Query 013736
Match_columns 437
No_of_seqs 219 out of 1801
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:10:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qfz_A TBC1 domain family memb 100.0 7.7E-52 2.6E-56 412.6 28.0 289 42-422 25-341 (345)
2 1fkm_A Protein (GYP1P), ORF YO 100.0 1.4E-51 4.7E-56 417.0 27.1 330 43-423 8-388 (396)
3 2qq8_A TBC1 domain family memb 100.0 2.1E-49 7.2E-54 393.0 23.9 285 43-414 21-309 (334)
4 3qye_A TBC1 domain family memb 100.0 7.4E-49 2.5E-53 389.0 16.2 269 42-414 29-308 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 3.3E-47 1.1E-51 373.8 20.3 258 43-413 5-274 (310)
6 4hl4_A TBC1 domain family memb 100.0 9.1E-47 3.1E-51 367.5 21.3 263 44-418 21-290 (292)
7 3qwl_A TBC1 domain family memb 100.0 1.1E-39 3.9E-44 315.6 24.2 252 45-420 28-289 (294)
8 2kvs_A Uncharacterized protein 25.4 55 0.0019 24.3 3.1 35 384-418 39-73 (80)
9 2js3_A Uncharacterized protein 15.3 49 0.0017 24.3 0.9 11 209-219 17-27 (96)
10 3i5g_C Myosin catalytic light 14.7 1.6E+02 0.0056 24.0 4.3 19 53-71 99-117 (159)
No 1
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=7.7e-52 Score=412.63 Aligned_cols=289 Identities=22% Similarity=0.414 Sum_probs=248.1
Q ss_pred cHHHHHHhhccCCCccHHHHHHHHHhCCCCCCcHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 013736 42 SARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG 121 (437)
Q Consensus 42 ~~~~W~~~l~~~~~i~~~kl~k~l~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 121 (437)
..++|.+++.+. .+|.++ ++.++++|||+.+|+.||++++|++|.+. ++|....+++++.|.++++++.....
T Consensus 25 r~~kw~~~l~~~-~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~--- 97 (345)
T 2qfz_A 25 RLDKFKQLLAGP-NTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRN--- 97 (345)
T ss_dssp HHHHHHHHHHCS-BCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHcCC-CCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCC---
Confidence 457999999764 478888 56677899999999999999999998876 46678888899999999998643100
Q ss_pred CCccccccccccCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhcccccCCCCcCCCChhhHHHHHHHHHHH
Q 013736 122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIY 201 (437)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~~IL~~y 201 (437)
++ ...+..+||++||.||+|+ ++|+.+.+++.|.|||.+|
T Consensus 98 ------------------------------------~~---~~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~~y 137 (345)
T 2qfz_A 98 ------------------------------------DE---VHQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILFIW 137 (345)
T ss_dssp ------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHHHH
T ss_pred ------------------------------------cc---chHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHHHH
Confidence 00 0114578999999999999 9999999999999999999
Q ss_pred hHhcCCCcccCChhhHHHHHHHhcc------------------------CHHHHHHHHHHHHhhcccCcccCCchhhHHH
Q 013736 202 SWVDNDIGYVQGMNDICSPMIVLLE------------------------NEADAFWCFEHTMRRLRENFRTNTGMIGVQS 257 (437)
Q Consensus 202 ~~~~p~igY~QGm~~Iaa~ll~~~~------------------------~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~ 257 (437)
+.+||++|||||||+|||+|++++. +|++|||||+++|+++.+.|. .+++|+..
T Consensus 138 a~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~--~~~~~i~~ 215 (345)
T 2qfz_A 138 AIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYT--FAQPGIQM 215 (345)
T ss_dssp HHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSS--TTCHHHHH
T ss_pred HHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccc--cCcHHHHH
Confidence 9999999999999999999998874 399999999999999877765 35679999
Q ss_pred HHHHHHHHHHHHCHHHHHHHHhCCCCccchhhhHHHHhccccCChhhHHHHHHHHhcccCCCCchhhhcccCCCCCCCcc
Q 013736 258 QLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQV 337 (437)
Q Consensus 258 ~~~~l~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~vlriWD~~l~~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
.+..++.+|+.++|+||+||.+.++++.+|+++||+|||++++|++.++||||.+|++|...
