Query 013733
Match_columns 437
No_of_seqs 282 out of 1615
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:50:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1731 FAD-dependent sulfhydr 100.0 3.4E-88 7.3E-93 699.9 21.4 289 126-436 308-604 (606)
2 PF04777 Evr1_Alr: Erv1 / Alr 100.0 1.4E-29 3E-34 212.1 4.4 92 235-330 1-95 (95)
3 KOG3355 Mitochondrial sulfhydr 99.9 3.3E-23 7.2E-28 186.9 7.2 92 234-325 74-168 (177)
4 COG5054 ERV1 Mitochondrial sul 99.8 2.2E-21 4.8E-26 174.4 8.5 90 233-322 82-174 (181)
5 KOG0190 Protein disulfide isom 99.2 6.4E-12 1.4E-16 132.2 6.2 80 2-100 58-137 (493)
6 cd03007 PDI_a_ERp29_N PDIa fam 99.1 7.3E-11 1.6E-15 102.7 6.2 75 5-94 35-115 (116)
7 KOG0912 Thiol-disulfide isomer 99.1 6.7E-11 1.4E-15 116.5 4.3 79 2-96 29-107 (375)
8 cd03006 PDI_a_EFP1_N PDIa fami 99.0 5.1E-10 1.1E-14 96.9 4.9 68 2-91 45-113 (113)
9 cd03003 PDI_a_ERdj5_N PDIa fam 98.9 2.2E-09 4.9E-14 89.6 6.0 67 2-90 34-100 (101)
10 cd02996 PDI_a_ERp44 PDIa famil 98.9 2.6E-09 5.6E-14 90.4 5.9 75 2-91 34-108 (108)
11 cd03065 PDI_b_Calsequestrin_N 98.8 6.6E-09 1.4E-13 91.0 5.8 71 3-94 48-118 (120)
12 cd03002 PDI_a_MPD1_like PDI fa 98.8 9.7E-09 2.1E-13 86.3 6.5 75 2-91 34-108 (109)
13 PF00085 Thioredoxin: Thioredo 98.8 8.2E-09 1.8E-13 85.0 5.6 71 2-94 33-103 (103)
14 cd03004 PDI_a_ERdj5_C PDIa fam 98.7 1.1E-08 2.4E-13 85.6 5.2 69 2-91 35-104 (104)
15 cd02994 PDI_a_TMX PDIa family, 98.7 2.5E-08 5.4E-13 83.0 6.0 70 2-93 32-101 (101)
16 TIGR01126 pdi_dom protein disu 98.6 5.9E-08 1.3E-12 79.9 6.5 74 2-95 29-102 (102)
17 cd03001 PDI_a_P5 PDIa family, 98.6 5.8E-08 1.3E-12 80.5 6.1 69 2-91 34-102 (103)
18 cd03005 PDI_a_ERp46 PDIa famil 98.6 4.8E-08 1E-12 80.8 5.2 71 2-91 32-102 (102)
19 cd02993 PDI_a_APS_reductase PD 98.6 7.2E-08 1.6E-12 82.1 5.9 71 2-91 37-109 (109)
20 cd02999 PDI_a_ERp44_like PDIa 98.5 8.9E-08 1.9E-12 80.7 4.7 67 2-91 34-100 (100)
21 cd02995 PDI_a_PDI_a'_C PDIa fa 98.5 1.5E-07 3.3E-12 77.9 6.0 71 2-91 34-104 (104)
22 KOG4277 Uncharacterized conser 98.5 6.7E-08 1.5E-12 95.4 4.4 76 2-97 59-134 (468)
23 PTZ00102 disulphide isomerase; 98.5 1.4E-07 3.1E-12 99.3 6.6 78 2-99 65-142 (477)
24 cd02997 PDI_a_PDIR PDIa family 98.5 1.9E-07 4E-12 77.4 5.5 72 2-91 33-104 (104)
25 cd02963 TRX_DnaJ TRX domain, D 98.5 1.7E-07 3.8E-12 80.2 5.1 71 2-93 40-110 (111)
26 cd02992 PDI_a_QSOX PDIa family 98.5 3.2E-07 6.9E-12 79.1 6.5 73 2-87 35-108 (114)
27 cd02998 PDI_a_ERp38 PDIa famil 98.4 3.9E-07 8.4E-12 75.4 6.3 72 2-91 34-105 (105)
28 PTZ00443 Thioredoxin domain-co 98.4 2.6E-07 5.6E-12 89.3 5.8 73 2-96 68-140 (224)
29 KOG0190 Protein disulfide isom 98.4 3.5E-07 7.6E-12 96.8 6.7 75 2-96 400-474 (493)
30 cd02956 ybbN ybbN protein fami 98.4 4.2E-07 9.1E-12 74.8 5.4 69 2-92 28-96 (96)
31 TIGR01130 ER_PDI_fam protein d 98.4 5.1E-07 1.1E-11 94.0 6.7 80 2-99 34-113 (462)
32 cd03000 PDI_a_TMX3 PDIa family 98.4 9.7E-07 2.1E-11 74.2 6.5 73 2-94 31-103 (104)
33 cd02961 PDI_a_family Protein D 98.3 8.4E-07 1.8E-11 71.8 5.9 71 2-91 31-101 (101)
34 KOG0191 Thioredoxin/protein di 98.3 7.6E-07 1.6E-11 92.1 6.6 78 2-101 63-140 (383)
35 PLN02309 5'-adenylylsulfate re 98.3 7.6E-07 1.6E-11 94.2 6.5 73 2-93 381-455 (457)
36 TIGR00424 APS_reduc 5'-adenyly 98.3 1.3E-06 2.8E-11 92.6 6.4 74 2-93 387-461 (463)
37 TIGR01068 thioredoxin thioredo 98.2 2.9E-06 6.3E-11 69.4 6.3 72 2-95 30-101 (101)
38 KOG0191 Thioredoxin/protein di 98.2 1.9E-06 4.1E-11 89.2 6.0 79 1-98 177-255 (383)
39 PRK09381 trxA thioredoxin; Pro 98.2 3.2E-06 6.9E-11 71.4 5.9 72 2-95 37-108 (109)
40 PRK10996 thioredoxin 2; Provis 98.1 4.9E-06 1.1E-10 74.3 6.0 71 2-94 68-138 (139)
41 PTZ00102 disulphide isomerase; 98.0 7.9E-06 1.7E-10 86.1 7.1 76 2-96 391-466 (477)
42 PRK11509 hydrogenase-1 operon 98.0 1.3E-05 2.8E-10 71.4 6.1 70 6-96 56-125 (132)
43 cd02965 HyaE HyaE family; HyaE 98.0 9.6E-06 2.1E-10 70.2 4.8 47 2-57 45-91 (111)
44 TIGR01130 ER_PDI_fam protein d 97.9 3.2E-05 6.9E-10 80.6 7.6 78 2-98 380-457 (462)
45 COG3118 Thioredoxin domain-con 97.8 3.2E-05 6.9E-10 77.0 6.1 74 2-97 59-132 (304)
46 KOG0910 Thioredoxin-like prote 97.7 5.6E-05 1.2E-09 68.4 5.6 73 2-96 77-149 (150)
47 cd02948 TRX_NDPK TRX domain, T 97.7 6.8E-05 1.5E-09 63.0 5.5 69 2-93 33-101 (102)
48 cd02982 PDI_b'_family Protein 97.7 7.5E-05 1.6E-09 61.9 5.2 73 2-94 28-102 (103)
49 cd02953 DsbDgamma DsbD gamma f 97.6 0.00011 2.4E-09 61.4 5.3 72 2-91 27-103 (104)
50 cd02954 DIM1 Dim1 family; Dim1 97.6 6.4E-05 1.4E-09 65.4 3.7 49 2-59 30-78 (114)
51 cd02949 TRX_NTR TRX domain, no 97.6 9.8E-05 2.1E-09 61.2 4.7 69 2-92 29-97 (97)
52 cd02962 TMX2 TMX2 family; comp 97.6 6.4E-05 1.4E-09 68.6 3.8 50 2-59 63-118 (152)
53 cd02950 TxlA TRX-like protein 97.6 0.0003 6.5E-09 63.1 8.0 76 2-96 36-111 (142)
54 cd02947 TRX_family TRX family; 97.5 0.00014 3E-09 57.4 5.1 67 2-91 26-92 (93)
55 PHA02278 thioredoxin-like prot 97.5 0.00014 3.1E-09 61.9 4.6 69 2-90 30-100 (103)
56 TIGR00411 redox_disulf_1 small 97.4 0.00028 6.1E-09 55.9 5.7 67 2-94 15-81 (82)
57 cd02985 TRX_CDSP32 TRX family, 97.4 0.00015 3.2E-09 61.2 3.8 48 2-57 31-79 (103)
58 cd02957 Phd_like Phosducin (Ph 97.3 0.00017 3.6E-09 61.8 3.4 47 2-59 40-86 (113)
59 PTZ00051 thioredoxin; Provisio 97.3 0.00023 5E-09 58.5 3.7 47 2-58 34-80 (98)
60 cd02984 TRX_PICOT TRX domain, 97.3 0.00026 5.7E-09 57.9 3.6 47 2-57 30-76 (97)
61 TIGR02187 GlrX_arch Glutaredox 97.1 0.00082 1.8E-08 64.2 5.3 74 2-96 38-112 (215)
62 cd02989 Phd_like_TxnDC9 Phosdu 97.0 0.00079 1.7E-08 58.0 4.7 48 2-59 38-85 (113)
63 PLN00410 U5 snRNP protein, DIM 97.0 0.0012 2.7E-08 59.5 5.6 46 2-56 39-85 (142)
64 KOG0907 Thioredoxin [Posttrans 96.9 0.001 2.3E-08 57.1 3.9 46 2-57 37-82 (106)
65 cd02975 PfPDO_like_N Pyrococcu 96.9 0.0018 3.9E-08 55.7 5.2 73 2-95 38-110 (113)
66 PF07912 ERp29_N: ERp29, N-ter 96.5 0.0083 1.8E-07 52.8 7.0 80 6-102 39-126 (126)
67 cd02986 DLP Dim1 family, Dim1- 96.1 0.0053 1.1E-07 53.5 3.5 47 2-57 30-76 (114)
68 PHA03005 sulfhydryl oxidase; P 96.0 0.027 5.8E-07 46.9 6.9 50 235-284 8-57 (96)
69 cd02987 Phd_like_Phd Phosducin 95.7 0.0097 2.1E-07 55.4 3.7 47 2-59 99-145 (175)
70 cd02951 SoxW SoxW family; SoxW 95.5 0.02 4.3E-07 49.4 4.7 77 2-96 30-120 (125)
71 KOG0913 Thiol-disulfide isomer 95.1 0.075 1.6E-06 51.6 7.5 127 2-156 55-181 (248)
72 TIGR02187 GlrX_arch Glutaredox 95.0 0.039 8.6E-07 52.6 5.5 65 3-93 150-214 (215)
73 KOG0908 Thioredoxin-like prote 94.8 0.045 9.9E-07 53.7 5.2 75 2-100 37-111 (288)
74 cd02952 TRP14_like Human TRX-r 94.5 0.058 1.3E-06 47.3 4.7 48 2-56 44-97 (119)
75 PRK00293 dipZ thiol:disulfide 94.2 0.092 2E-06 57.6 6.5 74 3-94 491-569 (571)
76 PF13848 Thioredoxin_6: Thiore 94.1 0.16 3.4E-06 46.1 6.9 68 5-97 9-77 (184)
77 cd02983 P5_C P5 family, C-term 94.0 0.22 4.8E-06 44.1 7.4 74 4-97 42-117 (130)
78 cd02973 TRX_GRX_like Thioredox 93.4 0.092 2E-06 40.1 3.5 43 3-55 16-58 (67)
79 cd02988 Phd_like_VIAF Phosduci 93.2 0.094 2E-06 49.6 3.9 45 2-59 118-162 (192)
80 PRK03147 thiol-disulfide oxido 92.7 0.29 6.2E-06 44.2 6.2 73 3-93 78-170 (173)
81 TIGR01295 PedC_BrcD bacterioci 92.5 0.28 6E-06 42.9 5.6 68 2-91 39-120 (122)
82 PF01216 Calsequestrin: Calseq 92.3 0.17 3.7E-06 51.8 4.5 112 8-167 79-195 (383)
83 PTZ00062 glutaredoxin; Provisi 91.9 0.31 6.8E-06 46.6 5.6 63 2-96 33-95 (204)
84 cd03067 PDI_b_PDIR_N PDIb fami 91.6 0.29 6.3E-06 41.8 4.5 67 7-93 39-110 (112)
85 PHA02125 thioredoxin-like prot 91.4 0.14 3.1E-06 40.5 2.2 27 26-54 25-51 (75)
86 smart00594 UAS UAS domain. 91.0 0.41 9E-06 41.5 5.0 60 25-91 62-121 (122)
87 cd02981 PDI_b_family Protein D 90.2 0.8 1.7E-05 37.3 5.9 65 4-93 32-96 (97)
88 PF13098 Thioredoxin_2: Thiore 90.1 0.15 3.3E-06 42.6 1.4 41 39-91 72-112 (112)
89 PF13848 Thioredoxin_6: Thiore 90.1 0.54 1.2E-05 42.5 5.2 70 4-93 113-184 (184)
90 KOG2603 Oligosaccharyltransfer 90.0 0.79 1.7E-05 46.4 6.6 86 4-97 82-168 (331)
91 cd02958 UAS UAS family; UAS is 89.5 0.68 1.5E-05 39.3 5.1 68 10-95 44-111 (114)
92 cd03026 AhpF_NTD_C TRX-GRX-lik 88.8 0.61 1.3E-05 38.5 4.1 41 5-55 31-71 (89)
93 TIGR00412 redox_disulf_2 small 87.3 0.59 1.3E-05 37.1 3.0 42 2-55 14-55 (76)
94 cd03073 PDI_b'_ERp72_ERp57 PDI 86.9 1.6 3.5E-05 37.6 5.7 71 3-94 35-110 (111)
95 cd02991 UAS_ETEA UAS family, E 86.5 1.2 2.7E-05 38.6 4.8 70 10-95 44-113 (116)
96 TIGR02740 TraF-like TraF-like 86.3 1.4 3E-05 44.0 5.7 77 2-96 182-265 (271)
97 cd03072 PDI_b'_ERp44 PDIb' fam 85.7 2.1 4.5E-05 36.8 5.8 73 3-95 31-108 (111)
98 cd02959 ERp19 Endoplasmic reti 85.0 0.85 1.8E-05 39.4 3.1 49 2-58 35-85 (117)
99 PRK14018 trifunctional thiored 83.6 1.9 4.1E-05 46.9 5.7 71 2-92 72-170 (521)
100 cd03009 TryX_like_TryX_NRX Try 83.2 1.4 3.1E-05 37.9 3.7 54 2-57 34-107 (131)
101 cd02966 TlpA_like_family TlpA- 83.0 2.5 5.4E-05 34.0 5.0 50 2-57 35-105 (116)
102 KOG0914 Thioredoxin-like prote 80.7 1.3 2.8E-05 43.0 2.7 48 2-57 160-213 (265)
103 cd01659 TRX_superfamily Thiore 79.4 3.5 7.5E-05 28.5 4.1 33 25-59 28-63 (69)
104 cd03069 PDI_b_ERp57 PDIb famil 79.3 5 0.00011 33.7 5.6 71 4-94 33-103 (104)
105 PF07449 HyaE: Hydrogenase-1 e 72.5 1.7 3.6E-05 37.6 0.9 34 25-60 60-93 (107)
106 cd03011 TlpA_like_ScsD_MtbDsbE 70.6 7.8 0.00017 32.6 4.7 39 38-89 82-120 (123)
107 cd02964 TryX_like_family Trypa 67.6 6.3 0.00014 34.1 3.6 52 2-57 33-107 (132)
108 cd02955 SSP411 TRX domain, SSP 67.0 6.6 0.00014 34.5 3.5 40 10-58 42-89 (124)
109 PRK10877 protein disulfide iso 66.3 4.5 9.8E-05 39.3 2.6 42 36-94 189-230 (232)
110 cd03010 TlpA_like_DsbE TlpA-li 63.3 9.5 0.00021 32.4 3.8 19 38-56 89-107 (127)
111 PLN02919 haloacid dehalogenase 62.8 14 0.0003 43.8 6.2 76 2-95 436-536 (1057)
112 COG4232 Thiol:disulfide interc 62.4 16 0.00035 40.2 6.1 58 25-94 508-567 (569)
113 PF04805 Pox_E10: E10-like pro 61.6 11 0.00023 29.9 3.3 39 266-304 14-53 (70)
114 PF03918 CcmH: Cytochrome C bi 59.8 6.9 0.00015 35.6 2.4 18 353-370 74-91 (148)
115 PF02439 Adeno_E3_CR2: Adenovi 59.4 9.2 0.0002 26.9 2.4 27 403-429 8-36 (38)
116 cd03068 PDI_b_ERp72 PDIb famil 57.9 18 0.00038 30.8 4.5 70 5-93 35-106 (107)
117 cd03066 PDI_b_Calsequestrin_mi 57.7 33 0.00072 28.4 6.1 65 5-94 35-100 (102)
118 TIGR03143 AhpF_homolog putativ 55.7 16 0.00034 39.9 4.8 64 5-91 491-554 (555)
119 PF13192 Thioredoxin_3: Thiore 54.1 26 0.00057 27.5 4.6 47 26-92 29-76 (76)
120 TIGR00385 dsbE periplasmic pro 53.1 17 0.00036 33.2 3.8 46 39-96 127-172 (173)
121 TIGR02738 TrbB type-F conjugat 53.1 33 0.00072 31.2 5.7 75 2-94 66-152 (153)
122 cd02967 mauD Methylamine utili 51.4 12 0.00025 31.1 2.3 47 2-54 37-83 (114)
123 PF02114 Phosducin: Phosducin; 51.0 28 0.0006 34.7 5.2 44 5-59 165-208 (265)
124 PRK15317 alkyl hydroperoxide r 49.9 26 0.00056 37.8 5.2 69 5-96 131-199 (517)
125 PF12172 DUF35_N: Rubredoxin-l 49.1 3.1 6.8E-05 28.5 -1.3 16 325-340 19-34 (37)
126 PF13728 TraF: F plasmid trans 49.0 24 0.00051 34.0 4.2 70 2-89 136-212 (215)
127 COG2143 Thioredoxin-related pr 48.9 19 0.00041 33.4 3.3 18 39-56 105-122 (182)
128 PRK10144 formate-dependent nit 46.8 39 0.00085 30.1 4.9 17 353-369 74-90 (126)
129 cd03023 DsbA_Com1_like DsbA fa 44.4 15 0.00031 31.8 1.9 36 38-91 118-153 (154)
130 PF13462 Thioredoxin_4: Thiore 44.2 17 0.00037 31.9 2.3 37 39-93 126-162 (162)
131 cd03020 DsbA_DsbC_DsbG DsbA fa 43.0 13 0.00029 34.6 1.5 38 37-91 160-197 (197)
132 COG0526 TrxA Thiol-disulfide i 42.7 31 0.00067 26.8 3.5 47 2-56 48-96 (127)
133 PF08114 PMP1_2: ATPase proteo 41.8 26 0.00056 25.2 2.4 22 409-431 17-38 (43)
134 TIGR02196 GlrX_YruB Glutaredox 41.5 29 0.00063 25.7 2.9 31 26-56 25-57 (74)
135 KOG1672 ATP binding protein [P 40.7 29 0.00064 33.2 3.4 45 5-59 103-147 (211)
136 PF12768 Rax2: Cortical protei 39.1 36 0.00077 34.3 3.9 41 395-435 224-264 (281)
137 TIGR03147 cyt_nit_nrfF cytochr 39.0 56 0.0012 29.1 4.7 17 353-369 74-90 (126)
138 PRK13728 conjugal transfer pro 38.7 67 0.0014 30.3 5.4 77 2-96 85-172 (181)
139 PF09049 SNN_transmemb: Stanni 37.6 34 0.00074 22.8 2.3 18 401-421 13-30 (33)
140 PF15099 PIRT: Phosphoinositid 36.5 18 0.00039 32.1 1.2 28 407-434 83-113 (129)
141 TIGR03140 AhpF alkyl hydropero 34.1 68 0.0015 34.6 5.4 70 5-97 132-201 (515)
142 PF15330 SIT: SHP2-interacting 33.7 65 0.0014 27.8 4.1 28 405-432 5-32 (107)
143 PF14316 DUF4381: Domain of un 32.6 36 0.00077 30.5 2.5 25 410-434 28-52 (146)
144 PF06522 B12D: NADH-ubiquinone 32.5 40 0.00086 26.9 2.5 21 399-419 5-25 (73)
145 PRK11657 dsbG disulfide isomer 29.9 32 0.00069 33.8 1.8 43 37-92 207-249 (251)
146 PF15284 PAGK: Phage-encoded v 28.5 75 0.0016 24.7 3.2 30 403-433 7-36 (61)
147 PF11980 DUF3481: Domain of un 28.2 56 0.0012 27.1 2.7 24 404-427 22-45 (87)
148 cd03012 TlpA_like_DipZ_like Tl 26.5 83 0.0018 26.7 3.7 48 3-56 40-112 (126)
149 PRK15412 thiol:disulfide inter 25.3 77 0.0017 29.2 3.4 45 39-95 132-176 (185)
150 PF05214 Baculo_p33: Baculovir 24.0 62 0.0013 32.0 2.6 43 237-279 108-163 (250)
151 PF13905 Thioredoxin_8: Thiore 23.8 92 0.002 24.7 3.3 49 3-56 18-89 (95)
152 COG3531 Predicted protein-disu 23.4 69 0.0015 30.8 2.7 43 39-95 164-209 (212)
153 PRK10561 glycerol-3-phosphate 22.5 1E+02 0.0022 30.1 4.0 32 401-432 248-279 (280)
154 PF14986 DUF4514: Domain of un 22.3 99 0.0021 23.5 2.8 22 401-423 23-44 (61)
155 TIGR02739 TraF type-F conjugat 22.1 1.9E+02 0.004 28.8 5.6 75 2-94 166-247 (256)
156 PF13743 Thioredoxin_5: Thiore 21.3 44 0.00095 30.9 1.0 19 39-57 137-155 (176)
157 PF09835 DUF2062: Uncharacteri 20.8 1.1E+02 0.0024 27.4 3.4 29 406-434 126-154 (154)
No 1
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.4e-88 Score=699.86 Aligned_cols=289 Identities=42% Similarity=0.735 Sum_probs=251.4
Q ss_pred HHHHHHHHHHHHHHh-hccccCccchHHHHHHHHHHHHhcCCCccccchHHHHHhhhhcCCCCccchhhhHHhhcCCCCC
Q 013733 126 YDVEEATTTAFDIIL-DHKMIKSETRASLIRFLQVLVAHHPSRRCRKGSAKVLVNFDDFSPSHMQSADKQEVVNNNGKGG 204 (437)
Q Consensus 126 ~DlE~a~~~al~~~l-~~~~l~ge~l~AL~~fl~~l~~~~P~~~~r~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (437)
.|||+|+.++|++++ +..+|+|++|.||++|+.+|++|+|++. ....++..+++ |+.....-.. ..+++.
