Query 013730
Match_columns 437
No_of_seqs 243 out of 1369
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:48:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01924 cyclophilin_TLP40_like 100.0 1.1E-44 2.3E-49 336.6 19.1 174 251-424 2-176 (176)
2 COG0652 PpiB Peptidyl-prolyl c 100.0 5.5E-39 1.2E-43 293.6 13.0 133 253-420 6-140 (158)
3 cd01928 Cyclophilin_PPIL3_like 100.0 5.6E-36 1.2E-40 272.1 16.3 126 254-413 8-134 (153)
4 cd01927 cyclophilin_WD40 cyclo 100.0 6E-36 1.3E-40 270.4 15.1 127 253-413 4-131 (148)
5 cd01923 cyclophilin_RING cyclo 100.0 1.6E-35 3.4E-40 270.6 17.4 136 254-423 7-154 (159)
6 cd01922 cyclophilin_SpCYP2_lik 100.0 1E-35 2.3E-40 268.4 15.1 126 253-412 4-130 (146)
7 cd01921 cyclophilin_RRM cyclop 100.0 4.3E-35 9.3E-40 269.2 16.0 145 253-423 4-160 (166)
8 KOG0881 Cyclophilin type pepti 100.0 1.3E-35 2.8E-40 260.5 8.5 143 239-423 10-159 (164)
9 KOG0546 HSP90 co-chaperone CPR 100.0 1.3E-34 2.9E-39 290.3 12.6 152 237-426 7-177 (372)
10 KOG0880 Peptidyl-prolyl cis-tr 100.0 4.2E-34 9E-39 266.8 14.4 163 227-429 30-204 (217)
11 cd01925 cyclophilin_CeCYP16-li 100.0 1.4E-33 3.1E-38 260.6 17.7 149 233-425 2-163 (171)
12 PRK10903 peptidyl-prolyl cis-t 100.0 8.8E-33 1.9E-37 259.7 17.3 138 236-412 26-164 (190)
13 PRK10791 peptidyl-prolyl cis-t 100.0 1.3E-32 2.9E-37 252.9 17.5 130 254-412 7-138 (164)
14 PTZ00060 cyclophilin; Provisio 100.0 1.9E-32 4.1E-37 255.9 17.2 151 235-423 12-178 (183)
15 PLN03149 peptidyl-prolyl isome 100.0 1.9E-32 4.2E-37 256.6 17.1 158 229-424 9-183 (186)
16 cd01926 cyclophilin_ABH_like c 100.0 3.8E-32 8.2E-37 249.1 16.8 135 241-413 3-147 (164)
17 cd01920 cyclophilin_EcCYP_like 100.0 2.5E-32 5.4E-37 248.5 15.0 125 253-413 4-134 (155)
18 KOG0883 Cyclophilin type, U bo 100.0 7E-33 1.5E-37 278.7 11.4 140 231-412 270-410 (518)
19 KOG0882 Cyclophilin-related pe 100.0 1.1E-32 2.5E-37 281.5 10.1 127 253-413 411-538 (558)
20 PTZ00221 cyclophilin; Provisio 100.0 5.5E-31 1.2E-35 256.5 17.8 134 238-412 52-198 (249)
21 KOG0884 Similar to cyclophilin 100.0 5.3E-31 1.2E-35 230.3 11.3 125 254-412 8-133 (161)
22 cd00317 cyclophilin cyclophili 100.0 2.3E-30 4.9E-35 230.8 15.3 127 253-414 4-131 (146)
23 KOG0885 Peptidyl-prolyl cis-tr 100.0 9.2E-31 2E-35 262.5 11.8 152 228-423 4-168 (439)
24 PF00160 Pro_isomerase: Cyclop 100.0 1E-29 2.3E-34 228.3 15.7 129 255-414 9-139 (155)
25 KOG0879 U-snRNP-associated cyc 100.0 6.3E-30 1.4E-34 226.9 9.4 137 238-412 10-156 (177)
26 KOG0111 Cyclophilin-type pepti 100.0 4.5E-29 9.8E-34 236.7 9.5 151 238-426 136-296 (298)
27 KOG0415 Predicted peptidyl pro 99.9 2.6E-27 5.5E-32 236.6 13.2 142 254-424 8-164 (479)
28 KOG0865 Cyclophilin type pepti 99.9 7.1E-22 1.5E-26 182.5 7.2 136 239-412 4-147 (167)
29 TIGR03042 PS_II_psbQ_bact phot 96.8 0.0095 2.1E-07 54.5 9.5 93 116-211 43-135 (142)
30 PLN02956 PSII-Q subunit 96.7 0.022 4.7E-07 54.1 11.2 92 118-212 89-180 (185)
31 PF05757 PsbQ: Oxygen evolving 96.6 0.00082 1.8E-08 64.6 1.5 157 54-213 29-197 (202)
32 PLN02729 PSII-Q subunit 96.4 0.039 8.6E-07 53.3 11.3 158 51-214 47-216 (220)
33 TIGR03268 methan_mark_3 putati 95.4 0.059 1.3E-06 57.9 8.6 123 239-417 185-308 (503)
34 PRK00969 hypothetical protein; 95.4 0.056 1.2E-06 58.2 8.3 126 239-421 188-314 (508)
35 PRK00969 hypothetical protein; 94.3 0.56 1.2E-05 50.8 12.3 63 354-423 116-178 (508)
36 PLN02999 photosystem II oxygen 94.2 0.14 3.1E-06 48.5 6.8 94 119-215 94-187 (190)
37 TIGR03268 methan_mark_3 putati 92.6 1.3 2.7E-05 48.1 11.6 65 354-424 112-176 (503)
38 KOG0882 Cyclophilin-related pe 91.7 0.17 3.7E-06 54.0 3.9 130 255-414 111-243 (558)
39 COG4070 Predicted peptidyl-pro 91.7 0.56 1.2E-05 49.5 7.4 104 255-416 202-309 (512)
40 PF12903 DUF3830: Protein of u 86.0 2.6 5.7E-05 39.0 6.8 42 256-300 8-52 (147)
41 PF04126 Cyclophil_like: Cyclo 71.2 7.6 0.00016 34.3 4.8 58 353-417 61-118 (120)
42 COG4070 Predicted peptidyl-pro 68.0 22 0.00047 38.0 8.0 23 257-279 377-399 (512)
43 PF15368 BioT2: Spermatogenesi 47.8 44 0.00095 31.4 5.5 23 101-123 57-79 (170)
44 PF06622 SepQ: SepQ protein; 40.0 25 0.00054 35.3 2.9 62 370-431 206-280 (305)
45 PF02538 Hydantoinase_B: Hydan 37.0 95 0.0021 34.1 7.1 125 130-265 143-273 (527)
46 PF14389 Lzipper-MIP1: Leucine 36.8 1.9E+02 0.0041 24.3 7.3 49 144-192 27-78 (88)
47 PF02646 RmuC: RmuC family; I 35.3 1.7E+02 0.0037 29.8 8.1 78 175-271 48-130 (304)
48 PF14276 DUF4363: Domain of un 32.0 2E+02 0.0044 24.8 7.1 80 117-206 24-103 (121)
49 smart00502 BBC B-Box C-termina 27.9 1.2E+02 0.0026 25.3 4.9 73 140-212 41-123 (127)
50 PRK10807 paraquat-inducible pr 25.7 1.7E+02 0.0036 32.5 6.6 81 110-193 407-491 (547)
51 PRK11820 hypothetical protein; 24.1 1.2E+02 0.0027 30.9 4.8 52 162-213 139-193 (288)
52 PRK04330 hypothetical protein; 23.7 2.9E+02 0.0063 23.6 6.2 79 116-216 9-87 (88)
53 cd00089 HR1 Protein kinase C-r 23.4 3.7E+02 0.0081 21.2 6.6 62 119-192 5-66 (72)
54 COG1698 Uncharacterized protei 22.8 2.4E+02 0.0052 24.3 5.5 32 183-216 60-91 (93)
55 PF08559 Cut8_C: Cut8 six-heli 21.6 1E+02 0.0023 28.2 3.4 54 146-199 2-55 (143)
56 PF14591 AF0941-like: AF0941-l 21.1 1E+02 0.0022 28.0 3.2 66 115-192 15-82 (127)
57 PF09177 Syntaxin-6_N: Syntaxi 21.1 1.7E+02 0.0037 24.5 4.4 29 172-200 43-73 (97)
58 COG2164 Uncharacterized conser 21.0 14 0.0003 32.7 -2.3 23 395-417 100-122 (126)
59 TIGR03044 PS_II_psb27 photosys 20.9 6.6E+02 0.014 23.1 8.4 82 96-180 34-128 (135)
60 cd05511 Bromo_TFIID Bromodomai 20.8 2.1E+02 0.0046 24.8 5.1 67 117-191 42-111 (112)
61 KOG3251 Golgi SNAP receptor co 20.8 2.3E+02 0.005 27.9 5.7 78 115-193 9-87 (213)
62 cd01148 TroA_a Metal binding p 20.5 2.2E+02 0.0048 27.6 5.7 44 137-193 122-165 (284)
63 PRK10920 putative uroporphyrin 20.0 59 0.0013 34.6 1.7 83 127-216 137-219 (390)
No 1
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=1.1e-44 Score=336.58 Aligned_cols=174 Identities=66% Similarity=1.055 Sum_probs=160.6
Q ss_pred CCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCC
Q 013730 251 PNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEK 329 (437)
Q Consensus 251 ~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~ 329 (437)
++|+.|+|+|+||++.||+||+||++||+.|||||+.|||| ++||||||||.+++.|+.|+.+++.+.+|+|+...+..
T Consensus 2 ~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~ 81 (176)
T cd01924 2 EATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQK 81 (176)
T ss_pred CccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCC
Confidence 35789999999999999999999999999999999999999 99999999999988888899888889999999998888
Q ss_pred CCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHh
Q 013730 330 SPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLAD 409 (437)
Q Consensus 330 ~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~k 409 (437)
.|+|+.++++.+...+.+.++||.+|+|||||++..+|+++|||||++.+++++..+.++|||+|+|||+|++|||||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~ 161 (176)
T cd01924 82 QPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRE 161 (176)
T ss_pred CCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHh
Confidence 99999887655555567889999999999999844479999999999998888888999999999999999999999999
Q ss_pred hhcCCceEEEEEecC
Q 013730 410 VKVGDVIQSIQVVSG 424 (437)
Q Consensus 410 I~~gD~I~Sa~Vv~g 424 (437)
|++||+|++++|++|
T Consensus 162 I~~gd~i~~~~~~~~ 176 (176)
T cd01924 162 LKVGDKIESARVVEG 176 (176)
T ss_pred hcCCCEEEEEEEecC
Confidence 999999999999875
No 2
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-39 Score=293.60 Aligned_cols=133 Identities=36% Similarity=0.493 Sum_probs=113.8
Q ss_pred ceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCC-CCCCcCCCCCcCcCCCccccccCCCC
Q 013730 253 VDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGP-AEGFIDPSTEKTRTIPLEIMVEGEKS 330 (437)
Q Consensus 253 t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~-g~G~~dp~t~~~~~iPlEi~~~g~~~ 330 (437)
|++|+|+|+||++.||+||+||++||+.|||||+.|||| ++||||||||.+. +.|+ ..+.++.|+....
T Consensus 6 t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg------~~~~f~~E~~~~~--- 76 (158)
T COG0652 6 TNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGG------PGPPFKDENFALN--- 76 (158)
T ss_pred ccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCC------CCCCCcccccccc---
Confidence 389999999999999999999999999999999999999 9999999999986 5553 3466776653211
Q ss_pred CCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhh
Q 013730 331 PFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADV 410 (437)
Q Consensus 331 piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI 410 (437)
+ . -|.+|+|||||+ .+|||++||||| +..+.+||||+|+|||+|++|||+|++|
T Consensus 77 ----------~-------~-~~~~G~lsMA~~-g~P~t~~SQFFI-------~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI 130 (158)
T COG0652 77 ----------G-------D-RHKRGTLSMARA-GDPNSNGSQFFI-------TVVDNPFLDGKYTVFGQVVEGMDVVDKI 130 (158)
T ss_pred ----------c-------c-cCCcceEeEccc-CCcCCccCeEEE-------EecCCcccCCCCcEEEEEehhHHHHHHH
Confidence 0 0 156999999998 359999999999 4557899999999999999999999999
Q ss_pred hcCCceEEEE
Q 013730 411 KVGDVIQSIQ 420 (437)
Q Consensus 411 ~~gD~I~Sa~ 420 (437)
+.|+.+.+..
T Consensus 131 ~~~~~~~~~~ 140 (158)
T COG0652 131 KNGDTDDSGY 140 (158)
T ss_pred HcCCccCCCc
Confidence 9988776655
No 3
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=5.6e-36 Score=272.07 Aligned_cols=126 Identities=30% Similarity=0.491 Sum_probs=110.1
Q ss_pred eeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCCCC
Q 013730 254 DECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPF 332 (437)
Q Consensus 254 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~pi 332 (437)
+.|+|+|+||++.||+||+||++||+.|||||+.|||+ ++|++|||||.+++.|+ .++
T Consensus 8 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~---------------------~~~ 66 (153)
T cd01928 8 NLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGG---------------------ESI 66 (153)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCC---------------------Ccc
Confidence 89999999999999999999999999999999999999 99999999998876653 244
Q ss_pred CCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhhc
Q 013730 333 YGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 333 y~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~~ 412 (437)
|+.+++++ ..+.++|+.+|+|+||++ ++++++|||||+ +++.++|||+|+|||+|++|||||++|+.
T Consensus 67 ~~~~~~~e----~~~~~~~~~~G~v~ma~~--~~~~~~SqFfI~-------~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~ 133 (153)
T cd01928 67 WGKKFEDE----FRETLKHDSRGVVSMANN--GPNTNGSQFFIT-------YAKQPHLDGKYTVFGKVIDGFETLDTLEK 133 (153)
T ss_pred CCCccccc----cccCCCcCCCcEEEEeeC--CCCCcccEEEEE-------eCCCcccCCCceEEEEEEeCHHHHHHHHc
Confidence 55556554 234677889999999998 689999999995 45678999999999999999999999975
Q ss_pred C
Q 013730 413 G 413 (437)
Q Consensus 413 g 413 (437)
.
