Query 013730
Match_columns 437
No_of_seqs 243 out of 1369
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 16:03:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfy_A Peptidyl-prolyl CIS-tra 100.0 3E-102 1E-106 789.3 24.0 359 79-437 11-369 (369)
2 2fu0_A Cyclophilin, putative; 100.0 7.8E-39 2.7E-43 291.9 17.2 142 239-422 6-159 (160)
3 2ok3_A Peptidyl-prolyl CIS-tra 100.0 1.2E-38 3.9E-43 290.9 17.7 136 254-423 8-156 (161)
4 2x7k_A Peptidyl-prolyl CIS-tra 100.0 1.5E-38 5.1E-43 291.7 17.6 135 237-413 10-145 (166)
5 2b71_A Cyclophilin-like protei 100.0 4.8E-39 1.7E-43 302.2 13.0 150 232-423 32-193 (196)
6 2poe_A Cyclophilin-like protei 100.0 5.3E-38 1.8E-42 292.7 16.8 145 239-423 17-175 (185)
7 3bo7_A Peptidyl-prolyl CIS-tra 100.0 8.3E-38 2.8E-42 294.6 17.8 147 236-424 4-174 (201)
8 2a2n_A Peptidylprolyl isomeras 100.0 1E-37 3.5E-42 288.7 18.0 133 238-412 21-154 (176)
9 1zkc_A Peptidyl-prolyl CIS-tra 100.0 1.1E-37 3.7E-42 293.3 17.9 146 236-423 17-175 (197)
10 2k7n_A Peptidyl-prolyl CIS-tra 100.0 1.6E-37 5.5E-42 293.2 17.9 146 237-424 10-167 (203)
11 2r99_A Peptidyl-prolyl CIS-tra 100.0 6.4E-37 2.2E-41 282.5 17.5 137 238-412 11-152 (173)
12 3ich_A Peptidyl-prolyl CIS-tra 100.0 6.3E-37 2.2E-41 286.1 16.6 153 231-423 10-178 (188)
13 3pmp_A Cyclophilin A; peptidyl 100.0 8E-37 2.7E-41 279.3 16.7 146 240-423 4-159 (164)
14 2z6w_A Peptidyl-prolyl CIS-tra 100.0 1.2E-36 4.2E-41 278.6 17.9 136 239-412 4-144 (165)
15 2wfi_A Peptidyl-prolyl CIS-tra 100.0 1.2E-36 4E-41 282.1 17.9 138 238-413 9-159 (179)
16 1a58_A Cyclophilin; isomerase, 100.0 1.8E-36 6.2E-41 280.3 18.7 139 237-413 5-156 (177)
17 2cmt_A Peptidyl-prolyl CIS-tra 100.0 1.7E-36 5.9E-41 279.5 18.5 138 238-413 10-152 (172)
18 1mzw_A Cyclophilin H, U-snRNP- 100.0 2.7E-36 9.1E-41 279.3 18.5 138 238-413 10-157 (177)
19 2igv_A Peptidyl-prolyl CIS-tra 100.0 2.3E-36 7.7E-41 278.7 17.8 137 238-412 3-151 (173)
20 2haq_A Cyclophilin; rotamase, 100.0 3E-36 1E-40 278.0 18.2 136 239-413 12-152 (172)
21 1qng_A Peptidyl-prolyl CIS-tra 100.0 1.7E-36 5.8E-41 278.9 16.2 139 238-414 3-152 (170)
22 2he9_A NK-tumor recognition pr 100.0 3.8E-36 1.3E-40 281.7 18.6 139 237-413 18-169 (192)
23 1v9t_A Cyclophilin B; beta bar 100.0 3.2E-36 1.1E-40 275.9 17.2 134 236-413 2-141 (166)
24 2ose_A Probable peptidyl-proly 100.0 2.4E-36 8.2E-41 290.8 17.2 148 231-412 7-185 (234)
25 2poy_A Peptidyl-prolyl CIS-tra 100.0 3.8E-36 1.3E-40 280.4 16.7 140 236-413 17-168 (186)
26 2hq6_A Serologically defined c 100.0 6.8E-36 2.3E-40 278.5 17.6 150 229-423 17-180 (185)
27 1w74_A Peptidyl-prolyl CIS-tra 100.0 6.7E-36 2.3E-40 279.9 16.7 131 238-413 23-171 (191)
28 2c3b_A Ppiase, cyclophilin; is 100.0 1.5E-36 5.3E-41 279.7 11.4 139 240-413 4-151 (172)
29 4fru_A Cyclophilin B, peptidyl 100.0 1.6E-35 5.6E-40 275.6 17.6 141 232-412 8-153 (185)
30 3rdd_A Peptidyl-prolyl CIS-tra 100.0 2.3E-35 7.7E-40 274.7 17.5 151 235-423 19-179 (184)
31 3bkp_A Cyclophilin; malaria, i 100.0 3.2E-35 1.1E-39 282.6 17.7 153 228-424 13-194 (232)
32 3k2c_A Peptidyl-prolyl CIS-tra 100.0 3.3E-35 1.1E-39 275.4 17.3 149 237-423 26-186 (193)
33 1lop_A Cyclophilin A; rotamase 100.0 1.8E-35 6.2E-40 270.4 14.5 124 254-413 7-139 (164)
34 3s6m_A Peptidyl-prolyl CIS-tra 100.0 3.3E-35 1.1E-39 269.1 14.6 130 239-412 4-142 (167)
35 1z81_A Cyclophilin; structural 100.0 5.2E-35 1.8E-39 280.6 16.0 142 234-413 55-208 (229)
36 1ihg_A Cyclophilin 40; ppiase 100.0 2.5E-34 8.5E-39 288.5 19.3 148 238-423 15-185 (370)
37 1vyk_A Oxygen-evolving enhance 94.7 0.049 1.7E-06 48.9 6.2 93 117-212 48-143 (149)
38 3zsu_A TLL2057 protein, cyanoq 93.1 0.2 6.7E-06 44.1 6.7 93 116-211 28-120 (130)
39 3ls0_A SLL1638 protein, PSBQ; 90.7 0.22 7.4E-06 44.0 4.3 93 116-211 30-123 (133)
40 2nnz_A Hypothetical protein; b 90.2 0.62 2.1E-05 41.8 6.9 24 255-278 38-61 (153)
41 3kop_A Uncharacterized protein 85.9 2.7 9.2E-05 38.9 8.3 24 255-278 31-55 (188)
42 1zx8_A Hypothetical protein TM 52.0 24 0.00083 30.9 5.8 56 353-416 74-129 (136)
43 2khf_A PLNJ; anti-microbial, b 33.7 10 0.00035 23.8 0.3 15 272-286 4-18 (26)
44 2c5k_T Syntaxin TLG1, T-snare 30.1 2E+02 0.0069 23.3 7.7 25 168-192 36-60 (95)
45 3ghg_C Fibrinogen gamma chain; 28.1 1E+02 0.0036 31.6 6.8 96 103-217 26-135 (411)
46 2ykz_A Cytochrome C'; electron 27.1 2.7E+02 0.0093 23.1 8.8 82 117-202 15-108 (127)
47 2j8w_A Cytochrome C'; heme, ir 24.7 3E+02 0.01 22.9 8.8 83 116-202 14-111 (129)
48 2r7a_A Bacterial heme binding 23.6 1.5E+02 0.0053 26.6 6.6 61 119-192 72-134 (256)
49 2k48_A Nucleoprotein; viral pr 21.7 79 0.0027 26.7 3.7 64 115-190 34-97 (107)
50 3lhs_A Ferrichrome ABC transpo 21.6 92 0.0031 28.8 4.7 57 122-191 100-157 (296)
51 4dnd_A Syntaxin-10, SYN10; str 20.2 1.6E+02 0.0056 25.2 5.6 79 116-210 31-117 (130)
No 1
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=100.00 E-value=3.2e-102 Score=789.32 Aligned_cols=359 Identities=84% Similarity=1.305 Sum_probs=345.4
Q ss_pred hhhhccCCCCCccccccCCCCCCCHHHHHhhcCCCCChhHHHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCc
Q 013730 79 NINANINMAMPDVSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGK 158 (437)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~g~~~~~~~a~LR~alP~~n~~~r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~ 158 (437)
..++-+++++|.+|+||+|||||||+|||||||||+|++||+||++||+|+++||+||||||++|++||++|+++|++++
T Consensus 11 ~~~~~~~~~~~~~~~l~~g~~~~~~~a~lr~alp~~~~~~~~~q~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~ 90 (369)
T 3rfy_A 11 GILLVANPVIPDVSVLISGPPIKDPEALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGK 90 (369)
T ss_dssp CEEEEECTTSCSCCEEEESTTSCCHHHHHHHHSCCCCHHHHHHHHHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHH
T ss_pred eEEEEecccCchhhccCCCCCCCCHHHHHhhhcCCCChhHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCH
Confidence 33444789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcccccccHHHHHHHHHHHHHhHHHHHHHHHhcCccchhHHHHHHHHHhcccccccccCCCCCCCcccccCCcCCCc
Q 013730 159 SLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNYVGGVEEDMVDGFPYEVPEEYQSMPLLKGR 238 (437)
Q Consensus 159 ~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~~~~~~~~~~~L~~v~~le~~~v~~~p~~vP~~y~~~P~l~Gr 238 (437)
++||++||+++|++|+++|++|+++|++|++++++||+++|+..|+++|+.|++||++||++|||+||++|.++|+++||
T Consensus 91 ~~il~~v~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~~~~~~~~~~~l~~v~~le~~~~~~fp~~vP~~y~~~P~l~gr 170 (369)
T 3rfy_A 91 SIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMPLLKGR 170 (369)
T ss_dssp HHHTTTCCGGGHHHHHHHHHHHHHHHHHHHCCCSSCCCSSSGGGHHHHHHHHHHHHHHSSCSSCSSCCSSCTTSCEECSE
T ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhccCCCccCchhcccCccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeeeCCcEEEecCCCCCCCCCcCCCCCcCcC
Q 013730 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRT 318 (437)
Q Consensus 239 atV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV~gfVIQ~GDp~g~g~G~~dp~t~~~~~ 318 (437)
++|+|+|.++++++++.|+|+|+||++.||+||+||++||+.|||||+.||||++||||||||.+++.|+.++.+++.+.
T Consensus 171 a~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV~gFmIQgGDp~g~G~G~~~~~~g~~~~ 250 (369)
T 3rfy_A 171 ASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSDGFVVQTGDPEGPAEGFIDPSTEKTRT 250 (369)
T ss_dssp EEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEEEEEEECCCCCCCCCSCCCSCCCCCCCS
T ss_pred eEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeeeCCeeEecCCCCCCCCCccCcccCcCcc
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEE
Q 013730 319 IPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFG 398 (437)
Q Consensus 319 iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG 398 (437)
+|+|+...|+..|+|+.+|+++|++...+.|+||.+|+|||||++.+|||++|||||++.|++|++++.++|||+|+|||
T Consensus 251 iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgkytVFG 330 (369)
T 3rfy_A 251 VPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFG 330 (369)
T ss_dssp SSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCEEEEE
T ss_pred cCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCeeEEE
Confidence 99999999999999999999999887788999999999999998558999999999999999999999999999999999
Q ss_pred EEecChHHHHhhhcCCceEEEEEecCCCcCCCCCccccC
Q 013730 399 YVTENEGLLADVKVGDVIQSIQVVSGLENLVNPSYKIAA 437 (437)
Q Consensus 399 ~VveG~dVL~kI~~gD~I~Sa~Vv~g~~~l~~p~~~~~~ 437 (437)
+|++|||||++|+.||+|+||+|++|+|||++|+++|+|
T Consensus 331 ~VveGmdVVdkI~~GD~I~sv~I~~g~~~l~~p~~~~~~ 369 (369)
T 3rfy_A 331 YVTDNEDFLADLKVGDVIESIQVVSGLENLANPSYKIAG 369 (369)
T ss_dssp EEEESTTGGGGCCTTCEEEEEEEEECGGGEESCCC----
T ss_pred EEecCHHHHHHHhCCCceEEEEEecCCccccCCccccCC
Confidence 999999999999999999999999999999999999986
No 2
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=100.00 E-value=7.8e-39 Score=291.93 Aligned_cols=142 Identities=25% Similarity=0.277 Sum_probs=123.6
Q ss_pred eEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCc
Q 013730 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTR 317 (437)
Q Consensus 239 atV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~ 317 (437)
..|.|++ +.|+|+|+||++.||+||+||++||+.|||||+.|||+ ++||||||||.++|.|+
T Consensus 6 ~~v~~~T--------~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg--------- 68 (160)
T 2fu0_A 6 KSAIIYT--------TMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGG--------- 68 (160)
T ss_dssp CEEEEEE--------TTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCC---------
T ss_pred CEEEEEe--------cCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEeCCcCCCCCCC---------
Confidence 3577776 89999999999999999999999999999999999999 99999999998877664
Q ss_pred CCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEE
Q 013730 318 TIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVF 397 (437)
Q Consensus 318 ~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVF 397 (437)
.++|+.+|+++ ..+.++|+.+|+|||||+ +||+++|||||+ +++.++|||+|+||
T Consensus 69 ------------~si~g~~~~dE----~~~~l~h~~~G~lsmA~~--gp~s~~SQFfI~-------~~~~~~Ldg~~tvF 123 (160)
T 2fu0_A 69 ------------ESIWGNEFEDE----FFDHLNHSKPFMVSMANC--GPNTNGSQFFIT-------TVPCPWLDFKHTVF 123 (160)
T ss_dssp ------------CCTTSSCBCCC----CBTTBCSSSSSEEEECCS--STTCBCSCEEEE-------SSCCGGGTTTSCEE
T ss_pred ------------CcccCCCcccc----ccCCcccCCceEEEEecC--CCCCcccEEEEE-------CCCCCccCCCcEEE
Confidence 45777777765 245788889999999998 799999999995 55678999999999
Q ss_pred EEEecChHHHHhhhcCC-----------ceEEEEEe
Q 013730 398 GYVTENEGLLADVKVGD-----------VIQSIQVV 422 (437)
Q Consensus 398 G~VveG~dVL~kI~~gD-----------~I~Sa~Vv 422 (437)
|+|++|||||++|+... +|.+++|.
T Consensus 124 G~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~ 159 (160)
T 2fu0_A 124 GKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKIN 159 (160)
T ss_dssp EEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC
T ss_pred EEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEe
Confidence 99999999999997632 67777764
No 3
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=100.00 E-value=1.2e-38 Score=290.86 Aligned_cols=136 Identities=30% Similarity=0.459 Sum_probs=120.8
Q ss_pred eeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCCCC
Q 013730 254 DECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPF 332 (437)
Q Consensus 254 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~pi 332 (437)
+.|+|+|+||++.||+||+||++||+.|||||+.|||+ ++||||||||.+++.|+ .++
T Consensus 8 ~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg---------------------~si 66 (161)
T 2ok3_A 8 DVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGG---------------------NSI 66 (161)
T ss_dssp TTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCC---------------------CCT
T ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCCCCCCC---------------------Ccc
Confidence 89999999999999999999999999999999999999 99999999999877663 467
Q ss_pred CCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhhc
Q 013730 333 YGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 333 y~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~~ 412 (437)
|+.+++++ ..+.++|+.+|+|||||+ +||+++|||||+ ++..++|||+|+|||+|++|||||++|+.