T Consensus 308 aDLeqAm~~~L~~Ev~R~~~i~g~~l~aLk~f~~ll~r~~P~~~---~~~~l~~~Ld~-~~~~~~~it~-----~~f~d~ 378 (606)
T KOG1731|consen 308 ADLEQAMSYILHIEVPRTALIRGENLAALKEFMHLLRRYFPGTA---DGRRLVNSLDN-SLSARQVITG-----EWFRDV 378 (606)
T ss_pred hhHHHHHHHHHHHhhcchhhccCchHHHHHHHHHHHHHhCCCCh---hHHHHHHHHhh-hhhhceeecH-----HHHHHH
Confidence 399999999999766 8899999999999999999999999974 33345555544 4422221111 234556
Q ss_pred CCCccccCCCCC-CCCceeccCCCCCcCcccchHHHHHHHHhcccCCCCC----HHHHHHHHHHHHhcCCChHHHHHHHH
Q 013733 205 LGNFPICGKEVP-RGYWIFCRGSKNDTRGFSCGLWVLLHSLSVRIDDGES----QFTFTAVCDFIHNFFVCEECRQHFYQ 279 (437)
Q Consensus 205 l~~~~~~g~~~~-~~~w~~C~gS~p~~Rgy~CglW~LfH~ltv~~~~~~~----~~~~~~i~~fv~~Ff~C~~C~~hF~~ 279 (437)
+++.+.+|.++| +++|+||+||+|++||||||||||||+|||++.+++. ..+++.+.+||++||+|.+||+||++
T Consensus 379 ~~~~~~~g~p~p~~~~w~gC~GS~P~~RGftCgLWTLFH~lTV~Aa~~~~~~~~~~~l~~l~~~vk~FFgC~dC~~HF~~ 458 (606)
T KOG1731|consen 379 LDDLEACGSPFPKEGTWVGCAGSKPHLRGFTCGLWTLFHALTVEAAKQEVHFAFTPILDVLHGFVKNFFGCTDCREHFQK 458 (606)
T ss_pred HHHHHHhCCCccccceeEeecCCCCccCCcchHHHHHHHHhhhhhcccccccchhccchhhHHHHHHccCchHHHHHHHH
Confidence 677788999999 5699999999999999999999999999999987653 34678888899999999999999999
Q ss_pred HHhcCC-CCCCChhHHHHHHHHhhhHHhhhhcCcccCCCCCCCCCCCCCCCCCCCChhhhccCCCCCCccCCCCCCHHHH
Q 013733 280 MCSSVT-SPFNKTRDFALWLWSTHNQVNERLMKLEASLKTGDPKFPKIIWPPKQLCSSCYRSHHHGDMKFRQIDWDQDEV 358 (437)
Q Consensus 280 ~~~~~~-~~v~s~~~~vlWLW~~HN~VN~rL~~~~~~~~~~Dp~fpk~q~P~~~~Cp~C~~~~~~~~~~~~~~~w~~~~V 358 (437)
|+.+.. ..|.+++|++||||++||+||+||+|+ .||||+|||+|||++++||+||..+ ++||+|+|
T Consensus 459 Ma~~~~~~~V~~ped~vLWLW~aHN~VN~RLaGd----~TeDPkFPK~QFP~kelCp~Cy~~~---------~ewd~d~v 525 (606)
T KOG1731|consen 459 MATRRKLHRVRRPEDVVLWLWSAHNEVNARLAGD----STEDPKFPKVQFPPKELCPDCYSSS---------IEWDEDEV 525 (606)
T ss_pred HHHhhcccccCChhhhhhHHHHHhhHHHHHhccC----CCCCCCCCcccCCChhhChhhhcCC---------CCcCHHHH
Confidence 999876 789999999999999999999999997 8999999999999999999999874 47999999
Q ss_pred HHHHHHHhCCCcccccccccccc-CCCcccccccccccccceeeeHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCCCC
Q 013733 359 FKFLTNYYGNTLVSLYKDREFLR-NDGIDGALEDLVVSTNAVVVPVGAALAIALASCAFGALACYWRSQQKNRKPRRSW 436 (437)
Q Consensus 359 l~fL~~~Y~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (437)
|+||++|||...+|.|++.+... +++.....++....+|..+||.|++.+|+.|+|+||+|||+||+|+|+|||.++.
T Consensus 526 l~FLk~yY~ik~~S~~~l~~~~~~~~~~~k~~~~~k~~~n~~~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 604 (606)
T KOG1731|consen 526 LKFLKKYYSIKPVSRYALPGESRSKEEEGKKLEAQKRPTNAFVVPAGAALALAAASCAFGALACYQRTQKKNRKYQYNP 604 (606)
T ss_pred HHHHHHHcCCCcccccccccccccccccccchhhhccCcccccccccchhhhhhhhhhhhhccccccChhhhhcccCCC
Confidence 99999999999999999999874 4444445788888999999999999999999999999999999999999998764
No 2
>PF04777 Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae (Baker's yeast) mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian ortholog of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane and it is thought to operate downstream of the mitochondrial ABC transporter [].; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process; PDB: 3MBG_C 3U2L_A 3U2M_A 3QD9_D 3QCP_A 3O55_A 2HJ3_B 3GWN_A 3T58_D 3T59_B ....
Probab=99.95 E-value=1.4e-29 Score=212.14 Aligned_cols=92 Identities=41% Similarity=0.820 Sum_probs=84.4
Q ss_pred chHHHHHHHHhcccCCCCCH---HHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCCChhHHHHHHHHhhhHHhhhhcC
Q 013733 235 CGLWVLLHSLSVRIDDGESQ---FTFTAVCDFIHNFFVCEECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVNERLMK 311 (437)
Q Consensus 235 CglW~LfH~ltv~~~~~~~~---~~~~~i~~fv~~Ff~C~~C~~hF~~~~~~~~~~v~s~~~~vlWLW~~HN~VN~rL~~ 311 (437)
||+|+|||++|+++|+.|+. .++.+|.+++.+||||++|+.||.+++++.++.++|++++++|||++||.||+||+|
T Consensus 1 c~~W~llH~~a~~~p~~p~~~~~~~~~~~~~~~~~~~pC~~C~~hf~~~~~~~~~~v~sr~~l~~Wl~~~HN~VN~rL~k 80 (95)
T PF04777_consen 1 CGLWTLLHTLAAYYPENPTEEEKQVMEAFFRSFPHFFPCEECRNHFSKYIKKNPPQVSSREDLVLWLWRAHNKVNERLGK 80 (95)
T ss_dssp HHHHHHHHHHHHTSHSSHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSGGGGSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999998874 467777788889999999999999999998889999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCC
Q 013733 312 LEASLKTGDPKFPKIIWPP 330 (437)
Q Consensus 312 ~~~~~~~~Dp~fpk~q~P~ 330 (437)
+.+ ++||+| |.|||+
T Consensus 81 ~~~---~~~~~~-~~~~~~ 95 (95)
T PF04777_consen 81 PIF---CDDPKF-KEQWPT 95 (95)
T ss_dssp STT---TSGTTH-HHHHT-
T ss_pred CCC---CCcHHH-HhHcCC
Confidence 953 789999 999996
No 3
>KOG3355 consensus Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.3e-23 Score=186.87 Aligned_cols=92 Identities=27% Similarity=0.514 Sum_probs=85.8
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHH---hcCCChHHHHHHHHHHhcCCCCCCChhHHHHHHHHhhhHHhhhhc
Q 013733 234 SCGLWVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVNERLM 310 (437)
Q Consensus 234 ~CglW~LfH~ltv~~~~~~~~~~~~~i~~fv~---~Ff~C~~C~~hF~~~~~~~~~~v~s~~~~vlWLW~~HN~VN~rL~ 310 (437)
--+.|+|||+|+++||+.|+.++.+.|+.||. .||||.+|++||++.+.+++++++||+++..|+|.+||.||++|+
T Consensus 74 GRstWtllHT~aA~yP~~PT~eqk~~~~sFi~~~s~~yPC~eCa~dl~K~l~~nppq~~SRe~~~~W~C~vHN~VNekLg 153 (177)
T KOG3355|consen 74 GRSTWTLLHTLAANYPDRPTPEQKDDMRSFIHLFSKFYPCGECAKDLRKILRKNPPQTSSREAFTQWLCHVHNKVNEKLG 153 (177)
T ss_pred hHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHcC
Confidence 34689999999999999999999999999998 579999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCCCCC
Q 013733 311 KLEASLKTGDPKFPK 325 (437)
Q Consensus 311 ~~~~~~~~~Dp~fpk 325 (437)
|+.|+|.+.|.+|-.
T Consensus 154 Kp~fdC~~v~erw~~ 168 (177)
T KOG3355|consen 154 KPKFDCRTVDERWRD 168 (177)
T ss_pred CCCCchhHHHHHHhc
Confidence 999999987776543
No 4
>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.2e-21 Score=174.39 Aligned_cols=90 Identities=21% Similarity=0.406 Sum_probs=83.2
Q ss_pred ccchHHHHHHHHhcccCCCCCHHHHHHHHHHHH---hcCCChHHHHHHHHHHhcCCCCCCChhHHHHHHHHhhhHHhhhh
Q 013733 233 FSCGLWVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVNERL 309 (437)
Q Consensus 233 y~CglW~LfH~ltv~~~~~~~~~~~~~i~~fv~---~Ff~C~~C~~hF~~~~~~~~~~v~s~~~~vlWLW~~HN~VN~rL 309 (437)
.--+.|+|||+|+++||+.|+.++...|+.|+. ++|||-+|++||++.+..++++|+||+++..|+|++||.||+||
T Consensus 82 lGRssWtllHtv~A~yP~~PT~~qr~~l~sFl~~~s~~yPCgeCs~~f~K~l~~~ppqv~SRea~~~W~CevHN~VNekL 161 (181)
T COG5054 82 LGRSSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYPPQVSSREAATTWACEVHNKVNEKL 161 (181)
T ss_pred HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhheeecHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999999998 46999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCC
Q 013733 310 MKLEASLKTGDPK 322 (437)
Q Consensus 310 ~~~~~~~~~~Dp~ 322 (437)
+|+.|+|.+-+.+
T Consensus 162 ~Kp~~dC~~~~e~ 174 (181)
T COG5054 162 GKPKFDCDTWNER 174 (181)
T ss_pred CCCCcccchhHHH
Confidence 9999999875544
No 5
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=6.4e-12 Score=132.19 Aligned_cols=80 Identities=25% Similarity=0.456 Sum_probs=69.7
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
|+++|+|+++|..+++.+ ..|.+|+|||+.+ .++|.+|+|+|||||++|+ +|.. ...|.|+
T Consensus 58 k~LaPey~kAA~~Lke~~----s~i~LakVDat~~--~~~~~~y~v~gyPTlkiFr-----nG~~--------~~~Y~G~ 118 (493)
T KOG0190|consen 58 KALAPEYEKAATELKEEG----SPVKLAKVDATEE--SDLASKYEVRGYPTLKIFR-----NGRS--------AQDYNGP 118 (493)
T ss_pred hhhCcHHHHHHHHhhccC----CCceeEEeecchh--hhhHhhhcCCCCCeEEEEe-----cCCc--------ceeccCc
Confidence 689999999999999865 2699999999987 9999999999999999984 5531 2479999
Q ss_pred CCHHHHHHHHHHhcccCCC
Q 013733 82 QTADGLLTWINKQTSRSYG 100 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~~~~~ 100 (437)
|++++|++|+.++.+++..
T Consensus 119 r~adgIv~wl~kq~gPa~~ 137 (493)
T KOG0190|consen 119 READGIVKWLKKQSGPASK 137 (493)
T ss_pred ccHHHHHHHHHhccCCCce
Confidence 9999999999999887554
No 6
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.13 E-value=7.3e-11 Score=102.71 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=58.3
Q ss_pred hhHHHHHHHHhCCCCCCCCcceEEEEEeccc---ccCcchhccCccc--ccceeeEcCCCcccCCCCCCCcccccccccC
Q 013733 5 KPQYEKVARLFNGPNAAHPGIILMTRVDCAL---KINTNLCDKFSVG--HYPMLLWGSPSKFVAGSWEPNQEKKEIRALE 79 (437)
Q Consensus 5 aP~fekaA~~l~~~~~~~~~~V~~akVDCa~---e~N~~lC~~f~V~--gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~ 79 (437)
+|+|+++|..+.... ..|.||+|||+. .+|.+||.+|+|+ +||||+||+ +|.. .....|.
T Consensus 35 ~~~~~~LA~e~~~aa----~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~-----~g~~------~~~~~Y~ 99 (116)
T cd03007 35 HEAFTRLAESSASAT----DDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFH-----GGDF------ENPVPYS 99 (116)
T ss_pred hHHHHHHHHHHHhhc----CceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEe-----CCCc------CCCccCC
Confidence 489999998886532 259999999942 1348999999999 999999985 3321 1134699
Q ss_pred CC-CCHHHHHHHHHHh
Q 013733 80 DW-QTADGLLTWINKQ 94 (437)
Q Consensus 80 g~-Rtae~Iv~~i~k~ 94 (437)
|. |++++|++||+++
T Consensus 100 G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 100 GADVTVDALQRFLKGN 115 (116)
T ss_pred CCcccHHHHHHHHHhc
Confidence 97 9999999999886
No 7
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.09 E-value=6.7e-11 Score=116.54 Aligned_cols=79 Identities=27% Similarity=0.471 Sum_probs=68.6
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
|.|+|+|+++|+.++.+.|. ++|+.|+|||..+ ..|+.+|.|..|||+++| ++|... -+.|.|+
T Consensus 29 q~L~piF~EAa~~~~~e~P~--~kvvwg~VDcd~e--~~ia~ky~I~KyPTlKvf-----rnG~~~-------~rEYRg~ 92 (375)
T KOG0912|consen 29 QMLKPIFEEAAAKFKQEFPE--GKVVWGKVDCDKE--DDIADKYHINKYPTLKVF-----RNGEMM-------KREYRGQ 92 (375)
T ss_pred HHHhHHHHHHHHHHHHhCCC--cceEEEEcccchh--hHHhhhhccccCceeeee-----eccchh-------hhhhccc
Confidence 67999999999999887632 7899999999987 899999999999999998 455532 1368999
Q ss_pred CCHHHHHHHHHHhcc
Q 013733 82 QTADGLLTWINKQTS 96 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~ 96 (437)
|++++|++||++++.
T Consensus 93 RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 93 RSVEALIEFIEKQLS 107 (375)
T ss_pred hhHHHHHHHHHHHhc
Confidence 999999999999985
No 8
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.98 E-value=5.1e-10 Score=96.95 Aligned_cols=68 Identities=12% Similarity=0.211 Sum_probs=57.0
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchh-ccCcccccceeeEcCCCcccCCCCCCCcccccccccCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLC-DKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALED 80 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC-~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g 80 (437)
|.|+|+|+++|+.+++ .+.|++|||+.+ .++| ++|+|++|||+++|. +|. .+..|.|
T Consensus 45 k~l~p~~~~la~~~~~-------~v~~~~Vd~d~~--~~l~~~~~~I~~~PTl~lf~-----~g~--------~~~~y~G 102 (113)
T cd03006 45 QAARQEFEQVAQKLSD-------QVLFVAINCWWP--QGKCRKQKHFFYFPVIHLYY-----RSR--------GPIEYKG 102 (113)
T ss_pred HHHHHHHHHHHHHhcC-------CeEEEEEECCCC--hHHHHHhcCCcccCEEEEEE-----CCc--------cceEEeC
Confidence 5789999999999875 499999999976 8899 589999999999984 332 1346889
Q ss_pred CCCHHHHHHHH
Q 013733 81 WQTADGLLTWI 91 (437)
Q Consensus 81 ~Rtae~Iv~~i 91 (437)
.+++++|+.|+
T Consensus 103 ~~~~~~i~~~~ 113 (113)
T cd03006 103 PMRAPYMEKFV 113 (113)
T ss_pred CCCHHHHHhhC
Confidence 99999999884
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.90 E-value=2.2e-09 Score=89.60 Aligned_cols=67 Identities=19% Similarity=0.391 Sum_probs=57.0
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.++|+|+++|+.+++ .+.|++|||+.+ +++|++|+|++|||+++|+.| . .+..|.|.
T Consensus 34 ~~~~p~~~~~a~~~~~-------~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~g-----~--------~~~~~~G~ 91 (101)
T cd03003 34 HDLAPTWREFAKEMDG-------VIRIGAVNCGDD--RMLCRSQGVNSYPSLYVFPSG-----M--------NPEKYYGD 91 (101)
T ss_pred HHhHHHHHHHHHHhcC-------ceEEEEEeCCcc--HHHHHHcCCCccCEEEEEcCC-----C--------CcccCCCC
Confidence 5689999999999875 599999999976 899999999999999999643 2 13457899
Q ss_pred CCHHHHHHH
Q 013733 82 QTADGLLTW 90 (437)
Q Consensus 82 Rtae~Iv~~ 90 (437)
++.++|++|
T Consensus 92 ~~~~~l~~f 100 (101)
T cd03003 92 RSKESLVKF 100 (101)
T ss_pred CCHHHHHhh
Confidence 999999887
No 10
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.89 E-value=2.6e-09 Score=90.43 Aligned_cols=75 Identities=17% Similarity=0.401 Sum_probs=59.3
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.++|.|+++|+.+++..+ ..+.+.+++|||+.+ .++|++|+|++|||+++|+.|.. ....|.|.
T Consensus 34 ~~~~p~~~~~a~~~~~~~~-~~~~~~~~~vd~d~~--~~l~~~~~v~~~Ptl~~~~~g~~------------~~~~~~g~ 98 (108)
T cd02996 34 QMLHPIFEEAAAKIKEEFP-DAGKVVWGKVDCDKE--SDIADRYRINKYPTLKLFRNGMM------------MKREYRGQ 98 (108)
T ss_pred HhhHHHHHHHHHHHhhccC-CCCcEEEEEEECCCC--HHHHHhCCCCcCCEEEEEeCCcC------------cceecCCC
Confidence 5789999999998865321 112599999999976 89999999999999999854421 12357899
Q ss_pred CCHHHHHHHH
Q 013733 82 QTADGLLTWI 91 (437)
Q Consensus 82 Rtae~Iv~~i 91 (437)
|+.++|++||
T Consensus 99 ~~~~~l~~fi 108 (108)
T cd02996 99 RSVEALAEFV 108 (108)
T ss_pred CCHHHHHhhC
Confidence 9999999985
No 11
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.80 E-value=6.6e-09 Score=91.01 Aligned_cols=71 Identities=13% Similarity=0.042 Sum_probs=56.7
Q ss_pred cchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCC
Q 013733 3 NYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQ 82 (437)
Q Consensus 3 ~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~R 82 (437)
.++|.++++|..+-.. +.|.|++|||+.+ .+||.+|+|+++|||++|. +|. .+. |.|.+
T Consensus 48 ~~~p~~~~~aa~~l~~-----~~v~~~kVD~d~~--~~La~~~~I~~iPTl~lfk-----~G~--------~v~-~~G~~ 106 (120)
T cd03065 48 QMEELVLELAAQVLED-----KGIGFGLVDSKKD--AKVAKKLGLDEEDSIYVFK-----DDE--------VIE-YDGEF 106 (120)
T ss_pred cchhhHHHHHHHHhhc-----CCCEEEEEeCCCC--HHHHHHcCCccccEEEEEE-----CCE--------EEE-eeCCC
Confidence 5677777777765221 2599999999976 9999999999999999983 443 133 88999
Q ss_pred CHHHHHHHHHHh
Q 013733 83 TADGLLTWINKQ 94 (437)
Q Consensus 83 tae~Iv~~i~k~ 94 (437)
+.+.|++||.+-
T Consensus 107 ~~~~l~~~l~~~ 118 (120)
T cd03065 107 AADTLVEFLLDL 118 (120)
T ss_pred CHHHHHHHHHHH
Confidence 999999999864
No 12
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.80 E-value=9.7e-09 Score=86.33 Aligned_cols=75 Identities=27% Similarity=0.554 Sum_probs=60.9
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+++.|+|+++|+.+.+ .+.+++|||+.+.+.++|.+|+|++|||+++|.++.-..+ .....|.|.
T Consensus 34 ~~~~~~~~~~a~~~~~-------~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~--------~~~~~~~G~ 98 (109)
T cd03002 34 KNLKPEYAKAAKELDG-------LVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKASK--------HAVEDYNGE 98 (109)
T ss_pred HhhChHHHHHHHHhcC-------CceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcccc--------cccccccCc
Confidence 5789999999998874 4899999999865689999999999999999975531100 113468899
Q ss_pred CCHHHHHHHH
Q 013733 82 QTADGLLTWI 91 (437)
Q Consensus 82 Rtae~Iv~~i 91 (437)
++.+.|++||
T Consensus 99 ~~~~~l~~fi 108 (109)
T cd03002 99 RSAKAIVDFV 108 (109)
T ss_pred cCHHHHHHHh
Confidence 9999999997
No 13
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.79 E-value=8.2e-09 Score=85.04 Aligned_cols=71 Identities=27% Similarity=0.607 Sum_probs=60.5
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|.|+++|+.+.+ .|.++.|||..+ ..+|++|+|+++||+.+|.. |. .+..|.|.
T Consensus 33 ~~~~~~~~~~~~~~~~-------~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~~-----g~--------~~~~~~g~ 90 (103)
T PF00085_consen 33 KAFKPILEKLAKEYKD-------NVKFAKVDCDEN--KELCKKYGVKSVPTIIFFKN-----GK--------EVKRYNGP 90 (103)
T ss_dssp HHHHHHHHHHHHHTTT-------TSEEEEEETTTS--HHHHHHTTCSSSSEEEEEET-----TE--------EEEEEESS
T ss_pred ccccceeccccccccc-------ccccchhhhhcc--chhhhccCCCCCCEEEEEEC-----Cc--------EEEEEECC
Confidence 4689999999999986 399999999965 99999999999999999843 32 23467899
Q ss_pred CCHHHHHHHHHHh
Q 013733 82 QTADGLLTWINKQ 94 (437)
Q Consensus 82 Rtae~Iv~~i~k~ 94 (437)
++.+.|.+||+++
T Consensus 91 ~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 91 RNAESLIEFIEKH 103 (103)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC
Confidence 9999999999875
No 14
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.75 E-value=1.1e-08 Score=85.59 Aligned_cols=69 Identities=26% Similarity=0.550 Sum_probs=57.3
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+++.|.|+++|+.+.+ .+.+++|||+.+ .++|++|+|++|||+++|++| |. .+..|.|.
T Consensus 35 ~~~~p~~~~~~~~~~~-------~~~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~~~g----~~--------~~~~~~G~ 93 (104)
T cd03004 35 QALLPELRKAARALKG-------KVKVGSVDCQKY--ESLCQQANIRAYPTIRLYPGN----AS--------KYHSYNGW 93 (104)
T ss_pred HHHHHHHHHHHHHhcC-------CcEEEEEECCch--HHHHHHcCCCcccEEEEEcCC----CC--------CceEccCC
Confidence 5789999999999854 599999999976 899999999999999999644 11 13457888
Q ss_pred CC-HHHHHHHH
Q 013733 82 QT-ADGLLTWI 91 (437)
Q Consensus 82 Rt-ae~Iv~~i 91 (437)
++ .++|.+||
T Consensus 94 ~~~~~~l~~~i 104 (104)
T cd03004 94 HRDADSILEFI 104 (104)
T ss_pred CCCHHHHHhhC
Confidence 86 99999885
No 15
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.70 E-value=2.5e-08 Score=83.03 Aligned_cols=70 Identities=19% Similarity=0.361 Sum_probs=58.1
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|.|+++|+.+++. .|.+++|||+.+ ..+|++|+|++|||+++|+.| . +..|.|.
T Consensus 32 ~~~~p~~~~l~~~~~~~------~v~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~~~g-----~---------~~~~~G~ 89 (101)
T cd02994 32 QQLQPEWEEFADWSDDL------GINVAKVDVTQE--PGLSGRFFVTALPTIYHAKDG-----V---------FRRYQGP 89 (101)
T ss_pred HHHhHHHHHHHHhhccC------CeEEEEEEccCC--HhHHHHcCCcccCEEEEeCCC-----C---------EEEecCC
Confidence 56899999999987642 499999999975 899999999999999998433 2 2357799
Q ss_pred CCHHHHHHHHHH
Q 013733 82 QTADGLLTWINK 93 (437)
Q Consensus 82 Rtae~Iv~~i~k 93 (437)
++.++|.+|+++
T Consensus 90 ~~~~~l~~~i~~ 101 (101)
T cd02994 90 RDKEDLISFIEE 101 (101)
T ss_pred CCHHHHHHHHhC
Confidence 999999999864
No 16
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.65 E-value=5.9e-08 Score=79.91 Aligned_cols=74 Identities=23% Similarity=0.486 Sum_probs=61.9
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|.|+++|+.+++.. .+.+++|||+.+ ..+|.+|+|+++||+.+|+++.. +..|.|.
