++.+|+.......+...+. .
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQ--SANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEE--ECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEE--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 4566666432 22455566667788888776544 456777777777777777888876665433222222332 1
Q ss_pred CCCCCEEec
Q 013729 345 RTPLPVIGV 353 (437)
Q Consensus 345 ~~~~pVi~~ 353 (437)
....|||.+
T Consensus 81 ~~~iPvV~~ 89 (313)
T 3m9w_A 81 QEGIKVLAY 89 (313)
T ss_dssp TTTCEEEEE
T ss_pred HCCCeEEEE
Confidence 235677765
No 137
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=48.89 E-value=26 Score=31.78 Aligned_cols=52 Identities=8% Similarity=0.030 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCC-cEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEeccc
Q 013729 282 LPVMKDAAKILTMFSV-PHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 282 ~~~~~~~~~~L~~~G~-~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
.+.++++.+.++++|- .+..-.+. -..++.+.+++++..+ .++++++-.+|.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~G~iD~lvnnAg~ 96 (256)
T 4fs3_A 42 ERSRKELEKLLEQLNQPEAHLYQID-VQSDEEVINGFEQIGKDVGNIDGVYHSIAF 96 (256)
T ss_dssp GGGHHHHHHHHGGGTCSSCEEEECC-TTCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEcc-CCCHHHHHHHHHHHHHHhCCCCEEEecccc
Confidence 3445556666666553 22222111 3455556555543322 246677766653
No 138
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=48.60 E-value=53 Score=30.59 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=50.1
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccc-cccccCccc
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGMVA 343 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~i~ 343 (437)
+...|+++....++ ...+..+.+.+++.|+.+.. ...+..++...++++.+..++++-+|..... ...+...+.
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~ 134 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLE 134 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHH
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHH
Confidence 34578888754433 23344556677889987655 3456777777777777777888876664322 222333333
Q ss_pred CCCCCCEEec
Q 013729 344 ARTPLPVIGV 353 (437)
Q Consensus 344 ~~~~~pVi~~ 353 (437)
.....|||.+
T Consensus 135 ~~~~iPvV~~ 144 (340)
T 1qpz_A 135 EYRHIPMVVM 144 (340)
T ss_dssp TTTTSCEEEE
T ss_pred hhCCCCEEEE
Confidence 2245677765
No 139
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=47.61 E-value=96 Score=27.69 Aligned_cols=63 Identities=14% Similarity=0.031 Sum_probs=39.4
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+..+|+++....++ ......+.+.++++|+.+... ..+.++++-.+.++.+..++++.+|+..
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 69 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIAL--DAGRNDQTQVSQIQTLIAQKPDAIIEQL 69 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHHCCSEEEEES
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEE--cCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34567777654443 233455566777788765544 4567777667777777777888666543
No 140
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=46.50 E-value=78 Score=28.70 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=52.0
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCC---cEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCccc
Q 013729 270 PRIGIIMGSDSD---LPVMKDAAKILTMFSV---PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 343 (437)
Q Consensus 270 ~~V~ii~gs~sD---~~~~~~~~~~L~~~G~---~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 343 (437)
.+|+++. .-++ -...+.+.+.|.+.|+ .+.+.+.++++.+++..++++.+.+++++.+|+....+. ..+..
T Consensus 3 ~~Igvi~-~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~~--~~~~~ 79 (295)
T 3lft_A 3 AKIGVLQ-FVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIATPAA--QGLAS 79 (295)
T ss_dssp EEEEEEE-CSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESHHHH--HHHHH
T ss_pred eEEEEEE-ccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCcHHH--HHHHH
Confidence 3566662 2222 2334555677888999 877777788899988888888888888887776542111 11111
Q ss_pred CCCCCCEEecc
Q 013729 344 ARTPLPVIGVP 354 (437)
Q Consensus 344 ~~~~~pVi~~p 354 (437)
.....|||-+-
T Consensus 80 ~~~~iPvV~~~ 90 (295)
T 3lft_A 80 ATKDLPVIMAA 90 (295)
T ss_dssp HCSSSCEEEES
T ss_pred cCCCCCEEEEe
Confidence 23567888764
No 141
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=46.32 E-value=40 Score=27.79 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCcEEE--EEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCccc--------CCCCCCEEecc
Q 013729 285 MKDAAKILTMFSVPHEV--RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA--------ARTPLPVIGVP 354 (437)
Q Consensus 285 ~~~~~~~L~~~G~~~~~--~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~--------~~~~~pVi~~p 354 (437)
++++.+.+...|++++. .+. .+.|. ..+++.+++.+++.+|.++.+...+..++- .+...||+-+|
T Consensus 80 l~~~~~~~~~~g~~~~~~~~~~--~g~~~--~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~ 155 (170)
T 2dum_A 80 LQEKAEEVKRAFRAKNVRTIIR--FGIPW--DEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIK 155 (170)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEE--EECHH--HHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHcCCceeeeeEEe--cCChH--HHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEc
Confidence 44455556667888776 544 35553 445555577788988887644444444332 24567888877
Q ss_pred CC
Q 013729 355 VR 356 (437)
Q Consensus 355 ~~ 356 (437)
..
T Consensus 156 ~~ 157 (170)
T 2dum_A 156 EV 157 (170)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 142
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=46.29 E-value=1.6e+02 Score=26.22 Aligned_cols=83 Identities=10% Similarity=0.041 Sum_probs=52.0
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccc-cccccCccc
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGMVA 343 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~i~ 343 (437)
+...|+++..+.++ ...+..+.+.++++|+.+... ..+..+++..++++.+..++++-+|..... .......+
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~- 83 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLA--NTAEDIVREREAVGQFFERRVDGLILAPSEGEHDYLRTE- 83 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHS-
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEE--eCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHh-
Confidence 45678888766555 334555567788889776544 567788877778888888889977664422 11111112
Q ss_pred CCCCCCEEec
Q 013729 344 ARTPLPVIGV 353 (437)
Q Consensus 344 ~~~~~pVi~~ 353 (437)
.....|||.+
T Consensus 84 ~~~~iPvV~~ 93 (291)
T 3egc_A 84 LPKTFPIVAV 93 (291)
T ss_dssp SCTTSCEEEE
T ss_pred hccCCCEEEE
Confidence 2346688765
No 143
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=46.12 E-value=77 Score=28.77 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=52.9
Q ss_pred eEEEEEccCC--CHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcc------
Q 013729 271 RIGIIMGSDS--DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV------ 342 (437)
Q Consensus 271 ~V~ii~gs~s--D~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i------ 342 (437)
.+-++...+. ....++++.+.|.+.|++++..+. ++.|. ..+++.+++.+++.++.++.+...+..++
T Consensus 200 ~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~--~g~~~--~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~ 275 (294)
T 3loq_A 200 ELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIE--SGTPH--KAILAKREEINATTIFMGSRGAGSVMTMILGSTSE 275 (294)
T ss_dssp EEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEE--CSCHH--HHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHH
T ss_pred EEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEe--cCCHH--HHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHH
Confidence 3334444332 567788888999999999887765 45553 44555557778998888775444444432
Q ss_pred --cCCCCCCEEeccCC
Q 013729 343 --AARTPLPVIGVPVR 356 (437)
Q Consensus 343 --~~~~~~pVi~~p~~ 356 (437)
..+...||+-+|.+
T Consensus 276 ~vl~~~~~pvLvv~~~ 291 (294)
T 3loq_A 276 SVIRRSPVPVFVCKRG 291 (294)
T ss_dssp HHHHHCSSCEEEECSC
T ss_pred HHHhcCCCCEEEECCC
Confidence 23456777777764
No 144
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=45.52 E-value=1.8e+02 Score=26.70 Aligned_cols=123 Identities=12% Similarity=0.011 Sum_probs=69.4
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccC
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 344 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 344 (437)
+...|+++....++ ...+..+.+.++++|+.+... ..+. ++.-.++++.+..++++-+|.... +..+ .
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~-~~~~~~~~~~l~~~~vdGiIi~~~----~~~~--~ 133 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVA--EANS-VQAQDVVMESLISIQAAGIIHVPV----VGSI--A 133 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEE--ECCS-HHHHHHHHHHHHHHTCSEEEECCC----TTCC--C
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEE--CCCC-hHHHHHHHHHHHhCCCCEEEEcch----HHHH--h
Confidence 34578888765544 234555567788899876655 4455 777777887777888997766542 2221 2
Q ss_pred CCCCCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcc-------------CChHHHHHHHHH
Q 013729 345 RTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGF-------------GDADLRARMQQY 411 (437)
Q Consensus 345 ~~~~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~~~~aa~~a~~~l~~-------------~~~~~~~~~~~~ 411 (437)
....|||.+-... . ..+++++ .+| -..++..|++-|.- ......+|++.|
T Consensus 134 ~~~iPvV~~~~~~---~-----------~~~~~~V--~~D-~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 196 (333)
T 3jvd_A 134 PEGIPMVQLTRGE---L-----------GPGFPRV--LCD-DEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGI 196 (333)
T ss_dssp -CCSCEEEECC------------------CCSCEE--EEC-HHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHH
T ss_pred hCCCCEEEECccC---C-----------CCCCCEE--EEC-hHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHH
Confidence 3456777652210 0 1233343 333 44566666665432 233556777777
Q ss_pred HHHhH
Q 013729 412 MEDMR 416 (437)
Q Consensus 412 ~~~~~ 416 (437)
+..+.
T Consensus 197 ~~al~ 201 (333)
T 3jvd_A 197 SHAAS 201 (333)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 145
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate metabolism, cytoplasm, fucose metabolism, manganese, metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A 3a9t_A*
Probab=45.28 E-value=1.6e+02 Score=30.48 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=43.7
Q ss_pred CCcEEEEEec-CCCChhHHHHhHhhhhhcCCeEEEEeccc--cccccCcccCCCCCCEEeccCCCCCCCChhhHHHhhhC
Q 013729 296 SVPHEVRIVS-AHRTPDLMFSYASSAHERGIEIIIAGAGG--AAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQM 372 (437)
Q Consensus 296 G~~~~~~v~s-~hr~p~~~~~~~~~~~~~g~~v~i~~ag~--~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~~~~~~ 372 (437)
|.++++..+. .-.+.++..+..+.+++.+++++++.-+- -++..-..+.+.++.|.|.+... ..|...|.+..+.
T Consensus 55 g~~vevV~~~~~I~~~~eA~~~ae~F~~~~vd~ii~~~~~w~yg~et~~~~~~~Pvllw~~~~~e--~pG~~gl~a~~~~ 132 (595)
T 3a9s_A 55 GQPVECVIADTCIGGVKEAAEAAEKFAREGVGVSITVTPCWCYGTETMDMDPHIPKAVWGFNGTE--RPGAVYLAAVLAG 132 (595)
T ss_dssp SCBCCEEECSSCBCSHHHHHHHHHHHHHHTEEEEEEEESSCCCGGGTCCCCTTSCEEEEECCCSS--SCHHHHHHHHHHH
T ss_pred CCCeEEEECCCeeCCHHHHHHHHHHHHHcCCCEEEEEeccCCCHHHHHhhcCCCCEEEEeCCCCC--CcchhHHHHHHHH
Confidence 3344444332 33556666667777777777766653321 11222222334444555665422 2256556655544
Q ss_pred --CCCCceEEEE
Q 013729 373 --PRGVPVATVA 382 (437)
Q Consensus 373 --~~gvp~~tv~ 382 (437)
-.|+|..++-
T Consensus 133 l~q~Gip~~~I~ 144 (595)
T 3a9s_A 133 YNQKGLPAFGIY 144 (595)
T ss_dssp HHHHTCCCEEEE
T ss_pred HHHcCCceEEEe
Confidence 6788877664
No 146
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=44.35 E-value=40 Score=28.04 Aligned_cols=68 Identities=12% Similarity=0.175 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccC--------CCCCCEEeccC
Q 013729 284 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA--------RTPLPVIGVPV 355 (437)
Q Consensus 284 ~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~--------~~~~pVi~~p~ 355 (437)
.++++.+.+...|++++..+. ++.|. ..+++.+++.+++.+|.++-+...+..++-| +...||+-+|.
T Consensus 88 ~l~~~~~~~~~~g~~~~~~v~--~G~~~--~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~~ 163 (175)
T 2gm3_A 88 LLEFFVNKCHEIGVGCEAWIK--TGDPK--DVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKR 163 (175)
T ss_dssp HHHHHHHHHHHHTCEEEEEEE--ESCHH--HHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHHCCCceEEEEe--cCCHH--HHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEcC
Confidence 344555566778988877665 45553 4455556777899888776444444443322 34567777665
No 147
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=44.27 E-value=77 Score=26.66 Aligned_cols=32 Identities=22% Similarity=0.102 Sum_probs=20.8
Q ss_pred EEEEecCCCChhHHHHhHhhhhhcCCeEEEEe
Q 013729 300 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 300 ~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
.+-++|..|...++.+.++.++++|++++..-
T Consensus 90 ~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT 121 (187)
T 3sho_A 90 LMIGVSVWRYLRDTVAALAGAAERGVPTMALT 121 (187)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEe
Confidence 34445666666667777777777888765443
No 148
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=44.14 E-value=1.5e+02 Score=25.90 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=40.2
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
..|+++..+.++ ......+.+.++++|+.+... ..+..+++..++++.+..++++-+|...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 66 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIA--SSDDQPDSERQLQQLFRARRCDALFVAS 66 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEE--eCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 467777765444 233444556777888876554 4567777777777777778888766654
No 149
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=43.41 E-value=66 Score=28.76 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhc-CCeEEEEecccc
Q 013729 280 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER-GIEIIIAGAGGA 335 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~-g~~v~i~~ag~~ 335 (437)
.+.+.++++.+.+...|..+..-.+. -.+++.+.+++++..++ +++++|-+||..
T Consensus 39 r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~g~id~lv~nAg~~ 94 (252)
T 3h7a_A 39 RNGEKLAPLVAEIEAAGGRIVARSLD-ARNEDEVTAFLNAADAHAPLEVTIFNVGAN 94 (252)
T ss_dssp SSGGGGHHHHHHHHHTTCEEEEEECC-TTCHHHHHHHHHHHHHHSCEEEEEECCCCC
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEECc-CCCHHHHHHHHHHHHhhCCceEEEECCCcC
Confidence 34566677777777777665544333 35567777766544333 567777777643
No 150
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.24 E-value=1.4e+02 Score=27.46 Aligned_cols=75 Identities=15% Similarity=0.067 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccC--CCHHHHHHHHHHHHHcCCcEEEEEec-CCCChhHHHHhHhh
Q 013729 243 GSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSD--SDLPVMKDAAKILTMFSVPHEVRIVS-AHRTPDLMFSYASS 319 (437)
Q Consensus 243 G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~--sD~~~~~~~~~~L~~~G~~~~~~v~s-~hr~p~~~~~~~~~ 319 (437)
+.+...++..|..+++.... +....+|.++++|+ .|...+.++++.+++.|+.+++--.+ -.-+.+.+.+|.+.
T Consensus 84 ~T~l~~gL~~A~~aLk~~~~---k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~ 160 (268)
T 4b4t_W 84 KLHMATALQIAQLTLKHRQN---KVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAA 160 (268)
T ss_dssp CCCHHHHHHHHHHHHHTCSC---TTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccc---CCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHH
Confidence 35778889988888875331 11234565666664 46778999999999999987543333 23455667777754
Q ss_pred h
Q 013729 320 A 320 (437)
Q Consensus 320 ~ 320 (437)
.
T Consensus 161 ~ 161 (268)
T 4b4t_W 161 V 161 (268)
T ss_dssp H
T ss_pred h
Confidence 4
No 151
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=43.20 E-value=48 Score=32.20 Aligned_cols=85 Identities=15% Similarity=0.136 Sum_probs=53.3
Q ss_pred CCCeEEEEEccCC----CHHHHHHHHHHHHHcCCcEEEEEec------CCCChh-HHHHhHhhhhhcCCeEEEEecccc-
Q 013729 268 ILPRIGIIMGSDS----DLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGGA- 335 (437)
Q Consensus 268 ~~~~V~ii~gs~s----D~~~~~~~~~~L~~~G~~~~~~v~s------~hr~p~-~~~~~~~~~~~~g~~v~i~~ag~~- 335 (437)
+..+|+||+-|.. +...++.+.+.|+++|+++...-.- .-++++ |.+++..-+.+..++++++..||.
T Consensus 42 ~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGGyg 121 (371)
T 3tla_A 42 VGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGGDN 121 (371)
T ss_dssp TTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCCSC
T ss_pred CcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccccc
Confidence 4567999986643 4577888899999999997654210 012343 444455555677888888888764
Q ss_pred -ccccCcccC----CCCCCEEe
Q 013729 336 -AHLPGMVAA----RTPLPVIG 352 (437)
Q Consensus 336 -~~l~~~i~~----~~~~pVi~ 352 (437)
+.|.+.+.- ...++++|
T Consensus 122 a~rlLp~LD~~~i~~~PK~fiG 143 (371)
T 3tla_A 122 SNSLLPFLDYDAIIANPKIIIG 143 (371)
T ss_dssp GGGGGGGSCHHHHHHSCCEEEE
T ss_pred HHHHHhhcChhhHHhCCcEEEE
Confidence 455554410 13456665
No 152
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=43.10 E-value=1.2e+02 Score=28.14 Aligned_cols=84 Identities=13% Similarity=0.024 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhccCCcc-------cccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 247 GLVESRLNSLLKEDSSD-------CQFKILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 247 ~eA~~k~~~a~~~i~~~-------~~~~~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
++..++..++++++... ....+...|+++....++ ...+..+.+.++++|+.+... ..+..+++..++
T Consensus 39 ~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~ 116 (344)
T 3kjx_A 39 DATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVG--VTDYLPEKEEKV 116 (344)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEE--ECTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEE--eCCCCHHHHHHH
Confidence 45556666665543321 011134568888765443 344555667778888876543 557788887888
Q ss_pred HhhhhhcCCeEEEEec
Q 013729 317 ASSAHERGIEIIIAGA 332 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~a 332 (437)
++.+..++++-+|...
T Consensus 117 i~~l~~~~vdGiIi~~ 132 (344)
T 3kjx_A 117 LYEMLSWRPSGVIIAG 132 (344)
T ss_dssp HHHHHTTCCSEEEEEC
T ss_pred HHHHHhCCCCEEEEEC
Confidence 8877788888666543
No 153
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=42.96 E-value=1e+02 Score=31.02 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=41.8
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEe
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
...|.++..++.....+.+++..|++.|+.+++. +..-..+.+-++.+...|++..+++
T Consensus 419 ~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~----~~~~~~l~~q~k~A~~~g~~~~vii 477 (517)
T 4g85_A 419 ETQVLVASAQKKLLEERLKLVSELWDAGIKAELL----YKKNPKLLNQLQYCEEAGIPLVAII 477 (517)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEEC----SSSSCCHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEE----eCCCCCHHHHHHHHHHCCCCEEEEE
Confidence 3457677777777899999999999999998876 3211124444556678899955554
No 154
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=42.27 E-value=1.7e+02 Score=25.80 Aligned_cols=79 Identities=16% Similarity=0.056 Sum_probs=45.8
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccC
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 344 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 344 (437)
+...|+++..+.++ ......+.+.++++|+.+... ..+ +++...++++.+..++++-+| ... ... ...+..
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~-~~~~~~~~~~~l~~~~vdgiI-~~~-~~~-~~~~~~ 77 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVI--DSL-TSQAGTDPITSALSMRPDGII-IAQ-DIP-DFTVPD 77 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEE--CSS-SSCSSSCHHHHHHTTCCSEEE-EES-CC--------
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEE--eCC-CchHHHHHHHHHHhCCCCEEE-ecC-CCC-hhhHhh
Confidence 44678888765444 445566677888899876554 445 666556667666778899777 332 111 222322
Q ss_pred CCCCCEEec
Q 013729 345 RTPLPVIGV 353 (437)
Q Consensus 345 ~~~~pVi~~ 353 (437)
...|||.+
T Consensus 78 -~~iPvV~~ 85 (280)
T 3gyb_A 78 -SLPPFVIA 85 (280)
T ss_dssp --CCCEEEE
T ss_pred -cCCCEEEE
Confidence 56677765
No 155
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=41.95 E-value=1.7e+02 Score=25.91 Aligned_cols=85 Identities=9% Similarity=-0.006 Sum_probs=44.9
Q ss_pred CCeEEEEEccCC--C---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCccc
Q 013729 269 LPRIGIIMGSDS--D---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 343 (437)
Q Consensus 269 ~~~V~ii~gs~s--D---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 343 (437)
..+|+++....+ + ......+.+.++++|+.+.......+..+++..+.++.+..++++.+|........+...+.
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 84 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAK 84 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHT
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHH
Confidence 456777765433 2 12334445667778876554322225666666667766667788866665432222212221
Q ss_pred C--CCCCCEEec
Q 013729 344 A--RTPLPVIGV 353 (437)
Q Consensus 344 ~--~~~~pVi~~ 353 (437)
- ....|||.+
T Consensus 85 ~~~~~~iPvV~~ 96 (289)
T 3brs_A 85 EIKDAGIKLIVI 96 (289)
T ss_dssp TTGGGTCEEEEE
T ss_pred HHHHCCCcEEEE
Confidence 1 234677765
No 156
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=41.75 E-value=1.5e+02 Score=27.16 Aligned_cols=85 Identities=9% Similarity=0.008 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhccCCcc----cc-cCCCCeEEEEEcc-CCC---HHHHHHHHHHHHHcCCcEEEEEecCC--CChhHHHH
Q 013729 247 GLVESRLNSLLKEDSSD----CQ-FKILPRIGIIMGS-DSD---LPVMKDAAKILTMFSVPHEVRIVSAH--RTPDLMFS 315 (437)
Q Consensus 247 ~eA~~k~~~a~~~i~~~----~~-~~~~~~V~ii~gs-~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h--r~p~~~~~ 315 (437)
++..+|..++++++... .. ..+...|+++..+ .++ ...+..+.+.++++|+.+.+.+...+ ..+++-.+
T Consensus 16 ~~tr~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 95 (342)
T 1jx6_A 16 PEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSL 95 (342)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHH
Confidence 45566666666653322 11 1123468888755 222 23445556778889998877654445 57776667
Q ss_pred hHhhhhhcCCeEEEEe
Q 013729 316 YASSAHERGIEIIIAG 331 (437)
Q Consensus 316 ~~~~~~~~g~~v~i~~ 331 (437)
+++.+..++++.+|+.
T Consensus 96 ~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 96 SLMEALKSKSDYLIFT 111 (342)
T ss_dssp HHHHHHHTTCSEEEEC
T ss_pred HHHHHHhcCCCEEEEe
Confidence 7777777889977763
No 157
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=41.33 E-value=67 Score=29.23 Aligned_cols=85 Identities=18% Similarity=0.101 Sum_probs=51.5
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+..=-.+-+.+.++ ....| ++. +.+.+.+++..+.+...|..+....+. -.+++.+.+++
T Consensus 26 ~~lVTGas~GIG~aia~~la~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~ 92 (279)
T 3sju_A 26 TAFVTGVSSGIGLAVARTLAA---------RGIAV-YGC--ARDAKNVSAAVDGLRAAGHDVDGSSCD-VTSTDEVHAAV 92 (279)
T ss_dssp EEEEESTTSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHTTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHH
Confidence 467777765544443433332 22345 333 356677888888888888776555443 45677777776
Q ss_pred hhhhhc--CCeEEEEecccc
Q 013729 318 SSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 318 ~~~~~~--g~~v~i~~ag~~ 335 (437)
++..++ .++++|-+||..
T Consensus 93 ~~~~~~~g~id~lv~nAg~~ 112 (279)
T 3sju_A 93 AAAVERFGPIGILVNSAGRN 112 (279)
T ss_dssp HHHHHHHCSCCEEEECCCCC
T ss_pred HHHHHHcCCCcEEEECCCCC
Confidence 544332 678888888753
No 158
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=41.04 E-value=68 Score=28.83 Aligned_cols=56 Identities=11% Similarity=0.023 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhc--CCeEEEEecccc
Q 013729 279 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~--g~~v~i~~ag~~ 335 (437)
+.+.+.++++.+.+...|..+..-.+. -..++.+.+++++..++ +++++|-+||..
T Consensus 42 ~r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 99 (264)
T 3ucx_A 42 ARTVERLEDVAKQVTDTGRRALSVGTD-ITDDAQVAHLVDETMKAYGRVDVVINNAFRV 99 (264)
T ss_dssp ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHTSCCSEEEECCCSC
T ss_pred eCCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 346677888888888888776544333 45677777776554332 678888888653
No 159
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=40.52 E-value=45 Score=27.58 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCc-EEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcc--------cCCCCCCEEec
Q 013729 283 PVMKDAAKILTMFSVP-HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV--------AARTPLPVIGV 353 (437)
Q Consensus 283 ~~~~~~~~~L~~~G~~-~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i--------~~~~~~pVi~~ 353 (437)
..+.++.+.+...|++ ++..+. .+.| ...+++.+++.+++.+|.++-+...+..++ ..+...||+-+
T Consensus 81 ~~l~~~~~~~~~~gv~~v~~~v~--~G~~--~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 81 EILHDAKERAHNAGAKNVEERPI--VGAP--VDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEEE--CSSH--HHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEe--cCCH--HHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEE
Confidence 4566666777788988 777665 4565 344555557788998887764433433322 22345677766
Q ss_pred cCC
Q 013729 354 PVR 356 (437)
Q Consensus 354 p~~ 356 (437)
|..
T Consensus 157 ~~~ 159 (163)
T 1tq8_A 157 HTT 159 (163)
T ss_dssp CCC
T ss_pred eCC
Confidence 653
No 160
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=40.15 E-value=52 Score=31.39 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=53.0
Q ss_pred CCCeEEEEEccCC----CHHHHHHHHHHHHHcCCcEEEEEec------CCCChh-HHHHhHhhhhhcCCeEEEEecccc-
Q 013729 268 ILPRIGIIMGSDS----DLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGGA- 335 (437)
Q Consensus 268 ~~~~V~ii~gs~s----D~~~~~~~~~~L~~~G~~~~~~v~s------~hr~p~-~~~~~~~~~~~~g~~v~i~~ag~~- 335 (437)
+..+|+||+-|.. +...++.+.+.|+++|+++...-.- .-++++ +.+++..-+.+..++++++..||.