T Consensus 216 ~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~------------------ 277 (345)
T 2qfz_A 216 KVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF------------------ 277 (345)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCCh------------------
Confidence 99999999999999999999999999999999999999999999999999999999987542
Q ss_pred chhhhhhhchhhhhccccCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCC----CHHHHHHHHHHH
Q 013736 338 NDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNL----DAKKACNEALKI 413 (437)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ail~~~~~~ll~~~~~~~~i~~~l~~l~~~~----d~~~ll~~A~~l 413 (437)
..|++|+|+|+|...+++||+ ..|+++++++|+++|... |++.+++.|..+
T Consensus 278 ------------------------~~~~~~v~~AiL~~~~~~ll~-~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l 332 (345)
T 2qfz_A 278 ------------------------SHFHLYVCAAFLVRWRKEILE-EKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRL 332 (345)
T ss_dssp ------------------------TTHHHHHHHHHHHHTHHHHHH-CCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHH
Confidence 126889999999999999998 579999999999999763 799999999999
Q ss_pred HHHHHhhhh
Q 013736 414 QKKYLSKVL 422 (437)
Q Consensus 414 ~~~~~~~~~ 422 (437)
+.+|.....
T Consensus 333 ~~~~~~~~~ 341 (345)
T 2qfz_A 333 KFAFADAPN 341 (345)
T ss_dssp HHHC-----
T ss_pred HHHHHhhHh
Confidence 998866543
No 2
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=1.4e-51 Score=417.04 Aligned_cols=330 Identities=22% Similarity=0.386 Sum_probs=251.7
Q ss_pred HHHHHHhhccCCCccHHHHHHHHHhCCCCCCcHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCC
Q 013736 43 ARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGS 122 (437)
Q Consensus 43 ~~~W~~~l~~~~~i~~~kl~k~l~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~ 122 (437)
.++|.+++.+.+.+|.++ ++.++++|||+.+|+.||++++|++|.+.+ +|...++++++.|.++++++..-.
T Consensus 8 ~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~----- 79 (396)
T 1fkm_A 8 ISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQ----- 79 (396)
T ss_dssp HHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSS-----
T ss_pred HHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhcc-----
Confidence 469999998876689988 666788899999999999999999998774 567888899999999999863200
Q ss_pred CccccccccccCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhcccccCCCCcCCCChhhHHHHHHHHHHHh
Q 013736 123 GKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYS 202 (437)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~~IL~~y~ 202 (437)
+ ..+ .+..+||++||.||+|++++|+.+.+++.|.|||.+|+
T Consensus 80 -----------------~---------------~~~------~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rIL~aya 121 (396)
T 1fkm_A 80 -----------------H---------------SRD------IPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWA 121 (396)
T ss_dssp -----------------C---------------STH------HHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHH
T ss_pred -----------------C---------------ccc------HHHHHHHHHHhhhhCCCcccccCchHHHHHHHHHHHHH
Confidence 0 001 14578999999999999999999999999999999999
Q ss_pred HhcCCCcccCChhhHHHHHHHhcc---------------------C-------HHHHHHHHHHHHhhcccCcccCCchhh
Q 013736 203 WVDNDIGYVQGMNDICSPMIVLLE---------------------N-------EADAFWCFEHTMRRLRENFRTNTGMIG 254 (437)
Q Consensus 203 ~~~p~igY~QGm~~Iaa~ll~~~~---------------------~-------E~~aF~~f~~l~~~~~~~~~~~~~~~~ 254 (437)
.+||++|||||||+|||+|++++. + |++|||||++||+++..+|.. +++|
T Consensus 122 ~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~--~~~~ 199 (396)
T 1fkm_A 122 IRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH--GQPG 199 (396)
T ss_dssp HHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSST--TCHH
T ss_pred HHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cHHH
Confidence 999999999999999999998752 2 999999999999998777753 5679
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchhhhHHHHhccccCChhhHHHHHHHHhcccCCCCchhhhcccCCCCCC
Q 013736 255 VQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDG 334 (437)
Q Consensus 255 ~~~~~~~l~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~vlriWD~~l~~~~~~~~~~~~~~~~~~~~~ 334 (437)
+...+..++.+|+.++|+||+||.+.++++.+|+++||+|||+++||++.++||||.+|++|..... +.+....+..+.