T Consensus 29 ~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~--~~~~~~~~i~~~P~~~~~~~~~~-------------~~~~~g~ 88 (102)
T TIGR01126 29 KNLAPEYEKLAKELKGDP-----DIVLAKVDATAE--KDLASRFGVSGFPTIKFFPKGKK-------------PVDYEGG 88 (102)
T ss_pred HhhChHHHHHHHHhccCC-----ceEEEEEEccch--HHHHHhCCCCcCCEEEEecCCCc-------------ceeecCC
Confidence 568899999999998642 599999999976 99999999999999999864421 2357899
Q ss_pred CCHHHHHHHHHHhc
Q 013733 82 QTADGLLTWINKQT 95 (437)
Q Consensus 82 Rtae~Iv~~i~k~l 95 (437)
++.+.|..||++++
T Consensus 89 ~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 89 RDLEAIVEFVNEKS 102 (102)
T ss_pred CCHHHHHHHHHhcC
Confidence 99999999998753
No 17
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.63 E-value=5.8e-08 Score=80.48 Aligned_cols=69 Identities=20% Similarity=0.383 Sum_probs=58.0
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.|+|.|+++|+.+.+ .+.++.|||..+ .++|++|+|+++||+.+|+++.. ....|.|.
T Consensus 34 ~~~~~~~~~~~~~~~~-------~~~~~~id~~~~--~~~~~~~~i~~~P~~~~~~~~~~------------~~~~~~g~ 92 (103)
T cd03001 34 KNLAPEWKKAAKALKG-------IVKVGAVDADVH--QSLAQQYGVRGFPTIKVFGAGKN------------SPQDYQGG 92 (103)
T ss_pred HHHhHHHHHHHHHhcC-------CceEEEEECcch--HHHHHHCCCCccCEEEEECCCCc------------ceeecCCC
Confidence 5789999999998875 599999999975 89999999999999999964411 12458899
Q ss_pred CCHHHHHHHH
Q 013733 82 QTADGLLTWI 91 (437)
Q Consensus 82 Rtae~Iv~~i 91 (437)
++.+.|++|+
T Consensus 93 ~~~~~l~~~~ 102 (103)
T cd03001 93 RTAKAIVSAA 102 (103)
T ss_pred CCHHHHHHHh
Confidence 9999999997
No 18
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.62 E-value=4.8e-08 Score=80.84 Aligned_cols=71 Identities=27% Similarity=0.567 Sum_probs=58.3
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.++|+|+++|+.+++.. ..+.+++|||+.+ ..+|++|+|.++||+++|++|. .+..|.|.
T Consensus 32 ~~~~p~~~~~~~~~~~~~----~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~g~-------------~~~~~~G~ 92 (102)
T cd03005 32 KRLAPTWEQLAKKFNNEN----PSVKIAKVDCTQH--RELCSEFQVRGYPTLLLFKDGE-------------KVDKYKGT 92 (102)
T ss_pred HHhCHHHHHHHHHHhccC----CcEEEEEEECCCC--hhhHhhcCCCcCCEEEEEeCCC-------------eeeEeeCC
Confidence 568999999999998632 2599999999976 8999999999999999996442 12357899
Q ss_pred CCHHHHHHHH
Q 013733 82 QTADGLLTWI 91 (437)
Q Consensus 82 Rtae~Iv~~i 91 (437)
++.++|.+||
T Consensus 93 ~~~~~l~~~i 102 (102)
T cd03005 93 RDLDSLKEFV 102 (102)
T ss_pred CCHHHHHhhC
Confidence 9999998885
No 19
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.60 E-value=7.2e-08 Score=82.06 Aligned_cols=71 Identities=13% Similarity=0.306 Sum_probs=57.0
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhcc-CcccccceeeEcCCCcccCCCCCCCcccccccccCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK-FSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALED 80 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~-f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g 80 (437)
+.++|+|+++|+.+++. .+.+++|||+.+ +..+|.+ |+|++|||+++|+++.. .+..|.|
T Consensus 37 ~~~~~~~~~la~~~~~~------~~~~~~vd~d~~-~~~~~~~~~~v~~~Pti~~f~~~~~------------~~~~y~g 97 (109)
T cd02993 37 QAMEASYEELAEKLAGS------NVKVAKFNADGE-QREFAKEELQLKSFPTILFFPKNSR------------QPIKYPS 97 (109)
T ss_pred HHHhHHHHHHHHHhccC------CeEEEEEECCcc-chhhHHhhcCCCcCCEEEEEcCCCC------------CceeccC
Confidence 57899999999999853 499999999973 3688874 99999999999965421 1345888
Q ss_pred C-CCHHHHHHHH
Q 013733 81 W-QTADGLLTWI 91 (437)
Q Consensus 81 ~-Rtae~Iv~~i 91 (437)
. |++++|+.||
T Consensus 98 ~~~~~~~l~~f~ 109 (109)
T cd02993 98 EQRDVDSLLMFV 109 (109)
T ss_pred CCCCHHHHHhhC
Confidence 4 9999999985
No 20
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.53 E-value=8.9e-08 Score=80.69 Aligned_cols=67 Identities=16% Similarity=0.360 Sum_probs=54.9
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
|+++|+|+++|+.+.+ +.+++||++. .+.+++++|+|++|||+++|.+| . +..|.|.
T Consensus 34 ~~~~p~l~~la~~~~~--------~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~g-----~---------~~~~~G~ 90 (100)
T cd02999 34 ASFRPHFNALSSMFPQ--------IRHLAIEESS-IKPSLLSRYGVVGFPTILLFNST-----P---------RVRYNGT 90 (100)
T ss_pred HhHhHHHHHHHHHhcc--------CceEEEECCC-CCHHHHHhcCCeecCEEEEEcCC-----c---------eeEecCC
Confidence 5789999999998853 6788999883 24899999999999999998533 1 2357899
Q ss_pred CCHHHHHHHH
Q 013733 82 QTADGLLTWI 91 (437)
Q Consensus 82 Rtae~Iv~~i 91 (437)
++.++|++||
T Consensus 91 ~~~~~l~~f~ 100 (100)
T cd02999 91 RTLDSLAAFY 100 (100)
T ss_pred CCHHHHHhhC
Confidence 9999999985
No 21
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.53 E-value=1.5e-07 Score=77.85 Aligned_cols=71 Identities=20% Similarity=0.419 Sum_probs=57.9
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.|.|+|+++|+.+++.. .+.+++|||+.+ +++..++|.+|||+++|++|.. .....|.|.
T Consensus 34 ~~~~~~~~~~~~~~~~~~-----~~~~~~id~~~~---~~~~~~~~~~~Pt~~~~~~~~~-----------~~~~~~~g~ 94 (104)
T cd02995 34 KALAPIYEELAEKLKGDD-----NVVIAKMDATAN---DVPSEFVVDGFPTILFFPAGDK-----------SNPIKYEGD 94 (104)
T ss_pred HHHhhHHHHHHHHhcCCC-----CEEEEEEeCcch---hhhhhccCCCCCEEEEEcCCCc-----------CCceEccCC
Confidence 568999999999998632 599999999974 6899999999999999975521 113458899
Q ss_pred CCHHHHHHHH
Q 013733 82 QTADGLLTWI 91 (437)
Q Consensus 82 Rtae~Iv~~i 91 (437)
++.+.|++||
T Consensus 95 ~~~~~l~~fi 104 (104)
T cd02995 95 RTLEDLIKFI 104 (104)
T ss_pred cCHHHHHhhC
Confidence 9999999986
No 22
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.53 E-value=6.7e-08 Score=95.43 Aligned_cols=76 Identities=11% Similarity=0.257 Sum_probs=64.7
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
|++.|+|.+|+-.++..+ ..|++||+||+.. +.++.+|+|+|||||++| +++. ...|.|+
T Consensus 59 KkLePiWdeVG~elkdig----~PikVGKlDaT~f--~aiAnefgiqGYPTIk~~-----kgd~---------a~dYRG~ 118 (468)
T KOG4277|consen 59 KKLEPIWDEVGHELKDIG----LPIKVGKLDATRF--PAIANEFGIQGYPTIKFF-----KGDH---------AIDYRGG 118 (468)
T ss_pred ccccchhHHhCcchhhcC----Cceeecccccccc--hhhHhhhccCCCceEEEe-----cCCe---------eeecCCC
Confidence 789999999999998876 2499999999988 999999999999999997 3433 3468999
Q ss_pred CCHHHHHHHHHHhccc
Q 013733 82 QTADGLLTWINKQTSR 97 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~~ 97 (437)
|+.++|+.|..+-.++
T Consensus 119 R~Kd~iieFAhR~a~a 134 (468)
T KOG4277|consen 119 REKDAIIEFAHRCAAA 134 (468)
T ss_pred ccHHHHHHHHHhcccc
Confidence 9999999997665443
No 23
>PTZ00102 disulphide isomerase; Provisional
Probab=98.51 E-value=1.4e-07 Score=99.27 Aligned_cols=78 Identities=27% Similarity=0.559 Sum_probs=65.3
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
|+++|+|+++|+.+++.+ ..|.+++|||+.+ .++|++|+|++|||+++|.. |. .+ .|.|.
T Consensus 65 k~~~p~~~~~a~~~~~~~----~~i~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~~-----g~--------~~-~y~g~ 124 (477)
T PTZ00102 65 KRLAPEYKKAAKMLKEKK----SEIVLASVDATEE--MELAQEFGVRGYPTIKFFNK-----GN--------PV-NYSGG 124 (477)
T ss_pred HHhhHHHHHHHHHHHhcC----CcEEEEEEECCCC--HHHHHhcCCCcccEEEEEEC-----Cc--------eE-EecCC
Confidence 578999999999987643 3699999999976 89999999999999999843 22 12 68899
Q ss_pred CCHHHHHHHHHHhcccCC
Q 013733 82 QTADGLLTWINKQTSRSY 99 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~~~~ 99 (437)
|+++.|++|+.+.+++..
T Consensus 125 ~~~~~l~~~l~~~~~~~~ 142 (477)
T PTZ00102 125 RTADGIVSWIKKLTGPAV 142 (477)
T ss_pred CCHHHHHHHHHHhhCCCc
Confidence 999999999999886543
No 24
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.49 E-value=1.9e-07 Score=77.43 Aligned_cols=72 Identities=18% Similarity=0.376 Sum_probs=58.7
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|.++++++.+.... .+.+++|||+.+.+..+|++|+|++|||+.+|+.| . .+..|.|.
T Consensus 33 ~~~~~~~~~~~~~~~~~~-----~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g-----~--------~~~~~~g~ 94 (104)
T cd02997 33 KKMKPEFTKAATELKEDG-----KGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENG-----K--------FVEKYEGE 94 (104)
T ss_pred HHhCHHHHHHHHHHhhCC-----ceEEEEEECCCCccHHHHHhCCCccccEEEEEeCC-----C--------eeEEeCCC
Confidence 468899999999997532 58999999998556999999999999999998533 2 13457788
Q ss_pred CCHHHHHHHH
Q 013733 82 QTADGLLTWI 91 (437)
Q Consensus 82 Rtae~Iv~~i 91 (437)
.+.+.|++|+
T Consensus 95 ~~~~~l~~~l 104 (104)
T cd02997 95 RTAEDIIEFM 104 (104)
T ss_pred CCHHHHHhhC
Confidence 9999999885
No 25
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.48 E-value=1.7e-07 Score=80.18 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=58.3
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|+|+++++.+.+. .+.+++|||..+ ..+|.+++|++|||+.+|+.| . .+..+.|.
T Consensus 40 ~~~~p~~~~l~~~~~~~------~v~~~~vd~d~~--~~l~~~~~V~~~Pt~~i~~~g-----~--------~~~~~~G~ 98 (111)
T cd02963 40 IHIEPVWKEVIQELEPL------GVGIATVNAGHE--RRLARKLGAHSVPAIVGIING-----Q--------VTFYHDSS 98 (111)
T ss_pred HHhhHHHHHHHHHHHhc------CceEEEEecccc--HHHHHHcCCccCCEEEEEECC-----E--------EEEEecCC
Confidence 56899999999999753 489999999976 899999999999999998533 2 12345688
Q ss_pred CCHHHHHHHHHH
Q 013733 82 QTADGLLTWINK 93 (437)
Q Consensus 82 Rtae~Iv~~i~k 93 (437)
++.+.|.+||++
T Consensus 99 ~~~~~l~~~i~~ 110 (111)
T cd02963 99 FTKQHVVDFVRK 110 (111)
T ss_pred CCHHHHHHHHhc
Confidence 999999999875
No 26
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.47 E-value=3.2e-07 Score=79.14 Aligned_cols=73 Identities=27% Similarity=0.418 Sum_probs=55.9
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.|+|.|+++|+.+++.. +.|.+++|||..+.+..+|++|+|++|||+++|+++. ..|.. + ..|+|+
T Consensus 35 ~~~~~~~~~la~~~~~~~----~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~-------~-~~~~~~ 101 (114)
T cd02992 35 RAFAPTWKKLARDLRKWR----PVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFS-KEATD-------G-LKQEGP 101 (114)
T ss_pred HHHhHHHHHHHHHHHhcC----CceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCC-ccCCC-------C-CcccCC
Confidence 468999999999997542 3699999999876678999999999999999998774 23221 1 246666
Q ss_pred -CCHHHH
Q 013733 82 -QTADGL 87 (437)
Q Consensus 82 -Rtae~I 87 (437)
|..+++
T Consensus 102 ~~~~~~~ 108 (114)
T cd02992 102 ERDVNEL 108 (114)
T ss_pred ccCHHHH
Confidence 666555
No 27
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.45 E-value=3.9e-07 Score=75.37 Aligned_cols=72 Identities=25% Similarity=0.494 Sum_probs=58.5
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|.|+++|+.++... .+.+++|||..+ +..+|++|+|+++||+.+|.++. . ....|.|.
T Consensus 34 ~~~~~~~~~~~~~~~~~~-----~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~~~~~~----~--------~~~~~~g~ 95 (105)
T cd02998 34 KNLAPEYEKLAAVFANED-----DVVIAKVDADEA-NKDLAKKYGVSGFPTLKFFPKGS----T--------EPVKYEGG 95 (105)
T ss_pred HhhChHHHHHHHHhCCCC-----CEEEEEEECCCc-chhhHHhCCCCCcCEEEEEeCCC----C--------CccccCCc
Confidence 568999999999987432 599999999982 38999999999999999996442 1 12357899
Q ss_pred CCHHHHHHHH
Q 013733 82 QTADGLLTWI 91 (437)
Q Consensus 82 Rtae~Iv~~i 91 (437)
++.+.|.+||
T Consensus 96 ~~~~~l~~~i 105 (105)
T cd02998 96 RDLEDLVKFV 105 (105)
T ss_pred cCHHHHHhhC
Confidence 9999999885
No 28
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.44 E-value=2.6e-07 Score=89.29 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=60.8
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
|+++|+|+++|+.+++ .+.+++|||+.+ .++|++|+|++|||+++|+. |. .+..+.|.
T Consensus 68 k~~~P~~e~la~~~~~-------~v~~~~VD~~~~--~~l~~~~~I~~~PTl~~f~~-----G~--------~v~~~~G~ 125 (224)
T PTZ00443 68 RKMAPAWERLAKALKG-------QVNVADLDATRA--LNLAKRFAIKGYPTLLLFDK-----GK--------MYQYEGGD 125 (224)
T ss_pred HHHHHHHHHHHHHcCC-------CeEEEEecCccc--HHHHHHcCCCcCCEEEEEEC-----CE--------EEEeeCCC
Confidence 5689999999999875 599999999976 89999999999999999853 32 12234577
Q ss_pred CCHHHHHHHHHHhcc
Q 013733 82 QTADGLLTWINKQTS 96 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~ 96 (437)
++.++|.+|+.+...
T Consensus 126 ~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 126 RSTEKLAAFALGDFK 140 (224)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998875
No 29
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.5e-07 Score=96.80 Aligned_cols=75 Identities=16% Similarity=0.331 Sum_probs=62.1
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
|+|+|+|+++|+.+++.. .|+||++|.+.|+ + ....|++||||+|||.|.. +.+..|.|.
T Consensus 400 k~laP~~eeLAe~~~~~~-----~vviAKmDaTaNd---~-~~~~~~~fPTI~~~pag~k-----------~~pv~y~g~ 459 (493)
T KOG0190|consen 400 KALAPIYEELAEKYKDDE-----NVVIAKMDATAND---V-PSLKVDGFPTILFFPAGHK-----------SNPVIYNGD 459 (493)
T ss_pred hhhhhHHHHHHHHhcCCC-----CcEEEEecccccc---C-ccccccccceEEEecCCCC-----------CCCcccCCC
Confidence 689999999999999843 7999999999873 2 3568888999999986521 335679999
Q ss_pred CCHHHHHHHHHHhcc
Q 013733 82 QTADGLLTWINKQTS 96 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~ 96 (437)
|+.+++..|+.+...
T Consensus 460 R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 460 RTLEDLKKFIKKSAT 474 (493)
T ss_pred cchHHHHhhhccCCC
Confidence 999999999987754
No 30
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.40 E-value=4.2e-07 Score=74.78 Aligned_cols=69 Identities=19% Similarity=0.456 Sum_probs=57.0
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.++|.++++++.+.+ .+.+++|||+.+ ..+|++|+|+++||+.+|. +|. .+..+.|.
T Consensus 28 ~~~~~~~~~~~~~~~~-------~~~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~-----~g~--------~~~~~~g~ 85 (96)
T cd02956 28 KELLPLLERLAEEYQG-------QFVLAKVNCDAQ--PQIAQQFGVQALPTVYLFA-----AGQ--------PVDGFQGA 85 (96)
T ss_pred HHHHHHHHHHHHHhCC-------cEEEEEEeccCC--HHHHHHcCCCCCCEEEEEe-----CCE--------EeeeecCC
Confidence 5689999999998865 489999999976 9999999999999999984 232 12346788
Q ss_pred CCHHHHHHHHH
Q 013733 82 QTADGLLTWIN 92 (437)
Q Consensus 82 Rtae~Iv~~i~ 92 (437)
++.+.|.+|++
T Consensus 86 ~~~~~l~~~l~ 96 (96)
T cd02956 86 QPEEQLRQMLD 96 (96)
T ss_pred CCHHHHHHHhC
Confidence 99999998873
No 31
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.38 E-value=5.1e-07 Score=94.00 Aligned_cols=80 Identities=24% Similarity=0.398 Sum_probs=65.7
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
++++|+|+++|+.+++.+ ..|.+++|||+.+ .++|++|+|++|||+++|+.| .. .+..|.|.
T Consensus 34 ~~~~~~~~~~a~~~~~~~----~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~~g-----~~-------~~~~~~g~ 95 (462)
T TIGR01130 34 KSLAPEYEKAADELKKKG----PPIKLAKVDATEE--KDLAQKYGVSGYPTLKIFRNG-----ED-------SVSDYNGP 95 (462)
T ss_pred HhhhHHHHHHHHHHhhcC----CceEEEEEECCCc--HHHHHhCCCccccEEEEEeCC-----cc-------ceeEecCC
Confidence 578999999999997643 2599999999976 899999999999999998533 21 02457899
Q ss_pred CCHHHHHHHHHHhcccCC
Q 013733 82 QTADGLLTWINKQTSRSY 99 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~~~~ 99 (437)
++.+.|.+|+.+.+++..
T Consensus 96 ~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 96 RDADGIVKYMKKQSGPAV 113 (462)
T ss_pred CCHHHHHHHHHHhcCCCc
Confidence 999999999999886443
No 32
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.35 E-value=9.7e-07 Score=74.20 Aligned_cols=73 Identities=14% Similarity=0.302 Sum_probs=59.0
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|+|+++|+.+++.+ ..+.+++|||..+ ..+|++|+|.++||+++|. +|. +..|.|.
T Consensus 31 ~~~~p~l~~l~~~~~~~~----~~~~~~~vd~~~~--~~~~~~~~I~~~Pt~~l~~-----~~~---------~~~~~G~ 90 (104)
T cd03000 31 KKLEPVWNEVGAELKSSG----SPVRVGKLDATAY--SSIASEFGVRGYPTIKLLK-----GDL---------AYNYRGP 90 (104)
T ss_pred HhhChHHHHHHHHHHhcC----CcEEEEEEECccC--HhHHhhcCCccccEEEEEc-----CCC---------ceeecCC
Confidence 568999999999996532 2599999999976 8999999999999999983 221 1246788
Q ss_pred CCHHHHHHHHHHh
Q 013733 82 QTADGLLTWINKQ 94 (437)
Q Consensus 82 Rtae~Iv~~i~k~ 94 (437)
++.+.|.+|+++.
T Consensus 91 ~~~~~l~~~~~~~ 103 (104)
T cd03000 91 RTKDDIVEFANRV 103 (104)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999763
No 33
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.35 E-value=8.4e-07 Score=71.83 Aligned_cols=71 Identities=28% Similarity=0.589 Sum_probs=57.5
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|.|+++|+.++.. +.+.++.|||..+ ..+|++|+|+++||+++|+++. . .+..|.|.
T Consensus 31 ~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~--~~~~~~~~i~~~Pt~~~~~~~~----~--------~~~~~~g~ 91 (101)
T cd02961 31 KALAPEYEKLAKELKGD-----GKVVVAKVDCTAN--NDLCSEYGVRGYPTIKLFPNGS----K--------EPVKYEGP 91 (101)
T ss_pred HhhhHHHHHHHHHhccC-----CceEEEEeeccch--HHHHHhCCCCCCCEEEEEcCCC----c--------ccccCCCC
Confidence 46789999999998622 2599999999975 8999999999999999996542 1 13457788
Q ss_pred CCHHHHHHHH
Q 013733 82 QTADGLLTWI 91 (437)
Q Consensus 82 Rtae~Iv~~i 91 (437)
++.+.|.+|+
T Consensus 92 ~~~~~i~~~~ 101 (101)
T cd02961 92 RTLESLVEFI 101 (101)
T ss_pred cCHHHHHhhC
Confidence 9999998885
No 34
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=7.6e-07 Score=92.15 Aligned_cols=78 Identities=23% Similarity=0.434 Sum_probs=66.4
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|+|+++|+.+++ .+.+|.|||+.+ ..+|.+|+|++|||+++|.++ . .+..|.|.
T Consensus 63 ~~l~~~~~~~~~~l~~-------~~~~~~vd~~~~--~~~~~~y~i~gfPtl~~f~~~-~------------~~~~~~~~ 120 (383)
T KOG0191|consen 63 KKLAPTYKKLAKALKG-------KVKIGAVDCDEH--KDLCEKYGIQGFPTLKVFRPG-K------------KPIDYSGP 120 (383)
T ss_pred hhhchHHHHHHHHhcC-------ceEEEEeCchhh--HHHHHhcCCccCcEEEEEcCC-C------------ceeeccCc
Confidence 5789999999999987 599999999987 999999999999999999655 1 12457889
Q ss_pred CCHHHHHHHHHHhcccCCCC
Q 013733 82 QTADGLLTWINKQTSRSYGL 101 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~~~~~l 101 (437)
++++.+..|+.+.+......
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~ 140 (383)
T KOG0191|consen 121 RNAESLAEFLIKELEPSVKK 140 (383)
T ss_pred ccHHHHHHHHHHhhcccccc
Confidence 99999999998887655443
No 35
>PLN02309 5'-adenylylsulfate reductase
Probab=98.33 E-value=7.6e-07 Score=94.20 Aligned_cols=73 Identities=15% Similarity=0.329 Sum_probs=58.9
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhc-cCcccccceeeEcCCCcccCCCCCCCcccccccccC-
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD-KFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALE- 79 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~-~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~- 79 (437)
|.|.|.|+++|+.+++. .|.|++|||+.+ +.++|. +|+|++||||++|+++.. ....|.
T Consensus 381 q~m~p~~e~LA~~~~~~------~V~f~kVD~d~~-~~~la~~~~~I~~~PTil~f~~g~~------------~~v~Y~~ 441 (457)
T PLN02309 381 QAMEASYEELAEKLAGS------GVKVAKFRADGD-QKEFAKQELQLGSFPTILLFPKNSS------------RPIKYPS 441 (457)
T ss_pred HHHHHHHHHHHHHhccC------CeEEEEEECCCc-chHHHHhhCCCceeeEEEEEeCCCC------------CeeecCC
Confidence 57899999999999764 399999999932 378897 599999999999965421 123576
Q ss_pred CCCCHHHHHHHHHH
Q 013733 80 DWQTADGLLTWINK 93 (437)
Q Consensus 80 g~Rtae~Iv~~i~k 93 (437)
+.|++++|+.||++
T Consensus 442 ~~R~~~~L~~fv~~ 455 (457)
T PLN02309 442 EKRDVDSLLSFVNS 455 (457)
T ss_pred CCcCHHHHHHHHHH
Confidence 47999999999976
No 36
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.26 E-value=1.3e-06 Score=92.62 Aligned_cols=74 Identities=14% Similarity=0.248 Sum_probs=57.8
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccC-C
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALE-D 80 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~-g 80 (437)
|.|+|.|+++|+.+++. .+.|++|||+.+.+...+.+|+|++|||+++|+.+ .. ....|. |
T Consensus 387 k~m~P~~eelA~~~~~~------~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g-----~~-------~~~~Y~~g 448 (463)
T TIGR00424 387 QAMEASYLELAEKLAGS------GVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKH-----SS-------RPIKYPSE 448 (463)
T ss_pred HHHHHHHHHHHHHhccC------CcEEEEEECCCCccHHHHHHcCCCccceEEEEECC-----CC-------CceeCCCC
Confidence 57899999999999763 38999999997633334578999999999999644 21 123586 5
Q ss_pred CCCHHHHHHHHHH
Q 013733 81 WQTADGLLTWINK 93 (437)
Q Consensus 81 ~Rtae~Iv~~i~k 93 (437)
.|++++|+.||+.
