Query 013738
Match_columns 437
No_of_seqs 254 out of 1360
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dj0_A Pseudouridine synthase 100.0 3.9E-73 1.3E-77 555.9 25.7 234 90-359 2-251 (264)
2 1vs3_A TRNA pseudouridine synt 100.0 1.6E-73 5.6E-78 554.4 22.0 232 91-355 1-248 (249)
3 1kd8_A GABH AIV, GCN4 acid bas 94.6 0.05 1.7E-06 36.8 4.5 31 10-40 4-34 (36)
4 1kd8_B GABH BLL, GCN4 acid bas 94.1 0.083 2.9E-06 35.8 4.7 33 9-41 3-35 (36)
5 3m48_A General control protein 93.4 0.1 3.4E-06 34.8 4.1 29 11-39 4-32 (33)
6 1uo4_A General control protein 92.4 0.17 5.9E-06 33.9 4.1 29 11-39 5-33 (34)
7 2oxj_A Hybrid alpha/beta pepti 91.9 0.24 8.2E-06 33.1 4.4 31 9-39 3-33 (34)
8 3c3f_A Alpha/beta peptide with 91.8 0.26 9E-06 32.9 4.4 30 10-39 4-33 (34)
9 2wq1_A General control protein 90.9 0.34 1.2E-05 32.2 4.3 29 10-38 3-31 (33)
10 3c3g_A Alpha/beta peptide with 90.5 0.44 1.5E-05 31.7 4.5 30 10-39 3-32 (33)
11 2yy0_A C-MYC-binding protein; 88.5 0.64 2.2E-05 34.3 4.7 35 5-39 17-51 (53)
12 1gk7_A Vimentin; intermediate 87.3 1.2 3.9E-05 30.9 5.1 33 6-38 5-37 (39)
13 2bni_A General control protein 86.4 0.88 3E-05 30.5 3.9 29 10-38 4-32 (34)
14 2hy6_A General control protein 86.3 1.1 3.7E-05 30.0 4.3 28 11-38 5-32 (34)
15 2r2v_A GCN4 leucine zipper; co 82.0 2.1 7.3E-05 28.6 4.3 28 11-38 5-32 (34)
16 2v9k_A Uncharacterized protein 80.3 10 0.00035 40.1 11.2 156 116-300 317-486 (530)
17 1dip_A Delta-sleep-inducing pe 78.7 4.5 0.00015 31.8 5.8 34 6-39 14-47 (78)
18 3nmd_A CGMP dependent protein 77.2 4.2 0.00014 31.8 5.3 35 8-42 34-68 (72)
19 1zme_C Proline utilization tra 75.6 2.8 9.5E-05 31.4 3.9 26 14-39 44-69 (70)
20 1dh3_A Transcription factor CR 75.1 3 0.0001 30.8 3.8 26 14-39 22-47 (55)
21 2pnv_A Small conductance calci 69.2 9.3 0.00032 26.9 5.1 34 6-39 8-41 (43)
22 1hjb_A Ccaat/enhancer binding 67.3 8.3 0.00028 31.2 5.1 31 9-39 45-75 (87)
23 2dgc_A Protein (GCN4); basic d 65.9 8.2 0.00028 29.2 4.6 24 15-38 31-54 (63)
24 3s4r_A Vimentin; alpha-helix, 64.9 7.1 0.00024 31.8 4.4 33 7-39 9-41 (93)
25 1t2k_D Cyclic-AMP-dependent tr 64.9 11 0.00038 27.9 5.2 22 16-37 24-45 (61)
26 2oa5_A Hypothetical protein BQ 63.2 3.1 0.00011 35.0 1.9 27 13-39 7-33 (110)
27 1gu4_A CAAT/enhancer binding p 62.7 8.4 0.00029 30.5 4.3 21 18-38 40-60 (78)
28 1hjb_A Ccaat/enhancer binding 61.8 8.7 0.0003 31.0 4.3 26 14-39 36-61 (87)
29 2oqq_A Transcription factor HY 60.9 9.9 0.00034 26.6 3.8 25 12-36 15-39 (42)
30 1ci6_A Transcription factor AT 60.7 10 0.00035 28.5 4.3 25 15-39 24-48 (63)
31 1ci6_A Transcription factor AT 60.4 13 0.00046 27.9 4.9 28 11-38 34-61 (63)
32 1nkp_B MAX protein, MYC proto- 60.2 14 0.00046 29.0 5.2 33 7-39 47-79 (83)
