Query 013731
Match_columns 437
No_of_seqs 312 out of 1144
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:49:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0825 PHD Zn-finger protein 99.6 3.1E-16 6.6E-21 169.4 2.9 109 146-256 120-266 (1134)
2 KOG1244 Predicted transcriptio 99.5 4.9E-15 1.1E-19 145.3 2.9 60 195-256 272-331 (336)
3 KOG0383 Predicted helicase [Ge 99.4 3.4E-14 7.3E-19 154.9 3.7 172 205-389 46-241 (696)
4 KOG1512 PHD Zn-finger protein 99.2 3.3E-12 7.2E-17 126.4 2.2 92 147-256 256-363 (381)
5 KOG4443 Putative transcription 98.9 6.4E-10 1.4E-14 119.8 2.8 111 121-258 6-120 (694)
6 PF00628 PHD: PHD-finger; Int 98.9 4E-10 8.6E-15 83.9 0.3 48 208-255 1-50 (51)
7 KOG4299 PHD Zn-finger protein 98.6 7.6E-09 1.7E-13 111.2 1.5 52 206-257 253-306 (613)
8 smart00249 PHD PHD zinc finger 98.6 3.1E-08 6.6E-13 70.4 3.4 46 208-253 1-47 (47)
9 cd04718 BAH_plant_2 BAH, or Br 98.4 1.6E-07 3.4E-12 86.1 3.7 30 230-259 1-30 (148)
10 PF07496 zf-CW: CW-type Zinc F 98.3 1E-07 2.2E-12 72.2 -0.0 44 354-414 2-50 (50)
11 KOG0957 PHD finger protein [Ge 98.0 2.8E-06 6.1E-11 90.0 3.4 50 205-254 543-596 (707)
12 KOG0955 PHD finger protein BR1 98.0 3.6E-06 7.9E-11 96.2 3.6 71 204-276 217-296 (1051)
13 KOG1245 Chromatin remodeling c 98.0 1.2E-06 2.6E-11 102.9 -1.1 53 206-258 1108-1160(1404)
14 KOG1973 Chromatin remodeling p 97.9 2.6E-06 5.7E-11 84.7 1.2 38 218-257 229-269 (274)
15 COG5141 PHD zinc finger-contai 97.6 3.4E-05 7.4E-10 81.9 2.2 70 206-277 193-271 (669)
16 KOG4323 Polycomb-like PHD Zn-f 97.3 8.7E-05 1.9E-09 78.7 2.0 68 193-260 155-228 (464)
17 COG5034 TNG2 Chromatin remodel 97.3 9.5E-05 2.1E-09 73.1 1.8 41 212-255 226-269 (271)
18 KOG0954 PHD finger protein [Ge 96.8 0.00045 9.7E-09 76.4 1.0 50 205-256 270-321 (893)
19 KOG0956 PHD finger protein AF1 96.6 0.00091 2E-08 73.7 1.5 70 208-279 7-88 (900)
20 PF13831 PHD_2: PHD-finger; PD 96.5 0.00033 7.2E-09 50.0 -1.5 34 219-254 2-36 (36)
21 PHA02929 N1R/p28-like protein; 94.4 0.026 5.7E-07 55.7 2.6 48 145-194 170-227 (238)
22 KOG1246 DNA-binding protein ju 93.9 0.045 9.7E-07 62.8 3.6 51 205-256 154-204 (904)
23 KOG1473 Nucleosome remodeling 93.6 0.045 9.7E-07 63.6 2.8 49 206-257 344-392 (1414)
24 PHA02926 zinc finger-like prot 93.0 0.071 1.5E-06 52.5 2.7 48 146-193 167-229 (242)
25 PF13639 zf-RING_2: Ring finge 87.0 0.17 3.7E-06 36.5 -0.2 38 150-189 1-43 (44)
26 PF12861 zf-Apc11: Anaphase-pr 85.0 0.35 7.7E-06 41.0 0.7 47 208-256 34-80 (85)
27 PF15446 zf-PHD-like: PHD/FYVE 85.0 0.42 9.1E-06 45.3 1.2 49 208-256 1-60 (175)
28 PF01448 ELM2: ELM2 domain; I 82.9 0.58 1.3E-05 35.6 1.0 21 300-320 1-21 (55)
29 KOG0320 Predicted E3 ubiquitin 79.6 2 4.3E-05 41.2 3.5 39 150-190 132-174 (187)
30 KOG4299 PHD Zn-finger protein 79.5 1.5 3.2E-05 48.8 2.9 48 206-256 47-95 (613)
31 KOG0957 PHD finger protein [Ge 79.1 1.4 3E-05 48.0 2.6 68 208-275 121-204 (707)
32 PF14446 Prok-RING_1: Prokaryo 77.9 1.2 2.7E-05 34.8 1.3 32 207-238 6-38 (54)
33 KOG4443 Putative transcription 77.3 0.68 1.5E-05 51.6 -0.3 54 207-260 19-75 (694)
34 PLN03208 E3 ubiquitin-protein 77.2 2.4 5.3E-05 40.9 3.4 33 146-178 15-49 (193)
35 KOG1039 Predicted E3 ubiquitin 72.5 2.3 5E-05 44.4 2.1 46 147-192 159-219 (344)
36 PF07649 C1_3: C1-like domain; 71.4 1.5 3.3E-05 29.6 0.3 28 208-235 2-29 (30)
37 KOG0804 Cytoplasmic Zn-finger 69.2 3.2 6.9E-05 44.8 2.3 67 148-227 174-246 (493)
38 PF13901 DUF4206: Domain of un 64.7 5.3 0.00011 38.4 2.7 41 207-256 153-198 (202)
39 KOG0317 Predicted E3 ubiquitin 62.9 8.2 0.00018 39.5 3.7 43 147-191 237-281 (293)
40 PF15446 zf-PHD-like: PHD/FYVE 61.6 6.4 0.00014 37.5 2.5 22 219-240 121-143 (175)
41 KOG1512 PHD Zn-finger protein 61.3 3 6.6E-05 42.8 0.4 51 207-257 259-318 (381)
42 KOG0383 Predicted helicase [Ge 60.7 1.5 3.2E-05 49.6 -2.2 59 198-259 498-557 (696)
43 PF12678 zf-rbx1: RING-H2 zinc 60.5 4.8 0.0001 32.6 1.3 38 151-190 21-73 (73)
44 PF13832 zf-HC5HC2H_2: PHD-zin 59.0 5.3 0.00012 34.0 1.4 30 206-237 55-86 (110)
45 PF11793 FANCL_C: FANCL C-term 56.7 5.3 0.00011 32.2 1.0 49 207-255 3-63 (70)
46 TIGR00599 rad18 DNA repair pro 55.9 9.2 0.0002 40.8 2.8 48 144-193 21-70 (397)
47 PF15227 zf-C3HC4_4: zinc fing 55.2 4.9 0.00011 29.3 0.5 26 152-177 1-28 (42)
48 PF12861 zf-Apc11: Anaphase-pr 55.0 11 0.00023 32.2 2.5 48 145-192 17-80 (85)
49 KOG1632 Uncharacterized PHD Zn 54.8 8.1 0.00018 40.3 2.2 51 211-261 64-118 (345)
50 COG5574 PEX10 RING-finger-cont 53.1 7.4 0.00016 39.4 1.5 28 149-176 215-244 (271)
51 KOG0823 Predicted E3 ubiquitin 52.4 8.2 0.00018 38.3 1.7 35 147-181 45-81 (230)
52 PF14634 zf-RING_5: zinc-RING 49.4 20 0.00043 26.0 2.9 28 151-178 1-33 (44)
53 PF00097 zf-C3HC4: Zinc finger 49.4 5.8 0.00012 27.8 0.1 27 152-178 1-30 (41)
54 PF13771 zf-HC5HC2H: PHD-like 46.7 10 0.00023 30.9 1.2 29 207-238 37-68 (90)
55 PF13923 zf-C3HC4_2: Zinc fing 45.3 8.4 0.00018 27.1 0.4 35 152-188 1-38 (39)
56 KOG2164 Predicted E3 ubiquitin 45.2 12 0.00025 41.1 1.6 28 149-176 186-215 (513)
57 PF13920 zf-C3HC4_3: Zinc fing 44.8 8 0.00017 28.6 0.2 42 149-192 2-46 (50)
58 KOG1473 Nucleosome remodeling 44.3 3.6 7.9E-05 48.7 -2.4 48 207-257 429-480 (1414)
59 smart00184 RING Ring finger. E 44.2 15 0.00033 23.8 1.6 27 152-178 1-29 (39)
60 KOG1493 Anaphase-promoting com 43.7 15 0.00032 31.1 1.6 44 150-193 21-80 (84)
61 TIGR00570 cdk7 CDK-activating 43.3 22 0.00047 36.9 3.1 28 149-176 3-37 (309)
62 cd00162 RING RING-finger (Real 43.0 7.1 0.00015 26.5 -0.3 42 209-255 2-43 (45)
63 PF00385 Chromo: Chromo (CHRro 40.9 6.7 0.00015 29.2 -0.7 29 357-386 2-32 (55)
64 PF08112 ATP-synt_E_2: ATP syn 40.0 13 0.00027 29.3 0.7 15 422-436 10-24 (56)
65 KOG2177 Predicted E3 ubiquitin 38.5 32 0.0007 31.7 3.3 44 145-190 9-54 (386)
66 KOG0802 E3 ubiquitin ligase [P 35.4 16 0.00035 39.9 0.9 43 148-192 290-339 (543)
67 PF10367 Vps39_2: Vacuolar sor 35.1 25 0.00054 29.0 1.8 31 206-237 78-108 (109)
68 PF00130 C1_1: Phorbol esters/ 34.1 25 0.00055 25.9 1.5 31 207-237 12-44 (53)
69 COG5540 RING-finger-containing 33.2 16 0.00035 38.0 0.4 49 141-191 315-369 (374)
70 KOG0978 E3 ubiquitin ligase in 33.1 24 0.00051 40.3 1.7 44 148-194 642-689 (698)
71 KOG0384 Chromodomain-helicase 30.2 27 0.00059 42.2 1.6 34 351-387 281-314 (1373)
72 PF03107 C1_2: C1 domain; Int 30.0 43 0.00093 22.7 1.9 28 208-235 2-29 (30)
73 smart00504 Ubox Modified RING 29.2 40 0.00087 25.3 1.9 39 151-191 3-43 (63)
74 KOG3612 PHD Zn-finger protein 27.6 52 0.0011 36.7 3.0 49 205-257 59-109 (588)
75 COG5194 APC11 Component of SCF 27.4 57 0.0012 27.9 2.6 28 164-193 53-80 (88)
76 KOG1785 Tyrosine kinase negati 26.6 33 0.00071 37.0 1.3 41 151-191 371-413 (563)
77 cd04709 BAH_MTA BAH, or Bromo 26.1 35 0.00076 32.1 1.3 21 298-318 141-161 (164)
78 COG5219 Uncharacterized conser 25.2 26 0.00057 41.5 0.3 48 145-192 1465-1521(1525)
79 KOG4628 Predicted E3 ubiquitin 24.9 50 0.0011 34.8 2.2 27 151-177 231-262 (348)
80 PF10497 zf-4CXXC_R1: Zinc-fin 24.7 26 0.00056 30.6 0.1 48 207-255 8-69 (105)
81 PF07227 DUF1423: Protein of u 24.6 41 0.00089 36.5 1.6 54 204-257 126-193 (446)
82 PRK14559 putative protein seri 23.4 87 0.0019 35.6 3.9 51 208-260 3-54 (645)
83 smart00298 CHROMO Chromatin or 22.9 53 0.0012 23.7 1.5 28 358-386 4-31 (55)
84 KOG0311 Predicted E3 ubiquitin 22.8 17 0.00036 38.5 -1.6 42 149-191 43-87 (381)