T Consensus 134 ~ 134 (153)
T cd01928 134 L 134 (153)
T ss_pred C
Confidence 3
No 4
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=6e-36 Score=270.37 Aligned_cols=127 Identities=28% Similarity=0.409 Sum_probs=111.4
Q ss_pred ceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCCC
Q 013730 253 VDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSP 331 (437)
Q Consensus 253 t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~p 331 (437)
|+.|+|+|+||.+.||+||+||++||+.|||||+.|||+ ++|++||||+.+++.|+ .+
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~---------------------~~ 62 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGG---------------------ES 62 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCC---------------------Cc
Confidence 489999999999999999999999999999999999999 99999999998776653 34
Q ss_pred CCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhh
Q 013730 332 FYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVK 411 (437)
Q Consensus 332 iy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~ 411 (437)
+|+.+++++ ..+.++|+.+|+||||++ ++|+++||||| ++++.++|||+|+|||+|++|||||++|+
T Consensus 63 ~~~~~~~~e----~~~~~~h~~~G~l~ma~~--~~~s~~SqFfI-------t~~~~p~Ldg~~tvFG~V~~G~dvl~~I~ 129 (148)
T cd01927 63 IWGKEFEDE----FSPSLKHDRPYTLSMANA--GPNTNGSQFFI-------TTVATPWLDNKHTVFGRVVKGMDVVQRIE 129 (148)
T ss_pred ccCCccccc----cccccCcCCCeEEEEeeC--CCCCCCceEEE-------EcCCCcccCCCceEEEEEEcCHHHHHHHH
Confidence 566566554 245678888999999997 69999999999 55667899999999999999999999997
Q ss_pred cC
Q 013730 412 VG 413 (437)
Q Consensus 412 ~g 413 (437)
..
T Consensus 130 ~~ 131 (148)
T cd01927 130 NV 131 (148)
T ss_pred cC
Confidence 54
No 5
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=1.6e-35 Score=270.56 Aligned_cols=136 Identities=27% Similarity=0.466 Sum_probs=117.4
Q ss_pred eeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCCCC
Q 013730 254 DECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPF 332 (437)
Q Consensus 254 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~pi 332 (437)
+.|+|+|+||++.||+||+||++||+.|||+|+.|||+ ++|+|||||+.+++.|+ .++
T Consensus 7 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~---------------------~~~ 65 (159)
T cd01923 7 NKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGG---------------------ESI 65 (159)
T ss_pred ccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCC---------------------ccc
Confidence 89999999999999999999999999999999999999 99999999998776653 345
Q ss_pred CCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhhc
Q 013730 333 YGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 333 y~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~~ 412 (437)
|+..++++ ..+.++|+.+|+|+||++ ++++++||||| ++++.++|||+|+|||+|++|||+|++|+.
T Consensus 66 ~g~~~~~E----~~~~~~h~~~G~v~ma~~--~~~s~~sqFfI-------t~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~ 132 (159)
T cd01923 66 WGKPFKDE----FKPNLSHDGRGVLSMANS--GPNTNGSQFFI-------TYRSCKHLDGKHTVFGRVVGGLETLEAMEN 132 (159)
T ss_pred cCCccCcc----cccCcCcCCCcEEEEeeC--CCCCcccEEEE-------ECCCCcccCCCccEEEEEEcCHHHHHHHHc
Confidence 66556554 245677899999999998 68999999999 556789999999999999999999999976
Q ss_pred CC-----------ceEEEEEec
Q 013730 413 GD-----------VIQSIQVVS 423 (437)
Q Consensus 413 gD-----------~I~Sa~Vv~ 423 (437)
.. +|.++.|..
T Consensus 133 ~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 133 VPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred CCCCCCCCCCCCeEEEEeEEEe
Confidence 42 567776655
No 6
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1e-35 Score=268.41 Aligned_cols=126 Identities=29% Similarity=0.491 Sum_probs=111.5
Q ss_pred ceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCCC
Q 013730 253 VDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSP 331 (437)
Q Consensus 253 t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~p 331 (437)
|+.|+|+|+||.+.||+||+||++||++|||||+.|||+ ++|++||||+.+++.|+ .+
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~---------------------~~ 62 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGG---------------------AS 62 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCc---------------------cc
Confidence 489999999999999999999999999999999999999 99999999998766553 35
Q ss_pred CCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhh
Q 013730 332 FYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVK 411 (437)
Q Consensus 332 iy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~ 411 (437)
+|+.+++++ ..+.++|+.+|+||||++ ++++++||||| ++++.++|||+|+|||+|++|||||++|+
T Consensus 63 ~~~~~~~~e----~~~~~~h~~~G~l~ma~~--~~~s~~sqFfI-------t~~~~p~Ld~~~tvFG~V~~G~dvl~~I~ 129 (146)
T cd01922 63 IYGKKFEDE----IHPELKHTGAGILSMANA--GPNTNGSQFFI-------TLAPTPWLDGKHTIFGRVSKGMKVIENMV 129 (146)
T ss_pred ccCCCcccc----cccCcCCCCCeEEEEeeC--CCCCCccEEEE-------EcCCCcccCCCCCEEEEEEcCHHHHHHHH
Confidence 566666654 345678899999999997 69999999999 55678999999999999999999999997
Q ss_pred c
Q 013730 412 V 412 (437)
Q Consensus 412 ~ 412 (437)
.
T Consensus 130 ~ 130 (146)
T cd01922 130 E 130 (146)
T ss_pred h
Confidence 5
No 7
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=4.3e-35 Score=269.23 Aligned_cols=145 Identities=26% Similarity=0.315 Sum_probs=114.9
Q ss_pred ceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCCC
Q 013730 253 VDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSP 331 (437)
Q Consensus 253 t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~p 331 (437)
|+.|+|+|+||.+.||+||+||++||+.+||||+.|||| ++|+|||||+.+++.|+. .++.. ...
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~--------~~~~~------~~~ 69 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGE--------SIYSQ------LYG 69 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCc--------ccccc------ccc
Confidence 489999999999999999999999999999999999999 999999999988776642 11100 000
Q ss_pred CCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhh
Q 013730 332 FYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVK 411 (437)
Q Consensus 332 iy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~ 411 (437)
..+..++++ ..+.++|+.+|+||||++ ++++++|||||++.+ ..++|||+|+|||+|++|||||++|+
T Consensus 70 ~~~~~~~~e----~~~~~~h~~~G~l~ma~~--~~~~~~SQFfIt~~~------~~~~Ldg~~tvFG~Vi~G~dvv~~I~ 137 (166)
T cd01921 70 RQARFFEPE----ILPLLKHSKKGTVSMVNA--GDNLNGSQFYITLGE------NLDYLDGKHTVFGQVVEGFDVLEKIN 137 (166)
T ss_pred ccCcccCcc----cCCccccCCceEEEEeEC--CCCCccceEEEEcCC------CCcccCCCccEEEEEEcCHHHHHHHH
Confidence 011122222 245778999999999998 688899999996532 37899999999999999999999997
Q ss_pred cCC-----------ceEEEEEec
Q 013730 412 VGD-----------VIQSIQVVS 423 (437)
Q Consensus 412 ~gD-----------~I~Sa~Vv~ 423 (437)
..+ +|++++|+.
T Consensus 138 ~~~~~~~~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 138 DAIVDDDGRPLKDIRIKHTHILD 160 (166)
T ss_pred cCCCCCCCCCCCCeEEEEEEEEC
Confidence 532 677777765
No 8
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=260.47 Aligned_cols=143 Identities=27% Similarity=0.498 Sum_probs=129.4
Q ss_pred eEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCc
Q 013730 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTR 317 (437)
Q Consensus 239 atV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~ 317 (437)
+.|++++ +.|.|++|||-.-||.||.||.+|+++|||||+.|||+ ++||||||||+|+|.|+
T Consensus 10 ~~V~LeT--------smG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGG--------- 72 (164)
T KOG0881|consen 10 PNVTLET--------SMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGG--------- 72 (164)
T ss_pred CeEEEee--------cccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCc---------
Confidence 5688877 89999999999999999999999999999999999999 99999999999999885
Q ss_pred CCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEE
Q 013730 318 TIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVF 397 (437)
Q Consensus 318 ~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVF 397 (437)
.++|+..|+|+ -++.|.|...|.|+||+. +||++|||||| |+++.++|||+|++|
T Consensus 73 ------------aSIYG~kF~DE----i~~dLkhTGAGILsMANa--GPnTNgSQFFi-------TLAPt~~LDGKHTIF 127 (164)
T KOG0881|consen 73 ------------ASIYGDKFEDE----IHSDLKHTGAGILSMANA--GPNTNGSQFFI-------TLAPTQWLDGKHTIF 127 (164)
T ss_pred ------------cccccchhhhh----hhhhhcccchhhhhhhcc--CCCCCCceEEE-------EecCccccCCcceee
Confidence 78999999997 567899999999999998 89999999999 778999999999999
Q ss_pred EEEecChHHHHhhhcC-----C-ceEEEEEec
Q 013730 398 GYVTENEGLLADVKVG-----D-VIQSIQVVS 423 (437)
Q Consensus 398 G~VveG~dVL~kI~~g-----D-~I~Sa~Vv~ 423 (437)
|+|..||+|+.++... | .|..++|+.
T Consensus 128 GRV~~Gm~vikr~G~v~Td~~DRPi~~~kIik 159 (164)
T KOG0881|consen 128 GRVCSGMEVIKRMGMVETDNSDRPIDEVKIIK 159 (164)
T ss_pred hhhhhhHHHHHhhcceecCCCCCCccceeeEe
Confidence 9999999999998542 2 555566553
No 9
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-34 Score=290.33 Aligned_cols=152 Identities=23% Similarity=0.342 Sum_probs=134.5
Q ss_pred CceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhc--C---------CCCCcEeeee-CCcEEEecCCC-C
Q 013730 237 GRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQR--H---------FYDGMEIQRA-DGFVVQTGDPE-G 303 (437)
Q Consensus 237 GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~--G---------fYdG~~f~RV-~gfVIQ~GDp~-g 303 (437)
++..++|.|.+... ..|+|+|+||.+.+|+||+||..||.. | .|+|+.|||| ++|||||||.+ |
T Consensus 7 ~~pr~ffDISI~ge---~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~g 83 (372)
T KOG0546|consen 7 TNPRVFFDISIGGE---PAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEG 83 (372)
T ss_pred CCceEEEEEEeCCc---ccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccC
Confidence 45678888888775 789999999999999999999999963 3 5999999999 99999999997 7
Q ss_pred CCCCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCC
Q 013730 304 PAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELT 383 (437)
Q Consensus 304 ~g~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt 383 (437)
+|+|+ ++|||.+|+|+.| .|.|+.+++|+||+. +|||||||||| |
T Consensus 84 nGtGG---------------------eSIYG~~FdDEnF-----~lKHdrpflLSMAN~--GpNTNgSQFFI-------T 128 (372)
T KOG0546|consen 84 NGTGG---------------------ESIYGEKFDDENF-----ELKHDRPFLLSMANR--GPNTNGSQFFI-------T 128 (372)
T ss_pred CCCCc---------------------ccccccccccccc-----eeccCcchhhhhhcC--CCCCCCcceEE-------e
Confidence 88885 7999999999987 789999999999999 79999999999 8
Q ss_pred CCCCCCCCCCccEEEEEecChHHHHhhhc------CCceEEEEEecCCC
Q 013730 384 PSNANILDGRYAVFGYVTENEGLLADVKV------GDVIQSIQVVSGLE 426 (437)
Q Consensus 384 ~~g~~~LDG~ytVFG~VveG~dVL~kI~~------gD~I~Sa~Vv~g~~ 426 (437)
..+.|||||+|+|||+||.|++|++.|+- +.+...|.|.+..+
T Consensus 129 T~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGe 177 (372)
T KOG0546|consen 129 TVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCGE 177 (372)
T ss_pred CCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEeccccc
Confidence 88999999999999999999999999964 22666666666544
No 10
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-34 Score=266.78 Aligned_cols=163 Identities=26% Similarity=0.409 Sum_probs=136.9
Q ss_pred cccccCCcCCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhc---CC-CCCcEeeee-CCcEEEecCC
Q 013730 227 EEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQR---HF-YDGMEIQRA-DGFVVQTGDP 301 (437)
Q Consensus 227 ~~y~~~P~l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~---Gf-YdG~~f~RV-~gfVIQ~GDp 301 (437)
..|+.-|+.+.+ |.|.+++.+. ..|+|+|.||+..+|+||+||..||.+ || |.|+.|||| ++|||||||.