T Consensus 200 i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~-~~~~~~~~~~~~ 278 (396)
T 1fkm_A 200 ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVT-SSYSMSSNDIKP 278 (396)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCcccc-chhhhhcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999998821100 000000000111
Q ss_pred Cccchhhh---hhhc--hhh---------hhccccCCC----C-CCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHh
Q 013736 335 RQVNDKQL---KQCG--KFE---------RKNVKTGLP----D-KTSALSVFLVASVLETKNKKLLREAKGLDDVVKILA 395 (437)
Q Consensus 335 ~~~~~~~~---~~~~--~~~---------~~~~~~~~~----~-~~~~~~l~~~~ail~~~~~~ll~~~~~~~~i~~~l~ 395 (437)
+..+.+.. .+.| .+. ..+++.+.+ + +...|++|+|+|+|...|+.||+ .|+++++++|+
T Consensus 279 p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~--~df~~~l~~L~ 356 (396)
T 1fkm_A 279 PVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLME--MDFQETITFLQ 356 (396)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHHHTHHHHTT--CCHHHHHHHHT
T ss_pred CccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHh
Confidence 11111110 1111 000 001101000 0 12478999999999999999997 49999999999
Q ss_pred hhcCC----CCHHHHHHHHHHHHHHHHhhhhh
Q 013736 396 DITGN----LDAKKACNEALKIQKKYLSKVLF 423 (437)
Q Consensus 396 ~l~~~----~d~~~ll~~A~~l~~~~~~~~~~ 423 (437)
++|.. .|++.++++|..++..|.+....
T Consensus 357 ~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~~ 388 (396)
T 1fkm_A 357 NPPTKDWTETDIEMLLSEAFIWQSLYKDATSH 388 (396)
T ss_dssp SCSCTTCCHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCCCCcccccHHHHHHHHHHHHHHHhccHHH
Confidence 99964 48999999999999888766544
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-49 Score=392.97 Aligned_cols=285 Identities=20% Similarity=0.305 Sum_probs=228.6
Q ss_pred HHHHH-HhhccCCC-ccHHHHHHHHHhCCCCCCcHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 013736 43 ARRWH-AAFSEDGH-LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPII 120 (437)
Q Consensus 43 ~~~W~-~~l~~~~~-i~~~kl~k~l~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~ 120 (437)
..+|. +++.+.+. .+.++ ++.++++|||+.+|+.||++++|+. ...+.+.+....++.++.|..+........
T Consensus 21 ~~~W~~~il~~w~~~~~~~~-lr~l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~--- 95 (334)
T 2qq8_A 21 VLTWNNEILPNWETMWCSRK-VRDLWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEVE--- 95 (334)
T ss_dssp HHHHHHTTGGGCC--CCCHH-HHHHHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHhHHhccChHH-HHHHHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccCc---
Confidence 46898 57766444 46666 7778899999999999999999985 345556666666666666655433221000
Q ss_pred CCCccccccccccCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhcccccCCCCcCCCCh-hhHHHHHHHHH
Q 013736 121 GSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE-TNQAKLWDVLA 199 (437)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~-~~~~~L~~IL~ 199 (437)
.++ .|.. .....+..+||++||.||+|++++|+.+ .+++.|.|||.