T Consensus 67 ~g~~~~dE----~~~~l~h~~~G~lsma~~--gp~s~~SQFfI~-------~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~ 133 (161)
T 2ok3_A 67 WGKKFEDE----YSEYLKHNVRGVVSMANN--GPNTNGSQFFIT-------YGKQPHLDMKYTVFGKVIDGLETLDELEK 133 (161)
T ss_dssp TSSCBCCC----CCTTCCSCSTTEEEECCS--STTCBCSCEEEE-------SSCCGGGTTTSCEEEEEEECHHHHHHHHT
T ss_pred cCCccccc----cCcCcCcCCCeEEEEecC--CCCCcceEEEEE-------cCCCCccCCCEeEEEEEeCCHHHHHHHHh
Confidence 77777765 246788999999999998 699999999995 55678999999999999999999999975
Q ss_pred C------C------ceEEEEEec
Q 013730 413 G------D------VIQSIQVVS 423 (437)
Q Consensus 413 g------D------~I~Sa~Vv~ 423 (437)
. | +|++++|..
T Consensus 134 ~~~~~~~~~P~~~v~I~~~~i~~ 156 (161)
T 2ok3_A 134 LPVNEKTYRPLNDVHIKDITIHA 156 (161)
T ss_dssp CCBCTTTCCBSSCCBEEEEEEEC
T ss_pred CCccCCCCCcCCCeEEEEEEEec
Confidence 3 2 788888875
No 4
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=100.00 E-value=1.5e-38 Score=291.65 Aligned_cols=135 Identities=29% Similarity=0.499 Sum_probs=119.5
Q ss_pred CceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCc
Q 013730 237 GRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEK 315 (437)
Q Consensus 237 GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~ 315 (437)
....|.|++ +.|+|+|+||++.||+||+||++||+.|||||+.|||| ++||||||||.+++.|+
T Consensus 10 ~~~~v~l~t--------~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg------- 74 (166)
T 2x7k_A 10 QPPNVYLET--------SMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGG------- 74 (166)
T ss_dssp CCSEEEEEE--------TTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEECCTTSSSSCC-------
T ss_pred CCCEEEEEe--------CCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEcCCCCCCCCCC-------
Confidence 346788887 89999999999999999999999999999999999999 99999999999877663
Q ss_pred CcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCcc
Q 013730 316 TRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYA 395 (437)
Q Consensus 316 ~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~yt 395 (437)
.++|+.+|+++. .+.++|+.+|+||||++ +||+++|||||+ +++.++|||+|+
T Consensus 75 --------------~si~g~~~~dE~----~~~l~h~~~G~lsmAn~--gp~s~gSQFfI~-------~~~~~~Ldg~~t 127 (166)
T 2x7k_A 75 --------------ASIYGKQFEDEL----HPDLKFTGAGILAMANA--GPDTNGSQFFVT-------LAPTQWLDGKHT 127 (166)
T ss_dssp --------------CCTTSSCBCCCC----CTTSCCCSTTEEEECBS--STTCBCSCEEEE-------SSCCGGGTTTSC
T ss_pred --------------CccCCCcccccc----ccccCCCCCeEEEEeeC--CCCCccceEEEE-------CCCCCccCCCee
Confidence 456777777652 36788888999999987 799999999995 556789999999
Q ss_pred EEEEEecChHHHHhhhcC
Q 013730 396 VFGYVTENEGLLADVKVG 413 (437)
Q Consensus 396 VFG~VveG~dVL~kI~~g 413 (437)
|||+|++|||||++|+..
T Consensus 128 vFG~Vv~G~dvv~~I~~~ 145 (166)
T 2x7k_A 128 IFGRVCQGIGMVNRVGMV 145 (166)
T ss_dssp EEEEEEECHHHHHHHTTS
T ss_pred EEEEEEcCHHHHHHHHcC
Confidence 999999999999999763
No 5
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=4.8e-39 Score=302.21 Aligned_cols=150 Identities=27% Similarity=0.412 Sum_probs=127.6
Q ss_pred CCcCCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcC
Q 013730 232 MPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFID 310 (437)
Q Consensus 232 ~P~l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~d 310 (437)
+|+..++..|.|++ +.|+|+|+||++.||+||+||++||+.|||||+.|||| ++||||||||.++|.|+
T Consensus 32 ~~~~~~~~~V~l~T--------~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQgGd~~~~g~gg-- 101 (196)
T 2b71_A 32 MKGHTERGYITIYT--------NLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGG-- 101 (196)
T ss_dssp HHHHHHSCEEEEEE--------TTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSSCC--
T ss_pred cCCcCCCcEEEEEe--------CCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEcCCCCCCCCCC--
Confidence 34445567888887 89999999999999999999999999999999999999 99999999999877664
Q ss_pred CCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCC
Q 013730 311 PSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANIL 390 (437)
Q Consensus 311 p~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~L 390 (437)
.++|+.+|+++ ..+.++|+.+|+||||++ +||+++||||| ++++.++|
T Consensus 102 -------------------~si~g~~~~dE----~~~~l~h~~~G~lsMAn~--gpns~gSQFFI-------t~~~~~~L 149 (196)
T 2b71_A 102 -------------------KSIYGEYFEDE----INKELKHTGAGILSMSNN--GPNTNSSQFFI-------TLAPLPHL 149 (196)
T ss_dssp -------------------CBTTBSCBCCC----CCTTCCCCSTTEEEECCS--STTCBSSCEEE-------ESSCCGGG
T ss_pred -------------------CccCCCccccc----ccCCcCcCCCeEEEEccC--CCCCcccEEEE-------ECCCCCcc
Confidence 45677777665 245788889999999987 79999999999 45667899
Q ss_pred CCCccEEEEEecChHHHHhhhcCC-----------ceEEEEEec
Q 013730 391 DGRYAVFGYVTENEGLLADVKVGD-----------VIQSIQVVS 423 (437)
Q Consensus 391 DG~ytVFG~VveG~dVL~kI~~gD-----------~I~Sa~Vv~ 423 (437)
||+|+|||+|++|||||++|+... +|.+++|+.
T Consensus 150 Dg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~i~~ 193 (196)
T 2b71_A 150 DGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAV 193 (196)
T ss_dssp TTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEEC--
T ss_pred CCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEEEec
Confidence 999999999999999999997642 677777764
No 6
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=100.00 E-value=5.3e-38 Score=292.65 Aligned_cols=145 Identities=24% Similarity=0.418 Sum_probs=124.6
Q ss_pred eEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCc
Q 013730 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTR 317 (437)
Q Consensus 239 atV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~ 317 (437)
..|.|.+ +.|+|+|+||++.||+||+||++||+.|||||+.|||| ++||||||||.+++.|+
T Consensus 17 ~~v~i~t--------~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg--------- 79 (185)
T 2poe_A 17 QGVRIIT--------NYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGG--------- 79 (185)
T ss_dssp CEEEEEE--------TTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEEEETTSSSSCC---------
T ss_pred eEEEEEe--------cCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEcCCCCCCCCCC---------
Confidence 4566655 79999999999999999999999999999999999999 99999999999877664
Q ss_pred CCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCC--CCCCCCcceEEEEeCCCCCCCCCCCCCCCCcc
Q 013730 318 TIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDE--FEDNSGSSQVFWLLKESELTPSNANILDGRYA 395 (437)
Q Consensus 318 ~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~--~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~yt 395 (437)
.++|+.+|+++ ..+.++|+.+|+|||||++ .+||+++|||||+ +++.++|||+|+
T Consensus 80 ------------~si~g~~~~dE----~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt-------~~~~~~LDg~~t 136 (185)
T 2poe_A 80 ------------ESIYGRYFDDE----IYPELKYDRRGILSMASKGASKKPNTNGSQFFIT-------YSSLPQLNGEYV 136 (185)
T ss_dssp ------------CBTTBSCBCCC----CCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEE-------SSCCGGGTTTSC
T ss_pred ------------CccCCCccccc----ccCCCccCCCeEEEEecCCCCCCCCCccceEEEE-------CCCCCccCCCee
Confidence 35677777765 2367888899999999982 1299999999994 566789999999
Q ss_pred EEEEEecChHHHHhhhcCC-----------ceEEEEEec
Q 013730 396 VFGYVTENEGLLADVKVGD-----------VIQSIQVVS 423 (437)
Q Consensus 396 VFG~VveG~dVL~kI~~gD-----------~I~Sa~Vv~ 423 (437)
|||+|++|||||++|+... +|+++.|+.
T Consensus 137 VFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i~~ 175 (185)
T 2poe_A 137 IFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIHS 175 (185)
T ss_dssp EEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEEEEEC
T ss_pred EEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEEC
Confidence 9999999999999997531 788888875
No 7
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=100.00 E-value=8.3e-38 Score=294.63 Aligned_cols=147 Identities=22% Similarity=0.351 Sum_probs=120.9
Q ss_pred CCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEec-----CCCCCCCCCc
Q 013730 236 KGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTG-----DPEGPAEGFI 309 (437)
Q Consensus 236 ~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~G-----Dp~g~g~G~~ 309 (437)
+.+..|.|++ +.|+|+|+||++.||+||+||+.||+.|||||+.|||| ++|||||| ||.++|.|+
T Consensus 4 ~~~~~v~l~T--------~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg- 74 (201)
T 3bo7_A 4 KKKGYLRIVT--------TQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQ- 74 (201)
T ss_dssp -CCEEEEEEE--------TTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGCCC--------
T ss_pred CCceEEEEEe--------CCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCcccccCCCCCCCCC-
Confidence 4567888887 89999999999999999999999999999999999999 99999999 999887764
Q ss_pred CCCCCcCcCCCccccccCCCCCCC-------CCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCC
Q 013730 310 DPSTEKTRTIPLEIMVEGEKSPFY-------GATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESEL 382 (437)
Q Consensus 310 dp~t~~~~~iPlEi~~~g~~~piy-------~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~l 382 (437)
.++| +.+|+++ ..+.++|+.+|+||||++ +||+++|||||
T Consensus 75 --------------------~si~~~~~~~~g~~f~dE----~~~~l~h~~~G~lsmA~~--gp~s~gSQFFI------- 121 (201)
T 3bo7_A 75 --------------------QSPRSISGFPGGAPFEDE----FDNRLVHQGIGVLSMAND--GKHSNLSEFFI------- 121 (201)
T ss_dssp --------------------CCSSCCCSSTTCCCBCCC----CCTTCCCCSTTEEEECCS--STTCBSSCEEE-------
T ss_pred --------------------ccccccccccCCCcccCc----ccCCCCcCCCcEEEEeeC--CCCCcccEEEE-------
Confidence 2333 4455543 246788889999999998 79999999999
Q ss_pred CCCCCCCCCCCccEEEEEecChHHHHhhhcCC-----------ceEEEEEecC
Q 013730 383 TPSNANILDGRYAVFGYVTENEGLLADVKVGD-----------VIQSIQVVSG 424 (437)
Q Consensus 383 t~~g~~~LDG~ytVFG~VveG~dVL~kI~~gD-----------~I~Sa~Vv~g 424 (437)
++++.++|||+|+|||+|++|||||++|+... +|.++.|+.+
T Consensus 122 t~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~v~~d 174 (201)
T 3bo7_A 122 TFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEIIVFKN 174 (201)
T ss_dssp ESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSCCBEEEEEEEEC
T ss_pred ECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEEcC
Confidence 45678999999999999999999999997642 7889998763
No 8
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=1e-37 Score=288.66 Aligned_cols=133 Identities=26% Similarity=0.382 Sum_probs=118.1
Q ss_pred ceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcC
Q 013730 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKT 316 (437)
Q Consensus 238 ratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~ 316 (437)
...|.+.+ +.|+|+|+||++.||+||+||++||+.|||||+.|||| ++|||||||+.+++.|+
T Consensus 21 ~~~v~~~t--------~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg-------- 84 (176)
T 2a2n_A 21 SDSAIIHT--------SMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGG-------- 84 (176)
T ss_dssp CSEEEEEE--------TTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCC--------
T ss_pred CCEEEEEe--------cCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEccCCCCCCCCC--------
Confidence 35677776 89999999999999999999999999999999999999 99999999998877664
Q ss_pred cCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccE
Q 013730 317 RTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAV 396 (437)
Q Consensus 317 ~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytV 396 (437)
.++|+.+|+++ ..+.++|+.+|+||||++ +||+++|||||+ +++.++|||+|+|
T Consensus 85 -------------~si~g~~~~dE----~~~~l~h~~~G~lsmA~~--gp~s~gSQFFIt-------~~~~~~LDg~~tV 138 (176)
T 2a2n_A 85 -------------ESIWGGEFEDE----FHSTLRHDRPYTLSMANA--GSNTNGSQFFIT-------VVPTPWLDNKHTV 138 (176)
T ss_dssp -------------CCTTSSCBCCC----CCTTCCSCSSSEEEECCS--STTCBCSCEEEE-------SSCCGGGTTTSCE
T ss_pred -------------CcccCCccccc----cccccccCCceEEEEEeC--CCCCcccEEEEE-------CCCCCccCCCeeE
Confidence 46777777765 235688889999999998 799999999994 5567899999999
Q ss_pred EEEEecChHHHHhhhc
Q 013730 397 FGYVTENEGLLADVKV 412 (437)
Q Consensus 397 FG~VveG~dVL~kI~~ 412 (437)
||+|++|||||++|+.
T Consensus 139 FG~Vv~Gmdvv~~I~~ 154 (176)
T 2a2n_A 139 FGRVTKGMEVVQRISN 154 (176)
T ss_dssp EEEEEECHHHHHHHHT
T ss_pred EEEEeCCHHHHHHHHc
Confidence 9999999999999975
No 9
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=1.1e-37 Score=293.27 Aligned_cols=146 Identities=27% Similarity=0.471 Sum_probs=126.3
Q ss_pred CCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCC
Q 013730 236 KGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTE 314 (437)
Q Consensus 236 ~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~ 314 (437)
....+|.|++ +.|+|+|+||++.||+||+||+.||+.|||||+.|||| ++||||||||.++|.|+
T Consensus 17 ~~~~~v~l~T--------~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQgGd~~~~g~Gg------ 82 (197)
T 1zkc_A 17 RGSGYVRLHT--------NKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGG------ 82 (197)
T ss_dssp CSCEEEEEEE--------TTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSCC------
T ss_pred CCCcEEEEEe--------CCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEcCCCCCCCCCC------
Confidence 3456788887 89999999999999999999999999999999999999 99999999999877664
Q ss_pred cCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCc
Q 013730 315 KTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRY 394 (437)
Q Consensus 315 ~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~y 394 (437)
.++|+.+|+++ ..+.++|+.+|+||||++ +||+++|||||+ +++.++|||+|
T Consensus 83 ---------------~si~g~~f~dE----~~~~l~h~~~G~lsMAn~--gp~sngSQFFIt-------~~~~~~LDg~~ 134 (197)
T 1zkc_A 83 ---------------ESYWGKPFKDE----FRPNLSHTGRGILSMANS--GPNSNRSQFFIT-------FRSCAYLDKKH 134 (197)
T ss_dssp ---------------CBTTBSCBCCC----CCTTCCSCSTTEEEECCS--STTCBCSCEEEE-------SSCCGGGTTTS
T ss_pred ---------------CccCCCccccc----cCcCcCCCCceEEEEecC--CCCCcccEEEEE-------cCCCCccCCCc
Confidence 35667666655 246788899999999998 799999999994 56678999999
Q ss_pred cEEEEEecChHHHHhhhcC------C------ceEEEEEec
Q 013730 395 AVFGYVTENEGLLADVKVG------D------VIQSIQVVS 423 (437)
Q Consensus 395 tVFG~VveG~dVL~kI~~g------D------~I~Sa~Vv~ 423 (437)
+|||+|++|||||++|+.. | +|.++.|+.