85 PF02318 FYVE_2: FYVE-type zin 22.7 27 0.00059 30.6 -0.1 18 198-215 71-88 (118)
86 cd00350 rubredoxin_like Rubred 22.1 56 0.0012 22.6 1.4 13 246-258 16-28 (33)
87 cd00029 C1 Protein kinase C co 22.0 48 0.001 23.7 1.1 31 207-237 12-44 (50)
88 KOG1244 Predicted transcriptio 21.7 28 0.00061 35.7 -0.2 44 214-257 239-285 (336)
89 cd00730 rubredoxin Rubredoxin; 21.4 45 0.00099 25.6 0.9 16 243-259 31-46 (50)
90 PF14835 zf-RING_6: zf-RING of 21.3 60 0.0013 26.5 1.6 39 149-191 7-48 (65)
91 KOG1829 Uncharacterized conser 20.9 24 0.00052 39.4 -1.0 51 200-257 503-560 (580)
92 KOG1081 Transcription factor N 20.5 80 0.0017 34.3 2.9 46 206-257 89-134 (463)
No 1
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.59 E-value=3.1e-16 Score=169.41 Aligned_cols=109 Identities=26% Similarity=0.477 Sum_probs=89.3
Q ss_pred CCCCCCCCCcccCCCC-----CCCcchhhhHHHhhhccccccccccccccccccccCC--------C-------------
Q 013731 146 GSDISNSDISRLEVLD-----EDPSAREFCVSVLRSNGLLGAVGECSVRSVASGEVSG--------T------------- 199 (437)
Q Consensus 146 ~dd~eeC~ic~~~~~~-----ed~s~h~fCis~L~s~g~l~~v~~Cp~~~~t~~~~~~--------w------------- 199 (437)
-.+.+.|++|+..++. +..|+|.||-+||.+|..+. .+||+++..|.++.. |
T Consensus 120 ~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a--qTCPiDR~EF~~v~V~eS~~~~~~vR~lP~EEs~~~~ 197 (1134)
T KOG0825|consen 120 THVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA--QTCPVDRGEFGEVKVLESTGIEANVRCLPSEESENIL 197 (1134)
T ss_pred hhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc--ccCchhhhhhheeeeeccccccceeEecchhhhhhhh
Confidence 5667899999999743 45799999999999999555 999999987754321 1
Q ss_pred -----------cccccccccccccccCCCCCCeEEeccCCCC-CCCcccCCCCCCCCCCCCcCccCcCC
Q 013731 200 -----------GHEISVIQSCKLCGKADNTSTMLLCDYCDEA-FHPSCCNPRIKILPTDNWLCQCCSNL 256 (437)
Q Consensus 200 -----------~c~~c~~~~C~vCg~~~~~~~LLlCD~Cd~a-yH~~CL~PPL~~iP~g~W~Cp~C~~~ 256 (437)
.-..-....|.+|+..+.++.||+||.|+.+ ||+|||+|+|.++|.+.|||++|...
T Consensus 198 e~~~d~~~d~~~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 198 EKGGDEKQDQISGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred hhccccccccccCcccccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 0011124579999999999999999999999 99999999999999999999999754
No 2
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.51 E-value=4.9e-15 Score=145.29 Aligned_cols=60 Identities=27% Similarity=0.702 Sum_probs=57.1
Q ss_pred ccCCCcccccccccccccccCCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcCC
Q 013731 195 EVSGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (437)
Q Consensus 195 ~~~~w~c~~c~~~~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~ 256 (437)
.++.|||.+| +.|.+||.++++++|||||.||+|||||||.|||.+.|+|.|.|.-|...
T Consensus 272 k~yrwqciec--k~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 272 KTYRWQCIEC--KYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred Hhheeeeeec--ceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 4689999999 99999999999999999999999999999999999999999999999753
No 3
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=99.45 E-value=3.4e-14 Score=154.87 Aligned_cols=172 Identities=16% Similarity=0.315 Sum_probs=126.3
Q ss_pred ccccccccccCCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcCCCCcccccccccCCCCCccCCCCCCCCcc
Q 013731 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNVSQENSFLKSPNNSWMYGKPRSEMG 284 (437)
Q Consensus 205 ~~~~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~~~~v~~~~~~~k~~~i~W~~grpr~~~g 284 (437)
....|.+|+.++ .+|+||.|..+||++|++||+..+|.++|.|+.|....+... + ..++.|.|..+...
T Consensus 46 ~~e~c~ic~~~g---~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~~~k----~--~~il~~~~~~~~~~-- 114 (696)
T KOG0383|consen 46 EQEACRICADGG---ELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKNAGK----I--EKILGWRWKPTPKP-- 114 (696)
T ss_pred hhhhhhhhcCCC---cEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCCccc----c--cccceeEecCCCCc--
Confidence 348899999888 899999999999999999999999999999999955443211 1 13566766543211
Q ss_pred cccccccCCCCCCCceecCCCceeecC---CCCcccccccc----------------cCCCCCCCChhhh---cccccc-
Q 013731 285 RIALMLKYPEPYTSRVRIGESYQAEVP---DWSDQISSNLD----------------SFSEPLEMDPAET---VGLNVQ- 341 (437)
Q Consensus 285 pi~~m~~dt~pyts~vRiGr~fqa~Vp---~W~~~~~s~~~----------------~~~EP~~~D~~~~---~~l~~~- 341 (437)
....-.-.+++.+.++..++|++++. +|++.|..++. .+.+|.+.+..-+ .++.-.
T Consensus 115 -~~~~~~~~~~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a 193 (696)
T KOG0383|consen 115 -REGNQGVISPRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLPVELQRKHDTDQKPEAEIGVTRDKGKLVPYA 193 (696)
T ss_pred -cccCcCccCCcccccchhhhcccccccCCccchhHHHHHHhhhhcccchHhhhhhhhcccCccccccccccCccccccc
Confidence 01111235567888899999999976 99999998754 4555555554300 111111
Q ss_pred -ccCCccCCCCcccchhhhhhcccCCCCcccCceeeecccccccccccC
Q 013731 342 -FSNQFSKPDSISNWLQCQEVLTNNDTNVCVEGTKCGKWRRAPFSEVQT 389 (437)
Q Consensus 342 -~~~~~~~~~~~~nWlqc~evl~~~~~~~~~~~~icgKWRraP~~~vq~ 389 (437)
...+++.++++++|+++++||++ ....+++++|.+|||.++|++--.
T Consensus 194 ~~~~r~~~~~iKpe~~~i~rii~~-~~s~~~~~~~~Vk~k~l~~d~~~~ 241 (696)
T KOG0383|consen 194 DLEERFLLYGIKPEWMPIARIINR-RSSQKGATDYLVKWKELSYDEQEW 241 (696)
T ss_pred cchhhhhheeccccccccchhhhh-hcccccceeeEeeeccCCccccCC
Confidence 13489999999999999999998 556789999999999999997543
No 4
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.22 E-value=3.3e-12 Score=126.38 Aligned_cols=92 Identities=20% Similarity=0.398 Sum_probs=76.7
Q ss_pred CCCCCCCCcccCC--------------CCCCCcchhhhHHHhhhc-cccccccccccccccccccCCCcccccccccccc
Q 013731 147 SDISNSDISRLEV--------------LDEDPSAREFCVSVLRSN-GLLGAVGECSVRSVASGEVSGTGHEISVIQSCKL 211 (437)
Q Consensus 147 dd~eeC~ic~~~~--------------~~ed~s~h~fCis~L~s~-g~l~~v~~Cp~~~~t~~~~~~w~c~~c~~~~C~v 211 (437)
-...+|.+|...- .+..++.|..|+.++.+- |+++ .+.|+|.+| +.|.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~K--------------TY~W~C~~C--~lC~I 319 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYK--------------TYFWKCSSC--ELCRI 319 (381)
T ss_pred cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHh--------------hcchhhccc--Hhhhc
Confidence 4456799998763 345678899999988654 3333 689999999 99999
Q ss_pred cccCCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCCcCc-cCcCC
Q 013731 212 CGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQ-CCSNL 256 (437)
Q Consensus 212 Cg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp-~C~~~ 256 (437)
|+++..++.++|||.||+|||++|++ |..+|.|.|.|. .|...
T Consensus 320 C~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 320 CLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREA 363 (381)
T ss_pred cCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHh
Confidence 99999999999999999999999999 999999999998 35443
No 5
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.89 E-value=6.4e-10 Score=119.79 Aligned_cols=111 Identities=23% Similarity=0.509 Sum_probs=86.4
Q ss_pred cccccccccccCCCCCccccccccCCCCCCC----CCCcccCCCCCCCcchhhhHHHhhhcccccccccccccccccccc
Q 013731 121 KELRSKNIRSSKSKMGVGCCNRNTEGSDISN----SDISRLEVLDEDPSAREFCVSVLRSNGLLGAVGECSVRSVASGEV 196 (437)
Q Consensus 121 ~~~~s~nd~ss~snm~~~s~s~~~~~dd~ee----C~ic~~~~~~ed~s~h~fCis~L~s~g~l~~v~~Cp~~~~t~~~~ 196 (437)
.++.+.|+.+++--|++.+.++ +...+. |..|. ..+|..|.....++..+.