T Consensus 30 ~~~~~~p~vT~k--V~fdi~~g~~---~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~ 104 (217)
T KOG0880|consen 30 KKYEPGPKVTHK--VYFDIEIGGE---PVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDF 104 (217)
T ss_pred cccCCCCcceeE--EEEEEEECCE---eccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCcc
Confidence 467777877665 4555555543 689999999999999999999999983 34 999999999 9999999998
Q ss_pred C-CCCCCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCC
Q 013730 302 E-GPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKES 380 (437)
Q Consensus 302 ~-g~g~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~ 380 (437)
+ |+|+|+ .++|+.+|+|++| .|.|+.+|+|+||+. +||+|||||||
T Consensus 105 t~g~gtGg---------------------~SIyG~~F~DENf-----~LkH~rpG~lSMAn~--GpDtNGsQFfI----- 151 (217)
T KOG0880|consen 105 TKGDGTGG---------------------KSIYGEKFPDENF-----KLKHDRPGRLSMANA--GPDTNGSQFFI----- 151 (217)
T ss_pred ccCCCCCC---------------------eEeecCCCCCccc-----eeecCCCceEeeecc--CCCCCCceEEE-----
Confidence 7 667774 5799999999887 788999999999998 89999999999
Q ss_pred CCCCCCCCCCCCCccEEEEEecChHHHHhhhc-----CC-ceEEEEEecCCCcCC
Q 013730 381 ELTPSNANILDGRYAVFGYVTENEGLLADVKV-----GD-VIQSIQVVSGLENLV 429 (437)
Q Consensus 381 ~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~~-----gD-~I~Sa~Vv~g~~~l~ 429 (437)
|....+||||+|+|||+|++|||+|.+|+. +| .++.++|....+-.+
T Consensus 152 --tT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~~ 204 (217)
T KOG0880|consen 152 --TTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGELPV 204 (217)
T ss_pred --EecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCcccc
Confidence 556677999999999999999999999964 23 677777776554433
No 11
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.4e-33 Score=260.59 Aligned_cols=149 Identities=31% Similarity=0.491 Sum_probs=123.5
Q ss_pred CcCCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCC
Q 013730 233 PLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDP 311 (437)
Q Consensus 233 P~l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp 311 (437)
|+.+|+ |.++| +.|+|+|+||.+.||+||+||++||+.|||||+.|||+ ++|++||||+.+++.|+
T Consensus 2 ~~~~~~--v~i~T--------s~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~--- 68 (171)
T cd01925 2 PPTTGK--VILKT--------TAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGG--- 68 (171)
T ss_pred CCcccE--EEEEE--------ccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccC---
Confidence 455555 55665 78999999999999999999999999999999999999 99999999998876653
Q ss_pred CCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCC
Q 013730 312 STEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILD 391 (437)
Q Consensus 312 ~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LD 391 (437)
.++|+..+.++ ..+.+.|+.+|+|+||++ ++++++||||| ++++.++||
T Consensus 69 ------------------~s~~g~~~~~E----~~~~~~~~~~G~l~ma~~--g~~s~~sqFfI-------t~~~~~~ld 117 (171)
T cd01925 69 ------------------ESIYGEPFKDE----FHSRLRFNRRGLVGMANA--GDDSNGSQFFF-------TLDKADELN 117 (171)
T ss_pred ------------------cccCCCccCcc----cccCcCCCCCcEEEECcC--CCCCcccEEEE-------EcCCCcccC
Confidence 34566666654 245677999999999998 68899999999 556789999
Q ss_pred CCccEEEEEe-cChHHHHhhhcCC-----------ceEEEEEecCC
Q 013730 392 GRYAVFGYVT-ENEGLLADVKVGD-----------VIQSIQVVSGL 425 (437)
Q Consensus 392 G~ytVFG~Vv-eG~dVL~kI~~gD-----------~I~Sa~Vv~g~ 425 (437)
|+|+|||+|+ ++++++++|...+ +|++++|..+-
T Consensus 118 g~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~~p 163 (171)
T cd01925 118 NKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLENP 163 (171)
T ss_pred CCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEcCC
Confidence 9999999999 4678888986532 68888887644
No 12
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=8.8e-33 Score=259.74 Aligned_cols=138 Identities=28% Similarity=0.405 Sum_probs=106.1
Q ss_pred CCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCC
Q 013730 236 KGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTE 314 (437)
Q Consensus 236 ~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~ 314 (437)
.++.+|.++| +.|+|+|+||++.||+||+||++||+.|||||+.|||+ ++|+|||||+.+...+. .
T Consensus 26 ~~~~~v~l~T--------~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~~-----~ 92 (190)
T PRK10903 26 KGDPHVLLTT--------SAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQK-----K 92 (190)
T ss_pred CCCcEEEEEe--------ccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCCC-----C
Confidence 4667788877 89999999999999999999999999999999999999 99999999987532211 0
Q ss_pred cCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCc
Q 013730 315 KTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRY 394 (437)
Q Consensus 315 ~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~y 394 (437)
. ..+++.+ .. ...+|.+|+|||||+ .++|+++|||||++.+......+ ++||+|
T Consensus 93 ~-------------~~~~~~e---------~~-~~l~~~~G~lama~~-~~~~sn~SQFfIt~~~~~~ld~~--~~dg~y 146 (190)
T PRK10903 93 P-------------NPPIKNE---------AD-NGLRNTRGTIAMART-ADKDSATSQFFINVADNAFLDHG--QRDFGY 146 (190)
T ss_pred C-------------CCcccCc---------cc-ccCcCCCcEEEeCCC-CCCCCcccEEEEECcCcccccCC--ccCCCc
Confidence 0 0122211 01 123688999999997 46899999999976553211111 244699
Q ss_pred cEEEEEecChHHHHhhhc
Q 013730 395 AVFGYVTENEGLLADVKV 412 (437)
Q Consensus 395 tVFG~VveG~dVL~kI~~ 412 (437)
+|||+|++|||||++|+.
T Consensus 147 tvFG~V~eG~dvl~~I~~ 164 (190)
T PRK10903 147 AVFGKVVKGMDVADKISQ 164 (190)
T ss_pred cEEEEEecCHHHHHHHHc
Confidence 999999999999999975
No 13
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.3e-32 Score=252.91 Aligned_cols=130 Identities=27% Similarity=0.350 Sum_probs=99.4
Q ss_pred eeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCCCC
Q 013730 254 DECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPF 332 (437)
Q Consensus 254 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~pi 332 (437)
+.|+|+|+||++.||+|++||++||+.|||||+.|||| ++|+|||||+... .+.. .
T Consensus 7 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~-~~~~----------------------~ 63 (164)
T PRK10791 7 NHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG-MKQK----------------------A 63 (164)
T ss_pred ccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCC-CCcC----------------------C
Confidence 89999999999999999999999999999999999999 9999999986421 1100 0
Q ss_pred CCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCC-CccEEEEEecChHHHHhhh
Q 013730 333 YGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDG-RYAVFGYVTENEGLLADVK 411 (437)
Q Consensus 333 y~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG-~ytVFG~VveG~dVL~kI~ 411 (437)
++.++.++ ..+.+ +|.+|+||||+. .+||+++|||||++.++..--.+.+++|| +|+|||+|+||||||++|+
T Consensus 64 ~~~~~~~e----~~~~~-~~~~G~lsma~~-~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~ 137 (164)
T PRK10791 64 TKEPIKNE----ANNGL-KNTRGTLAMART-QAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIK 137 (164)
T ss_pred CCCCcCCc----ccccc-cCCCcEEEECCC-CCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHH
Confidence 11111111 11223 468999999997 45999999999988764321122345666 8999999999999999996
Q ss_pred c
Q 013730 412 V 412 (437)
Q Consensus 412 ~ 412 (437)
.
T Consensus 138 ~ 138 (164)
T PRK10791 138 G 138 (164)
T ss_pred c
Confidence 3
No 14
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.9e-32 Score=255.88 Aligned_cols=151 Identities=25% Similarity=0.323 Sum_probs=120.3
Q ss_pred CCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh---------cCCCCCcEeeee-CCcEEEecCCC-C
Q 013730 235 LKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ---------RHFYDGMEIQRA-DGFVVQTGDPE-G 303 (437)
Q Consensus 235 l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~---------~GfYdG~~f~RV-~gfVIQ~GDp~-g 303 (437)
...+..|.|.+.+.+ ++.|+|+|+||.+.||+||+||++||+ .+||+|+.|||+ ++|+|||||+. +
T Consensus 12 ~~~~~~v~~di~i~~---~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~ 88 (183)
T PTZ00060 12 MSKRPKVFFDISIDN---APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNH 88 (183)
T ss_pred cCCCCEEEEEEEECC---EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCC
Confidence 334556777776654 378999999999999999999999996 579999999999 99999999986 3
Q ss_pred CCCCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCC
Q 013730 304 PAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELT 383 (437)
Q Consensus 304 ~g~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt 383 (437)
++.|+ .++|+..++++ ...++|+.+|+|+|++. ++|+++|||||+
T Consensus 89 ~g~~g---------------------~~~~g~~~~~e-----~~~~~h~~~G~lsma~~--g~~~~~sqFfIt------- 133 (183)
T PTZ00060 89 NGTGG---------------------ESIYGRKFTDE-----NFKLKHDQPGLLSMANA--GPNTNGSQFFIT------- 133 (183)
T ss_pred CCCCC---------------------CcccccccCCc-----cccccCCCCCEEEeccC--CCCCCcceEEEE-------
Confidence 44442 34555555544 23567888999999997 689999999995
Q ss_pred CCCCCCCCCCccEEEEEecChHHHHhhhcCC-----ceEEEEEec
Q 013730 384 PSNANILDGRYAVFGYVTENEGLLADVKVGD-----VIQSIQVVS 423 (437)
Q Consensus 384 ~~g~~~LDG~ytVFG~VveG~dVL~kI~~gD-----~I~Sa~Vv~ 423 (437)
+++.++|||+|+|||+|++|||||++|+..+ +++.++|.+
T Consensus 134 ~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v~I~~ 178 (183)
T PTZ00060 134 TVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTD 178 (183)
T ss_pred eCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCeEEEE
Confidence 4567899999999999999999999997532 445555544
No 15
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=1.9e-32 Score=256.58 Aligned_cols=158 Identities=22% Similarity=0.314 Sum_probs=124.8
Q ss_pred cccCCcCCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcC-----C---CCCcEeeee-CCcEEEec
Q 013730 229 YQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRH-----F---YDGMEIQRA-DGFVVQTG 299 (437)
Q Consensus 229 y~~~P~l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~G-----f---YdG~~f~RV-~gfVIQ~G 299 (437)
|...|.-.++..|.|++.+.+ .+.|+|+|+||.+.||+||+||+.||+.+ + |+++.|||| ++|+||||
T Consensus 9 ~~~~~~~~~~~~v~~di~~~~---~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgG 85 (186)
T PLN03149 9 WHLRPPNPKNPVVFFDVTIGG---IPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGG 85 (186)
T ss_pred eeecCCCCCCCEEEEEEeeCC---cccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcC
Confidence 334444444556778876654 37899999999999999999999999754 4 999999999 99999999
Q ss_pred CCC-CCCCCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeC
Q 013730 300 DPE-GPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLK 378 (437)
Q Consensus 300 Dp~-g~g~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~ 378 (437)
|+. +++.|+ .++|+..|+++. ..+.|+.+|+|+|+++ ++|+++|||||
T Consensus 86 d~~~~~g~g~---------------------~~~~g~~f~~e~-----~~~~h~~~G~lsma~~--g~~s~~sqFfI--- 134 (186)
T PLN03149 86 DFLKGDGTGC---------------------VSIYGSKFEDEN-----FIAKHTGPGLLSMANS--GPNTNGCQFFI--- 134 (186)
T ss_pred CcccCCCCCc---------------------ccccCCccCCcc-----cccccCCCCEEEEeeC--CCCCcccEEEE---
Confidence 975 555553 345666665543 2466889999999998 69999999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEe-cChHHHHhhhcCC------ceEEEEEecC
Q 013730 379 ESELTPSNANILDGRYAVFGYVT-ENEGLLADVKVGD------VIQSIQVVSG 424 (437)
Q Consensus 379 d~~lt~~g~~~LDG~ytVFG~Vv-eG~dVL~kI~~gD------~I~Sa~Vv~g 424 (437)
|+++.++|||+|+|||+|+ +|||||++|+... ++..++|.+.
T Consensus 135 ----t~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~c 183 (186)
T PLN03149 135 ----TCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISEC 183 (186)
T ss_pred ----ECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence 5567899999999999999 8999999996532 5566666553
No 16
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=3.8e-32 Score=249.14 Aligned_cols=135 Identities=27% Similarity=0.372 Sum_probs=111.9
Q ss_pred EEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh--cC------CCCCcEeeee-CCcEEEecCCC-CCCCCCcC
Q 013730 241 VDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RH------FYDGMEIQRA-DGFVVQTGDPE-GPAEGFID 310 (437)
Q Consensus 241 V~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~G------fYdG~~f~RV-~gfVIQ~GDp~-g~g~G~~d 310 (437)
|.|.+.+.+ ++.|+|+|+||.+.||+||+||++||+ ++ ||+|+.|||+ ++|+||+||+. +++.|+
T Consensus 3 v~~di~i~~---~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~-- 77 (164)
T cd01926 3 VFFDITIGG---EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG-- 77 (164)
T ss_pred EEEEEeECC---eeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCC--
Confidence 556665544 379999999999999999999999998 45 8999999999 99999999976 444442
Q ss_pred CCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCC
Q 013730 311 PSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANIL 390 (437)
Q Consensus 311 p~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~L 390 (437)
.++|+..++++. ..+.|+.+|+|+||+. ++++++||||| ++++.++|
T Consensus 78 -------------------~~~~g~~~~~e~-----~~~~h~~~G~lsma~~--~~~~~~sqFfI-------t~~~~~~L 124 (164)
T cd01926 78 -------------------KSIYGEKFPDEN-----FKLKHTGPGLLSMANA--GPNTNGSQFFI-------TTVKTPWL 124 (164)
T ss_pred -------------------CcccCCccCCCC-----ccccCCCccEEEeeEC--CCCCcccEEEE-------EeCCCCcc
Confidence 345665555432 3567889999999998 68999999999 55678899
Q ss_pred CCCccEEEEEecChHHHHhhhcC
Q 013730 391 DGRYAVFGYVTENEGLLADVKVG 413 (437)
Q Consensus 391 DG~ytVFG~VveG~dVL~kI~~g 413 (437)
||+|+|||+|++|||||++|+.-
T Consensus 125 d~~~tvFG~V~~G~dvl~~i~~~ 147 (164)
T cd01926 125 DGKHVVFGKVVEGMDVVKKIENV 147 (164)
T ss_pred CCcccEEEEEEEcHHHHHHHHcC
Confidence 99999999999999999999753
No 17
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.5e-32 Score=248.53 Aligned_cols=125 Identities=30% Similarity=0.329 Sum_probs=100.1
Q ss_pred ceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCCC
Q 013730 253 VDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSP 331 (437)
Q Consensus 253 t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~p 331 (437)
|+.|+|+|+||++.||+||+||+.||+.|||||+.|||| ++|||||||+...+.+.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~----------------------- 60 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQK----------------------- 60 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCcc-----------------------
Confidence 479999999999999999999999999999999999999 99999999987643221
Q ss_pred CCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCC-----CCccEEEEEecChHH
Q 013730 332 FYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILD-----GRYAVFGYVTENEGL 406 (437)
Q Consensus 332 iy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LD-----G~ytVFG~VveG~dV 406 (437)
.++..+.++ .....+|.+|+||||++ .++|+++|||||++ +..++|| |+|+|||+|+|||||
T Consensus 61 ~~~~~~~~e-----~~~~~~~~~G~v~ma~~-~~~~s~~SqFfI~~-------~~~~~ld~~~~~~~ytvFG~V~eG~dv 127 (155)
T cd01920 61 ETLKPIKNE-----AGNGLSNTRGTIAMART-NAPDSATSQFFINL-------KDNASLDYQNEQWGYTVFGEVTEGMDV 127 (155)
T ss_pred ccCCcccCc-----ccccccCCceEEEECCC-CCCCCccceEEEEC-------CCchhcCCcccCCCccEEEEEecCHHH
Confidence 001111111 11123588999999997 45899999999965 4456777 489999999999999
Q ss_pred HHhhhcC
Q 013730 407 LADVKVG 413 (437)
Q Consensus 407 L~kI~~g 413 (437)
|++|+..
