RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013729
(437 letters)
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP
binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A*
3r5h_A*
Length = 389
Score = 348 bits (896), Expect = e-118
Identities = 93/256 (36%), Positives = 138/256 (53%), Gaps = 11/256 (4%)
Query: 1 MEVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVE 60
V + E A + YP ++K+ YDG+G V +SE ++ A +E
Sbjct: 131 RLVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANA--AECILE 188
Query: 61 KWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKA 120
KW PF KE++VIV+R +PV E IH NI H PA + ++S+ A A
Sbjct: 189 KWVPFEKEVSVIVIRSVSGETKVFPVAENIHVNNILHESIVPARITEELSQKAIAYAKVL 248
Query: 121 VSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLG 180
LE G AVE+F T +G+I +NE+APRPHNSGH+T ++C TSQF QH+RA+ LPLG
Sbjct: 249 ADELELVGTLAVEMFATADGEIYINELAPRPHNSGHYTQDACETSQFGQHIRAICNLPLG 308
Query: 181 DPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHIT 240
+ ++ P +M N+LGE ++ + + G +H Y K E + QRKMGH+
Sbjct: 309 ETNLLKP-VVMVNILGE--------HIEGVLRQVNRLTGCYLHLYGKEEAKAQRKMGHVN 359
Query: 241 IVGSSMGLVESRLNSL 256
I+ ++ + + SL
Sbjct: 360 ILNDNIEVALEKAKSL 375
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp
superfamily, ligase,biosynthetic protein; HET: MSE ADP;
2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Length = 377
Score = 348 bits (895), Expect = e-118
Identities = 78/258 (30%), Positives = 127/258 (49%), Gaps = 12/258 (4%)
Query: 1 MEVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVE 60
+ V + +A + GYP +VK++ YDG+G + +E++L + E
Sbjct: 129 ISVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIET--SECVAE 186
Query: 61 KWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKA 120
K+ KE+++ V RG + I +P+ E H+ I PA + A + +K
Sbjct: 187 KYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKTIVPARIDKTAE--AKEQVNKI 244
Query: 121 VSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLG 180
+ S+ G F VE F +N Q+ +NE+APRPHNSGH++IE+C SQF+ H+ AV G L
Sbjct: 245 IQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLP 304
Query: 181 DPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHIT 240
+ A+M NLLG+ L + P +H Y K E + RKMGH+T
Sbjct: 305 NSIELLKPAVMMNLLGK--------DLDLLENEFNEHPEWHLHIYGKSERKDSRKMGHMT 356
Query: 241 IVGSSMGLVESRLNSLLK 258
++ + + E + + +
Sbjct: 357 VLTNDVNQTEQDMYAKFE 374
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; 1.55A {Burkholderia
ambifaria} PDB: 3uvz_A
Length = 419
Score = 346 bits (890), Expect = e-116
Identities = 81/257 (31%), Positives = 120/257 (46%), Gaps = 6/257 (2%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKW 62
L + A P ++K+ RL YDG+G + E A ALGG +EK
Sbjct: 157 AAALAALDDAALDAVLPGILKTARLGYDGKGQVRVSTAREARDAHAALGGVP--CVLEKR 214
Query: 63 APFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWK-ISELATDVAHKAV 121
P E++ ++ RG D +P+ + +H I + PA E A A +
Sbjct: 215 LPLKYEVSALIARGADGRSAAFPLAQNVHHNGILALTIVPAPAADTARVEEAQQAAVRIA 274
Query: 122 SSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGD 181
+L G+ VE F +G + NE+APRPHNSGH+T+++C TSQFEQ +RA+ +PLG+
Sbjct: 275 DTLGYVGVLCVEFFVLEDGSFVANEMAPRPHNSGHYTVDACATSQFEQQVRAMTRMPLGN 334
Query: 182 PSMKTPAAIMYNLLGEAEGERGFYLAHQL--IGKALSIPGATVHWYDKPEMRQQRKMGHI 239
P +P A M N+LG+ G ++P A +H Y K E R RKMGH+
Sbjct: 335 PRQHSP-AAMLNILGDVWFPNGAAAGAVTPPWDTVAAMPAAHLHLYGKEEARVGRKMGHV 393
Query: 240 TIVGSSMGLVESRLNSL 256
+ +
Sbjct: 394 NFTAEMRDDAVAAATAC 410
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis,
ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus
clavatus} PDB: 3k5h_A*
Length = 403
Score = 344 bits (884), Expect = e-116
Identities = 111/259 (42%), Positives = 161/259 (62%), Gaps = 9/259 (3%)
Query: 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEK 61
N + G+Q GYPLM+KSK +AYDGRGN S++++ A+ AL R LY EK
Sbjct: 145 VENTPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALKD--RPLYAEK 202
Query: 62 WAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKA 120
WA F ELAVIVV+ +D+ +L YP VET+ +++IC +V APA V I++ A ++A KA
Sbjct: 203 WAYFKMELAVIVVKTKDE-VLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKA 261
Query: 121 VSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLG 180
V++ +G G+F VE+F + I+L E+A R HNSGH+TIE C SQF+ H+RA++ LP+
Sbjct: 262 VAAFDGKGVFGVEMFLLEDDSIMLCEIASRIHNSGHYTIEGCALSQFDAHLRAILDLPIP 321
Query: 181 DPSMKT-PAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHI 239
S++ +IM N++G A + A ALSIP A++H Y K + RKMGHI
Sbjct: 322 AQSLEIRQPSIMLNIIGGAAPDTHLQAAE----CALSIPNASIHLYSKGAAKPGRKMGHI 377
Query: 240 TIVGSSMGLVESRLNSLLK 258
T+ +M E+ + L+
Sbjct: 378 TVTAPTMHEAETHIQPLID 396
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga
maritima}
Length = 380
Score = 338 bits (869), Expect = e-114
Identities = 112/255 (43%), Positives = 156/255 (61%), Gaps = 14/255 (5%)
Query: 1 MEVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVE 60
V DLES ++FG+P++ K+++ YDGRG + K+E++L +A Y+E
Sbjct: 119 KLVKDLESD---VREFGFPVVQKARKGGYDGRGVFIIKNEKDLENA------IKGETYLE 169
Query: 61 KWAPFVKELAVIVVRGRDKSILCYPVVETIHKE--NICHIVKAPAAVPWKISELATDVAH 118
++ KELAV+V R I CYPVVE E NIC V APA + K S++A ++A
Sbjct: 170 EFVEIEKELAVMVARNEKGEIACYPVVEMYFDEDANICDTVIAPARIEEKYSKIAREIAT 229
Query: 119 KAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLP 178
V +LEG GIF +E+F T G+IL+NE+APRPHNSGH+TIE+C TSQFEQH+RA++ LP
Sbjct: 230 SVVEALEGVGIFGIEMFLTKQGEILVNEIAPRPHNSGHYTIEACVTSQFEQHIRAIMNLP 289
Query: 179 LGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGH 238
LG + P A+M NLLGE L + +AL+I G ++H+Y K E R RKMGH
Sbjct: 290 LGSTELLIP-AVMVNLLGEEGYYGKPALIG--LEEALAIEGLSLHFYGKKETRPYRKMGH 346
Query: 239 ITIVGSSMGLVESRL 253
T+V + +
Sbjct: 347 FTVVDRDVERALEKA 361
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine
nucleotide biosynthetic pathway, structural genomics,
NPPSFA; 2.35A {Aquifex aeolicus}
Length = 365
Score = 332 bits (853), Expect = e-111
Identities = 81/262 (30%), Positives = 135/262 (51%), Gaps = 17/262 (6%)
Query: 5 DLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP 64
+ A K F P+++K+++L YDG+G K E+ + + + +E++
Sbjct: 114 KRDEIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDK-EESFIIEEFVK 172
Query: 65 FVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSL 124
F E++ I VR R+ YP H+E I P A + A ++ + + L
Sbjct: 173 FEAEISCIGVRDREGKTYFYPQPFNKHEEGILIYNYVPYA----KLKEAEEITKRLMELL 228
Query: 125 EGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSM 184
+ G+F VE F +G++L+NE APR HN+GH T++ YTSQFE +RA+ +PLG +
Sbjct: 229 DIVGVFTVEFFLLKDGRVLINEFAPRVHNTGHWTLDGAYTSQFENLLRAITEMPLGSTEL 288
Query: 185 KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGS 244
K P + M N+LG++ E + + LS+ GA ++WY K E + +RK+GH+ +VG
Sbjct: 289 KLP-SGMVNILGKSYEEIP-------LKEILSVEGAKLYWYGK-EKKPRRKVGHVNVVGR 339
Query: 245 SMGLVESRLNSL---LKEDSSD 263
S V ++ + LK
Sbjct: 340 SKEEVVEKVERVFTLLKGSREK 361
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Length = 369
Score = 330 bits (849), Expect = e-111
Identities = 98/257 (38%), Positives = 143/257 (55%), Gaps = 16/257 (6%)
Query: 1 MEVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVE 60
V+ E K+ G P ++K++R YDG+G A+ ++EEE A+ ALGG RGL +E
Sbjct: 115 HPVDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALGG--RGLILE 172
Query: 61 KWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPA-AVPWKISELATDVAHK 119
+ PF +E++++ VRGR + YP+VE H I + APA + + A A +
Sbjct: 173 GFVPFDREVSLLAVRGRTGEVAFYPLVENRHWGGILRLSLAPAPGASEALQKKAEAYALR 232
