BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013730
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Cyclophilin 38
(Atcyp38)
Length = 369
Score = 629 bits (1623), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/347 (86%), Positives = 331/347 (95%)
Query: 91 VSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQA 150
VSVLISGPPIKDP ALLRYALPIDNKA+REVQKPLEDITDSLKIAGVKALD VERNVRQA
Sbjct: 23 VSVLISGPPIKDPEALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNVRQA 82
Query: 151 SRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNYV 210
SRTL+QGKS+IV G AESKK+HG E+++KLEAGM ++ +IVEDR RDAVAPKQKE+L YV
Sbjct: 83 SRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYV 142
Query: 211 GGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVT 270
GG+EEDMVDGFPYEVPEEY++MPLLKGRA+VDMKVK+KDNPN+++CVFRIVLDGYNAPVT
Sbjct: 143 GGIEEDMVDGFPYEVPEEYRNMPLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVT 202
Query: 271 AGNFVDLVQRHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKS 330
AGNFVDLV+RHFYDGMEIQR+DGFVVQTGDPEGPAEGFIDPSTEKTRT+PLEIMV GEK+
Sbjct: 203 AGNFVDLVERHFYDGMEIQRSDGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKT 262
Query: 331 PFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANIL 390
PFYG+TLEELGLYKAQ +PFNAFGTMAMAR+EFE++SGSSQVFWLLKESELTPSN+NIL
Sbjct: 263 PFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNIL 322
Query: 391 DGRYAVFGYVTENEGLLADVKVGDVIQSIQVVSGLENLVNPSYKIAA 437
DGRYAVFGYVT+NE LAD+KVGDVI+SIQVVSGLENL NPSYKIA
Sbjct: 323 DGRYAVFGYVTDNEDFLADLKVGDVIESIQVVSGLENLANPSYKIAG 369
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 37/154 (24%)
Query: 260 IVLDGY--NAPVTAGNFVDLVQRHFYDGMEIQR-ADGFVVQTGDPEGPAEGFIDPSTEKT 316
IVL+ Y +AP T NF +L +R +Y+G + R F++Q GDP G G
Sbjct: 23 IVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG--------- 73
Query: 317 RTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWL 376
+ YG E+ + L F G +AMA + N SQ F
Sbjct: 74 ------------GASIYGKQFED----ELHPDLKFTGAGILAMANAGPDTN--GSQFFVT 115
Query: 377 LKESELTPSNANILDGRYAVFGYVTENEGLLADV 410
L ++ LDG++ +FG V + G++ V
Sbjct: 116 LAPTQW-------LDGKHTIFGRVCQGIGMVNRV 142
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 37/154 (24%)
Query: 260 IVLDGY--NAPVTAGNFVDLVQRHFYDGMEIQR-ADGFVVQTGDPEGPAEGFIDPSTEKT 316
IVL+ Y +AP T NF +L +R +Y+G + R F++Q GDP G G
Sbjct: 23 IVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG--------- 73
Query: 317 RTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWL 376
+ YG E+ + L F G +AMA + N SQ F
Sbjct: 74 ------------GASIYGKQFED----ELHPDLKFTGAGILAMANAGPDTN--GSQFFVT 115
Query: 377 LKESELTPSNANILDGRYAVFGYVTENEGLLADV 410
L ++ LDG++ +FG V + G++ V
Sbjct: 116 LAPTQW-------LDGKHTIFGRVCQGIGMVNRV 142
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 37/154 (24%)
Query: 260 IVLDGY--NAPVTAGNFVDLVQRHFYDGMEIQR-ADGFVVQTGDPEGPAEGFIDPSTEKT 316
IVL+ Y +AP T NF +L +R +Y+G + R F++Q GDP G G
Sbjct: 23 IVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG--------- 73
Query: 317 RTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWL 376
+ YG E+ + L F G +AMA + N SQ F
Sbjct: 74 ------------GASIYGKQFED----ELHPDLKFTGAGILAMANAGPDTN--GSQFFVT 115
Query: 377 LKESELTPSNANILDGRYAVFGYVTENEGLLADV 410
L ++ LDG++ +FG V + G++ V
Sbjct: 116 LAPTQW-------LDGKHTIFGRVCQGIGMVNRV 142
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 56/136 (41%), Gaps = 35/136 (25%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMV 325
AP NF+ L +YD R GF+VQ GDP G G
Sbjct: 45 APKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSG------------------ 86
Query: 326 EGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPS 385
GE YGA ++ + ++L FN G +AMA DN SQ F+ L
Sbjct: 87 -GES--IYGAPFKD----EFHSRLRFNRRGLVAMANAGSHDN--GSQFFFTL-------G 130
Query: 386 NANILDGRYAVFGYVT 401
A+ L+ ++ +FG VT
Sbjct: 131 RADELNNKHTIFGKVT 146
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 35/154 (22%)
Query: 258 FRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKT 316
F + L Y++P T NF L + FYD R FV+Q GDP G +G
Sbjct: 50 FEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG--------- 100
Query: 317 RTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWL 376