T Consensus 128 l~~I~~~ 134 (155)
T cd01920 128 VDKIAGV 134 (155)
T ss_pred HHHHHcC
Confidence 9999754
No 18
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=7e-33 Score=278.74 Aligned_cols=140 Identities=24% Similarity=0.412 Sum_probs=128.8
Q ss_pred cCCcCCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCc
Q 013730 231 SMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFI 309 (437)
Q Consensus 231 ~~P~l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~ 309 (437)
..-+.+..+.|.+.+ +.|+|.|||+.+.+|.+|+||+.||++|||+|+.|||. .+||||||||+|+|.|+
T Consensus 270 ry~rvKkkgyvrl~T--------n~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GG- 340 (518)
T KOG0883|consen 270 RYTRVKKKGYVRLVT--------NHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGG- 340 (518)
T ss_pred hhccccccceEEEec--------cCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCC-
Confidence 345566677888876 89999999999999999999999999999999999999 99999999999999885
Q ss_pred CCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCC
Q 013730 310 DPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANI 389 (437)
Q Consensus 310 dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~ 389 (437)
+++||.+|.|+ ..+.|.|+.||+|+||++ +||++|||||| +....-+
T Consensus 341 --------------------eSiWgKpFkDE----f~~~l~H~gRGvlSMANs--GpnTNgSQFFI-------tyrsckh 387 (518)
T KOG0883|consen 341 --------------------ESIWGKPFKDE----FCSNLSHDGRGVLSMANS--GPNTNGSQFFI-------TYRSCKH 387 (518)
T ss_pred --------------------ccccCCccccc----cCCCCCcCCcceEeeccC--CCCCCCceEEE-------Eecchhh
Confidence 78999999987 678999999999999998 89999999999 5567899
Q ss_pred CCCCccEEEEEecChHHHHhhhc
Q 013730 390 LDGRYAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 390 LDG~ytVFG~VveG~dVL~kI~~ 412 (437)
||++||+||+||.|+++|.+|+.
T Consensus 388 Ld~KHTIFGrvVGGldtL~amEn 410 (518)
T KOG0883|consen 388 LDNKHTIFGRVVGGLDTLTAMEN 410 (518)
T ss_pred ccccceeeeeeeccHHHHHHHhc
Confidence 99999999999999999999965
No 19
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-32 Score=281.53 Aligned_cols=127 Identities=29% Similarity=0.427 Sum_probs=121.2
Q ss_pred ceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCCC
Q 013730 253 VDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSP 331 (437)
Q Consensus 253 t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~p 331 (437)
|++|+|.|.||++.+|+||+||-..|++|||||..|||+ +|||||+|||.|+|+|+ ++
T Consensus 411 tt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtgg---------------------es 469 (558)
T KOG0882|consen 411 TTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGG---------------------ES 469 (558)
T ss_pred ecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCC---------------------cc
Confidence 489999999999999999999999999999999999999 99999999999999996 78
Q ss_pred CCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhh
Q 013730 332 FYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVK 411 (437)
Q Consensus 332 iy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~ 411 (437)
+|+..|||+ .+|.|+|+++-+|+||++ +||+||||||| |.-..+||||+|||||+|+.||||++.|+
T Consensus 470 iwg~dfede----fh~~lrhdrpft~smana--g~ntngsqffi-------t~~~tpwld~khtvfgrv~~gm~vvqri~ 536 (558)
T KOG0882|consen 470 IWGKDFEDE----FHPNLRHDRPFTVSMANA--GPNTNGSQFFI-------TTVPTPWLDGKHTVFGRVTAGMDVVQRIE 536 (558)
T ss_pred cccccchhh----cCcccccCCCceEEeccc--CCCCCCceEEE-------EecCccccCCcceeEEEEecchhHHhHhh
Confidence 999999998 789999999999999999 79999999999 66788999999999999999999999997
Q ss_pred cC
Q 013730 412 VG 413 (437)
Q Consensus 412 ~g 413 (437)
.+
T Consensus 537 ~v 538 (558)
T KOG0882|consen 537 QV 538 (558)
T ss_pred hc
Confidence 65
No 20
>PTZ00221 cyclophilin; Provisional
Probab=99.97 E-value=5.5e-31 Score=256.51 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=112.5
Q ss_pred ceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcC-----------CCCCcEeeee-CC-cEEEecCCCCC
Q 013730 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRH-----------FYDGMEIQRA-DG-FVVQTGDPEGP 304 (437)
Q Consensus 238 ratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~G-----------fYdG~~f~RV-~g-fVIQ~GDp~g~ 304 (437)
+..|.|+|.+.+. ..|+|+|+||.+.||+||+||+.||+.. +|+|+.|||| ++ |+||+||+.+.
T Consensus 52 ~~rVfldisig~~---~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~ 128 (249)
T PTZ00221 52 SCRAFLDISIGDV---LAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSF 128 (249)
T ss_pred CCEEEEEEeeCCe---ecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCC
Confidence 4457777766653 7899999999999999999999999732 4999999999 75 89999998752
Q ss_pred CCCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCC
Q 013730 305 AEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTP 384 (437)
Q Consensus 305 g~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~ 384 (437)
+ ..+|+.+|.++.+ .++|+.+|+|+||+. ++|+++||||| |+
T Consensus 129 g------------------------~s~~G~~f~dE~~-----~~~h~~~G~LsMan~--GpntngSQFfI-------Tl 170 (249)
T PTZ00221 129 N------------------------VSSTGTPIADEGY-----RHRHTERGLLTMISE--GPHTSGSVFGI-------TL 170 (249)
T ss_pred C------------------------ccCCCCcccCccc-----cccCCCCCEEEeCcC--CCCCccceEEE-------EC
Confidence 2 2355666666543 567999999999998 79999999999 56
Q ss_pred CCCCCCCCCccEEEEEecChHHHHhhhc
Q 013730 385 SNANILDGRYAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 385 ~g~~~LDG~ytVFG~VveG~dVL~kI~~ 412 (437)
.+.++|||+|+|||+|++|||||++|+.
T Consensus 171 ~~~p~LDgk~vVFGrVveGmdVv~kIe~ 198 (249)
T PTZ00221 171 GPSPSLDFKQVVFGKAVDDLSLLEKLES 198 (249)
T ss_pred CCCCccCCCceEEEEEEeCHHHHHHHHc
Confidence 6789999999999999999999999974
No 21
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.3e-31 Score=230.33 Aligned_cols=125 Identities=31% Similarity=0.478 Sum_probs=116.1
Q ss_pred eeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCCCC
Q 013730 254 DECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPF 332 (437)
Q Consensus 254 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~pi 332 (437)
+.|+|.||||.+.+|+||+||+.||...||+|+.|||- +||++|+|||...|.|+ +++
T Consensus 8 ~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg---------------------~si 66 (161)
T KOG0884|consen 8 DVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGG---------------------NSI 66 (161)
T ss_pred ccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCC---------------------ccc
Confidence 68999999999999999999999999999999999998 99999999999888775 689
Q ss_pred CCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhhc
Q 013730 333 YGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 333 y~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~~ 412 (437)
||..|||+ ....|.|+.||.|+||++ +||+++||||| |.+..+|||-+|+|||+|++|+|.|++|++
T Consensus 67 wg~~fede----~~~~lkh~~rg~vsmann--gp~tn~sqffi-------ty~kq~hldmkytvfgkvidg~etldele~ 133 (161)
T KOG0884|consen 67 WGKKFEDE----YSEYLKHNVRGVVSMANN--GPNTNGSQFFI-------TYGKQPHLDMKYTVFGKVIDGLETLDELEK 133 (161)
T ss_pred cCCcchHH----HHHHHhhccceeEEcccC--CCCCCCceEEE-------EecCCCccceeEeeeeeeccchhhHHHHhh
Confidence 99999987 345688999999999998 89999999999 677889999999999999999999998865
No 22
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.97 E-value=2.3e-30 Score=230.77 Aligned_cols=127 Identities=34% Similarity=0.501 Sum_probs=105.1
Q ss_pred ceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCCC
Q 013730 253 VDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSP 331 (437)
Q Consensus 253 t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~p 331 (437)
|+.|+|+|+||.+.||+||+||++||+.+||||+.|||+ ++|++|+||+...+.++ ....+.+|.|
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~----~~~~~~~~~E--------- 70 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG----SGPGYKFPDE--------- 70 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC----CcCCCccCCc---------
Confidence 478999999999999999999999999999999999999 99999999998654331 0111233322
Q ss_pred CCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhh
Q 013730 332 FYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVK 411 (437)
Q Consensus 332 iy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~ 411 (437)
..+.+.|+.+|+|+|++. ++++++||||| ++++.++||++|+|||+|++|||+|++|.
T Consensus 71 -------------~~~~~~~~~~G~v~~~~~--~~~~~~sqF~I-------tl~~~~~ld~~~~vfG~V~~G~~vl~~I~ 128 (146)
T cd00317 71 -------------NFPLKYHHRRGTLSMANA--GPNTNGSQFFI-------TTAPTPHLDGKHTVFGKVVEGMDVVDKIE 128 (146)
T ss_pred -------------cccCcCcCCCcEEEEeeC--CCCCcccEEEE-------ECCCCcccCCCceEEEEEeCCHHHHHHHH
Confidence 223344789999999998 67799999999 55568899999999999999999999998
Q ss_pred cCC
Q 013730 412 VGD 414 (437)
Q Consensus 412 ~gD 414 (437)
.++
T Consensus 129 ~~~ 131 (146)
T cd00317 129 RGD 131 (146)
T ss_pred cCC
Confidence 654
No 23
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.2e-31 Score=262.54 Aligned_cols=152 Identities=28% Similarity=0.472 Sum_probs=132.3
Q ss_pred ccccCCcCCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCC
Q 013730 228 EYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAE 306 (437)
Q Consensus 228 ~y~~~P~l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~ 306 (437)
.|...|+.+|.+.+. | +.|+|.|||+...+|++|.||+.||..|||+|+.|||+ +||++|||||+|+|+
T Consensus 4 ~~~~EP~ttgkvil~--T--------T~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gt 73 (439)
T KOG0885|consen 4 SYNLEPPTTGKVILK--T--------TKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGT 73 (439)
T ss_pred ccccCCCccceEEEE--e--------ccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCC
Confidence 366678887765544 3 68999999999999999999999999999999999999 999999999999999
Q ss_pred CCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCC
Q 013730 307 GFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSN 386 (437)
Q Consensus 307 G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g 386 (437)
|+ +++|+.+|.++ .+|+|+|+.+|.|+||+. +.++||||||| |++.
T Consensus 74 Gg---------------------esiyg~~fadE----~h~Rlrf~rrGlvgmana--~~~~ngsqFff-------tl~~ 119 (439)
T KOG0885|consen 74 GG---------------------ESIYGRPFADE----FHPRLRFNRRGLVGMANA--GNDDNGSQFFF-------TLGD 119 (439)
T ss_pred Cc---------------------cccccccchhh----cCcceeeeccceeeeccc--CCCCCCceEEE-------EecC
Confidence 96 78999999987 789999999999999998 56899999999 6677
Q ss_pred CCCCCCCccEEEEEe-cChHHHHhhhcCC-----------ceEEEEEec
Q 013730 387 ANILDGRYAVFGYVT-ENEGLLADVKVGD-----------VIQSIQVVS 423 (437)
Q Consensus 387 ~~~LDG~ytVFG~Vv-eG~dVL~kI~~gD-----------~I~Sa~Vv~ 423 (437)
.++|++++++||+|+ +-...+-+|..++ +|.|++|+.
T Consensus 120 ~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~~ 168 (439)
T KOG0885|consen 120 TPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVLI 168 (439)
T ss_pred ChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEeec
Confidence 899999999999998 3455566665543 888888854
No 24
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.97 E-value=1e-29 Score=228.32 Aligned_cols=129 Identities=39% Similarity=0.537 Sum_probs=104.8
Q ss_pred eeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCC-CCcCCCCCcCcCCCccccccCCCCCC
Q 013730 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAE-GFIDPSTEKTRTIPLEIMVEGEKSPF 332 (437)
Q Consensus 255 ~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~-G~~dp~t~~~~~iPlEi~~~g~~~pi 332 (437)
.|+|+|+||++.||+||+||++||+.++|+|+.|||+ ++++||+||+.+++. +..+ . .....+|.|.
T Consensus 9 ~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~-~-~~~~~~~~E~--------- 77 (155)
T PF00160_consen 9 LGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGRED-S-TGGEPIPDEF--------- 77 (155)
T ss_dssp EEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEE-B-TTBSCBSSSG---------
T ss_pred ccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCccccc-c-cCcccccccc---------
Confidence 8999999999999999999999999999999999999 999999999887543 1111 0 0111244443
Q ss_pred CCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhhc
Q 013730 333 YGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 333 y~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~~ 412 (437)
.+.+.+|.+|+|+|++...++++++|||||+ +++.+++|++|+|||+|++||+||++|..