Query: 120 AVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPL 179
A+ +L+ G+ A+E F +L NE+APR HNSGH TIE TSQFE H+RAV+GLPL
Sbjct: 233 AMEALDYVGVLALEFFQVGEE-LLFNEMAPRVHNSGHWTIEGAETSQFENHLRAVLGLPL 291
Query: 180 GDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHI 239
G + + + M NL+GE + L + GA +HWY K +R RK+GHI
Sbjct: 292 GSTAPRGQ-SAMVNLIGE----------KPPFAEVLKVEGAHLHWYGK-AVRPGRKVGHI 339
Query: 240 TIVGSSMGLVESRLNSL 256
T+ + +E L L
Sbjct: 340 TLRRDGLKALEEGLARL 356
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; 1.77A {Thermotoga maritima}
SCOP: c.23.8.1
Length = 183
Score = 320 bits (823), Expect = e-110
Identities = 111/181 (61%), Positives = 139/181 (76%)
Query: 257 LKEDSSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 316
+ D +PR+GIIMGSDSDLPVMK AA+IL F + +E+ IVSAHRTPD MF Y
Sbjct: 1 MGSDKIHHHHHHVPRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEY 60
Query: 317 ASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGV 376
A +A ERGIE+IIAGAGGAAHLPGMVA+ T LPVIGVPV+ S L+GLDSL SIVQMP GV
Sbjct: 61 AKNAEERGIEVIIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGV 120
Query: 377 PVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYLN 436
PVATVAINNA NAG+LA +LG ++ ++++Y E M+ +VL KA++L++ G++ YLN
Sbjct: 121 PVATVAINNAKNAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLEQIGYKEYLN 180
Query: 437 H 437
Sbjct: 181 Q 181
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta
protein, structural genomics, PSI-2, protein initiative;
1.70A {Mycobacterium tuberculosis}
Length = 174
Score = 313 bits (804), Expect = e-107
Identities = 108/167 (64%), Positives = 125/167 (74%)
Query: 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 329
PR+G+IMGSDSD PVM DAA L F +P EVR+VSAHRTP+ MFSYA A RG+E+II
Sbjct: 8 PRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVII 67
Query: 330 AGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNA 389
AGAGGAAHLPGMVAA TPLPVIGVPV LDGLDSLLSIVQMP GVPVATV+I A NA
Sbjct: 68 AGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNA 127
Query: 390 GLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYLN 436
GLLAVRMLG + LRAR+ + + + D V K +LQ+ + +
Sbjct: 128 GLLAVRMLGAANPQLRARIVAFQDRLADVVAAKDAELQRLAGKLTRD 174
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp,
purine biosynthesis, antimicrobial, ATP-binding,
decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli}
SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A*
1b6s_A*
Length = 355
Score = 314 bits (806), Expect = e-105
Identities = 75/258 (29%), Positives = 116/258 (44%), Gaps = 18/258 (6%)
Query: 1 MEVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVE 60
+ + + G +VK + YDGRG ++ E G VE
Sbjct: 98 QLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGE----CIVE 153
Query: 61 KWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKA 120
+ F E++++ RG D S + YP+ +H++ I A + A ++
Sbjct: 154 QGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQARAEEMLSAI 213
Query: 121 VSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLG 180
+ L G+ A+E F T G +L+NE+APR HNSGH T SQFE H+RA+ LPL
Sbjct: 214 MQELGYVGVMAMECFVTPQG-LLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLP 272
Query: 181 DPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHIT 240
P + P+ M NL+G L +P +HWYDK E+R RK+GH+
Sbjct: 273 QPVVNNPSV-MINLIGSDVNY-----------DWLKLPLVHLHWYDK-EVRPGRKVGHLN 319
Query: 241 IVGSSMGLVESRLNSLLK 258
+ S + + L +L+
Sbjct: 320 LTDSDTSRLTATLEALIP 337
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine
biosynthesis, spine, lyase; 1.80A {Bacillus anthracis}
SCOP: c.23.8.1
Length = 170
Score = 286 bits (734), Expect = 1e-96
Identities = 94/168 (55%), Positives = 119/168 (70%), Gaps = 2/168 (1%)
Query: 261 SSDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA 320
S + +G+IMGS SD MK A IL ++P+E ++VSAHRTPD MF YA +A
Sbjct: 3 SHHHHHHMKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETA 62
Query: 321 HERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVAT 380
ERG+++IIAGAGGAAHLPGMVAA+T LPVIGVPV++ AL+GLDSLLSIVQMP GVPVAT
Sbjct: 63 RERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVAT 122
Query: 381 VAINN--ATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKL 426
VAI +TNAGLLA ++LG D+ ++ E + DV +E +
Sbjct: 123 VAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSELV 170
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A
{Bacillus anthracis}
Length = 181
Score = 285 bits (732), Expect = 3e-96
Identities = 93/159 (58%), Positives = 117/159 (73%), Gaps = 2/159 (1%)
Query: 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 329
+G+IMGS SD MK A IL ++P+E ++VSAHRTPD MF YA +A ERG+++II
Sbjct: 23 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 82
Query: 330 AGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN--AT 387
AGAGGAAHLPGMVAA+T LPVIGVPV++ AL+GLDSLLSIVQMP GVPVATVAI +T
Sbjct: 83 AGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGST 142
Query: 388 NAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKL 426
NAGLLA ++LG D+ ++ E + DV +E +
Sbjct: 143 NAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSELV 181
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase,
isomerase,biosynthetic protein; 1.45A {Staphylococcus
aureus subsp}
Length = 163
Score = 284 bits (729), Expect = 4e-96
Identities = 85/160 (53%), Positives = 110/160 (68%), Gaps = 2/160 (1%)
Query: 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 329
++ +IMGS SD +M+++ +L F +P+E ++VSAHRTP +M +AS A ERGI III
Sbjct: 4 MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIII 63
Query: 330 AGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NAT 387
AGAGGAAHLPGMVA+ T LPVIGVP+ +L G+DSLLSIVQMP G+PVAT AI A
Sbjct: 64 AGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAK 123
Query: 388 NAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQ 427
NAG+LA RML + L ++ QY + V +LQ
Sbjct: 124 NAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ 163
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase
subunit; purines, pyrimidines, nucleosides, nucleotides,
lyase; 2.20A {Coxiella burnetii}
Length = 169
Score = 283 bits (727), Expect = 1e-95
Identities = 70/161 (43%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Query: 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 329
+ I+MGSDSDL M+ A L +P E I+SAHRTP + +A RG + I
Sbjct: 7 IFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFI 66
Query: 330 AGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN--AT 387
A AG AAHL G +AA T PVIGVP+ +L GLD+LLS VQMP GVPVA AI A
Sbjct: 67 AAAGLAAHLAGTIAAHTLKPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGKAGAK 126
Query: 388 NAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 428
NA +LA +++ D + ++ Q R+ + E LQ
Sbjct: 127 NAAILAAQIIALQDKSIAQKLVQQRTAKRETLKKADENLQT 167
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine
biosynthesis, lyase; 1.74A {Treponema denticola} PDB:
3rgg_A*
Length = 159
Score = 278 bits (714), Expect = 8e-94
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Query: 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER-GIEII 328
P + I+MGS SD+ + A L F + + +RI SAH+T + + S ++
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLY 62
Query: 329 IAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATN 388
I AG + L G V I P + + G D + S ++MP G+ A V N
Sbjct: 63 ITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGAD-IYSSLRMPSGISPALVL--EPKN 119
Query: 389 AGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 428
A LLA R+ D ++ ++ YME ++ KL++