T Consensus 96 -----------~~d-----~~~~-----------------~~~~~~~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~ 142 (334)
T 2qq8_A 96 -----------NED-----AGFS-----------------AADREASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILG 142 (334)
T ss_dssp --------------------------------------------CCHHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHH
T ss_pred -----------ccc-----cccc-----------------cccchhHHHHHHHHHhhcCCCchhhcCCCchHHHHHHHHH
Confidence 000 0000 0001135789999999999999999875 67999999999
Q ss_pred HHhHhcCCCcccCChhhHHHHHHHhccCHHHHHHHHHHHHhhccc-CcccCCchhhHHHHHHHHHHHHHHHCHHHHHHHH
Q 013736 200 IYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRE-NFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLE 278 (437)
Q Consensus 200 ~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~lL~~~~P~L~~hL~ 278 (437)
+|+.+||++|||||||+|||+|++++ +|++|||||+++|++... .|+ ..+.+++...+..++.+|+..+|+||+||.
T Consensus 143 aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~ 220 (334)
T 2qq8_A 143 AYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFF-RVDHGLMLTYFAAFEVFFEENLPKLFAHFK 220 (334)
T ss_dssp HHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHH-SSCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhcc-CCChHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 99999999999999999999988776 899999999999998632 233 345668999999999999999999999999
Q ss_pred hCCCCccchhhhHHHHhccccCChhhHHHHHHHHhcccCCCCchhhhcccCCCCCCCccchhhhhhhchhhhhccccCCC
Q 013736 279 DLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLP 358 (437)
Q Consensus 279 ~~~i~~~~~~~~WfltlF~~~lp~~~vlriWD~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (437)
+.++++.+|+++||+|+|++++|++.++||||++|++|.
T Consensus 221 ~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~----------------------------------------- 259 (334)
T 2qq8_A 221 KNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE----------------------------------------- 259 (334)
T ss_dssp HTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH-----------------------------------------
T ss_pred HcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC-----------------------------------------
Confidence 999999999999999999999999999999999999864
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 013736 359 DKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQ 414 (437)
Q Consensus 359 ~~~~~~~l~~~~ail~~~~~~ll~~~~~~~~i~~~l~~l~~~~d~~~ll~~A~~l~ 414 (437)
.+++++|+|+|..+++.|++. ++++++++|+++|..+|++.++..|..+.
T Consensus 260 ----~~l~~valaiL~~~~~~Ll~~--d~~~il~~L~~lp~~~d~~~l~~~a~~l~ 309 (334)
T 2qq8_A 260 ----EFLFRTALGILKLFEDILTKM--DFIHMAQFLTRLPEDLPAEELFASIATIQ 309 (334)
T ss_dssp ----HHHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHSCCTTCCHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHhCCCcCCHHHHHHHHHHcc
Confidence 368899999999999999984 89999999999999999999999999875
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=7.4e-49 Score=388.95 Aligned_cols=269 Identities=21% Similarity=0.422 Sum_probs=223.8
Q ss_pred cHHHHHHhhccCCC----ccHHHHHHHHHhCCCCCCcHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 013736 42 SARRWHAAFSEDGH----LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIV 117 (437)
Q Consensus 42 ~~~~W~~~l~~~~~----i~~~kl~k~l~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~ 117 (437)
+.++|.+++.+.|+ .+.++ ++.++++|||+.+|+.||+.++|+.+...+.. ......+..|.++.++..
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~-l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~---~~~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEK-MHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFP---SKQQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHH-HHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCC---SSSCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHH-HHHHHHcCCCHHHHHHHHHHHhCcchhhhcch---hhhhhchHHHHHHHHhcC---
Confidence 45789999988665 47777 66667789999999999999999743211100 000112345554433210
Q ss_pred cccCCCccccccccccCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhcccccCCCCcCCCCh--hhHHHHH
Q 013736 118 PIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLW 195 (437)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~--~~~~~L~ 195 (437)
...++|++||.||+|++++|... .+++.|.