T Consensus 12 ~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 91 (336)
T 3sr3_A 12 YGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGGMN 91 (336)
T ss_dssp TTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCCCSC
T ss_pred CCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcccccc
Confidence 4557999986653 4567888899999999997654110 012343 444455555667888888888764
Q ss_pred -ccccCccc----CCCCCCEEe
Q 013729 336 -AHLPGMVA----ARTPLPVIG 352 (437)
Q Consensus 336 -~~l~~~i~----~~~~~pVi~ 352 (437)
+.|.+.+. ....++++|
T Consensus 92 ~~rlL~~lD~~~i~~~PK~~~G 113 (336)
T 3sr3_A 92 SNSLLPYIDYDAFQNNPKIMIG 113 (336)
T ss_dssp GGGGGGGSCHHHHHHSCCEEEE
T ss_pred HHHHhhhcChhHHhhCCeEEEE
Confidence 45555541 113556665
No 161
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=40.07 E-value=1.2e+02 Score=27.25 Aligned_cols=86 Identities=9% Similarity=0.065 Sum_probs=48.3
Q ss_pred CCCeEEEEEccC-CC---HHHHHHHHHHHHHc-CCcEEEEEe-cCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCc
Q 013729 268 ILPRIGIIMGSD-SD---LPVMKDAAKILTMF-SVPHEVRIV-SAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGM 341 (437)
Q Consensus 268 ~~~~V~ii~gs~-sD---~~~~~~~~~~L~~~-G~~~~~~v~-s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~ 341 (437)
+..+|+++.... ++ ......+.+.++++ |+.+.+... ..+.++++..++++.+..++++-+|+...........
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 86 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF 86 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHH
Confidence 345677766543 22 23344455666777 888776654 3456777777777777777888666654222222222
Q ss_pred cc--CCCCCCEEec
Q 013729 342 VA--ARTPLPVIGV 353 (437)
Q Consensus 342 i~--~~~~~pVi~~ 353 (437)
+. .....|||.+
T Consensus 87 ~~~~~~~~iPvV~~ 100 (304)
T 3gbv_A 87 TDALNELGIPYIYI 100 (304)
T ss_dssp HHHHHHHTCCEEEE
T ss_pred HHHHHHCCCeEEEE
Confidence 21 1235677765
No 162
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=39.97 E-value=2.5e+02 Score=26.66 Aligned_cols=130 Identities=8% Similarity=0.051 Sum_probs=67.1
Q ss_pred CeEEEEEcc-CCCHHHH----HHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec-cccccccCccc
Q 013729 270 PRIGIIMGS-DSDLPVM----KDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA-GGAAHLPGMVA 343 (437)
Q Consensus 270 ~~V~ii~gs-~sD~~~~----~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a-g~~~~l~~~i~ 343 (437)
.+|++|..+ -.|.+.. +.+.+..+++|-++++.++......++..+.++++.++|++++|+.. +....+..+..
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~ 106 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVAK 106 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHHHHT
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
Confidence 467777643 2343333 33344556778556666555444444566777777788888777654 22223333333
Q ss_pred CCCCCCEEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCC---cchHHHHHHHHH---------ccCChHHHHHHHHH
Q 013729 344 ARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN---ATNAGLLAVRML---------GFGDADLRARMQQY 411 (437)
Q Consensus 344 ~~~~~pVi~~p~~~~~~~g~~~l~~~~~~~~gvp~~tv~~~~---~~~aa~~a~~~l---------~~~~~~~~~~~~~~ 411 (437)
..-..|++.+-.. .. .++ +.++..++ ++-|+.+|..+. +...|.+..++..|
T Consensus 107 ~~Pdv~fv~id~~---~~-----------~~N--v~sv~~~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~~~~GF 170 (356)
T 3s99_A 107 KFPDVKFEHATGY---KT-----------ADN--MSAYNARFYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQGINSF 170 (356)
T ss_dssp TCTTSEEEEESCC---CC-----------BTT--EEEEEECHHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHHHHHHH
T ss_pred HCCCCEEEEEecc---cc-----------CCc--EEEEEechhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHH
Confidence 3334556655211 00 123 44444442 344444444431 23467777778777
Q ss_pred HHHh
Q 013729 412 MEDM 415 (437)
Q Consensus 412 ~~~~ 415 (437)
++-.
T Consensus 171 ~~G~ 174 (356)
T 3s99_A 171 MLGA 174 (356)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 163
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=39.93 E-value=67 Score=30.44 Aligned_cols=84 Identities=15% Similarity=0.085 Sum_probs=53.2
Q ss_pred CCCeEEEEEccC----CCHHHHHHHHHHHHHcCCcEEEEEec------CCCChh-HHHHhHhhhhhcCCeEEEEecccc-
Q 013729 268 ILPRIGIIMGSD----SDLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGGA- 335 (437)
Q Consensus 268 ~~~~V~ii~gs~----sD~~~~~~~~~~L~~~G~~~~~~v~s------~hr~p~-~~~~~~~~~~~~g~~v~i~~ag~~- 335 (437)
+.-+|+||+-|. .+...++.+.+.|+++|+++...-.- .-++++ +..++..-+.+..++.+++..||.
T Consensus 11 ~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 90 (327)
T 4h1h_A 11 QGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGFN 90 (327)
T ss_dssp TTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSC
T ss_pred CCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCchh
Confidence 445899997663 25567888899999999997654210 112443 445555556777888888887764
Q ss_pred -ccccCcc-----cCCCCCCEEe
Q 013729 336 -AHLPGMV-----AARTPLPVIG 352 (437)
Q Consensus 336 -~~l~~~i-----~~~~~~pVi~ 352 (437)
+.|.+.+ +. ..++++|
T Consensus 91 ~~rlL~~LD~~~i~~-~PK~~~G 112 (327)
T 4h1h_A 91 SNQLLPYLDYDLISE-NPKILCG 112 (327)
T ss_dssp GGGGGGGCCHHHHHH-SCCEEEE
T ss_pred HHHHhhhcchhhhcc-CCeEEEe
Confidence 4555433 22 3566666
No 164
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=39.63 E-value=60 Score=32.89 Aligned_cols=58 Identities=16% Similarity=-0.012 Sum_probs=38.3
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeE
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEI 327 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v 327 (437)
..+|.|++|.-.+=....-+++.|...|+++.+-..+...+++ ....++.+++-|+++
T Consensus 52 ~~~v~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~-~~~~~~~~~~~g~~~ 109 (502)
T 3rss_A 52 DYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPD-CEYNYGLYKKFGGKV 109 (502)
T ss_dssp TCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHH-HHHHHHHHHHTTCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEECCCCCHH-HHHHHHHHHhCCCce
Confidence 4577788888777778888888999999887776655443333 333334445545543
No 165
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=39.52 E-value=48 Score=26.56 Aligned_cols=31 Identities=13% Similarity=-0.031 Sum_probs=21.0
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcE
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPH 299 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~ 299 (437)
...|++|=.|+..-.....+.+.|.+.||++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V 34 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEF 34 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCE
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeE
Confidence 3467676555555556777788888888864
No 166
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=39.42 E-value=69 Score=30.46 Aligned_cols=85 Identities=18% Similarity=0.110 Sum_probs=53.9
Q ss_pred CCCeEEEEEccCC----CHHHHHHHHHHHHHcCCcEEEEEec------CCCChh-HHHHhHhhhhhcCCeEEEEecccc-
Q 013729 268 ILPRIGIIMGSDS----DLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGGA- 335 (437)
Q Consensus 268 ~~~~V~ii~gs~s----D~~~~~~~~~~L~~~G~~~~~~v~s------~hr~p~-~~~~~~~~~~~~g~~v~i~~ag~~- 335 (437)
+..+|+||+-|.. +...++.+.+.|+++|+++...-.- .-++++ +.+++..-+.+..++.+++..||.
T Consensus 11 ~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 90 (331)
T 4e5s_A 11 KGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGYN 90 (331)
T ss_dssp TTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSC
T ss_pred CcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccccc
Confidence 4557999976644 4678888899999999997654210 013443 444455555667889888888764
Q ss_pred -ccccCccc----CCCCCCEEe
Q 013729 336 -AHLPGMVA----ARTPLPVIG 352 (437)
Q Consensus 336 -~~l~~~i~----~~~~~pVi~ 352 (437)
+.|.+.+. ....++++|
T Consensus 91 ~~rlL~~lD~~~i~~~PK~~~G 112 (331)
T 4e5s_A 91 SNGLLKYLDYDLIRENPKFFCG 112 (331)
T ss_dssp GGGGGGGCCHHHHHTSCCEEEE
T ss_pred HHHHHhhcChhHHHhCCeEEEE
Confidence 45555441 023566666
No 167
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=38.98 E-value=1e+02 Score=27.23 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=47.9
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
++++|.+..=-..-+++.++ ....| ++. +.+.+.++++.+.+...|..+..-.+. -.+++.+.++++
T Consensus 12 vlITGas~giG~~~a~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~ 78 (253)
T 3qiv_A 12 GIVTGSGGGIGQAYAEALAR---------EGAAV-VVA--DINAEAAEAVAKQIVADGGTAISVAVD-VSDPESAKAMAD 78 (253)
T ss_dssp EEEETTTSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHTTCEEEEEECC-TTSHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHHHHH---------CCCEE-EEE--cCCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHH
Confidence 56677665544443443332 22344 333 346677777777777777665443332 456676777665
Q ss_pred hhhhc--CCeEEEEeccc
Q 013729 319 SAHER--GIEIIIAGAGG 334 (437)
Q Consensus 319 ~~~~~--g~~v~i~~ag~ 334 (437)
+..+. +++++|-+||.
T Consensus 79 ~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 79 RTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 44332 68888888865
No 168
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A*
Probab=38.64 E-value=2.6e+02 Score=29.20 Aligned_cols=93 Identities=9% Similarity=0.044 Sum_probs=66.3
Q ss_pred eeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---------
Q 013729 235 KMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS--------- 305 (437)
Q Consensus 235 ~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s--------- 305 (437)
.+=..+..|.+..+++++-.+..+.-..+ |...-|-- ...-+-.+...+.++++.+++.|+|+++-+..
T Consensus 132 ~lD~y~~~G~~p~~v~~~Y~~ltG~~~lp-P~walG~~-qsr~~Y~~~~~v~~v~~~~~~~~IP~dvi~lD~dy~~~~~~ 209 (666)
T 3nsx_A 132 DLDIYVIEGENAYDIVKQFRRVIGRSYIP-PKFAFGFG-QSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKD 209 (666)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHCCCCCC-CGGGGSEE-EEETTCCSHHHHHHHHHHHHHTTCCCCEEEECGGGSSTTCT
T ss_pred ceEEEEEcCCCHHHHHHHHHHhhCcccCC-cccccccc-ccccccCCHHHHHHHHHHHHhcCCCcceEEEecHHHHhhcc
Confidence 34455566999999999999988874421 22222322 22235567889999999999999999887765
Q ss_pred ----CCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 306 ----AHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 306 ----~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
..|-|+ ..++++++++.|+++.+.
T Consensus 210 ft~d~~~FPd-p~~mv~~Lh~~G~k~v~~ 237 (666)
T 3nsx_A 210 FTVNEKNFPD-FPEFVKEMKDQELRLIPI 237 (666)
T ss_dssp TCCCTTTCTT-HHHHHHHHHTTTCEEEEE
T ss_pred cccChhhCCC-HHHHHHHHHHcCceEEee
Confidence 245565 778888889999996543
No 169
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=38.41 E-value=21 Score=33.92 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCccc----CCCCCCEEeccCCC
Q 013729 283 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA----ARTPLPVIGVPVRA 357 (437)
Q Consensus 283 ~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~----~~~~~pVi~~p~~~ 357 (437)
....++...|+..|+.++..... .+....++.+++...+++++|++ ||.+-+-.++. ..+..|+..+|.++
T Consensus 42 ~~~~~i~~~L~~~g~~~~~~~t~---~~~~a~~~~~~~~~~~~d~vvv~-GGDGTv~~v~~~l~~~~~~~pl~iIP~GT 116 (337)
T 2qv7_A 42 RELPDALIKLEKAGYETSAYATE---KIGDATLEAERAMHENYDVLIAA-GGDGTLNEVVNGIAEKPNRPKLGVIPMGT 116 (337)
T ss_dssp HHHHHHHHHHHHTTEEEEEEECC---STTHHHHHHHHHTTTTCSEEEEE-ECHHHHHHHHHHHTTCSSCCEEEEEECSS
T ss_pred HHHHHHHHHHHHcCCeEEEEEec---CcchHHHHHHHHhhcCCCEEEEE-cCchHHHHHHHHHHhCCCCCcEEEecCCc
Confidence 55677888899999887766432 22234455555555677766665 44443333332 23567888888864
No 170
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=38.29 E-value=83 Score=28.96 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=52.6
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.|+++|.+-.=-..-+.+.++ ....| ++. +.+.+.++++.+.+...|..+..-.+. -.+++.+.+++
T Consensus 33 ~vlVTGas~gIG~~la~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~ 99 (301)
T 3tjr_A 33 AAVVTGGASGIGLATATEFAR---------RGARL-VLS--DVDQPALEQAVNGLRGQGFDAHGVVCD-VRHLDEMVRLA 99 (301)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHH---------CCCEE-EEE--ECCHHHHHHHHHHHHhcCCceEEEEcc-CCCHHHHHHHH
Confidence 477778775544444444443 22345 333 456777888888888888776554443 45577777776
Q ss_pred hhhhhc--CCeEEEEecccc
Q 013729 318 SSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 318 ~~~~~~--g~~v~i~~ag~~ 335 (437)
++..+. +++++|-+||..
T Consensus 100 ~~~~~~~g~id~lvnnAg~~ 119 (301)
T 3tjr_A 100 DEAFRLLGGVDVVFSNAGIV 119 (301)
T ss_dssp HHHHHHHSSCSEEEECCCCC
T ss_pred HHHHHhCCCCCEEEECCCcC
Confidence 554332 688999888743
No 171
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=38.03 E-value=1.8e+02 Score=25.94 Aligned_cols=84 Identities=17% Similarity=0.039 Sum_probs=50.7
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCC--ChhHHHHhHhhhhhcCCeEEEEeccccccccCcc
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHR--TPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV 342 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr--~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 342 (437)
+..+|+++..+.++ ......+.+.++++|+.+... ..+. .+++-.+.++.+..++++.+|+.......+...+
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~ 81 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVL--EAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNL 81 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEE--ECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEE--cCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHH
Confidence 34577788765544 233444556778888876554 4455 7777777887777788887776543333333333
Q ss_pred cC-CCCCCEEec
Q 013729 343 AA-RTPLPVIGV 353 (437)
Q Consensus 343 ~~-~~~~pVi~~ 353 (437)
.. ....|||.+
T Consensus 82 ~~~~~~iPvV~~ 93 (304)
T 3o1i_D 82 KSWVGNTPVFAT 93 (304)
T ss_dssp HHHTTTSCEEEC
T ss_pred HHHcCCCCEEEe
Confidence 11 146788775
No 172
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=38.02 E-value=42 Score=31.05 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=43.2
Q ss_pred HHHHHHHcCCc----EEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEecc
Q 013729 288 AAKILTMFSVP----HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVP 354 (437)
Q Consensus 288 ~~~~L~~~G~~----~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p 354 (437)
..+.|++.|+. ++..+.++.+.+.....+.+++...+++++++.+.- ..-.+.......||+-+-
T Consensus 29 ~~~~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~t~--aa~a~~~~~~~iPVVf~~ 97 (302)
T 3lkv_A 29 LLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP--TAQALVSATKTIPIVFTA 97 (302)
T ss_dssp HHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEESHH--HHHHHHHHCSSSCEEEEE
T ss_pred HHHHHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcCCH--HHHHHHhhcCCCCeEEEe
Confidence 45677777763 777777888888888888888888888887776421 222223334567877553
No 173
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=37.99 E-value=2.1e+02 Score=25.26 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=51.1
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCc-EEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCccc
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVP-HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 343 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~-~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 343 (437)
+...|+++..+.++ ......+.+.++++|+. +.. ...+..++.-.++++.+..++++-+|... ..+..+
T Consensus 9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~~~~-- 81 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALIS--FSTNSDVKKYQNAIINFENNNVDGIITSA---FTIPPN-- 81 (277)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE--ECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CCCCTT--
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEcc---hHHHHH--
Confidence 45678888765444 23445556777889987 544 45677888777788888888999766654 233222
Q ss_pred CCCCCCEEec
Q 013729 344 ARTPLPVIGV 353 (437)
Q Consensus 344 ~~~~~pVi~~ 353 (437)
.....|||.+
T Consensus 82 ~~~~iPvV~~ 91 (277)
T 3hs3_A 82 FHLNTPLVMY 91 (277)
T ss_dssp CCCSSCEEEE
T ss_pred HhCCCCEEEE
Confidence 2235677765
No 174
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=37.87 E-value=2e+02 Score=25.78 Aligned_cols=62 Identities=15% Similarity=0.004 Sum_probs=36.3
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
.+++++..+.++ ...+..+.+.++++|+.+... ...+.++++..++++.+..++++.+|+..
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~ 69 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISA 69 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECC
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 456566544333 223344455667778776542 24466777777777776677787666543
No 175
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Probab=37.42 E-value=3.4e+02 Score=28.44 Aligned_cols=95 Identities=13% Similarity=0.051 Sum_probs=66.9
Q ss_pred ceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec--------
Q 013729 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS-------- 305 (437)
Q Consensus 234 ~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s-------- 305 (437)
..+-..+..|.|..+++++-.+..+.-.. .|...-|.- ...-+..+.+.+++.++.+++.|+++++-+..
T Consensus 143 g~lD~y~~~G~~~~~v~~~Y~~ltG~p~~-pP~WalG~~-qsr~~y~~~~ev~~v~~~~~~~~IP~dvi~lD~~y~~~~~ 220 (693)
T 2g3m_A 143 DSVEFYVIEGPRIEDVLEKYTELTGKPFL-PPMWAFGYM-ISRYSYYPQDKVVELVDIMQKEGFRVAGVFLDIHYMDSYK 220 (693)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHCCCCC-CCGGGGSEE-EEETTCCSHHHHHHHHHHHHHTTCCEEEEEECGGGSBTTB
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHhCCCCC-CcccccCcc-ccCCcCCCHHHHHHHHHHHHHcCCCcceEEEecceecCCc
Confidence 34555667899999999998888876332 121122322 23335567889999999999999999987754
Q ss_pred -----CCCChhHHHHhHhhhhhcCCeEEEEe
Q 013729 306 -----AHRTPDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 306 -----~hr~p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
.+|-|+ ..++++++++.|+++.+-+
T Consensus 221 dft~d~~~FPd-p~~mv~~Lh~~G~k~~l~i 250 (693)
T 2g3m_A 221 LFTWHPYRFPE-PKKLIDELHKRNVKLITIV 250 (693)
T ss_dssp TTCCCTTTCSC-HHHHHHHHHHTTCEEEEEE
T ss_pred cceEChhhCCC-HHHHHHHHHHCCCEEEEEe
Confidence 245565 6778888899999966543
No 176
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=36.96 E-value=2.2e+02 Score=25.34 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=33.8
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhc--CCeEEEEeccc
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~--g~~v~i~~ag~ 334 (437)
+|.++.-+..+.+.++++.+.+...|..+..-.+. -.+++.+.+++++..++ +++++|-+||.
T Consensus 37 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 101 (262)
T 3ksu_A 37 NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSD-LSNEEEVAKLFDFAEKEFGKVDIAINTVGK 101 (262)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECC-CCSHHHHHHHHHHHHHHHCSEEEEEECCCC
T ss_pred EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 44333323445566777776776666554433222 34566666665544332 56677766653
No 177
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=36.74 E-value=1.1e+02 Score=27.02 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=46.9
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+..=-.+-+...++ ....| ++. +.+.+.++++.+.+...|..+..-.+. -..++.+.+++
T Consensus 9 ~~lVTGas~gIG~aia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~~~~~~~~~~ 75 (247)
T 2jah_A 9 VALITGASSGIGEATARALAA---------EGAAV-AIA--ARRVEKLRALGDELTAAGAKVHVLELD-VADRQGVDAAV 75 (247)
T ss_dssp EEEEESCSSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH---------CCCEE-EEE--ECCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHH
Confidence 366667665433333333332 22244 333 345566777777777767665443332 45577777766
Q ss_pred hhhhh--cCCeEEEEecccc
Q 013729 318 SSAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 318 ~~~~~--~g~~v~i~~ag~~ 335 (437)
++..+ .+++++|-+||..
T Consensus 76 ~~~~~~~g~id~lv~nAg~~ 95 (247)
T 2jah_A 76 ASTVEALGGLDILVNNAGIM 95 (247)
T ss_dssp HHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 54432 3688888888753
No 178
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=36.24 E-value=48 Score=28.80 Aligned_cols=93 Identities=12% Similarity=0.184 Sum_probs=46.4
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHH-cCCcEEEEEecCC-----------CChhHHHHhHhhhhhcCCeEEEEec-ccccc
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVSAH-----------RTPDLMFSYASSAHERGIEIIIAGA-GGAAH 337 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~-~G~~~~~~v~s~h-----------r~p~~~~~~~~~~~~~g~~v~i~~a-g~~~~ 337 (437)
+|++|+||.+.-..-..+++.+.+ +.-.++++++... ..|+.+.++.+..++ .+.+|.+. .=...
T Consensus 4 ~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~--aD~~ii~tPeYn~s 81 (190)
T 3u7r_A 4 TVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEH--SDAVLAITPEYNRS 81 (190)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHT--SSEEEEECCCBTTB
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHh--CCcEEEechhhccc
Confidence 577888886554433344333332 2223555554432 246667777766554 56555544 11122
Q ss_pred ccCcc-------------cCCCCCCEEeccCCCCCCCChhh
Q 013729 338 LPGMV-------------AARTPLPVIGVPVRASALDGLDS 365 (437)
Q Consensus 338 l~~~i-------------~~~~~~pVi~~p~~~~~~~g~~~ 365 (437)
+|+++ .....+||.-+-++.+..+|..+
T Consensus 82 ~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~~a 122 (190)
T 3u7r_A 82 YPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAALA 122 (190)
T ss_dssp CCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTHHH
T ss_pred CCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHHHH
Confidence 22222 12455787665544444555543
No 179
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=36.01 E-value=2.4e+02 Score=25.22 Aligned_cols=83 Identities=7% Similarity=-0.011 Sum_probs=53.4
Q ss_pred CCCeEEEEEccCCC---H-HHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCccc
Q 013729 268 ILPRIGIIMGSDSD---L-PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 343 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~-~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 343 (437)
+...|+++....++ . ..+..+.+.++++|+.+... ..+..++.-.++++.+..++++-+|............+
T Consensus 12 ~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~- 88 (301)
T 3miz_A 12 RSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIA--NTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRIVDPES- 88 (301)
T ss_dssp CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEECCCCC-
T ss_pred CCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEE--eCCCChHHHHHHHHHHHhCCCCEEEEecCCccHHHHHH-
Confidence 44678888765443 3 66777888899999887654 45777877778888888889996655432222222222
Q ss_pred CCCCCCEEec
Q 013729 344 ARTPLPVIGV 353 (437)
Q Consensus 344 ~~~~~pVi~~ 353 (437)
.....|||.+
T Consensus 89 ~~~~iPvV~~ 98 (301)
T 3miz_A 89 GDVSIPTVMI 98 (301)
T ss_dssp TTCCCCEEEE
T ss_pred HhCCCCEEEE
Confidence 2345688765
No 180
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=35.85 E-value=69 Score=27.63 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=48.7
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEE---------------EEEecCCCChhHHHHhHhhhhhcCCeEEEEecccc
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHE---------------VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 335 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~---------------~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~ 335 (437)
+| ++.|..+....+......|..+|.++. +-++|..|...++.+.++.++++|++++..-.-..
T Consensus 49 ~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 127 (200)
T 1vim_A 49 SI-FVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRD 127 (200)
T ss_dssp CE-EEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred EE-EEEEecHHHHHHHHHHHHHHhcCCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 44 555654445666666667777776532 34466677777788888888888988664433222
Q ss_pred ccccCcccCCCCCCEEeccCCC
Q 013729 336 AHLPGMVAARTPLPVIGVPVRA 357 (437)
Q Consensus 336 ~~l~~~i~~~~~~pVi~~p~~~ 357 (437)
+.|.. ...-+|-+|...
T Consensus 128 s~La~-----~ad~~l~~~~~~ 144 (200)
T 1vim_A 128 SSLAK-----MADVVMVVKGKM 144 (200)
T ss_dssp SHHHH-----HCSEEEECCSSC
T ss_pred ChHHH-----hCCEEEEECCcc
Confidence 22322 234566677643
No 181
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=35.65 E-value=86 Score=28.33 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=49.7
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+..=-.+-+.+.++ ....| ++. +.+.+.++++.+.+...|..+....+. -.+++.+.+++
T Consensus 6 ~~lVTGas~GIG~aia~~la~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~ 72 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGV---------AGAKI-LLG--ARRQARIEAIATEIRDAGGTALAQVLD-VTDRHSVAAFA 72 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHH---------TTCEE-EEE--ESSHHHHHHHHHHHHHTTCEEEEEECC-TTCHHHHHHHH
T ss_pred EEEEeCCccHHHHHHHHHHHH---------CCCEE-EEE--ECCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHH
Confidence 366677665433333333332 22345 333 345677888888888887765544333 45577777776
Q ss_pred hhhhhc--CCeEEEEecccc
Q 013729 318 SSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 318 ~~~~~~--g~~v~i~~ag~~ 335 (437)
++..+. +++++|-+||..
T Consensus 73 ~~~~~~~g~iD~lVnnAG~~ 92 (264)
T 3tfo_A 73 QAAVDTWGRIDVLVNNAGVM 92 (264)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 544332 688888888753
No 182
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=35.01 E-value=71 Score=29.43 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=43.3
Q ss_pred ceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHH
Q 013729 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLM 313 (437)
Q Consensus 234 ~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~ 313 (437)
.++.-|++-+.-.-.|..+.... ...+| ++. +.+.+.++++. +++|-++..-.+. -..++.+
T Consensus 29 gKvalVTGas~GIG~aiA~~la~-----------~Ga~V-~i~--~r~~~~l~~~~---~~~g~~~~~~~~D-v~~~~~v 90 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVA-----------EGARV-FIT--GRRKDVLDAAI---AEIGGGAVGIQAD-SANLAEL 90 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHH-----------TTCEE-EEE--ESCHHHHHHHH---HHHCTTCEEEECC-TTCHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHH-----------CCCEE-EEE--ECCHHHHHHHH---HHcCCCeEEEEec-CCCHHHH
Confidence 35544444444445555544322 22355 443 34556666554 4456554332222 4567777
Q ss_pred HHhHhhhhh--cCCeEEEEeccc
Q 013729 314 FSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 314 ~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
.+++++..+ .+++++|-.||.