YG E+ + +L G ++M+ + N+ SSQ F
Sbjct: 101 ------------GKSIYGEYFED----EINKELKHTGAGILSMSNN--GPNTNSSQFF-- 140
Query: 377 LKESELTPSNANILDGRYAVFGYVTENEGLLADV 410
+T + LDG++ +F V++N + ++
Sbjct: 141 -----ITLAPLPHLDGKHTIFARVSKNMTCIENI 169
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 32/142 (22%)
Query: 262 LDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIP 320
LD APV+ NFVD V FY+ R GF++Q G GF + +K P
Sbjct: 20 LDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGG-------GFTEQMQQKKPNPP 72
Query: 321 LEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKES 380
++ + GL N GT+AMAR +D S +SQ F + ++
Sbjct: 73 IKNEADN-------------GLR--------NTRGTIAMARTADKD-SATSQFFINVADN 110
Query: 381 ELTPSNANILDGRYAVFGYVTE 402
D YAVFG V +
Sbjct: 111 AFLDHGQR--DFGYAVFGKVVK 130
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 35/137 (25%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQR-ADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMV 325
P T NF+ L ++Y+G R GF+VQTGDP G G
Sbjct: 21 TPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG------------------ 62
Query: 326 EGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPS 385
+ +G E+ + L N G ++MA + N+ SQ F +T
Sbjct: 63 ---GNSIWGKKFED----EYSEYLKHNVRGVVSMANN--GPNTNGSQFF-------ITYG 106
Query: 386 NANILDGRYAVFGYVTE 402
LD +Y VFG V +
Sbjct: 107 KQPHLDMKYTVFGKVID 123
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 31/162 (19%)
Query: 252 NVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFID 310
+ + V ++ LD AP T NF++ V++ YDG R +GF++Q G GF
Sbjct: 9 HTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGG-------GFEP 61
Query: 311 PSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGS 370
+K P+ +A L + + T+AMAR + +S +
Sbjct: 62 GLKQKPTDAPI--------------------ANEANNGLKNDTY-TIAMARTN-DPHSAT 99
Query: 371 SQVFWLLKESELTPSNANILDGR-YAVFGYVTENEGLLADVK 411
+Q F + ++E ++ G YAVFG V E + ++ +K
Sbjct: 100 AQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIK 141
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 32/142 (22%)
Query: 262 LDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIP 320
LD APV+ NFVD V FY+ R GF++Q G GF + +K P
Sbjct: 20 LDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGG-------GFTEQMQQKKPNPP 72
Query: 321 LEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKES 380
++ + GL N GT+AMAR +D S +SQ F + ++
Sbjct: 73 IKNEADN-------------GLR--------NTRGTIAMARTADKD-SATSQFFINVADN 110
Query: 381 ELTPSNANILDGRYAVFGYVTE 402
D YAVFG V +
Sbjct: 111 AFLDHGQR--DFGYAVFGKVVK 130
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 35/137 (25%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQR-ADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMV 325
P T NF+ L ++Y+G R GF+VQTGDP G G
Sbjct: 27 TPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG------------------ 68
Query: 326 EGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPS 385
+ +G E+ + L N G ++MA + N+ SQ F +T
Sbjct: 69 ---GNSIWGKKFED----EYSEYLKHNVRGVVSMANN--GPNTNGSQFF-------ITYG 112
Query: 386 NANILDGRYAVFGYVTE 402
LD +Y VFG V +
Sbjct: 113 KQPHLDMKYTVFGKVID 129
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMV 325
AP TA NF V+ YDG R DGF++Q G GF +K+ P++
Sbjct: 20 APETAANFEQYVKDGHYDGTIFHRVIDGFMIQGG-------GFEPGMKQKSTRAPIK--- 69
Query: 326 EGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPS 385
+A L + T+AMAR + +S S+Q F +K++
Sbjct: 70 -----------------NEANNGLSNKKY-TIAMARTP-DPHSASAQFFINVKDNAFLDH 110
Query: 386 NANILDGR-YAVFGYVTENEGLLADVK 411
A G YAVFG V E ++ +K
Sbjct: 111 TAPTAHGWGYAVFGEVVEGTDVVDRIK 137
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 35/137 (25%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMV 325
P T NF + +Y+G R GF++QTGDP G G
Sbjct: 42 CPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMG------------------ 83
Query: 326 EGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPS 385
GE +G E+ + P+ T++MA N+ SQ F +T
Sbjct: 84 -GES--IWGGEFEDEFHSTLRHDRPY----TLSMANA--GSNTNGSQFF-------ITVV 127
Query: 386 NANILDGRYAVFGYVTE 402
LD ++ VFG VT+
Sbjct: 128 PTPWLDNKHTVFGRVTK 144
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQ 297
P T NF+ L ++H+YDG R+ FV+Q
Sbjct: 40 TPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQ 71