Sbjct: 120 AALLAARIFSLYDKEIADSVKSYMESNAQKIIEDDSKLKR 159
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold,
structural genomics, NPPSFA; 2.31A {Methanocaldococcus
jannaschii}
Length = 157
Score = 277 bits (712), Expect = 1e-93
Identities = 74/157 (47%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 272 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 331
I IIMGS+SDL + + A IL F V EVR+ SAHRTP+L+ ++ + IA
Sbjct: 2 ICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKAD---VFIAI 58
Query: 332 AGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGL 391
AG AAHLPG+VA+ T PVI VPV + LDGLD+LLS VQMP G+PVATV I+ NA +
Sbjct: 59 AGLAAHLPGVVASLTTKPVIAVPVD-AKLDGLDALLSSVQMPPGIPVATVGIDRGENAAI 117
Query: 392 LAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 428
LA+ +L D ++ ++ +Y E M+ V EK+++
Sbjct: 118 LALEILALKDENIAKKLIEYREKMKKKVYASDEKVKE 154
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: MSE; 1.75A {Francisella tularensis
subsp} PDB: 3opq_A*
Length = 166
Score = 276 bits (709), Expect = 5e-93
Identities = 82/160 (51%), Positives = 108/160 (67%), Gaps = 2/160 (1%)
Query: 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 329
++G+IMGS SD MK+ IL + +E +VSAHRTPD MF YA +A ERG+++II
Sbjct: 6 VQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVII 65
Query: 330 AGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NAT 387
AGAGGAAHLPGMVAA+T LPV+GVPV++S L+G DSLLSIVQMP G+PVAT AI A
Sbjct: 66 AGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAK 125
Query: 388 NAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQ 427
NA L A +L D ++ + ++ + VL + +
Sbjct: 126 NAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPRE 165
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer
(ABA) sandwich, rossmann fold, csgid, lyase, structu
genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A
2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Length = 174
Score = 275 bits (706), Expect = 2e-92
Identities = 83/161 (51%), Positives = 112/161 (69%), Gaps = 2/161 (1%)
Query: 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 329
+I I+MGS SD M+ AA +LT +VP V +VSAHRTPD +FS+A A G+ +II
Sbjct: 13 VKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVII 72
Query: 330 AGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN--AT 387
AG GGAAHLPGM+AA+T +PV+GVPV+++AL G+DSL SIVQMPRG+PV T+AI A
Sbjct: 73 AGNGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAA 132
Query: 388 NAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 428
NA LLA ++L D +L R+ + + DDVL + ++
Sbjct: 133 NAALLAAQILALHDTELAGRLAHWRQSQTDDVLDNPDPREE 173
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 284 bits (730), Expect = 2e-92
Identities = 70/298 (23%), Positives = 120/298 (40%), Gaps = 28/298 (9%)
Query: 1 MEVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRG---- 56
M L+ A ++ GYP K+ ++ G+G+ K E++ A RG
Sbjct: 140 MYATTLDELYEACEKIGYPCHTKA-IMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEK 198
Query: 57 LYVEKWAPFVKELAVIVVRGRDKSILCY----PVVETIHKENICHIVKAPAAVPWKISEL 112
+ VE+ F E+ + VR D++ V + H PA + K
Sbjct: 199 IIVEEHIDFDVEVTELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASWQPAEISEKAERE 258
Query: 113 ATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYT--SQFEQH 170
+A + L G GIF VE+F ++ NEV+PRPH++G T+ S S+F H
Sbjct: 259 VYRIAKRITDVLGGLGIFGVEMFVK-GDKVWANEVSPRPHDTGMVTLASHPPGFSEFALH 317
Query: 171 MRAVVGLPLGDPSMKTPA-------AIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVH 223
+RAV+GLP+ + A + + + G + + KALS+P ATV
Sbjct: 318 LRAVLGLPIPGEWVDGYRLFPMLIPAATHVIKAKVSGYSPRFRG---LVKALSVPNATVR 374
Query: 224 WYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSD 281
+ KPE R++G + + + + + ++ R + +
Sbjct: 375 LFGKPEAYVGRRLGIALAWDKDVEVAKRKAEMVAH------MIELRTRSSDWHDQNYE 426
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 279 bits (716), Expect = 7e-91
Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 12/248 (4%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRG----LY 58
+ R A GYP +VK + G+G +S E+L+ A R +
Sbjct: 134 ADSESLFREAVADIGYPCIVKPVM-SSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVI 192
Query: 59 VEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAH 118
VE F E+ ++ V D C PV ++ P + E A ++A
Sbjct: 193 VEGVVKFDFEITLLTVSAVDGVHFCAPVGH-RQEDGDYRESWQPQQMSPLALERAQEIAR 251
Query: 119 KAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLP 178
K V +L G G+F VELF + ++ +EV+PRPH++G T+ S S+F H+RA +GLP
Sbjct: 252 KVVLALGGYGLFGVELFVCGDE-VIFSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLP 310
Query: 179 LGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGH 238
+G PAA +L + + + + A+ + + KPE+ R++G
Sbjct: 311 VGGIRQYGPAA-SAVILPQLTSQNVTF---DNVQNAVG-ADLQIRLFGKPEIDGSRRLGV 365
Query: 239 ITIVGSSM 246
S+
Sbjct: 366 ALATAESV 373
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle,
protein stability, lyase; HET: CIT; 1.55A {Acetobacter
aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A
2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Length = 182
Score = 269 bits (691), Expect = 4e-90
Identities = 86/155 (55%), Positives = 104/155 (67%), Gaps = 2/155 (1%)
Query: 270 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 329
P +GIIMGS SD M+ A +LT +PHE IVSAHRTPD + YA +A ERG+ +II
Sbjct: 22 PVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVII 81
Query: 330 AGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAI--NNAT 387
AGAGGAAHLPGM AA T LPV+GVPV + AL G+DSLLSIVQMP GVPV T+AI + A
Sbjct: 82 AGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAK 141
Query: 388 NAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTK 422
NA LLA +L + L AR++ + V
Sbjct: 142 NAALLAASILALYNPALAARLETWRALQTASVPNS 176
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase;
2.80A {Homo sapiens}
Length = 425
Score = 200 bits (511), Expect = 5e-60
Identities = 40/205 (19%), Positives = 91/205 (44%), Gaps = 5/205 (2%)
Query: 226 DKPEMR-QQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGIIMGSDSDLPV 284
D+ + + +Q + + +V+ + + + + R+ ++MGS SDL
Sbjct: 221 DRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLMGSTSDLGH 280
Query: 285 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGI-EIIIAGAGGAAHLPGMVA 343
+ K F +P E+R+ SAH+ PD + GI + +A AG + L +++
Sbjct: 281 CEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMS 340
Query: 344 ARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDAD 403
T PVI P + G+ + S +++P G+ +TV + A ++ G +
Sbjct: 341 GNTAYPVISCPPL-TPDWGVQDVWSSLRLPSGLGCSTVLS--PEGSAQFAAQIFGLSNHL 397
Query: 404 LRARMQQYMEDMRDDVLTKAEKLQK 428
+ ++++ + + + +K+++
Sbjct: 398 VWSKLRASILNTWISLKQADKKIRE 422
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 56.9 bits (137), Expect = 6e-09
Identities = 34/210 (16%), Positives = 62/210 (29%), Gaps = 35/210 (16%)
Query: 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEK 61
V LE R A ++ G PL++K LA G + E + + + + V K
Sbjct: 159 RVTTLEDFRAALEEIGTPLILKPTYLA-SSIGVTLITDTETAEDEFNRVNDYLKSINVPK 217
Query: 62 WAPFVKELAVIV---VRGRDKSILCYPV------VETIHKENICHIV------------- 99
F I ++G +E I + +
Sbjct: 218 AVTFEAP--FIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDKTPQIGFTE 275
Query: 100 ---KAPAAVPWKISELATDVAHKAVSSLE-GAGIFAVELFWTNNGQILLNEVAPRPHNSG 155
P+ + + + + A KA L E+ N + L E A R +G
Sbjct: 276 TSHITPSILDEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMKNREPGLIESAARF--AG 333
Query: 156 HHT---IESCY-TSQFEQHMRAVVGLPLGD 181
+ I+ + + + + D
Sbjct: 334 WNMIPNIKKVFGLDMAQLLLDVLCFGKDAD 363