33 1gu4_A CAAT/enhancer binding p 59.4 11 0.00036 29.9 4.3 33 7-39 43-75 (78)
34 1dip_A Delta-sleep-inducing pe 59.2 5.1 0.00017 31.4 2.3 30 7-36 8-37 (78)
35 2oqq_A Transcription factor HY 57.7 21 0.00073 24.9 5.0 24 16-39 5-28 (42)
36 2jee_A YIIU; FTSZ, septum, coi 55.8 19 0.00064 28.8 5.2 13 26-38 53-65 (81)
37 2dgc_A Protein (GCN4); basic d 55.2 15 0.0005 27.8 4.3 35 5-39 28-62 (63)
38 1go4_E MAD1 (mitotic arrest de 51.2 15 0.00051 30.4 4.1 26 14-39 12-37 (100)
39 1jnm_A Proto-oncogene C-JUN; B 48.9 12 0.00041 27.9 2.9 26 14-39 22-47 (62)
40 3cvf_A Homer-3, homer protein 48.7 7.2 0.00025 31.0 1.7 28 12-39 4-31 (79)
41 3mq7_A Bone marrow stromal ant 47.5 26 0.0009 29.7 5.0 20 20-39 70-89 (121)
42 2wt7_A Proto-oncogene protein 47.2 35 0.0012 25.5 5.3 23 16-38 25-47 (63)
43 3trt_A Vimentin; cytoskeleton, 45.7 25 0.00086 26.9 4.5 30 5-34 47-76 (77)
44 1g6u_A Domain swapped dimer; d 45.5 27 0.00092 24.2 3.9 25 15-39 21-45 (48)
45 3viq_B Mating-type switching p 45.4 20 0.00068 28.8 3.8 28 11-38 5-32 (85)
46 1a93_B MAX protein, coiled coi 44.7 37 0.0013 22.7 4.4 28 12-39 5-32 (34)
47 3viq_B Mating-type switching p 43.0 20 0.00068 28.9 3.5 25 15-39 2-26 (85)
48 3he4_B Synzip5; heterodimeric 42.9 25 0.00086 24.2 3.4 22 15-36 4-25 (46)
49 1uuj_A Platelet-activating fac 41.7 9.5 0.00033 30.9 1.4 26 14-39 58-83 (88)
50 3ni0_A Bone marrow stromal ant 41.5 40 0.0014 27.7 5.0 20 20-39 66-85 (99)
51 1ic2_A Tropomyosin alpha chain 41.0 43 0.0015 26.1 5.2 29 11-39 38-66 (81)
52 2yy0_A C-MYC-binding protein; 40.9 33 0.0011 25.0 4.1 27 13-39 18-44 (53)
53 1nlw_A MAD protein, MAX dimeri 40.8 41 0.0014 26.4 5.0 32 7-38 47-78 (80)
54 1hwt_C Protein (heme activator 40.6 9.4 0.00032 29.2 1.2 21 14-34 58-78 (81)
55 1g6u_A Domain swapped dimer; d 40.5 36 0.0012 23.6 4.0 29 6-34 19-47 (48)
56 3mq7_A Bone marrow stromal ant 39.2 42 0.0015 28.5 5.0 33 6-38 70-102 (121)
57 2wuj_A Septum site-determining 38.3 29 0.00098 25.5 3.5 20 19-38 32-51 (57)
58 3cve_A Homer protein homolog 1 37.6 22 0.00077 27.7 2.9 21 18-38 4-24 (72)
59 1fzc_B Fibrin; blood coagulati 37.2 39 0.0013 33.5 5.4 32 6-37 29-60 (328)
60 1nkp_A C-MYC, MYC proto-oncoge 35.8 56 0.0019 26.0 5.2 33 7-39 52-84 (88)
61 1t2k_D Cyclic-AMP-dependent tr 35.7 70 0.0024 23.5 5.4 27 11-37 33-59 (61)
62 1jnm_A Proto-oncogene C-JUN; B 35.5 70 0.0024 23.6 5.3 32 7-38 22-53 (62)
63 2akf_A Coronin-1A; coiled coil 35.1 61 0.0021 21.0 4.1 25 12-36 4-28 (32)
64 1am9_A Srebp-1A, protein (ster 34.5 67 0.0023 25.1 5.4 26 14-39 50-75 (82)
65 1fmh_A General control protein 34.0 48 0.0016 21.3 3.5 23 16-38 3-25 (33)
66 4dzn_A Coiled-coil peptide CC- 33.9 76 0.0026 20.4 4.4 25 11-35 6-30 (33)