T Consensus 91 ~~~~~~~~~~~G~iDiLVNNAG~ 113 (273)
T 4fgs_A 91 DRLYEKVKAEAGRIDVLFVNAGG 113 (273)
T ss_dssp HHHHHHHHHHHSCEEEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 777665433 357788888865
No 183
>1v9c_A Precorrin-8X methyl mutase; alpha-beta WIND, doubly wound sheet, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.20A {Thermus thermophilus} SCOP: c.23.17.1
Probab=34.95 E-value=70 Score=28.54 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEec--------CCCChhHHHHhHhhhhh----cCCeEEEEeccccc----cccCcc
Q 013729 279 DSDLPVMKDAAKILTMFSVPHEVRIVS--------AHRTPDLMFSYASSAHE----RGIEIIIAGAGGAA----HLPGMV 342 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~~~~v~s--------~hr~p~~~~~~~~~~~~----~g~~v~i~~ag~~~----~l~~~i 342 (437)
|..+-...-..+.|..+|.++.+.+.. ..+++.....+ +.+.+ .| .+++. |.++ +|..+|
T Consensus 72 Dv~Mv~aGI~~~~l~~~g~~v~C~i~d~~v~~~Ak~~g~TRsaaa~-~~~~~~~~~~~-aI~aI--GNAPTAL~~Lleli 147 (218)
T 1v9c_A 72 DARMIACGLNPERLRLFGNEVVELLAHPEVVARAKATGGTRAEAAV-AYAWEKGLLDG-AIVGV--GNAPTFLLALVEAI 147 (218)
T ss_dssp SCHHHHHHSCHHHHGGGTCCEEEGGGCHHHHHC------CHHHHHH-HHHHTTTTTSS-CEEEE--SSCTTTTHHHHHHH
T ss_pred ecHHHHHHhCHHHHHHcCCeeEEECCCcchHHHHHHcCCCHHHHHH-HHHHHhccCCC-cEEEE--eCcHHHHHHHHHHH
Confidence 443333333356778888887666421 11222212222 22222 23 33333 3333 455666
Q ss_pred c-CCCCCCEEeccCCCCCCCCh-hhHHHhhhCCCCCceEEEE
Q 013729 343 A-ARTPLPVIGVPVRASALDGL-DSLLSIVQMPRGVPVATVA 382 (437)
Q Consensus 343 ~-~~~~~pVi~~p~~~~~~~g~-~~l~~~~~~~~gvp~~tv~ 382 (437)
. +-.+..|||+|++.- |. .| -..+ +..+||++|+.
T Consensus 148 ~g~~~PalVIG~PVGFV---gaaES-Ke~L-~~~~vP~I~~~ 184 (218)
T 1v9c_A 148 RQGARPALVLGMPVGFV---NVLEA-KRAL-MEAPVPWIVTE 184 (218)
T ss_dssp HTTCCCSEEEECCCSSS---SHHHH-HHHH-TTSSSCEEEEC
T ss_pred cCCCCCcEEEEeCCCcc---CHHHH-HHHH-HhCCCCEEEEe
Confidence 5 235677999999621 22 11 0111 24599999875
No 184
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=34.81 E-value=1.6e+02 Score=26.29 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=48.4
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
|+.+--|..+.++.+.++.+ ..++++++.- .+-.+.+..+. +-+|++++... -.++++....++
T Consensus 85 VV~I~vs~~Dil~aL~~a~~---------~~~kIavVg~-~~~~~~~~~i~---~ll~~~i~~~~---~~~~ee~~~~i~ 148 (225)
T 2pju_A 85 VILIKPSGYDVLQFLAKAGK---------LTSSIGVVTY-QETIPALVAFQ---KTFNLRLDQRS---YITEEDARGQIN 148 (225)
T ss_dssp EEEECCCHHHHHHHHHHTTC---------TTSCEEEEEE-SSCCHHHHHHH---HHHTCCEEEEE---ESSHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHh---------hCCcEEEEeC-chhhhHHHHHH---HHhCCceEEEE---eCCHHHHHHHHH
Confidence 44455555555555555443 1246767653 33344444333 45788876654 467888999999
Q ss_pred hhhhcCCeEEEEe
Q 013729 319 SAHERGIEIIIAG 331 (437)
Q Consensus 319 ~~~~~g~~v~i~~ 331 (437)
++++.|++++|..
T Consensus 149 ~l~~~G~~vVVG~ 161 (225)
T 2pju_A 149 ELKANGTEAVVGA 161 (225)
T ss_dssp HHHHTTCCEEEES
T ss_pred HHHHCCCCEEECC
Confidence 9999999998864
No 185
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=34.79 E-value=2.1e+02 Score=26.45 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=38.9
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 269 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 269 ~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
...|+++....++ ...+..+.+.+++.|+.+... ..+..++...++++.+..++++-+|...
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiI~~~ 130 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIIT--NSNEDATTMSGSLEFLTSHGVDGIICVP 130 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEE--ECTTCHHHHHHHHHHHHHTTCSCEEECC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE--eCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3567787754433 234445566778899887654 3456677666777777777888655543
No 186
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=34.77 E-value=1e+02 Score=27.99 Aligned_cols=84 Identities=12% Similarity=0.016 Sum_probs=49.7
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
++++|.+..=-.+-+.+.++ ....| ++. +.+.+.++++.+.+...|..+..-.+. -.+++.+.++++
T Consensus 31 ~lVTGas~GIG~aia~~la~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~~ 97 (283)
T 3v8b_A 31 ALITGAGSGIGRATALALAA---------DGVTV-GAL--GRTRTEVEEVADEIVGAGGQAIALEAD-VSDELQMRNAVR 97 (283)
T ss_dssp EEEESCSSHHHHHHHHHHHH---------TTCEE-EEE--ESSHHHHHHHHHHHTTTTCCEEEEECC-TTCHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHH
Confidence 56677665433333333332 22345 333 355677888888887777775544333 456777777765
Q ss_pred hhhhc--CCeEEEEecccc
Q 013729 319 SAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 319 ~~~~~--g~~v~i~~ag~~ 335 (437)
+..+. +++++|-+||..
T Consensus 98 ~~~~~~g~iD~lVnnAg~~ 116 (283)
T 3v8b_A 98 DLVLKFGHLDIVVANAGIN 116 (283)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHhCCCCEEEECCCCC
Confidence 54332 688888888753
No 187
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=34.21 E-value=1.1e+02 Score=27.51 Aligned_cols=85 Identities=12% Similarity=0.119 Sum_probs=47.5
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+..=-.+-+.+.++ ....| ++. +.+.+.++++.+.+...|..+....+. -..++.+.+++
T Consensus 23 ~vlVTGas~gIG~aia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~ 89 (273)
T 1ae1_A 23 TALVTGGSKGIGYAIVEELAG---------LGARV-YTC--SRNEKELDECLEIWREKGLNVEGSVCD-LLSRTERDKLM 89 (273)
T ss_dssp EEEEESCSSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEEECCcchHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhcCCceEEEECC-CCCHHHHHHHH
Confidence 366777665544443333332 22244 333 344566677777777777665443333 45567677766
Q ss_pred hhhhh---cCCeEEEEecccc
Q 013729 318 SSAHE---RGIEIIIAGAGGA 335 (437)
Q Consensus 318 ~~~~~---~g~~v~i~~ag~~ 335 (437)
++..+ .+++++|-+||..
T Consensus 90 ~~~~~~~~g~id~lv~nAg~~ 110 (273)
T 1ae1_A 90 QTVAHVFDGKLNILVNNAGVV 110 (273)
T ss_dssp HHHHHHTTSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCcEEEECCCCC
Confidence 54433 3688888888753
No 188
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=33.96 E-value=81 Score=26.99 Aligned_cols=59 Identities=12% Similarity=0.234 Sum_probs=35.8
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEE--------------------EEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHE--------------------VRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~--------------------~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
+| ++.|..+....+......|..+|+++. +-++|..|...++.+.++.++++|++++..
T Consensus 47 ~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~I 125 (201)
T 3fxa_A 47 KI-VVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGV 125 (201)
T ss_dssp CE-EEECCTHHHHHHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEE
T ss_pred cE-EEEEecHHHHHHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEE
Confidence 44 555555556666666666666666543 233455565666677777777777775544
No 189
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=33.76 E-value=1.2e+02 Score=26.92 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=44.5
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
++++|.+--=-.+-+.+.++ ....| ++. +.+.+.+.++.+.+...|..+....+. -..++.+.++++
T Consensus 12 vlVTGas~giG~~ia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~ 78 (260)
T 2ae2_A 12 ALVTGGSRGIGYGIVEELAS---------LGASV-YTC--SRNQKELNDCLTQWRSKGFKVEASVCD-LSSRSERQELMN 78 (260)
T ss_dssp EEEESCSSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHTTCEEEEEECC-TTCHHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHHH
Confidence 66677665433333333332 12244 332 344566666666666666554433332 345666666665
Q ss_pred hhhh---cCCeEEEEeccc
Q 013729 319 SAHE---RGIEIIIAGAGG 334 (437)
Q Consensus 319 ~~~~---~g~~v~i~~ag~ 334 (437)
+..+ .+++++|-.||.
T Consensus 79 ~~~~~~~g~id~lv~~Ag~ 97 (260)
T 2ae2_A 79 TVANHFHGKLNILVNNAGI 97 (260)
T ss_dssp HHHHHTTTCCCEEEECCCC
T ss_pred HHHHHcCCCCCEEEECCCC
Confidence 4332 357888888864
No 190
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=33.66 E-value=1.6e+02 Score=28.77 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=41.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
..|.|+..++.....+.++++.|+..|+.++.... .++ +.+-++.++..|++..+++.
T Consensus 333 ~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~--~~~---~~~~~~~a~~~g~~~~iiiG 390 (434)
T 1wu7_A 333 KSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIM--ERG---LSAQLKYASAIGADFAVIFG 390 (434)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCS--CCC---HHHHHHHHHHTTCSEEEEEE
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecC--CCC---HHHHHHHHHHCCCCEEEEEC
Confidence 45656666667789999999999999999877631 233 44445556788999666553
No 191
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=33.65 E-value=1.3e+02 Score=26.78 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEeccc
Q 013729 280 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
.+.+.+.++.+.+...|..+..-.+. -..++.+.+++++..+ .+++++|-+||.
T Consensus 39 r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~id~lv~nAg~ 94 (262)
T 1zem_A 39 MNREALEKAEASVREKGVEARSYVCD-VTSEEAVIGTVDSVVRDFGKIDFLFNNAGY 94 (262)
T ss_dssp SCHHHHHHHHHHHHTTTSCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEec-CCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 34555666666666666554433332 3456666665544322 257788877764
No 192
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=33.36 E-value=98 Score=27.18 Aligned_cols=54 Identities=7% Similarity=0.108 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhc--CCeEEEEeccc
Q 013729 280 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~--g~~v~i~~ag~ 334 (437)
.+.+..+++.+.++..|.++..-.+. -..++.+.+++++..+. +++++|-+||.
T Consensus 37 r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~id~li~~Ag~ 92 (247)
T 3lyl_A 37 TSQASAEKFENSMKEKGFKARGLVLN-ISDIESIQNFFAEIKAENLAIDILVNNAGI 92 (247)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHTTCCCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEec-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45566777777777777775544333 45566677776554332 46777777764
No 193
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=33.23 E-value=89 Score=27.86 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEeccc
Q 013729 280 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
.+.+.++++.+.+...|..+..-.+. -..++.+.+++++..+ .+++++|-+||.
T Consensus 38 r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 93 (257)
T 3imf_A 38 RTKEKLEEAKLEIEQFPGQILTVQMD-VRNTDDIQKMIEQIDEKFGRIDILINNAAG 93 (257)
T ss_dssp SCHHHHHHHHHHHCCSTTCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45566666666666666554433222 3445666666554332 257777777763
No 194
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
Probab=33.10 E-value=2.5e+02 Score=30.55 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=67.2
Q ss_pred CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec-------
Q 013729 233 QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS------- 305 (437)
Q Consensus 233 ~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s------- 305 (437)
+..+=..+..|.+.++++++-.+..+.-.. .|...-|.- ...-+..+.+.+.++++.+++.|+|+++-+..
T Consensus 257 gg~lD~y~~~Gptp~~Vv~~Y~~ltG~p~l-pP~WalG~~-qsr~~Y~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~~~~ 334 (875)
T 3l4y_A 257 GGILDFYVFLGNTPEQVVQEYLELIGRPAL-PSYWALGFH-LSRYEYGTLDNMREVVERNRAAQLPYDVQHADIDYMDER 334 (875)
T ss_dssp SSCEEEEEEEESSHHHHHHHHHHHHCCCCC-CCGGGGSEE-ECCSCCCSHHHHHHHHHHHHHTTCCCCEEEECGGGSBTT
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHhCCCCC-CCccccccc-eeccCCCCHHHHHHHHHHHHhcCCCCceEEEccchhcCC
Confidence 445566667899999999999999887432 122222322 11223456789999999999999999988753
Q ss_pred ------CCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 306 ------AHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 306 ------~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
..|-|+ ..++++++++.|+++.+-
T Consensus 335 ~dFt~D~~~FPd-p~~mv~~Lh~~G~k~v~~ 364 (875)
T 3l4y_A 335 RDFTYDSVDFKG-FPEFVNELHNNGQKLVII 364 (875)
T ss_dssp BTTCCCTTTTTT-HHHHHHHHHHTTCEEEEE
T ss_pred CceeeChhhCCC-HHHHHHHHHHCCCEEEEE
Confidence 235565 778888889999996654
No 195
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=32.81 E-value=82 Score=29.03 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=46.7
Q ss_pred HHHcCCcEEEEE-ec--CCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEec
Q 013729 292 LTMFSVPHEVRI-VS--AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 353 (437)
Q Consensus 292 L~~~G~~~~~~v-~s--~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~ 353 (437)
.+.+|++..... .+ ..=+|.++.++.+.+++++++++.+-...++.+...|+..+-.+|+.+
T Consensus 188 ~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l 252 (284)
T 2prs_A 188 EKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTL 252 (284)
T ss_dssp HHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEEEC
T ss_pred HHHCCCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEe
Confidence 367898854332 22 345678899999888999999998877777778888888888888765
No 196
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=32.77 E-value=1.7e+02 Score=26.05 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=39.7
Q ss_pred CCCeEEEEEcc-----CCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 268 ILPRIGIIMGS-----DSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 268 ~~~~V~ii~gs-----~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+...|+++... .++ ......+.+.++++|+.+.. ...+..++...++++.+..++++-+|...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~vdgiIi~~ 77 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYM--STGETEEEIFNGVVKMVQGRQIGGIILLY 77 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEE--CCCCSHHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeC
Confidence 44678787655 333 23444556677888876554 45566666666677777777888666543
No 197
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=32.74 E-value=2.3e+02 Score=24.17 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 243 GSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSD--SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 243 G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~--sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
+.+..+++..+...++..+. .....+|.+++.++ .|...+.++++.+++.|+.+.+--.+..-..+.+..|.+
T Consensus 83 ~t~l~~aL~~A~~~l~~~~~---~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~l~~la~ 157 (192)
T 2x5n_A 83 NAKFGDGIQIAQLALKHREN---KIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQNESALQHFID 157 (192)
T ss_dssp CCCHHHHHHHHHHHHHTCSC---TTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC---CHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhccc---cCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHH
Confidence 56788888888887765321 01223444554432 356778889999999999976543343321112556654
No 198
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=32.73 E-value=1.8e+02 Score=28.36 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=20.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhHHH
Q 013729 390 GLLAVRMLGFGDADLRARMQQYMEDMRDD 418 (437)
Q Consensus 390 a~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 418 (437)
+-.++..+++....+.+.++.+|......
T Consensus 131 a~~~L~~lg~~~~~~~~~~~~~r~~~~~~ 159 (413)
T 3l9w_A 131 GRLALESLGLGPYEARERADVFRRFNIQM 159 (413)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhHHHH
Confidence 34466778888888888888887654444
No 199
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=32.47 E-value=1e+02 Score=27.43 Aligned_cols=55 Identities=11% Similarity=0.020 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhc--CCeEEEEecccc
Q 013729 280 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~--g~~v~i~~ag~~ 335 (437)
.+.+.++++.+.+...|.++..-.+. -..++.+.+++++..++ +++++|-+||..
T Consensus 44 r~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~id~lv~nAg~~ 100 (256)
T 3gaf_A 44 LKSEGAEAVAAAIRQAGGKAIGLECN-VTDEQHREAVIKAALDQFGKITVLVNNAGGG 100 (256)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 45667777777777777665543332 45566666666544332 678888888643
No 200
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=32.43 E-value=2.8e+02 Score=24.95 Aligned_cols=58 Identities=9% Similarity=-0.031 Sum_probs=28.7
Q ss_pred EEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHH-HHcCCcEEEEEe
Q 013729 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKIL-TMFSVPHEVRIV 304 (437)
Q Consensus 237 G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L-~~~G~~~~~~v~ 304 (437)
..|+..+.+.+.+.+-+++..+ ..+.+..+...-+|.+.++.+.+.. +++| ++|.=|.
T Consensus 32 a~Vv~~~~~~~~~~~~~~~i~~---------~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G-~iDiLVN 90 (254)
T 4fn4_A 32 SIVVAVELLEDRLNQIVQELRG---------MGKEVLGVKADVSKKKDVEEFVRRTFETYS-RIDVLCN 90 (254)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH---------TTCCEEEEECCTTSHHHHHHHHHHHHHHHS-CCCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHh---------cCCcEEEEEccCCCHHHHHHHHHHHHHHcC-CCCEEEE
Confidence 4566667766544433332211 1223434555566666666665443 4455 4444443
No 201
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=32.43 E-value=1.4e+02 Score=29.25 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=40.0
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEe
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
..|.++..++.....+.+++..|++.|+.+++. +..-..+.+-++.+...|++..+++
T Consensus 367 ~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~----~~~~~~l~~q~k~A~~~g~~~~vii 424 (464)
T 4g84_A 367 TQVLVASAQKKLLEERLKLVSELWDAGIKAELL----YKKNPKLLNQLQYCEEAGIPLVAII 424 (464)
T ss_dssp CCEEEECSSSSCHHHHHHHHHHHHHTTCCEECC----SCSSCCHHHHHHHHHHHTCCEEEEC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEE----eCCCCCHHHHHHHHHHCCCCEEEEE
Confidence 356566666777888999999999999998875 2211124444556677899965554
No 202
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=32.42 E-value=1e+02 Score=27.54 Aligned_cols=84 Identities=12% Similarity=0.140 Sum_probs=46.0
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccc-cccccCccc
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGMVA 343 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~i~ 343 (437)
+..+|+++....++ ......+.+.++++|+.+... ....+++...+.++.+..++++.+|..... ...+...+.
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~ 83 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILG--NAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLE 83 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEE--ECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHH
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE--cCCCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHH
Confidence 34567777654333 223344456677788776543 456677766667766667788866654322 122333332
Q ss_pred CCCCCCEEec
Q 013729 344 ARTPLPVIGV 353 (437)
Q Consensus 344 ~~~~~pVi~~ 353 (437)
.....|||.+
T Consensus 84 ~~~~iPvV~~ 93 (289)
T 1dbq_A 84 EYRHIPMVVM 93 (289)
T ss_dssp HTTTSCEEEE
T ss_pred hccCCCEEEE
Confidence 2235677765
No 203
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=32.34 E-value=1.2e+02 Score=27.01 Aligned_cols=84 Identities=13% Similarity=0.226 Sum_probs=51.1
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.|+++|.+..=-..-+.+.++ ....| ++. +.+.+.++++.+.+...|..+....+. -..++.+.+++
T Consensus 31 ~vlITGas~gIG~~la~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~ 97 (262)
T 3rkr_A 31 VAVVTGASRGIGAAIARKLGS---------LGARV-VLT--ARDVEKLRAVEREIVAAGGEAESHACD-LSHSDAIAAFA 97 (262)
T ss_dssp EEEESSTTSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHTTCEEEEEECC-TTCHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHH---------CCCEE-EEE--ECCHHHHHHHHHHHHHhCCceeEEEec-CCCHHHHHHHH
Confidence 467777766544444444432 22345 333 456777888888888888776555443 45567777766
Q ss_pred hhhhh--cCCeEEEEeccc
Q 013729 318 SSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~--~g~~v~i~~ag~ 334 (437)
++..+ ..++++|-+||.
T Consensus 98 ~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 98 TGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHHHSCCSEEEECCCC
T ss_pred HHHHHhcCCCCEEEECCCc
Confidence 54322 257888888875
No 204
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=32.04 E-value=1.3e+02 Score=24.16 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCCc-EEEEEecCCCChhHHHHhHhh-hhhcCCeEEEEeccccccc
Q 013729 283 PVMKDAAKILTMFSVP-HEVRIVSAHRTPDLMFSYASS-AHERGIEIIIAGAGGAAHL 338 (437)
Q Consensus 283 ~~~~~~~~~L~~~G~~-~~~~v~s~hr~p~~~~~~~~~-~~~~g~~v~i~~ag~~~~l 338 (437)
..+.++.+.+...|++ ++..+.. .+.|. ..+++. +++.+++.++.++.+...+
T Consensus 79 ~~l~~~~~~~~~~g~~~~~~~v~~-~g~~~--~~I~~~~a~~~~~DlIV~G~~g~~~~ 133 (156)
T 3fg9_A 79 DVVAEYVQLAEQRGVNQVEPLVYE-GGDVD--DVILEQVIPEFKPDLLVTGADTEFPH 133 (156)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEE-CSCHH--HHHHHTHHHHHCCSEEEEETTCCCTT
T ss_pred HHHHHHHHHHHHcCCCceEEEEEe-CCCHH--HHHHHHHHHhcCCCEEEECCCCCCcc
Confidence 3445555667788994 7776653 25553 445555 5778899888877444333
No 205
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=32.02 E-value=1.5e+02 Score=26.37 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEeccc
Q 013729 279 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
..+.+.++++.+.+...|..+..-.+. -..++.+.+++++..+ ..++++|-+||.
T Consensus 36 ~r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 92 (258)
T 3oid_A 36 ARSKKAALETAEEIEKLGVKVLVVKAN-VGQPAKIKEMFQQIDETFGRLDVFVNNAAS 92 (258)
T ss_dssp SSCHHHHHHHHHHHHTTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 345677777777787777765544333 4567777776654432 257788888764
No 206
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=31.73 E-value=67 Score=22.91 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 279 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
...-+.+..+...|+++|++++...+.....+....++.
T Consensus 11 ~~~Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~ 49 (89)
T 3msz_A 11 RNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEM 49 (89)
T ss_dssp CTTCHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHH
T ss_pred cCCChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHH
Confidence 345699999999999999998776555444333334443
No 207
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=31.68 E-value=1.3e+02 Score=27.15 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=47.7
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+.-=-..-+...++ ....| ++. +.+.+.++++.+.+...|..+....+. -..++.+.+++
T Consensus 24 ~vlVTGas~gIG~~ia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~~~~~v~~~~ 90 (277)
T 2rhc_B 24 VALVTGATSGIGLEIARRLGK---------EGLRV-FVC--ARGEEGLRTTLKELREAGVEADGRTCD-VRSVPEIEALV 90 (277)
T ss_dssp EEEEETCSSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhcCCceEEEECC-CCCHHHHHHHH
Confidence 467777775544443443332 22345 333 345566777777777777665443333 35567677766
Q ss_pred hhhhh--cCCeEEEEeccc
Q 013729 318 SSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~--~g~~v~i~~ag~ 334 (437)
++..+ .+++++|-+||.
T Consensus 91 ~~~~~~~g~iD~lv~~Ag~ 109 (277)
T 2rhc_B 91 AAVVERYGPVDVLVNNAGR 109 (277)
T ss_dssp HHHHHHTCSCSEEEECCCC
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 54332 258888888874
No 208
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=31.57 E-value=2.1e+02 Score=26.75 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccc
Q 013729 282 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG 334 (437)
Q Consensus 282 ~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~ 334 (437)
...-..++..++++|++.-.+.....++.+.+.+++..+.+.|++=+.+..|-
T Consensus 57 r~~t~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLaLrGD 109 (310)
T 3apt_A 57 RERSVAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGD 109 (310)
T ss_dssp HHHHHHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred chhHHHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 33445566667789999888888889999999999999999999966666643
No 209
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=31.31 E-value=1.7e+02 Score=26.94 Aligned_cols=63 Identities=6% Similarity=0.060 Sum_probs=43.0
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+...|+++....++ ...+..+.+.+.++|+.+... ..+..+++-.++++.+..++++-+|...
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdGiIi~~ 126 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIG--NSHYDAGQELQLLRAYLQHRPDGVLITG 126 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEE--eCCCChHHHHHHHHHHHcCCCCEEEEeC
Confidence 34567787654333 456667778888999876543 5577888778888877788888665543
No 210
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=31.23 E-value=2.5e+02 Score=25.03 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=35.1
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCC--CChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAH--RTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h--r~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
.+|+++..+.++ ......+.+.++++|+.+... ... .++++..+.++.+..++++.+|+..
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 69 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQIL--APPGANDVPKQVQFIESALATYPSGIATTI 69 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEE--CCSSSCCHHHHHHHHHHHHHTCCSEEEECC
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEE--CCCCcCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 456666544333 223334445667777765544 333 5677767777777777777666543
No 211
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=31.20 E-value=2.3e+02 Score=23.75 Aligned_cols=71 Identities=14% Similarity=0.037 Sum_probs=41.1
Q ss_pred CCCeEEEEEccCC------------CHHHHHHHHHHHHHcCCcEE-EEEecCCCChhHHHHhHhhh-hhcCCeEEEEecc
Q 013729 268 ILPRIGIIMGSDS------------DLPVMKDAAKILTMFSVPHE-VRIVSAHRTPDLMFSYASSA-HERGIEIIIAGAG 333 (437)
Q Consensus 268 ~~~~V~ii~gs~s------------D~~~~~~~~~~L~~~G~~~~-~~v~s~hr~p~~~~~~~~~~-~~~g~~v~i~~ag 333 (437)
++-+++||+.||+ |.. ..-+++.|.++|+++. .+++. =.++.+.+-+.+. ....++++|...|
T Consensus 14 ~~~~v~iitvsd~~~~~~~~~g~i~D~n-g~~L~~~L~~~G~~v~~~~iV~--Dd~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 14 KSLNFYVITISTSRYEKLLKKEPIVDES-GDIIKQLLIENGHKIIGYSLVP--DDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHH-HHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCEEEEEEEcCCCccccccCCCCCcch-HHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 3457888887762 322 3346788999999963 44332 2344455444332 2345788888776
Q ss_pred ccccccCc
Q 013729 334 GAAHLPGM 341 (437)
Q Consensus 334 ~~~~l~~~ 341 (437)
....--++
T Consensus 91 ~g~~~~D~ 98 (178)
T 3iwt_A 91 TGYSPTDI 98 (178)
T ss_dssp CSSSTTCC
T ss_pred cccCCCCc
Confidence 65444343
No 212
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=31.07 E-value=79 Score=28.65 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=48.6
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+..=-..-+.+.++ ....| ++. +.+.+.+.+..+.+...|..+....+. -..++.+.+++
T Consensus 28 ~~lVTGas~gIG~aia~~la~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~ 94 (271)
T 4ibo_A 28 TALVTGSSRGLGRAMAEGLAV---------AGARI-LIN--GTDPSRVAQTVQEFRNVGHDAEAVAFD-VTSESEIIEAF 94 (271)
T ss_dssp EEEETTCSSHHHHHHHHHHHH---------TTCEE-EEC--CSCHHHHHHHHHHHHHTTCCEEECCCC-TTCHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhcCCceEEEEcC-CCCHHHHHHHH
Confidence 356677665433333333332 22344 333 456777888888888888765443222 34566677766
Q ss_pred hhhhhc--CCeEEEEeccc
Q 013729 318 SSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~~--g~~v~i~~ag~ 334 (437)
++..++ +++++|-+||.