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 51.8 bits (125), Expect = 1e-07
Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 28/157 (17%)
Query: 7 ESARRAGKQFGYPLMVKSKRLAYDGRGNAV----AKSEEELSSAITALGGFDRGLYVEKW 62
A + G PL VK G++V K+ + L +A++ D+ + VEK
Sbjct: 136 ARATDIVAKLGLPLFVKPASE-----GSSVAVLKVKTADALPAALSEAATHDKIVIVEKS 190
Query: 63 APFVKELAVIVVRGRDKSILCYPVVETIHKENI------------CHIVKAPAAVPWKIS 110
E + D P+++ + +++ P +P +
Sbjct: 191 IEGGGEYTACIAGDLD-----LPLIKIVPAGEFYDYHAKYVANDTQYLI--PCGLPAEQE 243
Query: 111 ELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEV 147
+A +A L + G EV
Sbjct: 244 TELKRIARRAFDVLGCTDWGRADFMLDAAGNAYFLEV 280
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell
WALL, antibiotic resistance, membrane, peptidog
synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium}
SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Length = 343
Score = 51.8 bits (125), Expect = 2e-07
Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 29/161 (18%)
Query: 7 ESARRAGKQFGYPLMVKSKRLAYDG--RGNAVAKSEEELSSAITALGGFDRGLYVEKWAP 64
+ R F YP+ VK R G G S +EL AI + +D + +E+
Sbjct: 155 KDDRPVAATFTYPVFVKPARS---GSSFGVKKVNSADELDYAIESARQYDSKILIEQ--- 208
Query: 65 FVK----ELAVIVVRGRDKSILCYPVVETIHKENICHI--------------VKAPAAVP 106
V AV+ G +++ V + + I I + PA +
Sbjct: 209 AVSGCEVGCAVL---GNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLS 265
Query: 107 WKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEV 147
+ + K +L G+ V++F +NG+I+LNEV
Sbjct: 266 AEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEV 306
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 51.2 bits (123), Expect = 3e-07
Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 26/163 (15%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRG--LYVE 60
V + + A + P++VK+ L +G +AK EEE + VE
Sbjct: 130 VRNENELKNALENLKLPVIVKATDLQ-GSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVE 188
Query: 61 KWAPFV--KELAV--IVVRGRDKSILCYPVVETIHKEN-------ICHIVKAPAAVPWKI 109
+ F+ E V + V+ + + H V P V I
Sbjct: 189 E---FIEGYEFGAQAFVYKND-----VLFVMPHGDETYMSHTAVPVGHYV--PLDVKDDI 238
Query: 110 SELATDVAHKAVSSLE-GAGIFAVELFWTNNGQILLNEVAPRP 151
E KA+ +L V++ +N + + E+ R
Sbjct: 239 IEKTKTEVKKAIKALGLNNCAVNVDMILKDNE-VYIIELTGRV 280
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase;
HET: ATP; 3.07A {}
Length = 346
Score = 49.9 bits (120), Expect = 7e-07
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 33/156 (21%)
Query: 14 KQFGYPLMVKSKRLAYDG--RGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVK---- 67
Q YP+ VK R G G + EE+L A+ A +D + +E+ V
Sbjct: 162 DQLTYPVFVKPARS---GSSFGVSKVAREEDLQGAVEAAREYDSKVLIEE---AVIGTEI 215
Query: 68 ELAVIVVRGRDKSILCYPVVETI----------------HKENICHIVKAPAAVPWKISE 111
AV+ G ++ V + +N V PA +
Sbjct: 216 GCAVM---GNGPELITGEVDQITLSHGFFKIHQESTPESGSDNSAVTV--PADISTTSRS 270
Query: 112 LATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEV 147
L D A +L G+ V+LF T +G+++LNEV
Sbjct: 271 LVQDTAKAVYRALGCRGLSRVDLFLTEDGKVVLNEV 306
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Length = 367
Score = 50.0 bits (120), Expect = 8e-07
Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 18/146 (12%)
Query: 14 KQFGYPLMVKSKRLAYDG--RGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAV 71
F +P +VK G G V K E+EL A+ + + + + +E + VKE +
Sbjct: 182 MNFNFPFIVKPSNA---GSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQGVKEYNL 238
Query: 72 IVVRGRDKSILCYPVVETIHK----------ENICHIVKAPAAVPWKISELATDVAHKAV 121
+ + +E +K + A++ + E + K
Sbjct: 239 AGCKIKKDFCF--SYIEEPNKQEFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLY 296
Query: 122 SSLEGAGIFAVELFWTNNGQILLNEV 147
S L I + F N ++ LNE+
Sbjct: 297 SDLFDGAIIRCDFFVIEN-EVYLNEI 321
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for
ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides}
SCOP: c.30.1.2 d.142.1.1
Length = 377
Score = 49.6 bits (119), Expect = 1e-06
Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 21/158 (13%)
Query: 7 ESARRAGKQFGYPLMVKSKRLAYDG--RGNAVAKSEEELSSAITALGGFDRGLYVEKWAP 64
S + + G + VK+ G G + + EE + A++ +D + +E+
Sbjct: 164 WSWDKIVAELGNIVFVKAANQ---GSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN 220
Query: 65 FVKELAVIVVRGRDKSILCYPVVETIHKENICH---------------IVKAPAAVPWKI 109
+EL V V+ G D+ ++ T+ + + PA + ++
Sbjct: 221 GARELEVGVI-GNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEV 279
Query: 110 SELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEV 147
++ +A A L G ++ N L E
Sbjct: 280 TKEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEP 317
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 1e-06
Identities = 72/462 (15%), Positives = 130/462 (28%), Gaps = 177/462 (38%)
Query: 6 LESARRAGK-----QFG------------------YPLMVK------SKRLAYDGRGNAV 36
+ G FG Y ++V ++ L
Sbjct: 146 FRAVG-EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL--------- 195
Query: 37 AKSEEELSSAITALGGFDRGLYVEKW------APFVKELAVIVVRGRDKSILCY-PV--- 86
E + + + A F +GL + +W P DK L P+
Sbjct: 196 ---SELIRTTLDAEKVFTQGLNILEWLENPSNTP-------------DKDYLLSIPISCP 239
Query: 87 ----VETIHKENICHIV-KAPAAVPWKISELATD----VAHKAVS------SLEGAGIFA 131
++ H ++ P + + V A++ S + A
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 132 VE-LFWTNNG---QILLNEVAPRPHNSGHHTIESCYTSQFEQH-------MRAVVGLPLG 180
+ LF+ G E P + ++ ++ M ++ L
Sbjct: 300 ITVLFFI--GVRCY----EAYP------NTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 181 D------------PSMKTPAAIMYNLLGEAEGERGFYLA---HQLIGKALSIPGATVHWY 225
P+ K + N G + ++ L G L++ A
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVN------GAKNLVVSGPPQSLYGLNLTLRKAKA--- 398
Query: 226 DKPEMRQ------QRKMGHITIVGSSMGL-VESRLNSLLKEDSSDCQFKILPRIGI-IMG 277
+ Q +RK + S+ L V S +S L +SD K L + +
Sbjct: 399 -PSGLDQSRIPFSERK-----LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 278 SDSDLPVMKDAAKILTMFSVP--HEVRIVSAHRTP---DLMFSY---------ASSAHER 323
D +PV + ++R++S + D + + H
Sbjct: 453 KDIQIPV----------YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH-- 500
Query: 324 GIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR---ASALDG 362
I+ G GGA+ L G++ R G VR A LD
Sbjct: 501 ---ILDFGPGGASGL-GVLTHRN---KDGTGVRVIVAGTLDI 535
Score = 36.2 bits (83), Expect = 0.026
Identities = 46/305 (15%), Positives = 103/305 (33%), Gaps = 77/305 (25%)
Query: 197 EAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQ----------------------- 233
+A R L+H + L +P T ++ ++++Q
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVP--TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 234 ---RKMGHIT--IVGSSMGLVESRLNSLLKEDSSDCQFKILPRIGI-----IMGSDSDLP 283
+ +G+++ + S +G + LN L E + L I + ++D
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC----YLEGNDIHALAAKLLQENDTT 115
Query: 284 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA---GAGGA----- 335
++K I + + ++ +F + + ++A G G
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ----LVAIFGGQGNTDDYFE 171
Query: 336 --AHL----PGMV------AARTPLPVIGVPVRASAL--DGLDSLLSIVQMPRGVP---- 377
L +V +A T +I + A + GL+ +L ++ P P
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDY 230
Query: 378 VATVAI----NNATNAG--LLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGW 431
+ ++ I ++ ++LGF +LR+ ++ ++T + D W
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG-ATGHSQGLVTAVAIAETDSW 289
Query: 432 ESYLN 436
ES+
Sbjct: 290 ESFFV 294
Score = 30.8 bits (69), Expect = 1.1
Identities = 21/115 (18%), Positives = 31/115 (26%), Gaps = 44/115 (38%)