T Consensus 102 ------------------------------------------------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~ 133 (331)
T 3qye_A 102 ------------------------------------------------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLY 133 (331)
T ss_dssp ------------------------------------------------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHH
T ss_pred ------------------------------------------------CchhHHHHhhcccCCCchhhcCCCcccHHHHH
Confidence 12579999999999999999876 7899999
Q ss_pred HHHHHHhHhcCCCcccCChhhHHHHHHHhccCHHHHHHHHHHHHhhc--ccCcccCCchhhHHHHHHHHHHHHHHHCHHH
Q 013736 196 DVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRL--RENFRTNTGMIGVQSQLSTLSQIIRTIDPKL 273 (437)
Q Consensus 196 ~IL~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~lL~~~~P~L 273 (437)
|||.+|+.+||++|||||||+|||++++++ +|++|||||+.+|++. ...| .++++++...+..++.+|+.++|+|
T Consensus 134 ~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~l~~ll~~~~p~L 210 (331)
T 3qye_A 134 NILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQY--RPDMIILQIQMYQLSRLLHDYHRDL 210 (331)
T ss_dssp HHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGG--STTCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcC--CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988776 8999999999999875 3444 3567799999999999999999999
Q ss_pred HHHHHhCCCCccchhhhHHHHhccccCChhhHHHHHHHHhcccCCCCchhhhcccCCCCCCCccchhhhhhhchhhhhcc
Q 013736 274 HQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNV 353 (437)
Q Consensus 274 ~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~vlriWD~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (437)
|+||.+.++++.+|+++||+|+|++++|++.++||||+++++|..
T Consensus 211 ~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~----------------------------------- 255 (331)
T 3qye_A 211 YNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE----------------------------------- 255 (331)
T ss_dssp HHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT-----------------------------------
T ss_pred HHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH-----------------------------------
Confidence 999999999999999999999999999999999999999998753
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCC---CHHHHHHHHHHHH
Q 013736 354 KTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNL---DAKKACNEALKIQ 414 (437)
Q Consensus 354 ~~~~~~~~~~~~l~~~~ail~~~~~~ll~~~~~~~~i~~~l~~l~~~~---d~~~ll~~A~~l~ 414 (437)
+++++|+|+|..+++.||+ +.++++++++|++.+..+ |++.++++|..+.
T Consensus 256 ----------~l~~valaiL~~~~~~ll~-~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 256 ----------VIFKVALSLLGSHKPLILQ-HENLETIVDFIKSTLPNLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp ----------HHHHHHHHHHHHTHHHHHT-CCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCC
T ss_pred ----------HHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCC
Confidence 6899999999999999998 569999999999855556 7889999997664
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.3e-47 Score=373.78 Aligned_cols=258 Identities=21% Similarity=0.391 Sum_probs=219.7
Q ss_pred HHHHHHhhccCCC---ccHHHHHHHHHhCCCCCCcHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 013736 43 ARRWHAAFSEDGH---LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPI 119 (437)
Q Consensus 43 ~~~W~~~l~~~~~---i~~~kl~k~l~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 119 (437)
.++|.+++.+.+. .+.++ ++.++++|||+.+|+.||+.++|+.+. ....+.|..+.++..
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~-l~~l~~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~~----- 67 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKG-LSTLVKSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKDS----- 67 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTT-HHHHHHHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHhhhcccCHHH-HHHHHHCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhccC-----
Confidence 4678888876322 24455 677778899999999999999998653 123456765533210
Q ss_pred cCCCccccccccccCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhcccccCCCCcCCCCh--hhHHHHHHH
Q 013736 120 IGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLWDV 197 (437)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~--~~~~~L~~I 197 (437)
+..++|++||.||+|++++|... .+++.|.||
T Consensus 68 ----------------------------------------------~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~I 101 (310)
T 3hzj_A 68 ----------------------------------------------AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKI 101 (310)
T ss_dssp ----------------------------------------------TTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHH
T ss_pred ----------------------------------------------CcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHH
Confidence 12579999999999999999876 689999999
Q ss_pred HHHHhHhcCCCcccCChhhHHHHHHHhccCHHHHHHHHHHHHhhc--ccCcccCCchhhHHHHHHHHHHHHHHHCHHHHH
Q 013736 198 LAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRL--RENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQ 275 (437)
Q Consensus 198 L~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~lL~~~~P~L~~ 275 (437)
|.+|+.+||++|||||||+|||++++++ +|++|||||+++|.+. +..| .++++++...+..++.+|+.++|+||+
T Consensus 102 L~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~l~~ll~~~~p~L~~ 178 (310)
T 3hzj_A 102 CKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLY--RNNFEDLHCKFYQLERLMQEQLPDLHS 178 (310)
T ss_dssp HHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGT--HHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccc--cccHHHHHHHHHHHHHHHHHhChHHHH
Confidence 9999999999999999999999988888 8999999999999873 4444 356779999999999999999999999
Q ss_pred HHHhCCCCccchhhhHHHHhccccCChhhHHHHHHHHhcccCCCCchhhhcccCCCCCCCccchhhhhhhchhhhhcccc
Q 013736 276 HLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKT 355 (437)
Q Consensus 276 hL~~~~i~~~~~~~~WfltlF~~~lp~~~vlriWD~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (437)
||.+.|+++.+|+++||+|+|++++|++.++||||+++++|..