T Consensus 78 -------------~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~-------l~~~~~ld~~~~vfG~V~~G~~vl~~i~~ 137 (155)
T PF00160_consen 78 -------------NPSLLKHRRGLVSMARSGKDPNSNGSQFFIT-------LSDAPHLDGKYTVFGRVIEGMDVLDKIEA 137 (155)
T ss_dssp -------------BTTSSSSSTTEEEEEBSSSSTTEBSSEEEEE-------SSCGGGGTTTSEEEEEEEEHHHHHHHHHT
T ss_pred -------------ccccccccceeeeecccccCCCCCCceEEee-------ccCCCccccceeeeeEEehhHHHHHHHHC
Confidence 1123456999999999855689999999995 55667999999999999999999999988
Q ss_pred CC
Q 013730 413 GD 414 (437)
Q Consensus 413 gD 414 (437)
++
T Consensus 138 ~~ 139 (155)
T PF00160_consen 138 GP 139 (155)
T ss_dssp SB
T ss_pred CC
Confidence 64
No 25
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.3e-30 Score=226.93 Aligned_cols=137 Identities=25% Similarity=0.415 Sum_probs=125.3
Q ss_pred ceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCC--------CCCcEeeee-CCcEEEecCCC-CCCCC
Q 013730 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHF--------YDGMEIQRA-DGFVVQTGDPE-GPAEG 307 (437)
Q Consensus 238 ratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~Gf--------YdG~~f~RV-~gfVIQ~GDp~-g~g~G 307 (437)
+..|.|.+.+.+. ..|+|.|+||.+.+|+|++||.+.|...| |+++.|||| ++|||||||.. |+|+|
T Consensus 10 nPvVF~dv~igg~---~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG 86 (177)
T KOG0879|consen 10 NPVVFFDVAIGGR---PIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG 86 (177)
T ss_pred CCeEEEEEeeCCE---EcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCce
Confidence 5689999988774 88999999999999999999999998655 999999999 99999999975 67766
Q ss_pred CcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCC
Q 013730 308 FIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNA 387 (437)
Q Consensus 308 ~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~ 387 (437)
- .++|+.+|.|++| .|.|+.+|.|+||++ +++++|.|||| |.+..
T Consensus 87 ~---------------------~sIy~~~F~DENF-----tlkH~~PGlLSMANs--G~~tNGCQFFI-------Tcakc 131 (177)
T KOG0879|consen 87 V---------------------ASIYGSTFPDENF-----TLKHDGPGLLSMANS--GKDTNGCQFFI-------TCAKC 131 (177)
T ss_pred E---------------------EEEcCCCCCCcce-----eeecCCCceeecccc--CCCCCCceEEE-------Eeccc
Confidence 3 6899999999877 889999999999998 89999999999 78899
Q ss_pred CCCCCCccEEEEEecChHHHHhhhc
Q 013730 388 NILDGRYAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 388 ~~LDG~ytVFG~VveG~dVL~kI~~ 412 (437)
.+|||+|+|||+|++|+.++++|+.
T Consensus 132 dfLD~KHVVFGrvldGlli~rkIEn 156 (177)
T KOG0879|consen 132 DFLDGKHVVFGRVLDGLLIMRKIEN 156 (177)
T ss_pred ccccCceEEEeeeehhhhhhhhhhc
Confidence 9999999999999999999999975
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.5e-29 Score=236.66 Aligned_cols=151 Identities=28% Similarity=0.435 Sum_probs=131.3
Q ss_pred ceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh--cCC-CCCcEeeee-CCcEEEecCCC-CCCCCCcCCC
Q 013730 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RHF-YDGMEIQRA-DGFVVQTGDPE-GPAEGFIDPS 312 (437)
Q Consensus 238 ratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YdG~~f~RV-~gfVIQ~GDp~-g~g~G~~dp~ 312 (437)
.+.|.+.+++... ..|+|++.|+.++.|.|++||..||. .|| |+|+.|||+ |.||+||||.+ ++|+|+
T Consensus 136 ~pqv~~~ikig~~---~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtgg---- 208 (298)
T KOG0111|consen 136 NPQVYHDIKIGED---RAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGG---- 208 (298)
T ss_pred ChHhhhheeeccc---ccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCC----
Confidence 3457777766654 78999999999999999999999995 678 999999999 99999999987 677775
Q ss_pred CCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCC
Q 013730 313 TEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDG 392 (437)
Q Consensus 313 t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG 392 (437)
.++|+..|.|++| .|.|..+|+|+||++ ++|++||||||+. ....||||
T Consensus 209 -----------------ksiygkkfddenf-----~lkht~pgtlsmans--gantngsqffict-------~ktdwldg 257 (298)
T KOG0111|consen 209 -----------------KSIYGKKFDDENF-----TLKHTMPGTLSMANS--GANTNGSQFFICT-------EKTDWLDG 257 (298)
T ss_pred -----------------cccccccccccce-----eeecCCCceeecccc--CCCCCCceEEEEe-------cccccccC
Confidence 6899999999877 789999999999998 8999999999954 45689999
Q ss_pred CccEEEEEecChHHHHhhhc-----CCceEEEEEecCCC
Q 013730 393 RYAVFGYVTENEGLLADVKV-----GDVIQSIQVVSGLE 426 (437)
Q Consensus 393 ~ytVFG~VveG~dVL~kI~~-----gD~I~Sa~Vv~g~~ 426 (437)
+|+|||.|++||+|+++++. |-.-..++|++..|
T Consensus 258 khvvfghv~eg~~vvrq~e~qgsksgkp~qkv~i~~cge 296 (298)
T KOG0111|consen 258 KHVVFGHVVEGMNVVRQVEQQGSKSGKPQQKVKIVECGE 296 (298)
T ss_pred ceeEEeeecchHHHHHHHHhccCCCCCcceEEEEEeccc
Confidence 99999999999999999964 45667777777543
No 27
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-27 Score=236.57 Aligned_cols=142 Identities=29% Similarity=0.412 Sum_probs=121.2
Q ss_pred eeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCCCC
Q 013730 254 DECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPF 332 (437)
Q Consensus 254 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~pi 332 (437)
+.|+|+|.||-+..|.||-||++||+..||+.+.||.| .+|++|+|||+|+|.|+ +++
T Consensus 8 tlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG---------------------~si 66 (479)
T KOG0415|consen 8 TLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGG---------------------ESI 66 (479)
T ss_pred ecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCc---------------------cee
Confidence 78999999999999999999999999999999999999 99999999999999886 455
Q ss_pred CCCchh-hcccc--ccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHh
Q 013730 333 YGATLE-ELGLY--KAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLAD 409 (437)
Q Consensus 333 y~~t~e-d~G~~--~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~k 409 (437)
|+.-.- +..|| +..|.+.|+..|+|+|++. +.|-+||||||+|.| ++..|||+|+|||+|+||+|+|.+
T Consensus 67 ~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~--g~n~~gSQF~iTlge------nLdyLDg~htvfGqV~EG~dtl~k 138 (479)
T KOG0415|consen 67 YGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSA--GENLNGSQFFITLGE------NLDYLDGKHTVFGQVAEGFDTLTK 138 (479)
T ss_pred eeecccccchhhhhhhcccccccccceEEeecC--CcccccceEEEEccc------cccccccccceeeehhhhHHHHHH
Confidence 554442 22343 2579999999999999998 788999999999877 567899999999999999999999
Q ss_pred hhc--CC---------ceEEEEEecC
Q 013730 410 VKV--GD---------VIQSIQVVSG 424 (437)
Q Consensus 410 I~~--gD---------~I~Sa~Vv~g 424 (437)
|.. .| +|..-.|+++
T Consensus 139 iNea~vD~~~rPykdIRI~HTiiLdD 164 (479)
T KOG0415|consen 139 INEAIVDPKNRPYKDIRIKHTIILDD 164 (479)
T ss_pred HHHHhcCCCCCcccceeeeeeEEecC
Confidence 964 22 6666555543
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.1e-22 Score=182.50 Aligned_cols=136 Identities=27% Similarity=0.396 Sum_probs=114.8
Q ss_pred eEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh--cCC-CCCcEeee-e---CCcEEEecCCC-CCCCCCcC
Q 013730 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RHF-YDGMEIQR-A---DGFVVQTGDPE-GPAEGFID 310 (437)
Q Consensus 239 atV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YdG~~f~R-V---~gfVIQ~GDp~-g~g~G~~d 310 (437)
.+|.+.+.+... ..|++.++|+.+..|+|++||..||. .+| |.+..||| + ++|++||||.+ ++++|+
T Consensus 4 ~~vf~d~~~~~~---p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtgg-- 78 (167)
T KOG0865|consen 4 PTVFFDIAIDGE---PLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGG-- 78 (167)
T ss_pred CeeeeeeeecCc---cccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccc--
Confidence 456666655543 78999999999999999999999985 444 99999999 3 58999999986 466653
Q ss_pred CCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCC
Q 013730 311 PSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANIL 390 (437)
Q Consensus 311 p~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~L 390 (437)
.++|++.|+|++| .++|..+|.|+||+. +||+++|||||+.. ...||
T Consensus 79 -------------------kSiy~ekF~DenF-----ilkhtgpGiLSmaNa--gpntngsqfficta-------ktewL 125 (167)
T KOG0865|consen 79 -------------------KSIYGEKFDDENF-----ILKHTGPGILSMANA--GPNTNGSQFFICTA-------KTEWL 125 (167)
T ss_pred -------------------eEecccccCCcCc-----EEecCCCCeeehhhc--CCCccccEEEEEcc-------ccccc
Confidence 6789999999877 667777899999998 89999999999743 34889
Q ss_pred CCCccEEEEEecChHHHHhhhc
Q 013730 391 DGRYAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 391 DG~ytVFG~VveG~dVL~kI~~ 412 (437)
||+++|||+|.+||++++.++.
T Consensus 126 dgkhVVfGkv~eGm~iv~a~e~ 147 (167)
T KOG0865|consen 126 DGKHVVFGKVKEGMDIVEAMER 147 (167)
T ss_pred cCceeEcCceEcccchhhhhhc
Confidence 9999999999999999999965
No 29
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=96.78 E-value=0.0095 Score=54.46 Aligned_cols=93 Identities=6% Similarity=0.149 Sum_probs=82.1
Q ss_pred hhHHHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 013730 116 KAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRD 195 (437)
Q Consensus 116 ~~~r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~~d 195 (437)
.+|.+.+++|.++...+-. |.|.-+...++.-+.-|..+=..|..+.|+++|+++.++..+|.+.|++|-.++..||
T Consensus 43 ~~i~~~~~r~~eLk~lI~k---k~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~AA~~kd 119 (142)
T TIGR03042 43 EGIEAAKDRLPELASLVAK---EDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEAARLQD 119 (142)
T ss_pred HHHHHHHHhhHHHHHHHhh---cchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777778888888876 8999999999999999988888999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhc
Q 013730 196 RDAVAPKQKELLNYVG 211 (437)
Q Consensus 196 ~~~~~~~~~~~L~~v~ 211 (437)
........+++...+.
T Consensus 120 ~~~a~k~Y~~av~~~d 135 (142)
T TIGR03042 120 GPQAQKAYQKAAADFD 135 (142)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988888887766554
No 30
>PLN02956 PSII-Q subunit
Probab=96.66 E-value=0.022 Score=54.08 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=77.5
Q ss_pred HHHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHhcCcc
Q 013730 118 VREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRD 197 (437)
Q Consensus 118 ~r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~~ 197 (437)
+|+=-+.|-.+...+-. |.|--+...++.-+.-|..+=..|+.++|+++|+.+.+|..+|.+.|++|-.++..+|..
T Consensus 89 ~k~~A~~l~~LK~LI~k---~~W~yvrn~LRgp~s~Lr~DL~~Ii~slpp~Drk~a~~La~~LFd~l~~LD~AAR~kd~~ 165 (185)
T PLN02956 89 VRGHAENLLRVKALIES---ESWKEAQKALRRSASNLKQDLYAIIQAKPGKDRPQLRRLYSDLFNSVTKLDYAARDKDET 165 (185)
T ss_pred HHHHHHHHHHHHHHhhh---ccHHHHHHHHHccHHHHHHHHHHHHHhcCHhHhHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34444444455555554 889999999999999998888899999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcc
Q 013730 198 AVAPKQKELLNYVGG 212 (437)
Q Consensus 198 ~~~~~~~~~L~~v~~ 212 (437)
......++++..+.+
T Consensus 166 ~a~k~Y~~tva~lD~ 180 (185)
T PLN02956 166 RVWEYYENIVASLDD 180 (185)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888888766654
No 31
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=96.63 E-value=0.00082 Score=64.63 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHHhHhhCcCCCccchhhhc--cCCCCCccccccCCCCCCCHHHH---Hhhc--CCC---CC--hhHHHH
Q 013730 54 KLKECAISIALAAGLITGVPAIADANINAN--INMAMPDVSVLISGPPIKDPGAL---LRYA--LPI---DN--KAVREV 121 (437)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~g~~~~~~~a~---LR~a--lP~---~n--~~~r~i 121 (437)
.=++.+++..+|++++++..+......+.+ ..+++|....++.-+.+.-.+.+ |+.- +|- .. .-||+-
T Consensus 29 ~~RRa~l~~l~a~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~g~~~~~~aRd~~l~lk~rf~~~~l~~~ea~~Rik~s 108 (202)
T PF05757_consen 29 TSRRAVLGSLLAAALAGGSFAQAAAAAAWAIKVGLPPPPSGNLPGTNNSDGARDFDLPLKERFYIQPLSPEEAAARIKES 108 (202)
T ss_dssp ----------------------------S-EE---------------------------TT--EE----CCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhcccccccchhhhccCCCCCCCCCCCCccccccccccccchhhceecCCCCHHHHHHHHHHH
Confidence 345666675555555555444332222222 33444444444544444444444 3322 211 11 235555
Q ss_pred hhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHhcCccchhH
Q 013730 122 QKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAP 201 (437)
Q Consensus 122 q~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~~~~~~ 201 (437)
.+.|.++-+.+-. |.|.-+..++|.-+..|...=+.|+.+.|+++|+....+.++|=..+++|..++..||...+..