T Consensus 6 ~~~s~~~~~~~~~~mc~l~~s~---G~~~ag~m~ac~~c~-------~~yH~~cvt~~~~~~~l~--------------- 60 (694)
T KOG4443|consen 6 AEVSSSDKAIIVCLMCPLCGSS---GKGRAGRLLACSDCG-------QKYHPYCVTSWAQHAVLS--------------- 60 (694)
T ss_pred eeEeccchhhhhhhhhhhhccc---cccccCcchhhhhhc-------ccCCcchhhHHHhHHHhc---------------
Confidence 4555666688888888876665 222222 43333 467888887765554333
Q ss_pred CCCcccccccccccccccCCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcCCCC
Q 013731 197 SGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNS 258 (437)
Q Consensus 197 ~~w~c~~c~~~~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~~~ 258 (437)
.+|+|..| .+|+.|+..+++.++++|+.||.+||.||..|+++.||.|.|+|+.|..+..
T Consensus 61 ~gWrC~~c--rvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~q 120 (694)
T KOG4443|consen 61 GGWRCPSC--RVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQ 120 (694)
T ss_pred CCcccCCc--eeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhh
Confidence 27999999 9999999999999999999999999999999999999999999999876543
No 6
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.87 E-value=4e-10 Score=83.90 Aligned_cols=48 Identities=33% Similarity=1.005 Sum_probs=43.3
Q ss_pred cccccccCCCCCCeEEeccCCCCCCCcccCCCCC--CCCCCCCcCccCcC
Q 013731 208 SCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIK--ILPTDNWLCQCCSN 255 (437)
Q Consensus 208 ~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~--~iP~g~W~Cp~C~~ 255 (437)
+|.+|++.++.+.||.||.|+..||+.|++|++. .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5889999888999999999999999999999988 56667999999964
No 7
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.65 E-value=7.6e-09 Score=111.19 Aligned_cols=52 Identities=25% Similarity=0.759 Sum_probs=47.1
Q ss_pred cccccccccCCCCCCeEEeccCCCCCCCcccCCCC--CCCCCCCCcCccCcCCC
Q 013731 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRI--KILPTDNWLCQCCSNLN 257 (437)
Q Consensus 206 ~~~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL--~~iP~g~W~Cp~C~~~~ 257 (437)
..+|..|++.+.-..+++||+|+++||++||.||| +.+|.|.|||++|....
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 35999999999888889999999999999999995 58999999999997653
No 8
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.43 E-value=1.6e-07 Score=86.06 Aligned_cols=30 Identities=33% Similarity=0.897 Sum_probs=27.3
Q ss_pred CCCCcccCCCCCCCCCCCCcCccCcCCCCc
Q 013731 230 AFHPSCCNPRIKILPTDNWLCQCCSNLNSN 259 (437)
Q Consensus 230 ayH~~CL~PPL~~iP~g~W~Cp~C~~~~~~ 259 (437)
||||+||+|||+.+|+|+|+||.|......
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence 799999999999999999999999876533
No 10
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=98.33 E-value=1e-07 Score=72.23 Aligned_cols=44 Identities=43% Similarity=0.983 Sum_probs=26.9
Q ss_pred cchhhhhhcccCCCCcccCceeeeccccccccccc-----CCCcceeeeeecCCCCCCCCCCcccc
Q 013731 354 NWLQCQEVLTNNDTNVCVEGTKCGKWRRAPFSEVQ-----TDSWDCSCAILWDPLHSDCAVPQELE 414 (437)
Q Consensus 354 nWlqc~evl~~~~~~~~~~~~icgKWRraP~~~vq-----~~~w~c~c~~~wdp~h~dca~pqe~~ 414 (437)
+|+||-. |+|||++|..... .|.|.|+=.. ||.++.|.+|||+|
T Consensus 2 ~WVQCd~---------------C~KWR~lp~~~~~~~~~~~d~W~C~~n~--~~~~~sC~~pee~e 50 (50)
T PF07496_consen 2 YWVQCDS---------------CLKWRRLPEEVDPIREELPDPWYCSMNP--DPPFNSCDAPEEIE 50 (50)
T ss_dssp EEEE-TT---------------T--EEEE-CCHHCTSCCSSTT--GGGSS---CCC-STTS--SS-
T ss_pred eEEECCC---------------CCceeeCChhhCcccccCCCeEEcCCCC--CCCCCCCCCcccCC
Confidence 6999973 9999999976543 5799988766 99999999999986
No 11
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=98.03 E-value=2.8e-06 Score=90.00 Aligned_cols=50 Identities=30% Similarity=0.824 Sum_probs=46.1
Q ss_pred ccccccccccCCCCCCeEEeccCCCCCCCcccCCCCCCCCCC----CCcCccCc
Q 013731 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTD----NWLCQCCS 254 (437)
Q Consensus 205 ~~~~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g----~W~Cp~C~ 254 (437)
....|-+|++..+...++.||.|...||+.||+|||+.+|.- .|.|.+|-
T Consensus 543 ~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 543 MNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred cceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 346799999999999999999999999999999999999985 59999993
No 12
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.00 E-value=3.6e-06 Score=96.19 Aligned_cols=71 Identities=24% Similarity=0.656 Sum_probs=59.3
Q ss_pred cccccccccccCCCC--CCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcCCCCcc-------cccccccCCCCCcc
Q 013731 204 SVIQSCKLCGKADNT--STMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNV-------SQENSFLKSPNNSW 274 (437)
Q Consensus 204 c~~~~C~vCg~~~~~--~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~~~~v-------~~~~~~~k~~~i~W 274 (437)
..+..|.+|.+++-. +.+|+||+|+.++|++|.+ ..-+|+|.|+|..|....... .+.++|+++..-+|
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw 294 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRW 294 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCce
Confidence 356899999998866 7999999999999999999 778999999999998766444 45677887777777
Q ss_pred CC
Q 013731 275 MY 276 (437)
Q Consensus 275 ~~ 276 (437)
..
T Consensus 295 ~H 296 (1051)
T KOG0955|consen 295 AH 296 (1051)
T ss_pred ee
Confidence 64
No 13
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.96 E-value=1.2e-06 Score=102.90 Aligned_cols=53 Identities=32% Similarity=0.858 Sum_probs=50.0
Q ss_pred cccccccccCCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcCCCC
Q 013731 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNS 258 (437)
Q Consensus 206 ~~~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~~~ 258 (437)
...|++|.+......|++||.|+.+||++|+.|.+..+|.|+|+||.|.....
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 47899999999999999999999999999999999999999999999988764
No 14
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.95 E-value=2.6e-06 Score=84.67 Aligned_cols=38 Identities=37% Similarity=0.851 Sum_probs=34.8
Q ss_pred CCCeEEecc--CC-CCCCCcccCCCCCCCCCCCCcCccCcCCC
Q 013731 218 TSTMLLCDY--CD-EAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (437)
Q Consensus 218 ~~~LLlCD~--Cd-~ayH~~CL~PPL~~iP~g~W~Cp~C~~~~ 257 (437)
.+.|+-||+ |+ .+||+.|++ |+..|.|.|||+.|....
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred cccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence 459999998 99 999999999 999999999999998654
No 15
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.56 E-value=3.4e-05 Score=81.87 Aligned_cols=70 Identities=27% Similarity=0.686 Sum_probs=58.5
Q ss_pred cccccccccCCCC--CCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcCCCCcc-------cccccccCCCCCccCC
Q 013731 206 IQSCKLCGKADNT--STMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNV-------SQENSFLKSPNNSWMY 276 (437)
Q Consensus 206 ~~~C~vCg~~~~~--~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~~~~v-------~~~~~~~k~~~i~W~~ 276 (437)
+..|.+|..++++ +.+++||+|+.+-|..|.+ +..+|+|.|+|..|.-....+ .++++|+.+..-+|.+
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~H 270 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWGH 270 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchHh
Confidence 3788999887754 5899999999999999999 889999999999998776555 4677888887777775
Q ss_pred C
Q 013731 277 G 277 (437)
Q Consensus 277 g 277 (437)
.
T Consensus 271 ~ 271 (669)
T COG5141 271 V 271 (669)
T ss_pred H
Confidence 3
No 16
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.34 E-value=8.7e-05 Score=78.73 Aligned_cols=68 Identities=26% Similarity=0.540 Sum_probs=51.8
Q ss_pred ccccCCCcccccccccccccccC--CCCCCeEEeccCCCCCCCcccCCCCCCC----CCCCCcCccCcCCCCcc
Q 013731 193 SGEVSGTGHEISVIQSCKLCGKA--DNTSTMLLCDYCDEAFHPSCCNPRIKIL----PTDNWLCQCCSNLNSNV 260 (437)
Q Consensus 193 ~~~~~~w~c~~c~~~~C~vCg~~--~~~~~LLlCD~Cd~ayH~~CL~PPL~~i----P~g~W~Cp~C~~~~~~v 260 (437)
+....+|.-.......|.+|+.+ +..++||+|+.|...||..|..|+.+.. |.++|||..|......+
T Consensus 155 ~~~~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 155 PEASLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKV 228 (464)
T ss_pred cccccccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhc
Confidence 34456776555555668787654 4566999999999999999999998743 66789999998876544
No 17
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.31 E-value=9.5e-05 Score=73.08 Aligned_cols=41 Identities=32% Similarity=0.872 Sum_probs=34.3
Q ss_pred cccCCCCCCeEEecc--CCC-CCCCcccCCCCCCCCCCCCcCccCcC
Q 013731 212 CGKADNTSTMLLCDY--CDE-AFHPSCCNPRIKILPTDNWLCQCCSN 255 (437)
Q Consensus 212 Cg~~~~~~~LLlCD~--Cd~-ayH~~CL~PPL~~iP~g~W~Cp~C~~ 255 (437)
|.+. .-+.|+-||+ |.+ +||+.|++ |.+.|+|.|||+.|..
T Consensus 226 Cqqv-SyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 226 CQQV-SYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKK 269 (271)
T ss_pred eccc-ccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHh
Confidence 4444 2458999995 875 89999999 9999999999999975
No 18
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.77 E-value=0.00045 Score=76.42 Aligned_cols=50 Identities=30% Similarity=0.789 Sum_probs=44.0
Q ss_pred ccccccccccCCC--CCCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcCC
Q 013731 205 VIQSCKLCGKADN--TSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (437)
Q Consensus 205 ~~~~C~vCg~~~~--~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~ 256 (437)
.+-.|.+|..++. .+.|+|||.|+...|+-|.+ +.++|+|.|.|..|.-.
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALG 321 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence 4578999998854 45999999999999999999 99999999999999653
No 19
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.56 E-value=0.00091 Score=73.66 Aligned_cols=70 Identities=24% Similarity=0.632 Sum_probs=52.0
Q ss_pred cccccccCC--CCCCeEEecc--CCCCCCCcccCCCCCCCCCCCCcCccCcCCC--------CcccccccccCCCCCccC
Q 013731 208 SCKLCGKAD--NTSTMLLCDY--CDEAFHPSCCNPRIKILPTDNWLCQCCSNLN--------SNVSQENSFLKSPNNSWM 275 (437)
Q Consensus 208 ~C~vCg~~~--~~~~LLlCD~--Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~~--------~~v~~~~~~~k~~~i~W~ 275 (437)
-|.||.+.. -++.|+.||+ |.-+.|.-|++ +..||.|.|||..|.... -.-.++++.++..+--|.