T Consensus 135 tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~~ 175 (197)
T 1zkc_A 135 TIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFV 175 (197)
T ss_dssp CEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEE
T ss_pred cEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEEc
Confidence 9999999999999999642 2 677777765
No 10
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=293.25 Aligned_cols=146 Identities=28% Similarity=0.473 Sum_probs=127.9
Q ss_pred CceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCc
Q 013730 237 GRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEK 315 (437)
Q Consensus 237 GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~ 315 (437)
.+..|.|++ +.|+|+|+||++.||+||+||++||+.|||||+.|||| ++||||||||.+++.|+
T Consensus 10 ~~~~V~l~T--------~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQgGd~~~~g~gg------- 74 (203)
T 2k7n_A 10 QPPNVYLET--------SMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGG------- 74 (203)
T ss_dssp CCSEEEEEE--------SSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEEECSSSSSSCC-------
T ss_pred CCCEEEEEe--------CCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEcCCCCCCCCCC-------
Confidence 346788887 89999999999999999999999999999999999999 99999999999877663
Q ss_pred CcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCcc
Q 013730 316 TRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYA 395 (437)
Q Consensus 316 ~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~yt 395 (437)
.++|+.+|+++. .+.++|+.+|+|+||++ +||+++|||||+ +++.++|||+|+
T Consensus 75 --------------~si~g~~f~dE~----~~~l~h~~~G~lsMAn~--gpnsngSQFFIt-------~~~~~~LDg~~t 127 (203)
T 2k7n_A 75 --------------ASIYGKQFEDEL----HPDLKFTGAGILAMANA--GPDTNGSQFFVT-------LAPTQWLDGKHT 127 (203)
T ss_dssp --------------CTTSCSCBCCCC----CCSSCCCSSCEEEEEES--STTCEEEEEEEE-------SSCCCSSTTTSC
T ss_pred --------------CccCCCcccccc----cccccCCCCeEEEEeeC--CCCCcccEEEEE-------cCCCCccCCCee
Confidence 457777777652 36788888999999997 799999999995 456789999999
Q ss_pred EEEEEecChHHHHhhhcCC-----------ceEEEEEecC
Q 013730 396 VFGYVTENEGLLADVKVGD-----------VIQSIQVVSG 424 (437)
Q Consensus 396 VFG~VveG~dVL~kI~~gD-----------~I~Sa~Vv~g 424 (437)
|||+|++|||||++|+... +|++++|+++
T Consensus 128 VFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~~ 167 (203)
T 2k7n_A 128 IFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGG 167 (203)
T ss_dssp EEEEEESCHHHHHHHHSCCEEETTEECCCCBEEEEEECCC
T ss_pred EEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEEec
Confidence 9999999999999997642 7899998765
No 11
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=100.00 E-value=6.4e-37 Score=282.51 Aligned_cols=137 Identities=28% Similarity=0.436 Sum_probs=119.0
Q ss_pred ceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh--cCC-CCCcEeeee-CCcEEEecCCC-CCCCCCcCCC
Q 013730 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RHF-YDGMEIQRA-DGFVVQTGDPE-GPAEGFIDPS 312 (437)
Q Consensus 238 ratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YdG~~f~RV-~gfVIQ~GDp~-g~g~G~~dp~ 312 (437)
+..|.|++.+.+ |+.|+|+|+||++.||+||+||++||+ +|| |||+.|||+ ++|||||||+. +++.|+
T Consensus 11 ~~~v~~di~i~~---t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg---- 83 (173)
T 2r99_A 11 NPQVYMDIKIGN---KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGG---- 83 (173)
T ss_dssp CCEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCC----
T ss_pred CCEEEEEEEECC---ccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCC----
Confidence 456777776654 589999999999999999999999994 788 999999999 99999999987 566553
Q ss_pred CCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCC
Q 013730 313 TEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDG 392 (437)
Q Consensus 313 t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG 392 (437)
.++|+..|+++. ..++|+.+|+|||||+ +||+++||||| +++..++|||
T Consensus 84 -----------------~si~g~~f~dE~-----~~l~h~~~G~lsmA~~--gp~t~gSQFfI-------t~~~~~~LDg 132 (173)
T 2r99_A 84 -----------------KSIYGKKFDDEN-----FILKHTGPGLLSMANS--GPNTNGSQFFL-------TCDKTDWLDG 132 (173)
T ss_dssp -----------------CBTTBSCBCCCC-----CCSCCCSSSEEEECCS--STTCBCSCEEE-------ESSCCGGGTT
T ss_pred -----------------CccCCCcccCcc-----cCcccCCCcEEEEccC--CCCCcccEEEE-------ECCCCCccCC
Confidence 457777777653 4688999999999998 79999999999 4566789999
Q ss_pred CccEEEEEecChHHHHhhhc
Q 013730 393 RYAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 393 ~ytVFG~VveG~dVL~kI~~ 412 (437)
+|+|||+|++|||||++|+.
T Consensus 133 ~~tVFG~Vv~G~dvv~~I~~ 152 (173)
T 2r99_A 133 KHVVFGEVTEGLDVLRQIEA 152 (173)
T ss_dssp TSCEEEEEEECHHHHHHHHT
T ss_pred CeeEEEEEEcCHHHHHHHHh
Confidence 99999999999999999976
No 12
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=6.3e-37 Score=286.06 Aligned_cols=153 Identities=27% Similarity=0.418 Sum_probs=125.6
Q ss_pred cCCcCCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh--cCC-CCCcEeeee-CCcEEEecC-CCCCC
Q 013730 231 SMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RHF-YDGMEIQRA-DGFVVQTGD-PEGPA 305 (437)
Q Consensus 231 ~~P~l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YdG~~f~RV-~gfVIQ~GD-p~g~g 305 (437)
..|.++.+ |.|++.+.+ |+.|+|+|+||++.||+||+||+.||+ +|| |||+.|||| ++||||||| +.++|
T Consensus 10 ~~p~~~~~--v~~di~i~~---t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g 84 (188)
T 3ich_A 10 KGPKVTVK--VYFDLRIGD---EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDG 84 (188)
T ss_dssp CSCEEEEE--EEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred CCCCcCCe--EEEEEEECC---EeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCC
Confidence 44555444 445544443 589999999999999999999999995 799 999999999 999999999 66777
Q ss_pred CCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCC
Q 013730 306 EGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPS 385 (437)
Q Consensus 306 ~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~ 385 (437)
.|+ .++|+.+|+++ ...++|+.+|+|||||+ ++|+++|||||+ ++
T Consensus 85 ~gg---------------------~si~g~~f~dE-----~~~l~h~~~G~lsmAn~--gp~tngSQFfIt-------~~ 129 (188)
T 3ich_A 85 TGG---------------------KSIYGERFPDE-----NFKLKHYGPGWVSMANA--GKDTNGSQFFIT-------TV 129 (188)
T ss_dssp SCC---------------------CBTTBSCBCCC-----CCCSCCCSTTEEEECCS--STTCBCSCEEEE-------SS
T ss_pred CCC---------------------ccccCCccccc-----ccCcccCCCeEEEEccC--CCCCcccEEEEE-------CC
Confidence 663 45777777765 34688899999999998 799999999994 55
Q ss_pred CCCCCCCCccEEEEEecChHHHHhhhcC-----C------ceEEEEEec
Q 013730 386 NANILDGRYAVFGYVTENEGLLADVKVG-----D------VIQSIQVVS 423 (437)
Q Consensus 386 g~~~LDG~ytVFG~VveG~dVL~kI~~g-----D------~I~Sa~Vv~ 423 (437)
..++|||+|+|||+|++|||||++|+.. | +|.++.++.
T Consensus 130 ~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~~~l~ 178 (188)
T 3ich_A 130 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIE 178 (188)
T ss_dssp CCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEE
T ss_pred CCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEEeEEEe
Confidence 6789999999999999999999999764 2 566666653
No 13
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=100.00 E-value=8e-37 Score=279.35 Aligned_cols=146 Identities=27% Similarity=0.397 Sum_probs=123.5
Q ss_pred EEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh--cCC-CCCcEeeee-CCcEEEecC-CCCCCCCCcCCCCC
Q 013730 240 TVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RHF-YDGMEIQRA-DGFVVQTGD-PEGPAEGFIDPSTE 314 (437)
Q Consensus 240 tV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YdG~~f~RV-~gfVIQ~GD-p~g~g~G~~dp~t~ 314 (437)
.|.|.+.+.+ |+.|+|+|+||++.||+||+||++||+ .|| |||+.|||+ ++||+|||| +.+++.|+
T Consensus 4 ~vf~di~i~~---t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg------ 74 (164)
T 3pmp_A 4 NVFFNISIND---KPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGG------ 74 (164)
T ss_dssp CEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCC------
T ss_pred EEEEEEEECC---EEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCC------
Confidence 4666666654 589999999999999999999999999 899 999999999 999999999 55666663
Q ss_pred cCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCc
Q 013730 315 KTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRY 394 (437)
Q Consensus 315 ~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~y 394 (437)
.++|+.+++++ ...++|+.+|+|||||+ ++|+++||||| ++++.++|||+|
T Consensus 75 ---------------~si~g~~~~dE-----~~~l~h~~~G~lsma~~--g~~t~~SQFfI-------t~~~~~~Ld~~~ 125 (164)
T 3pmp_A 75 ---------------KSIYGEKFADE-----NFQVKHTKPGLLSMANA--GANTNGSQFFI-------TTVPTSWLDGKH 125 (164)
T ss_dssp ---------------CBTTBSCBCCC-----CCCSCCCSTTEEEECBS--STTCBCSCEEE-------ESSCCGGGTTTS
T ss_pred ---------------cccCCcccccc-----ccccCcCCCcEEEEeeC--CCCCcccEEEE-------ECCCChhhCCCc
Confidence 45777777765 34788899999999998 69999999999 456678999999
Q ss_pred cEEEEEecChHHHHhhhc-----CCceEEEEEec
Q 013730 395 AVFGYVTENEGLLADVKV-----GDVIQSIQVVS 423 (437)
Q Consensus 395 tVFG~VveG~dVL~kI~~-----gD~I~Sa~Vv~ 423 (437)
+|||+|++|||||++|+. |..++.++|.+
T Consensus 126 ~vFG~Vv~G~~vv~~I~~~~~~~~~P~~~v~I~~ 159 (164)
T 3pmp_A 126 VVFGEVIEGLDIVRKVEGKGSASGKTNATIKITD 159 (164)
T ss_dssp CEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHhCCCCCCCcccCEEEEe
Confidence 999999999999999974 34555555544
No 14
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=100.00 E-value=1.2e-36 Score=278.58 Aligned_cols=136 Identities=26% Similarity=0.382 Sum_probs=118.4
Q ss_pred eEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh--cCC-CCCcEeeee-CCcEEEecCCC-CCCCCCcCCCC
Q 013730 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RHF-YDGMEIQRA-DGFVVQTGDPE-GPAEGFIDPST 313 (437)
Q Consensus 239 atV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YdG~~f~RV-~gfVIQ~GDp~-g~g~G~~dp~t 313 (437)
..|.|++.+.+ |+.|+|+|+||++.||+||+||++||+ +|| |||+.|||+ ++|||||||+. ++|.|+
T Consensus 4 ~~v~~di~i~~---t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg----- 75 (165)
T 2z6w_A 4 PLVYLDVDANG---KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGG----- 75 (165)
T ss_dssp CEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCC-----
T ss_pred CEEEEEEEECC---EeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCC-----
Confidence 46777776654 589999999999999999999999999 999 999999999 99999999996 566553
Q ss_pred CcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCC
Q 013730 314 EKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGR 393 (437)
Q Consensus 314 ~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ 393 (437)
.++|+.+|+++ .+.++|+.+|+||||++ +||+++|||||+ ++..++|||+
T Consensus 76 ----------------~si~g~~f~dE-----~~~l~h~~~G~lsmA~~--gp~s~~SQFfI~-------~~~~~~Ldg~ 125 (165)
T 2z6w_A 76 ----------------KSIYGSRFPDE-----NFTLKHVGPGVLSMANA--GPNTNGSQFFIC-------TIKTDWLDGK 125 (165)
T ss_dssp ----------------CBTTBSCBCCC-----CCCSCCCSTTEEEECCS--STTCBCSCEEEE-------SSCCGGGTTT
T ss_pred ----------------CcccCCcccCc-----ccccccCCCCEEEEeeC--CCCCcccEEEEE-------cCCCcccCCC
Confidence 45677777765 34788888999999998 699999999994 5567899999
Q ss_pred ccEEEEEecChHHHHhhhc
Q 013730 394 YAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 394 ytVFG~VveG~dVL~kI~~ 412 (437)
|+|||+|++|||||++|+.