T Consensus 109 a~~L~~lk~lIdk---~sW~~v~~~LRlka~~Lr~DL~~liss~p~~~kk~l~~La~~lf~~ie~LD~Aar~K~~~~a~~ 185 (202)
T PF05757_consen 109 AKRLLSLKELIDK---KSWPYVRNYLRLKAGYLRYDLNTLISSKPKDEKKALTDLANKLFDNIEELDYAARSKDVPEAEK 185 (202)
T ss_dssp HHHHCCCHHHHHT---T-HHHHHHHHHCCCCCHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhh---ccHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 5667677777765 8999999999988888888888999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhccc
Q 013730 202 KQKELLNYVGGV 213 (437)
Q Consensus 202 ~~~~~L~~v~~l 213 (437)
...+++..+.++
T Consensus 186 ~Y~~t~~~Ldev 197 (202)
T PF05757_consen 186 YYADTVKALDEV 197 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887766543
No 32
>PLN02729 PSII-Q subunit
Probab=96.40 E-value=0.039 Score=53.29 Aligned_cols=158 Identities=15% Similarity=0.182 Sum_probs=109.7
Q ss_pred CcchhhHHHHHHHHHHhHhhCcCCCccchhhhc----cCCCCCccccccC-CCCCCCHHHHHhhcCCCCC----hhHHHH
Q 013730 51 PFQKLKECAISIALAAGLITGVPAIADANINAN----INMAMPDVSVLIS-GPPIKDPGALLRYALPIDN----KAVREV 121 (437)
Q Consensus 51 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~-g~~~~~~~a~LR~alP~~n----~~~r~i 121 (437)
....=++.++|++ |++|+.+..+- ...|.+ ..+++|..+.+-+ -|.-.-.+..|+.-.=+.. ..+.+|
T Consensus 47 ~~~~~rr~~lgl~-a~~l~~~s~~~--~~~A~~~~i~~~~P~P~pst~n~~~~e~~gtRsfLKerfy~~~l~p~~aa~Ri 123 (220)
T PLN02729 47 SFQTTRRLALGLA-SIALIGNSGNG--VSLAEDNGFWLDGPLPVPSVDNKIVNEKTGTRSFLKKGIYMADIGTKGRMYRV 123 (220)
T ss_pred hhhhhHHHHHHHH-HHHHhcchhhh--HHHhcccCceeCCCCCCCccccccccccchHHHHHHhcccCCCCCHHHHHHHH
Confidence 4455678889987 77777766633 333332 2344343333322 1122334556765432211 333444
Q ss_pred hhhhhh---hhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHhcCccc
Q 013730 122 QKPLED---ITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDA 198 (437)
Q Consensus 122 q~~lE~---~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~~~ 198 (437)
.+.-++ +-+.+- .|.|.-|-+++|..+..|..+=..|+++.|.++|+.-.+|.++|=..+++|..++..|+...
T Consensus 124 K~sA~dLl~vKdLId---~~sW~yVq~~LRLKAsyL~yDL~tvIsskP~~eKk~L~~LankLFdn~~eLD~AaR~Ks~~e 200 (220)
T PLN02729 124 KKYAFDLLALEDLIG---PDTLNYVRKYLRLKSTFMYYDFDKLISAAPVDDKQPLTDLANRLFDNFEKLEDASKRKNLSE 200 (220)
T ss_pred HHHHHHHHHHHHhhC---cchHHHHHHHHHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHHHhhHHHHHHHHhCCChHH
Confidence 443333 334553 38999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcccc
Q 013730 199 VAPKQKELLNYVGGVE 214 (437)
Q Consensus 199 ~~~~~~~~L~~v~~le 214 (437)
+.....+++..+.++=
T Consensus 201 ae~yY~~Tv~aLdeVl 216 (220)
T PLN02729 201 TESSYKDTKTLLQEVM 216 (220)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988888887777543
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.41 E-value=0.059 Score=57.92 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=73.9
Q ss_pred eEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCc
Q 013730 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTR 317 (437)
Q Consensus 239 atV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~ 317 (437)
.|-++.+.+.++-+ -.-.+.++|+. .||.++++|+.+.+.|.+. ..+. ..|+--+ . -+..
T Consensus 185 ~TtDl~~~LEdG~~-IfTy~evE~~~-~~p~s~EH~la~~~~G~~~---Vd~~tsTfi~d~---~-----------L~g~ 245 (503)
T TIGR03268 185 TTTDLSTVLEDGDR-IFTYVEVELDP-NAPVSVEHFLALMEDGTFR---VDYRTSTFISDD---S-----------LRGL 245 (503)
T ss_pred EEecCCccccCCCE-EEEEEEEEEcC-CCChhHHHHHHHHhCCeEE---EeeeecceEecc---c-----------ccCc
Confidence 44555555554311 23457777766 8999999999999999642 1122 2232110 0 0012
Q ss_pred CCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEE
Q 013730 318 TIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVF 397 (437)
Q Consensus 318 ~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVF 397 (437)
.+|-|- + ..-.+|+|.+-+. +. +.--.||--.|....+ .|+|+
T Consensus 246 ~~p~En------------------~-------~~R~rGtVTVRn~--G~--G~G~VYIYredr~ss~--------sHtvV 288 (503)
T TIGR03268 246 DKPEEN------------------I-------EKRRRGAVTVRNS--GV--GEGRVYIYREDRPSSL--------SHNVV 288 (503)
T ss_pred cCCccc------------------c-------CcccceeEEEEee--cc--CceeEEEEcCCCCCCc--------cccee
Confidence 222221 0 1134899998876 22 2345788544432222 48999
Q ss_pred EEEecChHHHHhhhcCCceE
Q 013730 398 GYVTENEGLLADVKVGDVIQ 417 (437)
Q Consensus 398 G~VveG~dVL~kI~~gD~I~ 417 (437)
|+|+.|||+++--+.||+|.
T Consensus 289 G~V~~GiELid~a~~Gd~it 308 (503)
T TIGR03268 289 GHVTRGIELIDIAQEGDRLS 308 (503)
T ss_pred EEEecceeeeecccCCCEEE
Confidence 99999999999999999764
No 34
>PRK00969 hypothetical protein; Provisional
Probab=95.36 E-value=0.056 Score=58.18 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=75.7
Q ss_pred eEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCc
Q 013730 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTR 317 (437)
Q Consensus 239 atV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~ 317 (437)
.|-++.+.+.++-+ -.-.+.++++. .||..+++|+.+.+.|.+. ..+. ..|+--+ . -+..
T Consensus 188 ~TtDl~~~LEdG~~-IfTy~eve~~~-~~p~s~EH~la~~~~G~f~---Vd~~tstfI~d~---~-----------L~g~ 248 (508)
T PRK00969 188 VTTDLSTVLEDGMK-IFTYVEVELDP-GAPKSVEHFLALLEDGTFE---VDFETSTFIADD---R-----------LQGL 248 (508)
T ss_pred EEecCCccccCCCE-EEEEEEEEEcC-CCCchHHHHHHHHhCCeEE---EeeeecceEeec---c-----------ccCc
Confidence 45555555555421 23456777776 8999999999999999642 1122 2232110 0 0011
Q ss_pred CCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEE
Q 013730 318 TIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVF 397 (437)
Q Consensus 318 ~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVF 397 (437)
.+|.|- + . .-.+|+|.+-+. +. +.--.||--.|....+ .|+|+
T Consensus 249 ~~p~En------------------~---~----~R~~GtVTVRt~--G~--g~G~vYIyredr~ss~--------sHtvV 291 (508)
T PRK00969 249 KIPEEN------------------F---E----PRRRGTVTVRTA--GV--GVGKVYIYREDRPSSL--------SHTVV 291 (508)
T ss_pred cCCccc------------------c---C----ccccceEEEEee--cc--CceeEEEECCCCCCCc--------cceeE
Confidence 222121 0 1 134899988776 22 3345788555532222 48999
Q ss_pred EEEecChHHHHhhhcCCceEEEEE
Q 013730 398 GYVTENEGLLADVKVGDVIQSIQV 421 (437)
Q Consensus 398 G~VveG~dVL~kI~~gD~I~Sa~V 421 (437)
|+|+.|||+++--+.||+|. ++.
T Consensus 292 G~V~~GiELi~~a~~Gd~it-v~t 314 (508)
T PRK00969 292 GRVTHGIELIDFAKEGDRIT-VKT 314 (508)
T ss_pred EEEecceeeeecccCCCEEE-EEe
Confidence 99999999999999999775 443
No 35
>PRK00969 hypothetical protein; Provisional
Probab=94.27 E-value=0.56 Score=50.78 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=40.2
Q ss_pred CeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhhcCCceEEEEEec
Q 013730 354 FGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVKVGDVIQSIQVVS 423 (437)
Q Consensus 354 ~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~~gD~I~Sa~Vv~ 423 (437)
++-|.+.-++.+| ..+.+-|...+-.... |.+. | -+||+|+.|..+|++|..||.|.|++=+-
T Consensus 116 r~DV~lg~~G~dp--~~thLIfsk~~h~a~Y-G~p~-~---gv~grVi~Gk~vl~~L~~~D~I~sIEPVi 178 (508)
T PRK00969 116 RWDVVLSLSGFDP--SETHLIFSKRDHSADY-GAPN-D---GVIGRVVGGKRVLDRLTDGDRIISIEPVI 178 (508)
T ss_pred cccEEEEccCCCC--CCceEEEEecchhhhh-CCCC-C---CceEEEccchhhHhhccCCCeEEEEeeeE
Confidence 5667776663333 2344444333312111 2231 2 79999999999999999999999987543
No 36
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
Probab=94.16 E-value=0.14 Score=48.48 Aligned_cols=94 Identities=19% Similarity=0.163 Sum_probs=80.7
Q ss_pred HHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHhcCccc
Q 013730 119 REVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDA 198 (437)
Q Consensus 119 r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~~~ 198 (437)
|+=-+.|=.+-+.|-. |.|.-|-.++|..+.-|..+=..|+.+.|.++|..-.++.++|=+.+++|.-++..||..+
T Consensus 94 K~sA~dLl~vK~LId~---~aW~YVq~~LRlkasyLryDL~tiIsskP~~eK~~L~~LankLFdnvt~LDyAAR~K~~~e 170 (190)
T PLN02999 94 KQTAEGLRDMREMLDH---MSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDYYVRTPKVYE 170 (190)
T ss_pred HHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhHHHHHHHHHHhhhHHHHHHHHhcCChHH
Confidence 4434445555566655 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhccccc
Q 013730 199 VAPKQKELLNYVGGVEE 215 (437)
Q Consensus 199 ~~~~~~~~L~~v~~le~ 215 (437)
+.....+++..+.++=+
T Consensus 171 ae~yY~~Tv~slddVl~ 187 (190)
T PLN02999 171 SYLYYEKTLKSIDNVVE 187 (190)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888888776533
No 37
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=92.59 E-value=1.3 Score=48.05 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=41.6
Q ss_pred CeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhhcCCceEEEEEecC
Q 013730 354 FGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVKVGDVIQSIQVVSG 424 (437)
Q Consensus 354 ~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~~gD~I~Sa~Vv~g 424 (437)
++-|.+.-++. +...+.+-|...+-..-. |.+. .--+||+|+.|..+|++|..||.|.|++=+-.
T Consensus 112 r~DV~lg~~G~--d~~~thLIfsk~~h~~~Y-G~p~---~~gvigrvi~Gk~vl~~L~~~D~I~sIEPvie 176 (503)
T TIGR03268 112 RWDVILSLSGF--DPDETHIIFSKKRHAAEY-GVPD---ENGIIARVVGGKRVIDRLSDGDQIISIEPVIE 176 (503)
T ss_pred cccEEEEccCC--CCCCceEEEEecchhhhh-CCCC---CCCEEEEEccchhhHhhccCCCeEEEEeeeee
Confidence 56677776633 333455544443311111 2221 34799999999999999999999999876543
No 38
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=0.17 Score=54.03 Aligned_cols=130 Identities=12% Similarity=0.093 Sum_probs=83.6
Q ss_pred eeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCC--CCCCCCcCCCCCcCcCCCccccccCCCCC
Q 013730 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPE--GPAEGFIDPSTEKTRTIPLEIMVEGEKSP 331 (437)
Q Consensus 255 ~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~--g~g~G~~dp~t~~~~~iPlEi~~~g~~~p 331 (437)
..-|.|+++..-.|.-++-|.+.|+.+++++..|.|| ..+++|.||.. .+..|-+.- |+-+.++...
T Consensus 111 ~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEy-----Ws~e~~~qfP----- 180 (558)
T KOG0882|consen 111 ISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEY-----WSAEGPFQFP----- 180 (558)
T ss_pred eeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEe-----ecCCCcccCc-----
Confidence 3489999999999999999999999999999999999 89999999864 333343322 2211111000
Q ss_pred CCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhh
Q 013730 332 FYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVK 411 (437)
Q Consensus 332 iy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~ 411 (437)
--. ..-.+. |.--.+..... ...-.+-+|++ +....+-+.-+-.|||.+..|.++++.|.
