BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013733
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LLI|A Chain A, Sulfhydryl Oxidase Fragment Of Human Qsox1
pdb|3LLK|A Chain A, Sulfhydryl Oxidase Fragment Of Human Qsox1
pdb|3LLK|B Chain B, Sulfhydryl Oxidase Fragment Of Human Qsox1
pdb|3LLK|C Chain C, Sulfhydryl Oxidase Fragment Of Human Qsox1
Length = 261
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 19/163 (11%)
Query: 220 WIFCRGSKNDTRGFSCGLWVLLHSLSVRI---------DDGESQFTFTAVCDFIHNFFVC 270
WI C+GS+ RGF C LWVL H L+V+ + +++ A+ ++H FF C
Sbjct: 105 WIGCQGSEPHFRGFPCSLWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHYFFGC 164
Query: 271 EECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVNERLMKLEASLKTGDPKFPKIIWPP 330
+C HF QM ++ LWLWS+HN+VN RL A + DP+FPK+ WPP
Sbjct: 165 RDCASHFEQMAAASMHRVGSPNAAVLWLWSSHNRVNARL----AGAPSEDPQFPKVQWPP 220
Query: 331 KQLCSSCYRSHHHGDMKFRQIDWDQDEVFKFLTNYYGNTLVSL 373
++LCS+C+ + + WD + FL ++ + + L
Sbjct: 221 RELCSACH------NERLDVPVWDVEATLNFLKAHFSPSNIIL 257
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 18/156 (11%)
Query: 220 WIFCRGSKNDTRGFSCGLWVLLHSLSVRI---------DDGESQFTFTAVCDFIHNFFVC 270
W+ C+GS+ RGF C LWVL H L+V+ + + Q A+ ++ FF C
Sbjct: 362 WVGCQGSEPHFRGFPCSLWVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGC 421
Query: 271 EECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVNERLMKLEASLKTGDPKFPKIIWPP 330
+ HF QM ++ + LWLW++HN+VN RL + + DP FPK+ WPP
Sbjct: 422 RDSADHFEQMAAASMHQVRSPSNAILWLWTSHNRVNARL----SGALSEDPHFPKVQWPP 477
Query: 331 KQLCSSCYRSHHHGDMKFRQIDWDQDEVFKFLTNYY 366
++LCS+C H ++ + WD FL ++
Sbjct: 478 RELCSAC-----HNELNGQVPLWDLGATLNFLKAHF 508
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 82/171 (47%), Gaps = 21/171 (12%)
Query: 220 WIFCRGSKNDTRGFSCGLWVLLHSLSVRIDDGESQFTFTAVCDFIHNFFVCEECRQHFYQ 279
W CRGS RGF CG+W+LLH+L+V + + + ++I FF C+ECR HF Q
Sbjct: 287 WRTCRGSSPQYRGFPCGMWLLLHALTV--NTPADRNVLEVIQNYIRYFFSCKECRDHFIQ 344
Query: 280 MCSSVTSPFNKTRDFALWLWSTHNQVNERLMKLEASLKTG-DPKFPKIIWPPKQLCSSCY 338
F+ D L LW HN VN RL A++K G DP PK +P + C+ CY
Sbjct: 345 F------NFSPNEDPVLQLWRAHNNVNARL----ANVKDGADPLVPKRQFPTLEACTECY 394
Query: 339 -------RSHHHGDMKFRQIDWDQDEVFKFLTNYYGNTLVSLYKDREFLRN 382
+H G +K R + WD V +N N + KD RN
Sbjct: 395 DGAGNFIEAHVTGFLKQRYL-WDPKAVGLMESNDDLNEVDPASKDANVGRN 444
>pdb|3QD9|A Chain A, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|B Chain B, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|C Chain C, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|D Chain D, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
Length = 470
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 220 WIFCRGSKNDTRGFSCGLWVLLHSLSVRIDDGESQFTFTAVCDFIHNFFVCEECRQHFYQ 279
W CRGS RGF CG+W+LLH+L+V + + + ++I FF C+E R HF Q
Sbjct: 287 WRTCRGSSPQYRGFPCGMWLLLHALTV--NTPADRNVLEVIQNYIRYFFSCKESRDHFIQ 344
Query: 280 MCSSVTSPFNKTRDFALWLWSTHNQVNERLMKLEASLKTG-DPKFPKIIWPPKQLCSSCY 338
F+ D L LW HN VN RL A++K G DP PK +P + C+ CY
Sbjct: 345 F------NFSPNEDPVLQLWRAHNNVNARL----ANVKDGADPLVPKRQFPTLEACTECY 394
Query: 339 -------RSHHHGDMKFRQIDWDQDEVFKFLTNYYGNTLVSLYKDREFLRN 382
+H G +K R + WD V +N N + KD RN
Sbjct: 395 DGAGNFIEAHVTGFLKQRYL-WDPKAVGLMESNDDLNEVDPASKDANVGRN 444
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 22/91 (24%)
Query: 6 PQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGS 65
P+YE A G I+ + +VDC NTN C+K+ V YP L
Sbjct: 41 PEYEAAATRLKG-------IVPLAKVDCT--ANTNTCNKYGVSGYPTL------------ 79
Query: 66 WEPNQEKKEIRALEDWQTADGLLTWINKQTS 96
+ ++ +E A + +TADG+++ + KQ
Sbjct: 80 -KIFRDGEEAGAYDGPRTADGIVSHLKKQAG 109
>pdb|2HJ3|A Chain A, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
pdb|2HJ3|B Chain B, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
Length = 125