T Consensus 126 ~~vFG~Vv~G~dvv~~I~~ 144 (165)
T 2z6w_A 126 HVVFGHVIEGMDVVKKIES 144 (165)
T ss_dssp SCEEEEEEECHHHHHHHHH
T ss_pred eeEEEEEEcCHHHHHHHHh
Confidence 9999999999999999975
No 15
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=100.00 E-value=1.2e-36 Score=282.11 Aligned_cols=138 Identities=24% Similarity=0.317 Sum_probs=120.6
Q ss_pred ceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh-----------cCCCCCcEeeee-CCcEEEecCCC-CC
Q 013730 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ-----------RHFYDGMEIQRA-DGFVVQTGDPE-GP 304 (437)
Q Consensus 238 ratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~-----------~GfYdG~~f~RV-~gfVIQ~GDp~-g~ 304 (437)
+..|.|++.+.+ |+.|+|+|+||++.||+||+||+.||+ .+||||+.|||| ++|||||||+. ++
T Consensus 9 ~~~vf~di~i~~---t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~ 85 (179)
T 2wfi_A 9 RPRCFFDIAINN---QPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGN 85 (179)
T ss_dssp CCEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSS
T ss_pred CCeEEEEEEECC---ccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCC
Confidence 557888887665 589999999999999999999999996 679999999999 99999999986 66
Q ss_pred CCCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCC
Q 013730 305 AEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTP 384 (437)
Q Consensus 305 g~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~ 384 (437)
+.|+ .++|+.+|+++. ..++|+.+|+|||||+ +||+++||||| ++
T Consensus 86 g~gg---------------------~si~g~~f~dE~-----~~~~h~~~G~lsMAn~--gp~tngSQFfI-------t~ 130 (179)
T 2wfi_A 86 GRGG---------------------ESIYGGFFEDES-----FAVKHNKEFLLSMANR--GKDTNGSQFFI-------TT 130 (179)
T ss_dssp SSCC---------------------CCTTSSCBCCCC-----CCSCCCSTTEEEECCS--STTCBCSCEEE-------ES
T ss_pred CCCC---------------------CcccCCcccccc-----cCcCcCCCeEEEEEeC--CCCCcceEEEE-------Ec
Confidence 6553 467888887764 3678899999999998 79999999999 45
Q ss_pred CCCCCCCCCccEEEEEecChHHHHhhhcC
Q 013730 385 SNANILDGRYAVFGYVTENEGLLADVKVG 413 (437)
Q Consensus 385 ~g~~~LDG~ytVFG~VveG~dVL~kI~~g 413 (437)
++.++|||+|+|||+|++|||||++|+..
T Consensus 131 ~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~ 159 (179)
T 2wfi_A 131 KPTPHLDGHHVVFGQVISGQEVVREIENQ 159 (179)
T ss_dssp SCCGGGTTTSCEEEEEEECHHHHHHHHTC
T ss_pred CCCcccCCCeeEEEEEeCCHHHHHHHHcC
Confidence 66789999999999999999999999764
No 16
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=100.00 E-value=1.8e-36 Score=280.32 Aligned_cols=139 Identities=24% Similarity=0.335 Sum_probs=121.2
Q ss_pred CceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhc--------C---CCCCcEeeee-CCcEEEecCCC-C
Q 013730 237 GRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQR--------H---FYDGMEIQRA-DGFVVQTGDPE-G 303 (437)
Q Consensus 237 GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~--------G---fYdG~~f~RV-~gfVIQ~GDp~-g 303 (437)
.+..|.|++.+.+ ++.|+|+|+||++.||+||+||+.||+. | ||||+.|||| ++|||||||+. +
T Consensus 5 ~~~~v~~di~i~~---~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~ 81 (177)
T 1a58_A 5 DRRRVFLDVTIDG---NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKG 81 (177)
T ss_dssp GCEEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSS
T ss_pred CCcEEEEEEEECC---EeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCC
Confidence 3567888887765 5899999999999999999999999984 4 9999999999 99999999986 6
Q ss_pred CCCCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCC
Q 013730 304 PAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELT 383 (437)
Q Consensus 304 ~g~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt 383 (437)
++.|+ .++|+.+|+++.+ .++|+.+|+|||||+ +||+++||||| +
T Consensus 82 ~g~gg---------------------~si~g~~f~dE~~-----~~~h~~~G~lsmAn~--gp~tngSQFfI-------t 126 (177)
T 1a58_A 82 DGTGG---------------------ESIYGGMFDDEEF-----VMKHDEPFVVSMANK--GPNTNGSQFFI-------T 126 (177)
T ss_dssp SSSCC---------------------CCTTSSCBCCCCC-----CSCCCSSSEEEECCS--STTCBCSCEEE-------E
T ss_pred CCCCC---------------------CcccCCcccCccc-----CcccCCCeEEEEeeC--CCCCceeEEEE-------E
Confidence 66653 4678888887643 678999999999998 79999999999 4
Q ss_pred CCCCCCCCCCccEEEEEecChHHHHhhhcC
Q 013730 384 PSNANILDGRYAVFGYVTENEGLLADVKVG 413 (437)
Q Consensus 384 ~~g~~~LDG~ytVFG~VveG~dVL~kI~~g 413 (437)
+++.++|||+|+|||+|++|||||++|+..
T Consensus 127 ~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~ 156 (177)
T 1a58_A 127 TTPAPHLNNIHVVFGKVVSGQEVVTKIEYL 156 (177)
T ss_dssp SSCCGGGTTTSCEEEEEEECHHHHHHHHTS
T ss_pred CCCCCccCCCEEEEEEEEcCHHHHHHHHhC
Confidence 566789999999999999999999999764
No 17
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=100.00 E-value=1.7e-36 Score=279.47 Aligned_cols=138 Identities=27% Similarity=0.434 Sum_probs=118.9
Q ss_pred ceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh--cCC-CCCcEeeee-CCcEEEecCCC-CCCCCCcCCC
Q 013730 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RHF-YDGMEIQRA-DGFVVQTGDPE-GPAEGFIDPS 312 (437)
Q Consensus 238 ratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YdG~~f~RV-~gfVIQ~GDp~-g~g~G~~dp~ 312 (437)
+..|.|++.+.+ |+.|+|+|+||++.||+||+||++||+ +|| |||+.|||| ++|||||||+. ++|.|+
T Consensus 10 ~~~v~~di~i~~---t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg---- 82 (172)
T 2cmt_A 10 LPRVFFDIRIGN---GDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGG---- 82 (172)
T ss_dssp CCEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCC----
T ss_pred CCEEEEEEEECC---eecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCC----
Confidence 356777776654 589999999999999999999999998 489 999999999 99999999986 566553
Q ss_pred CCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCC
Q 013730 313 TEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDG 392 (437)
Q Consensus 313 t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG 392 (437)
.++|+.+|+++. ..++|+.+|+||||++ +||+++||||| ++++.++|||
T Consensus 83 -----------------~si~g~~f~dE~-----~~l~h~~~G~lsmA~~--gp~t~gSQFfI-------t~~~~~~LDg 131 (172)
T 2cmt_A 83 -----------------KSIYGRKFDDEN-----FQLRHEGFGVLSMANS--GPNTNGSQFFI-------CTTKCDWLDG 131 (172)
T ss_dssp -----------------CBTTBSCBCCCC-----CCSCCCSTTEEEECCS--STTCBCSCEEE-------ESSCCGGGTT
T ss_pred -----------------CccCCCcccccc-----cCcccCCceEEEEeeC--CCCCcccEEEE-------ECCCCCccCC
Confidence 456777777653 3788889999999998 79999999999 4566799999
Q ss_pred CccEEEEEecChHHHHhhhcC
Q 013730 393 RYAVFGYVTENEGLLADVKVG 413 (437)
Q Consensus 393 ~ytVFG~VveG~dVL~kI~~g 413 (437)
+|+|||+|++|||||++|+..
T Consensus 132 ~~tvFG~Vv~G~dvv~~I~~~ 152 (172)
T 2cmt_A 132 KHVVFGRVVDGQNVVKKMESV 152 (172)
T ss_dssp TSCEEEEEEECHHHHHHGGGG
T ss_pred CeeEEEEEEcCHHHHHHHHhC
Confidence 999999999999999999753
No 18
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=100.00 E-value=2.7e-36 Score=279.28 Aligned_cols=138 Identities=26% Similarity=0.395 Sum_probs=120.7
Q ss_pred ceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCC--------CCCcEeeee-CCcEEEecCCC-CCCCC
Q 013730 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHF--------YDGMEIQRA-DGFVVQTGDPE-GPAEG 307 (437)
Q Consensus 238 ratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~Gf--------YdG~~f~RV-~gfVIQ~GDp~-g~g~G 307 (437)
+..|.|++.+.+ |+.|+|+|+||++.||+||+||++||+.+| |||+.|||+ ++|||||||+. ++|.|
T Consensus 10 ~~~v~~di~i~~---t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~g 86 (177)
T 1mzw_A 10 NPVVFFDVSIGG---QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTG 86 (177)
T ss_dssp CCEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCC
T ss_pred CCEEEEEEEECC---eeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCC
Confidence 456788876654 589999999999999999999999999998 999999999 99999999986 66665
Q ss_pred CcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCC
Q 013730 308 FIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNA 387 (437)
Q Consensus 308 ~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~ 387 (437)
+ .++|+.+|+++. ..++|+.+|+||||++ +||+++||||| ++++.
T Consensus 87 g---------------------~si~g~~f~dE~-----~~l~h~~~G~lsmAn~--gp~tngSQFfI-------t~~~~ 131 (177)
T 1mzw_A 87 V---------------------ASIYRGPFADEN-----FKLRHSAPGLLSMANS--GPSTNGCQFFI-------TCSKC 131 (177)
T ss_dssp C---------------------CCTTSSCBCCCC-----CCSCCCSTTEEEECCS--STTCBCSCEEE-------ESSCC
T ss_pred C---------------------CccCCCcccCcc-----cccccCCCCEEEEccC--CCCCcceEEEE-------ECCCC
Confidence 3 467887787753 3688889999999998 79999999999 45667
Q ss_pred CCCCCCccEEEEEecChHHHHhhhcC
Q 013730 388 NILDGRYAVFGYVTENEGLLADVKVG 413 (437)
Q Consensus 388 ~~LDG~ytVFG~VveG~dVL~kI~~g 413 (437)
++|||+|+|||+|++|||||++|+..
T Consensus 132 ~~LDg~~~VFG~Vv~G~dvv~~I~~~ 157 (177)
T 1mzw_A 132 DWLDGKHVVFGKIIDGLLVMRKIENV 157 (177)
T ss_dssp GGGTTTSCEEEEEEECHHHHHHHHTS
T ss_pred CccCCCeeEEEEEeCCHHHHHHHHhC
Confidence 99999999999999999999999764
No 19
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=100.00 E-value=2.3e-36 Score=278.75 Aligned_cols=137 Identities=27% Similarity=0.398 Sum_probs=119.0
Q ss_pred ceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhc--C--------CCCCcEeeee-CCcEEEecCCC-CCC
Q 013730 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQR--H--------FYDGMEIQRA-DGFVVQTGDPE-GPA 305 (437)
Q Consensus 238 ratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~--G--------fYdG~~f~RV-~gfVIQ~GDp~-g~g 305 (437)
+..|.|++.+.+ ++.|+|+|+||++.||+||+||+.||+. | ||||+.|||| ++|||||||+. ++|
T Consensus 3 ~~~v~~di~i~~---~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G 79 (173)
T 2igv_A 3 RSKVFFDITIGG---KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG 79 (173)
T ss_dssp CCEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred CCEEEEEEEECC---EecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCC
Confidence 356788887665 4899999999999999999999999986 6 8999999999 99999999986 566
Q ss_pred CCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCC
Q 013730 306 EGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPS 385 (437)
Q Consensus 306 ~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~ 385 (437)
.|+ .++|+.+|+++. ..++|+.+|+||||++ +||+++||||| +++
T Consensus 80 ~gg---------------------~siyg~~f~dE~-----~~l~h~~~G~lsmAn~--gp~tngSQFfI-------t~~ 124 (173)
T 2igv_A 80 TGG---------------------ESIYGEKFPDEN-----FKEKHTGPGVLSMANA--GPNTNGSQFFL-------CTV 124 (173)
T ss_dssp SCC---------------------CBTTBSCBCCCC-----CCSCCCSTTEEEECCS--STTCBSSCEEE-------ESS
T ss_pred CCC---------------------CccCCCcccCcc-----cccCCCCCeEEEEeeC--CCCCcceEEEE-------EcC
Confidence 653 456777777653 4788888999999998 79999999999 456
Q ss_pred CCCCCCCCccEEEEEecChHHHHhhhc
Q 013730 386 NANILDGRYAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 386 g~~~LDG~ytVFG~VveG~dVL~kI~~ 412 (437)
+.++|||+|+|||+|++|||||++|+.
T Consensus 125 ~~~~LDg~~~vFG~Vv~G~dvv~~I~~ 151 (173)
T 2igv_A 125 KTEWLDGKHVVFGRVVEGLDVVKAVES 151 (173)
T ss_dssp CCGGGTTTSCEEEEEEECHHHHHHHHT
T ss_pred CccccCCCeeEEEEEecCHHHHHHHHh
Confidence 678999999999999999999999975
No 20
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=100.00 E-value=3e-36 Score=278.01 Aligned_cols=136 Identities=28% Similarity=0.414 Sum_probs=118.1
Q ss_pred eEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhH--hcCC-CCCcEeeee-CCcEEEecC-CCCCCCCCcCCCC
Q 013730 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLV--QRHF-YDGMEIQRA-DGFVVQTGD-PEGPAEGFIDPST 313 (437)
Q Consensus 239 atV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv--~~Gf-YdG~~f~RV-~gfVIQ~GD-p~g~g~G~~dp~t 313 (437)
..|.|.+.+.+ ++.|+|+|+||++.||+||+||++|| ++|| |||+.|||+ ++||||||| +.+++.|+
T Consensus 12 ~~v~~di~i~~---t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg----- 83 (172)
T 2haq_A 12 AKVYFDVMIDS---EPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGG----- 83 (172)
T ss_dssp EEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCC-----
T ss_pred CeEEEEEEECC---EecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCC-----
Confidence 45677776654 58999999999999999999999999 7899 999999999 999999999 56776663
Q ss_pred CcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCC
Q 013730 314 EKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGR 393 (437)
Q Consensus 314 ~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ 393 (437)
.++|+.+|+++ ...++|. +|+||||++ +||+++||||| ++++.++|||+
T Consensus 84 ----------------~si~g~~f~dE-----~~~l~h~-~G~lsmAn~--gp~tngSQFfI-------t~~~~~~LDg~ 132 (172)
T 2haq_A 84 ----------------KSIYGEKFADE-----NLNVKHF-VGALSMANA--GPNTNGSQFFI-------TTAPTPWLDGR 132 (172)
T ss_dssp ----------------CCSSSSCBCCC-----CCCSCCC-TTEEEECCS--STTCBCSCEEE-------ESSCCGGGTTT
T ss_pred ----------------ccccCCcccCc-----CCCcccC-ceEEEEccC--CCCCcccEEEE-------ECCCCCccCCC
Confidence 46788777765 3467777 999999998 79999999999 45667899999
Q ss_pred ccEEEEEecChHHHHhhhcC
Q 013730 394 YAVFGYVTENEGLLADVKVG 413 (437)
Q Consensus 394 ytVFG~VveG~dVL~kI~~g 413 (437)
|+|||+|++|||||++|+..
T Consensus 133 ~~vFG~Vv~G~dvv~~I~~~ 152 (172)
T 2haq_A 133 HVVFGKVLDGMDVVLRIEKT 152 (172)
T ss_dssp SCEEEEEEECHHHHHHHHTS
T ss_pred EeEEEEEeCCHHHHHHHHhC
Confidence 99999999999999999764
No 21
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=100.00 E-value=1.7e-36 Score=278.86 Aligned_cols=139 Identities=25% Similarity=0.367 Sum_probs=120.5
Q ss_pred ceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh-cCC--------CCCcEeeee-CCcEEEecCCC-CCCC
Q 013730 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ-RHF--------YDGMEIQRA-DGFVVQTGDPE-GPAE 306 (437)
Q Consensus 238 ratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~-~Gf--------YdG~~f~RV-~gfVIQ~GDp~-g~g~ 306 (437)
+..|.|++.+.+ ++.|+|+|+||++.||+||+||++||+ .|| |||+.|||| ++|||||||+. +++.