Query: 336 AHLPGM--------VAARTPLPVIGVPVRASALDGLD---------SLLSIVQMPRGVPV 378
+ GM AA+ + D S+L IV
Sbjct: 1626 SQEQGMGMDLYKTSKAAQ------------DVWNRADNHFKDTYGFSILDIVI------- 1666
Query: 379 ATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWES 433
NN N L + G +R + + D K EK+ K+ E
Sbjct: 1667 -----NNPVN---LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 48.7 bits (117), Expect = 2e-06
Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 25/161 (15%)
Query: 1 MEVNDLESARRAGKQFGYPLMVKSKRLAYDG--RGNAVAKSEEELSSAITALGGFDRGLY 58
E + G P++VK + +G G + +E L A+ D +
Sbjct: 122 FEKGLSDKQLAEISALGLPVIVKP---SREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178
Query: 59 VEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENI------------CHIVKAPAAVP 106
+EKW E V ++ P + + PA +
Sbjct: 179 IEKWLS-GPEFTVAILGEE-----ILPSIRIQPSGTFYDYEAKFLSDETQYFC--PAGLE 230
Query: 107 WKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEV 147
+ KA ++L G +++ ++GQ L E
Sbjct: 231 ASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEA 271
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB:
2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Length = 322
Score = 47.6 bits (114), Expect = 3e-06
Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 22/156 (14%)
Query: 6 LESARRAGKQFGYPLMVKSKRLAYDG--RGNAVAKSEEELSSAITALGGFDRGLYVEKWA 63
+ F P VK G G + + ++L +A+ +D VEK
Sbjct: 139 VRKGEPPVVPFDPPFFVKPANT---GSSVGISRVERFQDLEAALALAFRYDEKAVVEKAL 195
Query: 64 PFVKELAVIVVRGRDKSILCYPVVETIHK------------ENICHIVKAPAAVPWKISE 111
V+EL V V+ PV E ++ ++ PA + E
Sbjct: 196 SPVRELEVGVLGNVFGEAS--PVGEVRYEAPFYDYETKYTPGRAELLI--PAPLDPGTQE 251
Query: 112 LATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEV 147
++A KA L G+ V+ F G++ LNE+
Sbjct: 252 TVQELALKAYKVLGVRGMARVDFFLA-EGELYLNEL 286
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus
subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Length = 364
Score = 46.8 bits (112), Expect = 7e-06
Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 38/169 (22%)
Query: 1 MEVNDLESARRAGKQFGYPLMVKSKRLAYDG--RGNAVAKSEEELSSAITALGGFDRGLY 58
E + + + YP+ VK L G G + +E EL I FDR L
Sbjct: 155 YEKYEHNILKLVNDKLNYPVFVKPANL---GSSVGISKCNNEAELKEGIKEAFQFDRKLV 211
Query: 59 VEKWAPFVKELAVIVVRGR--------DKSILCYPVVETIHK------------ENICHI 98
+E+ V R + E + +
Sbjct: 212 IEQG-----------VNAREIEVAVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQ 260
Query: 99 VKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEV 147
+ PA + + ++A +A + + +G+ + F T + QI +NE
Sbjct: 261 I--PADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTEDNQIYINET 307
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella
burnetii}
Length = 372
Score = 46.5 bits (111), Expect = 1e-05
Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 29/164 (17%)
Query: 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDG--RGNAVAKSEEELSSAITALGGFDRGLYV 59
+ + R + L VK+ L G K+E E + A+ + +D L V
Sbjct: 165 DATEGVYQRLLDRWGTSELFVKAVSL---GSSVATLPVKTETEFTKAVKEVFRYDDRLMV 221
Query: 60 EKWAPFVK----ELAVIVVRGRDKSILCYPVVETIHK------------ENICHIVKAPA 103
E ++ E AV+ + + E I N
Sbjct: 222 EP---RIRGREIECAVL----GNGAPKASLPGEIIPHHDYYSYDAKYLDPNGATTT-TSV 273
Query: 104 AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEV 147
+ +++ +A A + +G+ V+ F T N ++L+NE+
Sbjct: 274 DLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTPNNKVLVNEI 317
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase,
ATP-binding, cell shape, cell W biogenesis/degradation,
magnesium, manganese; 2.23A {Streptococcus mutans}
Length = 383
Score = 45.7 bits (109), Expect = 2e-05
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 22/155 (14%)
Query: 7 ESARRAGKQFGYPLMVKSKRLAYDG--RGNAVAKSEEELSSAITALGGFDRGLYVEKWAP 64
++ YP+ VK + G G + A++ +L AI +D + +E+
Sbjct: 191 SKLAEVEEKLIYPVFVKPANM---GSSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD 247
Query: 65 FVKELAVIVVRGRDKSILCYPVVETIHK------------ENICHIVKAPAAVPWKISEL 112
+E+ V ++ D + E + I + PA + I E
Sbjct: 248 -AREIEVGILGNTD--VKTTLPGEIVKDVAFYDYEAKYIDNKITMAI--PAEIDPVIVEK 302
Query: 113 ATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEV 147
D A A +L G+ + F T +G++ LNE+
Sbjct: 303 MRDYAATAFRTLGCCGLSRCDFFLTEDGKVYLNEL 337
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP
binding protein, csgid, A binding, cell shape; HET: ADP;
2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Length = 364
Score = 45.7 bits (109), Expect = 2e-05
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 29/159 (18%)
Query: 7 ESARRAGKQFGYPLMVKSKRLAYDG--RGNAVAKSEEELSSAITALGGFDRGLYVEKWAP 64
S + G PL VK G G + +E + A+ FD + VE+
Sbjct: 169 FSFAEVESRLGLPLFVKPANQ---GSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQ--- 222
Query: 65 FVK----ELAVIVVRGRDKSILCYPVVETI------------HKENICHIVKAPAAVPWK 108
+K E AV+ + + E + +N +V PA +P +
Sbjct: 223 GIKGREIECAVL----GNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVV-VPAQIPSE 277
Query: 109 ISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEV 147
+++ +A +A +L AG+ V++F T + ++++NE+
Sbjct: 278 VNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEI 316
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas
oryzae PV} PDB: 3r5f_A* 3rfc_A*
Length = 386
Score = 44.9 bits (107), Expect = 3e-05
Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 37/163 (22%)
Query: 7 ESARRAGKQFGYPLMVKSKRLAYDG--RGNAVAKSEEELSSAITALGGFDRGLYVEKWAP 64
Q G PL VK G G + ++ + ++A+ +D + VE
Sbjct: 188 ADVDTLIAQLGLPLFVKPANQ---GSSVGVSQVRTADAFAAALALALAYDHKVLVEAA-- 242
Query: 65 FVKELAVIVVRGR--------DKSILCYPVVETI------------HKENICHIVKAPAA 104
V GR + E + E+ IV PA
Sbjct: 243 ---------VAGREIECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIV-IPAD 292
Query: 105 VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEV 147
+ + + +A +A +L AG+ V++F +G+I++NEV
Sbjct: 293 IDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEV 335
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 43.7 bits (103), Expect = 6e-05
Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 11/160 (6%)
Query: 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEK 61
A + P+ VK + + ++ EE+ + + L V++
Sbjct: 134 ATMASFEEALAAGEVQLPVFVKPRNGSA-SIEVRRVETVEEVEQLFSK----NTDLIVQE 188
Query: 62 WAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAV 121
+EL V + ++ K+ + + + EL +
Sbjct: 189 LLVG-QELGVDAYVDLISGKVTSIFIKEKLTMRAGETDKSRSVLRDDVFELVE----HVL 243
Query: 122 SSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161
G +LF L E+ PR H E
Sbjct: 244 DGSGLVGPLDFDLFDVAGTLYLS-EINPRFGGGYPHAYEC 282
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 44.2 bits (105), Expect = 7e-05
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAY--DGRGNAVAKSEEELSSAIT-----ALGGF-D 54
+ E A+ ++ G+PLM+K+ G+G + + E EL A A F +
Sbjct: 141 IKSYELAKEFAEEAGFPLMIKA---TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGN 197
Query: 55 RGLYVEK 61
+Y+E+
Sbjct: 198 SEVYIER 204
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A
{Geobacillus thermodenitrificans}
Length = 461
Score = 43.6 bits (104), Expect = 8e-05
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAY--DGRGNAVAKSEEELSSAIT-----ALGGF-D 54
V+ LE + GYP+++K+ A GRG + +S+ E+ A A F
Sbjct: 143 VDGLEDVVAFAEAHGYPIIIKA---ALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGS 199
Query: 55 RGLYVEK 61
+YVEK
Sbjct: 200 DEVYVEK 206
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 44.2 bits (105), Expect = 8e-05
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAY--DGRGNAVAKSEEELSSAIT-----ALGGF-D 54