T Consensus 179 hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~------------------------------------- 221 (310)
T 3hzj_A 179 HFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLN------------------------------------- 221 (310)
T ss_dssp HHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTT-------------------------------------
T ss_pred HHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcH-------------------------------------
Confidence 9999999999999999999999999999999999999998753
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHh-hhcCC----CCHHHHHHHHHHH
Q 013736 356 GLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILA-DITGN----LDAKKACNEALKI 413 (437)
Q Consensus 356 ~~~~~~~~~~l~~~~ail~~~~~~ll~~~~~~~~i~~~l~-~l~~~----~d~~~ll~~A~~l 413 (437)
+++++|+|+|..+++.|++. ++++++++|+ .+|.. .|++.+++.|..+
T Consensus 222 --------~l~~v~lail~~~~~~Ll~~--d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 222 --------IIFHVALALLKTSKEDLLQA--DFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp --------HHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 58889999999999999984 9999999996 67754 4899999999877
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=9.1e-47 Score=367.47 Aligned_cols=263 Identities=21% Similarity=0.279 Sum_probs=221.3
Q ss_pred HHHHHhhccCCCccHHHHHHHHHhC-C-CCCCcHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 013736 44 RRWHAAFSEDGHLDIAKVLRRIQRG-G-IHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG 121 (437)
Q Consensus 44 ~~W~~~l~~~~~i~~~kl~k~l~~~-G-Ip~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 121 (437)
+++++++. ++.+|++++++.+..+ | +|+++|+.||+.|+|+.+.+.+. .|.....
T Consensus 21 ~~i~~~l~-~~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~------------~~~~~~~---------- 77 (292)
T 4hl4_A 21 AEIHQALN-SDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP------------ISGKNLR---------- 77 (292)
T ss_dssp HHHHHHHT-SSSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS------------CCCTTHH----------
T ss_pred HHHHHHHc-CCcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC------------chhhhhc----------
Confidence 46777774 4568999965555543 3 68999999999999998765431 1110000
Q ss_pred CCccccccccccCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhcccccCCCCcCCCC----hhhHHHHHHH
Q 013736 122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYES----ETNQAKLWDV 197 (437)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~----~~~~~~L~~I 197 (437)
.-.+..+||++||.||+|+++.|.. +..++.|.||
T Consensus 78 -----------------------------------------~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~i 116 (292)
T 4hl4_A 78 -----------------------------------------QMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDI 116 (292)
T ss_dssp -----------------------------------------HHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHH
T ss_pred -----------------------------------------ccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHH
Confidence 0013478999999999999998765 3567899999
Q ss_pred HHHHhHhcCCCcccCChhhHHHHHHHhccCHHHHHHHHHHHHhhcccCcccCCchhhHHHHHHHHHHHHHHHCHHHHHHH
Q 013736 198 LAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHL 277 (437)
Q Consensus 198 L~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~~P~L~~hL 277 (437)
|.+|+.+||++|||||||+|||++++++ +|++|||||+++|++..+.|+ .+++.++...+..++.+|+..+|+||+||
T Consensus 117 L~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l~~~~-~~~~~~~~~~~~~l~~ll~~~~P~L~~hL 194 (292)
T 4hl4_A 117 ILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHLRDFM-DPTMDNTKHILNYLMPIIDQVNPELHDFM 194 (292)
T ss_dssp HHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTTGGG-CSSSCTTTGGGGGHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 9999999999999999999999999777 899999999999998666655 45677888999999999999999999999
Q ss_pred HhCCCCccchhhhHHHHhccccCC-hhhHHHHHHHHhcccCCCCchhhhcccCCCCCCCccchhhhhhhchhhhhccccC
Q 013736 278 EDLDGGEYLFAFRMLMVLFRREFS-FVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTG 356 (437)
Q Consensus 278 ~~~~i~~~~~~~~WfltlF~~~lp-~~~vlriWD~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (437)
.+.++ ..+|+++||+|+|++++| ++.++||||+++++|..