T Consensus 3 ~~~v~~di~i~~---~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~ 79 (170)
T 1qng_A 3 RSKVFFDISIDN---SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS 79 (170)
T ss_dssp SCEEEEEEEESS---SEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred CCEEEEEEeECC---EeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEEcCCccCCCCC
Confidence 456888887665 489999999999999999999999998 589 999999999 99999999986 6666
Q ss_pred CCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCC
Q 013730 307 GFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSN 386 (437)
Q Consensus 307 G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g 386 (437)
|+ .++|+.+|+++. ..++|+.+|+||||++ +||+++||||| |+++
T Consensus 80 gg---------------------~si~g~~f~dE~-----~~l~h~~~G~lsmAn~--gp~tngSQFfI-------t~~~ 124 (170)
T 1qng_A 80 GG---------------------ESIYGRSFTDEN-----FNMKHDQPGLLSMANA--GPNTNSSQFFI-------TLVP 124 (170)
T ss_dssp CC---------------------CBTTBSCBCCCC-----CCSCCCSTTEEEECCS--STTCBCSCEEE-------ESSC
T ss_pred CC---------------------ccccCCcccccc-----cccccCCCCEEEEeec--CCCCcccEEEE-------ECCC
Confidence 53 457777777653 4678889999999987 79999999999 5566
Q ss_pred CCCCCCCccEEEEEecChHHHHhhhcCC
Q 013730 387 ANILDGRYAVFGYVTENEGLLADVKVGD 414 (437)
Q Consensus 387 ~~~LDG~ytVFG~VveG~dVL~kI~~gD 414 (437)
.++|||+|+|||+|++|||||++|+...
T Consensus 125 ~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~ 152 (170)
T 1qng_A 125 CPWLDGKHVVFGKVIEGMNVVREMEKEG 152 (170)
T ss_dssp CGGGTTTSCEEEEEEECHHHHHHHHTTC
T ss_pred CcccCCCeeEEEEEECCHHHHHHHHhCC
Confidence 7999999999999999999999998653
No 22
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-36 Score=281.65 Aligned_cols=139 Identities=24% Similarity=0.337 Sum_probs=120.5
Q ss_pred CceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh-----------cCCCCCcEeeee-CCcEEEecCCC-C
Q 013730 237 GRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ-----------RHFYDGMEIQRA-DGFVVQTGDPE-G 303 (437)
Q Consensus 237 GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~-----------~GfYdG~~f~RV-~gfVIQ~GDp~-g 303 (437)
.+..|.|++.+.+ |+.|+|+|+||++.||+||+||+.||+ .+||||+.|||| ++|||||||+. +
T Consensus 18 ~~~~vf~di~i~~---t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~ 94 (192)
T 2he9_A 18 GSPQCHFDIEINR---EPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEG 94 (192)
T ss_dssp -CCEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTS
T ss_pred CCCeEEEEEEECC---EecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCC
Confidence 3557888887664 589999999999999999999999995 689999999999 99999999986 6
Q ss_pred CCCCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCC
Q 013730 304 PAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELT 383 (437)
Q Consensus 304 ~g~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt 383 (437)
+|.|+ .++|+.+|+++. ..++|+.+|+||||++ +||+++||||| |
T Consensus 95 ~G~gg---------------------~siyg~~f~dE~-----~~l~h~~~G~lsMAn~--gp~tngSQFFI-------t 139 (192)
T 2he9_A 95 NGKGG---------------------ESIYGGYFKDEN-----FILKHDRAFLLSMANR--GKHTNGSQFFI-------T 139 (192)
T ss_dssp SSSCC---------------------CCTTSSCBCCCC-----CCSCCCSTTEEEECCS--STTCBCSCEEE-------E
T ss_pred CCCCC---------------------CcccCCcccCcc-----ccCCCCCCeEEEEEeC--CCCCcceEEEE-------E
Confidence 66553 467888887764 3678899999999998 79999999999 4
Q ss_pred CCCCCCCCCCccEEEEEecChHHHHhhhcC
Q 013730 384 PSNANILDGRYAVFGYVTENEGLLADVKVG 413 (437)
Q Consensus 384 ~~g~~~LDG~ytVFG~VveG~dVL~kI~~g 413 (437)
+++.++|||+|+|||+|++|||||++|+..
T Consensus 140 ~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~ 169 (192)
T 2he9_A 140 TKPAPHLDGVHVVFGLVISGFEVIEQIENL 169 (192)
T ss_dssp SSCCGGGTTTSCEEEEEEECHHHHHHHHTS
T ss_pred cCCCcccCCCccEEEEEEeCHHHHHHHHcC
Confidence 566789999999999999999999999753
No 23
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=100.00 E-value=3.2e-36 Score=275.87 Aligned_cols=134 Identities=30% Similarity=0.430 Sum_probs=110.7
Q ss_pred CCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCC
Q 013730 236 KGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTE 314 (437)
Q Consensus 236 ~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~ 314 (437)
+|+..|.|++ +.|+|+|+||++.||+||+||++||+.|||||+.|||| ++|||||||+.+.+.+.
T Consensus 2 ~~~~~v~~~t--------~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~~~------ 67 (166)
T 1v9t_A 2 KGDPHVLLTT--------SAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQK------ 67 (166)
T ss_dssp CCSCEEEEEE--------TTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTCCBC------
T ss_pred CCCeEEEEEe--------CCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEcCCcCcCCCCC------
Confidence 4677889987 89999999999999999999999999999999999999 99999999998754321
Q ss_pred cCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCC-
Q 013730 315 KTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGR- 393 (437)
Q Consensus 315 ~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~- 393 (437)
.|+.+++++. .+.+ +|.+|+|||||+ .+||+++|||||++ +..++||++
T Consensus 68 -----------------~~g~~~~dE~----~~~l-~~~~G~lsmA~~-~~p~t~gSQFfI~~-------~~~~~Ld~~~ 117 (166)
T 1v9t_A 68 -----------------KPNPPIKNEA----DNGL-RNTRGTIAMART-ADKDSATSQFFINV-------ADNAFLDHGQ 117 (166)
T ss_dssp -----------------CCCCCBCCCG----GGSC-CCCTTEEEECCC-SSTTCBCSCEEEES-------SCCGGGSCCS
T ss_pred -----------------CCCCcccccc----cccc-cCCceEEEEeec-CCCCCccceEEEEe-------CCccccCCcc
Confidence 1222333331 1223 578999999997 46999999999954 556889998
Q ss_pred ----ccEEEEEecChHHHHhhhcC
Q 013730 394 ----YAVFGYVTENEGLLADVKVG 413 (437)
Q Consensus 394 ----ytVFG~VveG~dVL~kI~~g 413 (437)
|+|||+|++|||||++|+..
T Consensus 118 ~~~~~tvFG~Vv~G~dvv~~I~~~ 141 (166)
T 1v9t_A 118 RDFGYAVFGKVVKGMDVADKISQV 141 (166)
T ss_dssp SCCCCCEEEEEEECHHHHHHHHTS
T ss_pred CcCCeeEEEEEecCHHHHHHHHhC
Confidence 99999999999999999754
No 24
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=100.00 E-value=2.4e-36 Score=290.79 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=120.5
Q ss_pred cCCcCCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhc-----------------C--C-CCCcEeee
Q 013730 231 SMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQR-----------------H--F-YDGMEIQR 290 (437)
Q Consensus 231 ~~P~l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~-----------------G--f-YdG~~f~R 290 (437)
.+|....+..|.|++.+.+ |+.|+|+|+||++.||+||+||+.||+. | | |||+.|||
T Consensus 7 ~~p~~~~~p~v~~di~i~~---t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHR 83 (234)
T 2ose_A 7 DLPNSGKNPRVYMDIVLNN---EIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHN 83 (234)
T ss_dssp SCCCCCSSCEEEEEEEETT---EEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCE
T ss_pred ccCcCCCCCEEEEEEEECC---cccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEE
Confidence 5777778889999987764 5899999999999999999999999983 5 8 99999999
Q ss_pred e-CCcEEEecC-CCCCCCCCcCCCCCcCcCCCccccccCCCCCCCCCc-----hhhccccccCCCCCCCCCeEEEeec--
Q 013730 291 A-DGFVVQTGD-PEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGAT-----LEELGLYKAQTKLPFNAFGTMAMAR-- 361 (437)
Q Consensus 291 V-~gfVIQ~GD-p~g~g~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t-----~ed~G~~~~~p~Lp~~~~GtLaMAr-- 361 (437)
| ++||||||| +.++|.|+ .++|+.+ |+ ...++|+.+|+|||||
T Consensus 84 Vi~~FmiQgGd~~~g~G~Gg---------------------~siyg~~~~p~~f~-------~~~l~h~~~G~lsMAn~~ 135 (234)
T 2ose_A 84 VLHNNYIVSGDIYNSNGSSA---------------------GTVYCDEPIPPVFG-------DYFYPHESKGLLSLVPYT 135 (234)
T ss_dssp EETTTEEEECCCC----CCC---------------------CCTTTTCCBCCCCC-------SCCCCSCSTTEEEECCEE
T ss_pred EECCCEEEcCCccCCCCCCC---------------------ccccCCccCccccc-------CcCccCCCCCEEEEeccc
Confidence 9 999999999 56777764 2344433 32 2367788999999999
Q ss_pred --CCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhhc
Q 013730 362 --DEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 362 --s~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~~ 412 (437)
+ +||+++|||||++.+...+ ++.++|||+|+|||+|++|||||++|+.
T Consensus 136 ~~~--gpntngSQFFIt~~~~~~~-~g~p~LDg~~tVFG~Vv~GmdVv~~I~~ 185 (234)
T 2ose_A 136 DES--GNRYYDSTFMITLDDIRPS-NVLDELDRDQVVIGQVYGGLDVLDKINS 185 (234)
T ss_dssp CTT--SCEEBCSCEEEESSCCCTT-SSGGGSCTTSEEEEEEEECHHHHHHHHH
T ss_pred ccC--CCCCccceEEEEecCcccc-CCCcccCCCeeEEEEEeCCHHHHHHHHh
Confidence 5 7999999999987664322 5589999999999999999999999975
No 25
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=100.00 E-value=3.8e-36 Score=280.44 Aligned_cols=140 Identities=26% Similarity=0.375 Sum_probs=120.3
Q ss_pred CCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh--cCC--------CCCcEeeee-CCcEEEecCCC-C
Q 013730 236 KGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RHF--------YDGMEIQRA-DGFVVQTGDPE-G 303 (437)
Q Consensus 236 ~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf--------YdG~~f~RV-~gfVIQ~GDp~-g 303 (437)
..+..|.|++.+.+ ++.|+|+|+||++.||+||+||+.||+ +|| |||+.|||| ++|||||||+. +
T Consensus 17 ~~~~~v~~di~i~~---t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~ 93 (186)
T 2poy_A 17 QGNPVVYFDISIGQ---TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRG 93 (186)
T ss_dssp -CCCEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTS
T ss_pred CCCCEEEEEEeECC---EecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCC
Confidence 44567888887664 589999999999999999999999996 689 999999999 99999999986 6
Q ss_pred CCCCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCC
Q 013730 304 PAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELT 383 (437)
Q Consensus 304 ~g~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt 383 (437)
+|.|+ .++|+.+|+++. ..++|+.+|+||||++ +||+++||||| +
T Consensus 94 ~G~gg---------------------~si~g~~f~dE~-----~~l~h~~~G~lsMAn~--gpntngSQFFI-------t 138 (186)
T 2poy_A 94 DGTGG---------------------ESIYGSKFRDEN-----FVYTHDAPFLLSMANA--GPNTNGSQFFI-------T 138 (186)
T ss_dssp SSSCC---------------------CCTTC-CBCCCC-----CCSCCCSTTEEEECCS--STTCBCSCEEE-------E
T ss_pred CCCCC---------------------CccCCCcccCcc-----cccccCCCcEEEEeeC--CCCCcccEEEE-------E
Confidence 66553 467888887763 3688888999999998 79999999999 4
Q ss_pred CCCCCCCCCCccEEEEEecChHHHHhhhcC
Q 013730 384 PSNANILDGRYAVFGYVTENEGLLADVKVG 413 (437)
Q Consensus 384 ~~g~~~LDG~ytVFG~VveG~dVL~kI~~g 413 (437)
+++.++|||+|+|||+|++|||||++|+..
T Consensus 139 ~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~ 168 (186)
T 2poy_A 139 TVPCPWLDGKHVVFGKVLEGMEVVKSIEKC 168 (186)
T ss_dssp SSCCGGGTTTSCEEEEEEECHHHHHHHHHT
T ss_pred CCCCcccCCCeeEEEEEecCHHHHHHHHhC
Confidence 556799999999999999999999999764
No 26
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=100.00 E-value=6.8e-36 Score=278.49 Aligned_cols=150 Identities=30% Similarity=0.453 Sum_probs=124.5
Q ss_pred cccCCcCCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCC
Q 013730 229 YQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEG 307 (437)
Q Consensus 229 y~~~P~l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G 307 (437)
|...|+.. ..|.|+| +.|+|+|+||++.||+||+||++||+.|||||+.|||| ++|||||||+.+++.|
T Consensus 17 ~~~~~~~~--~~V~l~T--------~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~g 86 (185)
T 2hq6_A 17 RGSEPPTN--GKVLLKT--------TAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSG 86 (185)
T ss_dssp TTCCCCCB--CEEEEEE--------TTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEECCTTSSSSC
T ss_pred cccCCCCC--CEEEEEe--------CCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEcCCCCCCCCC
Confidence 44445543 3577776 78999999999999999999999999999999999999 9999999999887766
Q ss_pred CcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCC
Q 013730 308 FIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNA 387 (437)
Q Consensus 308 ~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~ 387 (437)
+ .++|+.+|+++. .+.++|+.+|+|||||+ ++|+++|||||+ +++.