T Consensus 95 ~~~~~~~g~iD~lv~nAg~ 113 (271)
T 4ibo_A 95 ARLDEQGIDVDILVNNAGI 113 (271)
T ss_dssp HHHHHHTCCCCEEEECCCC
T ss_pred HHHHHHCCCCCEEEECCCC
Confidence 544332 57888888864
No 213
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=31.00 E-value=1.1e+02 Score=28.73 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccC------CCCCCEEeccCC
Q 013729 283 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA------RTPLPVIGVPVR 356 (437)
Q Consensus 283 ~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~------~~~~pVi~~p~~ 356 (437)
....++.+.|++.|++++..... .+....++.+++...+++++|++ ||.+-+-.++.+ ....|+-.+|.+
T Consensus 44 ~~~~~i~~~l~~~g~~~~~~~t~---~~~~~~~~~~~~~~~~~d~vvv~-GGDGTl~~v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 44 LPLREAIMLLREEGMTIHVRVTW---EKGDAARYVEEARKFGVATVIAG-GGDGTINEVSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECC---STTHHHHHHHHHHHHTCSEEEEE-ESHHHHHHHHHHHHHCCSSCCCEEEEEECS
T ss_pred chHHHHHHHHHHcCCcEEEEEec---CcchHHHHHHHHHhcCCCEEEEE-ccchHHHHHHHHHhhcccCCCCeEEEecCc
Confidence 55677888899999988766432 12234444444444567766654 454444444332 345576667875
Q ss_pred C
Q 013729 357 A 357 (437)
Q Consensus 357 ~ 357 (437)
+
T Consensus 120 t 120 (332)
T 2bon_A 120 T 120 (332)
T ss_dssp S
T ss_pred C
Confidence 3
No 214
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=30.57 E-value=1.2e+02 Score=28.60 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=62.6
Q ss_pred CCCeEEEEEccCC-CHHHHHHHHHHHHHcCCcEEEEEec------CCCChh-HHHHhHhhhhhcCCeEEEEecccc--cc
Q 013729 268 ILPRIGIIMGSDS-DLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGGA--AH 337 (437)
Q Consensus 268 ~~~~V~ii~gs~s-D~~~~~~~~~~L~~~G~~~~~~v~s------~hr~p~-~~~~~~~~~~~~g~~v~i~~ag~~--~~ 337 (437)
+..+|+||+-|.. +...++.+.+.|+++|+++...-.- ..++++ +.+++.+-+.+..++++++..||. +.
T Consensus 16 ~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyga~r 95 (311)
T 1zl0_A 16 IDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYGCGQ 95 (311)
T ss_dssp CCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSCGGG
T ss_pred CcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCcCHHH
Confidence 4457989987653 5677888899999999998754110 122443 334445555677888888888764 45
Q ss_pred ccCcc-----cCCCCCCEEeccCCCCCCCChhhHHHhhhCCCCC
Q 013729 338 LPGMV-----AARTPLPVIGVPVRASALDGLDSLLSIVQMPRGV 376 (437)
Q Consensus 338 l~~~i-----~~~~~~pVi~~p~~~~~~~g~~~l~~~~~~~~gv 376 (437)
|.+.+ +....++++| ...+.+|+-.+.-- |+
T Consensus 96 lLp~LD~~~i~~a~PK~~iG-------ySDiTaL~~al~~~-G~ 131 (311)
T 1zl0_A 96 LLPGLDWGRLQAASPRPLIG-------FSDISVLLSAFHRH-GL 131 (311)
T ss_dssp GTTTCCHHHHHHSCCCCEEE-------CGGGHHHHHHHHHT-TC
T ss_pred HhhccchhhhhccCCCEEEE-------EchhHHHHHHHHHc-CC
Confidence 55543 2114566666 23456677666555 74
No 215
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=30.54 E-value=1.8e+02 Score=25.48 Aligned_cols=46 Identities=13% Similarity=-0.051 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcC-CeEEEEe
Q 013729 286 KDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERG-IEIIIAG 331 (437)
Q Consensus 286 ~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g-~~v~i~~ 331 (437)
..+.+.++++|+.+.......+.++++-.+.++.+..++ ++.+|..
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~ 66 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILA 66 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred HHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 334445555665544332213445554445555555555 5544443
No 216
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=30.30 E-value=1.1e+02 Score=27.30 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=45.9
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcC-CcEEEEEecCCCChhHHHHh
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFS-VPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G-~~~~~~v~s~hr~p~~~~~~ 316 (437)
.++++|.+..=-..-+.+.++ ....| ++. +.+.+.++++.+.++..| -++..-.+. -..++.+.++
T Consensus 12 ~vlVTGas~gIG~aia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~D-v~~~~~v~~~ 78 (262)
T 3pk0_A 12 SVVVTGGTKGIGRGIATVFAR---------AGANV-AVA--GRSTADIDACVADLDQLGSGKVIGVQTD-VSDRAQCDAL 78 (262)
T ss_dssp EEEETTCSSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHTTSSSCEEEEECC-TTSHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhhCCCcEEEEEcC-CCCHHHHHHH
Confidence 356666655433333333332 22345 333 345677777777777766 344333222 3456666666
Q ss_pred Hhhhhhc--CCeEEEEecccc
Q 013729 317 ASSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 317 ~~~~~~~--g~~v~i~~ag~~ 335 (437)
+++..++ +++++|-+||..
T Consensus 79 ~~~~~~~~g~id~lvnnAg~~ 99 (262)
T 3pk0_A 79 AGRAVEEFGGIDVVCANAGVF 99 (262)
T ss_dssp HHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHhCCCCEEEECCCCC
Confidence 6544332 688888888743
No 217
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=30.27 E-value=2.5e+02 Score=23.76 Aligned_cols=84 Identities=11% Similarity=0.127 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCcEEE-EEecCCCChhHHHHhHhhhhhc-CCeEEEEeccccccccCcccCCCCCCEEeccCCCCCCCCh
Q 013729 286 KDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHER-GIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGL 363 (437)
Q Consensus 286 ~~~~~~L~~~G~~~~~-~v~s~hr~p~~~~~~~~~~~~~-g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~ 363 (437)
.-++..|+++|+.+.- .++ .=+++.+.+.++++-++ +++++|+..|.+..--|+... ....+++ ..+.|+
T Consensus 43 ~~L~~~l~~~G~~v~~~~iv--~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t~e-al~~~~~-----~~l~G~ 114 (178)
T 2pjk_A 43 DIIKQLLIENGHKIIGYSLV--PDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVE-TIRKLFD-----REIEGF 114 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEE--CSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHH-HHGGGCS-----EECHHH
T ss_pred HHHHHHHHHCCCEEEEEEEe--CCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcchHH-HHHHHhc-----ccCcch
Confidence 3456788999998643 333 23466677766655444 689888877655443343211 0001111 112244
Q ss_pred hhHHHhhhCCC---CCc
Q 013729 364 DSLLSIVQMPR---GVP 377 (437)
Q Consensus 364 ~~l~~~~~~~~---gvp 377 (437)
.-+++.++|.+ |-|
T Consensus 115 ~~~~~~v~~~p~~~G~p 131 (178)
T 2pjk_A 115 SDVFRLVSFNDPEVKAA 131 (178)
T ss_dssp HHHHHHHHHTSTTTGGG
T ss_pred HHHhheeeccCCCCCCc
Confidence 44577777755 655
No 218
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=30.24 E-value=96 Score=28.13 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=47.7
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+..=-.+-+.+.++ ....| ++.+ .+.+.++++.+.+...|..+..-.+. -.+++.+.+++
T Consensus 34 ~~lVTGas~GIG~aia~~la~---------~G~~V-~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D-l~d~~~v~~~~ 100 (276)
T 3r1i_A 34 RALITGASTGIGKKVALAYAE---------AGAQV-AVAA--RHSDALQVVADEIAGVGGKALPIRCD-VTQPDQVRGML 100 (276)
T ss_dssp EEEEESTTSHHHHHHHHHHHH---------TTCEE-EEEE--SSGGGGHHHHHHHHHTTCCCEEEECC-TTCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHH---------CCCEE-EEEe--CCHHHHHHHHHHHHhcCCeEEEEEcC-CCCHHHHHHHH
Confidence 366677665433333333332 22345 3332 34456677777777777665443332 35567777776
Q ss_pred hhhhhc--CCeEEEEecccc
Q 013729 318 SSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 318 ~~~~~~--g~~v~i~~ag~~ 335 (437)
++..++ +++++|-+||..
T Consensus 101 ~~~~~~~g~iD~lvnnAg~~ 120 (276)
T 3r1i_A 101 DQMTGELGGIDIAVCNAGIV 120 (276)
T ss_dssp HHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 654332 688888888643
No 219
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=30.05 E-value=63 Score=30.10 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccC----CCCCCEEeccCCC
Q 013729 282 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA----RTPLPVIGVPVRA 357 (437)
Q Consensus 282 ~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~----~~~~pVi~~p~~~ 357 (437)
.....++...|...|++++..... .+....++.+++.+ +.++++++ |+.+-+-.++.+ ....|+--+|..+
T Consensus 25 ~~~~~~i~~~l~~~~~~~~~~~t~---~~~~a~~~~~~~~~-~~d~vv~~-GGDGTl~~v~~~l~~~~~~~~l~iiP~Gt 99 (304)
T 3s40_A 25 HTNLTKIVPPLAAAFPDLHILHTK---EQGDATKYCQEFAS-KVDLIIVF-GGDGTVFECTNGLAPLEIRPTLAIIPGGT 99 (304)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEECC---STTHHHHHHHHHTT-TCSEEEEE-ECHHHHHHHHHHHTTCSSCCEEEEEECSS
T ss_pred HHHHHHHHHHHHHcCCeEEEEEcc---CcchHHHHHHHhhc-CCCEEEEE-ccchHHHHHHHHHhhCCCCCcEEEecCCc
Confidence 356677888899999988776533 23345556655543 67766654 454433333322 2455666778754
No 220
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=29.97 E-value=1.2e+02 Score=27.63 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=38.7
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCC----cEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSD---LPVMKDAAKILTMFSV----PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD---~~~~~~~~~~L~~~G~----~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
.+|+++. +-++ ....+.+.+.|.+.|+ ++.+.+...++.+++..++++.+.+++++.+|+..
T Consensus 9 ~~IGvi~-~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~ 77 (302)
T 2qh8_A 9 AKVAVSQ-IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp EEEEEEE-SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEES
T ss_pred cEEEEEE-eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 4566652 2222 2233444566777787 66666667778887777777777777777666543
No 221
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=29.89 E-value=98 Score=28.16 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEeccc
Q 013729 279 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 279 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
+.+.+.++++.+.+...|..+..-.+. -..++.+.+++++..+ .+++++|-+||.
T Consensus 39 ~r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~iD~lvnnAg~ 95 (280)
T 3tox_A 39 ARNGNALAELTDEIAGGGGEAAALAGD-VGDEALHEALVELAVRRFGGLDTAFNNAGA 95 (280)
T ss_dssp CSCHHHHHHHHHHHTTTTCCEEECCCC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ECCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 445666677776666666554433222 3445666666554332 267888888764
No 222
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A*
Probab=29.83 E-value=2.7e+02 Score=30.32 Aligned_cols=95 Identities=12% Similarity=0.135 Sum_probs=66.4
Q ss_pred CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec-------
Q 013729 233 QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS------- 305 (437)
Q Consensus 233 ~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s------- 305 (437)
+..+=..+..|.+..+++++-.+..+.-.. .|...-|.- ...=+..+.+.+.++++.+++.|+|+++-+..
T Consensus 285 gg~lD~y~~~Gptp~~Vi~~Y~~LtG~p~l-pP~WalG~~-qsr~~Y~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~~~~ 362 (898)
T 3lpp_A 285 GGILDFYILLGDTPEQVVQQYQQLVGLPAM-PAYWNLGFQ-LSRWNYKSLDVVKEVVRRNREAGIPFDTQVTDIDYMEDK 362 (898)
T ss_dssp SSCEEEEEEEESSHHHHHHHHHHHHCCCCC-CCGGGGSCE-ECCSCCCSHHHHHHHHHHHHHTTCCCCEEEECGGGSSTT
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHhCCCCc-CcchhcCcc-eecccCCCHHHHHHHHHHHHHcCCCceeeEeccccccCC
Confidence 445555666899999999999998886432 122222222 11223456789999999999999999988753
Q ss_pred ------CCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 306 ------AHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 306 ------~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
..|-| ...++++++++.|+++.+-
T Consensus 363 ~dFt~D~~~FP-dp~~mv~~Lh~~G~k~vl~ 392 (898)
T 3lpp_A 363 KDFTYDQVAFN-GLPQFVQDLHDHGQKYVII 392 (898)
T ss_dssp CTTCCCTTTTT-THHHHHHHHHHTTCEEEEE
T ss_pred CcceEChhhCC-CHHHHHHHHHHCCCEEEEE
Confidence 23556 3778888889999996654
No 223
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=29.71 E-value=1.9e+02 Score=26.28 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEecccc
Q 013729 281 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 281 D~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~~ 335 (437)
+.+.+.+..+.+...|..+....+. -.+++.+.+++++..+ .+++++|-+||..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 128 (299)
T 3t7c_A 73 TPDDLAETVRQVEALGRRIIASQVD-VRDFDAMQAAVDDGVTQLGRLDIVLANAALA 128 (299)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCceEEEECC-CCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 4677888888888888876655444 4567777777765433 2688999888754
No 224
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=29.47 E-value=3.2e+02 Score=24.66 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=37.8
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 269 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 269 ~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+++|+++....++ ......+.+.++++|+.+... ..+..+++-.+.++.+..++++.+|+..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~i~~~~~~~vdgiIi~~ 67 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQ--YADDDIPNQLSQIENMVTKGVKVLVIAS 67 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHHTCSEEEECC
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEe--eCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 4567777654433 223334456677788765544 3567777667777776677788666644
No 225
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=29.47 E-value=1.6e+02 Score=25.54 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHH-HcCCcEEEEEecCCCChhHHHHhHhhhhhc--CCeEEEEeccc
Q 013729 280 SDLPVMKDAAKILT-MFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 280 sD~~~~~~~~~~L~-~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~--g~~v~i~~ag~ 334 (437)
.+.+.++++.+.+. ..|..+....+. -.+++.+.+++++..+. +++++|-.||.
T Consensus 34 r~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 90 (235)
T 3l77_A 34 RSVDRLEKIAHELMQEQGVEVFYHHLD-VSKAESVEEFSKKVLERFGDVDVVVANAGL 90 (235)
T ss_dssp SCHHHHHHHHHHHHHHHCCCEEEEECC-TTCHHHHHHHCC-HHHHHSSCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEEec-cCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 34555666655554 455554433322 34456566655433222 56777766653
No 226
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=29.36 E-value=1.5e+02 Score=25.67 Aligned_cols=77 Identities=10% Similarity=0.085 Sum_probs=45.9
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
|+-+--|..+.++.+.++.+. .++++++.- .+-.+.+.... +-+|++++... -.++++....++
T Consensus 73 VV~I~~s~~Dil~al~~a~~~---------~~kIavvg~-~~~~~~~~~~~---~ll~~~i~~~~---~~~~~e~~~~i~ 136 (196)
T 2q5c_A 73 SISIKVTRFDTMRAVYNAKRF---------GNELALIAY-KHSIVDKHEIE---AMLGVKIKEFL---FSSEDEITTLIS 136 (196)
T ss_dssp EEEECCCHHHHHHHHHHHGGG---------CSEEEEEEE-SSCSSCHHHHH---HHHTCEEEEEE---ECSGGGHHHHHH
T ss_pred EEEEcCCHhHHHHHHHHHHhh---------CCcEEEEeC-cchhhHHHHHH---HHhCCceEEEE---eCCHHHHHHHHH
Confidence 344444444455544444431 236766643 33333333333 44677776654 367888999999
Q ss_pred hhhhcCCeEEEEe
Q 013729 319 SAHERGIEIIIAG 331 (437)
Q Consensus 319 ~~~~~g~~v~i~~ 331 (437)
++++.|++++|..
T Consensus 137 ~l~~~G~~vvVG~ 149 (196)
T 2q5c_A 137 KVKTENIKIVVSG 149 (196)
T ss_dssp HHHHTTCCEEEEC
T ss_pred HHHHCCCeEEECC
Confidence 9999999998864
No 227
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=29.25 E-value=1.7e+02 Score=26.36 Aligned_cols=58 Identities=10% Similarity=0.037 Sum_probs=38.5
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeE
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEI 327 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v 327 (437)
.+|.|++|.-.+=....-+++.|...|+++++-..+..+..+.....++.++..|+++
T Consensus 59 ~~v~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (246)
T 1jzt_A 59 KHVFVIAGPGNNGGDGLVCARHLKLFGYNPVVFYPKRSERTEFYKQLVHQLNFFKVPV 116 (246)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCCEEEECCCCCTTCHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEcCCCCCCHHHHHHHHHHHHcCCcE
Confidence 4788899988888888899999999999877754432122233343444555556553
No 228
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=28.77 E-value=3e+02 Score=26.33 Aligned_cols=139 Identities=15% Similarity=0.076 Sum_probs=69.9
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhh----------hcCCeEEEEecccccc
Q 013729 268 ILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH----------ERGIEIIIAGAGGAAH 337 (437)
Q Consensus 268 ~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~----------~~g~~v~i~~ag~~~~ 337 (437)
...+| .|.|.- .....+++.|.++|.++.+. .++++++.++.+++. ...+++++.++ ..+-
T Consensus 172 ~GktV-~V~G~G---~VG~~~A~~L~~~GakVvv~----D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a-~~~~ 242 (364)
T 1leh_A 172 EGLAV-SVQGLG---NVAKALCKKLNTEGAKLVVT----DVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-LGAV 242 (364)
T ss_dssp TTCEE-EEECCS---HHHHHHHHHHHHTTCEEEEE----CSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-CSCC
T ss_pred CcCEE-EEECch---HHHHHHHHHHHHCCCEEEEE----cCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccc-hHHH
Confidence 33456 566764 67888999999999985533 578888877765321 11345555544 1111
Q ss_pred ccC-cccCCCCCCEEeccCCCCCCC-ChhhHHHhhhCCCCCceE-EEEeCCcchHHHHHHHHHccCChHHHHHHHHHHHH
Q 013729 338 LPG-MVAARTPLPVIGVPVRASALD-GLDSLLSIVQMPRGVPVA-TVAINNATNAGLLAVRMLGFGDADLRARMQQYMED 414 (437)
Q Consensus 338 l~~-~i~~~~~~pVi~~p~~~~~~~-g~~~l~~~~~~~~gvp~~-tv~~~~~~~aa~~a~~~l~~~~~~~~~~~~~~~~~ 414 (437)
+-. .+......-|++.-. ....+ ..+.++. ..||-++ -.. -|+=+.++.+.+++..+.+++.+||+..+ +
T Consensus 243 I~~~~~~~lg~~iV~e~An-~p~t~~ea~~~L~----~~Gi~~~Pd~~-~NaGGv~~s~~E~~~~~~e~v~~~l~~i~-~ 315 (364)
T 1leh_A 243 LNDFTIPQLKAKVIAGSAD-NQLKDPRHGKYLH----ELGIVYAPDYV-INAGGVINVADELYGYNRTRAMKRVDGIY-D 315 (364)
T ss_dssp BSTTHHHHCCCSEECCSCS-CCBSSHHHHHHHH----HHTCEECCHHH-HTTHHHHHHHHGGGCCCHHHHHHHHTHHH-H
T ss_pred hCHHHHHhCCCcEEEeCCC-CCcccHHHHHHHH----hCCCEEeccee-ecCCceEEEEEeecCCCHHHHHHHHHHHH-H
Confidence 111 111122223332211 11011 1222222 3454222 000 13445556666667778889999998876 3
Q ss_pred hHHHHHHH
Q 013729 415 MRDDVLTK 422 (437)
Q Consensus 415 ~~~~~~~~ 422 (437)
...++.+.
T Consensus 316 ~~~~i~~~ 323 (364)
T 1leh_A 316 SIEKIFAI 323 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 229
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=28.57 E-value=1.3e+02 Score=26.62 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEeccc
Q 013729 280 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
.+.+.+.+..+.+...|..+....+. -..++.+.+.+++..+ .+++++|-.||.
T Consensus 46 r~~~~~~~~~~~l~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag~ 101 (260)
T 2zat_A 46 RKQENVDRTVATLQGEGLSVTGTVCH-VGKAEDRERLVAMAVNLHGGVDILVSNAAV 101 (260)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 34555666666666666665443322 3456666666543322 267888888874
No 230
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=28.47 E-value=1.2e+02 Score=23.70 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCcE---EEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcc
Q 013729 284 VMKDAAKILTMFSVPH---EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV 342 (437)
Q Consensus 284 ~~~~~~~~L~~~G~~~---~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 342 (437)
.+.++.+.+...|+++ +..+. ++.|. ..+++.+++.+++.++.++.+...+..++
T Consensus 71 ~l~~~~~~~~~~g~~~~~~~~~~~--~g~~~--~~I~~~a~~~~~dliV~G~~~~~~~~~~~ 128 (147)
T 3hgm_A 71 IAVQAKTRATELGVPADKVRAFVK--GGRPS--RTIVRFARKRECDLVVIGAQGTNGDKSLL 128 (147)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEE--ESCHH--HHHHHHHHHTTCSEEEECSSCTTCCSCCC
T ss_pred HHHHHHHHHHhcCCCccceEEEEe--cCCHH--HHHHHHHHHhCCCEEEEeCCCCcccccee
Confidence 3445556667788887 76654 45553 44555667778898888764444444443
No 231
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=28.36 E-value=1.2e+02 Score=25.30 Aligned_cols=52 Identities=10% Similarity=0.014 Sum_probs=31.4
Q ss_pred EEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC
Q 013729 300 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 356 (437)
Q Consensus 300 ~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~ 356 (437)
.+-++|..|...++.+.++.++++|++++..-....+.|... ..-+|-+|..
T Consensus 99 ~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~-----ad~~l~~~~~ 150 (183)
T 2xhz_A 99 VVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARA-----ADVHLCVKVA 150 (183)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHH-----SSEEEECCCS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHh-----CCEEEEeCCC
Confidence 344567677777788888888888988665443222233222 3456666653
No 232
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=28.05 E-value=1.5e+02 Score=26.30 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=46.4
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+-.=-.+-+.+.++ ....| ++. +.+.+.+.++.+.+...|..+..-.+. -.+++.+.+++
T Consensus 4 ~vlVTGas~gIG~~ia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~ 70 (256)
T 1geg_A 4 VALVTGAGQGIGKAIALRLVK---------DGFAV-AIA--DYNDATAKAVASEINQAGGHAVAVKVD-VSDRDQVFAAV 70 (256)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEEec-CCCHHHHHHHH
Confidence 366777665544443333332 22345 333 344566677777777777655433332 34566677666
Q ss_pred hhhhhc--CCeEEEEeccc
Q 013729 318 SSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~~--g~~v~i~~ag~ 334 (437)
++..+. +++++|-.||.
T Consensus 71 ~~~~~~~g~id~lv~nAg~ 89 (256)
T 1geg_A 71 EQARKTLGGFDVIVNNAGV 89 (256)
T ss_dssp HHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 543322 68888888864
No 233
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=28.02 E-value=1.3e+02 Score=26.81 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=45.0
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
++++|.+.-=-..-+...++ ....| ++. +.+.+.+.++.+.+...|..+..-.+. -..++.+.++++
T Consensus 8 vlVTGas~gIG~~ia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~ 74 (260)
T 2qq5_A 8 CVVTGASRGIGRGIALQLCK---------AGATV-YIT--GRHLDTLRVVAQEAQSLGGQCVPVVCD-SSQESEVRSLFE 74 (260)
T ss_dssp EEESSTTSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHHSSEEEEEECC-TTSHHHHHHHHH
T ss_pred EEEeCCCchHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHHcCCceEEEECC-CCCHHHHHHHHH
Confidence 56666665433333333332 22345 333 345566677777777667554433222 345677777776
Q ss_pred hhhh---cCCeEEEEecc
Q 013729 319 SAHE---RGIEIIIAGAG 333 (437)
Q Consensus 319 ~~~~---~g~~v~i~~ag 333 (437)
+..+ ..++++|-+||
T Consensus 75 ~~~~~~~g~id~lvnnAg 92 (260)
T 2qq5_A 75 QVDREQQGRLDVLVNNAY 92 (260)
T ss_dssp HHHHHHTTCCCEEEECCC
T ss_pred HHHHhcCCCceEEEECCc
Confidence 5532 35788888884
No 234
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=27.78 E-value=2e+02 Score=26.31 Aligned_cols=63 Identities=6% Similarity=0.007 Sum_probs=42.1
Q ss_pred CCCeEEEEEcc--CCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 268 ILPRIGIIMGS--DSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 268 ~~~~V~ii~gs--~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+...|+++... .++ ...+..+.+.++++|+.+... ..+..++.-.++++.+..++++-+|...
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 127 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLA--DGKHSAEEERQAIQYLLDLRCDAIMIYP 127 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEE--ECTTSHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEE--eCCCChHHHHHHHHHHHhCCCCEEEEeC
Confidence 34578788755 233 344555667788899876544 4577777777777777788888666644
No 235
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=27.67 E-value=2.3e+02 Score=25.46 Aligned_cols=85 Identities=12% Similarity=-0.007 Sum_probs=50.3
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+..=-.+-+...++ ....| ++. +.++.+.++++.+.+...|..+..-.+. -..++.+.+++
T Consensus 31 ~~lVTGas~GIG~aia~~la~---------~G~~V-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~ 98 (280)
T 4da9_A 31 VAIVTGGRRGIGLGIARALAA---------SGFDI-AIT-GIGDAEGVAPVIAELSGLGARVIFLRAD-LADLSSHQATV 98 (280)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------TTCEE-EEE-ESCCHHHHHHHHHHHHHTTCCEEEEECC-TTSGGGHHHHH
T ss_pred EEEEecCCCHHHHHHHHHHHH---------CCCeE-EEE-eCCCHHHHHHHHHHHHhcCCcEEEEEec-CCCHHHHHHHH
Confidence 366777765533333333332 22345 333 2346677888888888888776554433 45567677776
Q ss_pred hhhhhc--CCeEEEEeccc
Q 013729 318 SSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~~--g~~v~i~~ag~ 334 (437)
++..++ +++++|-+||.
T Consensus 99 ~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 99 DAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp HHHHHHHSCCCEEEEECC-
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 544333 68899988875
No 236
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=27.65 E-value=1e+02 Score=27.09 Aligned_cols=60 Identities=13% Similarity=0.267 Sum_probs=36.7
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEE--------------------EEEecCCCChhHHHHhHhhhhh--cCCeE
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHE--------------------VRIVSAHRTPDLMFSYASSAHE--RGIEI 327 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~--------------------~~v~s~hr~p~~~~~~~~~~~~--~g~~v 327 (437)
.+| ++.|..+....+...+..|..+|+++. +-++|..|...++.+.++.+++ +|+++
T Consensus 60 ~~I-~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~v 138 (220)
T 3etn_A 60 GKL-VTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKF 138 (220)
T ss_dssp CCE-EEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEE
T ss_pred CEE-EEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeE
Confidence 344 555655556667777767777776533 2334555556667777777777 77775
Q ss_pred EEE
Q 013729 328 IIA 330 (437)
Q Consensus 328 ~i~ 330 (437)
+..