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 16/58 (27%)
Query: 259 RIVLDGYNAPVTAGNFVDLVQRH---------------FYDGMEIQRA-DGFVVQTGD 300
+I L G +AP T NFV L Q FYDG R GF++Q GD
Sbjct: 36 KIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGD 93
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 35/135 (25%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQR-ADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMV 325
P NF+ L +Y + GF++Q GDP G +G
Sbjct: 37 CPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKG------------------ 78
Query: 326 EGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARD--EFEDNSGSSQVFWLLKESELT 383
GE YG ++ + +L ++ G ++MA + N+ SQ F +T
Sbjct: 79 -GES--IYGRYFDD----EIYPELKYDRRGILSMASKGASKKPNTNGSQFF-------IT 124
Query: 384 PSNANILDGRYAVFG 398
S+ L+G Y +FG
Sbjct: 125 YSSLPQLNGEYVIFG 139
>pdb|3HNP|A Chain A, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|B Chain B, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|C Chain C, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|D Chain D, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|E Chain E, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|F Chain F, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
Length = 353
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 95/243 (39%), Gaps = 28/243 (11%)
Query: 110 ALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESK 169
A P + + V L+++ + +I V P + A + + GKS+IVE
Sbjct: 43 AAPYEERGVY-FTTDLDELLNDKEIQVVTICTPAHTHYELAKKVILAGKSVIVEKPFCDT 101
Query: 170 KEHGMELLQ-KLEAGMDELQQIVEDRDRDAVAPKQKELLNYVGGV--EEDMVDGF----- 221
EH ELL E G+ + D D +A KQ ++G + E +D F
Sbjct: 102 VEHAKELLALGREKGVVVMPYQNRRFDGDFLAVKQVVEQGFLGDIIEIESHIDYFRPGSI 161
Query: 222 PYEVPEEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAG--NFVDLVQ 279
+E P+E S L G T+D + + PN + D N V N+ D V
Sbjct: 162 THEAPKEEGSFYSL-GIHTMDRMISLFGRPNT------VTYDIRNNEVEGAVDNYFD-VG 213
Query: 280 RHFYDGMEIQRADGFVVQTGDP----EGPAEGFIDPSTEKTRT-IPLEIMVE----GEKS 330
H+ + ++I+ +V P G FI ++ + IM E GE S
Sbjct: 214 LHYGNQLKIKLKTNHIVAKDYPRFIVHGTNGSFIKYGEDQQENDLKAGIMPESAGFGEDS 273
Query: 331 PFY 333
P Y
Sbjct: 274 PMY 276
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 43/148 (29%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMV 325
P+ NFV L +Y R F+VQ GDP G G D + + P ++
Sbjct: 42 CPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGK---PFDV-- 96
Query: 326 EGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMA------RDEFEDNSGSS------QV 373
E P +L F G + +A +D D G S Q
Sbjct: 97 --ETHP----------------RLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQF 138
Query: 374 FWLLKESELTPSNANILDGRYAVFGYVT 401
F +T + A++L+ Y +FG VT
Sbjct: 139 F-------ITLARADVLNNAYTLFGKVT 159
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 31/147 (21%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMV 325
AP T NF+D + FY+ R +GF++Q G GF +K P++
Sbjct: 20 APETVKNFLDYCREGFYNNTIFHRVINGFMIQGG-------GFEPGMKQKATKEPIK--- 69
Query: 326 EGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPS 385
+A L N GT+AMAR + +S ++Q F + +++
Sbjct: 70 -----------------NEANNGLK-NTRGTLAMARTQ-APHSATAQFFINVVDNDFLNF 110
Query: 386 NANILDGR-YAVFGYVTENEGLLADVK 411
+ L G Y VF V + ++ +K
Sbjct: 111 SGESLQGWGYCVFAEVVDGMDVVDKIK 137
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 45/166 (27%)
Query: 267 APVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMV 325
AP T NF+D + FY+ R +GF++Q G GF +K P++
Sbjct: 20 APETVKNFLDYCREGFYNNTIFHRVINGFMIQGG-------GFEPGMKQKATKEPIK--- 69
Query: 326 EGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPS 385
+A L N GT+AMAR + +S ++Q F + +++
Sbjct: 70 -----------------NEANNGLK-NTRGTLAMARTQ-APHSATAQFFINVVDNDFLNF 110
Query: 386 NANILDGR-YAVF--------------GYVTENEGLLADVKVGDVI 416
+ L G Y VF G T G+ DV DVI
Sbjct: 111 SGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVI 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,695,392
Number of Sequences: 62578
Number of extensions: 536051
Number of successful extensions: 1336
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 39
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)