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWA 84 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWA 84 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCce
Confidence 366776543 3568999995 99999999999 999999999999996532 111345666777777777
Q ss_pred CCCC
Q 013731 276 YGKP 279 (437)
Q Consensus 276 ~grp 279 (437)
+...
T Consensus 85 HVVC 88 (900)
T KOG0956|consen 85 HVVC 88 (900)
T ss_pred EEEE
Confidence 6543
No 20
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.52 E-value=0.00033 Score=49.98 Aligned_cols=34 Identities=38% Similarity=1.083 Sum_probs=20.8
Q ss_pred CCeEEeccCCCCCCCcccCCCCCCCCCC-CCcCccCc
Q 013731 219 STMLLCDYCDEAFHPSCCNPRIKILPTD-NWLCQCCS 254 (437)
Q Consensus 219 ~~LLlCD~Cd~ayH~~CL~PPL~~iP~g-~W~Cp~C~ 254 (437)
+.||.|+.|....|..|.+ +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 4799999999999999999 7788887 89998874
No 21
>PHA02929 N1R/p28-like protein; Provisional
Probab=94.44 E-value=0.026 Score=55.75 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=36.7
Q ss_pred CCCCCCCCCCcccCCCCC----------CCcchhhhHHHhhhcccccccccccccccccc
Q 013731 145 EGSDISNSDISRLEVLDE----------DPSAREFCVSVLRSNGLLGAVGECSVRSVASG 194 (437)
Q Consensus 145 ~~dd~eeC~ic~~~~~~e----------d~s~h~fCis~L~s~g~l~~v~~Cp~~~~t~~ 194 (437)
+.++.++|+||+..+... ..|.|.||..||.+|- ....+||++|..+.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl--~~~~tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWK--KEKNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHH--hcCCCCCCCCCEee
Confidence 445678999999986432 2599999999999985 44589999987654
No 22
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=93.93 E-value=0.045 Score=62.82 Aligned_cols=51 Identities=31% Similarity=0.888 Sum_probs=46.0
Q ss_pred ccccccccccCCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcCC
Q 013731 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (437)
Q Consensus 205 ~~~~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~ 256 (437)
....|..|.++..+ .+++|+.|...||.+|+.|+++.+|.|+|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 34679999999888 5559999999999999999999999999999999876
No 23
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=93.59 E-value=0.045 Score=63.56 Aligned_cols=49 Identities=22% Similarity=0.653 Sum_probs=44.6
Q ss_pred cccccccccCCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcCCC
Q 013731 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (437)
Q Consensus 206 ~~~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~~ 257 (437)
...|.+|++.+ .+++|..|++-||+.|..||+.++|...|-|--|...+
T Consensus 344 ddhcrf~~d~~---~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hk 392 (1414)
T KOG1473|consen 344 DDHCRFCHDLG---DLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHK 392 (1414)
T ss_pred cccccccCccc---ceeecccCCceEEeeecCCccccCCCccchhhhhhhhc
Confidence 46799998877 89999999999999999999999999999999998654
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=92.96 E-value=0.071 Score=52.48 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=33.0
Q ss_pred CCCCCCCCCcccCCCC---------C--CCcchhhhHHHhhhcccccc----ccccccccccc
Q 013731 146 GSDISNSDISRLEVLD---------E--DPSAREFCVSVLRSNGLLGA----VGECSVRSVAS 193 (437)
Q Consensus 146 ~dd~eeC~ic~~~~~~---------e--d~s~h~fCis~L~s~g~l~~----v~~Cp~~~~t~ 193 (437)
.....+|+||+..+.. + ..|.|.||+.||+.|..... ...||+.|..+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 3445789999987511 1 36999999999999974321 24477776654
No 25
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=87.02 E-value=0.17 Score=36.51 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=27.2
Q ss_pred CCCCCcccCCCCCC-----CcchhhhHHHhhhccccccccccccc
Q 013731 150 SNSDISRLEVLDED-----PSAREFCVSVLRSNGLLGAVGECSVR 189 (437)
Q Consensus 150 eeC~ic~~~~~~ed-----~s~h~fCis~L~s~g~l~~v~~Cp~~ 189 (437)
++|+||...+..++ .+.|.||.+||.+|-.. .++||+.
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~--~~~CP~C 43 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR--NNSCPVC 43 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH--SSB-TTT
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh--CCcCCcc
Confidence 37999999974322 48999999999988533 3677764
No 26
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=85.03 E-value=0.35 Score=41.01 Aligned_cols=47 Identities=17% Similarity=0.462 Sum_probs=35.5
Q ss_pred cccccccCCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcCC
Q 013731 208 SCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (437)
Q Consensus 208 ~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~ 256 (437)
.|..|..++++-.++++. |...||+.|+.--|.+- ...=.||-|+..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 466788888777777666 99999999998776653 233489999764
No 27
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=85.00 E-value=0.42 Score=45.29 Aligned_cols=49 Identities=27% Similarity=0.825 Sum_probs=35.7
Q ss_pred cccccc---cCCCCCCeEEeccCCCCCCCcccCCCCC------CCCCCC--CcCccCcCC
Q 013731 208 SCKLCG---KADNTSTMLLCDYCDEAFHPSCCNPRIK------ILPTDN--WLCQCCSNL 256 (437)
Q Consensus 208 ~C~vCg---~~~~~~~LLlCD~Cd~ayH~~CL~PPL~------~iP~g~--W~Cp~C~~~ 256 (437)
.|.+|+ ...+-+.|++|-+|-.+||-.||+|... .|-.++ -.|..|+..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 477774 4445669999999999999999998764 344443 567777543
No 28
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=82.86 E-value=0.58 Score=35.65 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=17.8
Q ss_pred eecCCCceeecCCCCcccccc
Q 013731 300 VRIGESYQAEVPDWSDQISSN 320 (437)
Q Consensus 300 vRiGr~fqa~Vp~W~~~~~s~ 320 (437)
+|+|..|||+||++.......
T Consensus 1 IrVG~~yQA~IP~~~~~~~~~ 21 (55)
T PF01448_consen 1 IRVGPEYQAEIPELLPDSERD 21 (55)
T ss_pred CCcCCccCCcCCCCccccccc
Confidence 599999999999998877643
No 29
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.59 E-value=2 Score=41.25 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=29.7
Q ss_pred CCCCCcccCCCCCC----CcchhhhHHHhhhcccccccccccccc
Q 013731 150 SNSDISRLEVLDED----PSAREFCVSVLRSNGLLGAVGECSVRS 190 (437)
Q Consensus 150 eeC~ic~~~~~~ed----~s~h~fCis~L~s~g~l~~v~~Cp~~~ 190 (437)
-+||||+..++... .|.|.||-.||+. .+.+...||+.+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~--alk~~~~CP~C~ 174 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKD--ALKNTNKCPTCR 174 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHH--HHHhCCCCCCcc
Confidence 46999999987665 4899999999975 445556777655
No 30
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.48 E-value=1.5 Score=48.75 Aligned_cols=48 Identities=29% Similarity=0.694 Sum_probs=40.4
Q ss_pred cccccccccCCCCCCeEEeccCCCCCCCcccCCCCC-CCCCCCCcCccCcCC
Q 013731 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIK-ILPTDNWLCQCCSNL 256 (437)
Q Consensus 206 ~~~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~-~iP~g~W~Cp~C~~~ 256 (437)
...|.+|..++ .++.|+.|+.+||..|.++++. ..+.+.|.|..|...
T Consensus 47 ~ts~~~~~~~g---n~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 47 ATSCGICKSGG---NLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred hhhcchhhhcC---CccccccCccccchhccCcccCcccccccccccCCCcc
Confidence 37788998888 7899999999999999999988 334457999999764
No 31
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=79.11 E-value=1.4 Score=48.05 Aligned_cols=68 Identities=22% Similarity=0.529 Sum_probs=46.2
Q ss_pred ccccccc--CCCCCCeEEeccCCCCCCCcccCCC-CCCCCCC-------CCcCccCcCCCCcc------cccccccCCCC
Q 013731 208 SCKLCGK--ADNTSTMLLCDYCDEAFHPSCCNPR-IKILPTD-------NWLCQCCSNLNSNV------SQENSFLKSPN 271 (437)
Q Consensus 208 ~C~vCg~--~~~~~~LLlCD~Cd~ayH~~CL~PP-L~~iP~g-------~W~Cp~C~~~~~~v------~~~~~~~k~~~ 271 (437)
+|-||-. ..+.+.+|.||.|+...|-.|++-- -..||.| .|||-.|+.....- -+.+.|+....
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKetDi 200 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKETDI 200 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcccccch
Confidence 6778843 4466799999999999999999853 1245654 59999997654311 22345555555
Q ss_pred CccC
Q 013731 272 NSWM 275 (437)
Q Consensus 272 i~W~ 275 (437)
.+|.
T Consensus 201 grWv 204 (707)
T KOG0957|consen 201 GRWV 204 (707)
T ss_pred hhHH
Confidence 5665
No 32
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=77.93 E-value=1.2 Score=34.84 Aligned_cols=32 Identities=25% Similarity=0.777 Sum_probs=28.1
Q ss_pred ccccccccCCC-CCCeEEeccCCCCCCCcccCC
Q 013731 207 QSCKLCGKADN-TSTMLLCDYCDEAFHPSCCNP 238 (437)
Q Consensus 207 ~~C~vCg~~~~-~~~LLlCD~Cd~ayH~~CL~P 238 (437)
..|.+|++.-. .+.++.|..|..-||-.|...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 67999998864 779999999999999999864
No 33
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=77.34 E-value=0.68 Score=51.60 Aligned_cols=54 Identities=24% Similarity=0.695 Sum_probs=41.0
Q ss_pred ccccccccCC--CCCCeEEeccCCCCCCCcccCCCCCCC-CCCCCcCccCcCCCCcc
Q 013731 207 QSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCNPRIKIL-PTDNWLCQCCSNLNSNV 260 (437)
Q Consensus 207 ~~C~vCg~~~--~~~~LLlCD~Cd~ayH~~CL~PPL~~i-P~g~W~Cp~C~~~~~~v 260 (437)
..|.+|+..+ .++.|+.|..|..-||.+|++--+... =.+.|.|+.|+.+.+..