T Consensus 195 ~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~-------------------------------------- 235 (292)
T 4hl4_A 195 QSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPL-------------------------------------- 235 (292)
T ss_dssp C-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTT--------------------------------------
T ss_pred HHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCc--------------------------------------
Confidence 99999 469999999999999995 99999999999998743
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 013736 357 LPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYL 418 (437)
Q Consensus 357 ~~~~~~~~~l~~~~ail~~~~~~ll~~~~~~~~i~~~l~~l~~~~d~~~ll~~A~~l~~~~~ 418 (437)
+++|+|+|++..++++||+...++++++.+++++|..+|++.+++.|..++++|.
T Consensus 236 -------~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~p 290 (292)
T 4hl4_A 236 -------MPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFP 290 (292)
T ss_dssp -------HHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHSC
T ss_pred -------HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCC
Confidence 6899999999999999999767899999999999999999999999999998874
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=315.59 Aligned_cols=252 Identities=17% Similarity=0.234 Sum_probs=205.4
Q ss_pred HHHHhhccCCCccHHHHHHHHHhCCCCCCcHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCc
Q 013736 45 RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGK 124 (437)
Q Consensus 45 ~W~~~l~~~~~i~~~kl~k~l~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~ 124 (437)
..+.++ ++..+|.+++++.+++||||+.+|+.||++|+|++|.+++ .|+.++++++++|++++++...
T Consensus 28 ~~~~ll-~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~--~~~~~l~~kr~eY~~l~~~~~~--------- 95 (294)
T 3qwl_A 28 SLEILL-KDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHE--SHAKVMMYRKEQYLDVLHALKV--------- 95 (294)
T ss_dssp HHHHHT-TSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGG--GHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHh-cCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCch--hHHHHHHHHHHHHHHHHHhhhh---------
Confidence 455554 4578899997677767669999999999999999999986 4789999999999999987422
Q ss_pred cccccccccCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhcccccCCCCcCCCChhhHHHHHHHHHHHhHh
Q 013736 125 FITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWV 204 (437)
Q Consensus 125 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~~IL~~y~~~ 204 (437)
.++|+.+.++ ....+..|...
T Consensus 96 -------------------------------------------~r~I~~~tP~----------------~~vfl~~~~~~ 116 (294)
T 3qwl_A 96 -------------------------------------------VRFVSDATPQ----------------AEVYLRMYQLE 116 (294)
T ss_dssp -------------------------------------------TTSCCTTSCH----------------HHHHHHHHHHH
T ss_pred -------------------------------------------hhhhhccCch----------------HHHHHHHHHcc
Confidence 2344432211 11122222211
Q ss_pred ----------cCCCcccCChhhHHHHHHHhccCHHHHHHHHHHHHhhcccCcccCCchhhHHHHHHHHHHHHHHHCHHHH
Q 013736 205 ----------DNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLH 274 (437)
Q Consensus 205 ----------~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~~P~L~ 274 (437)
+++ .++|||..||+++++++.+|++|||||+++|+++..+|.. +++|++.. ++.+|+..+|+|+
T Consensus 117 ~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~~~f~~--~~~gl~~~---l~~LL~~~dP~L~ 190 (294)
T 3qwl_A 117 SGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRD--SLPQLPKA---FEQYLNLEDGRLL 190 (294)
T ss_dssp HTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTTT--TGGGHHHH---HHHHHHHHCHHHH
T ss_pred cccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhCC--ChhHHHHH---HHHHHHHHHHHHH
Confidence 222 2569999999999999999999999999999998777753 56788764 4899999999999
Q ss_pred HHHHhCCCCccchhhhHHHHhccccCChhhHHHHHHHHhcccCCCCchhhhcccCCCCCCCccchhhhhhhchhhhhccc
Q 013736 275 QHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVK 354 (437)
Q Consensus 275 ~hL~~~~i~~~~~~~~WfltlF~~~lp~~~vlriWD~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (437)
+||++.++.+.+++.+||+|+|++++|++.++||||++|+.|.