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 238 WVLLHSLSVRIDDG---ESQFTFTAVCDFIHNFFVCEECRQHFYQMCSSVTSPFNKTRDF 294
W LH+L+ + + + + + + + C EC HF ++ S + +F
Sbjct: 18 WTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRSNPAQAGSQEEF 77
Query: 295 ALWLWSTHNQVNERLMKLEASLKTGDPKFPKI 326
+ WL HN VN L KL + D ++ K+
Sbjct: 78 SQWLCHVHNTVNRSLGKLVFPCERVDARWGKL 109
>pdb|3MBG|A Chain A, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|B Chain B, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|C Chain C, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
Length = 139
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 238 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRD- 293
W +LH+L+ D + + FIH F+ CEEC + + + P +TR
Sbjct: 41 WAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRLAR-NHPDTRTRAA 99
Query: 294 FALWLWSTHNQVNERLMK 311
F WL HN+VN +L K
Sbjct: 100 FTQWLCHLHNEVNRKLGK 117
>pdb|3R7C|A Chain A, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|B Chain B, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|C Chain C, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|D Chain D, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
Length = 139
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 238 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTR-D 293
W LH+L+ D + + FIH F+ CEEC + + + P TR
Sbjct: 41 WAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDR-SQPDTSTRVS 99
Query: 294 FALWLWSTHNQVNERLMK 311
F+ WL HN+VN +L K
Sbjct: 100 FSQWLCRLHNEVNRKLGK 117
>pdb|3O55|A Chain A, Crystal Structure Of Human Fad-Linked Augmenter Of Liver
Regeneration (Alr)
Length = 125
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 238 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRD- 293
W +LH+L+ D + + FIH F+ CEEC + + + P +TR
Sbjct: 27 WAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRLAR-NHPDTRTRAA 85
Query: 294 FALWLWSTHNQVNERLMK 311
F WL HN+VN +L K
Sbjct: 86 FTQWLCHLHNEVNRKLGK 103
>pdb|1OQC|A Chain A, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|B Chain B, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|C Chain C, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|D Chain D, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
Length = 125
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 238 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTR-D 293
W LH+L+ D + + FIH F+ CEEC + + + P TR
Sbjct: 27 WAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDR-SQPDTSTRVS 85
Query: 294 FALWLWSTHNQVNERLMK 311
F+ WL HN+VN +L K
Sbjct: 86 FSQWLCRLHNEVNRKLGK 103
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 22/89 (24%)
Query: 6 PQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGS 65
P+YE A G I+ + +VDC NTN C+K+ V YP L
Sbjct: 41 PEYEAAATRLKG-------IVPLAKVDCT--ANTNTCNKYGVSGYPTL------------ 79
Query: 66 WEPNQEKKEIRALEDWQTADGLLTWINKQ 94
+ ++ +E A + +TADG+++ + KQ
Sbjct: 80 -KIFRDGEEAGAYDGPRTADGIVSHLKKQ 107
>pdb|3GWL|A Chain A, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
pdb|3GWL|B Chain B, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
Length = 106
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 238 WVLLHSLSVRIDDGESQFTFTAVCDFIHNF---FVCEECRQHFYQMCSSVTSPFNKTRDF 294
W LH ++ D S +I NF C C+ H + + N + DF
Sbjct: 12 WRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDF 71
Query: 295 ALWLWSTHNQVNERLMK 311
W ++ HN VN RL K
Sbjct: 72 QYWTFAFHNNVNNRLNK 88
>pdb|3TK0|A Chain A, Mutation Of Sfalr
Length = 126
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 238 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRD- 293
W +LH+L+ D + + FIH F+ EEC + + + P +TR
Sbjct: 28 WAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDLRKRLAR-NHPDTRTRAA 86
Query: 294 FALWLWSTHNQVNERLMK 311
F WL HN+VN +L K
Sbjct: 87 FTQWLCHLHNEVNRKLGK 104
>pdb|3U2L|A Chain A, Crystal Structure Of Human Alr Mutant C142s