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~ 75 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACG 75 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeecc
Confidence 6778887665 456899999999999999999555433 23449999998876443
No 34
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=77.21 E-value=2.4 Score=40.94 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=25.2
Q ss_pred CCCCCCCCCcccCCCCC--CCcchhhhHHHhhhcc
Q 013731 146 GSDISNSDISRLEVLDE--DPSAREFCVSVLRSNG 178 (437)
Q Consensus 146 ~dd~eeC~ic~~~~~~e--d~s~h~fCis~L~s~g 178 (437)
.+..-+|+||...+... -.|.|.||-.||..|-
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl 49 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWT 49 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHH
Confidence 33446799999887444 2599999999999873
No 35
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.47 E-value=2.3 Score=44.36 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=32.3
Q ss_pred CCCCCCCCcccCCCCC----------CCcchhhhHHHhhhcccccc-----cccccccccc
Q 013731 147 SDISNSDISRLEVLDE----------DPSAREFCVSVLRSNGLLGA-----VGECSVRSVA 192 (437)
Q Consensus 147 dd~eeC~ic~~~~~~e----------d~s~h~fCis~L~s~g~l~~-----v~~Cp~~~~t 192 (437)
....+|+||...+... -.|.|.||+.|++.|..... +..||.+|+.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~ 219 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVP 219 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCc
Confidence 4466899999886222 24899999999999985553 3455555543
No 36
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=71.40 E-value=1.5 Score=29.61 Aligned_cols=28 Identities=32% Similarity=0.789 Sum_probs=12.5
Q ss_pred cccccccCCCCCCeEEeccCCCCCCCcc
Q 013731 208 SCKLCGKADNTSTMLLCDYCDEAFHPSC 235 (437)
Q Consensus 208 ~C~vCg~~~~~~~LLlCD~Cd~ayH~~C 235 (437)
.|.+|++.......-.|..|+-..|+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 5889999987777888999999999887
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.19 E-value=3.2 Score=44.77 Aligned_cols=67 Identities=15% Similarity=0.267 Sum_probs=44.0
Q ss_pred CCCCCCCcccCC---CCC---CCcchhhhHHHhhhccccccccccccccccccccCCCcccccccccccccccCCCCCCe
Q 013731 148 DISNSDISRLEV---LDE---DPSAREFCVSVLRSNGLLGAVGECSVRSVASGEVSGTGHEISVIQSCKLCGKADNTSTM 221 (437)
Q Consensus 148 d~eeC~ic~~~~---~~e---d~s~h~fCis~L~s~g~l~~v~~Cp~~~~t~~~~~~w~c~~c~~~~C~vCg~~~~~~~L 221 (437)
+.-.|+.|+... +++ -.|.|.|--+||..|+ . .+||+.|.......+ ....|.+|+... .+
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~--~scpvcR~~q~p~~v------e~~~c~~c~~~~---~L 240 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--D--SSCPVCRYCQSPSVV------ESSLCLACGCTE---DL 240 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcc--c--CcChhhhhhcCcchh------hhhhhhhhcccc---cE
Confidence 344699999875 222 3688999889999998 4 679998876442211 135677777665 45
Q ss_pred EEeccC
Q 013731 222 LLCDYC 227 (437)
Q Consensus 222 LlCD~C 227 (437)
.+|=.|
T Consensus 241 wicliC 246 (493)
T KOG0804|consen 241 WICLIC 246 (493)
T ss_pred EEEEEc
Confidence 555444
No 38
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=64.72 E-value=5.3 Score=38.36 Aligned_cols=41 Identities=29% Similarity=0.725 Sum_probs=32.2
Q ss_pred ccccccccCC-----CCCCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcCC
Q 013731 207 QSCKLCGKAD-----NTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (437)
Q Consensus 207 ~~C~vCg~~~-----~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~ 256 (437)
.+|++|+..+ +.+....|..|..-||..|... =.||.|...
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R~ 198 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCARR 198 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHhH
Confidence 6789998765 2347788999999999999993 139999754
No 39
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.85 E-value=8.2 Score=39.53 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=29.5
Q ss_pred CCCCCCCCcccCCC--CCCCcchhhhHHHhhhccccccccccccccc
Q 013731 147 SDISNSDISRLEVL--DEDPSAREFCVSVLRSNGLLGAVGECSVRSV 191 (437)
Q Consensus 147 dd~eeC~ic~~~~~--~ed~s~h~fCis~L~s~g~l~~v~~Cp~~~~ 191 (437)
..+.+|.+|+..-. .--.|.|.||=+||.+|---+ ..||+.|.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek--~eCPlCR~ 281 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK--AECPLCRE 281 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc--cCCCcccc
Confidence 44578999998753 234699999999999985222 34555443
No 40
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=61.63 E-value=6.4 Score=37.55 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=17.8
Q ss_pred CCeEE-eccCCCCCCCcccCCCC
Q 013731 219 STMLL-CDYCDEAFHPSCCNPRI 240 (437)
Q Consensus 219 ~~LLl-CD~Cd~ayH~~CL~PPL 240 (437)
+.+|| |..|.+|||+.-|.|+-
T Consensus 121 ~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 121 DNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred hheEEecCCccceeehhhCCCCc
Confidence 34444 99999999999998764
No 41
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=61.34 E-value=3 Score=42.76 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=37.7
Q ss_pred ccccccccC------CCCCCeEEeccCCCCCCCcccCCCCC---CCCCCCCcCccCcCCC
Q 013731 207 QSCKLCGKA------DNTSTMLLCDYCDEAFHPSCCNPRIK---ILPTDNWLCQCCSNLN 257 (437)
Q Consensus 207 ~~C~vCg~~------~~~~~LLlCD~Cd~ayH~~CL~PPL~---~iP~g~W~Cp~C~~~~ 257 (437)
..|.+|-+. +..+.|+.|..|..+||.+|+.-+.. .+-.+.|.|-.|.-+.
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~ 318 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCR 318 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhh
Confidence 456666443 34568999999999999999986544 3455789999986543
No 42
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=60.72 E-value=1.5 Score=49.64 Aligned_cols=59 Identities=17% Similarity=0.014 Sum_probs=50.3
Q ss_pred CCcccccccccccccccCCCCCCeEEeccCCCCCCCcccCC-CCCCCCCCCCcCccCcCCCCc
Q 013731 198 GTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNP-RIKILPTDNWLCQCCSNLNSN 259 (437)
Q Consensus 198 ~w~c~~c~~~~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~P-PL~~iP~g~W~Cp~C~~~~~~ 259 (437)
.|.-++-.+..|..|.+.. ..++|+.|-+.||..|+.| |++..+.|.|-|+.|..+-.+
T Consensus 498 ~~f~e~~~d~~~~~~~~~l---~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk 557 (696)
T KOG0383|consen 498 EWFLEEFHDISCEEQIKKL---HLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYK 557 (696)
T ss_pred hhhhhhcchhhHHHHHHhh---ccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHH
Confidence 3555555678899998887 7889999999999999999 999999999999999876533
No 43
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=60.53 E-value=4.8 Score=32.55 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=26.7
Q ss_pred CCCCcccCCCCC---------C------CcchhhhHHHhhhcccccccccccccc
Q 013731 151 NSDISRLEVLDE---------D------PSAREFCVSVLRSNGLLGAVGECSVRS 190 (437)
Q Consensus 151 eC~ic~~~~~~e---------d------~s~h~fCis~L~s~g~l~~v~~Cp~~~ 190 (437)
.|.||...+... + .|.|.|...||.+|- ....+||+.|
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl--~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWL--KQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHH--TTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHH--hcCCcCCCCC
Confidence 499999887211 1 378999999999886 3336888764
No 44
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=59.00 E-value=5.3 Score=33.96 Aligned_cols=30 Identities=37% Similarity=1.015 Sum_probs=25.5
Q ss_pred cccccccccCCCCCCeEEecc--CCCCCCCcccC
Q 013731 206 IQSCKLCGKADNTSTMLLCDY--CDEAFHPSCCN 237 (437)
Q Consensus 206 ~~~C~vCg~~~~~~~LLlCD~--Cd~ayH~~CL~ 237 (437)
...|.+|++. .+..+.|.. |...||..|..
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHH
Confidence 4789999987 347889998 99999999976
No 45
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=56.72 E-value=5.3 Score=32.20 Aligned_cols=49 Identities=22% Similarity=0.435 Sum_probs=18.7
Q ss_pred ccccccccCCC---CCCeEEec--cCCCCCCCcccCCCCCCCCC-------CCCcCccCcC
Q 013731 207 QSCKLCGKADN---TSTMLLCD--YCDEAFHPSCCNPRIKILPT-------DNWLCQCCSN 255 (437)
Q Consensus 207 ~~C~vCg~~~~---~~~LLlCD--~Cd~ayH~~CL~PPL~~iP~-------g~W~Cp~C~~ 255 (437)
..|.+|..... ....+.|+ .|...||+.||.--+...+. -.+.||.|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 45777776532 33568898 89999999999643322222 1346888864
No 46
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.93 E-value=9.2 Score=40.75 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=35.8
Q ss_pred cCCCCCCCCCCcccCCCCC--CCcchhhhHHHhhhccccccccccccccccc
Q 013731 144 TEGSDISNSDISRLEVLDE--DPSAREFCVSVLRSNGLLGAVGECSVRSVAS 193 (437)
Q Consensus 144 ~~~dd~eeC~ic~~~~~~e--d~s~h~fCis~L~s~g~l~~v~~Cp~~~~t~ 193 (437)
...++.-.|+||...+... ..|.|.||-.||+.+- .....||+++...
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l--~~~~~CP~Cr~~~ 70 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCL--SNQPKCPLCRAED 70 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHH--hCCCCCCCCCCcc
Confidence 3466667899999887433 4699999999998753 4346799887754
No 47
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=55.23 E-value=4.9 Score=29.30 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=20.1
Q ss_pred CCCcccCCCCC--CCcchhhhHHHhhhc
Q 013731 152 SDISRLEVLDE--DPSAREFCVSVLRSN 177 (437)
Q Consensus 152 C~ic~~~~~~e--d~s~h~fCis~L~s~ 177 (437)
|+||+..+... ..+.|.||.+||.++
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~ 28 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERL 28 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHH
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHH
Confidence 78999888655 468999999999765
No 48
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=54.96 E-value=11 Score=32.25 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=31.4
Q ss_pred CCCCCCCCCCcccCCC--------CCC-------CcchhhhHHHhhhccccc-ccccccccccc
Q 013731 145 EGSDISNSDISRLEVL--------DED-------PSAREFCVSVLRSNGLLG-AVGECSVRSVA 192 (437)
Q Consensus 145 ~~dd~eeC~ic~~~~~--------~ed-------~s~h~fCis~L~s~g~l~-~v~~Cp~~~~t 192 (437)
+..+.+.|+||-..+. .++ .|.|.|-.+||.+|=... .-++||+.|..