T Consensus 139 I~I 141 (220)
T 3etn_A 139 IVI 141 (220)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 237
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=27.52 E-value=3e+02 Score=23.73 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=47.4
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCC
Q 013729 270 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAART 346 (437)
Q Consensus 270 ~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~ 346 (437)
..|+++....++ ......+.+.+++.|+.+... ..+..+++..++++.+..++++-+|......... ..+.. .
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~-~~l~~-~ 78 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMM--ESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE-EMLAH-W 78 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEE--ECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT-TTSGG-G
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEE--eCCCcHHHHHHHHHHHHhcCCCEEEEecCccccH-HHHHh-c
Confidence 467777754444 234455567788899876554 4466777777777777778888666543222222 22322 2
Q ss_pred CCCEEec
Q 013729 347 PLPVIGV 353 (437)
Q Consensus 347 ~~pVi~~ 353 (437)
..|||.+
T Consensus 79 ~~pvV~~ 85 (255)
T 1byk_A 79 QSSLVLL 85 (255)
T ss_dssp SSSEEEE
T ss_pred CCCEEEE
Confidence 3577765
No 238
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=27.42 E-value=1.5e+02 Score=27.35 Aligned_cols=82 Identities=10% Similarity=0.085 Sum_probs=43.9
Q ss_pred CCeEEEEEccCCC----HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEeccccccccCcc
Q 013729 269 LPRIGIIMGSDSD----LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGAAHLPGMV 342 (437)
Q Consensus 269 ~~~V~ii~gs~sD----~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~~~~l~~~i 342 (437)
..+|+++..+.++ ......+.+.++++|+.+... .....+++..+.++++-. ++++.+|+.. .......++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~--~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~~~~~ 79 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRIL--YAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVAPQIL 79 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEE--ECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEE--ECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhHHHHH
Confidence 3467777665544 233444456667788776554 456677665566655555 4777666543 111222222
Q ss_pred c--CCCCCCEEec
Q 013729 343 A--ARTPLPVIGV 353 (437)
Q Consensus 343 ~--~~~~~pVi~~ 353 (437)
. .....|||.+
T Consensus 80 ~~~~~~giPvV~~ 92 (350)
T 3h75_A 80 RLSQGSGIKLFIV 92 (350)
T ss_dssp HHHTTSCCEEEEE
T ss_pred HHHHhCCCcEEEE
Confidence 1 2345677654
No 239
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=27.27 E-value=3.7e+02 Score=25.73 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=41.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
..|.|+..++.....+.++++.|+..|+.++... + .++ +-+-++.+...|++..+++.
T Consensus 299 ~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~-~-~~~---~~~k~~~A~~~g~p~~iiiG 356 (401)
T 1evl_A 299 VQVVIMNITDSQSEYVNELTQKLSNAGIRVKADL-R-NEK---IGFKIREHTLRRVPYMLVCG 356 (401)
T ss_dssp SCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEC-C-SSC---HHHHHHHHHHTTCSEEEEEC
T ss_pred eEEEEEecCHHHHHHHHHHHHHHHHCCCEEEEEC-C-CCC---HHHHHHHHHhcCCCEEEEEC
Confidence 4576776666678889999999999999988873 1 233 44545666888999666553
No 240
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=27.20 E-value=97 Score=27.98 Aligned_cols=84 Identities=10% Similarity=0.084 Sum_probs=50.0
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+..=-.+-+.+.++ ....| ++. +.+.+.++++.+.+...|..+....+. -..++.+.+++
T Consensus 30 ~~lVTGas~GIG~aia~~la~---------~G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~ 96 (270)
T 3ftp_A 30 VAIVTGASRGIGRAIALELAR---------RGAMV-IGT--ATTEAGAEGIGAAFKQAGLEGRGAVLN-VNDATAVDALV 96 (270)
T ss_dssp EEEETTCSSHHHHHHHHHHHH---------TTCEE-EEE--ESSHHHHHHHHHHHHHHTCCCEEEECC-TTCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEEEe-CCCHHHHHHHH
Confidence 366677665543333333332 22345 333 346677888888888888775544333 45677777776
Q ss_pred hhhhhc--CCeEEEEeccc
Q 013729 318 SSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~~--g~~v~i~~ag~ 334 (437)
++..++ +++++|-+||.
T Consensus 97 ~~~~~~~g~iD~lvnnAg~ 115 (270)
T 3ftp_A 97 ESTLKEFGALNVLVNNAGI 115 (270)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 544332 68899988874
No 241
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=27.14 E-value=1.4e+02 Score=23.40 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhc
Q 013729 244 SSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER 323 (437)
Q Consensus 244 ~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~ 323 (437)
.+-++-..++.......+ +-..|.|+ ...|++-...-....++.|+.+.+-.- .+.-++-.+--.+++..
T Consensus 59 edkedfrenireiweryp------qldvvviv--ttddkewikdfieeakergvevfvvyn--nkdddrrkeaqqefrsd 128 (162)
T 2l82_A 59 EDKEDFRENIREIWERYP------QLDVVVIV--TTDDKEWIKDFIEEAKERGVEVFVVYN--NKDDDRRKEAQQEFRSD 128 (162)
T ss_dssp CSHHHHHHHHHHHHHHCT------TCCEEEEE--ECCCHHHHHHHHHHHHHTTCEEEEEEE--CSCHHHHHHHHHHHCCS
T ss_pred ccHHHHHHHHHHHHHhCC------CCcEEEEE--ecCcHHHHHHHHHHHHhcCcEEEEEec--CCCchhHHHHHHHhhhc
Confidence 455555555555544333 11223233 244566555555555666665443321 34444444444455555
Q ss_pred CCeEEEE
Q 013729 324 GIEIIIA 330 (437)
Q Consensus 324 g~~v~i~ 330 (437)
|++|.-+
T Consensus 129 gvdvrtv 135 (162)
T 2l82_A 129 GVDVRTV 135 (162)
T ss_dssp SCEEEEE
T ss_pred Cceeeec
Confidence 6655544
No 242
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=26.96 E-value=97 Score=28.10 Aligned_cols=83 Identities=12% Similarity=0.080 Sum_probs=45.1
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
++++|.+..=-.+-+.+.++ ...+| ++.+. +.+.+.++.+.+...|..+..-.+. -..++.+.++++
T Consensus 36 ~lVTGas~GIG~aia~~la~---------~G~~V-~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~~~~~~~ 102 (275)
T 4imr_A 36 ALVTGSSRGIGAAIAEGLAG---------AGAHV-ILHGV--KPGSTAAVQQRIIASGGTAQELAGD-LSEAGAGTDLIE 102 (275)
T ss_dssp EEETTCSSHHHHHHHHHHHH---------TTCEE-EEEES--STTTTHHHHHHHHHTTCCEEEEECC-TTSTTHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHH---------CCCEE-EEEcC--CHHHHHHHHHHHHhcCCeEEEEEec-CCCHHHHHHHHH
Confidence 56667665433333333332 22345 34333 3344566666777777665544332 345666666665
Q ss_pred hhhh-cCCeEEEEeccc
Q 013729 319 SAHE-RGIEIIIAGAGG 334 (437)
Q Consensus 319 ~~~~-~g~~v~i~~ag~ 334 (437)
...+ .+++++|-+||.
T Consensus 103 ~~~~~g~iD~lvnnAg~ 119 (275)
T 4imr_A 103 RAEAIAPVDILVINASA 119 (275)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHhCCCCEEEECCCC
Confidence 4433 367888888874
No 243
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=26.95 E-value=1.1e+02 Score=26.80 Aligned_cols=41 Identities=5% Similarity=-0.014 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCCc-----------eEEEEEEEEeCCCcEEEEEEcCCC
Q 013729 111 ELATDVAHKAVSSLEGA-----------GIFAVELFWTNNGQILLNEVAPRP 151 (437)
Q Consensus 111 ~~i~~~a~~i~~alg~~-----------G~~~ve~~~~~dg~~~viEiNpR~ 151 (437)
.+.++++.++++..||. |-..+|++..+++..+++||-.|-
T Consensus 18 ~~fE~~va~~L~~~Gy~i~~~v~v~~r~~dggIDIIA~k~~~~v~VEvK~r~ 69 (199)
T 1y88_A 18 YFQGHMVARLLEEHGFETKTNVIVQGNCVEQEIDVVAERDGERYMIECKFHN 69 (199)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEEEECSSSEEEEEEEEEETTEEEEEEECCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEeecccCCCCCCcEEEEEEECCEEEEEEecccc
Confidence 45788999999999985 346799888878889999998775
No 244
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=26.76 E-value=95 Score=27.21 Aligned_cols=57 Identities=2% Similarity=-0.202 Sum_probs=30.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCC--------CChhHHHHhHhhhhhc--CCeEE
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAH--------RTPDLMFSYASSAHER--GIEII 328 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h--------r~p~~~~~~~~~~~~~--g~~v~ 328 (437)
.+|++++ ......-....+.|.+.|+.+..-...-- .+++.+.+.++++.+. |++++
T Consensus 109 ~rvgvlt--~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gadaI 175 (223)
T 2dgd_A 109 RKLWIGT--PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADAV 175 (223)
T ss_dssp CEEEEEE--SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSSEE
T ss_pred CeEEEEe--CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCCCEE
Confidence 4788885 33334344555678888988533221111 1344555555555555 66633
No 245
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=26.65 E-value=1.8e+02 Score=26.04 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=46.5
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCC---cEEEEEecCCCChhHHH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSV---PHEVRIVSAHRTPDLMF 314 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~---~~~~~v~s~hr~p~~~~ 314 (437)
.++++|.+.-=-.+-+...++ ...+| ++. +.+.+.+.+..+.++..|. .+....+. -.+++.+.
T Consensus 13 ~vlVTGas~gIG~aia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~~D-v~~~~~v~ 79 (281)
T 3svt_A 13 TYLVTGGGSGIGKGVAAGLVA---------AGASV-MIV--GRNPDKLAGAVQELEALGANGGAIRYEPTD-ITNEDETA 79 (281)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHTTCCSSCEEEEEECC-TTSHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHHhCCCCceEEEEeCC-CCCHHHHH
Confidence 366677665433333333332 22345 333 3556677777777777765 33333222 45566677
Q ss_pred HhHhhhhh--cCCeEEEEeccc
Q 013729 315 SYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 315 ~~~~~~~~--~g~~v~i~~ag~ 334 (437)
+++++..+ .+++++|-+||.
T Consensus 80 ~~~~~~~~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 80 RAVDAVTAWHGRLHGVVHCAGG 101 (281)
T ss_dssp HHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCc
Confidence 76654433 257888888875
No 246
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=26.53 E-value=91 Score=29.82 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=50.6
Q ss_pred CeEEEEEccCC------CHHHHHHHHHHHHHcCCcEEEEEecCC-------CCh-hHHHHhHhhhhhcCCeEEEEecccc
Q 013729 270 PRIGIIMGSDS------DLPVMKDAAKILTMFSVPHEVRIVSAH-------RTP-DLMFSYASSAHERGIEIIIAGAGGA 335 (437)
Q Consensus 270 ~~V~ii~gs~s------D~~~~~~~~~~L~~~G~~~~~~v~s~h-------r~p-~~~~~~~~~~~~~g~~v~i~~ag~~ 335 (437)
.+|+||+-|.. +...++.+.+.|+++|+++...- .+. +++ +|.+++..-+.+..++++++..||.
T Consensus 6 D~I~ivaPSs~~~~~~~~~~~~~~~~~~L~~~G~~v~~~~-~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 84 (346)
T 4eys_A 6 STIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLP-HSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAIGGD 84 (346)
T ss_dssp CEEEEECSSCCGGGSGGGHHHHHHHHHHHHHTTCEEEECT-TTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEECCCCS
T ss_pred cEEEEEeCCCcccccccCHHHHHHHHHHHHhCCCEEEECC-chhccCCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 46888875542 24577888899999999977641 111 223 3444455555667889988888764
Q ss_pred --ccccCcc-c------CCCCCCEEe
Q 013729 336 --AHLPGMV-A------ARTPLPVIG 352 (437)
Q Consensus 336 --~~l~~~i-~------~~~~~pVi~ 352 (437)
+.|.+.+ . -...++++|
T Consensus 85 g~~rlLp~L~d~~~~~~~~~~K~~iG 110 (346)
T 4eys_A 85 DTYRLLPYLFENDQLQKVIKQKIFLG 110 (346)
T ss_dssp CGGGGHHHHHTTSHHHHHCCCCEEEE
T ss_pred CHHHHHHHhhchhhhhHhhCCcEEEE
Confidence 4555443 1 112477776
No 247
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=26.27 E-value=1.4e+02 Score=27.15 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=47.5
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+--=-..-+.+.++ ....| ++. +.+.+.+.++.+.+...|..+..-.+. -..++.+.+++
T Consensus 36 ~vlVTGas~gIG~aia~~L~~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~ 102 (291)
T 3cxt_A 36 IALVTGASYGIGFAIASAYAK---------AGATI-VFN--DINQELVDRGMAAYKAAGINAHGYVCD-VTDEDGIQAMV 102 (291)
T ss_dssp EEEEETCSSHHHHHHHHHHHH---------TTCEE-EEE--ESSHHHHHHHHHHHHHTTCCCEEEECC-TTCHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhcCCeEEEEEec-CCCHHHHHHHH
Confidence 467777765544444443332 22345 333 345566777777777777654433332 34567677766
Q ss_pred hhhhh--cCCeEEEEecccc
Q 013729 318 SSAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 318 ~~~~~--~g~~v~i~~ag~~ 335 (437)
++..+ .+++++|-+||..
T Consensus 103 ~~~~~~~g~iD~lvnnAg~~ 122 (291)
T 3cxt_A 103 AQIESEVGIIDILVNNAGII 122 (291)
T ss_dssp HHHHHHTCCCCEEEECCCCC
T ss_pred HHHHHHcCCCcEEEECCCcC
Confidence 54332 2478888888743
No 248
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=26.26 E-value=2.7e+02 Score=24.76 Aligned_cols=80 Identities=11% Similarity=-0.005 Sum_probs=43.5
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecc-ccccccCccc
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG-GAAHLPGMVA 343 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag-~~~~l~~~i~ 343 (437)
+...|+++. ..++ ...+..+.+.++++|+.+..... +..++ -.+.++.+..++++-+|.... ........+.
T Consensus 11 ~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~-~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~ 86 (289)
T 3k9c_A 11 SSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAV--APSRA-EKVAVQALMRERCEAAILLGTRFDTDELGALA 86 (289)
T ss_dssp --CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEE--BTTBC-HHHHHHHHTTTTEEEEEEETCCCCHHHHHHHH
T ss_pred CCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeC--CCCHH-HHHHHHHHHhCCCCEEEEECCCCCHHHHHHHH
Confidence 345677877 5444 23344556777889987665533 34444 455666666778886665542 2222222222
Q ss_pred CCCCCCEEec
Q 013729 344 ARTPLPVIGV 353 (437)
Q Consensus 344 ~~~~~pVi~~ 353 (437)
. ..|||.+
T Consensus 87 -~-~iPvV~i 94 (289)
T 3k9c_A 87 -D-RVPALVV 94 (289)
T ss_dssp -T-TSCEEEE
T ss_pred -c-CCCEEEE
Confidence 2 5777765
No 249
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=26.24 E-value=2.5e+02 Score=23.69 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=29.2
Q ss_pred EEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccC
Q 013729 301 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 355 (437)
Q Consensus 301 ~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 355 (437)
+-++|..|....+.+.++.++++|++++.......+.|...+ .....+|-+|.
T Consensus 117 vI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~--~~ad~~l~~~~ 169 (199)
T 1x92_A 117 LLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLL--LPEDVEIRVPS 169 (199)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHC--CTTCEEEECSC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhcc--ccCCEEEEeCC
Confidence 344566666666778888888888886543321122232221 01445666665
No 250
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=26.12 E-value=2e+02 Score=25.59 Aligned_cols=84 Identities=14% Similarity=0.235 Sum_probs=45.6
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.|+++|.+-.=-..-+...++ ....| ++. +.+...+.++.+.++..|..+..-.+. -.+++.+.+++
T Consensus 33 ~vlITGasggIG~~la~~L~~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-l~~~~~v~~~~ 99 (272)
T 1yb1_A 33 IVLITGAGHGIGRLTAYEFAK---------LKSKL-VLW--DINKHGLEETAAKCKGLGAKVHTFVVD-CSNREDIYSSA 99 (272)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHH---------CCCEE-EEE--EcCHHHHHHHHHHHHhcCCeEEEEEee-CCCHHHHHHHH
Confidence 467777765544443333332 12244 332 234566666666777777665443333 34566666666
Q ss_pred hhhhh--cCCeEEEEeccc
Q 013729 318 SSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~--~g~~v~i~~ag~ 334 (437)
++..+ .+++++|-+||.
T Consensus 100 ~~~~~~~g~iD~li~~Ag~ 118 (272)
T 1yb1_A 100 KKVKAEIGDVSILVNNAGV 118 (272)
T ss_dssp HHHHHHTCCCSEEEECCCC
T ss_pred HHHHHHCCCCcEEEECCCc
Confidence 54332 257788877764
No 251
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=26.10 E-value=1.6e+02 Score=26.27 Aligned_cols=84 Identities=15% Similarity=0.151 Sum_probs=46.4
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHH-HHcCCcEEEEEecCCCChhHHHHh
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKIL-TMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L-~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
.++++|.+..=-..-+...++ ....| ++. +.+.+.+.+..+.+ ...|..+..-.+. -..++.+.++
T Consensus 23 ~~lVTGas~gIG~~ia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~D-l~~~~~v~~~ 89 (267)
T 1vl8_A 23 VALVTGGSRGLGFGIAQGLAE---------AGCSV-VVA--SRNLEEASEAAQKLTEKYGVETMAFRCD-VSNYEEVKKL 89 (267)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHHHCCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHHhcCCeEEEEEcC-CCCHHHHHHH
Confidence 367777765544444443332 22345 333 34456666666666 5557665443333 4557777776
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013729 317 ASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 317 ~~~~~~--~g~~v~i~~ag~ 334 (437)
+++..+ .+++++|-.||.
T Consensus 90 ~~~~~~~~g~iD~lvnnAg~ 109 (267)
T 1vl8_A 90 LEAVKEKFGKLDTVVNAAGI 109 (267)
T ss_dssp HHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCc
Confidence 654332 268888888874
No 252
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=26.04 E-value=3.6e+02 Score=24.79 Aligned_cols=48 Identities=10% Similarity=-0.053 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCC-------CChhHHHHhHhhhhhcCCeEEEE
Q 013729 283 PVMKDAAKILTMFSVPHEVRIVSAH-------RTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 283 ~~~~~~~~~L~~~G~~~~~~v~s~h-------r~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
+.+.++.+..++.|+.+++.+...- -+|+.+.++++.+.+.|++.+..
T Consensus 124 ~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l 178 (302)
T 2ftp_A 124 ERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSL 178 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4456667777778887776654331 24677777777677777775433
No 253
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=26.02 E-value=1.3e+02 Score=27.49 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=32.4
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC--------CCChhHHHHhHhhhhhcCCeEEE
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA--------HRTPDLMFSYASSAHERGIEIII 329 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~--------hr~p~~~~~~~~~~~~~g~~v~i 329 (437)
.+|++++ ......-....+.|...|+++..-...- ..+++.+.+.++++...|+++++
T Consensus 147 ~rvgvlt--p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIv 212 (273)
T 2xed_A 147 QRVALVT--PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALV 212 (273)
T ss_dssp CEEEEEE--CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEE
T ss_pred CeEEEEc--CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEE
Confidence 4787885 3333444466678888898853322111 12355566666666666676433
No 254
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=25.81 E-value=2.3e+02 Score=26.10 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhc--CCeEEEEecccc
Q 013729 281 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 281 D~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~--g~~v~i~~ag~~ 335 (437)
+.+.+.+..+.+...|..+....+. -.+++.+.+++++..+. +++++|-+||..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~ 146 (317)
T 3oec_A 91 SPEELKETVRLVEEQGRRIIARQAD-VRDLASLQAVVDEALAEFGHIDILVSNVGIS 146 (317)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4677788888888888776554443 45677777777654332 688999888754
No 255
>4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A*
Probab=25.67 E-value=3.1e+02 Score=29.47 Aligned_cols=94 Identities=7% Similarity=0.082 Sum_probs=65.4
Q ss_pred ceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC-------
Q 013729 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA------- 306 (437)
Q Consensus 234 ~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~------- 306 (437)
..+-..+..|++..+++++-.+..+.-..+ |...-|.. ...-+-.+...+.++++.+++.|+|+++-+...
T Consensus 230 g~ld~y~~~G~~p~~v~~~Y~~ltG~~~lp-P~WalG~~-~sr~~Y~s~~ev~~vv~~~r~~~IP~Dvi~lD~dw~g~d~ 307 (817)
T 4ba0_A 230 GRSAYILVAGNSYPSLIENFTQVTGRQPLP-PRWALGSF-ASRFGYRSEAETRATVQKYKTEDFPLDTIVLDLYWFGKDI 307 (817)
T ss_dssp SCCEEEEEECSSHHHHHHHHHHHHCCCCCC-CGGGGSBE-ECCBCCCSHHHHHHHHHHHHHHTCCCCEEEECGGGSCSSS
T ss_pred CcEEEEEecCCCHHHHHHHHHHhcCCCCCC-CccccCcc-eecccCCCHHHHHHHHHHHHHhCCCCcEEEEcccccCCcc
Confidence 345667788999999999999998874432 22222322 111133467889999999999999999887764
Q ss_pred -----------CCChhHHHHhHhhhhhcCCeEEEE
Q 013729 307 -----------HRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 307 -----------hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
.|-|+ ..++++++++.|+++.+-
T Consensus 308 ~~~~gdftwd~~~FPd-p~~mv~~Lh~~G~k~vl~ 341 (817)
T 4ba0_A 308 KGHMGNLDWDKENFPT-PLDMMADFKQQGVKTVLI 341 (817)
T ss_dssp SSCTTCCSCCTTTCSC-HHHHHHHHHHTTCEEEEE
T ss_pred ccccCccccccccCCC-HHHHHHHHHHCCCEEEEE
Confidence 23344 467788889999996654
No 256
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=25.61 E-value=1.9e+02 Score=25.51 Aligned_cols=85 Identities=22% Similarity=0.247 Sum_probs=44.4
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHc-CCcEEEEEecCCCChhHHHHh
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~-G~~~~~~v~s~hr~p~~~~~~ 316 (437)
.++++|.+--=-..-+.+.++ ....| ++. +.+.+.+.++.+.+... |..+..-.+. -..++.+.++
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~D-~~~~~~~~~~ 75 (263)
T 3ai3_A 9 VAVITGSSSGIGLAIAEGFAK---------EGAHI-VLV--ARQVDRLHEAARSLKEKFGVRVLEVAVD-VATPEGVDAV 75 (263)
T ss_dssp EEEEESCSSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHHHCCCEEEEECC-TTSHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHH---------CCCEE-EEE--cCCHHHHHHHHHHHHHhcCCceEEEEcC-CCCHHHHHHH
Confidence 366677665433333333332 12244 333 23455566666666554 6554433222 3456667666
Q ss_pred Hhhhhhc--CCeEEEEecccc
Q 013729 317 ASSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 317 ~~~~~~~--g~~v~i~~ag~~ 335 (437)
+++..+. +++++|-+||..
T Consensus 76 ~~~~~~~~g~id~lv~~Ag~~ 96 (263)
T 3ai3_A 76 VESVRSSFGGADILVNNAGTG 96 (263)
T ss_dssp HHHHHHHHSSCSEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 6543322 688888888753
No 257
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=25.55 E-value=1.5e+02 Score=26.52 Aligned_cols=82 Identities=7% Similarity=-0.032 Sum_probs=47.6
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEecc-ccccccCccc
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG-GAAHLPGMVA 343 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag-~~~~l~~~i~ 343 (437)
+..+|+++....++ ......+.+.+++.|+.+... .....+++..++++.+..++++-+|+... ........+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~ 84 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLC--NTESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNII 84 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEE--eCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHh
Confidence 44578788754333 233445556777888876543 44666766666777777778886666432 1112222222
Q ss_pred CCCCCCEEec
Q 013729 344 ARTPLPVIGV 353 (437)
Q Consensus 344 ~~~~~pVi~~ 353 (437)
...|||.+
T Consensus 85 --~~iPvV~~ 92 (285)
T 3c3k_A 85 --GAFPWVQC 92 (285)
T ss_dssp --TTSSEEEE
T ss_pred --cCCCEEEE
Confidence 45677765
No 258
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=25.42 E-value=2.3e+02 Score=25.15 Aligned_cols=86 Identities=10% Similarity=0.035 Sum_probs=51.4
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.|+++|.+..=-.+-+.+.++ ....|.++ ...+.+..+++.+.+...|..+..-.+. -.+++.+.+++
T Consensus 28 ~vlITGas~gIG~a~a~~l~~---------~G~~V~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~v~~~~ 95 (272)
T 4e3z_A 28 VVLVTGGSRGIGAAVCRLAAR---------QGWRVGVN--YAANREAADAVVAAITESGGEAVAIPGD-VGNAADIAAMF 95 (272)
T ss_dssp EEEETTTTSHHHHHHHHHHHH---------TTCEEEEE--ESSCHHHHHHHHHHHHHTTCEEEEEECC-TTCHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHH---------CCCEEEEE--cCCChhHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHH
Confidence 577788776544444444443 22344232 2345667777777888877665544333 45677777776
Q ss_pred hhhhhc--CCeEEEEecccc
Q 013729 318 SSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 318 ~~~~~~--g~~v~i~~ag~~ 335 (437)
++..+. +++++|-+||..
T Consensus 96 ~~~~~~~g~id~li~nAg~~ 115 (272)
T 4e3z_A 96 SAVDRQFGRLDGLVNNAGIV 115 (272)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHhCCCCCEEEECCCCC
Confidence 654332 688888888654
No 259
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=25.28 E-value=1.7e+02 Score=25.97 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=45.8
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChhHHHH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFS 315 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~hr~p~~~~~ 315 (437)
.++++|.+..=-..-+.+.++ ....| ++. +.+.+.+.++.+.+... |..+....+. -..++.+.+
T Consensus 15 ~vlVTGas~gIG~~ia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~ 81 (267)
T 1iy8_A 15 VVLITGGGSGLGRATAVRLAA---------EGAKL-SLV--DVSSEGLEASKAAVLETAPDAEVLTTVAD-VSDEAQVEA 81 (267)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHHCTTCCEEEEECC-TTSHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhhcCCceEEEEEcc-CCCHHHHHH
Confidence 367777765544443443332 22345 333 34456666666666554 5554433322 455677777
Q ss_pred hHhhhhh--cCCeEEEEecccc
Q 013729 316 YASSAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 316 ~~~~~~~--~g~~v~i~~ag~~ 335 (437)
++++..+ .+++++|-.||..