T Consensus 87 g---------------------~si~g~~~~dE~----~~~l~h~~~G~lsMA~~--g~~s~gSQFFIt-------~~~~ 132 (185)
T 2hq6_A 87 G---------------------ESIYGAPFKDEF----HSRLRFNRRGLVAMANA--GSHDNGSQFFFT-------LGRA 132 (185)
T ss_dssp C---------------------CCTTSSCBCCCC----BTTBCSCSSSEEEECCS--STTCBCSCEEEE-------SSCC
T ss_pred C---------------------CcccCCcccccc----ccCcccCCCeEEEEccC--CCCCccceEEEE-------CCCC
Confidence 4 457777777652 35688899999999998 689999999994 5567
Q ss_pred CCCCCCccEEEEEecChHHH--HhhhcC-----C------ceEEEEEec
Q 013730 388 NILDGRYAVFGYVTENEGLL--ADVKVG-----D------VIQSIQVVS 423 (437)
Q Consensus 388 ~~LDG~ytVFG~VveG~dVL--~kI~~g-----D------~I~Sa~Vv~ 423 (437)
++|||+|+|||+|+ |++|+ ++|+.. | +|+++.|++
T Consensus 133 ~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~~v~~ 180 (185)
T 2hq6_A 133 DELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLF 180 (185)
T ss_dssp GGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEEEEEE
T ss_pred CccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEEEEeC
Confidence 89999999999999 88875 566532 1 788888764
No 27
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=100.00 E-value=6.7e-36 Score=279.86 Aligned_cols=131 Identities=31% Similarity=0.483 Sum_probs=112.4
Q ss_pred ceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhH---------------hcCCCCCcEeeee-CCcEEEecCC
Q 013730 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLV---------------QRHFYDGMEIQRA-DGFVVQTGDP 301 (437)
Q Consensus 238 ratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv---------------~~GfYdG~~f~RV-~gfVIQ~GDp 301 (437)
...|.|.+ +.|+|+|+||++.||+||+||+.|| +.+||||+.|||| ++|||||||+
T Consensus 23 ~~~v~l~t--------~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~ 94 (191)
T 1w74_A 23 TATATLHT--------NRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDP 94 (191)
T ss_dssp SEEEEEEE--------TTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCT
T ss_pred CeEEEEEe--------cceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCC
Confidence 35677776 8999999999999999999999999 4689999999999 9999999999
Q ss_pred CCCCCCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCC
Q 013730 302 EGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESE 381 (437)
Q Consensus 302 ~g~g~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~ 381 (437)
.++|.|+ |+.+|+++ ..+.++|+.+|+|||||+ +||+++|||||
T Consensus 95 ~g~G~gg------------------------~g~~f~dE----~~~~l~h~~~G~lsMAn~--gpntngSQFFI------ 138 (191)
T 1w74_A 95 TGTGRGG------------------------PGYKFADE----FHPELQFDKPYLLAMANA--GPGTNGSQFFI------ 138 (191)
T ss_dssp TSSSSCC------------------------SSCCBCCC----CCTTCCSCSSSEEEECCS--STTCBSSCEEE------
T ss_pred CCCCCCC------------------------CCCccccc----cccCCCcCCCcEEEEeeC--CCCCccceEEE------
Confidence 8877663 23334333 135678899999999998 69999999999
Q ss_pred CCCCCCCCCCCCccEEEEEec--ChHHHHhhhcC
Q 013730 382 LTPSNANILDGRYAVFGYVTE--NEGLLADVKVG 413 (437)
Q Consensus 382 lt~~g~~~LDG~ytVFG~Vve--G~dVL~kI~~g 413 (437)
|+++.++|||+|+|||+|++ |||||++|+..
T Consensus 139 -t~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~ 171 (191)
T 1w74_A 139 -TVGKTPHLNRRHTIFGEVIDAESQRVVEAISKT 171 (191)
T ss_dssp -ESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTS
T ss_pred -EcCCCcccCCCeeEEEEEEECCCHHHHHHHHcC
Confidence 55667899999999999999 99999999764
No 28
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=100.00 E-value=1.5e-36 Score=279.72 Aligned_cols=139 Identities=24% Similarity=0.347 Sum_probs=99.3
Q ss_pred EEEEEEEec--CCCCceeeeEEEEEcCCCChHHHHHHHHhHh--cCC-CCCcEeeee-CCcEEEecC-CCCCCCCCcCCC
Q 013730 240 TVDMKVKVK--DNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RHF-YDGMEIQRA-DGFVVQTGD-PEGPAEGFIDPS 312 (437)
Q Consensus 240 tV~~~~~~~--~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YdG~~f~RV-~gfVIQ~GD-p~g~g~G~~dp~ 312 (437)
.|.|++.+. +...|+.|+|+|+||++.||+||+||++||+ .|| |||+.|||| ++||||||| +.++|.|+
T Consensus 4 ~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg---- 79 (172)
T 2c3b_A 4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGG---- 79 (172)
T ss_dssp CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC-------------
T ss_pred EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCC----
Confidence 466666666 6777899999999999999999999999999 889 999999999 999999999 77777664
Q ss_pred CCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCC
Q 013730 313 TEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDG 392 (437)
Q Consensus 313 t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG 392 (437)
.++|+.+|+++ .+.+.|+.+|+|||||+ +||+++|||||+ ++..++|||
T Consensus 80 -----------------~si~g~~f~dE-----~~~~~h~~~G~lsmA~~--gp~t~gSQFfIt-------~~~~~~LDg 128 (172)
T 2c3b_A 80 -----------------RSIYGDKFADE-----NFSRKHDKKGILSMANA--GPNTNGSQFFIT-------TAVTSWLDG 128 (172)
T ss_dssp -----------------------------------CHHHHHTCEEEEC-----------CEEEE-------CSCCTTCCS
T ss_pred -----------------cccCCCcccCc-----ccccccCCCeEEEEeeC--CCCCcccEEEEE-------CCCCCccCC
Confidence 45788777765 34677899999999998 799999999994 556789999
Q ss_pred CccEEEEEec--ChHHHHhhhcC
Q 013730 393 RYAVFGYVTE--NEGLLADVKVG 413 (437)
Q Consensus 393 ~ytVFG~Vve--G~dVL~kI~~g 413 (437)
+|+|||+|++ |||||++|+..
T Consensus 129 ~~tvFG~Vv~~~G~dvv~~I~~~ 151 (172)
T 2c3b_A 129 KHVVFGEVADEKSYSVVKEIEAL 151 (172)
T ss_dssp CCEEEEEECSHHHHHHHHHHHTT
T ss_pred CeeEEEEEEecCCHHHHHHHHhC
Confidence 9999999999 99999999754
No 29
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=1.6e-35 Score=275.57 Aligned_cols=141 Identities=28% Similarity=0.387 Sum_probs=118.1
Q ss_pred CCcCCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhc--C-CCCCcEeeee-CCcEEEecCCC-CCCC
Q 013730 232 MPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQR--H-FYDGMEIQRA-DGFVVQTGDPE-GPAE 306 (437)
Q Consensus 232 ~P~l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~--G-fYdG~~f~RV-~gfVIQ~GDp~-g~g~ 306 (437)
.|+++.+ |.|.+.+.+ ++.|+|+|+||++.||+||+||+.||+. | ||||+.|||+ ++|||||||+. +++.
T Consensus 8 ~p~~~~~--v~~di~i~~---~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~ 82 (185)
T 4fru_A 8 GPKVTVK--VYFDLRIGD---EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGT 82 (185)
T ss_dssp EEEEEEE--EEEEEEETT---EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred CCCcCcE--EEEEEEECC---EecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCC
Confidence 3555554 445554444 5899999999999999999999999975 6 7999999999 99999999987 5655
Q ss_pred CCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCC
Q 013730 307 GFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSN 386 (437)
Q Consensus 307 G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g 386 (437)
|+ .++|+.+|+++. ..++|+.+|+|||||+ ++|+++|||||+ ++.
T Consensus 83 gg---------------------~si~g~~f~de~-----~~~~h~~~G~lsma~~--gp~t~~SQFfI~-------~~~ 127 (185)
T 4fru_A 83 GG---------------------KSIYGERFPDEN-----FKLKHYGPGWVSMANA--GKDTNGSQFFIT-------TVK 127 (185)
T ss_dssp CC---------------------CBTTBSCBCCCC-----CCSCCCSTTEEEECCS--STTCBCSCEEEE-------SSC
T ss_pred CC---------------------ccccCCccCccc-----cccCcCCCeEEEEeeC--CCCCcceEEEEE-------eCC
Confidence 53 456777777653 3678899999999998 699999999994 556
Q ss_pred CCCCCCCccEEEEEecChHHHHhhhc
Q 013730 387 ANILDGRYAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 387 ~~~LDG~ytVFG~VveG~dVL~kI~~ 412 (437)
.++|||+|+|||+|++|||||++|+.
T Consensus 128 ~~~Ld~~~~vFG~Vv~G~dvv~~I~~ 153 (185)
T 4fru_A 128 TAWLDGKHVVFGKVLEGMEVVRKVET 153 (185)
T ss_dssp CGGGTTTSCEEEEEEECHHHHHHHHT
T ss_pred CcccCCCccEEEEEeCCHHHHHHHHh
Confidence 78999999999999999999999975
No 30
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=274.67 Aligned_cols=151 Identities=26% Similarity=0.328 Sum_probs=122.8
Q ss_pred CCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhc--CC-CCCcEeeee-CCcEEEecCCC-CCCCCCc
Q 013730 235 LKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQR--HF-YDGMEIQRA-DGFVVQTGDPE-GPAEGFI 309 (437)
Q Consensus 235 l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~--Gf-YdG~~f~RV-~gfVIQ~GDp~-g~g~G~~ 309 (437)
-..+..|.|++.+.+ ++.|+|+|+||++.||+||+||++||+. || |||+.|||| ++|||||||+. +++.|+
T Consensus 19 ~~~~p~v~~di~i~~---~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg- 94 (184)
T 3rdd_A 19 GMVNPTVFFDIAVDG---EPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG- 94 (184)
T ss_dssp --CCCEEEEEEEETT---EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCC-
T ss_pred cCCCCEEEEEEeECC---EeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCC-
Confidence 345567888886655 4799999999999999999999999965 55 999999999 99999999954 555553
Q ss_pred CCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCC
Q 013730 310 DPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANI 389 (437)
Q Consensus 310 dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~ 389 (437)
.++|+.+++++. ..++|+.+|+||||++ +||+++|||||++ +..++
T Consensus 95 --------------------~si~g~~~~de~-----~~l~h~~~G~lsmA~~--gp~s~gSQFfIt~-------~~~~~ 140 (184)
T 3rdd_A 95 --------------------KSIYGEKFEDEN-----FILKHTGPGILSMANA--GPNTNGSQFFICT-------AKTEW 140 (184)
T ss_dssp --------------------CBTTBSCBCCCC-----CCSCCCSTTEEEECCS--STTCBSSCEEEES-------SCCGG
T ss_pred --------------------cccCCCcccCcc-----cccccCCCcEEEEEeC--CCCCcccEEEEEe-------CCchh
Confidence 456777777653 3678889999999998 7999999999954 55689
Q ss_pred CCCCccEEEEEecChHHHHhhhcC-----CceEEEEEec
Q 013730 390 LDGRYAVFGYVTENEGLLADVKVG-----DVIQSIQVVS 423 (437)
Q Consensus 390 LDG~ytVFG~VveG~dVL~kI~~g-----D~I~Sa~Vv~ 423 (437)
|||+|+|||+|++|||||++|+.. .....++|.+
T Consensus 141 LDg~~tVFG~Vv~G~dvv~~I~~~~~~~g~P~~~v~I~~ 179 (184)
T 3rdd_A 141 LDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIAD 179 (184)
T ss_dssp GTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEE
T ss_pred hCCCceEEEEEecCHHHHHHHHhcCCCCCCCcCCeEEEe
Confidence 999999999999999999999753 2444455543
No 31
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=3.2e-35 Score=282.61 Aligned_cols=153 Identities=25% Similarity=0.374 Sum_probs=124.8
Q ss_pred ccccCCcCCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCC
Q 013730 228 EYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAE 306 (437)
Q Consensus 228 ~y~~~P~l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~ 306 (437)
.|...|+.++ .|.|+| +.|+|+|+||++.||+||+||+.||+.|||||+.|||| ++||||||||.++|.