T Consensus 17 d~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~ 80 (85)
T PF12861_consen 17 DVANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQP 80 (85)
T ss_pred ecCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCe
Confidence 4445677888877762 111 478999999998884322 12778877753
No 49
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=54.83 E-value=8.1 Score=40.28 Aligned_cols=51 Identities=27% Similarity=0.590 Sum_probs=40.1
Q ss_pred ccccCCCCC-CeEEeccCCCCCCCcc--cCCCCCCCCC-CCCcCccCcCCCCccc
Q 013731 211 LCGKADNTS-TMLLCDYCDEAFHPSC--CNPRIKILPT-DNWLCQCCSNLNSNVS 261 (437)
Q Consensus 211 vCg~~~~~~-~LLlCD~Cd~ayH~~C--L~PPL~~iP~-g~W~Cp~C~~~~~~v~ 261 (437)
.|....+++ .|+-||.|..+||..| ++.+-...|. ..|+|..|......+.
T Consensus 64 ~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~~~ 118 (345)
T KOG1632|consen 64 KCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQDGMS 118 (345)
T ss_pred hcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhhhhhh
Confidence 455555554 8899999999999999 9988887776 4799999987664443
No 50
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.09 E-value=7.4 Score=39.41 Aligned_cols=28 Identities=21% Similarity=0.123 Sum_probs=22.3
Q ss_pred CCCCCCcccCCCC--CCCcchhhhHHHhhh
Q 013731 149 ISNSDISRLEVLD--EDPSAREFCVSVLRS 176 (437)
Q Consensus 149 ~eeC~ic~~~~~~--ed~s~h~fCis~L~s 176 (437)
+-+|.+|+..... --.|.|.||.+||..
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~ 244 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLI 244 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHH
Confidence 5679999988633 346899999999976
No 51
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.42 E-value=8.2 Score=38.33 Aligned_cols=35 Identities=14% Similarity=0.007 Sum_probs=26.8
Q ss_pred CCCCCCCCcccCCCCCC--CcchhhhHHHhhhccccc
Q 013731 147 SDISNSDISRLEVLDED--PSAREFCVSVLRSNGLLG 181 (437)
Q Consensus 147 dd~eeC~ic~~~~~~ed--~s~h~fCis~L~s~g~l~ 181 (437)
+..=+|.||+-...+.- .|.|.||=.||-+|-++.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~ 81 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTR 81 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhc
Confidence 33446999997765553 689999999999997555
No 52
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=49.42 E-value=20 Score=25.96 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=20.8
Q ss_pred CCCCcccCCCCC-----CCcchhhhHHHhhhcc
Q 013731 151 NSDISRLEVLDE-----DPSAREFCVSVLRSNG 178 (437)
Q Consensus 151 eC~ic~~~~~~e-----d~s~h~fCis~L~s~g 178 (437)
+|++|...+..+ ..+.|.||..++....
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc
Confidence 588888888332 2589999999997543
No 53
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=49.39 E-value=5.8 Score=27.78 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=21.1
Q ss_pred CCCcccCCCCC---CCcchhhhHHHhhhcc
Q 013731 152 SDISRLEVLDE---DPSAREFCVSVLRSNG 178 (437)
Q Consensus 152 C~ic~~~~~~e---d~s~h~fCis~L~s~g 178 (437)
|+||...+... ..+.|.||..||.++-
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~ 30 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWL 30 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHH
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHH
Confidence 67888876444 4689999999998764
No 54
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=46.66 E-value=10 Score=30.86 Aligned_cols=29 Identities=28% Similarity=0.815 Sum_probs=24.6
Q ss_pred ccccccccC-CCCCCeEEecc--CCCCCCCcccCC
Q 013731 207 QSCKLCGKA-DNTSTMLLCDY--CDEAFHPSCCNP 238 (437)
Q Consensus 207 ~~C~vCg~~-~~~~~LLlCD~--Cd~ayH~~CL~P 238 (437)
..|.+|++. | ..+-|.. |...||..|..-
T Consensus 37 ~~C~~C~~~~G---a~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKKGG---ACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCCCC---eEEEEeCCCCCcEEChHHHcc
Confidence 679999988 5 8888975 999999999873
No 55
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=45.29 E-value=8.4 Score=27.08 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=23.2
Q ss_pred CCCcccCCCCC---CCcchhhhHHHhhhcccccccccccc
Q 013731 152 SDISRLEVLDE---DPSAREFCVSVLRSNGLLGAVGECSV 188 (437)
Q Consensus 152 C~ic~~~~~~e---d~s~h~fCis~L~s~g~l~~v~~Cp~ 188 (437)
|+||...+... ..+.|.||.+++..+-.. ...||+
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcC
Confidence 67887776544 568899999999876322 255653
No 56
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.19 E-value=12 Score=41.09 Aligned_cols=28 Identities=11% Similarity=0.016 Sum_probs=21.3
Q ss_pred CCCCCCcccCCC--CCCCcchhhhHHHhhh
Q 013731 149 ISNSDISRLEVL--DEDPSAREFCVSVLRS 176 (437)
Q Consensus 149 ~eeC~ic~~~~~--~ed~s~h~fCis~L~s 176 (437)
.-.||||+.... ..-.|.|.||.+||.+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLq 215 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQ 215 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHH
Confidence 347999999852 2234999999999964
No 57
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=44.79 E-value=8 Score=28.55 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=28.5
Q ss_pred CCCCCCcccCCCCC--CCcchh-hhHHHhhhcccccccccccccccc
Q 013731 149 ISNSDISRLEVLDE--DPSARE-FCVSVLRSNGLLGAVGECSVRSVA 192 (437)
Q Consensus 149 ~eeC~ic~~~~~~e--d~s~h~-fCis~L~s~g~l~~v~~Cp~~~~t 192 (437)
...|.||......- ..+.|. ||..|+.++-. ....||+.+..
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~ 46 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK--RKKKCPICRQP 46 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc--cCCCCCcCChh
Confidence 35799998875322 257899 99999987653 34778877653
No 58
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=44.33 E-value=3.6 Score=48.68 Aligned_cols=48 Identities=17% Similarity=0.267 Sum_probs=38.5
Q ss_pred ccccccccCCCCCCeEEecc-CCCCCCC-cccCCCC--CCCCCCCCcCccCcCCC
Q 013731 207 QSCKLCGKADNTSTMLLCDY-CDEAFHP-SCCNPRI--KILPTDNWLCQCCSNLN 257 (437)
Q Consensus 207 ~~C~vCg~~~~~~~LLlCD~-Cd~ayH~-~CL~PPL--~~iP~g~W~Cp~C~~~~ 257 (437)
+-|.+|+..+ .+|+|++ |+.+||+ .||+-.. ..++.+-|+|+.|...+
T Consensus 429 rrl~Ie~~de---t~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq 480 (1414)
T KOG1473|consen 429 RRLRIEGMDE---TLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ 480 (1414)
T ss_pred eeeEEecCCC---cEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence 5678887554 8999998 9999999 9999332 36899999999996543
No 59
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=44.17 E-value=15 Score=23.78 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=18.1
Q ss_pred CCCcccCCC--CCCCcchhhhHHHhhhcc
Q 013731 152 SDISRLEVL--DEDPSAREFCVSVLRSNG 178 (437)
Q Consensus 152 C~ic~~~~~--~ed~s~h~fCis~L~s~g 178 (437)
|+||..... ....+.|.||..++..+-
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~ 29 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWL 29 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHH
Confidence 566665531 123588999999998663
No 60
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=43.72 E-value=15 Score=31.10 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=28.8
Q ss_pred CCCCCcccCCC--------CCC-------CcchhhhHHHhhhcccccc-ccccccccccc
Q 013731 150 SNSDISRLEVL--------DED-------PSAREFCVSVLRSNGLLGA-VGECSVRSVAS 193 (437)
Q Consensus 150 eeC~ic~~~~~--------~ed-------~s~h~fCis~L~s~g~l~~-v~~Cp~~~~t~ 193 (437)
|-|+||-+.|. .+| .|.|.|-..||.+|..... -+.||+.|.++
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 36777777762 223 4678888888888864332 36788777653
No 61
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.29 E-value=22 Score=36.89 Aligned_cols=28 Identities=7% Similarity=0.074 Sum_probs=20.6
Q ss_pred CCCCCCcccCC-CCCC------CcchhhhHHHhhh
Q 013731 149 ISNSDISRLEV-LDED------PSAREFCVSVLRS 176 (437)
Q Consensus 149 ~eeC~ic~~~~-~~ed------~s~h~fCis~L~s 176 (437)
...||+|...- ...+ .|.|.||-+|+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~ 37 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDL 37 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHH
Confidence 35799999862 1111 5999999999965
No 62
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=42.99 E-value=7.1 Score=26.48 Aligned_cols=42 Identities=21% Similarity=0.486 Sum_probs=27.5
Q ss_pred ccccccCCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcC
Q 013731 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSN 255 (437)
Q Consensus 209 C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~ 255 (437)
|.+|...- ...+.-..|...||..|+..-+.. +...||.|..