T Consensus 82 ~~~~~~~~~g~id~lv~nAg~~ 103 (267)
T 1iy8_A 82 YVTATTERFGRIDGFFNNAGIE 103 (267)
T ss_dssp HHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHcCCCCEEEECCCcC
Confidence 6654432 2688888888743
No 260
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=25.27 E-value=2.3e+02 Score=26.29 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=40.5
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+...|+++....++ ...+..+.+.+.+.|+.+... ..+..++...++++.+..++++-+|...
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdGiI~~~ 134 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLG--YTAYSPEREEQLVETMLRRRPEAMVLSY 134 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEE--eCCCChHHHHHHHHHHHhCCCCEEEEeC
Confidence 34568787755444 234445567778888876544 4567777777777777778888666543
No 261
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=25.23 E-value=2e+02 Score=25.18 Aligned_cols=85 Identities=20% Similarity=0.223 Sum_probs=46.9
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.|+++|.+-.=-..-+...++ ....| ++. +.+.+...+..+.++..|.++..-.+. -..++.+.+.+
T Consensus 15 ~vlItGasggiG~~la~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-~~~~~~~~~~~ 81 (260)
T 3awd_A 15 VAIVTGGAQNIGLACVTALAE---------AGARV-IIA--DLDEAMATKAVEDLRMEGHDVSSVVMD-VTNTESVQNAV 81 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhcCCceEEEEec-CCCHHHHHHHH
Confidence 467777765544444444432 22345 333 234555666666777767665444333 34566666666
Q ss_pred hhhhh--cCCeEEEEecccc
Q 013729 318 SSAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 318 ~~~~~--~g~~v~i~~ag~~ 335 (437)
++..+ .+++++|-.||..
T Consensus 82 ~~~~~~~~~id~vi~~Ag~~ 101 (260)
T 3awd_A 82 RSVHEQEGRVDILVACAGIC 101 (260)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 54322 2678888888643
No 262
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.14 E-value=2.3e+02 Score=21.54 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 280 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
.|++-++++.+..+.+|..+-.-+. ...-.++.+|..+.+.+|++|.-+
T Consensus 59 ddkewaekairfvkslgaqvliiiy--dqdqnrleefsrevrrrgfevrtv 107 (134)
T 2l69_A 59 DDKEWAEKAIRFVKSLGAQVLIIIY--DQDQNRLEEFSREVRRRGFEVRTV 107 (134)
T ss_dssp SSHHHHHHHHHHHHHHCCCCEEEEE--CSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccHHHHHHHHHHHHhcCCeEEEEEE--eCchhHHHHHHHHHHhcCceEEEe
Confidence 4555566666666666655433332 233445555655555566555443
No 263
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=24.66 E-value=1.4e+02 Score=26.64 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=46.9
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHH-cCCcEEEEEecCCCChhHHHHh
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~-~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
.++++|.+..=-.+-+.+.++ ....| ++. +.+.+.++++.+.+.. .|.++..-.+. -.+++.+.++
T Consensus 22 ~vlVTGas~gIG~aia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~D-v~~~~~v~~~ 88 (266)
T 4egf_A 22 RALITGATKGIGADIARAFAA---------AGARL-VLS--GRDVSELDAARRALGEQFGTDVHTVAID-LAEPDAPAEL 88 (266)
T ss_dssp EEEETTTTSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHHHCCCEEEEECC-TTSTTHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHHhcCCcEEEEEec-CCCHHHHHHH
Confidence 366777665433333333332 22345 333 3456677777777765 67665444333 3456666666
Q ss_pred Hhhhhhc--CCeEEEEecccc
Q 013729 317 ASSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 317 ~~~~~~~--g~~v~i~~ag~~ 335 (437)
+++..++ +++++|-+||..
T Consensus 89 ~~~~~~~~g~id~lv~nAg~~ 109 (266)
T 4egf_A 89 ARRAAEAFGGLDVLVNNAGIS 109 (266)
T ss_dssp HHHHHHHHTSCSEEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCcC
Confidence 6544332 688888888753
No 264
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=24.60 E-value=1.9e+02 Score=25.36 Aligned_cols=85 Identities=9% Similarity=0.114 Sum_probs=45.9
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
++++|.+-.=-.+-+.+.++ ....| ++. ..++.+.++++.+.+...|.++..-.+. -..++.+.++++
T Consensus 7 vlVTGas~giG~~ia~~l~~---------~G~~V-~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~ 74 (246)
T 2uvd_A 7 ALVTGASRGIGRAIAIDLAK---------QGANV-VVN-YAGNEQKANEVVDEIKKLGSDAIAVRAD-VANAEDVTNMVK 74 (246)
T ss_dssp EEETTCSSHHHHHHHHHHHH---------TTCEE-EEE-ESSCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHH---------CCCEE-EEE-eCCCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHHH
Confidence 56666665433333333332 22344 332 2225566777777777777665433332 345666777665
Q ss_pred hhhh--cCCeEEEEecccc
Q 013729 319 SAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 319 ~~~~--~g~~v~i~~ag~~ 335 (437)
+..+ .+++++|-.||..
T Consensus 75 ~~~~~~g~id~lv~nAg~~ 93 (246)
T 2uvd_A 75 QTVDVFGQVDILVNNAGVT 93 (246)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 4332 2688888888643
No 265
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=24.55 E-value=3.1e+02 Score=24.58 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=35.3
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
.+++++|+|+.+ -.-..+++.|-+.|.++.+.- .+.++++.+.+ ++.|.++.....
T Consensus 8 ~GKvalVTGas~--GIG~aiA~~la~~Ga~Vvi~~---r~~~~~~~~~~---~~~g~~~~~~~~ 63 (247)
T 4hp8_A 8 EGRKALVTGANT--GLGQAIAVGLAAAGAEVVCAA---RRAPDETLDII---AKDGGNASALLI 63 (247)
T ss_dssp TTCEEEETTTTS--HHHHHHHHHHHHTTCEEEEEE---SSCCHHHHHHH---HHTTCCEEEEEC
T ss_pred CCCEEEEeCcCC--HHHHHHHHHHHHcCCEEEEEe---CCcHHHHHHHH---HHhCCcEEEEEc
Confidence 467778888775 666777888888888765552 33345555444 445666554443
No 266
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=24.44 E-value=2e+02 Score=25.88 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=44.2
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+..=-.+-+.+.++ ....| ++. +.+.+.+++..+.+...| .+..-.+. -..++.+.+++
T Consensus 31 ~vlVTGas~gIG~aia~~L~~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~-~~~~~~~D-v~d~~~v~~~~ 96 (276)
T 2b4q_A 31 IALVTGGSRGIGQMIAQGLLE---------AGARV-FIC--ARDAEACADTATRLSAYG-DCQAIPAD-LSSEAGARRLA 96 (276)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------TTCEE-EEE--CSCHHHHHHHHHHHTTSS-CEEECCCC-TTSHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhcC-ceEEEEee-CCCHHHHHHHH
Confidence 367777765544443443332 22244 333 345566666666666555 43322111 34566666666
Q ss_pred hhhhh--cCCeEEEEeccc
Q 013729 318 SSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~--~g~~v~i~~ag~ 334 (437)
++..+ .+++++|-+||.
T Consensus 97 ~~~~~~~g~iD~lvnnAg~ 115 (276)
T 2b4q_A 97 QALGELSARLDILVNNAGT 115 (276)
T ss_dssp HHHHHHCSCCSEEEECCCC
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 54332 268888888874
No 267
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=24.42 E-value=1.2e+02 Score=27.60 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcc--------cCCCCCCEEeccCC
Q 013729 285 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV--------AARTPLPVIGVPVR 356 (437)
Q Consensus 285 ~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i--------~~~~~~pVi~~p~~ 356 (437)
++++.+.+...|++++..+.. ++.|. ..+++.+++.+++.+|.+..+...+..++ ..+...||+-+|..
T Consensus 75 l~~~~~~~~~~~v~~~~~~~~-~g~~~--~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 75 IKQQARYYLEAGIQIDIKVIW-HNRPY--EAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp HHHHHHHHHHTTCCEEEEEEE-CSCHH--HHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESS
T ss_pred HHHHHHHHhhcCCeEEEEEEe-cCChH--HHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCc
Confidence 444455556678887777642 34442 33444445667887777664443444432 22456788888753
No 268
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=24.39 E-value=2.1e+02 Score=25.66 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhc--CCeEEEEecccc
Q 013729 281 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 281 D~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~--g~~v~i~~ag~~ 335 (437)
+.+.++++.+.+...|..+....+ --.+++.+.+++++..++ +++++|-+||..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~-Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~ 116 (280)
T 3pgx_A 61 SPEDLDETARLVEDQGRKALTRVL-DVRDDAALRELVADGMEQFGRLDVVVANAGVL 116 (280)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEEC-CTTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEc-CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 567777777777777776554433 367777777776544332 678888877643
No 269
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=24.38 E-value=1.7e+02 Score=27.09 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=46.4
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCC--cEEEEEecCCCChhHHHH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSV--PHEVRIVSAHRTPDLMFS 315 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~--~~~~~v~s~hr~p~~~~~ 315 (437)
.|+++|.+--=...-+.+.++ ....| +++ +.+.+.++++.+.+...|. .+..-.+. -..++.+.+
T Consensus 10 ~vlVTGas~gIG~~la~~l~~---------~G~~V-v~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~D-l~~~~~v~~ 76 (319)
T 3ioy_A 10 TAFVTGGANGVGIGLVRQLLN---------QGCKV-AIA--DIRQDSIDKALATLEAEGSGPEVMGVQLD-VASREGFKM 76 (319)
T ss_dssp EEEEETTTSTHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHHTCGGGEEEEECC-TTCHHHHHH
T ss_pred EEEEcCCchHHHHHHHHHHHH---------CCCEE-EEE--ECCHHHHHHHHHHHHhcCCCCeEEEEECC-CCCHHHHHH
Confidence 466777665544444444432 22344 333 3456677777777777665 44333222 345666666
Q ss_pred hHhhhhhc--CCeEEEEeccc
Q 013729 316 YASSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 316 ~~~~~~~~--g~~v~i~~ag~ 334 (437)
+++...+. +++++|-.||.
T Consensus 77 ~~~~~~~~~g~id~lv~nAg~ 97 (319)
T 3ioy_A 77 AADEVEARFGPVSILCNNAGV 97 (319)
T ss_dssp HHHHHHHHTCCEEEEEECCCC
T ss_pred HHHHHHHhCCCCCEEEECCCc
Confidence 66544332 57788888864
No 270
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=24.35 E-value=3.7e+02 Score=23.79 Aligned_cols=60 Identities=12% Similarity=0.011 Sum_probs=31.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCC---------CChhHHHHhHhh-h-hhcCCe-EEEEec
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAH---------RTPDLMFSYASS-A-HERGIE-IIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h---------r~p~~~~~~~~~-~-~~~g~~-v~i~~a 332 (437)
++|++++ +.....-....+.|.+.|+++..- .+.. -+++.+.+.+++ + ...|++ +++.|.
T Consensus 118 ~rvgllt--py~~~~~~~~~~~l~~~Giev~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~CT 189 (240)
T 3ixl_A 118 RRVALAT--AYIDDVNERLAAFLAEESLVPTGC-RSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSSG 189 (240)
T ss_dssp SEEEEEE--SSCHHHHHHHHHHHHHTTCEEEEE-EECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEECT
T ss_pred CEEEEEe--CChHHHHHHHHHHHHHCCCEEecc-ccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeCC
Confidence 4677775 333444455567778888874322 1211 235555555655 4 455666 333344
No 271
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=24.16 E-value=1.8e+02 Score=25.60 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=44.3
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
++++|.+..=-.+-+.+.++ ....| ++...+.+...+.+..+.+...|.++..-.+. -..++.+.++++
T Consensus 5 vlVTGas~gIG~~ia~~l~~---------~G~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~ 73 (258)
T 3a28_C 5 AMVTGGAQGIGRGISEKLAA---------DGFDI-AVADLPQQEEQAAETIKLIEAADQKAVFVGLD-VTDKANFDSAID 73 (258)
T ss_dssp EEEETTTSHHHHHHHHHHHH---------HTCEE-EEEECGGGHHHHHHHHHHHHTTTCCEEEEECC-TTCHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHH---------CCCEE-EEEeCCcchHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHH
Confidence 56677665433333333332 12245 33333322222666666666666555433322 345666666665
Q ss_pred hhhh--cCCeEEEEecccc
Q 013729 319 SAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 319 ~~~~--~g~~v~i~~ag~~ 335 (437)
+..+ .+++++|-.||..
T Consensus 74 ~~~~~~g~iD~lv~nAg~~ 92 (258)
T 3a28_C 74 EAAEKLGGFDVLVNNAGIA 92 (258)
T ss_dssp HHHHHHTCCCEEEECCCCC
T ss_pred HHHHHhCCCCEEEECCCCC
Confidence 4332 2688888888743
No 272
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...
Probab=24.04 E-value=87 Score=29.25 Aligned_cols=32 Identities=22% Similarity=-0.001 Sum_probs=22.8
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 302 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~ 302 (437)
++++|+|..++......+++.|.+.|.++.++
T Consensus 3 k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~ 34 (329)
T 3lt0_A 3 DICFIAGIGDTNGYGWGIAKELSKRNVKIIFG 34 (329)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCCchHHHHHHHHHHCCCEEEEE
Confidence 45688887665566777788888888776644
No 273
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=23.98 E-value=2.1e+02 Score=25.54 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=33.0
Q ss_pred eEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 271 RIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 271 ~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+|+++....++ ......+.+.++++|+ +++.+...+..++...++++.+..++++.+|+..
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~ 67 (309)
T 2fvy_A 4 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINL 67 (309)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHTCTT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEEeccCCcHHHHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 45566543333 1233444456666776 2333334556666666666666666777666543
No 274
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=23.88 E-value=40 Score=35.38 Aligned_cols=44 Identities=7% Similarity=0.001 Sum_probs=14.6
Q ss_pred cEEEEecCCCCCCcCeEEeCCHHHH-HHHHHHhcCCCCcEEEeeccCC
Q 013729 19 PLMVKSKRLAYDGRGNAVAKSEEEL-SSAITALGGFDRGLYVEKWAPF 65 (437)
Q Consensus 19 PvvvKP~~~g~gg~Gv~~v~~~~el-~~~~~~~~~~~~~~lvEe~I~g 65 (437)
..|+||..+ +.|.||.+.....+. .+........+ +++|+|++-
T Consensus 544 ~yV~KPi~g-ReG~nV~I~~~~~~~~~~~~g~y~~~~--~IyQe~~~l 588 (652)
T 2vob_A 544 GYAKKPIVG-RVGSNVIITSGDGVVHAESGGKYGKRN--MIYQQLFEL 588 (652)
T ss_dssp CEEEEECC----------------------------C--EEEEECCC-
T ss_pred CeEeccCCC-CCCCCEEEEcCCchhhhhcccccCCCC--eEEEecccC
Confidence 489999664 589999998653332 22211222334 999999984
No 275
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=23.83 E-value=3e+02 Score=25.01 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=30.7
Q ss_pred CCeEEEEEccCCCH---HHHHHHHHHHHHc-CCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEe
Q 013729 269 LPRIGIIMGSDSDL---PVMKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 269 ~~~V~ii~gs~sD~---~~~~~~~~~L~~~-G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
...|+++... ++- .....+.+.+++. |+.+.. ...+..++...+.++.+..++++-+|+.
T Consensus 6 ~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~~g~~l~i--~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 69 (325)
T 2x7x_A 6 HFRIGVAQCS-DDSWRHKMNDEILREAMFYNGVSVEI--RSAGDDNSKQAEDVHYFMDEGVDLLIIS 69 (325)
T ss_dssp CCEEEEEESC-CSHHHHHHHHHHHHHHTTSSSCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CeEEEEEecC-CCHHHHHHHHHHHHHHHHcCCcEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3456666544 331 1223334445555 665443 3445566655556655556667755554
No 276
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=23.80 E-value=1.6e+02 Score=28.47 Aligned_cols=58 Identities=10% Similarity=-0.025 Sum_probs=40.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
..|.|+..++.....+.++++.|+.. |+.++.... .++ +.+-++.+...|++..|++.
T Consensus 328 ~~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~~d~~--~~~---~~~~~~~a~~~g~p~~iiiG 387 (423)
T 1htt_A 328 VDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHG--GGN---FKKQFARADKWGARVAVVLG 387 (423)
T ss_dssp CSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEECCS--CCC---HHHHHHHHHHHTCSEEEEEC
T ss_pred CcEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEEEeCC--CCC---HHHHHHHHHHcCCCEEEEEC
Confidence 35656665555678889999999999 999887631 234 44445556788999666553
No 277
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=23.71 E-value=3.2e+02 Score=22.80 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=32.1
Q ss_pred EEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC
Q 013729 300 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 356 (437)
Q Consensus 300 ~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~ 356 (437)
.+-++|..|....+.+.++.++++|++++....-..+.|.... ....-+|-+|..
T Consensus 112 vvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~--~~ad~~l~~~~~ 166 (196)
T 2yva_A 112 VLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLL--GPQDVEIRIPSH 166 (196)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTC--CTTSEEEECSCS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcc--cCCCEEEEeCCC
Confidence 3445666777777888888889999986544321122232221 113457777763
No 278
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=23.71 E-value=2.5e+02 Score=24.93 Aligned_cols=85 Identities=9% Similarity=0.101 Sum_probs=48.4
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
++++|.+..=-.+-+++.++ ....| ++. ...+.+.++++.+.++..|..+....+. -..++.+.++++
T Consensus 21 ~lVTGas~gIG~aia~~l~~---------~G~~V-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~ 88 (270)
T 3is3_A 21 ALVTGSGRGIGAAVAVHLGR---------LGAKV-VVN-YANSTKDAEKVVSEIKALGSDAIAIKAD-IRQVPEIVKLFD 88 (270)
T ss_dssp EEESCTTSHHHHHHHHHHHH---------TTCEE-EEE-ESSCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHHH---------CCCEE-EEE-cCCCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHHH
Confidence 56666655433333333332 22345 332 2345566777788888888776544333 456777777765
Q ss_pred hhhhc--CCeEEEEecccc
Q 013729 319 SAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 319 ~~~~~--g~~v~i~~ag~~ 335 (437)
+..++ +++++|-+||..
T Consensus 89 ~~~~~~g~id~lvnnAg~~ 107 (270)
T 3is3_A 89 QAVAHFGHLDIAVSNSGVV 107 (270)
T ss_dssp HHHHHHSCCCEEECCCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 44332 678888887653
No 279
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=23.66 E-value=1.7e+02 Score=25.79 Aligned_cols=84 Identities=7% Similarity=0.059 Sum_probs=45.9
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.|+++|.+--=-..-+...++ ....| ++. +.+.+.+.+..+.+...|..+....+. -..++.+.+++
T Consensus 16 ~vlITGasggiG~~la~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~ 82 (266)
T 1xq1_A 16 TVLVTGGTKGIGHAIVEEFAG---------FGAVI-HTC--ARNEYELNECLSKWQKKGFQVTGSVCD-ASLRPEREKLM 82 (266)
T ss_dssp EEEETTTTSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhcCCeeEEEECC-CCCHHHHHHHH
Confidence 467777766544444444332 12244 222 234556666666677667665544333 34566666665
Q ss_pred hhhhh---cCCeEEEEeccc
Q 013729 318 SSAHE---RGIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~---~g~~v~i~~ag~ 334 (437)
++..+ .+++++|-.||.
T Consensus 83 ~~~~~~~~~~id~li~~Ag~ 102 (266)
T 1xq1_A 83 QTVSSMFGGKLDILINNLGA 102 (266)
T ss_dssp HHHHHHHTTCCSEEEEECCC
T ss_pred HHHHHHhCCCCcEEEECCCC
Confidence 44322 467888888864
No 280
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=23.60 E-value=60 Score=27.40 Aligned_cols=62 Identities=16% Similarity=0.098 Sum_probs=36.0
Q ss_pred CeEEEEEccCCCH---HHHHHHHHHHHHcCCcEE-EEEecCCCChhHHHHhHhhh--hhcCCeEEEEe
Q 013729 270 PRIGIIMGSDSDL---PVMKDAAKILTMFSVPHE-VRIVSAHRTPDLMFSYASSA--HERGIEIIIAG 331 (437)
Q Consensus 270 ~~V~ii~gs~sD~---~~~~~~~~~L~~~G~~~~-~~v~s~hr~p~~~~~~~~~~--~~~g~~v~i~~ 331 (437)
.+++||.+.-.+. .-+..+.+.|+++|.+++ .+|.++.=.|-...++.+.. ....++.+|+.
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaL 80 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVAL 80 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEE
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEe
Confidence 4687877554433 445566789999996553 55666655565444444210 01457766653
No 281
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=23.59 E-value=1.7e+02 Score=29.00 Aligned_cols=86 Identities=8% Similarity=-0.101 Sum_probs=51.1
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC--CCChhHHHHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA--HRTPDLMFSY 316 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~--hr~p~~~~~~ 316 (437)
+++++-+.+..+..+... +..+ ......|.|+..++.....+.++++.|+..|+.+++....- .++ +.+-
T Consensus 329 avGfa~gleRl~~~l~~~-~~~~----~~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~s---l~kq 400 (467)
T 4e51_A 329 ACGWAMGIERILELLKEE-HLVP----EQEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGAS---FKSQ 400 (467)
T ss_dssp EEEEEEEHHHHHHHHHHT-TCCC----CCCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEEECCCTTSSCCC---HHHH
T ss_pred ceeehHHHHHHHHHHHhc-CCcc----cCCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEEcccccccCC---HHHH
Confidence 345555666655554432 2111 11224565665555456678899999999999988873200 133 5555
Q ss_pred HhhhhhcCCeEEEEec
Q 013729 317 ASSAHERGIEIIIAGA 332 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~a 332 (437)
++.+...|++..+++.
T Consensus 401 ~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 401 MKRADASGAAFAVIFG 416 (467)
T ss_dssp HHHHHHTTCSEEEEEC
T ss_pred HHHHHHcCCCEEEEEC
Confidence 6666888999655544
No 282
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=23.49 E-value=3.8e+02 Score=23.62 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=40.3
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+..+|+++....++ ......+.+.++++|+.+.. ...+..++...++++.+..++++-+|+..
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~ 84 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLI--ACSEDQPDNEMRCIEHLLQRQVDAIIVST 84 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEE--EcCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34578787754433 23344555677788887654 34566777666777777777888666654
No 283
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB: 3ton_A*
Probab=23.42 E-value=2.4e+02 Score=30.77 Aligned_cols=95 Identities=9% Similarity=0.103 Sum_probs=65.7
Q ss_pred CceeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCC-----
Q 013729 233 QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAH----- 307 (437)
Q Consensus 233 ~~~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h----- 307 (437)
+..+=..+..|.+.++++++-.+..+.-..+ |...-|-- ...-+-.+...+.++++.+++.++|+++-+....
T Consensus 258 gG~lD~y~~~Gptp~~Vi~qYt~LtG~p~mp-P~WalGy~-qsR~~Y~~~~ev~~vv~~~r~~~IPlDvi~~Didym~~~ 335 (908)
T 3top_A 258 GGVLDFYVFLGPTPELVTQQYTELIGRPVMV-PYWSLGFQ-LCRYGYQNDSEIASLYDEMVAAQIPYDVQYSDIDYMERQ 335 (908)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHHCCCCCC-CGGGGSCE-ECCTTCCSHHHHHHHHHHHHHHTCCCCEEEECGGGSSTT
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHhCCCCCC-Chhhhhcc-cccccCCCHHHHHHHHHHHHHcCCCeeeEEeeccccccc
Confidence 4556667778999999999999998874421 22222222 1122445678899999999999999998875432
Q ss_pred -------CChhHHHHhHhhhhhcCCeEEEE
Q 013729 308 -------RTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 308 -------r~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
|-| ...++++++++.|+++++.
T Consensus 336 ~~FT~d~~FP-dp~~mv~~Lh~~G~k~v~i 364 (908)
T 3top_A 336 LDFTLSPKFA-GFPALINRMKADGMRVILI 364 (908)
T ss_dssp CTTCCCGGGT-THHHHHHHHHHHTCEEEEE
T ss_pred cccccCCCCC-CHHHHHHHHHHCCCEEEEE
Confidence 333 2566777778999995544
No 284
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=23.26 E-value=1.8e+02 Score=21.77 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=23.7
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHH
Q 013729 387 TNAGLLAVRMLGFGDADLRARMQQYME 413 (437)
Q Consensus 387 ~~aa~~a~~~l~~~~~~~~~~~~~~~~ 413 (437)
..+++.|+..|...||.+++.|..|+.
T Consensus 41 ~q~~v~ai~sl~~qDpnV~kDLdn~~a 67 (97)
T 3g80_A 41 AQETQATIQTLMIADPNVNKDLRAFCE 67 (97)
T ss_dssp HHHHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCchHHHHHHHHHH
Confidence 357888888899999999999999986
No 285
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=23.15 E-value=1.6e+02 Score=26.74 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=38.9
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeE
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEI 327 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v 327 (437)
++|.|++|.-.+=....-+++.|...|+++++-..+..+..+....-++.++.-|.++
T Consensus 86 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~a~~~~~~~~~~g~~~ 143 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQ 143 (259)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCBCSSCCHHHHHHHHHHTTSSCEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHHcCCCc
Confidence 4788999988888888999999999999987754443222233333344445555543
No 286
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=22.94 E-value=1.5e+02 Score=22.20 Aligned_cols=38 Identities=8% Similarity=-0.155 Sum_probs=28.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 278 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 278 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
+.+.-+.+..+.+.|++.|++|+-. .....|+....+.
T Consensus 10 s~~~Cp~C~~aK~~L~~~gi~y~~i--di~~d~~~~~~~~ 47 (92)
T 2lqo_A 10 TTSWCGYCLRLKTALTANRIAYDEV--DIEHNRAAAEFVG 47 (92)
T ss_dssp ECTTCSSHHHHHHHHHHTTCCCEEE--ETTTCHHHHHHHH
T ss_pred cCCCCHhHHHHHHHHHhcCCceEEE--EcCCCHHHHHHHH
Confidence 4567799999999999999998755 3456777555554
No 287
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=22.92 E-value=2.3e+02 Score=25.29 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEecccc
Q 013729 281 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 281 D~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~~ 335 (437)
+...+.+..+.+...|..+....+ --.+++.+.+++++..+ ..++++|-+||..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~ 112 (277)
T 3tsc_A 57 SPDDLSETVRLVEAANRRIVAAVV-DTRDFDRLRKVVDDGVAALGRLDIIVANAGVA 112 (277)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEC-CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEC-CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 566677777777777766554433 26677777776654332 2577888777643
No 288
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=22.86 E-value=3e+02 Score=27.18 Aligned_cols=88 Identities=16% Similarity=-0.042 Sum_probs=55.5
Q ss_pred eEEEEEEcCCHHHHHHHHHHhhc-cCCcccccCCCCeEEEEEccCC---CHHHHHHHHHHHHHc--------------CC
Q 013729 236 MGHITIVGSSMGLVESRLNSLLK-EDSSDCQFKILPRIGIIMGSDS---DLPVMKDAAKILTMF--------------SV 297 (437)
Q Consensus 236 ~G~Vi~~G~s~~eA~~k~~~a~~-~i~~~~~~~~~~~V~ii~gs~s---D~~~~~~~~~~L~~~--------------G~ 297 (437)
++|=.++| +.+-.+..+....+ .++.. ..+..|.|+..++. -.+.+.++.+.|+.. |+
T Consensus 315 ~ih~~~~G-g~eRli~~Lie~~~g~~P~~---laP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi 390 (460)
T 3uh0_A 315 MIHRATFG-SIERFMALLIDSNEGRWPFW---LNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHF 390 (460)
T ss_dssp EEEEEEEE-EHHHHHHHHHHHHTTCCCGG---GCSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCC
T ss_pred EEecCcch-HHHHHHHHHHHHcCCCCCCC---CCCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCE
Confidence 45556788 77777766655432 23321 13345767777766 357788888899887 89
Q ss_pred cEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 298 PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 298 ~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
.+++... .++ +-+=++++...|++..+++.