+D+ + GYP+M+K+ ++ GRG V +SE +L+ +T A+ F
Sbjct: 157 PDDMAEVAKMAAAIGYPVMLKA---SWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGK 213
Query: 55 RGLYVEK 61
+Y+EK
Sbjct: 214 DEVYLEK 220
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A
{Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Length = 451
Score = 42.8 bits (102), Expect = 2e-04
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYD---GRGNAVAKSEEELSSAIT-----ALGGF- 53
+ LE A+ ++ GYP+++K A GRG + ++EEEL A F
Sbjct: 137 LKSLEEAKALAREIGYPVLLK----ATAGGGGRGIRICRNEEELVKNYEQASREAEKAFG 192
Query: 54 DRGLYVEK 61
L +EK
Sbjct: 193 RGDLLLEK 200
>3ouz_A Biotin carboxylase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta fold,
cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter
jejuni subsp} PDB: 3ouu_A*
Length = 446
Score = 42.5 bits (101), Expect = 2e-04
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYD---GRGNAVAKSEEELSSAIT-----ALGGF- 53
+ E+A++ K+ GYP+++K A GRG V ++E++L A A+ F
Sbjct: 142 LAGAEAAKKLAKEIGYPVILK----AAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFG 197
Query: 54 DRGLYVEK 61
D +Y+EK
Sbjct: 198 DGTMYMEK 205
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin
carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus
aureus}
Length = 451
Score = 42.5 bits (101), Expect = 2e-04
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYD---GRGNAVAKSEEELSSAIT-----ALGGF- 53
+ D+ A++ K+ GYP+++K A G+G VA+ E+EL + A F
Sbjct: 137 MKDVSEAKKIAKKIGYPVIIK----ATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFG 192
Query: 54 DRGLYVEK 61
+ GLY+EK
Sbjct: 193 NGGLYMEK 200
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 108
Score = 39.4 bits (93), Expect = 2e-04
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query: 2 EVNDLESARRAGKQFGYPLMVKSKRLAYD---GRGNAVAKSEEELSSAIT-----ALGGF 53
V D E A R ++ GYP+M+K A G+G +A +EE A F
Sbjct: 30 VVKDAEEAVRIAREIGYPVMIK----ASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSF 85
Query: 54 -DRGLYVEK 61
D L +EK
Sbjct: 86 GDDRLLIEK 94
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET:
AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8
d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Length = 334
Score = 42.0 bits (98), Expect = 3e-04
Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 30/166 (18%)
Query: 14 KQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEK------------ 61
P++VK A G+G +AK E+ G R ++
Sbjct: 123 DDIEKPVIVKPHG-AKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPV 181
Query: 62 -----WAPFVKELAVIVVRGRDKS----ILCYPVVE--TIHKE-NICHIVKAPAAVPWKI 109
++ +EL ++ + R +S I P + + I P + +
Sbjct: 182 YPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESL 241
Query: 110 SELATDVAHKAVSSLEGA-----GIFAVELFWTNNGQILLNEVAPR 150
+ + V + E G F +E +T + + ++ E++ R
Sbjct: 242 LMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISAR 287
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis,
nucleotide-BIN lipid synthesis, ATP-grAsp domain,
fragment screening; HET: L22; 1.77A {Escherichia coli}
PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A*
2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A*
2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A*
...
Length = 449
Score = 41.7 bits (99), Expect = 3e-04
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 13/67 (19%)
Query: 4 NDLESARRAGKQFGYPLMVKSKRLAYD---GRGNAVAKSEEELSSAIT-----ALGGF-D 54
+D++ R K+ GYP+++K A GRG V + + EL+ +I+ A F +
Sbjct: 140 DDMDKNRAIAKRIGYPVIIK----ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSN 195
Query: 55 RGLYVEK 61
+Y+EK
Sbjct: 196 DMVYMEK 202
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase
RV2981C, structural genomics, TB structural GENO
consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Length = 373
Score = 40.7 bits (96), Expect = 6e-04
Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 23/162 (14%)
Query: 4 NDLESARRAGKQFGYPLMVKSKRLAYDG--RGNAVAKSEEELSSAITALGGFDRGLYVEK 61
R+ ++ G P+ VK R G G + S ++L +A+ D + VE
Sbjct: 175 PRSTLHRQECERLGLPVFVKPARG---GSSIGVSRVSSWDQLPAAVARARRHDPKVIVEA 231
Query: 62 WAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHI----------------VKAPAAV 105
+EL V+ D ++ + E + PA V
Sbjct: 232 AIS-GRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKV 290
Query: 106 PWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEV 147
+++E +A +A ++++ G+ V+ F T++G + +NE+
Sbjct: 291 DDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPV-INEI 331
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative
splicing, ATP-binding, biotin, fatty acid biosynthesis,
ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens}
PDB: 3jrw_A*
Length = 587
Score = 39.6 bits (93), Expect = 0.002
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYD---GRGNAVAKSEEELSSAI-TALGGF-DRGL 57
V D++ A ++ G+PLM+K A + G+G A+S E+ +
Sbjct: 230 VKDVDEGLEAAERIGFPLMIK----ASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPI 285
Query: 58 YVEKWA 63
++ K A
Sbjct: 286 FLMKLA 291
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.002
Identities = 60/397 (15%), Positives = 114/397 (28%), Gaps = 103/397 (25%)
Query: 64 PFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVP------WKISELATDVA 117
FV V+ KSIL KE I HI+ + AV W + ++
Sbjct: 28 AFVDNFDCKDVQDMPKSIL--------SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 118 HKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGL 177
K V + N + L++ + T Y Q ++
Sbjct: 80 QKFVEEVL-----------RINYKFLMSPIKTEQRQPSMMTRM--YIEQRDRLYNDNQVF 126
Query: 178 PLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQL--IGK---ALSI----------PGATV 222
+ S P + L E + + + GK AL + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCLSYKVQCKMDFK-I 184
Query: 223 HW-----YDKPE--MRQQRKMGHI-----TIVGSSMGLVESRLNSLLKEDSSDCQFKILP 270
W + PE + +K+ + T ++ R++S+ E + K
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 271 RIGIIMGSDSDLPVMKDA--AKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEII 328
L V+ + AK F++ +I L+ + R ++
Sbjct: 245 N---------CLLVLLNVQNAKAWNAFNL--SCKI--------LLTT-------RFKQVT 278
Query: 329 -IAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQM-PRGVPVATVAINNA 386
A H+ + L + + LL + P+ +P + N
Sbjct: 279 DFLSAATTTHIS-LDHHSMTL---------TPDEVKSLLLKYLDCRPQDLPREVLTTN-- 326
Query: 387 TNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKA 423
+ ++ D A + + + D LT
Sbjct: 327 ----PRRLSIIAESIRDGLATWDNW-KHVNCDKLTTI 358
Score = 32.9 bits (74), Expect = 0.25
Identities = 43/237 (18%), Positives = 64/237 (27%), Gaps = 72/237 (30%)
Query: 110 SELATDVA--HKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQF 167
+ +A DV +K ++ IF W N E + I+ +TS+
Sbjct: 164 TWVALDVCLSYKVQCKMDF-KIF-----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSR- 216
Query: 168 EQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSI------PGAT 221
D S I + E L + L +
Sbjct: 217 ------------SDHSSNIKLRI-----HSIQAELRRLLKSKPYENCLLVLLNVQNAK-- 257
Query: 222 VHW-------------YDKP--EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQF 266
W K + HI++ SM L + SLL DC+
Sbjct: 258 -AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRP 315
Query: 267 KILPR---------IGIIMGSDSDLPVMKD------AAKILTMFSV------PHEVR 302
+ LPR + II S D D K+ T+ P E R
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing,
ATP-binding, biotin, fatty acid biosynthesis, ligase,
lipid synthesis, manganese; 2.10A {Homo sapiens} PDB:
3gid_A 2hjw_A 2yl2_A
Length = 540
Score = 39.2 bits (92), Expect = 0.002