T Consensus 2 C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhh--hCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 56666554 233344568899999999855443 4567888864
No 63
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=40.94 E-value=6.7 Score=29.22 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=20.2
Q ss_pred hhhhhcccCCCCcccC--ceeeeccccccccc
Q 013731 357 QCQEVLTNNDTNVCVE--GTKCGKWRRAPFSE 386 (437)
Q Consensus 357 qc~evl~~~~~~~~~~--~~icgKWRraP~~~ 386 (437)
++.+||++ ...++++ ..|++||+..|+.+
T Consensus 2 ~Ve~Il~~-r~~~~~~~~~~ylVkW~g~~~~~ 32 (55)
T PF00385_consen 2 EVERILDH-RVVKGGNKVYEYLVKWKGYPYSE 32 (55)
T ss_dssp EEEEEEEE-EEETTEESEEEEEEEETTSSGGG
T ss_pred EEEEEEEE-EEeCCCcccEEEEEEECCCCCCC
Confidence 45677776 3333444 58999999999865
No 64
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=40.02 E-value=13 Score=29.27 Aligned_cols=15 Identities=60% Similarity=0.649 Sum_probs=13.4
Q ss_pred HhHHHHHHhhhcccC
Q 013731 422 LKYIEELKSRLGVKK 436 (437)
Q Consensus 422 lk~~~~~~~~~~~~~ 436 (437)
=|||++||+.|.+||
T Consensus 10 d~yI~~Lk~kLd~Kk 24 (56)
T PF08112_consen 10 DKYISILKSKLDEKK 24 (56)
T ss_pred HHHHHHHHHHHHHHH
Confidence 489999999999886
No 65
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.48 E-value=32 Score=31.69 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=32.3
Q ss_pred CCCCCCCCCCcccCCCCC--CCcchhhhHHHhhhcccccccccccccc
Q 013731 145 EGSDISNSDISRLEVLDE--DPSAREFCVSVLRSNGLLGAVGECSVRS 190 (437)
Q Consensus 145 ~~dd~eeC~ic~~~~~~e--d~s~h~fCis~L~s~g~l~~v~~Cp~~~ 190 (437)
...+.-.|+||+..+... ..|.|.||..||..... ..-.||..+
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr 54 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE--GPLSCPVCR 54 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC--CCcCCcccC
Confidence 345566799999998555 45999999999976553 224677777
No 66
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.42 E-value=16 Score=39.93 Aligned_cols=43 Identities=21% Similarity=0.031 Sum_probs=34.2
Q ss_pred CCCCCCCcccCCCCC-------CCcchhhhHHHhhhcccccccccccccccc
Q 013731 148 DISNSDISRLEVLDE-------DPSAREFCVSVLRSNGLLGAVGECSVRSVA 192 (437)
Q Consensus 148 d~eeC~ic~~~~~~e-------d~s~h~fCis~L~s~g~l~~v~~Cp~~~~t 192 (437)
..+.|.||...+..+ ..|.|.|+.+||++|=.. ..+||+.|..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er--~qtCP~CR~~ 339 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER--QQTCPTCRTV 339 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH--hCcCCcchhh
Confidence 356799999886432 469999999999988644 5999999984
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=35.07 E-value=25 Score=29.02 Aligned_cols=31 Identities=29% Similarity=0.669 Sum_probs=22.2
Q ss_pred cccccccccCCCCCCeEEeccCCCCCCCcccC
Q 013731 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCN 237 (437)
Q Consensus 206 ~~~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~ 237 (437)
...|.+|++.-........ -|+..||..|..
T Consensus 78 ~~~C~vC~k~l~~~~f~~~-p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVF-PCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEe-CCCeEEeccccc
Confidence 4779999998765443333 445889999975
No 68
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=34.05 E-value=25 Score=25.93 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=23.8
Q ss_pred ccccccccCC--CCCCeEEeccCCCCCCCcccC
Q 013731 207 QSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCN 237 (437)
Q Consensus 207 ~~C~vCg~~~--~~~~LLlCD~Cd~ayH~~CL~ 237 (437)
..|.+|++.- ....-+.|..|....|..|+.
T Consensus 12 ~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 12 TYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp EB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 5677777765 456788999999999999987
No 69
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.25 E-value=16 Score=38.00 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=36.0
Q ss_pred ccccCCCCCCCCCCcccCCCCCC-----CcchhhhHHHhhhccc-cccccccccccc
Q 013731 141 NRNTEGSDISNSDISRLEVLDED-----PSAREFCVSVLRSNGL-LGAVGECSVRSV 191 (437)
Q Consensus 141 s~~~~~dd~eeC~ic~~~~~~ed-----~s~h~fCis~L~s~g~-l~~v~~Cp~~~~ 191 (437)
....+-+---+|.||+..|+..| .|.|.|-..|+..|=+ +. ..||+.+.
T Consensus 315 e~~~ea~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~--~~CPvCrt 369 (374)
T COG5540 315 ERAVEADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS--NKCPVCRT 369 (374)
T ss_pred HhHHhcCCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc--ccCCccCC
Confidence 33333444468999999997665 5999999999999954 33 67887765
No 70
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=33.07 E-value=24 Score=40.30 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=28.4
Q ss_pred CCCCCCCcccCCCCCC----CcchhhhHHHhhhcccccccccccccccccc
Q 013731 148 DISNSDISRLEVLDED----PSAREFCVSVLRSNGLLGAVGECSVRSVASG 194 (437)
Q Consensus 148 d~eeC~ic~~~~~~ed----~s~h~fCis~L~s~g~l~~v~~Cp~~~~t~~ 194 (437)
..=.||.|. .++.+ .|.|-||..|++..-- ..-..||.+...|+
T Consensus 642 ~~LkCs~Cn--~R~Kd~vI~kC~H~FC~~Cvq~r~e-tRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 642 ELLKCSVCN--TRWKDAVITKCGHVFCEECVQTRYE-TRQRKCPKCNAAFG 689 (698)
T ss_pred hceeCCCcc--CchhhHHHHhcchHHHHHHHHHHHH-HhcCCCCCCCCCCC
Confidence 334599999 44444 5999999999975421 22355666655544
No 71
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=30.22 E-value=27 Score=42.20 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=26.2
Q ss_pred CcccchhhhhhcccCCCCcccCceeeecccccccccc
Q 013731 351 SISNWLQCQEVLTNNDTNVCVEGTKCGKWRRAPFSEV 387 (437)
Q Consensus 351 ~~~nWlqc~evl~~~~~~~~~~~~icgKWRraP~~~v 387 (437)
-.+...+.-|||.+.- .+. ..|++|||.+||++.
T Consensus 281 ~~~dy~~VdRIia~~~-~~d--~eYLvKW~~LpY~e~ 314 (1373)
T KOG0384|consen 281 LNKDYVIVDRIIAEQT-SKD--PEYLVKWRGLPYEEC 314 (1373)
T ss_pred hhhhhhhhhhhhhccc-CCC--ceeEEEecCCCcccc
Confidence 4556778889999732 222 999999999999984
No 72
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=29.96 E-value=43 Score=22.65 Aligned_cols=28 Identities=21% Similarity=0.565 Sum_probs=21.7
Q ss_pred cccccccCCCCCCeEEeccCCCCCCCcc
Q 013731 208 SCKLCGKADNTSTMLLCDYCDEAFHPSC 235 (437)
Q Consensus 208 ~C~vCg~~~~~~~LLlCD~Cd~ayH~~C 235 (437)
.|.+|++..+....--|+.|.-..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 4788988776554667999998889887
No 73
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=29.20 E-value=40 Score=25.33 Aligned_cols=39 Identities=18% Similarity=0.027 Sum_probs=27.0
Q ss_pred CCCCcccCCCCC--CCcchhhhHHHhhhccccccccccccccc
Q 013731 151 NSDISRLEVLDE--DPSAREFCVSVLRSNGLLGAVGECSVRSV 191 (437)
Q Consensus 151 eC~ic~~~~~~e--d~s~h~fCis~L~s~g~l~~v~~Cp~~~~ 191 (437)
-|+||...+..+ ..+.|.||-.+|.++- .+.++||+.+.
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~--~~~~~cP~~~~ 43 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTYERRAIEKWL--LSHGTDPVTGQ 43 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEEeHHHHHHHH--HHCCCCCCCcC
Confidence 488888876444 2456999999998764 22367887654
No 74
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=27.62 E-value=52 Score=36.67 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=39.1
Q ss_pred ccccccccccCCCCCCeEEeccCCCCCCCcccCCCCCCCCCC--CCcCccCcCCC
Q 013731 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTD--NWLCQCCSNLN 257 (437)
Q Consensus 205 ~~~~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g--~W~Cp~C~~~~ 257 (437)
.+-+|.-|..++ ..|.|+.|-+.||.-|+.|. ..++.. -|.|+.|...+
T Consensus 59 ~d~~cfechlpg---~vl~c~vc~Rs~h~~c~sp~-~q~r~~s~p~~~p~p~s~k 109 (588)
T KOG3612|consen 59 IDPFCFECHLPG---AVLKCIVCHRSFHENCQSPD-PQKRNYSVPSDKPQPYSFK 109 (588)
T ss_pred CCcccccccCCc---ceeeeehhhccccccccCcc-hhhccccccccCCcccccC
Confidence 457788888877 89999999999999999975 555554 49999986543
No 75
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=27.36 E-value=57 Score=27.91 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=22.5
Q ss_pred CcchhhhHHHhhhccccccccccccccccc
Q 013731 164 PSAREFCVSVLRSNGLLGAVGECSVRSVAS 193 (437)
Q Consensus 164 ~s~h~fCis~L~s~g~l~~v~~Cp~~~~t~ 193 (437)
.|.|.|-.+||..|=-.+ +.||+++.++
T Consensus 53 ~CnHaFH~HCI~rWL~Tk--~~CPld~q~w 80 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTK--GVCPLDRQTW 80 (88)
T ss_pred ecchHHHHHHHHHHHhhC--CCCCCCCcee
Confidence 588999999998874344 8999999865
No 76
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=26.56 E-value=33 Score=37.03 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCCCcccCC--CCCCCcchhhhHHHhhhccccccccccccccc
Q 013731 151 NSDISRLEV--LDEDPSAREFCVSVLRSNGLLGAVGECSVRSV 191 (437)
Q Consensus 151 eC~ic~~~~--~~ed~s~h~fCis~L~s~g~l~~v~~Cp~~~~ 191 (437)
-|.||-..- ..=+.|.|.+|..||.+|-.-...++||+.|-
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRc 413 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRC 413 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceee
Confidence 488887664 33467999999999999964444577887664
No 77
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=26.14 E-value=35 Score=32.12 Aligned_cols=21 Identities=43% Similarity=0.699 Sum_probs=17.2
Q ss_pred CceecCCCceeecCCCCcccc
Q 013731 298 SRVRIGESYQAEVPDWSDQIS 318 (437)
Q Consensus 298 s~vRiGr~fqa~Vp~W~~~~~ 318 (437)
+.+|+|..|||++|+|...-+
T Consensus 141 geirvg~~~qa~~p~~~~~~~ 161 (164)
T cd04709 141 GEIRVGPSYQAKLPDLQPFPS 161 (164)
T ss_pred eeEEecCcccccCCcccCCCC
Confidence 345999999999999876654
No 78
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=25.23 E-value=26 Score=41.45 Aligned_cols=48 Identities=13% Similarity=0.008 Sum_probs=37.7
Q ss_pred CCCCCCCCCCcccCC---------CCCCCcchhhhHHHhhhcccccccccccccccc
Q 013731 145 EGSDISNSDISRLEV---------LDEDPSAREFCVSVLRSNGLLGAVGECSVRSVA 192 (437)
Q Consensus 145 ~~dd~eeC~ic~~~~---------~~ed~s~h~fCis~L~s~g~l~~v~~Cp~~~~t 192 (437)
...--|||+||-..+ .+.-+|-|.|-.+||-.|-...+.++||++|..