T Consensus 191 ~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~------------------------------------- 233 (294)
T 3qwl_A 191 THLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSC------------------------------------- 233 (294)
T ss_dssp HHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCS-------------------------------------
T ss_pred HHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCc-------------------------------------
Confidence 9999999988887779999999999999999999999998543
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 013736 355 TGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSK 420 (437)
Q Consensus 355 ~~~~~~~~~~~l~~~~ail~~~~~~ll~~~~~~~~i~~~l~~l~~~~d~~~ll~~A~~l~~~~~~~ 420 (437)
++++++|+|+|..+++.||+ ....++++++|+++| ..|++.++++|..++++|...
T Consensus 234 --------~~l~~valAiL~~~r~~Ll~-~~~~~~il~~Lq~lp-~~di~~ll~~A~~l~~~~~~~ 289 (294)
T 3qwl_A 234 --------KILVFVAVEILLTFKIKVMA-LNSAEKITKFLENIP-QDSSDAIVSKAIDLWHKHCGT 289 (294)
T ss_dssp --------THHHHHHHHHHHHTHHHHHH-CCSHHHHHHHHTTCC-STTHHHHHHHHHHHHHHHHCC
T ss_pred --------hHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHcCC-cccHHHHHHHHHHHHHHcCCC
Confidence 37899999999999999998 445699999999999 679999999999999999873
No 8
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=25.38 E-value=55 Score=24.30 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=27.0
Q ss_pred cCChHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 013736 384 AKGLDDVVKILADITGNLDAKKACNEALKIQKKYL 418 (437)
Q Consensus 384 ~~~~~~i~~~l~~l~~~~d~~~ll~~A~~l~~~~~ 418 (437)
..++++|..+|......-.+-+++++|+.+|++-.
T Consensus 39 ~~d~~eIs~Yle~~~~~~~~~e~vkralsly~~~~ 73 (80)
T 2kvs_A 39 EERHQVIRAYVMSNYTDHQLIETTNRAISLYMANL 73 (80)
T ss_dssp CSSSHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999986655566777888888887643
No 9
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=15.27 E-value=49 Score=24.31 Aligned_cols=11 Identities=45% Similarity=0.706 Sum_probs=9.5
Q ss_pred cccCChhhHHH
Q 013736 209 GYVQGMNDICS 219 (437)
Q Consensus 209 gY~QGm~~Iaa 219 (437)
-|.|||.++++
T Consensus 17 lyfqgM~~~a~ 27 (96)
T 2js3_A 17 LYFQGMTDTAA 27 (96)
T ss_dssp BTTBSTTTHHH
T ss_pred eeeccccccCH
Confidence 39999999886
No 10
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=14.75 E-value=1.6e+02 Score=23.95 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=11.0
Q ss_pred CCCccHHHHHHHHHhCCCC
Q 013736 53 DGHLDIAKVLRRIQRGGIH 71 (437)
Q Consensus 53 ~~~i~~~kl~k~l~~~GIp 71 (437)
+|.|+.+++.+.+..-|.+
T Consensus 99 ~G~I~~~el~~~l~~~g~~ 117 (159)
T 3i5g_C 99 QGLISSAEIRNVLKMLGER 117 (159)
T ss_dssp SSEECHHHHHHHHHHSSSC
T ss_pred CCcCcHHHHHHHHHHhCCC
Confidence 5566666655555555554
Done!