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYD---GRGNAVAKSEEELSSAI-TALGGF-DRGL 57
V D++ A ++ G+PLM+K A + G+G A+S E+ +
Sbjct: 214 VKDVDEGLEAAERIGFPLMIK----ASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPI 269
Query: 58 YVEKWA 63
++ K A
Sbjct: 270 FLMKLA 275
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 38.8 bits (91), Expect = 0.003
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYD---GRGNAVAKSEEELSSAI-TALGGF-DRGL 57
E + K+ G+P+M+K A + G+G + EE+ + A +
Sbjct: 220 CTSPEDGLQKAKRIGFPVMIK----ASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPI 275
Query: 58 YVEKWA 63
++ K A
Sbjct: 276 FIMKLA 281
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 38.8 bits (91), Expect = 0.003
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAIT-----ALGGF-DR 55
+ D + A+ K+ YP+MVKS G G SE+++ F D
Sbjct: 165 LIKDAKEAKEVAKKLEYPVMVKSTA-GGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDA 223
Query: 56 GLYVEKW 62
G+++E++
Sbjct: 224 GVFMERF 230
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 35.9 bits (84), Expect = 0.020
Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 31/150 (20%)
Query: 14 KQFGYPLMVKSKRLAYDG--RGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAV 71
+ G+PL+VK G G + ++EL S + + +D + +EK+ +E+
Sbjct: 130 DKLGFPLVVKPNS---GGSSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIK-GEEITC 185
Query: 72 IVVRGRDKSILCYPVVETIHKEN--------------ICHIVKAPAAVPWKISELATDVA 117
+ G+ P++ H +P ++ E +
Sbjct: 186 SIFDGKQ-----LPIISIRHAAEFFDYNAKYDDASTIEE-----VIELPAELKERVNKAS 235
Query: 118 HKAVSSLEGAGIFAVELFWTNNGQILLNEV 147
+L+ + V++ +G + EV
Sbjct: 236 LACYKALKCSVYARVDMMVK-DGIPYVMEV 264
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein
structure initiative; HET: SO4 GOL; 1.49A {Clostridium
acetobutylicum atcc 824}
Length = 196
Score = 34.0 bits (78), Expect = 0.048
Identities = 14/111 (12%), Positives = 44/111 (39%), Gaps = 15/111 (13%)
Query: 320 AHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVA 379
+ ++ II+ + ++ +P I + V + D + ++ + + +A
Sbjct: 47 GLQDEVDAIISRGATSDYI----KKSVSIPSISIKV--TRFDTMRAVYNAKRFGN--ELA 98
Query: 380 TVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDG 430
+A ++ MLG ++++++ D++ T K++ +
Sbjct: 99 LIAYKHSIVDKHEIEAMLGV-------KIKEFLFSSEDEITTLISKVKTEN 142
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 34.9 bits (80), Expect = 0.050
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 2 EVNDLESARRAGKQF-GYPLMVKSKRLAYDGRG---NAVAKSEEELSSAITALGGFDRGL 57
E D + A Q P++VK K + G G + + AI D +
Sbjct: 504 EFTDRKEALNYFSQIQDKPIVVKPKSTNF-GLGISIFKTSANLASYEKAIDIAFTEDSAI 562
Query: 58 YVEKWAPFVKELAVIVVRGR 77
VE++ E V+ G
Sbjct: 563 LVEEYIE-GTEYRFFVLEGD 581
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 34.2 bits (79), Expect = 0.088
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 2 EVNDLESARRAGKQFGYPLMVKSKRLAYD---GRGNAVAKSEEELSSAIT-----ALGGF 53
+ D + A + Q GYP+M+K A G+G +A +++E A F
Sbjct: 137 LIEDADEAVKISNQIGYPVMIK----ASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSF 192
Query: 54 -DRGLYVEKW 62
D +++EK+
Sbjct: 193 GDDRIFIEKF 202
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 33.7 bits (77), Expect = 0.13
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 2 EVNDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAV----AKSEEELSSAITALGGFDRG 56
E LE A + F +++K K Y G G + ++ E+ + A+ D+
Sbjct: 509 EFTSLEKAVASYALFENRAVVIKPKSTNY-GLGITIFQQGVQNREDFAKALEIAFREDKE 567
Query: 57 LYVEKWAPFVKELAVIVVRGR 77
+ VE + E V+
Sbjct: 568 VMVEDYLV-GTEYRFFVLGDE 587
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 31.5 bits (72), Expect = 0.58
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAIT-----ALGGF-DR 55
E DLE+ RR + GYP+++K+ G+G V + E EL+ A++ A F D
Sbjct: 163 EAQDLETFRREAGRIGYPVLLKAAA-GGGGKGMKVVEREAELAEALSSAQREAKAAFGDA 221
Query: 56 GLYVEKW 62
+ VEK+
Sbjct: 222 RMLVEKY 228
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine
5'-phosphate oxidase-related protein, structura
genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme}
Length = 195
Score = 30.2 bits (68), Expect = 0.82
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 218 PGATVHWYDKPEMRQQRKMGHITIVGSS 245
P A + WY Q R G +T++ S
Sbjct: 73 PWAEICWYFPNTREQFRMAGDLTLISSD 100
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 30.1 bits (68), Expect = 1.2
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 23/159 (14%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVA-----KSEEELSSAITALGGFDRG- 56
D E A R + FGYP+++K G +A LGGF
Sbjct: 109 ATDREEALRLMEAFGYPVVLK---PVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQL 165
Query: 57 LYVEKWAPFV-KELAVIVVRGRDKSILCYPVVETIHKEN---ICHIVKAPAAVPWKISEL 112
Y++++ +++ V VV R + I++ + I + + A ++E
Sbjct: 166 FYIQEYVEKPGRDIRVFVVGER--------AIAAIYRRSAHWITNTARGGQAENCPLTEE 217
Query: 113 ATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151
++ KA ++ G G+ AV+LF + G +L+NEV
Sbjct: 218 VARLSVKAAEAV-GGGVVAVDLFESERG-LLVNEVNHTM 254
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma,
lipid binding protein; 1.7A {Homo sapiens} SCOP:
a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Length = 165
Score = 29.7 bits (66), Expect = 1.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 403 DLRARMQQYMEDMRDDVLTKAEKLQK 428
+LR R+ ++ +R +L A+ LQK
Sbjct: 132 ELRVRLASHLRKLRKRLLRDADDLQK 157
Score = 29.3 bits (65), Expect = 1.4
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 403 DLRARMQQYMEDMRDDVLTKAEKLQK 428
D+R R+ QY +++ + E+L+
Sbjct: 110 DVRGRLVQYRGEVQAMLGQSTEELRV 135
Score = 28.9 bits (64), Expect = 2.1
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 403 DLRARMQQYMEDMRDDVLTKAEKLQK 428
+AR+ MED+R ++ ++Q
Sbjct: 99 AAQARLGADMEDVRGRLVQYRGEVQA 124
Score = 28.5 bits (63), Expect = 3.1
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 402 ADLRARMQQYMEDMRDDVLTKAEKLQK 428
+++A + Q E++R + + KL+K
Sbjct: 120 GEVQAMLGQSTEELRVRLASHLRKLRK 146
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high
density lipop (HDL), lipid binding, plasma, lipid
transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Length = 185
Score = 29.7 bits (66), Expect = 1.3
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 403 DLRARMQQYMEDMRDDVLTKAEKLQKD 429
+L+ ++ E+MRD + L+
Sbjct: 137 ELQEKLSPLGEEMRDRARAHVDALRTH 163
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma
protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1
PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Length = 191
Score = 29.4 bits (65), Expect = 1.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 403 DLRARMQQYMEDMRDDVLTKAEKLQK 428
+LR R+ ++ +R +L A+ LQK
Sbjct: 132 ELRVRLASHLRKLRKRLLRDADDLQK 157
Score = 29.0 bits (64), Expect = 2.0
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 403 DLRARMQQYMEDMRDDVLTKAEKLQK 428
DL+ R+ Y R+ +++
Sbjct: 154 DLQKRLAVYQAGAREGAERGLSAIRE 179
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 29.9 bits (68), Expect = 1.9
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 404 LRARMQQYMEDMRDDVLTK 422
+A + +E+MRD+ L++
Sbjct: 765 FKAGLLGLLEEMRDERLSR 783
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime
disease; NMR {Homo sapiens}
Length = 307
Score = 29.4 bits (65), Expect = 2.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 403 DLRARMQQYMEDMRDDVLTKAEKLQK 428
+LR R+ ++ +R +L A+ LQK
Sbjct: 140 ELRVRLASHLRKLRKRLLRDADDLQK 165
Score = 29.0 bits (64), Expect = 3.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 402 ADLRARMQQYMEDMRDDVLTKAEKLQK 428
A L++R + EDM+ + EK+Q