T Consensus 449 ~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 449 KRDVDSLMSFVNL 461 (463)
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999974
No 37
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.21 E-value=2.9e-06 Score=69.35 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=58.1
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|.|+++++.+++ .+.+++|||..+ ..++++|+|.++||+.+|+.| . .+..+.|.
T Consensus 30 ~~~~~~l~~~~~~~~~-------~~~~~~vd~~~~--~~~~~~~~v~~~P~~~~~~~g-----~--------~~~~~~g~ 87 (101)
T TIGR01068 30 KMIAPILEELAKEYEG-------KVKFVKLNVDEN--PDIAAKYGIRSIPTLLLFKNG-----K--------EVDRSVGA 87 (101)
T ss_pred HHhCHHHHHHHHHhcC-------CeEEEEEECCCC--HHHHHHcCCCcCCEEEEEeCC-----c--------EeeeecCC
Confidence 4678999999988764 499999999976 899999999999999998532 2 12345678
Q ss_pred CCHHHHHHHHHHhc
Q 013733 82 QTADGLLTWINKQT 95 (437)
Q Consensus 82 Rtae~Iv~~i~k~l 95 (437)
.+.+.|.+|+++.+
T Consensus 88 ~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 88 LPKAALKQLINKNL 101 (101)
T ss_pred CCHHHHHHHHHhhC
Confidence 89999999998753
No 38
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.9e-06 Score=89.23 Aligned_cols=79 Identities=20% Similarity=0.467 Sum_probs=66.3
Q ss_pred CCcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCC
Q 013733 1 MRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALED 80 (437)
Q Consensus 1 ~k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g 80 (437)
+|+++|+|+++|..++.. +.|.++++||+.+ ..+|.+++|++|||+++|+++.. .+..|.+
T Consensus 177 ck~l~~~~~~~a~~~~~~-----~~v~~~~~d~~~~--~~~~~~~~v~~~Pt~~~f~~~~~------------~~~~~~~ 237 (383)
T KOG0191|consen 177 CKKLAPEWEKLAKLLKSK-----ENVELGKIDATVH--KSLASRLEVRGYPTLKLFPPGEE------------DIYYYSG 237 (383)
T ss_pred hhhcChHHHHHHHHhccC-----cceEEEeeccchH--HHHhhhhcccCCceEEEecCCCc------------ccccccc
Confidence 478899999999999852 2699999999965 89999999999999999976532 1235678
Q ss_pred CCCHHHHHHHHHHhcccC
Q 013733 81 WQTADGLLTWINKQTSRS 98 (437)
Q Consensus 81 ~Rtae~Iv~~i~k~l~~~ 98 (437)
.|+.+.|+.|+.+.....
T Consensus 238 ~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 238 LRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cccHHHHHHHHHhhcCCC
Confidence 999999999999887654
No 39
>PRK09381 trxA thioredoxin; Provisional
Probab=98.18 E-value=3.2e-06 Score=71.36 Aligned_cols=72 Identities=11% Similarity=0.221 Sum_probs=58.8
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|.|+++|+.+.+ .+.+++|||+.+ ..++++|+|+++||+.+|+.|.. +..+.|.
T Consensus 37 ~~~~p~~~~l~~~~~~-------~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~G~~-------------~~~~~G~ 94 (109)
T PRK09381 37 KMIAPILDEIADEYQG-------KLTVAKLNIDQN--PGTAPKYGIRGIPTLLLFKNGEV-------------AATKVGA 94 (109)
T ss_pred HHHhHHHHHHHHHhCC-------CcEEEEEECCCC--hhHHHhCCCCcCCEEEEEeCCeE-------------EEEecCC
Confidence 4688999999998865 489999999976 89999999999999999853321 2235677
Q ss_pred CCHHHHHHHHHHhc
Q 013733 82 QTADGLLTWINKQT 95 (437)
Q Consensus 82 Rtae~Iv~~i~k~l 95 (437)
.+.+.|..||.+.+
T Consensus 95 ~~~~~l~~~i~~~~ 108 (109)
T PRK09381 95 LSKGQLKEFLDANL 108 (109)
T ss_pred CCHHHHHHHHHHhc
Confidence 88999999998765
No 40
>PRK10996 thioredoxin 2; Provisional
Probab=98.11 E-value=4.9e-06 Score=74.28 Aligned_cols=71 Identities=21% Similarity=0.422 Sum_probs=58.3
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.++|.|+++++.+.+ .+.+++||+..+ .+++++|+|+++||+.+|. +|. .+..+.|.
T Consensus 68 ~~~~~~l~~l~~~~~~-------~v~~~~vd~~~~--~~l~~~~~V~~~Ptlii~~-----~G~--------~v~~~~G~ 125 (139)
T PRK10996 68 RNFAPIFEDVAAERSG-------KVRFVKVNTEAE--RELSARFRIRSIPTIMIFK-----NGQ--------VVDMLNGA 125 (139)
T ss_pred HHHHHHHHHHHHHhCC-------CeEEEEEeCCCC--HHHHHhcCCCccCEEEEEE-----CCE--------EEEEEcCC
Confidence 4678999999998764 499999999865 8999999999999999984 332 13456788
Q ss_pred CCHHHHHHHHHHh
Q 013733 82 QTADGLLTWINKQ 94 (437)
Q Consensus 82 Rtae~Iv~~i~k~ 94 (437)
.+.+.|.+|+++.
T Consensus 126 ~~~e~l~~~l~~~ 138 (139)
T PRK10996 126 VPKAPFDSWLNEA 138 (139)
T ss_pred CCHHHHHHHHHHh
Confidence 8999999999875
No 41
>PTZ00102 disulphide isomerase; Provisional
Probab=98.05 E-value=7.9e-06 Score=86.07 Aligned_cols=76 Identities=17% Similarity=0.409 Sum_probs=63.1
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
|.++|.|+++|+.+.+.. .+.+++|||+.+ ..+|.+++|++|||+++|++|.. ....|.|.
T Consensus 391 ~~~~p~~~~~a~~~~~~~-----~v~~~~id~~~~--~~~~~~~~v~~~Pt~~~~~~~~~------------~~~~~~G~ 451 (477)
T PTZ00102 391 KNLEPVYNELGEKYKDND-----SIIVAKMNGTAN--ETPLEEFSWSAFPTILFVKAGER------------TPIPYEGE 451 (477)
T ss_pred HHHHHHHHHHHHHhccCC-----cEEEEEEECCCC--ccchhcCCCcccCeEEEEECCCc------------ceeEecCc
Confidence 578999999999987642 699999999976 78999999999999999964421 01357899
Q ss_pred CCHHHHHHHHHHhcc
Q 013733 82 QTADGLLTWINKQTS 96 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~ 96 (437)
++.++|.+||++...
T Consensus 452 ~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 452 RTVEGFKEFVNKHAT 466 (477)
T ss_pred CCHHHHHHHHHHcCC
Confidence 999999999999875
No 42
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.98 E-value=1.3e-05 Score=71.39 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=56.9
Q ss_pred hHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHH
Q 013733 6 PQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTAD 85 (437)
Q Consensus 6 P~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae 85 (437)
=+.+++|+.|.+. ++++++||.+.+ ++++.+|+|++.||+.+|. +|. .+..+.|.++.+
T Consensus 56 vvleELa~e~~~~------~v~~akVDiD~~--~~LA~~fgV~siPTLl~Fk-----dGk--------~v~~i~G~~~k~ 114 (132)
T PRK11509 56 VMIGELLREFPDY------TWQVAIADLEQS--EAIGDRFGVFRFPATLVFT-----GGN--------YRGVLNGIHPWA 114 (132)
T ss_pred HHHHHHHHHhcCC------ceEEEEEECCCC--HHHHHHcCCccCCEEEEEE-----CCE--------EEEEEeCcCCHH
Confidence 3568888888642 599999999976 9999999999999999984 442 233456889999
Q ss_pred HHHHHHHHhcc
Q 013733 86 GLLTWINKQTS 96 (437)
Q Consensus 86 ~Iv~~i~k~l~ 96 (437)
.+.+||++.+.
T Consensus 115 ~l~~~I~~~L~ 125 (132)
T PRK11509 115 ELINLMRGLVE 125 (132)
T ss_pred HHHHHHHHHhc
Confidence 99999998875
No 43
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.96 E-value=9.6e-06 Score=70.19 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=42.6
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGS 57 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~ 57 (437)
+.++|.++++|+.+.+ .+.+++||++.+ ++++.+|+|++.||+.+|.
T Consensus 45 ~~i~P~leela~e~~~-------~v~f~kVdid~~--~~la~~f~V~sIPTli~fk 91 (111)
T cd02965 45 LDVAVVLPELLKAFPG-------RFRAAVVGRADE--QALAARFGVLRTPALLFFR 91 (111)
T ss_pred hhhHhHHHHHHHHCCC-------cEEEEEEECCCC--HHHHHHcCCCcCCEEEEEE
Confidence 4689999999998875 599999999986 8999999999999999984
No 44
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.86 E-value=3.2e-05 Score=80.56 Aligned_cols=78 Identities=18% Similarity=0.359 Sum_probs=61.3
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.|+|.|+++|+.+++.+ ..|.+++|||+.+ +++. ++|++|||+++|+++... ....|.|.
T Consensus 380 ~~~~p~~~~~~~~~~~~~----~~i~~~~id~~~n---~~~~-~~i~~~Pt~~~~~~~~~~-----------~~~~~~g~ 440 (462)
T TIGR01130 380 KNLAPIYEELAEKYKDAE----SDVVIAKMDATAN---DVPP-FEVEGFPTIKFVPAGKKS-----------EPVPYDGD 440 (462)
T ss_pred HHHHHHHHHHHHHhhcCC----CcEEEEEEECCCC---ccCC-CCccccCEEEEEeCCCCc-----------CceEecCc
Confidence 568999999999998732 2599999999975 4555 999999999999755321 12357799
Q ss_pred CCHHHHHHHHHHhcccC
Q 013733 82 QTADGLLTWINKQTSRS 98 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~~~ 98 (437)
++.+.|++||.+.....
T Consensus 441 ~~~~~l~~~l~~~~~~~ 457 (462)
T TIGR01130 441 RTLEDFSKFIAKHATFP 457 (462)
T ss_pred CCHHHHHHHHHhcCCCC
Confidence 99999999999887543
No 45
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=3.2e-05 Score=77.01 Aligned_cols=74 Identities=20% Similarity=0.415 Sum_probs=63.4
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.|.|.-|+++..++| .+++++|||+.+ +.+..+|||++.||+++|. .|. | +..|.|.
T Consensus 59 ~qL~p~Lekla~~~~G-------~f~LakvN~D~~--p~vAaqfgiqsIPtV~af~-----dGq--p------VdgF~G~ 116 (304)
T COG3118 59 KQLTPTLEKLAAEYKG-------KFKLAKVNCDAE--PMVAAQFGVQSIPTVYAFK-----DGQ--P------VDGFQGA 116 (304)
T ss_pred HHHHHHHHHHHHHhCC-------ceEEEEecCCcc--hhHHHHhCcCcCCeEEEee-----CCc--C------ccccCCC
Confidence 4688999999999987 699999999987 9999999999999999984 332 1 3346788
Q ss_pred CCHHHHHHHHHHhccc
Q 013733 82 QTADGLLTWINKQTSR 97 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~~ 97 (437)
...+.|.+|+++.++.
T Consensus 117 qPesqlr~~ld~~~~~ 132 (304)
T COG3118 117 QPESQLRQFLDKVLPA 132 (304)
T ss_pred CcHHHHHHHHHHhcCh
Confidence 8889999999999876
No 46
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=5.6e-05 Score=68.43 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=61.3
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
|.|.|+.++++..+++ .+++++||-+.+ .++..+|+|...||+.+| .+|.. +..+.|.
T Consensus 77 k~l~P~l~~~~~~~~g-------~~k~~kvdtD~~--~ela~~Y~I~avPtvlvf-----knGe~--------~d~~vG~ 134 (150)
T KOG0910|consen 77 KMLGPILEELVSEYAG-------KFKLYKVDTDEH--PELAEDYEISAVPTVLVF-----KNGEK--------VDRFVGA 134 (150)
T ss_pred hHhhHHHHHHHHhhcC-------eEEEEEEccccc--cchHhhcceeeeeEEEEE-----ECCEE--------eeeeccc
Confidence 5689999999999875 699999998866 999999999999999997 45542 2345688
Q ss_pred CCHHHHHHHHHHhcc
Q 013733 82 QTADGLLTWINKQTS 96 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~ 96 (437)
-+.+.|.+||++.++
T Consensus 135 ~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 135 VPKEQLRSLIKKFLK 149 (150)
T ss_pred CCHHHHHHHHHHHhc
Confidence 899999999998764
No 47
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.69 E-value=6.8e-05 Score=63.02 Aligned_cols=69 Identities=10% Similarity=0.197 Sum_probs=52.6
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
|.++|.|+++++.+++. .+.+++||++ + .+++++|+|+++||+.+|. +|. .+....|
T Consensus 33 k~~~p~l~~~~~~~~~~------~~~~~~vd~d-~--~~~~~~~~v~~~Pt~~~~~-----~g~--------~~~~~~G- 89 (102)
T cd02948 33 KAVVSLFKKIKNELGDD------LLHFATAEAD-T--IDTLKRYRGKCEPTFLFYK-----NGE--------LVAVIRG- 89 (102)
T ss_pred HHHhHHHHHHHHHcCCC------cEEEEEEeCC-C--HHHHHHcCCCcCcEEEEEE-----CCE--------EEEEEec-
Confidence 56889999999988742 4889999988 3 6899999999999999984 332 1222335
Q ss_pred CCHHHHHHHHHH
Q 013733 82 QTADGLLTWINK 93 (437)
Q Consensus 82 Rtae~Iv~~i~k 93 (437)
.+.+.|.++|++
T Consensus 90 ~~~~~~~~~i~~ 101 (102)
T cd02948 90 ANAPLLNKTITE 101 (102)
T ss_pred CChHHHHHHHhh
Confidence 477888888764
No 48
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.65 E-value=7.5e-05 Score=61.89 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=56.3
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCccc--ccceeeEcCCCcccCCCCCCCcccccccccC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG--HYPMLLWGSPSKFVAGSWEPNQEKKEIRALE 79 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~--gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~ 79 (437)
+.++|.++++|+.+++ .|.|+.||+..+ ..++..|+|. ++||+.++..+ +|.. .....
T Consensus 28 ~~~~~~~~~vA~~~~~-------~v~f~~vd~~~~--~~~~~~~~i~~~~~P~~~~~~~~---~~~k--------~~~~~ 87 (103)
T cd02982 28 EELRERFKEVAKKFKG-------KLLFVVVDADDF--GRHLEYFGLKEEDLPVIAIINLS---DGKK--------YLMPE 87 (103)
T ss_pred HHHHHHHHHHHHHhCC-------eEEEEEEchHhh--HHHHHHcCCChhhCCEEEEEecc---cccc--------cCCCc
Confidence 4578999999999985 599999999975 8999999999 99999998542 1211 11122
Q ss_pred CCCCHHHHHHHHHHh
Q 013733 80 DWQTADGLLTWINKQ 94 (437)
Q Consensus 80 g~Rtae~Iv~~i~k~ 94 (437)
+..+.+.|.+|+.+.
T Consensus 88 ~~~~~~~l~~fi~~~ 102 (103)
T cd02982 88 EELTAESLEEFVEDF 102 (103)
T ss_pred cccCHHHHHHHHHhh
Confidence 345899999999764
No 49
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.58 E-value=0.00011 Score=61.40 Aligned_cols=72 Identities=22% Similarity=0.235 Sum_probs=54.0
Q ss_pred CcchhHH---HHHHHHhCCCCCCCCcceEEEEEeccccc--CcchhccCcccccceeeEcCCCcccCCCCCCCccccccc
Q 013733 2 RNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIR 76 (437)
Q Consensus 2 k~faP~f---ekaA~~l~~~~~~~~~~V~~akVDCa~e~--N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~ 76 (437)
+.|.|.+ +++++.+++ .+.+++||+..+. +..++++|+|+++||+.+|.++ +|. .+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~-------~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~---~g~--------~~~ 88 (104)
T cd02953 27 KVNEKVVFSDPEVQAALKK-------DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPG---GEP--------EPL 88 (104)
T ss_pred HHHHHHhcCCHHHHHHHhC-------CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCC---CCC--------CCc
Confidence 4567777 678888864 3999999998632 3789999999999999999531 222 123
Q ss_pred ccCCCCCHHHHHHHH
Q 013733 77 ALEDWQTADGLLTWI 91 (437)
Q Consensus 77 ~y~g~Rtae~Iv~~i 91 (437)
.+.|..+.+.|.+++
T Consensus 89 ~~~G~~~~~~l~~~l 103 (104)
T cd02953 89 RLPGFLTADEFLEAL 103 (104)
T ss_pred ccccccCHHHHHHHh
Confidence 466889999998876
No 50
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.57 E-value=6.4e-05 Score=65.42 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=43.3
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 59 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~ 59 (437)
|.|+|.++++|..+.+ .+.|++||.+.+ ++++.+|+|++.||+.+|..|
T Consensus 30 k~m~P~le~la~~~~~-------~v~f~kVDvD~~--~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 30 MQMDEVLAKIAEDVSN-------FAVIYLVDIDEV--PDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHHHHHHccC-------ceEEEEEECCCC--HHHHHHcCCCCCCEEEEEECC
Confidence 5789999999998864 589999998865 999999999999999998654
No 51
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.57 E-value=9.8e-05 Score=61.23 Aligned_cols=69 Identities=14% Similarity=0.269 Sum_probs=54.9
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|.++++++.+++ .+.+++||++.+ .+++.+++|.++||+.+|. +|. .+..+.|.
T Consensus 29 ~~~~~~l~~l~~~~~~-------~v~~~~id~d~~--~~l~~~~~v~~vPt~~i~~-----~g~--------~v~~~~g~ 86 (97)
T cd02949 29 RTLKPILNKVIDEFDG-------AVHFVEIDIDED--QEIAEAAGIMGTPTVQFFK-----DKE--------LVKEISGV 86 (97)
T ss_pred HHHHHHHHHHHHHhCC-------ceEEEEEECCCC--HHHHHHCCCeeccEEEEEE-----CCe--------EEEEEeCC
Confidence 4578899999988864 489999999865 8999999999999999984 222 13456688
Q ss_pred CCHHHHHHHHH
Q 013733 82 QTADGLLTWIN 92 (437)
Q Consensus 82 Rtae~Iv~~i~ 92 (437)
++.+.|.+|++
T Consensus 87 ~~~~~~~~~l~ 97 (97)
T cd02949 87 KMKSEYREFIE 97 (97)
T ss_pred ccHHHHHHhhC
Confidence 88888888863
No 52
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.56 E-value=6.4e-05 Score=68.57 Aligned_cols=50 Identities=18% Similarity=0.380 Sum_probs=43.7
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccc------cceeeEcCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH------YPMLLWGSPS 59 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~g------YPTLklf~p~ 59 (437)
+.++|.|+++|+.+++. .+.+++|||+.+ +++|.+|+|++ +||+.+|..|
T Consensus 63 k~l~p~l~~la~~~~~~------~v~f~~VDvd~~--~~la~~~~V~~~~~v~~~PT~ilf~~G 118 (152)
T cd02962 63 VNFAPVFAELSLKYNNN------NLKFGKIDIGRF--PNVAEKFRVSTSPLSKQLPTIILFQGG 118 (152)
T ss_pred HHHHHHHHHHHHHcccC------CeEEEEEECCCC--HHHHHHcCceecCCcCCCCEEEEEECC
Confidence 57899999999998753 499999999976 89999999998 9999999544
No 53
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.55 E-value=0.0003 Score=63.10 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=56.6
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|.++++++.+.+ .+.|..||.+.+.+.+++++|+|+++||+++|.+ +|. .+..+.|.
T Consensus 36 ~~~~p~l~~l~~~~~~-------~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~----~G~--------~v~~~~G~ 96 (142)
T cd02950 36 QEMAPDVAKLKQKYGD-------QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR----EGN--------EEGQSIGL 96 (142)
T ss_pred HHhHHHHHHHHHHhcc-------CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC----CCC--------EEEEEeCC
Confidence 4689999999998865 3556666655443468999999999999999832 232 12345688
Q ss_pred CCHHHHHHHHHHhcc
Q 013733 82 QTADGLLTWINKQTS 96 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~ 96 (437)
.+.+.|.++|.+.+.
T Consensus 97 ~~~~~l~~~l~~l~~ 111 (142)
T cd02950 97 QPKQVLAQNLDALVA 111 (142)
T ss_pred CCHHHHHHHHHHHHc
Confidence 888999999988775
No 54
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.54 E-value=0.00014 Score=57.39 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=52.4
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|.++++++. .+ .+.++.|||..+ .+++.+|+|.++||+.+|..|. .+..+.|.
T Consensus 26 ~~~~~~~~~~~~~-~~-------~~~~~~i~~~~~--~~~~~~~~v~~~P~~~~~~~g~-------------~~~~~~g~ 82 (93)
T cd02947 26 KAIAPVLEELAEE-YP-------KVKFVKVDVDEN--PELAEEYGVRSIPTFLFFKNGK-------------EVDRVVGA 82 (93)
T ss_pred HHhhHHHHHHHHH-CC-------CceEEEEECCCC--hhHHHhcCcccccEEEEEECCE-------------EEEEEecC
Confidence 3577889999887 22 599999999975 8999999999999999985331 13345677
Q ss_pred CCHHHHHHHH
Q 013733 82 QTADGLLTWI 91 (437)
Q Consensus 82 Rtae~Iv~~i 91 (437)
.+.+.|.+||
T Consensus 83 ~~~~~l~~~i 92 (93)
T cd02947 83 DPKEELEEFL 92 (93)
T ss_pred CCHHHHHHHh
Confidence 7888888886
No 55
>PHA02278 thioredoxin-like protein
Probab=97.48 E-value=0.00014 Score=61.92 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=51.5
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEeccccc--CcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALE 79 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~--N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~ 79 (437)
|.++|.++++|+.+.. .+.+.+||.+.+. +.+++++|+|.+.||+.+|. +|. .+..+.
T Consensus 30 k~m~p~l~~l~~~~~~-------~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk-----~G~--------~v~~~~ 89 (103)
T PHA02278 30 EILKSVIPMFQESGDI-------KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK-----DGQ--------LVKKYE 89 (103)
T ss_pred HhHHHHHHHHHhhhcC-------CceEEEEECCccccccHHHHHHCCCccccEEEEEE-----CCE--------EEEEEe
Confidence 5789999999987543 3678999988642 26899999999999999984 332 133455
Q ss_pred CCCCHHHHHHH
Q 013733 80 DWQTADGLLTW 90 (437)
Q Consensus 80 g~Rtae~Iv~~ 90 (437)
|..+.+.|.+|
T Consensus 90 G~~~~~~l~~~ 100 (103)
T PHA02278 90 DQVTPMQLQEL 100 (103)
T ss_pred CCCCHHHHHhh
Confidence 77777777665
No 56
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.44 E-value=0.00028 Score=55.93 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=53.2
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|.++++|+.++. .+.+.+||+..+ .+++++|+|+++||+.+ +|. ..+.|.