T Consensus 391 ~v~~D~~--~~~---lg~k~r~Ad~~g~p~~ivvG 420 (460)
T 3uh0_A 391 NVDLDIR--NEP---VGYRIKSAILKNYSYLIIVG 420 (460)
T ss_dssp CEEECCC--SSC---HHHHHHHHHHHTCSEEEEEC
T ss_pred EEEEECC--CCC---HHHHHHHHHHcCCCEEEEEc
Confidence 9888732 133 44445566788999666554
No 289
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=22.86 E-value=1.3e+02 Score=26.39 Aligned_cols=55 Identities=5% Similarity=0.028 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHcCC-cEEEEEecC-CCChhHHHHhHhhhhhc--CCeEEEEeccc
Q 013729 280 SDLPVMKDAAKILTMFSV-PHEVRIVSA-HRTPDLMFSYASSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~-~~~~~v~s~-hr~p~~~~~~~~~~~~~--g~~v~i~~ag~ 334 (437)
.+.+.++++.+.++..|. ......... ..+++.+.++.++..+. +++++|-.||.
T Consensus 46 r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~g~id~lv~nAg~ 104 (247)
T 3i1j_A 46 RTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASI 104 (247)
T ss_dssp SCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred cCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 455667777777776663 222222221 14455566655544332 57788877764
No 290
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=22.84 E-value=3.3e+02 Score=24.83 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=9.1
Q ss_pred cEEEEEEcCCCC
Q 013729 141 QILLNEVAPRPH 152 (437)
Q Consensus 141 ~~~viEiNpR~~ 152 (437)
++.++|+-+|=|
T Consensus 4 ~v~i~d~tlRDG 15 (295)
T 1ydn_A 4 HVEIVEMAARDG 15 (295)
T ss_dssp BCEEEECTTTHH
T ss_pred ceEEEECCCCcc
Confidence 477888888865
No 291
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=22.75 E-value=1.3e+02 Score=29.17 Aligned_cols=63 Identities=24% Similarity=0.285 Sum_probs=38.7
Q ss_pred HHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC--CCCC--CChhhHHHhhhCCCCCc-eEEEEeCCc
Q 013729 312 LMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASAL--DGLDSLLSIVQMPRGVP-VATVAINNA 386 (437)
Q Consensus 312 ~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~--~~~~--~g~~~l~~~~~~~~gvp-~~tv~~~~~ 386 (437)
++.+++.++++.|- .+.|+| ..-+-|||.. +.-+ +.+|+-|+.+-|. || |=-|.|+.+
T Consensus 199 ~m~~~I~~ak~~GD-----------S~GGvv----evv~~gvP~GLG~pvf~d~kLda~LA~AlmS--I~AvKGvEiG~G 261 (388)
T 1qxo_A 199 EIKDYIDQIKRDGD-----------TIGGVV----ETVVGGVPVGLGSYVQWDRKLDARLAQAVVS--INAFKGVEFGLG 261 (388)
T ss_dssp HHHHHHHHHHHTTC-----------CBCEEE----EEEEESCCTTCSCSSSGGGCHHHHHHHHHHT--STTEEEEEETTG
T ss_pred HHHHHHHHHHHhCC-----------CCceEE----EEEEecCCCCcCCcccccccchHHHHHHhcC--cCceeEEEECcc
Confidence 45556666666542 333332 3445677775 2224 6899999877774 44 448899988
Q ss_pred chHHH
Q 013729 387 TNAGL 391 (437)
Q Consensus 387 ~~aa~ 391 (437)
+.+|.
T Consensus 262 F~~a~ 266 (388)
T 1qxo_A 262 FEAGY 266 (388)
T ss_dssp GGGGG
T ss_pred hhhhh
Confidence 87654
No 292
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=22.70 E-value=2.3e+02 Score=25.54 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=41.6
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC-------------CCChhHHHHhHhhhhh--cCCeEEEEecc
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA-------------HRTPDLMFSYASSAHE--RGIEIIIAGAG 333 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~-------------hr~p~~~~~~~~~~~~--~g~~v~i~~ag 333 (437)
++++++|+|+.+ ..-..+++.|-+.|.++.+.--+. -..++.+.++++...+ .+++++|-+||
T Consensus 10 ~GK~alVTGas~--GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnAG 87 (261)
T 4h15_A 10 RGKRALITAGTK--GAGAATVSLFLELGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQRLGGVDVIVHMLG 87 (261)
T ss_dssp TTCEEEESCCSS--HHHHHHHHHHHHTTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEEECCC
T ss_pred CCCEEEEeccCc--HHHHHHHHHHHHcCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 467779999876 566778888999998865542111 1234555555554333 25778888877
Q ss_pred cc
Q 013729 334 GA 335 (437)
Q Consensus 334 ~~ 335 (437)
..
T Consensus 88 ~~ 89 (261)
T 4h15_A 88 GS 89 (261)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 293
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.80A {Thermus thermophilus}
Probab=22.66 E-value=60 Score=22.88 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=18.4
Q ss_pred EEEcCCHHHHHHHHHHhhcc
Q 013729 240 TIVGSSMGLVESRLNSLLKE 259 (437)
Q Consensus 240 i~~G~s~~eA~~k~~~a~~~ 259 (437)
+..|+|.+||+..++.++..
T Consensus 27 ~t~G~T~eEa~~~~~eAi~~ 46 (67)
T 2yzt_A 27 HTQAQSFEELLRRLQEAIAV 46 (67)
T ss_dssp EEEESSHHHHHHHHHHHHHH
T ss_pred ceeeCCHHHHHHHHHHHHHH
Confidence 78999999999999999874
No 294
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=22.54 E-value=3e+02 Score=24.62 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=50.2
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+..=-.+-+.+.++ ....| ++. ..++.+..+++.+.+...|..+..-.+. -..++.+.+++
T Consensus 33 ~~lVTGas~GIG~aia~~la~---------~G~~V-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~ 100 (271)
T 3v2g_A 33 TAFVTGGSRGIGAAIAKRLAL---------EGAAV-ALT-YVNAAERAQAVVSEIEQAGGRAVAIRAD-NRDAEAIEQAI 100 (271)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------TTCEE-EEE-ESSCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHH---------CCCEE-EEE-eCCCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHH
Confidence 366777665433333333332 22345 332 2445677788888888888776544333 46677777776
Q ss_pred hhhhhc--CCeEEEEeccc
Q 013729 318 SSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 318 ~~~~~~--g~~v~i~~ag~ 334 (437)
++..++ +++++|-+||.
T Consensus 101 ~~~~~~~g~iD~lvnnAg~ 119 (271)
T 3v2g_A 101 RETVEALGGLDILVNSAGI 119 (271)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHcCCCcEEEECCCC
Confidence 544332 68888888864
No 295
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=22.50 E-value=1.3e+02 Score=23.92 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=34.7
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEE
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 330 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~ 330 (437)
.++| +|.|.. .....+++.|.+.|+++.+- .++|++..++. +.|+.++..
T Consensus 7 ~~~v-iIiG~G---~~G~~la~~L~~~g~~v~vi----d~~~~~~~~~~----~~g~~~i~g 56 (140)
T 3fwz_A 7 CNHA-LLVGYG---RVGSLLGEKLLASDIPLVVI----ETSRTRVDELR----ERGVRAVLG 56 (140)
T ss_dssp CSCE-EEECCS---HHHHHHHHHHHHTTCCEEEE----ESCHHHHHHHH----HTTCEEEES
T ss_pred CCCE-EEECcC---HHHHHHHHHHHHCCCCEEEE----ECCHHHHHHHH----HcCCCEEEC
Confidence 3566 566654 67888899999999886666 67777665543 457776553
No 296
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=22.45 E-value=2.1e+02 Score=25.42 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=42.1
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
.+++++|+|+.+ .....+++.|.+.|.++.+... ..|+.+++.+..++++..|.++.....
T Consensus 10 ~~k~vlVTGas~--GIG~aia~~la~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (262)
T 3ksu_A 10 KNKVIVIAGGIK--NLGALTAKTFALESVNLVLHYH-QAKDSDTANKLKDELEDQGAKVALYQS 70 (262)
T ss_dssp TTCEEEEETCSS--HHHHHHHHHHTTSSCEEEEEES-CGGGHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCEEEEECCCc--hHHHHHHHHHHHCCCEEEEEec-CccCHHHHHHHHHHHHhcCCcEEEEEC
Confidence 356679999875 5678888999999988666421 134556666777666666777666544
No 297
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=22.41 E-value=1.3e+02 Score=28.87 Aligned_cols=64 Identities=23% Similarity=0.159 Sum_probs=39.7
Q ss_pred hHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEeccCC--CCCCCChhhHHHhhhCCCCCc-eEEEEeCCcc
Q 013729 311 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNAT 387 (437)
Q Consensus 311 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~--~~~~~g~~~l~~~~~~~~gvp-~~tv~~~~~~ 387 (437)
+++.+++.++++.|- .+.|+| ..-+-|||.. +..++.+|+-|+.+-|. || |=-|.|+.++
T Consensus 187 ~~m~~~I~~~k~~gD-----------S~GGvv----e~v~~gvP~GLG~pvfdkLda~LA~AlmS--I~AvKGvEiG~GF 249 (370)
T 1sq1_A 187 SDFKNEILNARNSKD-----------SVGAAV----FTKVSGMLIGLGEVLYDKLDSKLAHALMG--INAVKAVEIGEGI 249 (370)
T ss_dssp HHHHHHHHHHHHTTC-----------CCCEEE----EEEEESCCBSCSBTTTBCHHHHHHHHHHT--STTEEEEEETTGG
T ss_pred HHHHHHHHHHHHhCC-----------CCeEEE----EEEEEcCCCCCCCcccccchHHHHHHhcC--ccceeEEEeccch
Confidence 456777777777652 222222 3344566664 23377889888777773 33 4488999888
Q ss_pred hHHH
Q 013729 388 NAGL 391 (437)
Q Consensus 388 ~aa~ 391 (437)
.+|.
T Consensus 250 ~~a~ 253 (370)
T 1sq1_A 250 NASK 253 (370)
T ss_dssp GGGG
T ss_pred hhhh
Confidence 7664
No 298
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=22.34 E-value=2.4e+02 Score=25.28 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC----------------hhHHHHhHhhhhhcCCeEEEEec
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT----------------PDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~----------------p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
.+++++|+|+.+ .....+++.|.+.|.++.+. .|+ ++++.+..+..+..|.++.....
T Consensus 10 ~~k~~lVTGas~--gIG~aia~~la~~G~~V~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (286)
T 3uve_A 10 EGKVAFVTGAAR--GQGRSHAVRLAQEGADIIAV----DICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEV 83 (286)
T ss_dssp TTCEEEEESTTS--HHHHHHHHHHHHTTCEEEEE----ECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCCEEEEeCCCc--hHHHHHHHHHHHCCCeEEEE----eccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEc
No 299
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=22.20 E-value=3.3e+02 Score=24.46 Aligned_cols=46 Identities=9% Similarity=0.045 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 286 KDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 286 ~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
..+.+.++++|+.+..... .+.++++..+.++.+..++++.+|+..
T Consensus 20 ~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~ 65 (313)
T 2h3h_A 20 QGVKAAGKALGVDTKFFVP-QKEDINAQLQMLESFIAEGVNGIAIAP 65 (313)
T ss_dssp HHHHHHHHHHTCEEEEECC-SSSCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHcCCEEEEECC-CCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3344556667766544321 245566555666665566777666543
No 300
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=22.18 E-value=3.1e+02 Score=24.54 Aligned_cols=62 Identities=10% Similarity=0.082 Sum_probs=39.5
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC-----------------CCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA-----------------HRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~-----------------hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
|++++|+|+.+ -.-..+++.|.+.|.++.+.-.+. -..++.+.++++++ .+++++|-+|
T Consensus 11 GK~alVTGas~--GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~--g~iDiLVNNA 86 (242)
T 4b79_A 11 GQQVLVTGGSS--GIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEAL--PRLDVLVNNA 86 (242)
T ss_dssp TCEEEEETTTS--HHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHC--SCCSEEEECC
T ss_pred CCEEEEeCCCC--HHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhc--CCCCEEEECC
Confidence 67778888775 566777788888887765442211 12355666666544 3477888777
Q ss_pred ccc
Q 013729 333 GGA 335 (437)
Q Consensus 333 g~~ 335 (437)
|..
T Consensus 87 Gi~ 89 (242)
T 4b79_A 87 GIS 89 (242)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 301
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=22.17 E-value=2.8e+02 Score=25.28 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhccCCcc-------cccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 247 GLVESRLNSLLKEDSSD-------CQFKILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 247 ~eA~~k~~~a~~~i~~~-------~~~~~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
++..++..++++++... ....+...|+++....++ ......+.+.+++.|+.+... ..+..+++..++
T Consensus 31 ~~tr~rV~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~ 108 (332)
T 2hsg_A 31 PSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILS--NSDQNQDKELHL 108 (332)
T ss_dssp HHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEE--ECCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE--eCCCChHHHHHH
Confidence 45556666555543321 011234578888754333 234455567778899876554 345566666677
Q ss_pred HhhhhhcCCeEEEEeccc-cccccCcccCCCCCCEEec
Q 013729 317 ASSAHERGIEIIIAGAGG-AAHLPGMVAARTPLPVIGV 353 (437)
Q Consensus 317 ~~~~~~~g~~v~i~~ag~-~~~l~~~i~~~~~~pVi~~ 353 (437)
++.+..++++-+|..... .......+. ....|||.+
T Consensus 109 ~~~l~~~~vdgiI~~~~~~~~~~~~~l~-~~~iPvV~~ 145 (332)
T 2hsg_A 109 LNNMLGKQVDGIIFMSGNVTEEHVEELK-KSPVPVVLA 145 (332)
T ss_dssp HHHTSCCSSCCEEECCSSCCHHHHHHHT-TSSSCEEEE
T ss_pred HHHHHhCCCcEEEEecCCCCHHHHHHHH-hCCCCEEEE
Confidence 777777788866654321 111111221 245677765
No 302
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=22.14 E-value=1.8e+02 Score=26.64 Aligned_cols=85 Identities=9% Similarity=0.085 Sum_probs=45.0
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcC-CcEEEEEecCCCChhHHHHh
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFS-VPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G-~~~~~~v~s~hr~p~~~~~~ 316 (437)
.++++|.+..=-..-+.+.++ ....| ++. +.+.+.++++.+.+...| -.+..-.+. -..++.+.++
T Consensus 43 ~vlVTGas~GIG~aia~~la~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~D-v~d~~~v~~~ 109 (293)
T 3rih_A 43 SVLVTGGTKGIGRGIATVFAR---------AGANV-AVA--ARSPRELSSVTAELGELGAGNVIGVRLD-VSDPGSCADA 109 (293)
T ss_dssp EEEETTTTSHHHHHHHHHHHH---------TTCEE-EEE--ESSGGGGHHHHHHHTTSSSSCEEEEECC-TTCHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHH---------CCCEE-EEE--ECCHHHHHHHHHHHHhhCCCcEEEEEEe-CCCHHHHHHH
Confidence 366777665544333333332 22345 333 234455667777777766 343333222 3456666666
Q ss_pred Hhhhhh--cCCeEEEEecccc
Q 013729 317 ASSAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 317 ~~~~~~--~g~~v~i~~ag~~ 335 (437)
+++..+ .+++++|-.||..
T Consensus 110 ~~~~~~~~g~iD~lvnnAg~~ 130 (293)
T 3rih_A 110 ARTVVDAFGALDVVCANAGIF 130 (293)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 654422 2678888887643
No 303
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=21.96 E-value=2.8e+02 Score=24.19 Aligned_cols=55 Identities=7% Similarity=0.053 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhc--CCeEEEEecccc
Q 013729 280 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~--g~~v~i~~ag~~ 335 (437)
.+.+.++++.+.++..|.++..-.+. -.+++.+.+++++..++ +++++|-.||..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~id~lv~nAg~~ 93 (246)
T 3osu_A 37 GSKEKAEAVVEEIKAKGVDSFAIQAN-VADADEVKAMIKEVVSQFGSLDVLVNNAGIT 93 (246)
T ss_dssp SCHHHHHHHHHHHHHTTSCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 35567777777788877775543332 45666677766544332 678888877643
No 304
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=21.91 E-value=2.1e+02 Score=26.66 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=25.8
Q ss_pred HHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 293 TMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 293 ~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+++|++.-.+.....++.+.+.+.+..+.+.|++=+.+..
T Consensus 79 ~~~g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nILaLr 118 (304)
T 3fst_A 79 DRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALR 118 (304)
T ss_dssp HHHCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHhCCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEEEEec
Confidence 4467776666666667777777776666666776444444
No 305
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=21.88 E-value=1.5e+02 Score=27.16 Aligned_cols=64 Identities=8% Similarity=0.121 Sum_probs=48.7
Q ss_pred HHHHcCCcEEEEE-ec--CCCChhHHHHhHhhhhhcCCeEEEEeccccccccCcccCCCCCCEEecc
Q 013729 291 ILTMFSVPHEVRI-VS--AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVP 354 (437)
Q Consensus 291 ~L~~~G~~~~~~v-~s--~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p 354 (437)
..+.+|++..... .+ ..=+|.++.++.+..++++++++.+-...++.+...|+..+-.+|+.+.
T Consensus 190 f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l~ 256 (284)
T 3cx3_A 190 LAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKTLN 256 (284)
T ss_dssp HHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEEECC
T ss_pred HHHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeEEEec
Confidence 3367999965443 22 3456888999999999999998888777777788888888888887763
No 306
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=21.87 E-value=1.9e+02 Score=25.93 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=44.7
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCC---cEEEEEecCCCChhHHHH
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSV---PHEVRIVSAHRTPDLMFS 315 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~---~~~~~v~s~hr~p~~~~~ 315 (437)
++++|.+..=-.+-+.+.++ ....| ++. +.+.+.+++..+.+...|. .+..-.+. -..++.+.+
T Consensus 9 vlVTGas~gIG~~ia~~l~~---------~G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~ 75 (280)
T 1xkq_A 9 VIITGSSNGIGRTTAILFAQ---------EGANV-TIT--GRSSERLEETRQIILKSGVSEKQVNSVVAD-VTTEDGQDQ 75 (280)
T ss_dssp EEETTCSSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHTTTCCGGGEEEEECC-TTSHHHHHH
T ss_pred EEEECCCChHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHHcCCCCcceEEEEec-CCCHHHHHH
Confidence 66667665433333333332 22345 333 3455666666666666555 44433222 355666666
Q ss_pred hHhhhhh--cCCeEEEEecccc
Q 013729 316 YASSAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 316 ~~~~~~~--~g~~v~i~~ag~~ 335 (437)
++++..+ .+++++|-+||..
T Consensus 76 ~~~~~~~~~g~iD~lv~nAg~~ 97 (280)
T 1xkq_A 76 IINSTLKQFGKIDVLVNNAGAA 97 (280)
T ss_dssp HHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHhcCCCCEEEECCCCC
Confidence 6654322 2588888888753
No 307
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=21.78 E-value=1.8e+02 Score=22.46 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=26.0
Q ss_pred cCC-cEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEeccccccccCc
Q 013729 295 FSV-PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGM 341 (437)
Q Consensus 295 ~G~-~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~ 341 (437)
.|+ +++..+. ++.|. ..+++.+++.+++.++.++.+...+..+
T Consensus 73 ~g~~~~~~~~~--~g~~~--~~I~~~a~~~~~dliV~G~~~~~~~~~~ 116 (137)
T 2z08_A 73 TGVPKEDALLL--EGVPA--EAILQAARAEKADLIVMGTRGLGALGSL 116 (137)
T ss_dssp HCCCGGGEEEE--ESSHH--HHHHHHHHHTTCSEEEEESSCTTCCSCS
T ss_pred cCCCccEEEEE--ecCHH--HHHHHHHHHcCCCEEEECCCCCchhhhh
Confidence 687 6655544 45553 4455556777899888876444444443
No 308
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=21.68 E-value=1.7e+02 Score=28.28 Aligned_cols=84 Identities=11% Similarity=-0.033 Sum_probs=49.9
Q ss_pred EEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhh
Q 013729 240 TIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASS 319 (437)
Q Consensus 240 i~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~ 319 (437)
++++-+.+..+..+.. .+ +.+ +......|.|+..++.....+.++++.|+..|+.++.... .++ +.+-++.
T Consensus 304 vg~~igveRl~~~le~-~~-~~~--p~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~--~~~---~~~~~~~ 374 (420)
T 1qe0_A 304 IGFALSIERLLLALEE-EG-IEL--DIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYL--QRK---IKGQMKQ 374 (420)
T ss_dssp EEEEEEHHHHHHHHHH-TT-CCC--CCCCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCS--CCC---HHHHHHH
T ss_pred EEEEecHHHHHHHHHh-cC-CCC--CCCCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEecC--CCC---HHHHHHH
Confidence 4666666665554432 11 111 1113345656655545567788889999999999887631 233 3444455
Q ss_pred hhhcCCeEEEEec
Q 013729 320 AHERGIEIIIAGA 332 (437)
Q Consensus 320 ~~~~g~~v~i~~a 332 (437)
++..|++..+++.
T Consensus 375 a~~~g~p~~iiig 387 (420)
T 1qe0_A 375 ADRLGAKFTIVIG 387 (420)
T ss_dssp HHHTTCSEEEEEC
T ss_pred HHHcCCCEEEEEC
Confidence 6788999666553
No 309
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase family 31, (beta/alpha)8 barre; HET: PXN; 2.30A {Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Probab=21.67 E-value=4.2e+02 Score=29.26 Aligned_cols=94 Identities=11% Similarity=-0.018 Sum_probs=64.3
Q ss_pred eeEEEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCC-------
Q 013729 235 KMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAH------- 307 (437)
Q Consensus 235 ~~G~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h------- 307 (437)
.+-..+..|.|..++.++-.+..+.-..+ |...-|.. -..-...+.+.+.++++.+++.|+++++-+...+
T Consensus 402 ~lDyy~~~G~tp~~Vv~~Yt~LTGrp~mp-P~WalG~w-qsr~~Y~sq~ev~~va~~~re~gIPlDvi~lD~~y~~~~~~ 479 (1020)
T 2xvl_A 402 AIDYYFVAGDTKDDIISGYRQLTGKSVML-PKWAYGFW-QSRERYKSSDEIIQNLKEYRDRKIPIDNIVLDWSYWPEDAW 479 (1020)
T ss_dssp SEEEEEEECSSHHHHHHHHHHHHCCCCCC-CGGGGSEE-ECCTTCCSHHHHHHHHHHHHHTTCCCCEEEECSCCSCTTCT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHhCCCCCC-Ccceecee-eecCCCCCHHHHHHHHHHHHHcCCCcceEEEeccccccCcc
Confidence 34456778999999999998888864321 21122222 1122345678899999999999999888776542
Q ss_pred --------CChhHHHHhHhhhhhcCCeEEEEe
Q 013729 308 --------RTPDLMFSYASSAHERGIEIIIAG 331 (437)
Q Consensus 308 --------r~p~~~~~~~~~~~~~g~~v~i~~ 331 (437)
|-|+ ..++++++++.|+++.+.+
T Consensus 480 ~dFtwD~~rFPd-p~~mv~~Lh~~G~k~vl~V 510 (1020)
T 2xvl_A 480 GSHDFDKQFFPD-PKALVDKVHAMNAQIMISV 510 (1020)
T ss_dssp TSCCCCTTTCSC-HHHHHHHHHHTTCEEEEEE
T ss_pred cceEEChhhCCC-HHHHHHHHHHCCCEEEEEE
Confidence 2344 5677788889999966543
No 310
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=21.67 E-value=1.8e+02 Score=27.51 Aligned_cols=45 Identities=2% Similarity=-0.056 Sum_probs=20.6
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCChhHHHHhHhhhhh
Q 013729 277 GSDSDLPVMKDAAKILTMFSVPHE--VRIVSAHRTPDLMFSYASSAHE 322 (437)
Q Consensus 277 gs~sD~~~~~~~~~~L~~~G~~~~--~~v~s~hr~p~~~~~~~~~~~~ 322 (437)
.+.++.+.+.++++.+.++|..+- ...++ ..+|+.+.++++.+++
T Consensus 143 a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G-~~~P~~v~~lv~~l~~ 189 (345)
T 1nvm_A 143 SHMIPAEKLAEQGKLMESYGATCIYMADSGG-AMSMNDIRDRMRAFKA 189 (345)
T ss_dssp TTSSCHHHHHHHHHHHHHHTCSEEEEECTTC-CCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCcC-ccCHHHHHHHHHHHHH
Confidence 344455555555555555555421 11111 3345555555544433
No 311
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=21.64 E-value=61 Score=31.88 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=23.3
Q ss_pred EecCCCChhHHHHhHhhhhhcCCeEEE
Q 013729 303 IVSAHRTPDLMFSYASSAHERGIEIII 329 (437)
Q Consensus 303 v~s~hr~p~~~~~~~~~~~~~g~~v~i 329 (437)
+-+-.+|++++.++++++.++|++|++
T Consensus 69 i~~~~Gt~~df~~lv~~aH~~Gi~Vil 95 (496)
T 4gqr_A 69 LCTRSGNEDEFRNMVTRCNNVGVRIYV 95 (496)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTCEEEE
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 445689999999999999999999763
No 312
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=21.55 E-value=2.1e+02 Score=26.65 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=47.9
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEE--ccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIM--GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~--gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~ 316 (437)
++++|.+..=-..-+...++ ...+|.+.+ ..+.+.+.++++.+.+...|..+..-.+. -..++.+.++
T Consensus 8 vlVTGas~GIG~aia~~L~~---------~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~D-vtd~~~v~~~ 77 (324)
T 3u9l_A 8 ILITGASSGFGRLTAEALAG---------AGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELD-VQSQVSVDRA 77 (324)
T ss_dssp EEESSCSSHHHHHHHHHHHH---------TTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHH---------CCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEee-cCCHHHHHHH
Confidence 56667665444444443332 223442221 23455677777777777777665544333 3456666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013729 317 ASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 317 ~~~~~~--~g~~v~i~~ag~ 334 (437)
+++..+ .+++++|-+||.