Sbjct: 267 ARLKSRFEPLAEDMQRQWAGQVEKVQA 293
>2rre_A NVL2, putative uncharacterized protein; nucleolar localization
signal, RNA binding, alternatively SP domain, nuclear
protein; NMR {Mus musculus}
Length = 78
Score = 27.4 bits (60), Expect = 2.1
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 395 RMLGFGDADLRARMQQYMEDMRD----DVLTKAEKLQK 428
R F D L+ R+ QY+ R D A LQ+
Sbjct: 8 RPGVFVDRKLKQRVIQYLSSNRCGKYVDTGILASDLQR 45
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 29.6 bits (67), Expect = 2.5
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 404 LRARMQQYMEDMRDDVLTK-AEKLQK 428
+A + +E+MRD+ L+K Q
Sbjct: 762 FKAGVLGNLEEMRDERLSKIISMFQA 787
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 29.3 bits (66), Expect = 2.8
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 404 LRARMQQYMEDMRDDVLTK-AEKLQK 428
RA Y+E +R D L ++QK
Sbjct: 751 FRAGQVAYLEKIRADKLRAACIRIQK 776
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 29.1 bits (66), Expect = 3.1
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 404 LRARMQQYMEDMRDDVLTK-AEKLQK 428
RA Y+E +R D L ++QK
Sbjct: 751 FRAGQVAYLEKIRADKLRAACIRIQK 776
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 29.2 bits (66), Expect = 3.3
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 404 LRARMQQYMEDMRDDVLTKAEKLQK 428
RA + +E+ R TK++ L++
Sbjct: 742 FRAGVLAQLEEERASEQTKSDYLKR 766
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 28.5 bits (64), Expect = 3.9
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 228 PEMRQQRKMGHITIVGSSMGLV 249
P+M+++ G + + GS GL+
Sbjct: 127 PDMKRRGS-GRVLVTGSVGGLM 147
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9;
2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Length = 243
Score = 28.2 bits (62), Expect = 5.5
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 402 ADLRARMQQYMEDMRDDVLTKAEKLQK 428
LR M + +E+++ V + QK
Sbjct: 80 EGLRQEMSKDLEEVKAKVQPYLDDFQK 106
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 28.3 bits (63), Expect = 5.5
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 7/72 (9%)
Query: 316 YASSAHERGIEIIIAGAGGAAHLPGM---VAARTPLPV-IGVPVRASALDGLDSLLSIVQ 371
+ E E+ GG + L G+ + + + P A A+D Q
Sbjct: 298 FRIQLEEASPEVGY-LLGGGSKLRGLASLLTDTLGVNLEPVNPWEAVAVD--PKRFESEQ 354
Query: 372 MPRGVPVATVAI 383
+ P VA+
Sbjct: 355 LQEIGPEFAVAL 366
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W,
structural genomics, PR structure initiative; 2.14A
{Rhodococcus jostii}
Length = 289
Score = 27.9 bits (63), Expect = 6.3
Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 20/96 (20%)
Query: 303 IVSAHRTPDLMFSYASSAHERGIE-IIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALD 361
++SA + E I+ G G +A R P V+ +
Sbjct: 45 MLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDTDELGALADRVPALVVARASGLPGVG 104
Query: 362 GLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRML 397
V ++ LAV L
Sbjct: 105 ------------------AVRGDDVA-GITLAVDHL 121
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 28.5 bits (64), Expect = 6.3
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 404 LRARMQQYMEDMRDDVLTK-AEKLQK 428
RA +E+ R+ L K
Sbjct: 746 FRAGQLARIEEAREQRLGSEQTKSDY 771
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET:
SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A*
3ssm_A*
Length = 419
Score = 28.0 bits (61), Expect = 6.5
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 317 ASSAHERGIEIIIAGAGG---AAHLPGMVAARTPLPVIGVPVRA--SALDGLDSLLSIVQ 371
+ H+ + + + L + +R P P PV + + G + ++
Sbjct: 38 LAGGHDSELRELTQKYDPAMISRLLVAEILSRCPPPSNDTPVLVELAIVHGSERFRHFLR 97
Query: 372 MPRGVPVATVA 382
+ R P+ V
Sbjct: 98 VVRDSPIRPVG 108
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine
nucleotid structural genomics, NPPSFA; 2.80A {Thermus
thermophilus}
Length = 417
Score = 27.8 bits (63), Expect = 6.9
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 4 NDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITAL 50
+ A ++ G P++VK LA G+G VA + A+ +
Sbjct: 123 REPLEALAYLEEVGVPVVVKDSGLAA-GKGVTVAFDLHQAKQAVANI 168
>1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A
{Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A
Length = 364
Score = 27.9 bits (61), Expect = 7.0
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 203 GFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKED 260
G+ + + K + D ++ GH + + L + RL+ L +
Sbjct: 74 GYIPVNPNLSKLFGRAPEVIARADN-DVNSSLAHGHTAVD---LTLSKERLDYLRQAG 127
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ALS collaborative
crystallography; 2.15A {Ehrlichia chaffeensis}
Length = 442
Score = 27.8 bits (63), Expect = 7.9
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 4 NDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAI 47
D SA + + PL+VK+ LA G+G + + EE +A+
Sbjct: 145 VDTNSAYKFIDKHKLPLVVKADGLAQ-GKGTVICHTHEEAYNAV 187
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide
synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus
kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Length = 451
Score = 27.9 bits (63), Expect = 8.3
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 4 NDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAI 47
E A+ +Q G P+++K+ LA G+G VA++ EE +A
Sbjct: 145 TSYEEAKAYIEQKGAPIVIKADGLAA-GKGVTVAQTVEEALAAA 187
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 28.0 bits (63), Expect = 8.3
Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 404 LRARMQQYMEDMRDDVLTK-AEKLQK-DGW 431
R + + AE +++ + W
Sbjct: 754 FRPGKFAEFDQIMKSDPDHLAELVKRVNHW 783
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 27.7 bits (61), Expect = 9.0
Identities = 25/150 (16%), Positives = 40/150 (26%), Gaps = 27/150 (18%)
Query: 262 SDCQFKILPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH 321
+D Q K + + DA + MF +P VR V A R
Sbjct: 6 TDLQSKTNIDPLAM---NDSFLAAADALAVDPMFGIPANVREVIARRG------------ 50
Query: 322 ERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPV--- 378
++I G G V P VI G ++ G+P+
Sbjct: 51 -NATRLVILGTKGFGAHLMNVRHERPCEVIAAVDDFRYHSG--------ELYYGLPIIST 101
Query: 379 ATVAINNATNAGLLAVRMLGFGDADLRARM 408
+ L+A+ +
Sbjct: 102 DRFTELATHDRDLVALNTCRYDGPKRFFDQ 131
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal
binding; HET: ANP; 2.10A {Bacillus subtilis} PDB:
2xd4_A*
Length = 422
Score = 27.4 bits (62), Expect = 9.4
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 4 NDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAI 47
+ A+ ++ G P+++K+ LA G+G VA +EEE + +
Sbjct: 124 TSFDEAKAYVQEKGAPIVIKADGLAA-GKGVTVAMTEEEAIACL 166
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide
synthetase, GAR synthetase, ATP B purine nucleotide
biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus}
PDB: 2yya_A
Length = 424
Score = 27.4 bits (62), Expect = 9.6
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 4 NDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAI 47
D E A+ ++ G P++VK+ LA G+G V ++ E+ +
Sbjct: 124 TDFEKAKEYVEKVGAPIVVKADGLAA-GKGAVVCETVEKAIETL 166
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.395
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,770,076
Number of extensions: 432701
Number of successful extensions: 1470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1364
Number of HSP's successfully gapped: 118
Length of query: 437
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 341
Effective length of database: 4,021,377
Effective search space: 1371289557
Effective search space used: 1371289557
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)