Length = 115
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 238 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRD- 293
W +LH+L+ D + + FIH F+ EEC + + + P +TR
Sbjct: 17 WAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDLRKRLAR-NHPDTRTRAA 75
Query: 294 FALWLWSTHNQVNERLMK 311
F WL HN+VN +L K
Sbjct: 76 FTQWLCHLHNEVNRKLGK 93
>pdb|1JR8|A Chain A, Crystal Structure Of Erv2p
pdb|1JR8|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|A Chain A, Crystal Structure Of Erv2p
pdb|1JRA|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|C Chain C, Crystal Structure Of Erv2p
pdb|1JRA|D Chain D, Crystal Structure Of Erv2p
Length = 117
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 238 WVLLHSLSVRIDDGESQFTFTAVCDFI---HNFFVCEECRQHFYQMCSSVTSPFNKTRDF 294
W H+L R D + + FI + C EC HF ++ +
Sbjct: 16 WKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAA 75
Query: 295 ALWLWSTHNQVNERLMK 311
A+W HN+VNE L K
Sbjct: 76 AMWGCHIHNKVNEYLKK 92
>pdb|3U5S|A Chain A, Selenium Substituted Human Augmenter Of Liver Regeneration
Length = 126
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 238 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRD- 293
W +LH+L+ D + FIH F+ EE + + + P +TR
Sbjct: 28 WAVLHTLAAYYPDLPTPEQQQDXAQFIHLFSKFYPXEEXAEDLRKRLAR-NHPDTRTRAA 86
Query: 294 FALWLWSTHNQVNERLMK 311
F WL HN+VN +L K
Sbjct: 87 FTQWLXHLHNEVNRKLGK 104
>pdb|3U2M|A Chain A, Crystal Structure Of Human Alr Mutant C142145S
Length = 115
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 238 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRD- 293
W +LH+L+ D + + FIH F+ EE + + + P +TR
Sbjct: 17 WAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEESAEDLRKRLAR-NHPDTRTRAA 75
Query: 294 FALWLWSTHNQVNERLMK 311
F WL HN+VN +L K
Sbjct: 76 FTQWLCHLHNEVNRKLGK 93
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 9 EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSK 60
+K++ F G++ + V+C L N LC K+ V +P L+ P K
Sbjct: 51 KKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPK 102
>pdb|3O5C|A Chain A, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|B Chain B, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|C Chain C, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|D Chain D, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
Length = 320
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 124 AVYDVEEATTTAFDIILDHKMIKSETRASLIRFLQVLVAHHP 165
+V+ +EEA T DI L K+ + ET+ ++ FL L P
Sbjct: 255 SVWTLEEAVNTMADIQLGQKLTEKETK-EMVAFLNSLTGEQP 295
>pdb|4E0H|A Chain A, Crystal Structure Of Fad Binding Domain Of Erv1 From
Saccharomyces Cerevisiae
Length = 106
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 229 DTRGFSCGLWVLLHSLSVRIDDGESQFTFTAVCDFIHNF---FVCEECRQHFYQMCSSVT 285
D W LLHS++ + + F++ F + C C + F +
Sbjct: 3 DVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIRENA 62
Query: 286 SPFNKTRDFALWLWSTHNQVNERLMK 311
+ W+ HN+VN++L K
Sbjct: 63 PQVESREELGRWMCEAHNKVNKKLRK 88
>pdb|4E0I|A Chain A, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
pdb|4E0I|B Chain B, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
pdb|4E0I|C Chain C, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
Length = 189
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 238 WVLLHSLSVRIDDGESQFTFTAVCDFIHNF---FVCEECRQHFYQMCSSVTSPFNKTRDF 294
W LLHS++ + + F++ F + C + F + +
Sbjct: 95 WTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWSAKDFEKYIRENAPQVESREEL 154
Query: 295 ALWLWSTHNQVNERLMK 311
W+ HN+VN++L K
Sbjct: 155 GRWMCEAHNKVNKKLRK 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,141,944
Number of Sequences: 62578
Number of extensions: 511069
Number of successful extensions: 990
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 24
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)