T Consensus 78 ~~~~~~~~g~iD~lVnnAG~ 97 (324)
T 3u9l_A 78 IDQIIGEDGRIDVLIHNAGH 97 (324)
T ss_dssp HHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCc
Confidence 654432 268899988873
No 313
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=21.47 E-value=2.3e+02 Score=23.66 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=38.6
Q ss_pred CCCeEEEEEccCC-------CHHHHHHHHHHHHHcCCcEE-EEEecCCCChhHHHHhHhhhhhcCCeEEEEecccccccc
Q 013729 268 ILPRIGIIMGSDS-------DLPVMKDAAKILTMFSVPHE-VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLP 339 (437)
Q Consensus 268 ~~~~V~ii~gs~s-------D~~~~~~~~~~L~~~G~~~~-~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~ag~~~~l~ 339 (437)
+.++|+||+.+|. |. ...-++..|+++|+++. ..++. . . +.+.+.++++-+.+++++|+..|.+..--
T Consensus 6 ~~~rv~ii~tGdEl~~G~i~Ds-n~~~l~~~l~~~G~~v~~~~iv~-D-d-~~i~~al~~a~~~~~DlVittGG~s~g~~ 81 (164)
T 3pzy_A 6 TTRSARVIIASTRASSGEYEDR-CGPIITEWLAQQGFSSAQPEVVA-D-G-SPVGEALRKAIDDDVDVILTSGGTGIAPT 81 (164)
T ss_dssp -CCEEEEEEECHHHHC----CC-HHHHHHHHHHHTTCEECCCEEEC-S-S-HHHHHHHHHHHHTTCSEEEEESCCSSSTT
T ss_pred CCCEEEEEEECCCCCCCceeeH-HHHHHHHHHHHCCCEEEEEEEeC-C-H-HHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 3456667765531 11 12345668889998853 33332 2 2 45555555544346888888776654444
Q ss_pred Cc
Q 013729 340 GM 341 (437)
Q Consensus 340 ~~ 341 (437)
++
T Consensus 82 D~ 83 (164)
T 3pzy_A 82 DS 83 (164)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 314
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=21.46 E-value=2.9e+02 Score=24.57 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=49.2
Q ss_pred EEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHh
Q 013729 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 318 (437)
Q Consensus 239 Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~ 318 (437)
++++|.+..=-.+-+.+.++ ....| ++. ..++.+..+++.+.+...|..+....+. -.+++.+.++++
T Consensus 30 ~lVTGas~GIG~aia~~la~---------~G~~V-v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~v~~~~~ 97 (267)
T 3u5t_A 30 AIVTGASRGIGAAIAARLAS---------DGFTV-VIN-YAGKAAAAEEVAGKIEAAGGKALTAQAD-VSDPAAVRRLFA 97 (267)
T ss_dssp EEEESCSSHHHHHHHHHHHH---------HTCEE-EEE-ESSCSHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHH---------CCCEE-EEE-cCCCHHHHHHHHHHHHhcCCeEEEEEcC-CCCHHHHHHHHH
Confidence 56667665433333333332 12345 332 2334566777788888888776544333 456777777776
Q ss_pred hhhhc--CCeEEEEecccc
Q 013729 319 SAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 319 ~~~~~--g~~v~i~~ag~~ 335 (437)
+..++ +++++|-+||..
T Consensus 98 ~~~~~~g~iD~lvnnAG~~ 116 (267)
T 3u5t_A 98 TAEEAFGGVDVLVNNAGIM 116 (267)
T ss_dssp HHHHHHSCEEEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 55433 678888888743
No 315
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=21.38 E-value=2.6e+02 Score=24.66 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhc--CCeEEEEeccc
Q 013729 280 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~--g~~v~i~~ag~ 334 (437)
.+.+...+..+.++..|..+..-.+. -..++.+.+++++..++ +++++|-.||.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 96 (259)
T 3edm_A 41 GAAEGAATAVAEIEKLGRSALAIKAD-LTNAAEVEAAISAAADKFGEIHGLVHVAGG 96 (259)
T ss_dssp SSCHHHHHHHHHHHTTTSCCEEEECC-TTCHHHHHHHHHHHHHHHCSEEEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEcC-CCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 34455666677777777664443332 45567677776554332 57788877764
No 316
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=21.37 E-value=2.6e+02 Score=24.97 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=50.4
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.++++|.+..=-.+-+.+.++ ....| ++. ..++....+++.+.+...|..+..-.+. -.+++.+.+++
T Consensus 30 ~vlVTGas~gIG~aia~~la~---------~G~~V-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~d~~~v~~~~ 97 (269)
T 4dmm_A 30 IALVTGASRGIGRAIALELAA---------AGAKV-AVN-YASSAGAADEVVAAIAAAGGEAFAVKAD-VSQESEVEALF 97 (269)
T ss_dssp EEEETTCSSHHHHHHHHHHHH---------TTCEE-EEE-ESSCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH---------CCCEE-EEE-eCCChHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHH
Confidence 366677665433333333332 22345 333 2335677778888888888776544333 45677777776
Q ss_pred hhhhhc--CCeEEEEecccc
Q 013729 318 SSAHER--GIEIIIAGAGGA 335 (437)
Q Consensus 318 ~~~~~~--g~~v~i~~ag~~ 335 (437)
++..+. +++++|-.||..
T Consensus 98 ~~~~~~~g~id~lv~nAg~~ 117 (269)
T 4dmm_A 98 AAVIERWGRLDVLVNNAGIT 117 (269)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 544332 688888888653
No 317
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=21.33 E-value=2.8e+02 Score=26.83 Aligned_cols=93 Identities=12% Similarity=0.069 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHhhccCCcccccCCCCeEEEEEcc---CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhh
Q 013729 245 SMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGS---DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH 321 (437)
Q Consensus 245 s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs---~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~ 321 (437)
+.+..+++=..+....+ .-+.++||.|+ ...+..++.+.+.|++.|.++..-+.| .=+|++++.|
T Consensus 246 ~~~~~l~rR~~~I~kA~------dA~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg-~inp~KLanF----- 313 (378)
T 3lzd_A 246 DPERFIRKRWAQIAKAM------DAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMN-DVNYHKLEGF----- 313 (378)
T ss_dssp CCHHHHHHHHHHHHHHT------TCCEEEEEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEES-SCCHHHHTTS-----
T ss_pred cHHHHHHHHHHHHHHHh------cCCEEEEEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhCC-----
Confidence 34555544344443322 44678888874 566888889999999999998877776 7788888766
Q ss_pred hcCCeEEEEeccccccccCcccCCCCCCEEec
Q 013729 322 ERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 353 (437)
Q Consensus 322 ~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~ 353 (437)
+++++|..|=-...+-+ ...-.+||+..
T Consensus 314 --~iD~fV~vaCPrlsidd--~~~F~KPvLTP 341 (378)
T 3lzd_A 314 --PFEAYVVVACPRVPLDD--YGAWRKPVLTP 341 (378)
T ss_dssp --CCSEEEECSCTHHHHSC--CSCCSSCEECH
T ss_pred --CCCEEEEecCCCccccc--hhhCCCcccCH
Confidence 27878776621112222 23456788763
No 318
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=21.32 E-value=2e+02 Score=28.74 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=34.1
Q ss_pred EccCCCHHHHHHHHHHHHHcCCcEEEEEe--cCCC-ChhHHHHhHhhhhhcCCeEEE
Q 013729 276 MGSDSDLPVMKDAAKILTMFSVPHEVRIV--SAHR-TPDLMFSYASSAHERGIEIII 329 (437)
Q Consensus 276 ~gs~sD~~~~~~~~~~L~~~G~~~~~~v~--s~hr-~p~~~~~~~~~~~~~g~~v~i 329 (437)
..+.||...+..+.+.+++.|..++..+. ...+ +|+.+.++++.+.+.|++.+.
T Consensus 120 f~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~ 176 (464)
T 2nx9_A 120 FDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIA 176 (464)
T ss_dssp CCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEE
T ss_pred EEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence 44566777777777777777777655552 1222 566667777777777777443
No 319
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2
Probab=21.28 E-value=2.8e+02 Score=23.90 Aligned_cols=54 Identities=7% Similarity=-0.031 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEeccc
Q 013729 280 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
.+.+.++++.+.+...|..+....+. -.+++.+.+++++..+ .+++++|-+||.
T Consensus 41 r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 96 (244)
T 2bd0_A 41 RTAADLEKISLECRAEGALTDTITAD-ISDMADVRRLTTHIVERYGHIDCLVNNAGV 96 (244)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEEEECC-TTSHHHHHHHHHHHHHHTSCCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHccCCeeeEEEec-CCCHHHHHHHHHHHHHhCCCCCEEEEcCCc
Confidence 34566666666666666555443333 4556667766654433 257888888864
No 320
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=21.25 E-value=2.7e+02 Score=24.20 Aligned_cols=53 Identities=11% Similarity=-0.053 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhh--------cCCeEEEEeccc
Q 013729 281 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--------RGIEIIIAGAGG 334 (437)
Q Consensus 281 D~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~--------~g~~v~i~~ag~ 334 (437)
+.+..++..+.+...|..+....+. -..++.+.++.+...+ ..++++|-.||.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~ 101 (255)
T 3icc_A 41 RKEEAEETVYEIQSNGGSAFSIGAN-LESLHGVEALYSSLDNELQNRTGSTKFDILINNAGI 101 (255)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECC-TTSHHHHHHHHHHHHHHHHHHHSSSCEEEEEECCCC
T ss_pred chHHHHHHHHHHHhcCCceEEEecC-cCCHHHHHHHHHHHHHHhcccccCCcccEEEECCCC
Confidence 3456666677777776654433222 3345555555543322 137788877764
No 321
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=21.23 E-value=1.3e+02 Score=27.16 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHcCC-cEEEEEecCCCCh-hHHHHhHhhhhh--cCCeEEEEeccc
Q 013729 280 SDLPVMKDAAKILTMFSV-PHEVRIVSAHRTP-DLMFSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~-~~~~~v~s~hr~p-~~~~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
.+...+.++.+.|...+- .+....+. -..+ +.+.++.+...+ .+++++|-+||.
T Consensus 44 r~~~~~~~~~~~l~~~~~~~~~~~~~D-l~~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 44 RDVTKGHEAVEKLKNSNHENVVFHQLD-VTDPIATMSSLADFIKTHFGKLDILVNNAGV 101 (311)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEECC-TTSCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEEcc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 445666666666665543 23322222 2334 444555443333 257777777764
No 322
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=21.14 E-value=2.3e+02 Score=25.19 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC------------hhHHHHhHhhhhhcCCeEEEEec
Q 013729 269 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT------------PDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 269 ~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~------------p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
.+++++|+|+.+ .....+++.|.+.|.++.+. .|. ++++.+..+..+..|.++.....
T Consensus 12 ~gk~vlVTGas~--gIG~~ia~~l~~~G~~V~~~----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (278)
T 3sx2_A 12 TGKVAFITGAAR--GQGRAHAVRLAADGADIIAV----DLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQA 81 (278)
T ss_dssp TTCEEEEESTTS--HHHHHHHHHHHHTTCEEEEE----ECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCEEEEECCCC--hHHHHHHHHHHHCCCeEEEE----ecccccccccccccchHHHHHHHHHHHhcCCeEEEEeC
No 323
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=21.10 E-value=1.8e+02 Score=27.21 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=37.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeE
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEI 327 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v 327 (437)
++|.|++|.-.+=....-+++.|...|+++.+-..+.....+....-++.++.-|.++
T Consensus 133 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~V~V~~~~~~~~~~~a~~~~~~~~~~g~~~ 190 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQ 190 (306)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCCCSSCCHHHHHHHHHHHTSSCEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCcEEEEEecCCCCCHHHHHHHHHHHHcCCcc
Confidence 4788899988888888889999999999877654442222233333344445555543
No 324
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=21.02 E-value=2.6e+02 Score=24.69 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=51.9
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 317 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~ 317 (437)
.|+++|.+..=-.+-+.+.++ ....|.++ ...+.+..++..+.+...|..+....+. -.+++.+.+++
T Consensus 28 ~vlVTGas~gIG~~la~~l~~---------~G~~v~i~--~~r~~~~~~~~~~~l~~~~~~~~~~~~D-l~~~~~~~~~~ 95 (267)
T 4iiu_A 28 SVLVTGASKGIGRAIARQLAA---------DGFNIGVH--YHRDAAGAQETLNAIVANGGNGRLLSFD-VANREQCREVL 95 (267)
T ss_dssp EEEETTTTSHHHHHHHHHHHH---------TTCEEEEE--ESSCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHH---------CCCEEEEE--eCCchHHHHHHHHHHHhcCCceEEEEec-CCCHHHHHHHH
Confidence 477788776544444444433 22344233 3456677888888888888776555443 45677777776
Q ss_pred hhhhh--cCCeEEEEecccc
Q 013729 318 SSAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 318 ~~~~~--~g~~v~i~~ag~~ 335 (437)
++..+ .+++++|-+||..
T Consensus 96 ~~~~~~~g~id~li~nAg~~ 115 (267)
T 4iiu_A 96 EHEIAQHGAWYGVVSNAGIA 115 (267)
T ss_dssp HHHHHHHCCCSEEEECCCCC
T ss_pred HHHHHHhCCccEEEECCCCC
Confidence 54433 2677888887643
No 325
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=20.97 E-value=2.8e+02 Score=21.16 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEec
Q 013729 280 SDLPVMKDAAKILTMFSVPHEVRIVS 305 (437)
Q Consensus 280 sD~~~~~~~~~~L~~~G~~~~~~v~s 305 (437)
+.-+.+..+.+.|+++|++|+..-+.
T Consensus 29 ~~Cp~C~~ak~~L~~~gi~y~~~di~ 54 (111)
T 3zyw_A 29 PRCGFSKQMVEILHKHNIQFSSFDIF 54 (111)
T ss_dssp BSSHHHHHHHHHHHHTTCCCEEEEGG
T ss_pred CcchhHHHHHHHHHHcCCCeEEEECc
Confidence 56799999999999999998765444
No 326
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=20.91 E-value=2.7e+02 Score=24.92 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=39.6
Q ss_pred CCCeEEEEEcc-----CCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 268 ILPRIGIIMGS-----DSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 268 ~~~~V~ii~gs-----~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+...|+++... .++ ...+..+.+.++++|+.+.. ...+..++.-.++++.+..++++-+|...
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 91 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRM--TVSENSGDLYHEVKTMIQSKSVDGFILLY 91 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEE--CCCSSHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEeC
Confidence 34567777654 233 23445556777888876554 45566666666677777778888666543
No 327
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Probab=20.85 E-value=2.4e+02 Score=25.57 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=39.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhh-hcCCeEEEEec
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH-ERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~-~~g~~v~i~~a 332 (437)
+++++|+|+.+ .....+++.|.+.|.++.+. .+|+++.+.+..++++ ..|.++.....
T Consensus 9 ~k~~lVTGas~--GIG~aia~~la~~G~~V~~~---~~r~~~~~~~~~~~l~~~~~~~~~~~~~ 67 (291)
T 1e7w_A 9 VPVALVTGAAK--RLGRSIAEGLHAEGYAVCLH---YHRSAAEANALSATLNARRPNSAITVQA 67 (291)
T ss_dssp CCEEEETTCSS--HHHHHHHHHHHHTTCEEEEE---ESSCHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred CCEEEEECCCc--hHHHHHHHHHHHCCCeEEEE---cCCCHHHHHHHHHHHhhhcCCeeEEEEe
Confidence 45669999875 66778889999999876554 1388887777766554 44555554433
No 328
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=20.69 E-value=2e+02 Score=26.22 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=32.9
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEe-cCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 270 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIV-SAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 270 ~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~-s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
++|++++...++ ......+.+.++++|+.+. +. ....+++.-.+.++.+..++++.+|+..
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~--~~~~~~~d~~~q~~~i~~li~~~vdgiii~~ 68 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVT--YDGPTEPSVSGQVQLVNNFVNQGYDAIIVSA 68 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEE--ECCCSSCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEE--EECCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 456666543332 1122333445666775543 32 2456666656666666667777766654
No 329
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.61 E-value=3.8e+02 Score=23.41 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=35.2
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+...|+++..+.++ ......+.+.++++|+.+... ..+..++.-.++++.+..++++-+|...
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 71 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLF--DANADIEREKTLLRAIGSRGFDGLILQS 71 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEE--ECTTCHHHHHHHHHHHHTTTCSEEEEES
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEE--eCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 34567676654433 223334445566677655443 4456666666666666666777555543
No 330
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=20.60 E-value=2.8e+02 Score=25.35 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHHhhccCCcccccCCCCeEE-EEE--c-----cCCCHHHHHHHHHHHHHcCCcEEEEEecCC--CChhH
Q 013729 243 GSSMGLVESRLNSLLKEDSSDCQFKILPRIG-IIM--G-----SDSDLPVMKDAAKILTMFSVPHEVRIVSAH--RTPDL 312 (437)
Q Consensus 243 G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~-ii~--g-----s~sD~~~~~~~~~~L~~~G~~~~~~v~s~h--r~p~~ 312 (437)
..+.+|.++++.++.+..+. ....|- .++ . +..|.+.+.+.++.+.+.|.. ...+...| .+|+.
T Consensus 112 ~~~~~e~~~~~~~~v~~a~~-----~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d-~i~l~Dt~G~~~P~~ 185 (295)
T 1ydn_A 112 NCTIAESIERLSPVIGAAIN-----DGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCH-EVSLGDTIGRGTPDT 185 (295)
T ss_dssp SSCHHHHHHHHHHHHHHHHH-----TTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCS-EEEEEETTSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH-----cCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCC-EEEecCCCCCcCHHH
Confidence 46889999888887765442 111221 122 1 467899999999999999988 33333334 47999
Q ss_pred HHHhHhhhhh
Q 013729 313 MFSYASSAHE 322 (437)
Q Consensus 313 ~~~~~~~~~~ 322 (437)
+.++++..++
T Consensus 186 ~~~lv~~l~~ 195 (295)
T 1ydn_A 186 VAAMLDAVLA 195 (295)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9998876654
No 331
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=20.57 E-value=4.2e+02 Score=24.55 Aligned_cols=45 Identities=9% Similarity=0.105 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCC-------CChhHHHHhHhhhhhcCCeE
Q 013729 283 PVMKDAAKILTMFSVPHEVRIVSAH-------RTPDLMFSYASSAHERGIEI 327 (437)
Q Consensus 283 ~~~~~~~~~L~~~G~~~~~~v~s~h-------r~p~~~~~~~~~~~~~g~~v 327 (437)
+.+.++.+..++.|..+...+..+. -+|+.+.++.+.+.+.|++.
T Consensus 122 ~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 173 (307)
T 1ydo_A 122 HILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISE 173 (307)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCE
Confidence 4455556666666666655544322 13556666666666666663
No 332
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=20.50 E-value=1.5e+02 Score=27.11 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=25.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec
Q 013729 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS 305 (437)
Q Consensus 270 ~~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s 305 (437)
.+|.|+.|.-.+=....-+++.|...|+++++-..+
T Consensus 80 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~V~~~~ 115 (265)
T 2o8n_A 80 PTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPK 115 (265)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCS
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 367777777777777777778888888776664333
No 333
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=20.37 E-value=2.1e+02 Score=26.09 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=47.8
Q ss_pred EEEEEcCCHHHHHHHHHHhhccCCcccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCC---cEEEEEecCCCChhHHH
Q 013729 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSV---PHEVRIVSAHRTPDLMF 314 (437)
Q Consensus 238 ~Vi~~G~s~~eA~~k~~~a~~~i~~~~~~~~~~~V~ii~gs~sD~~~~~~~~~~L~~~G~---~~~~~v~s~hr~p~~~~ 314 (437)
.++++|.+.-=-.+-+...++ ....| ++. +.+.+.+++..+.+...|. .+..-.+. -..++.+.
T Consensus 28 ~vlVTGas~gIG~aia~~L~~---------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~~D-v~d~~~v~ 94 (297)
T 1xhl_A 28 SVIITGSSNGIGRSAAVIFAK---------EGAQV-TIT--GRNEDRLEETKQQILKAGVPAEKINAVVAD-VTEASGQD 94 (297)
T ss_dssp EEEETTCSSHHHHHHHHHHHH---------TTCEE-EEE--ESCHHHHHHHHHHHHHTTCCGGGEEEEECC-TTSHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHH---------CCCEE-EEE--eCCHHHHHHHHHHHHhcCCCCceEEEEecC-CCCHHHHH
Confidence 367777765544443433332 22345 333 3456667777777777665 44433222 45677677
Q ss_pred HhHhhhhh--cCCeEEEEecccc
Q 013729 315 SYASSAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 315 ~~~~~~~~--~g~~v~i~~ag~~ 335 (437)
+++++..+ .+++++|-+||..
T Consensus 95 ~~~~~~~~~~g~iD~lvnnAG~~ 117 (297)
T 1xhl_A 95 DIINTTLAKFGKIDILVNNAGAN 117 (297)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 76654332 2688999888743
No 334
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=20.35 E-value=4.7e+02 Score=23.42 Aligned_cols=30 Identities=13% Similarity=0.007 Sum_probs=13.4
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013729 274 IIMGSDSDLPVMKDAAKILTMFSVPHEVRI 303 (437)
Q Consensus 274 ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v 303 (437)
.+...-+|....+.+.+...+...++|.=|
T Consensus 62 ~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV 91 (255)
T 4g81_D 62 GVAFDVTDELAIEAAFSKLDAEGIHVDILI 91 (255)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEeeCCCHHHHHHHHHHHHHHCCCCcEEE
Confidence 333444555555555544433222444444
No 335
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=20.28 E-value=2.1e+02 Score=25.25 Aligned_cols=50 Identities=14% Similarity=0.077 Sum_probs=27.9
Q ss_pred HHHHHHHHHHc-CCcEEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEecccc
Q 013729 285 MKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 335 (437)
Q Consensus 285 ~~~~~~~L~~~-G~~~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~~ 335 (437)
++++.+.+... |..+....+. -..++.+.+++++..+ .+++++|-+||..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~ 94 (260)
T 1x1t_A 42 IEKVRAGLAAQHGVKVLYDGAD-LSKGEAVRGLVDNAVRQMGRIDILVNNAGIQ 94 (260)
T ss_dssp HHHHHHHHHHHHTSCEEEECCC-TTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHhccCCcEEEEECC-CCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 55555555544 6554332222 3456666666654322 2688888888743
No 336
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=20.17 E-value=19 Score=37.64 Aligned_cols=44 Identities=14% Similarity=0.023 Sum_probs=27.6
Q ss_pred cEEEEecCCCCCCcCeEEeCCHHH-HHHHHHHhcCCCCcEEEeeccCC
Q 013729 19 PLMVKSKRLAYDGRGNAVAKSEEE-LSSAITALGGFDRGLYVEKWAPF 65 (437)
Q Consensus 19 PvvvKP~~~g~gg~Gv~~v~~~~e-l~~~~~~~~~~~~~~lvEe~I~g 65 (437)
..|+||..+ +.|.||.++...++ +.+....... +.++.|+|++-
T Consensus 529 ~yV~KPi~g-ReG~nV~i~~~~~~~~~~~~~~y~~--~~~IyQe~~~l 573 (619)
T 2io8_A 529 GYAVKPIAG-RCGSNIDLVSHHEEVLDKTSGKFAE--QKNIYQQLWCL 573 (619)
T ss_dssp CEEEEETTC-CTTTTCEEECTTSCEEEECCCTTTT--SCEEEEECCCC
T ss_pred CEEEccCCC-CCCCCEEEEeCCChhHhhccccccC--CCeEEEEecCC
Confidence 489999765 58999999976222 1111111112 34888999984
No 337
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=20.13 E-value=3.6e+02 Score=24.47 Aligned_cols=63 Identities=8% Similarity=0.127 Sum_probs=39.7
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhhhhcCCeEEEEec
Q 013729 268 ILPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 332 (437)
Q Consensus 268 ~~~~V~ii~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~~~~g~~v~i~~a 332 (437)
+...|+++....++ ...+..+.+.+++.|+.+... ..+..+++..++++.+..++++-+|...
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiI~~~ 127 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILA--NSDNDVEKEEKVLETFLSKQVDGIVYMG 127 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHTTCSEEEECS
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE--ECCCChHHHHHHHHHHHhCCCCEEEEeC
Confidence 34568788754333 233444556677888876544 4466777666777777777888666644
No 338
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=20.12 E-value=3.2e+02 Score=24.53 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=30.6
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChhHHHHhHhhh
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA 320 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~hr~p~~~~~~~~~~ 320 (437)
+.++|.|+. .....++..|.+.|.+ ++++ +|++++..++.+++
T Consensus 120 k~vlViGaG---g~g~a~a~~L~~~G~~--V~v~--~R~~~~~~~la~~~ 162 (271)
T 1nyt_A 120 LRILLIGAG---GASRGVLLPLLSLDCA--VTIT--NRTVSRAEELAKLF 162 (271)
T ss_dssp CEEEEECCS---HHHHHHHHHHHHTTCE--EEEE--CSSHHHHHHHHHHT
T ss_pred CEEEEECCc---HHHHHHHHHHHHcCCE--EEEE--ECCHHHHHHHHHHh
Confidence 334777873 6788889999999954 4443 79998887776544
No 339
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=20.03 E-value=2.7e+02 Score=24.66 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=33.6
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC--------------CCChhHHHHhHhhhhhc--CCeEEEEeccc
Q 013729 271 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA--------------HRTPDLMFSYASSAHER--GIEIIIAGAGG 334 (437)
Q Consensus 271 ~V~ii~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~--------------hr~p~~~~~~~~~~~~~--g~~v~i~~ag~ 334 (437)
++++|+|+.+ .....+++.|.+.|.++.+..-+. -..++.+.+++++..++ +++++|-+||.
T Consensus 29 k~vlVTGas~--gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~ 106 (260)
T 3un1_A 29 KVVVITGASQ--GIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGV 106 (260)
T ss_dssp CEEEESSCSS--HHHHHHHHHHHHTTCEEEEEESSCCCCSSTTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CEEEEeCCCC--HHHHHHHHHHHHCCCEEEEEeCChhhcccCceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 3446666654 445556666666666654432211 23455566655443222 67888887764
No 340
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=20.01 E-value=2.9e+02 Score=24.41 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHH-cCCc-EEEEEecCCCChhHHHHhHhhhhh--cCCeEEEEeccc
Q 013729 280 SDLPVMKDAAKILTM-FSVP-HEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 334 (437)
Q Consensus 280 sD~~~~~~~~~~L~~-~G~~-~~~~v~s~hr~p~~~~~~~~~~~~--~g~~v~i~~ag~ 334 (437)
.+.+.++++.+.+.. .+-. +..-.+. -..++.+.+++++..+ ..++++|-+||.
T Consensus 40 r~~~~~~~~~~~l~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 97 (265)
T 3lf2_A 40 RDGERLRAAESALRQRFPGARLFASVCD-VLDALQVRAFAEACERTLGCASILVNNAGQ 97 (265)
T ss_dssp SCHHHHHHHHHHHHHHSTTCCEEEEECC-TTCHHHHHHHHHHHHHHHCSCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEEeCC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 456667777666665 4433 3332222 4556666666654433 257788877764
Done!