T Consensus 181 r~~----------l~~~~K-~eTdLy~f~K~--Kt~pts~Efsp-------~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 181 RTN----------LNFELK-HETDLYGFPKA--KTEPTSFEFSP-------DGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccc----------cccccc-ccchhhccccc--ccCccceEEcc-------ccCcccccCcccEEEEEEeccchhhhhhh
Confidence 000 000111 12222333333 22334566666 44445556678899999999999999997
Q ss_pred cCC
Q 013730 412 VGD 414 (437)
Q Consensus 412 ~gD 414 (437)
..+
T Consensus 241 E~~ 243 (558)
T KOG0882|consen 241 EVL 243 (558)
T ss_pred ccc
Confidence 654
No 39
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=0.56 Score=49.50 Aligned_cols=104 Identities=22% Similarity=0.349 Sum_probs=66.1
Q ss_pred eeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee----CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCC
Q 013730 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA----DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKS 330 (437)
Q Consensus 255 ~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV----~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~ 330 (437)
.-.+.++|.+ ++|..|++|+.|.+.|-+ |+ ..|+- |- +-+...+|
T Consensus 202 fTy~eve~s~-nsP~saEH~lalmedG~l------ri~~~tntfis---~~-----------~lq~~~~~---------- 250 (512)
T COG4070 202 FTYFEVELSR-NSPKSAEHFLALMEDGTL------RIDVTTNTFIS---DD-----------TLQEEKVP---------- 250 (512)
T ss_pred EEEEEEEeCC-CCchhHHHHHHHhhcceE------EEEEeccceee---cc-----------ccccccCC----------
Confidence 4567888887 899999999999998842 22 22321 00 00011112
Q ss_pred CCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhh
Q 013730 331 PFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADV 410 (437)
Q Consensus 331 piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI 410 (437)
++++ . .-.+|.+..-+. +- +.-.-||.-.|+..++ .|+|.|+|++|||+++--
T Consensus 251 --------~en~-----d--~RerG~iTvRn~--Gv--geGrvYIyRedR~ss~--------sHnvVGrV~eGiELid~a 303 (512)
T COG4070 251 --------EENF-----D--LRERGAITVRNV--GV--GEGRVYIYREDRPSSL--------SHNVVGRVIEGIELIDLA 303 (512)
T ss_pred --------hhhh-----h--hhhcceEEEEee--ec--ccceEEEEecCCCCcc--------ccceeeeeecceEEEEec
Confidence 1111 1 235899988776 22 3445777655543333 389999999999999999
Q ss_pred hcCCce
Q 013730 411 KVGDVI 416 (437)
Q Consensus 411 ~~gD~I 416 (437)
..||++
T Consensus 304 ~eGd~l 309 (512)
T COG4070 304 EEGDKL 309 (512)
T ss_pred ccCcEE
Confidence 999865
No 40
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=86.00 E-value=2.6 Score=38.95 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=26.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee---CCcEEEecC
Q 013730 256 CVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA---DGFVVQTGD 300 (437)
Q Consensus 256 G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV---~gfVIQ~GD 300 (437)
-.++.+|..+.||.||+.|.+.- =|.+..+|-. +..++.-|+
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L---P~~~~~~HarwSG~ei~~~l~~ 52 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL---PLKGKVIHARWSGEEIWIPLPD 52 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH-----EEEE-EE-SSSSSEEEEEEE-
T ss_pred eEEEEEEcccCChHHHHHHHHhC---CCCCcEEEEEEECcEEEEECCC
Confidence 47899999999999999999987 3444455533 223555555
No 41
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=71.16 E-value=7.6 Score=34.33 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=35.0
Q ss_pred CCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhhcCCceE
Q 013730 353 AFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVKVGDVIQ 417 (437)
Q Consensus 353 ~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~~gD~I~ 417 (437)
..|-|+.-.. +.-|-|++++.....++....-+...++|+|++|.+.|.++..|+.|+
T Consensus 61 ~~GDi~Yw~p-------g~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~~~~V~ 118 (120)
T PF04126_consen 61 EAGDIAYWPP-------GGALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKGGEKVR 118 (120)
T ss_dssp -TTEEEEECC-------CTEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--TTEEEE
T ss_pred cCceEEEeCC-------CCEEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCCCCeEE
Confidence 3788887654 233777776643333344456677899999999999999999887553
No 42
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=67.99 E-value=22 Score=38.02 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhHh
Q 013730 257 VFRIVLDGYNAPVTAGNFVDLVQ 279 (437)
Q Consensus 257 ~I~IeLd~~~AP~Ta~NFl~Lv~ 279 (437)
-|.|+||.+.||.++..|.++..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 58999999999999999999875
No 43
>PF15368 BioT2: Spermatogenesis family BioT2
Probab=47.77 E-value=44 Score=31.43 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=17.0
Q ss_pred CCHHHHHhhcCCCCChhHHHHhh
Q 013730 101 KDPGALLRYALPIDNKAVREVQK 123 (437)
Q Consensus 101 ~~~~a~LR~alP~~n~~~r~iq~ 123 (437)
-+++.++||||||-....+++=.
T Consensus 57 PTgESivryALPIPssktkell~ 79 (170)
T PF15368_consen 57 PTGESIVRYALPIPSSKTKELLS 79 (170)
T ss_pred CCchhHHHhhcCCCchhhhhhhh
Confidence 37999999999996655555433
No 44
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=40.03 E-value=25 Score=35.30 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=44.3
Q ss_pred cceEEEEeCCCCCCC------------CCCCCCCCCccEEEEEecChHHHHhhhcCCceEEEEE-ecCCCcCCCC
Q 013730 370 SSQVFWLLKESELTP------------SNANILDGRYAVFGYVTENEGLLADVKVGDVIQSIQV-VSGLENLVNP 431 (437)
Q Consensus 370 gSQFFI~L~d~~lt~------------~g~~~LDG~ytVFG~VveG~dVL~kI~~gD~I~Sa~V-v~g~~~l~~p 431 (437)
+.||+|-|.|+.++. +....+|.-|.+.|.|--....|+.++++|+|.|.-- .-|.-+|.+.
T Consensus 206 ~Pq~yIKLsDeNl~IqdVq~~D~L~~l~n~tvm~riyc~igt~~~dih~lrn~kkdd~i~~~gyhlfgg~~lirn 280 (305)
T PF06622_consen 206 NPQAYIKLSDENLMIQDVQDADELCHLSNNTVMNRIYCAIGTIHVDIHMLRNIKKDDIINSDGYHLFGGCRLIRN 280 (305)
T ss_pred CceEEEEEccCCcchhhhhhcchhhccchhhhhheeEEEeeeEEEEhHhhhcccccccccCcceEEecceEEEec
Confidence 568999888766553 3334567789999999878889999999998887643 2233344443
No 45
>PF02538 Hydantoinase_B: Hydantoinase B/oxoprolinase; InterPro: IPR003692 An appreciable fraction of the sulphur present in mammals occurs in the form of glutathione. The synthesis of glutathione and its utilization take place by the reactions of the gamma-glutamyl cycle, which include those catalysed by gamma-glutamylcysteine and glutathione synthetases, gamma-glutamyl transpeptidase, cysteinylglycinase, gamma-glutamyl cyclotransferease, and 5-oxoprolinase []. This family includes N-methylhydantoinase B which converts hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase 3.5.2.9 from EC which catalyses the formation of L-glutamate from 5-oxo-L-proline. These enzymes are part of the oxoprolinase family and are related to hydantoinase_A.; GO: 0003824 catalytic activity
Probab=36.98 E-value=95 Score=34.09 Aligned_cols=125 Identities=15% Similarity=0.199 Sum_probs=72.2
Q ss_pred hhhccccCCCChH--HHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHhcCccchhHHHHHHH
Q 013730 130 DSLKIAGVKALDP--VERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELL 207 (437)
Q Consensus 130 ~~lr~~~~k~~~~--~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~~~~~~~~~~~L 207 (437)
|=||+|..|-+.. +..||-+ +++.++. --..+|......-.++++.++.+.++|.+.++.-..|.+....++++
T Consensus 143 EGl~iPpvKl~~~G~~~~dv~~--~~i~~n~--~~sR~P~~~~gDl~A~iaa~~~g~~rl~el~~~yG~d~v~~~~~~~~ 218 (527)
T PF02538_consen 143 EGLRIPPVKLYERGVLNEDVLD--RIILRNV--FNSRVPDQVLGDLRAQIAACRIGARRLLELIERYGADTVRAAMDEIL 218 (527)
T ss_pred CCCeeeeEEEEECCEeCHHHHH--HHHHhCC--CCCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568887774433 4444433 1222221 11467777777888888899999999999999888888887777776
Q ss_pred HHhcccccccccCCCCCCCccccc--CCcCC--CceEEEEEEEecCCCCceeeeEEEEEcCC
Q 013730 208 NYVGGVEEDMVDGFPYEVPEEYQS--MPLLK--GRATVDMKVKVKDNPNVDECVFRIVLDGY 265 (437)
Q Consensus 208 ~~v~~le~~~v~~~p~~vP~~y~~--~P~l~--GratV~~~~~~~~~~~t~~G~I~IeLd~~ 265 (437)
+..-+.-...+..+|- .=..|.- .-... ..-.+.+++++ +.++|++.+.+.
T Consensus 219 ~~sE~~~r~~I~~lpd-~~g~~~~~~~~~~~~~~~i~i~v~vtv------~gd~l~~DfsGt 273 (527)
T PF02538_consen 219 DYSERRMRAAIAELPD-GYGTYEFEDYDDGDDGEPIKIKVTVTV------KGDELTVDFSGT 273 (527)
T ss_pred HHHHHHHHHHHHhcCc-cCCceEeeeecCCCCCcEEEEEEEEEE------CCCEEEEEcCCC
Confidence 6654443333333432 0011111 11111 12344455433 347899998874
No 46
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=36.78 E-value=1.9e+02 Score=24.31 Aligned_cols=49 Identities=27% Similarity=0.269 Sum_probs=32.0
Q ss_pred HHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHH---HHhHHHHHHHHH
Q 013730 144 ERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKL---EAGMDELQQIVE 192 (437)
Q Consensus 144 ~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l---~~~l~~l~~~~~ 192 (437)
+.+++.|+.-.-.....-+..+|..--+.+.++|.++ +..+..|+.-+.
T Consensus 27 E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~ 78 (88)
T PF14389_consen 27 EQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVL 78 (88)
T ss_pred HHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888874444455556567777777888887664 666666665544
No 47
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=35.31 E-value=1.7e+02 Score=29.79 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=47.7
Q ss_pred HHHHHHHHhHHHHHHHHHhcCccchh--HHHHHHHHHhcccccccccCCCCCCCcccccCCcC---CCceEEEEEEEecC
Q 013730 175 ELLQKLEAGMDELQQIVEDRDRDAVA--PKQKELLNYVGGVEEDMVDGFPYEVPEEYQSMPLL---KGRATVDMKVKVKD 249 (437)
Q Consensus 175 ~~~~~l~~~l~~l~~~~~~~d~~~~~--~~~~~~L~~v~~le~~~v~~~p~~vP~~y~~~P~l---~GratV~~~~~~~~ 249 (437)
.-+.+|......|..+....-....| ....++|...|-. .+. +|.....+ .++..+++.|..++
T Consensus 48 ~~~~~l~~~~~~L~~aL~~~k~rG~wGE~~Le~iLe~~gl~-----~~~------~y~~Q~~~~~~~~~~rpD~vI~LP~ 116 (304)
T PF02646_consen 48 GEIQQLSQEASNLTSALKNSKTRGNWGEMQLERILEDSGLP-----EGC------DYETQVSLDEDGNGLRPDFVIHLPG 116 (304)
T ss_pred hHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHcCCC-----ccc------chhhcccccCCCCCcCceEEEEcCC
Confidence 44578888888888888865555555 4456677766622 221 34433333 45667888886654
Q ss_pred CCCceeeeEEEEEcCCCChHHH
Q 013730 250 NPNVDECVFRIVLDGYNAPVTA 271 (437)
Q Consensus 250 ~~~t~~G~I~IeLd~~~AP~Ta 271 (437)
|+ .|.+|. .+|.++
T Consensus 117 ------~~-~i~IDS-K~pl~~ 130 (304)
T PF02646_consen 117 ------GR-HIPIDS-KFPLEA 130 (304)
T ss_pred ------CC-EEEEec-CCCHHH
Confidence 22 666666 567665
No 48
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=31.96 E-value=2e+02 Score=24.79 Aligned_cols=80 Identities=11% Similarity=0.251 Sum_probs=58.7
Q ss_pred hHHHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHhcCc
Q 013730 117 AVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDR 196 (437)
Q Consensus 117 ~~r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~ 196 (437)
.-..+++.|+.+...+.. .-|..-.+...+..+.-... ...+.-+- =-+-++.+...|.+|...++.+|+
T Consensus 24 ~~~~i~~~l~~i~~~i~~---~dW~~A~~~~~~l~~~W~k~-~~~~~~~~------~h~eid~i~~sl~rl~~~i~~~dk 93 (121)
T PF14276_consen 24 STDSIEEQLEQIEEAIEN---EDWEKAYKETEELEKEWDKN-KKRWSILI------EHQEIDNIDISLARLKGYIEAKDK 93 (121)
T ss_pred HHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhh-chheeeee------cHHHHHHHHHHHHHHHHHHHCCCH
Confidence 346788889999999987 77988888888777776544 33333221 124578899999999999999999
Q ss_pred cchhHHHHHH
Q 013730 197 DAVAPKQKEL 206 (437)
Q Consensus 197 ~~~~~~~~~~ 206 (437)
+........+
T Consensus 94 ~~~l~el~~l 103 (121)
T PF14276_consen 94 SESLAELAEL 103 (121)
T ss_pred HHHHHHHHHH
Confidence 8777555444
No 49
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=27.88 E-value=1.2e+02 Score=25.26 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=43.9
Q ss_pred ChHHHHhHHHHHHHHhcCccchhcccccccHHHHH----------HHHHHHHHhHHHHHHHHHhcCccchhHHHHHHHHH
Q 013730 140 LDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGM----------ELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNY 209 (437)
Q Consensus 140 ~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~----------~~~~~l~~~l~~l~~~~~~~d~~~~~~~~~~~L~~ 209 (437)
...|.....+-...|..+++.+|..|-...+..-. ..+++|...++..+..+...|.-.|....+.+...
T Consensus 41 ~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~r 120 (127)
T smart00502 41 EAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIER 120 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 44555666666778888888888888665444332 22333444444455555555666777777766655
Q ss_pred hcc
Q 013730 210 VGG 212 (437)
Q Consensus 210 v~~ 212 (437)
+..
T Consensus 121 l~~ 123 (127)
T smart00502 121 LQN 123 (127)
T ss_pred HHH
Confidence 543
No 50
>PRK10807 paraquat-inducible protein B; Provisional
Probab=25.73 E-value=1.7e+02 Score=32.49 Aligned_cols=81 Identities=12% Similarity=0.250 Sum_probs=44.2
Q ss_pred cCCCCChhHHHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhc---CccchhcccccccHHHH-HHHHHHHHHhHH
Q 013730 110 ALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQ---GKSLIVEGLAESKKEHG-MELLQKLEAGMD 185 (437)
Q Consensus 110 alP~~n~~~r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~---~~~~il~~vp~~~~~~~-~~~~~~l~~~l~ 185 (437)
-||-....+.++|+++.+|-+.+.. -+...+..++..+++-+.. +=+..++.+-.--...+ ..+..+|++.|+
T Consensus 407 vIPt~ps~l~~l~~~~~~il~kin~---lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~ 483 (547)
T PRK10807 407 IIPTVSGGLAQIQQKLMEALDKINN---LPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLR 483 (547)
T ss_pred eeecCCCCHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 4788888899999999888877754 4455555544433332211 11112211110001122 233367777777
Q ss_pred HHHHHHHh
Q 013730 186 ELQQIVED 193 (437)
Q Consensus 186 ~l~~~~~~ 193 (437)
+++..++.