T Consensus 13 ~~~~~p~~~~--~V~l~T--------~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQgGdp~~~G~ 82 (232)
T 3bkp_A 13 NLYFQGSTRG--KVVLHT--------SLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGR 82 (232)
T ss_dssp GGGCCCSCBC--EEEEEE--------TTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEECCTTSSSS
T ss_pred cccccCCCCC--EEEEEE--------CCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEcCCCCCCCC
Confidence 4556666544 567776 78999999999999999999999999999999999999 999999999998877
Q ss_pred CCcCCCCCcCcCCCccccccCCCCCCC--CCchhhccccccCCCCCCCCCeEEEeecCCCCC-------------CCCcc
Q 013730 307 GFIDPSTEKTRTIPLEIMVEGEKSPFY--GATLEELGLYKAQTKLPFNAFGTMAMARDEFED-------------NSGSS 371 (437)
Q Consensus 307 G~~dp~t~~~~~iPlEi~~~g~~~piy--~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~p-------------nS~gS 371 (437)
|+ .++| +.+|+++ ..+.++|+.+|+||||++. .+ |+++|
T Consensus 83 Gg---------------------~si~~~g~~f~dE----~~~~l~h~~~G~lsMA~~g-~~~~~~~n~e~g~~~~sngS 136 (232)
T 3bkp_A 83 GG---------------------ADTTFDGKPFDVE----THPRLKFRYRGLVGVANLG-RSSKDAENDERGRSLGTNGN 136 (232)
T ss_dssp CC---------------------CCCTTTTCCBCCC----CCTTCCCCSTTEEEECCCC-----------------CBCS
T ss_pred CC---------------------CccccCCCccCCc----cccCcCcCCCeEEEEeccC-CcccccccccccccCCCcCC
Confidence 64 3456 5666654 2457889999999999982 22 79999
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHH--HHhhhcC-----------CceEEEEEecC
Q 013730 372 QVFWLLKESELTPSNANILDGRYAVFGYVTENEGL--LADVKVG-----------DVIQSIQVVSG 424 (437)
Q Consensus 372 QFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dV--L~kI~~g-----------D~I~Sa~Vv~g 424 (437)
|||| |+++.++|||+|+|||+|+ ||+| |++|... .+|.++.|+.+
T Consensus 137 QFFI-------t~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~d 194 (232)
T 3bkp_A 137 QFFI-------TLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWN 194 (232)
T ss_dssp CEEE-------ESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBCGGGCBSSCCBEEEEEEEEC
T ss_pred EEEE-------ECCCCcccCCCccEEEEEE-eCchHHHHHHHcCCcCCCCCcCCCeEEEEEEEEcC
Confidence 9999 4566789999999999999 7766 8888642 18999999863
No 32
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3.3e-35 Score=275.44 Aligned_cols=149 Identities=25% Similarity=0.328 Sum_probs=123.4
Q ss_pred CceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHh--cCC-CCCcEeeee-CCcEEEecCC-CCCCCCCcCC
Q 013730 237 GRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RHF-YDGMEIQRA-DGFVVQTGDP-EGPAEGFIDP 311 (437)
Q Consensus 237 GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YdG~~f~RV-~gfVIQ~GDp-~g~g~G~~dp 311 (437)
.+..|.|++.+.+ |+.|+|+|+||++.||+||+||++||+ .|| |||+.|||| ++|||||||+ .+++.|+
T Consensus 26 ~~p~v~~di~i~~---t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg--- 99 (193)
T 3k2c_A 26 ASGNVYFDVYANE---ESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGG--- 99 (193)
T ss_dssp CTTCEEEEEEETT---EEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCC---
T ss_pred CCCEEEEEEeECC---EEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCC---
Confidence 3455777776654 589999999999999999999999999 788 999999999 9999999994 4565553
Q ss_pred CCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCC
Q 013730 312 STEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILD 391 (437)
Q Consensus 312 ~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LD 391 (437)
.++|+.+|+++ ...++|+.+|+|+||++ ++|+++|||||+ ++..++||
T Consensus 100 ------------------~si~g~~f~dE-----~~~l~h~~~G~lsmAn~--gp~t~gSQFFIt-------~~~~~~LD 147 (193)
T 3k2c_A 100 ------------------RSIYGEKFPDE-----NFELKHTKEGILSMANC--GAHTNGSQFFIT-------LGKTQWLD 147 (193)
T ss_dssp ------------------CCTTSSCBCCC-----CCCSCCCSTTEEEECCS--STTCBCSCEEEE-------SSCCGGGT
T ss_pred ------------------cccCCCccccc-----ccccccCCCcEEEEEeC--CCCCCccEEEEE-------CCCCcccC
Confidence 46777777765 34688899999999998 699999999995 45678999
Q ss_pred CCccEEEEEecChHHHHhhhcC-----Cce--EEEEEec
Q 013730 392 GRYAVFGYVTENEGLLADVKVG-----DVI--QSIQVVS 423 (437)
Q Consensus 392 G~ytVFG~VveG~dVL~kI~~g-----D~I--~Sa~Vv~ 423 (437)
|+|+|||+|++|||||++|+.. ... +.++|.+
T Consensus 148 g~~tVFG~Vv~Gmdvv~~I~~~~t~~g~P~~~~~v~I~~ 186 (193)
T 3k2c_A 148 EKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRD 186 (193)
T ss_dssp TTSCEEEEEEECHHHHHHHHTTCCTTCCCCTTCCEEEEE
T ss_pred CCccEEEEEeCCHHHHHHHHhcCCCCCcCccCccEEEEE
Confidence 9999999999999999999752 234 4555554
No 33
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=100.00 E-value=1.8e-35 Score=270.37 Aligned_cols=124 Identities=26% Similarity=0.336 Sum_probs=103.1
Q ss_pred eeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCcCCCccccccCCCCCC
Q 013730 254 DECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPF 332 (437)
Q Consensus 254 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~~iPlEi~~~g~~~pi 332 (437)
+.|+|+|+||++.||+||+||++||+.|||||+.|||| ++|||||||+... .| ..+
T Consensus 7 ~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~-~g----------------------~~~ 63 (164)
T 1lop_A 7 NHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG-MK----------------------QKA 63 (164)
T ss_dssp TTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEETT-TE----------------------ECC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEecCCcccC-CC----------------------cCC
Confidence 89999999999999999999999999999999999999 9999999998731 12 123
Q ss_pred CCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCC--------ccEEEEEecCh
Q 013730 333 YGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGR--------YAVFGYVTENE 404 (437)
Q Consensus 333 y~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~--------ytVFG~VveG~ 404 (437)
|+.+|+++. .+.+. |.+|+|||||+ .+|||++|||||++ +..++||++ |+|||+|++||
T Consensus 64 ~g~~~~dE~----~~~l~-~~~G~lsmA~~-~~p~s~gSQFfI~~-------~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~ 130 (164)
T 1lop_A 64 TKEPIKNEA----NNGLK-NTRGTLAMART-QAPHSATAQFFINV-------VDNDFLNFSGESLQGWGYCVFAEVVDGM 130 (164)
T ss_dssp CCCCBCCCC----CSSCC-CCTTEEEECCC-SSTTCBCSCEEEES-------SCCGGGSCCSSSTTTSCCCEEEEEEECH
T ss_pred CCCcccccc----ccccc-cCccEEEEeec-CCCCCccceEEEEc-------CCccccCCccccccCCceEEEEEEecCH
Confidence 444454442 23344 67999999986 47999999999955 456789987 99999999999
Q ss_pred HHHHhhhcC
Q 013730 405 GLLADVKVG 413 (437)
Q Consensus 405 dVL~kI~~g 413 (437)
|||++|+..
T Consensus 131 dvv~~I~~~ 139 (164)
T 1lop_A 131 DEVDKIKGV 139 (164)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhC
Confidence 999999753
No 34
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=100.00 E-value=3.3e-35 Score=269.09 Aligned_cols=130 Identities=31% Similarity=0.473 Sum_probs=105.6
Q ss_pred eEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcCCCCCcEeeee-CCcEEEecCCCCCCCCCcCCCCCcCc
Q 013730 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTR 317 (437)
Q Consensus 239 atV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYdG~~f~RV-~gfVIQ~GDp~g~g~G~~dp~t~~~~ 317 (437)
..|.|+| +.|+|+|+||++.||+||+||++||+.|||||+.|||+ ++|||||||+.+.+.+.
T Consensus 4 ~~v~l~T--------~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~~~--------- 66 (167)
T 3s6m_A 4 SMVELHT--------NHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQK--------- 66 (167)
T ss_dssp CEEEEEE--------TTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEESSEETTTEEC---------
T ss_pred cEEEEEe--------CCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEeccccCCCCCC---------
Confidence 3677776 89999999999999999999999999999999999999 99999999997643211
Q ss_pred CCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCC----
Q 013730 318 TIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGR---- 393 (437)
Q Consensus 318 ~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~---- 393 (437)
.++.+++++ ..+.+ +|.+|+|||||. .+||+++|||||++ ...++||++
T Consensus 67 --------------~~~~~~~~E----~~~~l-~~~~G~lsmA~~-~~p~t~gSQFfI~~-------~~~~~Ld~~~~~~ 119 (167)
T 3s6m_A 67 --------------PTDAPIANE----ANNGL-KNDTYTIAMART-NDPHSATAQFFINV-------NDNEFLNHSSPTP 119 (167)
T ss_dssp --------------CCCCCBCCC----GGGCC-CCCTTEEEECCC-SSTTCBCSCEEEES-------SCCGGGSCCSSST
T ss_pred --------------CCCCccCCc----ccccc-cCCccEEEEecC-CCCCCccceEEEEc-------CCchhcCCccccc
Confidence 111122222 11233 468999999996 47999999999965 455789988
Q ss_pred ----ccEEEEEecChHHHHhhhc
Q 013730 394 ----YAVFGYVTENEGLLADVKV 412 (437)
Q Consensus 394 ----ytVFG~VveG~dVL~kI~~ 412 (437)
|+|||+|++|||||++|+.
T Consensus 120 ~~~~~~VFG~Vv~G~dvv~~I~~ 142 (167)
T 3s6m_A 120 QGWGYAVFGKVVEGQDIVDKIKA 142 (167)
T ss_dssp TTCCCCEEEEEEECHHHHHHHTT
T ss_pred CCCCceEEEEEEcCHHHHHHHHc
Confidence 9999999999999999975
No 35
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=5.2e-35 Score=280.60 Aligned_cols=142 Identities=23% Similarity=0.309 Sum_probs=122.4
Q ss_pred cCCCceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhcC--------CCCCcEeeee-CCcEEEecCCC-C
Q 013730 234 LLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRH--------FYDGMEIQRA-DGFVVQTGDPE-G 303 (437)
Q Consensus 234 ~l~GratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~G--------fYdG~~f~RV-~gfVIQ~GDp~-g 303 (437)
....+..|.|++.+.+ ++.|+|+|+||++.||+||+||+.||+.+ ||||+.|||| ++|||||||+. +
T Consensus 55 ~~~~~~~V~~disi~~---t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g 131 (229)
T 1z81_A 55 TNPSNPVVFMDINLGN---NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINH 131 (229)
T ss_dssp SSTTCCEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTS
T ss_pred cCCCCcEEEEEEeECC---eecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCC
Confidence 3345678888887654 47999999999999999999999999987 7999999999 99999999985 6
Q ss_pred CCCCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCC
Q 013730 304 PAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELT 383 (437)
Q Consensus 304 ~g~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt 383 (437)
+|.|+ .++|+.+|+++. ..++|+.+|+|||||+ +||+++||||| |
T Consensus 132 ~G~Gg---------------------~siyg~~f~dE~-----~~l~h~~~G~LsMAn~--gpntngSQFFI-------t 176 (229)
T 1z81_A 132 NGSGS---------------------LSIYGEKFDDEN-----FDIKHDKEGLLSMANS--GPNTNGCQFFI-------T 176 (229)
T ss_dssp SSCCC---------------------CBTTBSCCCCCC-----CCSCCCSTTEEEECCS--SSSCCCSCEEE-------E
T ss_pred CCCCC---------------------CccCCCcccccc-----cccccCCCcEEEeccC--CCCCcccEEEE-------E
Confidence 66663 457777777653 4688889999999998 69999999999 4
Q ss_pred CCCCCCCCCCccEEEEEe--cChHHHHhhhcC
Q 013730 384 PSNANILDGRYAVFGYVT--ENEGLLADVKVG 413 (437)
Q Consensus 384 ~~g~~~LDG~ytVFG~Vv--eG~dVL~kI~~g 413 (437)
++..++|||+|+|||+|+ +|||||++|+..
T Consensus 177 ~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~ 208 (229)
T 1z81_A 177 TKKCEWLDGKNVVFGRIIDNDSLLLLKKIENV 208 (229)
T ss_dssp SSCCGGGBTTBCEEEEECSHHHHHHHHHHHHS
T ss_pred CCCCcccCCCeeEEEEEEecCcHHHHHHHHhC
Confidence 566789999999999999 999999999754
No 36
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=100.00 E-value=2.5e-34 Score=288.54 Aligned_cols=148 Identities=25% Similarity=0.318 Sum_probs=127.4
Q ss_pred ceEEEEEEEecCCCCceeeeEEEEEcCCCChHHHHHHHHhHhc--------C---CCCCcEeeee-CCcEEEecCCC-CC
Q 013730 238 RATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQR--------H---FYDGMEIQRA-DGFVVQTGDPE-GP 304 (437)
Q Consensus 238 ratV~~~~~~~~~~~t~~G~I~IeLd~~~AP~Ta~NFl~Lv~~--------G---fYdG~~f~RV-~gfVIQ~GDp~-g~ 304 (437)
+..|.|+|.+.+ ++.|+|+|+||++.||+||+||+.||+. | ||+|+.|||| +||||||||+. ++
T Consensus 15 ~~~v~~~~~~~~---~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~ 91 (370)
T 1ihg_A 15 NPRVFFDVDIGG---ERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQN 91 (370)
T ss_dssp SCEEEEEEEETT---EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSS
T ss_pred CCeEEEEEEECC---EecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCC
Confidence 567888887765 4799999999999999999999999997 6 7999999999 99999999998 77
Q ss_pred CCCCcCCCCCcCcCCCccccccCCCCCCCCCchhhccccccCCCCCCCCCeEEEeecCCCCCCCCcceEEEEeCCCCCCC
Q 013730 305 AEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTP 384 (437)
Q Consensus 305 g~G~~dp~t~~~~~iPlEi~~~g~~~piy~~t~ed~G~~~~~p~Lp~~~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~ 384 (437)
|+|+ .++|+.+|+++. ..++|+.+|+|+||++ +||++|||||| |+
T Consensus 92 g~g~---------------------~~~~~~~~~~e~-----~~~~~~~~g~l~ma~~--~~~~~~sqffi-------~~ 136 (370)
T 1ihg_A 92 GTGG---------------------ESIYGEKFEDEN-----FHYKHDKEGLLSMANA--GSNTNGSQFFI-------TT 136 (370)
T ss_dssp SSCC---------------------CBTTBSCBCCCC-----CCBCCCSTTEEEECCS--STTCBCSCEEE-------ES
T ss_pred CCCC---------------------CCCCCCCcCCCc-----CCcCCCCCeEEEEeeC--CCCCCCceEEE-------eC
Confidence 7664 467888888764 3678899999999998 69999999999 55
Q ss_pred CCCCCCCCCccEEEEEecChHHHHhhhcCC----------ceEEEEEec
Q 013730 385 SNANILDGRYAVFGYVTENEGLLADVKVGD----------VIQSIQVVS 423 (437)
Q Consensus 385 ~g~~~LDG~ytVFG~VveG~dVL~kI~~gD----------~I~Sa~Vv~ 423 (437)
++.++|||+|+|||+|++||+||++|+... +|.++.+..
T Consensus 137 ~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~~~P~~~v~I~~~g~l~ 185 (370)
T 1ihg_A 137 VPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELK 185 (370)
T ss_dssp SCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESSCEEEEEEEEEC
T ss_pred CCCcccCCCceEEEEEecCHHHHHHHHcCCCCCCccceeEEEEEEEEec
Confidence 677999999999999999999999997642 556666654
No 37
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=94.72 E-value=0.049 Score=48.94 Aligned_cols=93 Identities=13% Similarity=0.199 Sum_probs=77.6
Q ss_pred hHHHHhhh---hhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHh
Q 013730 117 AVREVQKP---LEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVED 193 (437)
Q Consensus 117 ~~r~iq~~---lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~ 193 (437)
.+..|++. |.++-..+-. |.|.-+...++.-+.-|...=..|+.+.|+++|..+.++-.+|-..|++|-.++..
T Consensus 48 a~~rIk~~a~~i~~vk~lI~k---~~W~~vrn~LR~~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~ 124 (149)
T 1vyk_A 48 AAQRAKVSASEILNVKQFIDR---KAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKI 124 (149)
T ss_dssp HHHHHHHHHHHHHTTHHHHHT---TCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445444 4444455544 88999999999999999988899999999999999999999999999999999999
Q ss_pred cCccchhHHHHHHHHHhcc
Q 013730 194 RDRDAVAPKQKELLNYVGG 212 (437)
Q Consensus 194 ~d~~~~~~~~~~~L~~v~~ 212 (437)
+|........++++..+.+
T Consensus 125 kd~~~a~~~Y~~t~~~ld~ 143 (149)
T 1vyk_A 125 KSPTEAEKYYGQTVSNINE 143 (149)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999988888877666553
No 38
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=93.06 E-value=0.2 Score=44.11 Aligned_cols=93 Identities=9% Similarity=0.043 Sum_probs=75.1
Q ss_pred hhHHHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 013730 116 KAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRD 195 (437)
Q Consensus 116 ~~~r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~~d 195 (437)
+.|.+.+++|.++...+-. |-|.-+..-++.=+--|...=..|-.++++..|++|.++-.+|...|++|-.++..+|
T Consensus 28 ~~i~~~r~Rl~eL~~lI~~---~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n 104 (130)
T 3zsu_A 28 RDIEKNAERFADLEVSVAK---GDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDS 104 (130)
T ss_dssp HHHHHHHTTHHHHHHHHHT---TCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhh---cchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777788888887776 8899888777766666665656677788899999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhc
Q 013730 196 RDAVAPKQKELLNYVG 211 (437)
Q Consensus 196 ~~~~~~~~~~~L~~v~ 211 (437)
........++++....