T Consensus 15 ~~~~~~l~~l~~~~~~-------~~~~~~vd~~~~--~~~~~~~~v~~vPt~~~-------~g~----------~~~~G~ 68 (82)
T TIGR00411 15 PAAKRVVEEVAKEMGD-------AVEVEYINVMEN--PQKAMEYGIMAVPAIVI-------NGD----------VEFIGA 68 (82)
T ss_pred HHHHHHHHHHHHHhcC-------ceEEEEEeCccC--HHHHHHcCCccCCEEEE-------CCE----------EEEecC
Confidence 4578999999988764 488999998865 89999999999999975 221 135577
Q ss_pred CCHHHHHHHHHHh
Q 013733 82 QTADGLLTWINKQ 94 (437)
Q Consensus 82 Rtae~Iv~~i~k~ 94 (437)
.+.+.|.+++.+.
T Consensus 69 ~~~~~l~~~l~~~ 81 (82)
T TIGR00411 69 PTKEELVEAIKKR 81 (82)
T ss_pred CCHHHHHHHHHhh
Confidence 8889999988764
No 57
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.41 E-value=0.00015 Score=61.16 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=39.9
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEeccccc-CcchhccCcccccceeeEcC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYPMLLWGS 57 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~-N~~lC~~f~V~gYPTLklf~ 57 (437)
+.+.|.++++|+.+. .+.+++||++.+. ..+++++|+|+++||+++|.
T Consensus 31 ~~~~p~l~~la~~~~--------~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 31 VKIYPTMVKLSRTCN--------DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred HHHhHHHHHHHHHCC--------CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 468899999999882 3899999988641 13899999999999999984
No 58
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.34 E-value=0.00017 Score=61.77 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=40.1
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 59 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~ 59 (437)
+.+.|.++++|+.+.+ +.+++||+..+ .++.+|+|+++||+.+|..|
T Consensus 40 ~~l~~~l~~la~~~~~--------v~f~~vd~~~~---~l~~~~~i~~~Pt~~~f~~G 86 (113)
T cd02957 40 KILDSHLEELAAKYPE--------TKFVKINAEKA---FLVNYLDIKVLPTLLVYKNG 86 (113)
T ss_pred HHHHHHHHHHHHHCCC--------cEEEEEEchhh---HHHHhcCCCcCCEEEEEECC
Confidence 5689999999998742 88999998853 99999999999999998543
No 59
>PTZ00051 thioredoxin; Provisional
Probab=97.30 E-value=0.00023 Score=58.49 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=40.2
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSP 58 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p 58 (437)
+.+.|.++++|+.+. .+.++.|||+.+ ..++++|+|.++||+.+|..
T Consensus 34 ~~~~~~l~~l~~~~~--------~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 34 KRIAPFYEECSKEYT--------KMVFVKVDVDEL--SEVAEKENITSMPTFKVFKN 80 (98)
T ss_pred HHHhHHHHHHHHHcC--------CcEEEEEECcch--HHHHHHCCCceeeEEEEEeC
Confidence 468899999998654 388999999865 89999999999999999853
No 60
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.26 E-value=0.00026 Score=57.93 Aligned_cols=47 Identities=13% Similarity=0.301 Sum_probs=40.9
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGS 57 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~ 57 (437)
+.+.|.++++++.+.. .+.+++||+..+ .+++++|+|+++||+.+|.
T Consensus 30 ~~~~~~l~~l~~~~~~-------~i~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 30 KQMNQVFEELAKEAFP-------SVLFLSIEAEEL--PEISEKFEITAVPTFVFFR 76 (97)
T ss_pred HHHhHHHHHHHHHhCC-------ceEEEEEccccC--HHHHHhcCCccccEEEEEE
Confidence 4678999999998732 599999999865 8999999999999999984
No 61
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.06 E-value=0.00082 Score=64.17 Aligned_cols=74 Identities=9% Similarity=0.103 Sum_probs=53.9
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccc-cccCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEI-RALED 80 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i-~~y~g 80 (437)
|.++|.++++|+.+... .+.+.+||.+ ++.+++.+|+|.++||+.+|. +|. .+ ..+.|
T Consensus 38 ~~~~p~l~~la~~~~~~------~i~~v~vd~~--~~~~l~~~~~V~~~Pt~~~f~-----~g~--------~~~~~~~G 96 (215)
T TIGR02187 38 KETEQLLEELSEVSPKL------KLEIYDFDTP--EDKEEAEKYGVERVPTTIILE-----EGK--------DGGIRYTG 96 (215)
T ss_pred HHHHHHHHHHHhhCCCc------eEEEEecCCc--ccHHHHHHcCCCccCEEEEEe-----CCe--------eeEEEEee
Confidence 56899999999987421 2455555544 459999999999999999984 332 12 14567
Q ss_pred CCCHHHHHHHHHHhcc
Q 013733 81 WQTADGLLTWINKQTS 96 (437)
Q Consensus 81 ~Rtae~Iv~~i~k~l~ 96 (437)
..+.+.+.+||+..+.
T Consensus 97 ~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 97 IPAGYEFAALIEDIVR 112 (215)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7888899999987753
No 62
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.05 E-value=0.00079 Score=57.97 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=41.4
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 59 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~ 59 (437)
+.+.|.++++|+.+. .+.+.+||+..+ .++.++|+|.+.||+.+|..|
T Consensus 38 ~~~~p~l~~la~~~~--------~i~f~~Vd~~~~--~~l~~~~~v~~vPt~l~fk~G 85 (113)
T cd02989 38 KIMDKHLEILAKKHL--------ETKFIKVNAEKA--PFLVEKLNIKVLPTVILFKNG 85 (113)
T ss_pred HHHHHHHHHHHHHcC--------CCEEEEEEcccC--HHHHHHCCCccCCEEEEEECC
Confidence 468899999998764 389999998875 899999999999999998544
No 63
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.00 E-value=0.0012 Score=59.54 Aligned_cols=46 Identities=9% Similarity=0.066 Sum_probs=39.8
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceee-Ec
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL-WG 56 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLk-lf 56 (437)
+.+.|.++++|+.+.+ .+.|.+||.+.+ ++++.+|+|++-||+. +|
T Consensus 39 k~m~p~l~~la~~~~~-------~~~~~kVDVDe~--~dla~~y~I~~~~t~~~ff 85 (142)
T PLN00410 39 MQMDEVLASVAETIKN-------FAVIYLVDITEV--PDFNTMYELYDPCTVMFFF 85 (142)
T ss_pred HHHHHHHHHHHHHcCC-------ceEEEEEECCCC--HHHHHHcCccCCCcEEEEE
Confidence 5689999999999865 589999999865 9999999999887777 65
No 64
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.001 Score=57.05 Aligned_cols=46 Identities=20% Similarity=0.461 Sum_probs=41.5
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGS 57 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~ 57 (437)
|.++|.|+++|..+.+ +.|.+||++. +.++|++++|+.-||+.+|.
T Consensus 37 k~i~P~~~~La~~y~~--------v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k 82 (106)
T KOG0907|consen 37 KAIAPKFEKLAEKYPD--------VVFLKVDVDE--LEEVAKEFNVKAMPTFVFYK 82 (106)
T ss_pred hhhhhHHHHHHHHCCC--------CEEEEEeccc--CHhHHHhcCceEeeEEEEEE
Confidence 5689999999998763 8999999997 69999999999999999983
No 65
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.86 E-value=0.0018 Score=55.72 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=54.1
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.++|.++++|..+ + .+.+..||...+ ++++.+|+|.+.||+.+|..| ... ..+ .+.|.
T Consensus 38 ~~~~~~l~~la~~~-~-------~i~~~~vd~d~~--~~l~~~~~v~~vPt~~i~~~g-----~~~-----~~~-~~~G~ 96 (113)
T cd02975 38 EVTKQLLEELSELS-D-------KLKLEIYDFDED--KEKAEKYGVERVPTTIFLQDG-----GKD-----GGI-RYYGL 96 (113)
T ss_pred HHHHHHHHHHHHhc-C-------ceEEEEEeCCcC--HHHHHHcCCCcCCEEEEEeCC-----eec-----ceE-EEEec
Confidence 46789999999764 2 489999998864 999999999999999998432 110 112 35576
Q ss_pred CCHHHHHHHHHHhc
Q 013733 82 QTADGLLTWINKQT 95 (437)
Q Consensus 82 Rtae~Iv~~i~k~l 95 (437)
.+.+++.+||..-+
T Consensus 97 ~~~~el~~~i~~i~ 110 (113)
T cd02975 97 PAGYEFASLIEDIV 110 (113)
T ss_pred CchHHHHHHHHHHH
Confidence 77788888887654
No 66
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.54 E-value=0.0083 Score=52.77 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=52.9
Q ss_pred hHHHHHH-HHhCCCCCCCCcceEEEEEeccc---ccCcchhccCcc--cccceeeEcCCCcccCCCCCCCccccccccc-
Q 013733 6 PQYEKVA-RLFNGPNAAHPGIILMTRVDCAL---KINTNLCDKFSV--GHYPMLLWGSPSKFVAGSWEPNQEKKEIRAL- 78 (437)
Q Consensus 6 P~fekaA-~~l~~~~~~~~~~V~~akVDCa~---e~N~~lC~~f~V--~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y- 78 (437)
-+|.++| +..+.. ..+.+|.|--.. ..|.+|..+|+| ..||.+++|. .+. .....|
T Consensus 39 d~F~~~A~e~~~~~-----~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~-----~~~-------~~pv~~p 101 (126)
T PF07912_consen 39 DAFKKLAKEASASS-----DDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFV-----GDK-------EEPVRYP 101 (126)
T ss_dssp HHHHHHHHHHHCC------SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEE-----SST-------TSEEEE-
T ss_pred HHHHHHHHHHhcCC-----CceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEec-----CCC-------CCCccCC
Confidence 3688999 444433 269999996432 358999999999 5699999984 221 123345
Q ss_pred -CCCCCHHHHHHHHHHhcccCCCCC
Q 013733 79 -EDWQTADGLLTWINKQTSRSYGLD 102 (437)
Q Consensus 79 -~g~Rtae~Iv~~i~k~l~~~~~l~ 102 (437)
+|.-+++.|..|+.++.+...|++
T Consensus 102 ~~~~~t~~~l~~fvk~~t~~yiglp 126 (126)
T PF07912_consen 102 FDGDVTADNLQRFVKSNTGLYIGLP 126 (126)
T ss_dssp TCS-S-HHHHHHHHHHTSS--TTST
T ss_pred ccCCccHHHHHHHHHhCCCeeecCC
Confidence 788999999999999988776654
No 67
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.13 E-value=0.0053 Score=53.48 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=41.2
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGS 57 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~ 57 (437)
+.+.|.++++|..+.. .+.|++||.+.. ++++++|+|..-||..+|.
T Consensus 30 k~mdp~l~ela~~~~~-------~~~f~kVDVDev--~dva~~y~I~amPtfvffk 76 (114)
T cd02986 30 LQLDDILSKTSHDLSK-------MASIYLVDVDKV--PVYTQYFDISYIPSTIFFF 76 (114)
T ss_pred HHHHHHHHHHHHHccC-------ceEEEEEecccc--HHHHHhcCceeCcEEEEEE
Confidence 5688999999998853 499999998865 9999999999999999874
No 68
>PHA03005 sulfhydryl oxidase; Provisional
Probab=96.01 E-value=0.027 Score=46.94 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=37.0
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHhcC
Q 013733 235 CGLWVLLHSLSVRIDDGESQFTFTAVCDFIHNFFVCEECRQHFYQMCSSV 284 (437)
Q Consensus 235 CglW~LfH~ltv~~~~~~~~~~~~~i~~fv~~Ff~C~~C~~hF~~~~~~~ 284 (437)
-|+|+.+|.+..++..++..+..+..---|-.-.||.+|+.|-.+.+.++
T Consensus 8 ra~W~vIFivi~k~~~~~~iE~cK~~lytI~~tLPC~~Cr~HA~~ai~kn 57 (96)
T PHA03005 8 RAIWTVIFIVISKAKLDGNIEACKRKLYTICSTLPCPACRRHAKEAIEKN 57 (96)
T ss_pred hhHHHHHHHHHHhccCCCcHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhc
Confidence 36899999999999988765443332222335699999999999888765
No 69
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.74 E-value=0.0097 Score=55.40 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=39.9
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 59 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~ 59 (437)
+.|.|.++++|+.+. .|+|.+||+... .++.+|+|.+.||+.+|..|
T Consensus 99 k~m~~~l~~LA~~~~--------~vkF~kVd~d~~---~l~~~f~v~~vPTlllyk~G 145 (175)
T cd02987 99 AALNSSLLCLAAEYP--------AVKFCKIRASAT---GASDEFDTDALPALLVYKGG 145 (175)
T ss_pred HHHHHHHHHHHHHCC--------CeEEEEEeccch---hhHHhCCCCCCCEEEEEECC
Confidence 467899999998763 399999998853 89999999999999998544
No 70
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.53 E-value=0.02 Score=49.44 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=52.1
Q ss_pred CcchhHHH---HHHHHhCCCCCCCCcceEEEEEecccc-----------cCcchhccCcccccceeeEcCCCcccCCCCC
Q 013733 2 RNYKPQYE---KVARLFNGPNAAHPGIILMTRVDCALK-----------INTNLCDKFSVGHYPMLLWGSPSKFVAGSWE 67 (437)
Q Consensus 2 k~faP~fe---kaA~~l~~~~~~~~~~V~~akVDCa~e-----------~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~ 67 (437)
+.+.|.+. .+++.+++ .+.+.+||...+ .+..++.+|+|+++||+.+|.++ +|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~---gg~-- 97 (125)
T cd02951 30 DKLKRDYLNDPAVQAYIRA-------HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDPE---GGK-- 97 (125)
T ss_pred HHHHHHhcCcHHHHHHHHh-------heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcCC---CCc--
Confidence 34566664 45555553 377888887653 13689999999999999998432 022
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHhcc
Q 013733 68 PNQEKKEIRALEDWQTADGLLTWINKQTS 96 (437)
Q Consensus 68 ~~~~~~~i~~y~g~Rtae~Iv~~i~k~l~ 96 (437)
.+..+.|..+.+.+.++++..+.
T Consensus 98 ------~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 98 ------EIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred ------eeEEecCCCCHHHHHHHHHHHHh
Confidence 13345677888888888877654
No 71
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.09 E-value=0.075 Score=51.62 Aligned_cols=127 Identities=16% Similarity=0.113 Sum_probs=79.6
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
++++|+|+..|..=.+- .|.+|+||-+.+ +.|-.+|-|..-|||+-- ..|. +..|.|.
T Consensus 55 ~~~~~~~~~~a~~s~dL------~v~va~VDvt~n--pgLsGRF~vtaLptIYHv-----kDGe---------Frrysga 112 (248)
T KOG0913|consen 55 SDLIPHLENFATVSLDL------GVKVAKVDVTTN--PGLSGRFLVTALPTIYHV-----KDGE---------FRRYSGA 112 (248)
T ss_pred cchHHHHhccCCccCCC------ceeEEEEEEEec--cccceeeEEEecceEEEe-----eccc---------cccccCc
Confidence 57899999998765554 499999999975 999999999999999753 3343 3568999
Q ss_pred CCHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhccccCccchHHHHHH
Q 013733 82 QTADGLLTWINKQTSRSYGLDDEKFENEQLPSNISDPGQIARAVYDVEEATTTAFDIILDHKMIKSETRASLIRF 156 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~DlE~a~~~al~~~l~~~~l~ge~l~AL~~f 156 (437)
|+-.+++.|+..+--....--++- ....+.......++.+||.++.-.=+.++....-....+.|+..+
T Consensus 113 Rdk~dfisf~~~r~w~~i~p~p~w------~~p~S~~~~~~~~~~kl~~~~rdl~~edlg~~~w~s~~l~a~v~~ 181 (248)
T KOG0913|consen 113 RDKNDFISFEEHREWQSIDPVPEW------EKPDSTEMSSASSLFKLEEELKDLGDEDLGLPEWGSYNLFAGVTE 181 (248)
T ss_pred ccchhHHHHHHhhhhhccCCcchh------cCCCchHHHHHHHHHhhHHHHHhcCchhhcCchhhhhhhhhhHHH
Confidence 999999999976632222110000 011122222334566777754432233444333334445555433
No 72
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.02 E-value=0.039 Score=52.59 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=49.0
Q ss_pred cchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCC
Q 013733 3 NYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQ 82 (437)
Q Consensus 3 ~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~R 82 (437)
.+.|.+++++.. .+ .|.+.+||...+ .+++.+|+|+++||+.++. +| . .+.|..
T Consensus 150 ~~~~~l~~l~~~-~~-------~i~~~~vD~~~~--~~~~~~~~V~~vPtl~i~~-----~~----------~-~~~G~~ 203 (215)
T TIGR02187 150 YAVLMAHKFALA-ND-------KILGEMIEANEN--PDLAEKYGVMSVPKIVINK-----GV----------E-EFVGAY 203 (215)
T ss_pred HHHHHHHHHHHh-cC-------ceEEEEEeCCCC--HHHHHHhCCccCCEEEEec-----CC----------E-EEECCC
Confidence 456777777754 21 588999998865 8999999999999999962 21 1 156788
Q ss_pred CHHHHHHHHHH
Q 013733 83 TADGLLTWINK 93 (437)
Q Consensus 83 tae~Iv~~i~k 93 (437)
+.+.|++|+.+
T Consensus 204 ~~~~l~~~l~~ 214 (215)
T TIGR02187 204 PEEQFLEYILS 214 (215)
T ss_pred CHHHHHHHHHh
Confidence 88999999864
No 73
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.045 Score=53.66 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=56.5
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
|+++|+|+.+|..+.+ -+|.+||.+.- ++.+..+||..-||..+|. +|.. +..+.|
T Consensus 37 k~IaP~Fs~lankYp~--------aVFlkVdVd~c--~~taa~~gV~amPTFiff~-----ng~k--------id~~qG- 92 (288)
T KOG0908|consen 37 KRIAPIFSDLANKYPG--------AVFLKVDVDEC--RGTAATNGVNAMPTFIFFR-----NGVK--------IDQIQG- 92 (288)
T ss_pred HhhhhHHHHhhhhCcc--------cEEEEEeHHHh--hchhhhcCcccCceEEEEe-----cCeE--------eeeecC-
Confidence 6789999999998854 67889997765 7889999999999999984 4431 334444
Q ss_pred CCHHHHHHHHHHhcccCCC
Q 013733 82 QTADGLLTWINKQTSRSYG 100 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~~~~~ 100 (437)
-++.+|-+-|.+++..+.+
T Consensus 93 Ad~~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 93 ADASGLEEKVAKYASTSAA 111 (288)
T ss_pred CCHHHHHHHHHHHhccCcc
Confidence 4567777777777765444
No 74
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=94.49 E-value=0.058 Score=47.28 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=40.3
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccc-----cCcchhccCccc-ccceeeEc
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-----INTNLCDKFSVG-HYPMLLWG 56 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e-----~N~~lC~~f~V~-gYPTLklf 56 (437)
|.++|.+++++..+.+ .+.+.+||.... .|.++..+++|. +.||+.+|
T Consensus 44 r~~~P~l~~l~~~~~~-------~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~ 97 (119)
T cd02952 44 VKAEPVVREALKAAPE-------DCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRW 97 (119)
T ss_pred HhhchhHHHHHHHCCC-------CCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEE
Confidence 5789999999998863 488999998652 246899999999 99999998
No 75
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=94.19 E-value=0.092 Score=57.63 Aligned_cols=74 Identities=11% Similarity=0.176 Sum_probs=51.8
Q ss_pred cchhHH---HHHHHHhCCCCCCCCcceEEEEEecccc--cCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccc
Q 013733 3 NYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRA 77 (437)
Q Consensus 3 ~faP~f---ekaA~~l~~~~~~~~~~V~~akVDCa~e--~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~ 77 (437)
.++|.. +++++.++ .+.+.+||.+.+ ++.+++++|+|.++||+.+|.+ +|... ....
T Consensus 491 ~~e~~~~~~~~v~~~l~--------~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~----~G~~i------~~~r 552 (571)
T PRK00293 491 EFEKYTFSDPQVQQALA--------DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDA----QGQEI------PDAR 552 (571)
T ss_pred HHHHHhcCCHHHHHHhc--------CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECC----CCCCc------cccc
Confidence 345543 56666664 277889998864 3478999999999999999853 23210 0124
Q ss_pred cCCCCCHHHHHHHHHHh
Q 013733 78 LEDWQTADGLLTWINKQ 94 (437)
Q Consensus 78 y~g~Rtae~Iv~~i~k~ 94 (437)
+.|..+.+++.+++++-
T Consensus 553 ~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 553 VTGFMDAAAFAAHLRQL 569 (571)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 56888999999998863
No 76
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=94.12 E-value=0.16 Score=46.07 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=52.8
Q ss_pred hhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC-CC
Q 013733 5 KPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-QT 83 (437)
Q Consensus 5 aP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~-Rt 83 (437)
.-+|+++|+.+.+ .+.++.++ +.+++.+++|.. |+|.+|.++ . .....|.|. .+
T Consensus 9 ~~~f~~~A~~~~~-------~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~-----~-------~~~~~y~~~~~~ 63 (184)
T PF13848_consen 9 FEIFEEAAEKLKG-------DYQFGVTF-----NEELAKKYGIKE-PTIVVYKKF-----D-------EKPVVYDGDKFT 63 (184)
T ss_dssp HHHHHHHHHHHTT-------TSEEEEEE------HHHHHHCTCSS-SEEEEEECT-----T-------TSEEEESSSTTS
T ss_pred HHHHHHHHHhCcC-------CcEEEEEc-----HHHHHHHhCCCC-CcEEEeccC-----C-------CCceecccccCC
Confidence 3479999999986 48888887 268999999999 999998532 1 113467887 89
Q ss_pred HHHHHHHHHHhccc
Q 013733 84 ADGLLTWINKQTSR 97 (437)
Q Consensus 84 ae~Iv~~i~k~l~~ 97 (437)
.++|.+||.+..-+
T Consensus 64 ~~~l~~fI~~~~~P 77 (184)
T PF13848_consen 64 PEELKKFIKKNSFP 77 (184)
T ss_dssp HHHHHHHHHHHSST
T ss_pred HHHHHHHHHHhccc
Confidence 99999999987543
No 77
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=94.00 E-value=0.22 Score=44.08 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=56.5
Q ss_pred chhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCccc--ccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 4 YKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG--HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 4 faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~--gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+...+.++|+.|++. .+.++-||...+ ..+.+.|||. +||++.++... ++. ...+.|.