T Consensus 484 ~l~~~l~~ 491 (547)
T PRK10807 484 ELNRSMQG 491 (547)
T ss_pred HHHHHHhh
Confidence 77777765
No 51
>PRK11820 hypothetical protein; Provisional
Probab=24.07 E-value=1.2e+02 Score=30.88 Aligned_cols=52 Identities=15% Similarity=0.290 Sum_probs=35.4
Q ss_pred hcccccccHHHHHHHHHHHHHhHHHHHHHHHh---cCccchhHHHHHHHHHhccc
Q 013730 162 VEGLAESKKEHGMELLQKLEAGMDELQQIVED---RDRDAVAPKQKELLNYVGGV 213 (437)
Q Consensus 162 l~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~---~d~~~~~~~~~~~L~~v~~l 213 (437)
|+.+-..++.+|+.|...|..-|+.|+..++. .-+..+-.-+.++...+.++
T Consensus 139 L~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el 193 (288)
T PRK11820 139 LDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEEL 193 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 33444578889999999998888888776663 44455555566666666654
No 52
>PRK04330 hypothetical protein; Provisional
Probab=23.69 E-value=2.9e+02 Score=23.64 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=47.6
Q ss_pred hhHHHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 013730 116 KAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRD 195 (437)
Q Consensus 116 ~~~r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~~d 195 (437)
+-++++=.-|+.|..+--+| | .+.+....|...|.+++..+ --..-..+..|.++ ++|
T Consensus 9 ~~ik~~~~~L~~I~~D~sVP--R---NIRraa~ea~~~L~~e~~~~---------------~vRaA~AIs~LdeI--s~D 66 (88)
T PRK04330 9 EKIKQAIQMLEEIINDTSVP--R---NIRRAATEAKEILLNEEESP---------------GVRAATAISILDEI--SND 66 (88)
T ss_pred HHHHHHHHHHHHHhcCCCCC--h---HHHHHHHHHHHHHhCcCcch---------------hHHHHHHHHHHHHh--hcC
Confidence 44566666677777777665 2 34455555555665443211 11112334445555 567
Q ss_pred ccchhHHHHHHHHHhcccccc
Q 013730 196 RDAVAPKQKELLNYVGGVEED 216 (437)
Q Consensus 196 ~~~~~~~~~~~L~~v~~le~~ 216 (437)
+--...+|..++..++.||..
T Consensus 67 PNmP~h~RT~IW~ivS~LEti 87 (88)
T PRK04330 67 PNMPLHTRTLIWNIVSQLETI 87 (88)
T ss_pred CCCChHHHHHHHHHHHHHhcC
Confidence 888889999999999998863
No 53
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=23.45 E-value=3.7e+02 Score=21.20 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=41.0
Q ss_pred HHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHH
Q 013730 119 REVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVE 192 (437)
Q Consensus 119 r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~ 192 (437)
+.+|..|+++-..|++ =-.+..-..+..+++..++.. .....++.-+.+....|+.|+..++
T Consensus 5 ~~~~~~l~~L~~~l~~-----E~~~r~Gaenm~~~~~~~~~~-------~~~~~~~~~l~es~~ki~~Lr~~L~ 66 (72)
T cd00089 5 SKLQSRLERLEKELSI-----ELKVKEGAENLLRLYSDEKKK-------KLLAEAEQMLRESKQKLELLKMQLE 66 (72)
T ss_pred chHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCc-------cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888876 122333444455566655543 5667788888887777777777654
No 54
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.80 E-value=2.4e+02 Score=24.32 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhcCccchhHHHHHHHHHhcccccc
Q 013730 183 GMDELQQIVEDRDRDAVAPKQKELLNYVGGVEED 216 (437)
Q Consensus 183 ~l~~l~~~~~~~d~~~~~~~~~~~L~~v~~le~~ 216 (437)
.+.-|.++ ++|+--....|..++..++.||..
T Consensus 60 aIsiLeei--snDPNmP~h~RT~iw~vis~LE~i 91 (93)
T COG1698 60 AISILEEI--SNDPNMPLHARTLIWNVISQLETI 91 (93)
T ss_pred HHHHHHHH--hcCCCCchHHHHHHHHHHHHHHhc
Confidence 44455555 467777788999999999988864
No 55
>PF08559 Cut8_C: Cut8 six-helix bundle; InterPro: IPR013868 In Schizosaccharomyces pombe (Fission yeast), Cut8 is a nuclear envelope protein that physically interacts with and tethers 26S proteasome in the nucleus resulting in the nuclear accumulation of proteasomes []. Cut8 is a proteasome substrate and amino terminal residues 1-72 are polyubiquitinated and function as a degron tag. Ubiquitination of the amino terminal is essential to the function of Cut8. Lysine residues in the amino terminal 72 amino acids of Cut8 are required for physical interaction with the proteasome. In fission yeast the function of Cut8 has been demonstrated to be regulated by ubiquitin-conjugating Rhp6/Ubc2/Rad6 and ligating enzymes Ubr1. Cut8 homologs have been identified in Drosophila melanogaster (Fruit fly), Anopheles gambiae (African malaria mosquito) and Dictyostelium discoideum (Slime mold). ; PDB: 3Q5W_A 3Q5X_A.
Probab=21.62 E-value=1e+02 Score=28.19 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=43.2
Q ss_pred hHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHhcCccch
Q 013730 146 NVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAV 199 (437)
Q Consensus 146 ~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~~~~ 199 (437)
||..++.+|...++.|.+++|-.+-....-.+..++..|.+|...+.+.-+.-.
T Consensus 2 ~i~~~~~~L~~~~~~i~~s~Py~~~~~~dyaY~Rvk~~L~~F~~~L~D~~~~~l 55 (143)
T PF08559_consen 2 DIQSALEVLQQKQENIYKSFPYSRSVSSDYAYNRVKPHLLEFLKALSDFGLNFL 55 (143)
T ss_dssp -HHHHHHHHHHHHHHHHHTS-SSS-TTSHHHHHHHHHHHHHHHHHHHHHGGGGS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578899999999999999999887766678888999999999998887666555
No 56
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=21.14 E-value=1e+02 Score=27.97 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=37.0
Q ss_pred ChhHHHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhccccc--ccHHHHHHHHHHHHHhHHHHHHHHH
Q 013730 115 NKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAE--SKKEHGMELLQKLEAGMDELQQIVE 192 (437)
Q Consensus 115 n~~~r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~--~~~~~~~~~~~~l~~~l~~l~~~~~ 192 (437)
|..|+++-+.||+|...|..+ ..-..++....+.|+..+-. -.++.|++++..|+.-.++|+..+.
T Consensus 15 ~~vI~d~~e~leei~~~L~~~------------e~I~emFr~D~e~Il~~~~~Gdi~eEEA~~ll~eL~~~asqL~~~~~ 82 (127)
T PF14591_consen 15 NSVIPDVEEDLEEIFESLADK------------EEIEEMFRSDLEDILEDYKSGDIDEEEALQLLDELKSYASQLQEHYF 82 (127)
T ss_dssp ------TSS-GGGHHH-HT-H------------HHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHcCH------------HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999988752 12222344444444443332 3688999999999887788877654
No 57
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=21.08 E-value=1.7e+02 Score=24.54 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHh--cCccchh
Q 013730 172 HGMELLQKLEAGMDELQQIVED--RDRDAVA 200 (437)
Q Consensus 172 ~~~~~~~~l~~~l~~l~~~~~~--~d~~~~~ 200 (437)
.-...|.+|+..|++|+++|.. +++.+|-
T Consensus 43 eL~~~l~~ie~~L~DL~~aV~ive~np~kF~ 73 (97)
T PF09177_consen 43 ELRNALQSIEWDLEDLEEAVRIVEKNPSKFN 73 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccC
Confidence 3445677788899999998774 6666654
No 58
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=21.03 E-value=14 Score=32.66 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.6
Q ss_pred cEEEEEecChHHHHhhhcCCceE
Q 013730 395 AVFGYVTENEGLLADVKVGDVIQ 417 (437)
Q Consensus 395 tVFG~VveG~dVL~kI~~gD~I~ 417 (437)
-|.|++++|||.|.++..||+|.
T Consensus 100 NvIGrIv~~lE~lk~v~dGe~v~ 122 (126)
T COG2164 100 NVIGRIVKNLELLKSVDDGERVI 122 (126)
T ss_pred HHHHHHHhhHHhhhcccCCceEE
Confidence 47999999999999999999664
No 59
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=20.91 E-value=6.6e+02 Score=23.13 Aligned_cols=82 Identities=24% Similarity=0.310 Sum_probs=42.2
Q ss_pred CCCCCCCHHHH---Hhh--cCCCCChhHHHHhhhhhh-hhhhh----c---cccCCCChHHHHhHHHHHHHHhcCccchh
Q 013730 96 SGPPIKDPGAL---LRY--ALPIDNKAVREVQKPLED-ITDSL----K---IAGVKALDPVERNVRQASRTLKQGKSLIV 162 (437)
Q Consensus 96 ~g~~~~~~~a~---LR~--alP~~n~~~r~iq~~lE~-~~~~l----r---~~~~k~~~~~~~~v~~a~~~l~~~~~~il 162 (437)
.|+=+.|-.+. ||. +||-|.+...+.|+..-+ |.+.+ | ..|...+..|...+..-..--+... -
T Consensus 34 tg~Y~~DT~~Vi~tlr~~i~lpkd~p~~~~a~~~ar~~indyvsrYRr~~~v~g~~SFttm~TALNsLAGHY~sy~---~ 110 (135)
T TIGR03044 34 TGDYVEDTLAVIQTLREAIDLPDDDPNKSEAQAEARQLINDYISRYRRRPRVNGLSSFTTMQTALNSLAGHYKSYA---N 110 (135)
T ss_pred cchHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCCcCCcccHHHHHHHHHHHHHHhccCC---C
Confidence 44444444333 343 468899999999987644 44443 2 2223345555555443333333332 3
Q ss_pred cccccccHHHHHHHHHHH
Q 013730 163 EGLAESKKEHGMELLQKL 180 (437)
Q Consensus 163 ~~vp~~~~~~~~~~~~~l 180 (437)
..||+..|+.-++-+++.
T Consensus 111 rPlPeklk~Rl~~El~~A 128 (135)
T TIGR03044 111 RPLPEKLKERLEKELKKA 128 (135)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 567766665444433333
No 60
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=20.81 E-value=2.1e+02 Score=24.79 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=48.3
Q ss_pred hHHHHhhhhhhhhhhhccccCCCChHHHHhHHHHH---HHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHH
Q 013730 117 AVREVQKPLEDITDSLKIAGVKALDPVERNVRQAS---RTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIV 191 (437)
Q Consensus 117 ~~r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~---~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~ 191 (437)
+++.|+++|++= .-+.|..+..|++.-. ...+ .++..+...+..-+..+++.++++.+.|..|+..+
T Consensus 42 dL~tI~~kl~~~-------~Y~s~~ef~~Dv~li~~Na~~yN-~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~~~~~ 111 (112)
T cd05511 42 DLQTIRKKISKH-------KYQSREEFLEDIELIVDNSVLYN-GPDSVYTKKAKEMLELAEELLAEREEKLTQLEKNI 111 (112)
T ss_pred CHHHHHHHHhcC-------CCCCHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 567777777752 2356777778877553 2554 45667777777888888999999999998888754
No 61
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.79 E-value=2.3e+02 Score=27.94 Aligned_cols=78 Identities=13% Similarity=0.219 Sum_probs=55.2
Q ss_pred ChhHHHHhhhhhhhhhhhcc-ccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHh
Q 013730 115 NKAVREVQKPLEDITDSLKI-AGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVED 193 (437)
Q Consensus 115 n~~~r~iq~~lE~~~~~lr~-~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~ 193 (437)
|+.+.++|..|..++..-.- --.+--..+.++|.+...-+. +-+..+.+.|+..|..+.--.++|+...+.|+..++.
T Consensus 9 ~~~~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~-rl~~~~~~epp~~rq~~rlr~dQl~~d~~~l~~~l~~ 87 (213)
T KOG3251|consen 9 NRQLDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQ-RLDVLVSKEPPKSRQAARLRVDQLLEDVEHLQTSLRT 87 (213)
T ss_pred HHHHHHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHH-HHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888877766644331 001224556777777766664 5577888999999999988899999998888887764
No 62
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.47 E-value=2.2e+02 Score=27.56 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=35.5
Q ss_pred CCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHh
Q 013730 137 VKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVED 193 (437)
Q Consensus 137 ~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~ 193 (437)
.+.|..+.+.++.--+++. +.++|+++++.+++.+++++..+..
T Consensus 122 ~~~~~~~~~~~~~lg~~~g-------------~e~~A~~~i~~~~~~~~~v~~~~~~ 165 (284)
T cd01148 122 EATLDDVYNDIRNLGKIFD-------------VEDRADKLVADLKARLAEISAKVKG 165 (284)
T ss_pred CCCHHHHHHHHHHHHHHhC-------------CHhHHHHHHHHHHHHHHHHHHhhcc
Confidence 4679888888887777773 3578999999999999999887654
No 63
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=20.04 E-value=59 Score=34.64 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=56.4
Q ss_pred hhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHhcCccchhHHHHHH
Q 013730 127 DITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKEL 206 (437)
Q Consensus 127 ~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~~~~~~~~~~~ 206 (437)
++.+.||..++|=| +++||..|..+|. .-|.+|+.+.. +....+=..|...|..|..+ ..-|.+.+..+...+
T Consensus 137 EaeyLlrlA~qkL~--l~~Dv~tA~alLk-sAD~rLa~~~d---P~l~~lR~Aia~DI~~L~av-~~vD~~Gl~lrL~~L 209 (390)
T PRK10920 137 QADFLVKLAGRKLW--SDQDVTTAAALLK-SADASLADMND---PSLITVRRAITDDIATLSAV-SQVDYDGIILKLNQL 209 (390)
T ss_pred HHHHHHHHHHHHHH--HcCCHHHHHHHHH-HHHHHHHhcCC---cchHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 34466777777755 6799999998885 66888887733 33444445556666666654 446778888888888
Q ss_pred HHHhcccccc
Q 013730 207 LNYVGGVEED 216 (437)
Q Consensus 207 L~~v~~le~~ 216 (437)
.+.|..|...
T Consensus 210 ~~qVd~LpL~ 219 (390)
T PRK10920 210 SNQVDNLRLA 219 (390)
T ss_pred HHHHhhCCCC
Confidence 7777765543
Done!