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRse 1521 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSE 1521 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccc
Confidence 345568999998664 456789999999999999766667889988853
No 79
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.92 E-value=50 Score=34.84 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCCCcccCCCCCC-----CcchhhhHHHhhhc
Q 013731 151 NSDISRLEVLDED-----PSAREFCVSVLRSN 177 (437)
Q Consensus 151 eC~ic~~~~~~ed-----~s~h~fCis~L~s~ 177 (437)
.|-||+..+..+| .|.|.|--.|+..|
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpW 262 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPW 262 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhhccchhh
Confidence 8999999986655 69999999999877
No 80
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=24.66 E-value=26 Score=30.63 Aligned_cols=48 Identities=25% Similarity=0.693 Sum_probs=29.2
Q ss_pred ccccccccCCCCCCeEEe------ccC---CCCCCCcccCCCCC-----CCCCCCCcCccCcC
Q 013731 207 QSCKLCGKADNTSTMLLC------DYC---DEAFHPSCCNPRIK-----ILPTDNWLCQCCSN 255 (437)
Q Consensus 207 ~~C~vCg~~~~~~~LLlC------D~C---d~ayH~~CL~PPL~-----~iP~g~W~Cp~C~~ 255 (437)
..|..|++...+.. ..| ..| ...|=..||.-... .+..++|.||.|+.
T Consensus 8 ~~CHqCrqKt~~~~-~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFK-TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCc-eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 55667776554334 345 555 66665666554333 23457899999976
No 81
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=24.55 E-value=41 Score=36.51 Aligned_cols=54 Identities=24% Similarity=0.481 Sum_probs=38.0
Q ss_pred cccccccccccCCC---CCCeEEeccCCCCCCCcccCCCC--------CC---CCCCCCcCccCcCCC
Q 013731 204 SVIQSCKLCGKADN---TSTMLLCDYCDEAFHPSCCNPRI--------KI---LPTDNWLCQCCSNLN 257 (437)
Q Consensus 204 c~~~~C~vCg~~~~---~~~LLlCD~Cd~ayH~~CL~PPL--------~~---iP~g~W~Cp~C~~~~ 257 (437)
|....|.+|++.+. +-.-+-||.|..+-|+.|---.- .. ..++..+|..|-...
T Consensus 126 C~~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~s 193 (446)
T PF07227_consen 126 CRRCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTS 193 (446)
T ss_pred cccCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChh
Confidence 44468889988763 34788899999999999954211 11 134479999997655
No 82
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=23.36 E-value=87 Score=35.56 Aligned_cols=51 Identities=20% Similarity=0.510 Sum_probs=32.0
Q ss_pred cccccccCCCCCCeEEeccCCCCC-CCcccCCCCCCCCCCCCcCccCcCCCCcc
Q 013731 208 SCKLCGKADNTSTMLLCDYCDEAF-HPSCCNPRIKILPTDNWLCQCCSNLNSNV 260 (437)
Q Consensus 208 ~C~vCg~~~~~~~LLlCD~Cd~ay-H~~CL~PPL~~iP~g~W~Cp~C~~~~~~v 260 (437)
.|..|+... ++...||..|+... |..|-.- -..+|.+.=||++|-...+.+
T Consensus 3 ~Cp~Cg~~n-~~~akFC~~CG~~l~~~~Cp~C-G~~~~~~~~fC~~CG~~~~~~ 54 (645)
T PRK14559 3 ICPQCQFEN-PNNNRFCQKCGTSLTHKPCPQC-GTEVPVDEAHCPNCGAETGTI 54 (645)
T ss_pred cCCCCCCcC-CCCCccccccCCCCCCCcCCCC-CCCCCcccccccccCCcccch
Confidence 466666543 44555677776553 2455443 256888888999997765544
No 83
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=22.90 E-value=53 Score=23.72 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=19.8
Q ss_pred hhhhcccCCCCcccCceeeeccccccccc
Q 013731 358 CQEVLTNNDTNVCVEGTKCGKWRRAPFSE 386 (437)
Q Consensus 358 c~evl~~~~~~~~~~~~icgKWRraP~~~ 386 (437)
..+||++ ....++...|++||+..++..
T Consensus 4 v~~Il~~-r~~~~~~~~ylVkW~g~~~~~ 31 (55)
T smart00298 4 VEKILDH-RWKKKGELEYLVKWKGYSYSE 31 (55)
T ss_pred hheeeee-eecCCCcEEEEEEECCCCCcc
Confidence 5677776 213456688999999888764
No 84
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=17 Score=38.45 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=27.9
Q ss_pred CCCCCCcccCC---CCCCCcchhhhHHHhhhccccccccccccccc
Q 013731 149 ISNSDISRLEV---LDEDPSAREFCVSVLRSNGLLGAVGECSVRSV 191 (437)
Q Consensus 149 ~eeC~ic~~~~---~~ed~s~h~fCis~L~s~g~l~~v~~Cp~~~~ 191 (437)
.-.|+||+-.+ ++---|.|-||..||-.-=...| ++||..+.
T Consensus 43 ~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn-~ecptcRk 87 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN-NECPTCRK 87 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC-CCCchHHh
Confidence 34699999876 33345899999999943222222 67777654
No 85
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=22.66 E-value=27 Score=30.59 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=11.2
Q ss_pred CCcccccccccccccccC
Q 013731 198 GTGHEISVIQSCKLCGKA 215 (437)
Q Consensus 198 ~w~c~~c~~~~C~vCg~~ 215 (437)
+-.|.+|...+|..|+..
T Consensus 71 ~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 71 GRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CEEETTTTEEEETTSEEE
T ss_pred CCcCCcCCccccCccCCc
Confidence 456666666666666654
No 86
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.11 E-value=56 Score=22.58 Aligned_cols=13 Identities=23% Similarity=0.940 Sum_probs=9.8
Q ss_pred CCCcCccCcCCCC
Q 013731 246 DNWLCQCCSNLNS 258 (437)
Q Consensus 246 g~W~Cp~C~~~~~ 258 (437)
..|.||.|-..+.
T Consensus 16 ~~~~CP~Cg~~~~ 28 (33)
T cd00350 16 APWVCPVCGAPKD 28 (33)
T ss_pred CCCcCcCCCCcHH
Confidence 4599999976553
No 87
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=21.96 E-value=48 Score=23.67 Aligned_cols=31 Identities=26% Similarity=0.650 Sum_probs=23.8
Q ss_pred ccccccccCCCC--CCeEEeccCCCCCCCcccC
Q 013731 207 QSCKLCGKADNT--STMLLCDYCDEAFHPSCCN 237 (437)
Q Consensus 207 ~~C~vCg~~~~~--~~LLlCD~Cd~ayH~~CL~ 237 (437)
..|.+|++.--. ..-+.|+.|....|..|..
T Consensus 12 ~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 12 TFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred CChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 567777765433 4677899999999999976
No 88
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=21.68 E-value=28 Score=35.74 Aligned_cols=44 Identities=25% Similarity=0.546 Sum_probs=34.7
Q ss_pred cCCCCCCeEEeccCCCCCCCcccCCCC---CCCCCCCCcCccCcCCC
Q 013731 214 KADNTSTMLLCDYCDEAFHPSCCNPRI---KILPTDNWLCQCCSNLN 257 (437)
Q Consensus 214 ~~~~~~~LLlCD~Cd~ayH~~CL~PPL---~~iP~g~W~Cp~C~~~~ 257 (437)
+++-++.|+-|-.|++.=|.+||.=.. ..|-.+.|.|-+|....
T Consensus 239 kt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~cs 285 (336)
T KOG1244|consen 239 KTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCS 285 (336)
T ss_pred ccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceec
Confidence 445567899999999999999998322 24667899999998765
No 89
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=21.42 E-value=45 Score=25.58 Aligned_cols=16 Identities=31% Similarity=1.078 Sum_probs=11.6
Q ss_pred CCCCCCcCccCcCCCCc
Q 013731 243 LPTDNWLCQCCSNLNSN 259 (437)
Q Consensus 243 iP~g~W~Cp~C~~~~~~ 259 (437)
+|. +|.||.|...+..
T Consensus 31 Lp~-~w~CP~C~a~K~~ 46 (50)
T cd00730 31 LPD-DWVCPVCGAGKDD 46 (50)
T ss_pred CCC-CCCCCCCCCcHHH
Confidence 444 7999999876543
No 90
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=21.28 E-value=60 Score=26.54 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=17.8
Q ss_pred CCCCCCcccCCCCC---CCcchhhhHHHhhhccccccccccccccc
Q 013731 149 ISNSDISRLEVLDE---DPSAREFCVSVLRSNGLLGAVGECSVRSV 191 (437)
Q Consensus 149 ~eeC~ic~~~~~~e---d~s~h~fCis~L~s~g~l~~v~~Cp~~~~ 191 (437)
.-.|++|...+... -.|+|.||-.|++.. +. ..||+...
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~--~~--~~CPvC~~ 48 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDC--IG--SECPVCHT 48 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGG--TT--TB-SSS--
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHh--cC--CCCCCcCC
Confidence 34689998776544 369999999999652 22 34666553
No 91
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=20.93 E-value=24 Score=39.44 Aligned_cols=51 Identities=25% Similarity=0.580 Sum_probs=34.4
Q ss_pred cccccc--cccccccccCCC-----CCCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcCCC
Q 013731 200 GHEISV--IQSCKLCGKADN-----TSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (437)
Q Consensus 200 ~c~~c~--~~~C~vCg~~~~-----~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~~ 257 (437)
.|.-|. -.+|+.|...+- .+...-|+.|...||..|+.-. .|- ||.|..-.
T Consensus 503 ~C~lC~~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~---s~~----CPrC~R~q 560 (580)
T KOG1829|consen 503 ECDLCTGKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRRK---SPC----CPRCERRQ 560 (580)
T ss_pred hchhhccCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhcc---CCC----CCchHHHH
Confidence 355553 356899965542 2344679999999999999832 221 99997643
No 92
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=20.53 E-value=80 Score=34.33 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=35.9
Q ss_pred cccccccccCCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCCcCccCcCCC
Q 013731 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (437)
Q Consensus 206 ~~~C~vCg~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~g~W~Cp~C~~~~ 257 (437)
...|.+|.+++ .+++||.+..++|-.|.. ...|.+.|.|..|....
T Consensus 89 ~~~c~vc~~gg---s~v~~~s~~~~~~r~c~~---~~~~~c~~~~~d~~~~~ 134 (463)
T KOG1081|consen 89 PSECFVCFKGG---SLVTCKSRIQAPHRKCKP---AQLEKCSKRCTDCRAFK 134 (463)
T ss_pred cchhccccCCC---ccceeccccccccccCcC---ccCcccccCCcceeeec
Confidence 46788998887 889999888888888865 56677778877776644
Done!