T Consensus 42 ~~~~l~~vAk~~kgk------~i~Fv~vd~~~~--~~~~~~fgl~~~~~P~v~i~~~~---~~K---------Y~~~~~~ 101 (130)
T cd02983 42 YLEILKSVAEKFKKK------PWGWLWTEAGAQ--LDLEEALNIGGFGYPAMVAINFR---KMK---------FATLKGS 101 (130)
T ss_pred HHHHHHHHHHHhcCC------cEEEEEEeCccc--HHHHHHcCCCccCCCEEEEEecc---cCc---------cccccCc
Confidence 567899999999873 289999998876 6699999996 49999997432 110 1125578
Q ss_pred CCHHHHHHHHHHhccc
Q 013733 82 QTADGLLTWINKQTSR 97 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~~ 97 (437)
-+.++|.+|+++.+.-
T Consensus 102 ~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 102 FSEDGINEFLRELSYG 117 (130)
T ss_pred cCHHHHHHHHHHHHcC
Confidence 8999999999998753
No 78
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=93.44 E-value=0.092 Score=40.07 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeE
Q 013733 3 NYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 55 (437)
Q Consensus 3 ~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLkl 55 (437)
.++|.+++++.... .+.+..||...+ +++..+|+|.+.||+.+
T Consensus 16 ~~~~~l~~l~~~~~--------~i~~~~id~~~~--~~l~~~~~i~~vPti~i 58 (67)
T cd02973 16 DAVQAANRIAALNP--------NISAEMIDAAEF--PDLADEYGVMSVPAIVI 58 (67)
T ss_pred HHHHHHHHHHHhCC--------ceEEEEEEcccC--HhHHHHcCCcccCEEEE
Confidence 45677787766421 489999998765 88999999999999976
No 79
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=93.21 E-value=0.094 Score=49.62 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=36.9
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 59 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~ 59 (437)
+.|.|+++++|+.+. .++|.+||... ...+|+|.+.|||.+|..|
T Consensus 118 ~~m~~~l~~LA~k~~--------~vkFvkI~ad~-----~~~~~~i~~lPTlliyk~G 162 (192)
T cd02988 118 RLLNQHLSELARKFP--------DTKFVKIISTQ-----CIPNYPDKNLPTILVYRNG 162 (192)
T ss_pred HHHHHHHHHHHHHCC--------CCEEEEEEhHH-----hHhhCCCCCCCEEEEEECC
Confidence 467899999999874 38999999763 2579999999999998544
No 80
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=92.67 E-value=0.29 Score=44.17 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=53.0
Q ss_pred cchhHHHHHHHHhCCCCCCCCcceEEEEEecccc--------------------cCcchhccCcccccceeeEcCCCccc
Q 013733 3 NYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--------------------INTNLCDKFSVGHYPMLLWGSPSKFV 62 (437)
Q Consensus 3 ~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e--------------------~N~~lC~~f~V~gYPTLklf~p~~~~ 62 (437)
...|.+.++++.+.+. .+.+..|++... .+..+++.|+|.++|+++++.+
T Consensus 78 ~~~~~l~~~~~~~~~~------~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~---- 147 (173)
T PRK03147 78 KEMPYMNELYPKYKEK------GVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDK---- 147 (173)
T ss_pred HHHHHHHHHHHHhhcC------CeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEEECC----
Confidence 4568899999988764 377777887532 2468899999999999988732
Q ss_pred CCCCCCCcccccccccCCCCCHHHHHHHHHH
Q 013733 63 AGSWEPNQEKKEIRALEDWQTADGLLTWINK 93 (437)
Q Consensus 63 ~G~~~~~~~~~~i~~y~g~Rtae~Iv~~i~k 93 (437)
+|.. +..+.|..+.+.+.+++++
T Consensus 148 ~g~i--------~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 148 DGKV--------VKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred CCcE--------EEEEeCCCCHHHHHHHHHH
Confidence 2321 2345688889999888764
No 81
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=92.45 E-value=0.28 Score=42.87 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=43.5
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCc---------chhccC----cccccceeeEcCCCcccCCCCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINT---------NLCDKF----SVGHYPMLLWGSPSKFVAGSWEP 68 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~---------~lC~~f----~V~gYPTLklf~p~~~~~G~~~~ 68 (437)
|.|+|.++++++.. .+.|..||-..+... ++..+| +|.+.||+.+|. +|.
T Consensus 39 ~~~~P~l~~~~~~~---------~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k-----~Gk--- 101 (122)
T TIGR01295 39 RKFSGTLSGVVAQT---------KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHIT-----DGK--- 101 (122)
T ss_pred HHHhHHHHHHHHhc---------CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEe-----CCe---
Confidence 67999999999862 256777786643111 344555 466699999984 442
Q ss_pred CcccccccccCC-CCCHHHHHHHH
Q 013733 69 NQEKKEIRALED-WQTADGLLTWI 91 (437)
Q Consensus 69 ~~~~~~i~~y~g-~Rtae~Iv~~i 91 (437)
.+....| ..+.++|.+|+
T Consensus 102 -----~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 102 -----QVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred -----EEEEEeCCCCCHHHHHHHh
Confidence 1223345 45688887775
No 82
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=92.29 E-value=0.17 Score=51.82 Aligned_cols=112 Identities=22% Similarity=0.215 Sum_probs=71.8
Q ss_pred HHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHH
Q 013733 8 YEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGL 87 (437)
Q Consensus 8 fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~I 87 (437)
.|-+|+.+... .|.||-||-..+ ..+++++|+..-+||++|. .|. +..|.|.|+++.|
T Consensus 79 LELaAQVlE~~------gigfg~VD~~Kd--~klAKKLgv~E~~SiyVfk-----d~~---------~IEydG~~saDtL 136 (383)
T PF01216_consen 79 LELAAQVLEDK------GIGFGMVDSKKD--AKLAKKLGVEEEGSIYVFK-----DGE---------VIEYDGERSADTL 136 (383)
T ss_dssp HHHHHHHCGGC------TEEEEEEETTTT--HHHHHHHT--STTEEEEEE-----TTE---------EEEE-S--SHHHH
T ss_pred HHHHHHhcccc------CcceEEeccHHH--HHHHHhcCccccCcEEEEE-----CCc---------EEEecCccCHHHH
Confidence 35566777543 499999998876 9999999999999999983 332 4578999999999
Q ss_pred HHHHHHhcccCCCCCCc-cccccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHh-hcc---ccCccchHHHHHHHHHHHH
Q 013733 88 LTWINKQTSRSYGLDDE-KFENEQLPSNISDPGQIARAVYDVEEATTTAFDIIL-DHK---MIKSETRASLIRFLQVLVA 162 (437)
Q Consensus 88 v~~i~k~l~~~~~l~~~-k~~~~~~~~~~~~~~~~~~~~~DlE~a~~~al~~~l-~~~---~l~ge~l~AL~~fl~~l~~ 162 (437)
+.||..-+. +|- .+.+ ..|. .+++.|= ..+ .++++.-.+++.|-..-..
T Consensus 137 VeFl~dl~e-----dPVeiIn~------------------~~e~---~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~ 190 (383)
T PF01216_consen 137 VEFLLDLLE-----DPVEIINN------------------KHEL---KAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEH 190 (383)
T ss_dssp HHHHHHHHS-----SSEEEE-S------------------HHHH---HHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHH
T ss_pred HHHHHHhcc-----cchhhhcC------------------hhhh---hhhhhcccceeEEEEeCCCCcHHHHHHHHHHHh
Confidence 999988764 110 1111 1111 1333221 233 3568777799999888888
Q ss_pred hcCCC
Q 013733 163 HHPSR 167 (437)
Q Consensus 163 ~~P~~ 167 (437)
++|-=
T Consensus 191 F~p~I 195 (383)
T PF01216_consen 191 FQPYI 195 (383)
T ss_dssp CTTTS
T ss_pred hcCce
Confidence 88874
No 83
>PTZ00062 glutaredoxin; Provisional
Probab=91.88 E-value=0.31 Score=46.63 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=46.8
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.+.|.++++|+.+. .+.|.+||.+ |+|.+.||+.+|. +|. .+..+.|.
T Consensus 33 ~~m~~vl~~l~~~~~--------~~~F~~V~~d----------~~V~~vPtfv~~~-----~g~--------~i~r~~G~ 81 (204)
T PTZ00062 33 EQLMDVCNALVEDFP--------SLEFYVVNLA----------DANNEYGVFEFYQ-----NSQ--------LINSLEGC 81 (204)
T ss_pred HHHHHHHHHHHHHCC--------CcEEEEEccc----------cCcccceEEEEEE-----CCE--------EEeeeeCC
Confidence 457889999998763 3999999954 9999999999983 332 23345554
Q ss_pred CCHHHHHHHHHHhcc
Q 013733 82 QTADGLLTWINKQTS 96 (437)
Q Consensus 82 Rtae~Iv~~i~k~l~ 96 (437)
++..|..++.+..+
T Consensus 82 -~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 82 -NTSTLVSFIRGWAQ 95 (204)
T ss_pred -CHHHHHHHHHHHcC
Confidence 47888888877765
No 84
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=91.64 E-value=0.29 Score=41.85 Aligned_cols=67 Identities=19% Similarity=0.334 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCccc----ccce-eeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 7 QYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG----HYPM-LLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 7 ~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~----gYPT-Lklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
.|.+||+.++|- =.++-|||...+...||.++.|. -=|. |+-| .+|.. -..|+-.
T Consensus 39 ~~~~~A~~vkG~-------gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHY-----KdG~f--------HkdYdR~ 98 (112)
T cd03067 39 LLSDVAQAVKGQ-------GTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHY-----KDGDF--------HTEYNRQ 98 (112)
T ss_pred HHHHHHHHhcCc-------eeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcc-----cCCCc--------cccccch
Confidence 688999999884 46777999986679999999999 4443 4444 44443 2467778
Q ss_pred CCHHHHHHHHHH
Q 013733 82 QTADGLLTWINK 93 (437)
Q Consensus 82 Rtae~Iv~~i~k 93 (437)
-+..+|+.|++.
T Consensus 99 ~t~kSmv~FlrD 110 (112)
T cd03067 99 LTFKSMVAFLRD 110 (112)
T ss_pred hhHHHHHHHhhC
Confidence 899999999864
No 85
>PHA02125 thioredoxin-like protein
Probab=91.35 E-value=0.14 Score=40.48 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.1
Q ss_pred eEEEEEecccccCcchhccCcccccceee
Q 013733 26 ILMTRVDCALKINTNLCDKFSVGHYPMLL 54 (437)
Q Consensus 26 V~~akVDCa~e~N~~lC~~f~V~gYPTLk 54 (437)
+.+.+||+..+ .+++.+|+|+++||+.
T Consensus 25 ~~~~~vd~~~~--~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 25 YTYVDVDTDEG--VELTAKHHIRSLPTLV 51 (75)
T ss_pred heEEeeeCCCC--HHHHHHcCCceeCeEE
Confidence 45678998764 8999999999999987
No 86
>smart00594 UAS UAS domain.
Probab=90.99 E-value=0.41 Score=41.51 Aligned_cols=60 Identities=13% Similarity=0.263 Sum_probs=43.3
Q ss_pred ceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHHHHHH
Q 013733 25 IILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 91 (437)
Q Consensus 25 ~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~~i 91 (437)
...+.++|-+..++.+++.+|+|++||++.++-|. .|.. ...-+..+.|..+++.|+.++
T Consensus 62 ~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~---~g~~----~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 62 NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPR---TGQR----VIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecC---CCce----eEEEeccccCCCCHHHHHHhh
Confidence 37777889887778899999999999999998433 1110 001133467899999998875
No 87
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=90.23 E-value=0.8 Score=37.25 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=47.5
Q ss_pred chhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCC
Q 013733 4 YKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQT 83 (437)
Q Consensus 4 faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rt 83 (437)
...+|.++|..+.+ .+.|+.+. +.++..++++.. |++.+|.+. . .....|.|..+
T Consensus 32 ~~~~f~~~A~~~r~-------~~~F~~~~-----~~~~~~~~~~~~-~~i~l~~~~-----~-------~~~~~y~g~~~ 86 (97)
T cd02981 32 EYKTFEKVAESLRD-------DYGFGHTS-----DKEVAKKLKVKP-GSVVLFKPF-----E-------EEPVEYDGEFT 86 (97)
T ss_pred HHHHHHHHHHhccc-------CCeEEEEC-----hHHHHHHcCCCC-CceEEeCCc-----c-------cCCccCCCCCC
Confidence 35689999998875 37887666 257777788764 999998543 0 12345889888
Q ss_pred HHHHHHHHHH
Q 013733 84 ADGLLTWINK 93 (437)
Q Consensus 84 ae~Iv~~i~k 93 (437)
.+.|.+||..
T Consensus 87 ~~~l~~fi~~ 96 (97)
T cd02981 87 EESLVEFIKD 96 (97)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 88
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=90.11 E-value=0.15 Score=42.63 Aligned_cols=41 Identities=15% Similarity=0.388 Sum_probs=26.8
Q ss_pred cchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHHHHHH
Q 013733 39 TNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 91 (437)
Q Consensus 39 ~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~~i 91 (437)
.++.++++|+++||+.++. .+|. .+..+.|..+.++|.+++
T Consensus 72 ~~l~~~~~v~gtPt~~~~d----~~G~--------~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLD----KDGK--------IVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHHTT--SSSEEEECT----TTSC--------EEEEEESS--HHHHHHHH
T ss_pred HHHHHHcCCCccCEEEEEc----CCCC--------EEEEecCCCCHHHHHhhC
Confidence 4699999999999999973 2332 133467889999988764
No 89
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=90.08 E-value=0.54 Score=42.47 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=50.9
Q ss_pred chhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCccc--ccceeeEcCCCcccCCCCCCCcccccccccCCC
Q 013733 4 YKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG--HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW 81 (437)
Q Consensus 4 faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~--gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~ 81 (437)
+.-.++++|+.+++ .+.++-|||... ..++..++|. .+|++.++.+. .+. -.. .+.+.
T Consensus 113 ~~~~l~~~a~~~~~-------~~~f~~~d~~~~--~~~~~~~~i~~~~~P~~vi~~~~---~~~-------~~~-~~~~~ 172 (184)
T PF13848_consen 113 FKKELQDIAKKFKG-------KINFVYVDADDF--PRLLKYFGIDEDDLPALVIFDSN---KGK-------YYY-LPEGE 172 (184)
T ss_dssp HHHHHHHHHHCTTT-------TSEEEEEETTTT--HHHHHHTTTTTSSSSEEEEEETT---TSE-------EEE---SSC
T ss_pred HHHHHHHHHHhcCC-------eEEEEEeehHHh--HHHHHHcCCCCccCCEEEEEECC---CCc-------EEc-CCCCC
Confidence 44567788887765 599999999954 8899999999 89999987321 110 001 12577
Q ss_pred CCHHHHHHHHHH
Q 013733 82 QTADGLLTWINK 93 (437)
Q Consensus 82 Rtae~Iv~~i~k 93 (437)
.+.+.|.+|+++
T Consensus 173 ~~~~~i~~Fl~d 184 (184)
T PF13848_consen 173 ITPESIEKFLND 184 (184)
T ss_dssp GCHHHHHHHHHH
T ss_pred CCHHHHHHHhcC
Confidence 899999999864
No 90
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.02 E-value=0.79 Score=46.42 Aligned_cols=86 Identities=13% Similarity=0.177 Sum_probs=59.4
Q ss_pred chhHHHHHHHHhCCCCCC-CCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCC
Q 013733 4 YKPQYEKVARLFNGPNAA-HPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQ 82 (437)
Q Consensus 4 faP~fekaA~~l~~~~~~-~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~R 82 (437)
+.-||.-+|..+...++. +..+|.++.||-+.- +++-++++++.-|++++|+|..- .. ++......++-+.
T Consensus 82 ~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~--p~~Fq~l~ln~~P~l~~f~P~~~---n~---~~s~~~d~~~~g~ 153 (331)
T KOG2603|consen 82 AEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES--PQVFQQLNLNNVPHLVLFSPAKG---NK---KRSDQMDQQDLGF 153 (331)
T ss_pred HHHHHHHHHHHhhccCCCCCcceEEEEEEecccc--HHHHHHhcccCCCeEEEeCCCcc---cc---ccCccchhhhcch
Confidence 346888899877543321 124899999997764 99999999999999999977522 11 1111222233346
Q ss_pred CHHHHHHHHHHhccc
Q 013733 83 TADGLLTWINKQTSR 97 (437)
Q Consensus 83 tae~Iv~~i~k~l~~ 97 (437)
.+|.|++|++++.+.
T Consensus 154 ~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 154 EAEQIAQFVADRTKV 168 (331)
T ss_pred hHHHHHHHHHHhhhh
Confidence 699999999998753
No 91
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=89.54 E-value=0.68 Score=39.33 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=49.1
Q ss_pred HHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHHHH
Q 013733 10 KVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLT 89 (437)
Q Consensus 10 kaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~ 89 (437)
++.+.++. ...+.++|-+..+...++..|++.+|||+.++.|. +|. .+..+.|..+.+.++.
T Consensus 44 ~v~~~l~~-------~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~---~g~--------~l~~~~G~~~~~~f~~ 105 (114)
T cd02958 44 SVKEFIRE-------NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPR---TGE--------VLKVWSGNITPEDLLS 105 (114)
T ss_pred HHHHHHHh-------CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCc---cCc--------EeEEEcCCCCHHHHHH
Confidence 45666654 25566788766556789999999999999998431 232 2455678899999998
Q ss_pred HHHHhc
Q 013733 90 WINKQT 95 (437)
Q Consensus 90 ~i~k~l 95 (437)
-+++..
T Consensus 106 ~L~~~~ 111 (114)
T cd02958 106 QLIEFL 111 (114)
T ss_pred HHHHHH
Confidence 887654
No 92
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=88.82 E-value=0.61 Score=38.50 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=31.5
Q ss_pred hhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeE
Q 013733 5 KPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 55 (437)
Q Consensus 5 aP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLkl 55 (437)
.+.++++++.+. .+.+..||-+.. .+++.+|+|.+.||+.+
T Consensus 31 ~~~~~~l~~~~~--------~i~~~~vd~~~~--~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 31 VQALNLMAVLNP--------NIEHEMIDGALF--QDEVEERGIMSVPAIFL 71 (89)
T ss_pred HHHHHHHHHHCC--------CceEEEEEhHhC--HHHHHHcCCccCCEEEE
Confidence 455566665432 488999997765 88999999999999965
No 93
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=87.31 E-value=0.59 Score=37.12 Aligned_cols=42 Identities=12% Similarity=-0.046 Sum_probs=34.1
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeE
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 55 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLkl 55 (437)
+.++|.++++++.+.. .+.+.+|| + .+.+.+|+|.+.||+.+
T Consensus 14 ~~~~~~~~~~~~e~~~-------~~~~~~v~-~----~~~a~~~~v~~vPti~i 55 (76)
T TIGR00412 14 QMTEKNVKKAVEELGI-------DAEFEKVT-D----MNEILEAGVTATPGVAV 55 (76)
T ss_pred HHHHHHHHHHHHHcCC-------CeEEEEeC-C----HHHHHHcCCCcCCEEEE
Confidence 3578999999998764 48888888 2 45578999999999987
No 94
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=86.95 E-value=1.6 Score=37.55 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=51.4
Q ss_pred cchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccc----cceeeEcCCCcccCCCCCCCccccccccc
Q 013733 3 NYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH----YPMLLWGSPSKFVAGSWEPNQEKKEIRAL 78 (437)
Q Consensus 3 ~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~g----YPTLklf~p~~~~~G~~~~~~~~~~i~~y 78 (437)
.+...+.++|+.+++ + +|.++-||-... ......||+.+ .|++++... .+.. . ..
T Consensus 35 ~~~~~~~~vAk~fk~-g-----ki~Fv~~D~~~~--~~~l~~fgl~~~~~~~P~~~i~~~----~~~K-------Y--~~ 93 (111)
T cd03073 35 YWRNRVLKVAKDFPD-R-----KLNFAVADKEDF--SHELEEFGLDFSGGEKPVVAIRTA----KGKK-------Y--VM 93 (111)
T ss_pred HHHHHHHHHHHHCcC-C-----eEEEEEEcHHHH--HHHHHHcCCCcccCCCCEEEEEeC----CCCc-------c--CC
Confidence 367889999999993 1 599999998865 45888999985 999999631 1110 0 02
Q ss_pred CCCC-CHHHHHHHHHHh
Q 013733 79 EDWQ-TADGLLTWINKQ 94 (437)
Q Consensus 79 ~g~R-tae~Iv~~i~k~ 94 (437)
.+.- +.+.|.+|+.+.
T Consensus 94 ~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 94 EEEFSDVDALEEFLEDF 110 (111)
T ss_pred CcccCCHHHHHHHHHHh
Confidence 3455 899999999764
No 95
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=86.46 E-value=1.2 Score=38.61 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=50.3
Q ss_pred HHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHHHH
Q 013733 10 KVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLT 89 (437)
Q Consensus 10 kaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~ 89 (437)
++.+.++. ...+-..|.+..+...++..+++++||++.+.-+. ++.. .-+..+.|..++++|+.
T Consensus 44 ~v~~~ln~-------~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~---~~~~------~vv~~i~G~~~~~~ll~ 107 (116)
T cd02991 44 EVIEYINT-------RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLK---DNRM------TIVGRLEGLIQPEDLIN 107 (116)
T ss_pred HHHHHHHc-------CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEec---CCce------EEEEEEeCCCCHHHHHH
Confidence 45556654 37777899888777889999999999999887321 1111 12345679999999999
Q ss_pred HHHHhc
Q 013733 90 WINKQT 95 (437)
Q Consensus 90 ~i~k~l 95 (437)
.+..-+
T Consensus 108 ~L~~~~ 113 (116)
T cd02991 108 RLTFIM 113 (116)
T ss_pred HHHHHH
Confidence 886643
No 96
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=86.32 E-value=1.4 Score=43.96 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=51.6
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccc-------cCcchhccCcccccceeeEcCCCcccCCCCCCCccccc
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-------INTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKE 74 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e-------~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~ 74 (437)
+.++|+++++++.++- .|....||.... .+..+.++|+|.+.||++++.++ +|..
T Consensus 182 ~~~~P~L~~la~~yg~-------~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~---~~~v-------- 243 (271)
T TIGR02740 182 HQQAPILQAFEDRYGI-------EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD---PNQF-------- 243 (271)
T ss_pred HHHhHHHHHHHHHcCc-------EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC---CCEE--------
Confidence 4678999999998742 355555665321 13578999999999999998431 1110
Q ss_pred ccccCCCCCHHHHHHHHHHhcc
Q 013733 75 IRALEDWQTADGLLTWINKQTS 96 (437)
Q Consensus 75 i~~y~g~Rtae~Iv~~i~k~l~ 96 (437)
.....|..+.+.|.+.|..-..
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHhc
Confidence 1123477888999888876543
No 97
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=85.72 E-value=2.1 Score=36.77 Aligned_cols=73 Identities=18% Similarity=0.098 Sum_probs=53.8
Q ss_pred cchhHHHHHHHH---hCCCCCCCCcceEEEEEecccccCcchhccCcccc--cceeeEcCCCcccCCCCCCCcccccccc
Q 013733 3 NYKPQYEKVARL---FNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH--YPMLLWGSPSKFVAGSWEPNQEKKEIRA 77 (437)
Q Consensus 3 ~faP~fekaA~~---l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~g--YPTLklf~p~~~~~G~~~~~~~~~~i~~ 77 (437)
.+.+.+++||+. +++ +|.++-||-+.. ......||+.+ .|.+.+.. ..++.. ...
T Consensus 31 ~~~~~~~~vAk~~~~~kg-------ki~Fv~~d~~~~--~~~~~~fgl~~~~~P~i~i~~---~~~~~K--------y~~ 90 (111)
T cd03072 31 SLKEFKQAVARQLISEKG-------AINFLTADGDKF--RHPLLHLGKTPADLPVIAIDS---FRHMYL--------FPD 90 (111)
T ss_pred HHHHHHHHHHHHHHhcCc-------eEEEEEEechHh--hhHHHHcCCCHhHCCEEEEEc---chhcCc--------CCC
Confidence 356789999999 775 699999998876 44889999998 99999852 111110 111
Q ss_pred cCCCCCHHHHHHHHHHhc
Q 013733 78 LEDWQTADGLLTWINKQT 95 (437)
Q Consensus 78 y~g~Rtae~Iv~~i~k~l 95 (437)
+.+.-+++.|.+|+.+.+
T Consensus 91 ~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 91 FEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred CccccCHHHHHHHHHHHh
Confidence 346678999999998865
No 98
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=84.97 E-value=0.85 Score=39.42 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=32.4
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccc--cceeeEcCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH--YPMLLWGSP 58 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~g--YPTLklf~p 58 (437)
+.|.|.+++.+....... .+.+..||... ..+...|++.+ +||+.+|.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~-----~fv~v~vd~~~---~~~~~~~~~~g~~vPt~~f~~~ 85 (117)
T cd02959 35 KALKPKFAESKEISELSH-----NFVMVNLEDDE---EPKDEEFSPDGGYIPRILFLDP 85 (117)
T ss_pred HHHHHHHhhhHHHHhhcC-----cEEEEEecCCC---CchhhhcccCCCccceEEEECC
Confidence 467899999877543221 35555566332 24557899987 999999843
No 99
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=83.62 E-value=1.9 Score=46.93 Aligned_cols=71 Identities=15% Similarity=0.050 Sum_probs=48.6
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEE----------------------------EecccccCcchhccCccccccee
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTR----------------------------VDCALKINTNLCDKFSVGHYPML 53 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~ak----------------------------VDCa~e~N~~lC~~f~V~gYPTL 53 (437)
+...|+++++++.++..+ +.|.. |+++. +..+.+.|+|+++||+
T Consensus 72 k~emP~L~eL~~e~k~~~------v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~--~~~lak~fgV~giPTt 143 (521)
T PRK14018 72 LSELGETEKWAQDAKFSS------ANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN--GGTLAQSLNISVYPSW 143 (521)
T ss_pred HHHHHHHHHHHHHhccCC------eEEEEEecccccccccHHHHHHHHHhCCCcccceeccc--cHHHHHHcCCCCcCeE
Confidence 456899999999876432 33322 34443 4789999999999999
Q ss_pred eEcCCCcccCCCCCCCcccccccccCCCCCHHHHHHHHH
Q 013733 54 LWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 92 (437)
Q Consensus 54 klf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~~i~ 92 (437)
.++- ++|.. +..+.|..+.+.|.++|+
T Consensus 144 ~IID----kdGkI--------V~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 144 AIIG----KDGDV--------QRIVKGSISEAQALALIR 170 (521)
T ss_pred EEEc----CCCeE--------EEEEeCCCCHHHHHHHHH
Confidence 7762 23331 234568888888988886
No 100
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=83.16 E-value=1.4 Score=37.92 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=34.5
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccc--------------------cCcchhccCcccccceeeEcC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--------------------INTNLCDKFSVGHYPMLLWGS 57 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e--------------------~N~~lC~~f~V~gYPTLklf~ 57 (437)
+.+.|++.++++.+.+... .-.|....+|...+ .+..+++.|+|.++||++++.