T Consensus 105 ~~~a~k~Y~~a~adfd 120 (130)
T 3zsu_A 105 VTVAQEGFREAEADFK 120 (130)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888877777755443
No 39
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=90.67 E-value=0.22 Score=43.97 Aligned_cols=93 Identities=10% Similarity=0.154 Sum_probs=69.2
Q ss_pred hhHHHHhhhhhh-hhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHhc
Q 013730 116 KAVREVQKPLED-ITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDR 194 (437)
Q Consensus 116 ~~~r~iq~~lE~-~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 194 (437)
++|.+.+++|.+ +...+-. |-|.-+..-++.=+--|...=..|-.++.+..|++|.++-.+|...|++|-.++..+
T Consensus 30 ~~i~~ar~Rl~e~L~~lI~~---~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~ 106 (133)
T 3ls0_A 30 NPIAVARDGMEKRLQGLIAD---QNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDR 106 (133)
T ss_dssp HHHHHHHHHHHHTHHHHHHT---TCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHhhh---cchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778888888 7777766 778877755444333333333445556677788899999999999999999999999
Q ss_pred CccchhHHHHHHHHHhc
Q 013730 195 DRDAVAPKQKELLNYVG 211 (437)
Q Consensus 195 d~~~~~~~~~~~L~~v~ 211 (437)
|........++++....
T Consensus 107 n~~~a~k~Y~~a~adfd 123 (133)
T 3ls0_A 107 NGSQAKIQYQEALADFD 123 (133)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99888887777765444
No 40
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=90.21 E-value=0.62 Score=41.81 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCChHHHHHHHHhH
Q 013730 255 ECVFRIVLDGYNAPVTAGNFVDLV 278 (437)
Q Consensus 255 ~G~I~IeLd~~~AP~Ta~NFl~Lv 278 (437)
-..++++|+...||+||..|+++.
T Consensus 38 ~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 38 SAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp TEEEEECCCTTSCHHHHHHHHHTC
T ss_pred CEEEEEEEcCCCCHHHHHHHHHhC
Confidence 367999999999999999999875
No 41
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=85.91 E-value=2.7 Score=38.91 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=20.7
Q ss_pred ee-eEEEEEcCCCChHHHHHHHHhH
Q 013730 255 EC-VFRIVLDGYNAPVTAGNFVDLV 278 (437)
Q Consensus 255 ~G-~I~IeLd~~~AP~Ta~NFl~Lv 278 (437)
.| .++.+|..+.||+||+.|.++-
T Consensus 31 ~g~~~~A~Lldd~APkTcaA~~~~L 55 (188)
T 3kop_A 31 RGVTCKALLLDDVAPRTSKAVWDAL 55 (188)
T ss_dssp TTEEEEEEECTTTSHHHHHHHHHHC
T ss_pred CCeEEEEEEccccChHHHHHHHHhC
Confidence 45 4889999999999999999965
No 42
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=51.96 E-value=24 Score=30.85 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=34.9
Q ss_pred CCeEEEeecCCCCCCCCcceEEEEeCCCCCCCCCCCCCCCCccEEEEEecChHHHHhhhcCCce
Q 013730 353 AFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEGLLADVKVGDVI 416 (437)
Q Consensus 353 ~~GtLaMArs~~~pnS~gSQFFI~L~d~~lt~~g~~~LDG~ytVFG~VveG~dVL~kI~~gD~I 416 (437)
..|-|+.--. +.-|-|++++..+..++ ...-..-.+||+|.+|++.|.+++.|+.|
T Consensus 74 ~~GDIaYw~p-------gg~LaIFyg~~p~s~~e-~~~a~~v~~lGrI~~~l~~l~~v~~~~~V 129 (136)
T 1zx8_A 74 EIGDVGYWPP-------GKALCLFFGKTPMSDDK-IQPASAVNVIGKIVEGLEDLKKIKDGEKV 129 (136)
T ss_dssp CTTEEEEEGG-------GTEEEEESSCCTTCSSS-BCCSSCEEEEEEEEECGGGGGGCCTTCEE
T ss_pred CCCcEEEeCC-------CCEEEEEeCCCccccCc-cccCcCcEEEEEEccCHHHHhhCCCCceE
Confidence 3677776544 22477766653222211 11122357999999999999999988844
No 43
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=33.73 E-value=10 Score=23.79 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=13.3
Q ss_pred HHHHHhHhcCCCCCc
Q 013730 272 GNFVDLVQRHFYDGM 286 (437)
Q Consensus 272 ~NFl~Lv~~GfYdG~ 286 (437)
.||-.-.++|||||-
T Consensus 4 knfwsslrkgfydge 18 (26)
T 2khf_A 4 KNFWSSLRKGFYDGE 18 (26)
T ss_dssp HHHHHHHHHHHTTTH
T ss_pred HHHHHHHHhhcccch
Confidence 589999999999984
No 44
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=30.08 E-value=2e+02 Score=23.31 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=12.4
Q ss_pred ccHHHHHHHHHHHHHhHHHHHHHHH
Q 013730 168 SKKEHGMELLQKLEAGMDELQQIVE 192 (437)
Q Consensus 168 ~~~~~~~~~~~~l~~~l~~l~~~~~ 192 (437)
..+..-+..+.+|++.|.+|.++|.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~ 60 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSII 60 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555443
No 45
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=28.10 E-value=1e+02 Score=31.61 Aligned_cols=96 Identities=13% Similarity=0.185 Sum_probs=54.2
Q ss_pred HHHHHhhcCCCCChhHHHHhhhhhhhhhh--------------hccccCCCChHHHHhHHHHHHHHhcCccchhcccccc
Q 013730 103 PGALLRYALPIDNKAVREVQKPLEDITDS--------------LKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAES 168 (437)
Q Consensus 103 ~~a~LR~alP~~n~~~r~iq~~lE~~~~~--------------lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~ 168 (437)
...||++--++ .++|.+++..|++|+.. ++..|.-.=..+..-.+++.+.| +
T Consensus 26 ~d~L~kye~~V-~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml-------------~ 91 (411)
T 3ghg_C 26 ADFLSTYQTKV-DKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKML-------------E 91 (411)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHH-------------H
T ss_pred HHHHHHhccch-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHH-------------H
Confidence 35688888777 56899999999888732 12111111111222222222233 2
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHhcCccchhHHHHHHHHHhccccccc
Q 013730 169 KKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNYVGGVEEDM 217 (437)
Q Consensus 169 ~~~~~~~~~~~l~~~l~~l~~~~~~~d~~~~~~~~~~~L~~v~~le~~~ 217 (437)
++..-+.+|....+.|..|+.++...+. +.+++...|..|+...
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~-----~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSNNQ-----KIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 2334577777778888888888766532 3355555556555543
No 46
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=27.06 E-value=2.7e+02 Score=23.10 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=50.9
Q ss_pred hHHHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccc------------cHHHHHHHHHHHHHhH
Q 013730 117 AVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAES------------KKEHGMELLQKLEAGM 184 (437)
Q Consensus 117 ~~r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~------------~~~~~~~~~~~l~~~l 184 (437)
-++.+-..++.+..-++.. ++|+.- .|..+...|......+...+|++ +.+.=.++...+....
T Consensus 15 ~m~~m~~~~~~l~~m~kg~--~~~d~~--~~~~~A~~l~~~a~~~~~~F~~gs~~~~A~p~IW~~~~~F~~~~~~~~~aa 90 (127)
T 2ykz_A 15 ALTLMASHFGRMTPVVKGQ--APYDAV--QIKANVEVLKTLSALPWAAFGPGTEGGDARPEIWSDAASFKQKQQAFQDNI 90 (127)
T ss_dssp HHHHHHHHHHTTHHHHTTS--SCCCHH--HHHHHHHHHHHHHTSSGGGSCTTCCCTTBCTHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--CCCCHH--HHHHHHHHHHHHhhhhHhhCCCCCCCcccCHHHHhCHHHHHHHHHHHHHHH
Confidence 4556666667777777653 556541 23333334433334555555542 4566778888899999
Q ss_pred HHHHHHHHhcCccchhHH
Q 013730 185 DELQQIVEDRDRDAVAPK 202 (437)
Q Consensus 185 ~~l~~~~~~~d~~~~~~~ 202 (437)
..|..+++..|.+.+...
T Consensus 91 ~~l~~aA~~gD~~~~~~a 108 (127)
T 2ykz_A 91 VKLSAAADAGDLDKLRAA 108 (127)
T ss_dssp HHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHH
Confidence 999999888877665443
No 47
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=24.74 E-value=3e+02 Score=22.86 Aligned_cols=83 Identities=10% Similarity=0.063 Sum_probs=50.4
Q ss_pred hhHHHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccc---------------cHHHHHHHHHHH
Q 013730 116 KAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAES---------------KKEHGMELLQKL 180 (437)
Q Consensus 116 ~~~r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~---------------~~~~~~~~~~~l 180 (437)
.-++.+-..++.+..-++.. ++|+.- .|..+...|......+...+|++ +.+.=.++...+
T Consensus 14 ~~m~~m~~~~~~l~~m~kg~--~~~d~~--~~~~~A~~l~~~a~~~~~~F~~gs~~g~s~~A~p~IW~~~~~F~~~~~~~ 89 (129)
T 2j8w_A 14 SAFTLIANHFGRVAAMAQGK--APFDAK--VAAENIALVSTLSKLPLTAFGPGTDKGHGTEAKPAVWSDAAGFKAAADKF 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--SCCCHH--HHHHHHHHHHHHHTSGGGSCCTTCCSSTTCCBCTHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC--CCCCHH--HHHHHHHHHHHHHhhhHHhCCCCCCCCCccccCHHHHhCHHHHHHHHHHH
Confidence 34566666777777777653 566632 22333334433334444455443 335566778888
Q ss_pred HHhHHHHHHHHHhcCccchhHH
Q 013730 181 EAGMDELQQIVEDRDRDAVAPK 202 (437)
Q Consensus 181 ~~~l~~l~~~~~~~d~~~~~~~ 202 (437)
......|..+++..|.+.+...
T Consensus 90 ~~aa~~L~~aA~~~D~~~~~~a 111 (129)
T 2j8w_A 90 AAAVDKLDAAGKTGDFAQIKAA 111 (129)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999888877665443
No 48
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=23.59 E-value=1.5e+02 Score=26.63 Aligned_cols=61 Identities=25% Similarity=0.383 Sum_probs=39.1
Q ss_pred HHHhhhhhhhh-hhhccccCC-CChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHH
Q 013730 119 REVQKPLEDIT-DSLKIAGVK-ALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVE 192 (437)
Q Consensus 119 r~iq~~lE~~~-~~lr~~~~k-~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~ 192 (437)
.++.+.|+++. .-+-.+... .+..+.+.++.--+++ ++.++|+++++.+++.++++++.+.
T Consensus 72 ~~~~~~L~~~gipvv~~~~~~~~~~~~~~~i~~lg~~~-------------g~~~~A~~~~~~~~~~~~~~~~~~~ 134 (256)
T 2r7a_A 72 QIVLDQLRAQKVNVVTLPRVPATLEQMYANIRQLAKTL-------------QVPEQGDALVTQINQRLERVQQNVA 134 (256)
T ss_dssp HHHHHHHHHTTCEEEEECCCSCCHHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHHh-------------CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556677766 223332212 4555666666555555 3467899999999999998887654
No 49
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.74 E-value=79 Score=26.65 Aligned_cols=64 Identities=14% Similarity=0.288 Sum_probs=41.1
Q ss_pred ChhHHHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHH
Q 013730 115 NKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQI 190 (437)
Q Consensus 115 n~~~r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~ 190 (437)
-.+|++||+.|-.+.-+|-+. ...++.|.+....+.|.+=.+.=..++.. ++.|++.|.+|+..
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iA--------rQKLkdAe~~~E~DPDevNK~tl~~R~~~----Vsalq~KiaeLKrq 97 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTA--------RQKLKDAEKAVEVDPDDVNKSTLQNRRAA----VSTLETKLGELKRQ 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhcCCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 378999999999888888664 34467788888888777655443333333 33444444444443
No 50
>3lhs_A Ferrichrome ABC transporter lipoprotein; siderophore, iron, receptor, binding protein, T protein; HET: SF8; 1.30A {Staphylococcus aureus subsp} PDB: 3eiw_A 3eix_A* 3li2_A*
Probab=21.59 E-value=92 Score=28.78 Aligned_cols=57 Identities=14% Similarity=0.258 Sum_probs=37.6
Q ss_pred hhhhhhhhhhhcccc-CCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHH
Q 013730 122 QKPLEDITDSLKIAG-VKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIV 191 (437)
Q Consensus 122 q~~lE~~~~~lr~~~-~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~ 191 (437)
.+.|+++.--+-.+. ...|..+.++++.--+++. +.++|+++++.+++.++++++.+
T Consensus 100 ~~~L~~~~p~v~~~~~~~~~~~~~~~i~~lg~~~g-------------~~~~A~~~~~~~~~~~~~~~~~~ 157 (296)
T 3lhs_A 100 NKELNKIAPTLSLKSFDGDYKQNINSFKTIAKALN-------------KEKEGEKRLAEHDKLINKYKDEI 157 (296)
T ss_dssp HHHHHHHSCEEEECSTTCCHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhCCEEEecCCCCCHHHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666653333322 1467777777666666663 45789999999999988887753
No 51
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.25 E-value=1.6e+02 Score=25.22 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=43.9
Q ss_pred hhHHHHhhhhhhhhhhhccccCCCChHHHHhHHHHHHHHhcCccchhcccccccHHHHHHHHHHHHHhHHHHHHHHHh--
Q 013730 116 KAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVED-- 193 (437)
Q Consensus 116 ~~~r~iq~~lE~~~~~lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~~~~~l~~~l~~l~~~~~~-- 193 (437)
..-.+||++|..+...++. |..+.++...+. ..-+. ..+.+-+..|.+|+..|++|.+.|..
T Consensus 31 ~Vk~EVq~sl~~l~~l~~~-----w~~l~~~~~~~s-------~~E~~----~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 31 VVRGEVQKAVNTARGLYQR-----WCELLQESAAVG-------REELD----WTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHC----------------CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHhhccCCCcc-------hHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888877764 765554432211 00000 23445667788888888888887773
Q ss_pred cCccch------hHHHHHHHHHh
Q 013730 194 RDRDAV------APKQKELLNYV 210 (437)
Q Consensus 194 ~d~~~~------~~~~~~~L~~v 210 (437)
+|+.+| ...|++++..+
T Consensus 95 ~np~kF~l~~~Ei~~Rr~fV~~~ 117 (130)
T 4dnd_A 95 ANPGKFKLPAGDLQERKVFVERM 117 (130)
T ss_dssp HCHHHHCCCHHHHHHHHHHHHHH
T ss_pred hCHHhcCCCHHHHHHHHHHHHHH
Confidence 666444 34455554433
Done!