T Consensus 34 ~~~~p~l~~~~~~~~~~~~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid 107 (131)
T cd03009 34 RAFTPKLVEFYEKLKESGK--NFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILD 107 (131)
T ss_pred HHHhHHHHHHHHHHHhcCC--CEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence 4568899999888865310 01234444443321 114688899999999999984
No 101
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=83.00 E-value=2.5 Score=33.98 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=39.3
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccc---------------------cCcchhccCcccccceeeEcC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------------------INTNLCDKFSVGHYPMLLWGS 57 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e---------------------~N~~lC~~f~V~gYPTLklf~ 57 (437)
+++.|.+.++.+.+.+. .+.+..|+++.+ .+..+++.|+|.++|+++++-
T Consensus 35 ~~~~~~l~~~~~~~~~~------~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d 105 (116)
T cd02966 35 RAEMPELEALAKEYKDD------GVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLID 105 (116)
T ss_pred HHHhHHHHHHHHHhCCC------CeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccceEEEEC
Confidence 35678888888888643 489999998862 126899999999999999873
No 102
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.74 E-value=1.3 Score=42.99 Aligned_cols=48 Identities=15% Similarity=0.358 Sum_probs=42.0
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccc------cceeeEcC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH------YPMLLWGS 57 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~g------YPTLklf~ 57 (437)
++++|.|.++...++.. .+++|+||--.. ++.+.+|+|.. -||+-+|.
T Consensus 160 v~~spvfaeLS~kyn~~------~lkFGkvDiGrf--pd~a~kfris~s~~srQLPT~ilFq 213 (265)
T KOG0914|consen 160 VRFSPVFAELSIKYNNN------LLKFGKVDIGRF--PDVAAKFRISLSPGSRQLPTYILFQ 213 (265)
T ss_pred cccccccHHHHHHhCCC------CCcccceeeccC--cChHHheeeccCcccccCCeEEEEc
Confidence 68999999999999874 499999998877 89999999974 78999984
No 103
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=79.42 E-value=3.5 Score=28.52 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=26.3
Q ss_pred ceEEEEEecccccCcchhc---cCcccccceeeEcCCC
Q 013733 25 IILMTRVDCALKINTNLCD---KFSVGHYPMLLWGSPS 59 (437)
Q Consensus 25 ~V~~akVDCa~e~N~~lC~---~f~V~gYPTLklf~p~ 59 (437)
.+.+..+||... ..... .+++.++|++.++.++
T Consensus 28 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 28 GVKFEAVDVDED--PALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CcEEEEEEcCCC--hHHhhHHHhCCCccccEEEEEeCC
Confidence 599999999986 44444 8999999999997543
No 104
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=79.31 E-value=5 Score=33.71 Aligned_cols=71 Identities=10% Similarity=0.174 Sum_probs=47.3
Q ss_pred chhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCC
Q 013733 4 YKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQT 83 (437)
Q Consensus 4 faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rt 83 (437)
...+|.++|..+.+ ...|+-.. +..+...+++ .|++.+|.|..+..- .+ .....|.|.-+
T Consensus 33 ~~~~F~~vA~~~R~-------d~~F~~~~-----~~~~~~~~~~--~~~ivl~~p~~~~~k-~d-----e~~~~y~g~~~ 92 (104)
T cd03069 33 LLSEFLKAADTLRE-------SFRFAHTS-----DKQLLEKYGY--GEGVVLFRPPRLSNK-FE-----DSSVKFDGDLD 92 (104)
T ss_pred HHHHHHHHHHhhhh-------cCEEEEEC-----hHHHHHhcCC--CCceEEEechhhhcc-cC-----cccccccCcCC
Confidence 34689999998875 35665443 2466778888 799999976432210 01 11235888888
Q ss_pred HHHHHHHHHHh
Q 013733 84 ADGLLTWINKQ 94 (437)
Q Consensus 84 ae~Iv~~i~k~ 94 (437)
.+.|.+||...
T Consensus 93 ~~~l~~fi~~~ 103 (104)
T cd03069 93 SSKIKKFIREN 103 (104)
T ss_pred HHHHHHHHHhh
Confidence 99999999754
No 105
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=72.53 E-value=1.7 Score=37.57 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=27.0
Q ss_pred ceEEEEEecccccCcchhccCcccccceeeEcCCCc
Q 013733 25 IILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSK 60 (437)
Q Consensus 25 ~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~ 60 (437)
.+..|.|+-+.+ ..|..+|+|..+|++.+|+.|.
T Consensus 60 ~~~~avv~~~~e--~~L~~r~gv~~~PaLvf~R~g~ 93 (107)
T PF07449_consen 60 RFRGAVVARAAE--RALAARFGVRRWPALVFFRDGR 93 (107)
T ss_dssp SEEEEEEEHHHH--HHHHHHHT-TSSSEEEEEETTE
T ss_pred ccceEEECchhH--HHHHHHhCCccCCeEEEEECCE
Confidence 577888885555 8999999999999999985443
No 106
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=70.64 E-value=7.8 Score=32.60 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=27.2
Q ss_pred CcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHHHH
Q 013733 38 NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLT 89 (437)
Q Consensus 38 N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~ 89 (437)
+.+++++|+|.+.||++++.++ | . ...+.|..+.++|.+
T Consensus 82 ~~~~~~~~~i~~~P~~~vid~~----g-i--------~~~~~g~~~~~~~~~ 120 (123)
T cd03011 82 DGVISARWGVSVTPAIVIVDPG----G-I--------VFVTTGVTSEWGLRL 120 (123)
T ss_pred CcHHHHhCCCCcccEEEEEcCC----C-e--------EEEEeccCCHHHHHh
Confidence 3689999999999999998432 2 1 123456677777643
No 107
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=67.61 E-value=6.3 Score=34.11 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=34.6
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEeccccc-----------------------CcchhccCcccccceeeEcC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-----------------------NTNLCDKFSVGHYPMLLWGS 57 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~-----------------------N~~lC~~f~V~gYPTLklf~ 57 (437)
+...|+++++++.+++.. ..+.+..|+..... ...+.+.|+|.++||++++.
T Consensus 33 ~~~~p~l~~l~~~~~~~~----~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~iPt~~lid 107 (132)
T cd02964 33 RAFTPKLVEFYEKLKEEG----KNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLK 107 (132)
T ss_pred HHHHHHHHHHHHHHhhcC----CCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCCCCEEEEEC
Confidence 346789999988887531 13555555544321 13566779999999999983
No 108
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=67.02 E-value=6.6 Score=34.51 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=28.4
Q ss_pred HHHHHhCCCCCCCCcceEEEEEecccccCcchhc--------cCcccccceeeEcCC
Q 013733 10 KVARLFNGPNAAHPGIILMTRVDCALKINTNLCD--------KFSVGHYPMLLWGSP 58 (437)
Q Consensus 10 kaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~--------~f~V~gYPTLklf~p 58 (437)
++++.++. ...+.+||-+.. +++.. .|++.|+||+.++.|
T Consensus 42 ~V~~~l~~-------~fv~VkvD~~~~--~~~~~~~~~~~~~~~~~~G~Pt~vfl~~ 89 (124)
T cd02955 42 EVAAILNE-------NFVPIKVDREER--PDVDKIYMNAAQAMTGQGGWPLNVFLTP 89 (124)
T ss_pred HHHHHHhC-------CEEEEEEeCCcC--cHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 45555553 367779997653 67765 368999999999854
No 109
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=66.25 E-value=4.5 Score=39.29 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=33.3
Q ss_pred ccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHHHHHHHHh
Q 013733 36 KINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 94 (437)
Q Consensus 36 e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~~i~k~ 94 (437)
+.|.++++++||+|.||+.+ .+|. .+.|..+++.|.++|++.
T Consensus 189 ~~~~~la~~lgi~gTPtiv~------~~G~-----------~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 189 ADHYALGVQFGVQGTPAIVL------SNGT-----------LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred HHhHHHHHHcCCccccEEEE------cCCe-----------EeeCCCCHHHHHHHHHHc
Confidence 45799999999999999985 2332 245888999999998764
No 110
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=63.31 E-value=9.5 Score=32.45 Aligned_cols=19 Identities=11% Similarity=-0.027 Sum_probs=15.6
Q ss_pred CcchhccCcccccceeeEc
Q 013733 38 NTNLCDKFSVGHYPMLLWG 56 (437)
Q Consensus 38 N~~lC~~f~V~gYPTLklf 56 (437)
+..+++.|+|.++|+.+++
T Consensus 89 ~~~~~~~~~v~~~P~~~~l 107 (127)
T cd03010 89 DGRVGIDLGVYGVPETFLI 107 (127)
T ss_pred cchHHHhcCCCCCCeEEEE
Confidence 3688999999999966665
No 111
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=62.76 E-value=14 Score=43.80 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=51.6
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEeccc-------------------------ccCcchhccCcccccceeeEc
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KINTNLCDKFSVGHYPMLLWG 56 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~-------------------------e~N~~lC~~f~V~gYPTLklf 56 (437)
+...|+++++++.+++.+ +.|..|.+.. ..+..+.++|+|.++||++++
T Consensus 436 ~~e~P~L~~l~~~y~~~~------~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~iPt~ili 509 (1057)
T PLN02919 436 MHVLPDLEFLEKKYKDQP------FTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSSWPTFAVV 509 (1057)
T ss_pred HhHhHHHHHHHHHcCCCC------eEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcCCCccceEEEE
Confidence 457899999999987642 5565564321 113467789999999999998
Q ss_pred CCCcccCCCCCCCcccccccccCCCCCHHHHHHHHHHhc
Q 013733 57 SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 95 (437)
Q Consensus 57 ~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~~i~k~l 95 (437)
- ++|.. +..+.|....+.|.+++.+.+
T Consensus 510 d----~~G~i--------v~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 510 S----PNGKL--------IAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred C----CCCeE--------EEEEecccCHHHHHHHHHHHH
Confidence 3 23321 223557777888888887665
No 112
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=62.41 E-value=16 Score=40.17 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=44.8
Q ss_pred ceEEEEEeccccc--CcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHHHHHHHHh
Q 013733 25 IILMTRVDCALKI--NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 94 (437)
Q Consensus 25 ~V~~akVDCa~e~--N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~~i~k~ 94 (437)
.+++-++|-|.+. +.++-++|++-|-||+.+|+++ |+ +...+.|--+++.+++++++.
T Consensus 508 ~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~----g~--------e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 508 DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQ----GS--------EPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCC----CC--------cCcCCcceecHHHHHHHHHHh
Confidence 3788899999864 3678899999999999999644 21 122366888999999999775
No 113
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=61.63 E-value=11 Score=29.91 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=23.7
Q ss_pred hcCCChHHHHHHHHHHhcCCCCCCChhHHHHHHH-HhhhH
Q 013733 266 NFFVCEECRQHFYQMCSSVTSPFNKTRDFALWLW-STHNQ 304 (437)
Q Consensus 266 ~Ff~C~~C~~hF~~~~~~~~~~v~s~~~~vlWLW-~~HN~ 304 (437)
.-.||..||.|-.+.+.++...-++----+.+.+ +++|-
T Consensus 14 ~tLPC~~Cr~HA~~ai~kNNiMSs~DiNyIy~FFI~lfNn 53 (70)
T PF04805_consen 14 STLPCPECRIHAKEAIQKNNIMSSNDINYIYFFFISLFNN 53 (70)
T ss_pred hcCCCHHHHHHHHHHHHhcCccccCCccchHHHHHHHHHH
Confidence 4689999999999887765322122222344443 66664
No 114
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=59.83 E-value=6.9 Score=35.64 Aligned_cols=18 Identities=17% Similarity=0.554 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHhCCCc
Q 013733 353 WDQDEVFKFLTNYYGNTL 370 (437)
Q Consensus 353 w~~~~Vl~fL~~~Y~~~~ 370 (437)
.++++|.+|+++.||..-
T Consensus 74 ~s~~eI~~~~v~rYG~~V 91 (148)
T PF03918_consen 74 KSDEEIIDYFVERYGEFV 91 (148)
T ss_dssp --HHHHHHHHHHHHTTT-
T ss_pred CCHHHHHHHHHHhcCcce
Confidence 788999999999999863
No 115
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=59.37 E-value=9.2 Score=26.94 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=14.1
Q ss_pred HHHHHHHHHHH--hhhhHHHHHHHHHhhh
Q 013733 403 VGAALAIALAS--CAFGALACYWRSQQKN 429 (437)
Q Consensus 403 ~~~~~~i~~~~--~~~~~~~~~~~~~~~~ 429 (437)
|-++|.+.++- ..+-+-+||+|+++.+
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 44444444444 3444556887666543
No 116
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=57.89 E-value=18 Score=30.76 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=45.1
Q ss_pred hhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCC-CC
Q 013733 5 KPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-QT 83 (437)
Q Consensus 5 aP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~-Rt 83 (437)
.-+|.++|..+.. ...|+-.. +..+..++++. .|++.+|.|..+.+- .+ +....|.|. -+
T Consensus 35 ~~~F~~vA~~~Rd-------d~~F~~t~-----~~~~~~~~~~~-~~~vvl~rp~~~~~k-~e-----~~~~~~~~~~~~ 95 (107)
T cd03068 35 YQLYQDAANSLRE-------DYKFHHTF-----DSEIFKSLKVS-PGQLVVFQPEKFQSK-YE-----PKSHVLNKKDST 95 (107)
T ss_pred HHHHHHHHHhccc-------CCEEEEEC-----hHHHHHhcCCC-CCceEEECcHHHhhh-cC-----cceeeeeccccc
Confidence 4578899998865 35665433 24666778775 688889877755421 11 122457776 46
Q ss_pred HHH-HHHHHHH
Q 013733 84 ADG-LLTWINK 93 (437)
Q Consensus 84 ae~-Iv~~i~k 93 (437)
.++ |.+||.+
T Consensus 96 ~~~~~~~f~~~ 106 (107)
T cd03068 96 SEDELKDFFKE 106 (107)
T ss_pred hHHHHHHHHhc
Confidence 655 9999975
No 117
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=57.69 E-value=33 Score=28.44 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=43.3
Q ss_pred hhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCccccccccc-CCCCC
Q 013733 5 KPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRAL-EDWQT 83 (437)
Q Consensus 5 aP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y-~g~Rt 83 (437)
.-+|.++|..+.. ...|+-.. +.++...+++. .|++.+++.. .. ....| .|.-+
T Consensus 35 ~~~F~~vA~~~R~-------d~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~--~e----------~~~~y~~g~~~ 89 (102)
T cd03066 35 YKAFEEAAEEFHP-------YIKFFATF-----DSKVAKKLGLK-MNEVDFYEPF--ME----------EPVTIPDKPYS 89 (102)
T ss_pred HHHHHHHHHhhhc-------CCEEEEEC-----cHHHHHHcCCC-CCcEEEeCCC--CC----------CCcccCCCCCC
Confidence 3478999998865 35664333 24566777765 7999998531 11 12347 67789
Q ss_pred HHHHHHHHHHh
Q 013733 84 ADGLLTWINKQ 94 (437)
Q Consensus 84 ae~Iv~~i~k~ 94 (437)
.+.|.+||...
T Consensus 90 ~~~l~~fi~~~ 100 (102)
T cd03066 90 EEELVDFVEEH 100 (102)
T ss_pred HHHHHHHHHHh
Confidence 99999999653
No 118
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=55.65 E-value=16 Score=39.94 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCH
Q 013733 5 KPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTA 84 (437)
Q Consensus 5 aP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rta 84 (437)
-|.-.++++.+...+ | .|..--||.+.. +++..+|+|.+.|++.+ +|. ..+.|.-+.
T Consensus 491 Cp~~~~~~~~~~~~~---~-~i~~~~i~~~~~--~~~~~~~~v~~vP~~~i-------~~~----------~~~~G~~~~ 547 (555)
T TIGR03143 491 CPDVVLAAQRIASLN---P-NVEAEMIDVSHF--PDLKDEYGIMSVPAIVV-------DDQ----------QVYFGKKTI 547 (555)
T ss_pred cHHHHHHHHHHHHhC---C-CceEEEEECccc--HHHHHhCCceecCEEEE-------CCE----------EEEeeCCCH
Confidence 355556666665443 1 588888998876 99999999999999987 332 235577789
Q ss_pred HHHHHHH
Q 013733 85 DGLLTWI 91 (437)
Q Consensus 85 e~Iv~~i 91 (437)
++|++|+
T Consensus 548 ~~~~~~~ 554 (555)
T TIGR03143 548 EEMLELI 554 (555)
T ss_pred HHHHHhh
Confidence 9998886
No 119
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=54.08 E-value=26 Score=27.51 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=28.1
Q ss_pred eEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCC-CCCHHHHHHHHH
Q 013733 26 ILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALED-WQTADGLLTWIN 92 (437)
Q Consensus 26 V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g-~Rtae~Iv~~i~ 92 (437)
+.+--+|-.. ..++ .+|||.+.||+.+ +|. ..+.| .-+.+.|.+||+
T Consensus 29 i~~ei~~~~~--~~~~-~~ygv~~vPalvI-------ng~----------~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 29 IEVEIIDIED--FEEI-EKYGVMSVPALVI-------NGK----------VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEEEEEETTT--HHHH-HHTT-SSSSEEEE-------TTE----------EEEESS--HHHHHHHHHH
T ss_pred CeEEEEEccC--HHHH-HHcCCCCCCEEEE-------CCE----------EEEEecCCCHHHHHHHhC
Confidence 4444455432 2555 9999999999977 332 13456 567777777763
No 120
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=53.09 E-value=17 Score=33.19 Aligned_cols=46 Identities=9% Similarity=-0.130 Sum_probs=32.3
Q ss_pred cchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHHHHHHHHhcc
Q 013733 39 TNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 96 (437)
Q Consensus 39 ~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~~i~k~l~ 96 (437)
..+.+.|+|.++|+.+++- ++|.. +..+.|..+.+++.+++.+.+.
T Consensus 127 ~~~~~~~~v~~~P~~~~id----~~G~i--------~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 127 GKLGLDLGVYGAPETFLVD----GNGVI--------LYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CchHHhcCCeeCCeEEEEc----CCceE--------EEEEeccCCHHHHHHHHHHHhh
Confidence 6788899999999766652 23331 2234577889999999887763
No 121
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=53.06 E-value=33 Score=31.18 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=43.7
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEeccccc--------Ccchh-ccC---cccccceeeEcCCCcccCCCCCCC
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--------NTNLC-DKF---SVGHYPMLLWGSPSKFVAGSWEPN 69 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~--------N~~lC-~~f---~V~gYPTLklf~p~~~~~G~~~~~ 69 (437)
+...|.++++++.++- .|....+|-.... ...+. ..| +|.++||.+++- ++|..
T Consensus 66 r~e~P~L~~l~~~~~~-------~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID----~~G~~--- 131 (153)
T TIGR02738 66 HQFAPVLKRFSQQFGL-------PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN----VNTRK--- 131 (153)
T ss_pred HHHHHHHHHHHHHcCC-------cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe----CCCCE---
Confidence 4578999999987731 2444345532100 12232 345 889999999973 22221
Q ss_pred cccccccccCCCCCHHHHHHHHHHh
Q 013733 70 QEKKEIRALEDWQTADGLLTWINKQ 94 (437)
Q Consensus 70 ~~~~~i~~y~g~Rtae~Iv~~i~k~ 94 (437)
-...+.|..+.+.|.+.+.+-
T Consensus 132 ----i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 132 ----AYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred ----EEEEeecccCHHHHHHHHHHh
Confidence 011345778888887776653
No 122
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=51.43 E-value=12 Score=31.08 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=31.1
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceee
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 54 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLk 54 (437)
+...|.++++++.+.+. ...++..|...+...++++++++.+||++.
T Consensus 37 ~~~~p~l~~~~~~~~~~------~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 37 KKLLPVIRSIARAEADW------LDVVLASDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred HhHhHHHHHHHHHhcCC------cEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence 45679999998877542 122222344444457789999999999864
No 123
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=51.05 E-value=28 Score=34.74 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=31.6
Q ss_pred hhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCC
Q 013733 5 KPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 59 (437)
Q Consensus 5 aP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~ 59 (437)
--.+..+|..+. .|+|.+|.... ..++.+|.+...|||.+|..|
T Consensus 165 n~~L~~LA~kyp--------~vKFvkI~a~~---~~~~~~f~~~~LPtllvYk~G 208 (265)
T PF02114_consen 165 NSCLECLARKYP--------EVKFVKIRASK---CPASENFPDKNLPTLLVYKNG 208 (265)
T ss_dssp HHHHHHHHHH-T--------TSEEEEEEECG---CCTTTTS-TTC-SEEEEEETT
T ss_pred HHHHHHHHHhCC--------ceEEEEEehhc---cCcccCCcccCCCEEEEEECC
Confidence 346778888765 39999999654 247889999999999999544
No 124
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=49.92 E-value=26 Score=37.83 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=49.5
Q ss_pred hhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCH
Q 013733 5 KPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTA 84 (437)
Q Consensus 5 aP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rta 84 (437)
-|.--+++..++-.+ | .|..-.||...+ +++..+|+|.+.|++++ +|. ..+.|..+.
T Consensus 131 Cp~~v~~~~~~a~~~---~-~i~~~~id~~~~--~~~~~~~~v~~VP~~~i-------~~~----------~~~~g~~~~ 187 (517)
T PRK15317 131 CPDVVQALNLMAVLN---P-NITHTMIDGALF--QDEVEARNIMAVPTVFL-------NGE----------EFGQGRMTL 187 (517)
T ss_pred cHHHHHHHHHHHHhC---C-CceEEEEEchhC--HhHHHhcCCcccCEEEE-------CCc----------EEEecCCCH
Confidence 344445555555433 2 688999998876 99999999999999976 222 235677888
Q ss_pred HHHHHHHHHhcc
Q 013733 85 DGLLTWINKQTS 96 (437)
Q Consensus 85 e~Iv~~i~k~l~ 96 (437)
+.|++.+.+..+
T Consensus 188 ~~~~~~~~~~~~ 199 (517)
T PRK15317 188 EEILAKLDTGAA 199 (517)
T ss_pred HHHHHHHhcccc
Confidence 889888877654
No 125
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=49.12 E-value=3.1 Score=28.54 Aligned_cols=16 Identities=25% Similarity=0.968 Sum_probs=10.5
Q ss_pred CCCCCCCCCChhhhcc
Q 013733 325 KIIWPPKQLCSSCYRS 340 (437)
Q Consensus 325 k~q~P~~~~Cp~C~~~ 340 (437)
.++|||...||.|+..
T Consensus 19 ~~~~pPr~~Cp~C~s~ 34 (37)
T PF12172_consen 19 RVQFPPRPVCPHCGSD 34 (37)
T ss_dssp -EEES--SEETTTT--
T ss_pred CEecCCCcCCCCcCcc
Confidence 5899999999999753
No 126
>PF13728 TraF: F plasmid transfer operon protein
Probab=49.00 E-value=24 Score=33.98 Aligned_cols=70 Identities=14% Similarity=0.275 Sum_probs=46.8
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEeccc-------ccCcchhccCcccccceeeEcCCCcccCCCCCCCccccc
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------KINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKE 74 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~-------e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~ 74 (437)
+.++|+...+|+.++ . .|....+|-.. -.+.++..+++|..+|+++|..|+. +.+
T Consensus 136 ~~~~pil~~~~~~yg-~------~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~---~~~-------- 197 (215)
T PF13728_consen 136 QQQAPILQQFADKYG-F------SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT---KKW-------- 197 (215)
T ss_pred HHHHHHHHHHHHHhC-C------EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC---CeE--------
Confidence 468899999999884 2 36666666320 0247899999999999999985442 111
Q ss_pred ccccCCCCCHHHHHH
Q 013733 75 IRALEDWQTADGLLT 89 (437)
Q Consensus 75 i~~y~g~Rtae~Iv~ 89 (437)
..+-.|-.+.++|++
T Consensus 198 ~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 198 YPVSQGFMSLDELED 212 (215)
T ss_pred EEEeeecCCHHHHHH
Confidence 112247777777764
No 127
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.90 E-value=19 Score=33.43 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=17.0
Q ss_pred cchhccCcccccceeeEc
Q 013733 39 TNLCDKFSVGHYPMLLWG 56 (437)
Q Consensus 39 ~~lC~~f~V~gYPTLklf 56 (437)
.+|++.|+|+++||+.+|
T Consensus 105 ~ELa~kf~vrstPtfvFf 122 (182)
T COG2143 105 EELAQKFAVRSTPTFVFF 122 (182)
T ss_pred HHHHHHhccccCceEEEE
Confidence 589999999999999998
No 128
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=46.83 E-value=39 Score=30.07 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHhCCC
Q 013733 353 WDQDEVFKFLTNYYGNT 369 (437)
Q Consensus 353 w~~~~Vl~fL~~~Y~~~ 369 (437)
.+.++|..||++.||.-
T Consensus 74 ~sd~eI~~~~v~RYG~~ 90 (126)
T PRK10144 74 KSEVEIIGWMTERYGDF 90 (126)
T ss_pred CCHHHHHHHHHHhcCCe
Confidence 67899999999999985
No 129
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=44.38 E-value=15 Score=31.77 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=26.6
Q ss_pred CcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHHHHHH
Q 013733 38 NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 91 (437)
Q Consensus 38 N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~~i 91 (437)
+..++.+++|+|.||+.+- |. .+.|..+.+.|.+.|
T Consensus 118 ~~~~~~~~gi~gtPt~~v~-------g~-----------~~~G~~~~~~l~~~i 153 (154)
T cd03023 118 NRQLARALGITGTPAFIIG-------DT-----------VIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHHHcCCCcCCeEEEC-------CE-----------EecCCCCHHHHHHHh
Confidence 3677889999999998872 21 356777787777655
No 130
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=44.20 E-value=17 Score=31.89 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=28.2
Q ss_pred cchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHHHHHHHH
Q 013733 39 TNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 93 (437)
Q Consensus 39 ~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~~i~k 93 (437)
...+.+.+|++.||+.+ +|. .+.+..+.++|.++|++
T Consensus 126 ~~~~~~~~i~~tPt~~i-------nG~-----------~~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 126 SQLARQLGITGTPTFFI-------NGK-----------YVVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHT-SSSSEEEE-------TTC-----------EEETTTSHHHHHHHHHH
T ss_pred HHHHHHcCCccccEEEE-------CCE-----------EeCCCCCHHHHHHHHcC
Confidence 56788999999999987 443 23577899999998875
No 131
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=42.96 E-value=13 Score=34.57 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=27.1
Q ss_pred cCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHHHHHH
Q 013733 37 INTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 91 (437)
Q Consensus 37 ~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~~i 91 (437)
.|..+++++||++.||+.+ . +|. .+.|..+.+.|.+|+
T Consensus 160 ~~~~l~~~~gi~gtPtii~-~-----~G~-----------~~~G~~~~~~l~~~L 197 (197)
T cd03020 160 ANLALGRQLGVNGTPTIVL-A-----DGR-----------VVPGAPPAAQLEALL 197 (197)
T ss_pred HHHHHHHHcCCCcccEEEE-C-----CCe-----------EecCCCCHHHHHhhC
Confidence 4589999999999999974 2 332 234666677776653
No 132
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=42.71 E-value=31 Score=26.78 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=37.3
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCc--ccccceeeEc
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS--VGHYPMLLWG 56 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~--V~gYPTLklf 56 (437)
+.+.|.++++++.+.. .+.+..||... .+..+...|+ +..+|++.++
T Consensus 48 ~~~~~~l~~~~~~~~~-------~~~~~~i~~~~-~~~~~~~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 48 RAEAPLLEELAEEYGG-------DVEVVAVNVDD-ENPDLAAEFGVAVRSIPTLLLF 96 (127)
T ss_pred HhhchhHHHHHHHhcC-------CcEEEEEECCC-CChHHHHHHhhhhccCCeEEEE
Confidence 3568999999998875 37788888761 2378999999 9999999876
No 133
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=41.82 E-value=26 Score=25.15 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=16.9
Q ss_pred HHHHHhhhhHHHHHHHHHhhhcC
Q 013733 409 IALASCAFGALACYWRSQQKNRK 431 (437)
Q Consensus 409 i~~~~~~~~~~~~~~~~~~~~~~ 431 (437)
+.++.|++-++..| |+-|.|++
T Consensus 17 Vglv~i~iva~~iY-RKw~aRkr 38 (43)
T PF08114_consen 17 VGLVGIGIVALFIY-RKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHH
Confidence 57788888888888 77776654
No 134
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=41.50 E-value=29 Score=25.68 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=23.4
Q ss_pred eEEEEEecccccC--cchhccCcccccceeeEc
Q 013733 26 ILMTRVDCALKIN--TNLCDKFSVGHYPMLLWG 56 (437)
Q Consensus 26 V~~akVDCa~e~N--~~lC~~f~V~gYPTLklf 56 (437)
+.+..||...+.. .++++.+++.++||+.++
T Consensus 25 i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~ 57 (74)
T TIGR02196 25 IAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG 57 (74)
T ss_pred CeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC
Confidence 7888899876411 236678999999999874
No 135
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=40.74 E-value=29 Score=33.21 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=36.4
Q ss_pred hhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCC
Q 013733 5 KPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 59 (437)
Q Consensus 5 aP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~ 59 (437)
--+++.+|+..-+ .+|.+||...- +=|+.+.+|...|||.+|..|
T Consensus 103 DkhLe~LAk~h~e--------TrFikvnae~~--PFlv~kL~IkVLP~v~l~k~g 147 (211)
T KOG1672|consen 103 DKHLEILAKRHVE--------TRFIKVNAEKA--PFLVTKLNIKVLPTVALFKNG 147 (211)
T ss_pred HHHHHHHHHhccc--------ceEEEEecccC--ceeeeeeeeeEeeeEEEEEcC
Confidence 3467788876543 78999997764 899999999999999998544
No 136
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=39.10 E-value=36 Score=34.26 Aligned_cols=41 Identities=10% Similarity=-0.044 Sum_probs=25.7
Q ss_pred cccceeeeHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCCC
Q 013733 395 STNAVVVPVGAALAIALASCAFGALACYWRSQQKNRKPRRS 435 (437)
Q Consensus 395 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (437)
-..+.||-|+.|+|+++..++..+-+..-|.+.|+.+|...
T Consensus 224 l~~G~VVlIslAiALG~v~ll~l~Gii~~~~~r~~~~~~~~ 264 (281)
T PF12768_consen 224 LSRGFVVLISLAIALGTVFLLVLIGIILAYIRRRRQGYVPA 264 (281)
T ss_pred ccceEEEEEehHHHHHHHHHHHHHHHHHHHHHhhhccCcCC
Confidence 34678999999988877654332222222567777777643
No 137
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=39.01 E-value=56 Score=29.07 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHhCCC
Q 013733 353 WDQDEVFKFLTNYYGNT 369 (437)
Q Consensus 353 w~~~~Vl~fL~~~Y~~~ 369 (437)
.++++|.+|+++.||.-
T Consensus 74 ~Sd~eI~~~~v~RYG~~ 90 (126)
T TIGR03147 74 KSNQQIIDFMTARFGDF 90 (126)
T ss_pred CCHHHHHHHHHHhcCCe
Confidence 77899999999999986
No 138
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=38.72 E-value=67 Score=30.29 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=47.5
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEeccc---------ccCcchhccCcc--cccceeeEcCCCcccCCCCCCCc
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------KINTNLCDKFSV--GHYPMLLWGSPSKFVAGSWEPNQ 70 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~---------e~N~~lC~~f~V--~gYPTLklf~p~~~~~G~~~~~~ 70 (437)
+++.|..+++++.++- .|....+|-.. .....+...|++ .++||.+++- ++|..
T Consensus 85 ~~e~P~L~~l~~~~g~-------~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId----~~G~i---- 149 (181)
T PRK13728 85 HQFDPVLKQLAQQYGF-------SVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVN----VNTLE---- 149 (181)
T ss_pred HHHHHHHHHHHHHcCC-------EEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEe----CCCcE----
Confidence 4678999999988741 23333344210 011336668885 6999999972 23321
Q ss_pred ccccccccCCCCCHHHHHHHHHHhcc
Q 013733 71 EKKEIRALEDWQTADGLLTWINKQTS 96 (437)
Q Consensus 71 ~~~~i~~y~g~Rtae~Iv~~i~k~l~ 96 (437)
-...+.|..+.++|.+.|.+.+.
T Consensus 150 ---~~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 150 ---ALPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred ---EEEEEECCCCHHHHHHHHHHHHh
Confidence 01245688999999888877764
No 139
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=37.63 E-value=34 Score=22.84 Aligned_cols=18 Identities=56% Similarity=0.816 Sum_probs=8.3
Q ss_pred eeHHHHHHHHHHHhhhhHHHH
Q 013733 401 VPVGAALAIALASCAFGALAC 421 (437)
Q Consensus 401 ~~~~~~~~i~~~~~~~~~~~~ 421 (437)
|+|+..+ |++| +.|+|.|
T Consensus 13 vti~vil-iava--alg~lic 30 (33)
T PF09049_consen 13 VTIIVIL-IAVA--ALGALIC 30 (33)
T ss_dssp HHHHHHH-HHHH--HHHHHHH
T ss_pred EEehhHH-HHHH--HHhhhhe
Confidence 4554433 4444 4455544
No 140
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=36.49 E-value=18 Score=32.13 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=15.3
Q ss_pred HHHHHHHhhhhHHH---HHHHHHhhhcCCCC
Q 013733 407 LAIALASCAFGALA---CYWRSQQKNRKPRR 434 (437)
Q Consensus 407 ~~i~~~~~~~~~~~---~~~~~~~~~~~~~~ 434 (437)
++.++.|.|+.+|+ +||+.++||||-+|
T Consensus 83 ~G~vlLs~GLmlL~~~alcW~~~~rkK~~kr 113 (129)
T PF15099_consen 83 FGPVLLSLGLMLLACSALCWKPIIRKKKKKR 113 (129)
T ss_pred ehHHHHHHHHHHHHhhhheehhhhHhHHHHh
Confidence 34445555554443 46877766665433
No 141
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=34.13 E-value=68 Score=34.62 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=48.5
Q ss_pred hhHHHHHHHHhCCCCCCCCcceEEEEEecccccCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCH
Q 013733 5 KPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTA 84 (437)
Q Consensus 5 aP~fekaA~~l~~~~~~~~~~V~~akVDCa~e~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rta 84 (437)
-|.=-+++..+.-.+ | .|..-.||...+ +++..+|+|.+.|++.+ +|. ..+.|..+.
T Consensus 132 Cp~~v~~~~~~a~~~---p-~i~~~~id~~~~--~~~~~~~~v~~VP~~~i-------~~~----------~~~~g~~~~ 188 (515)
T TIGR03140 132 CPDVVQALNQMALLN---P-NISHTMIDGALF--QDEVEALGIQGVPAVFL-------NGE----------EFHNGRMDL 188 (515)
T ss_pred CHHHHHHHHHHHHhC---C-CceEEEEEchhC--HHHHHhcCCcccCEEEE-------CCc----------EEEecCCCH
Confidence 344445555555443 2 588888998876 99999999999999986 221 135577778
Q ss_pred HHHHHHHHHhccc
Q 013733 85 DGLLTWINKQTSR 97 (437)
Q Consensus 85 e~Iv~~i~k~l~~ 97 (437)
+.+++.+.+..+.
T Consensus 189 ~~~~~~l~~~~~~ 201 (515)
T TIGR03140 189 AELLEKLEETAGV 201 (515)
T ss_pred HHHHHHHhhccCc
Confidence 8887777665443
No 142
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=33.67 E-value=65 Score=27.81 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCC
Q 013733 405 AALAIALASCAFGALACYWRSQQKNRKP 432 (437)
Q Consensus 405 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 432 (437)
+.+|++|.-+.+.-|.+|.+++++++.+
T Consensus 5 ~il~llLll~l~asl~~wr~~~rq~k~~ 32 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMKQRQKKAG 32 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4455554444443455554444444433
No 143
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=32.60 E-value=36 Score=30.52 Aligned_cols=25 Identities=20% Similarity=0.073 Sum_probs=13.7
Q ss_pred HHHHhhhhHHHHHHHHHhhhcCCCC
Q 013733 410 ALASCAFGALACYWRSQQKNRKPRR 434 (437)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (437)
++.-++++.++++++.+.++++|||
T Consensus 28 ~lll~~~~~~~~~~~r~~~~~~yrr 52 (146)
T PF14316_consen 28 ALLLLLLILLLWRLWRRWRRNRYRR 52 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHH
Confidence 3333344455555555666667875
No 144
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=32.48 E-value=40 Score=26.91 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=17.0
Q ss_pred eeeeHHHHHHHHHHHhhhhHH
Q 013733 399 VVVPVGAALAIALASCAFGAL 419 (437)
Q Consensus 399 ~~~~~~~~~~i~~~~~~~~~~ 419 (437)
-++|+.+++|++++.|++-++
T Consensus 5 el~PL~~~vg~a~~~a~~~~~ 25 (73)
T PF06522_consen 5 ELYPLFVIVGVAVGGATFYLY 25 (73)
T ss_pred cccchHHHHHHHHHHHHHHHH
Confidence 479999999999988887443
No 145
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=29.88 E-value=32 Score=33.81 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=30.7
Q ss_pred cCcchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHHHHHHH
Q 013733 37 INTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 92 (437)
Q Consensus 37 ~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~~i~ 92 (437)
.|.++..++||+|.||+.+-. .+|. +..+.|..+++.|.+++.
T Consensus 207 ~n~~l~~~lGv~GTPaiv~~d----~~G~---------~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 207 DNQKLMDDLGANATPAIYYMD----KDGT---------LQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHHHHcCCCCCCEEEEEC----CCCC---------EEEecCCCCHHHHHHHhC
Confidence 467899999999999998731 1122 234568788888877764
No 146
>PF15284 PAGK: Phage-encoded virulence factor
Probab=28.49 E-value=75 Score=24.73 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Q 013733 403 VGAALAIALASCAFGALACYWRSQQKNRKPR 433 (437)
Q Consensus 403 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 433 (437)
|-+++.++|.+.+|.+++.- +.++.+|+.-
T Consensus 7 ifL~l~~~LsA~~FSasamA-a~~~~~~~~~ 36 (61)
T PF15284_consen 7 IFLALVFILSAAGFSASAMA-ADSSPHRKPA 36 (61)
T ss_pred HHHHHHHHHHHhhhhHHHHH-HhhCCCCCCc
Confidence 56788899999999999988 7888877653
No 147
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=28.23 E-value=56 Score=27.06 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHh
Q 013733 404 GAALAIALASCAFGALACYWRSQQ 427 (437)
Q Consensus 404 ~~~~~i~~~~~~~~~~~~~~~~~~ 427 (437)
+-+++++|++...|.+.||-|.+-
T Consensus 22 ~gga~llL~~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 22 MGGALLLLVAVCLGVVLYCHRFHW 45 (87)
T ss_pred hccHHHHHHHHHHHHHHhhhhhcc
Confidence 445557788888888888877765
No 148
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=26.52 E-value=83 Score=26.70 Aligned_cols=48 Identities=8% Similarity=0.114 Sum_probs=29.4
Q ss_pred cchhHHHHHHHHhCCCCCCCCcceEEEEEeccc-------------------------ccCcchhccCcccccceeeEc
Q 013733 3 NYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KINTNLCDKFSVGHYPMLLWG 56 (437)
Q Consensus 3 ~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~-------------------------e~N~~lC~~f~V~gYPTLklf 56 (437)
+..|.++++.+.++.. .+.+..|+... ..+..+.+.|+|.++|+.+++
T Consensus 40 ~~~p~l~~l~~~~~~~------~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vi 112 (126)
T cd03012 40 HTLPYLTDLEQKYKDD------GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPALYLI 112 (126)
T ss_pred HHHHHHHHHHHHcCcC------CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCCCcCCeEEEE
Confidence 3467788888877753 25555564410 012346667888888888776
No 149
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=25.25 E-value=77 Score=29.22 Aligned_cols=45 Identities=11% Similarity=-0.211 Sum_probs=29.1
Q ss_pred cchhccCcccccceeeEcCCCcccCCCCCCCcccccccccCCCCCHHHHHHHHHHhc
Q 013733 39 TNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 95 (437)
Q Consensus 39 ~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~g~Rtae~Iv~~i~k~l 95 (437)
..+...|+|.++|+.+++- ++|.. ...+.|..+.+.+-++|...+
T Consensus 132 ~~~~~~~gv~~~P~t~vid----~~G~i--------~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 132 GMLGLDLGVYGAPETFLID----GNGII--------RYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred ccHHHhcCCCcCCeEEEEC----CCceE--------EEEEecCCCHHHHHHHHHHHH
Confidence 4567789999999877762 23321 123457777777777776554
No 150
>PF05214 Baculo_p33: Baculovirus P33; InterPro: IPR007879 This family consists of a series of baculoviral 33 kDa early protein homologues.; PDB: 3QZY_B 3P0K_A.
Probab=24.02 E-value=62 Score=31.98 Aligned_cols=43 Identities=33% Similarity=0.714 Sum_probs=26.6
Q ss_pred HHHHHHHHhcccCC---CC---C-HH---HHHHHHHHHHh-c--CCChHHHHHHHH
Q 013733 237 LWVLLHSLSVRIDD---GE---S-QF---TFTAVCDFIHN-F--FVCEECRQHFYQ 279 (437)
Q Consensus 237 lW~LfH~ltv~~~~---~~---~-~~---~~~~i~~fv~~-F--f~C~~C~~hF~~ 279 (437)
.|=..|.|+.-..| +- + .. .++.|+-.+.+ | ..|.-||+|+..
T Consensus 108 IWD~IH~l~li~DdmV~nR~~~~~d~v~~~l~n~K~lfYNiF~~L~C~mC~~HYl~ 163 (250)
T PF05214_consen 108 IWDSIHFLCLIIDDMVDNRHKLSYDFVSNQLKNMKWLFYNIFFKLFCPMCRDHYLT 163 (250)
T ss_dssp HHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHT---SSS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhHhheeCChHHhHHHee
Confidence 69999999986653 11 1 12 23444444444 3 599999999964
No 151
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=23.84 E-value=92 Score=24.69 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=28.6
Q ss_pred cchhHHHHHHHHhCCCCCCCCcceEEEEEecccc-----------------------cCcchhccCcccccceeeEc
Q 013733 3 NYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-----------------------INTNLCDKFSVGHYPMLLWG 56 (437)
Q Consensus 3 ~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e-----------------------~N~~lC~~f~V~gYPTLklf 56 (437)
.+.|...++.+.+++. ..|.|..|.++.. .+..+.+.|+|.++|++.+.
T Consensus 18 ~~~~~l~~l~~~~~~~-----~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~ll 89 (95)
T PF13905_consen 18 KELPKLKELYKKYKKK-----DDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIPTLVLL 89 (95)
T ss_dssp HHHHHHHHHHHHHTTT-----TTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSSEEEEE
T ss_pred HHHHHHHHHHHHhCCC-----CCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCCEEEEE
Confidence 3456666666666631 1455555655532 12456777888888888876
No 152
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.36 E-value=69 Score=30.83 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=29.5
Q ss_pred cchhccCcccccceeeEcCCCcccCCCCCCCcccccccccC-C--CCCHHHHHHHHHHhc
Q 013733 39 TNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALE-D--WQTADGLLTWINKQT 95 (437)
Q Consensus 39 ~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~i~~y~-g--~Rtae~Iv~~i~k~l 95 (437)
.-+|++.++.||||+.+=. +|.+ ..+. | -.+.+.++.++.+++
T Consensus 164 r~l~~rlg~~GfPTl~le~-----ng~~---------~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALER-----NGTM---------YVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeee-----CCce---------EeccCCcccCCcHHHHHHHHHHH
Confidence 5689999999999998842 3322 1221 3 256788888887765
No 153
>PRK10561 glycerol-3-phosphate transporter permease; Provisional
Probab=22.51 E-value=1e+02 Score=30.06 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=24.4
Q ss_pred eeHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Q 013733 401 VPVGAALAIALASCAFGALACYWRSQQKNRKP 432 (437)
Q Consensus 401 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 432 (437)
.+.+||+|+.+....+.++..+.|...|+++|
T Consensus 248 ~~~aaa~a~il~~~~~~~~~~~~~~~~~~~~~ 279 (280)
T PRK10561 248 LSSSAAQSVVLMFLVIVLTVVQFRYVESKVRY 279 (280)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 56788888888887877777776777676665
No 154
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=22.28 E-value=99 Score=23.55 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=17.4
Q ss_pred eeHHHHHHHHHHHhhhhHHHHHH
Q 013733 401 VPVGAALAIALASCAFGALACYW 423 (437)
Q Consensus 401 ~~~~~~~~i~~~~~~~~~~~~~~ 423 (437)
.-||+||++++ |.+|.+|-.|-
T Consensus 23 a~IGtalGvai-sAgFLaLKicm 44 (61)
T PF14986_consen 23 AIIGTALGVAI-SAGFLALKICM 44 (61)
T ss_pred eeehhHHHHHH-HHHHHHHHHHH
Confidence 56899999987 67888887773
No 155
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=22.12 E-value=1.9e+02 Score=28.81 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=49.0
Q ss_pred CcchhHHHHHHHHhCCCCCCCCcceEEEEEecccc-------cCcchhccCcccccceeeEcCCCcccCCCCCCCccccc
Q 013733 2 RNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-------INTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKE 74 (437)
Q Consensus 2 k~faP~fekaA~~l~~~~~~~~~~V~~akVDCa~e-------~N~~lC~~f~V~gYPTLklf~p~~~~~G~~~~~~~~~~ 74 (437)
+.|+|+-...|+.+.= .|....||-... .+..+..+++|..+|+++|..++. +..
T Consensus 166 ~~~apil~~fa~~ygi-------~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t---~~~-------- 227 (256)
T TIGR02739 166 QKMAPVIQAFAKEYGI-------SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS---QKM-------- 227 (256)
T ss_pred HHHHHHHHHHHHHhCC-------eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC---CcE--------
Confidence 4688999999988752 355556664421 125688999999999999975431 111
Q ss_pred ccccCCCCCHHHHHHHHHHh
Q 013733 75 IRALEDWQTADGLLTWINKQ 94 (437)
Q Consensus 75 i~~y~g~Rtae~Iv~~i~k~ 94 (437)
..+-.|--+.++|++=|...
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNV 247 (256)
T ss_pred EEEeeccCCHHHHHHHHHHH
Confidence 11223778888887765443
No 156
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=21.31 E-value=44 Score=30.89 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=15.9
Q ss_pred cchhccCcccccceeeEcC
Q 013733 39 TNLCDKFSVGHYPMLLWGS 57 (437)
Q Consensus 39 ~~lC~~f~V~gYPTLklf~ 57 (437)
..++++.+|+++||+.+|.
T Consensus 137 ~~la~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 137 QQLAREMGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHHTT-SSSSEEEEE-
T ss_pred HHHHHHcCCCCCCEEEEEe
Confidence 6789999999999999983
No 157
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=20.79 E-value=1.1e+02 Score=27.38 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhhcCCCC
Q 013733 406 ALAIALASCAFGALACYWRSQQKNRKPRR 434 (437)
Q Consensus 406 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (437)
++|+.++..+.......+|..||+|+.+|
T Consensus 126 i~~~v~~~i~Y~l~~~~~~~~r~~r~~~r 154 (154)
T PF09835_consen 126 ILGIVLGIISYFLVYFLVRKYRKRRRKRR 154 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34444444444444444566666665544
Done!