67 1gd2_E Transcription factor PA 33.9 54 0.0018 25.3 4.5 33 7-39 29-61 (70)
68 2lw1_A ABC transporter ATP-bin 32.3 53 0.0018 26.0 4.5 29 11-39 19-47 (89)
69 2w83_C C-JUN-amino-terminal ki 32.1 81 0.0028 24.8 5.3 31 11-41 27-57 (77)
70 2er8_A Regulatory protein Leu3 31.9 22 0.00074 26.5 2.0 18 21-38 49-66 (72)
71 1jcd_A Major outer membrane li 31.8 78 0.0027 23.0 4.8 31 9-39 6-36 (52)
72 3m48_A General control protein 31.3 53 0.0018 21.8 3.4 22 18-39 4-25 (33)
73 1fmh_B General control protein 31.3 55 0.0019 21.1 3.4 24 15-38 2-25 (33)
74 2wt7_A Proto-oncogene protein 30.4 96 0.0033 23.0 5.4 28 11-38 34-61 (63)
75 3u1c_A Tropomyosin alpha-1 cha 30.3 75 0.0026 25.9 5.2 29 11-39 41-69 (101)
76 1lwu_B Fibrinogen beta chain; 30.2 34 0.0012 33.8 3.6 30 7-36 28-57 (323)
77 2akf_A Coronin-1A; coiled coil 29.6 73 0.0025 20.6 3.8 25 7-31 6-30 (32)
78 1dh3_A Transcription factor CR 28.8 74 0.0025 23.1 4.4 32 6-37 21-52 (55)
79 2w83_C C-JUN-amino-terminal ki 28.7 27 0.00091 27.6 2.0 18 14-31 58-75 (77)
80 3kqg_A Langerin, C-type lectin 28.7 76 0.0026 27.3 5.3 22 17-38 19-40 (182)
81 2zvf_A Alanyl-tRNA synthetase; 28.4 57 0.0019 28.3 4.4 28 12-39 30-57 (171)
82 2er8_A Regulatory protein Leu3 28.1 41 0.0014 24.9 3.0 23 13-35 48-70 (72)
83 1hlo_A Protein (transcription 28.1 74 0.0025 24.5 4.6 23 14-36 57-79 (80)
84 3s9g_A Protein hexim1; cyclin 27.9 63 0.0022 26.6 4.2 17 20-36 64-80 (104)
85 3ljm_A Coil Ser L9C; de novo d 26.9 1E+02 0.0034 19.6 4.0 22 12-33 6-27 (31)
86 1wt6_A Myotonin-protein kinase 23.9 1.3E+02 0.0045 23.9 5.2 29 11-39 42-70 (81)
87 3coq_A Regulatory protein GAL4 23.6 66 0.0023 24.6 3.6 22 13-34 44-65 (89)
88 1lwu_C Fibrinogen gamma chain; 23.3 84 0.0029 31.0 5.0 30 8-37 27-56 (323)
89 2xdj_A Uncharacterized protein 23.3 1.2E+02 0.004 24.1 4.9 19 17-35 37-55 (83)
90 2j5u_A MREC protein; bacterial 23.1 76 0.0026 30.0 4.5 24 16-39 38-61 (255)
91 2wg5_A General control protein 23.0 66 0.0022 26.6 3.6 25 11-35 11-35 (109)
92 1fzc_C Fibrin; blood coagulati 22.5 61 0.0021 32.0 3.8 27 10-36 14-40 (319)
93 3iyn_Q Protein IX, PIX, hexon- 22.2 97 0.0033 26.6 4.4 29 11-39 102-130 (140)
94 1p9i_A Cortexillin I/GCN4 hybr 22.1 1.3E+02 0.0043 19.1 3.8 15 23-37 8-22 (31)
95 3nmd_A CGMP dependent protein 22.0 1.6E+02 0.0056 22.8 5.3 23 17-39 36-58 (72)
96 1nkp_B MAX protein, MYC proto- 21.6 1.6E+02 0.0054 22.7 5.4 27 13-39 46-72 (83)
97 2xzr_A Immunoglobulin-binding 21.1 1.6E+02 0.0055 24.2 5.3 28 11-38 80-107 (114)
98 3ra3_B P2F; coiled coil domain 20.8 48 0.0016 20.6 1.6 14 25-38 4-17 (28)
99 2w6b_A RHO guanine nucleotide 20.8 1.5E+02 0.0052 21.8 4.6 28 12-39 8-35 (56)
100 4dac_A Computationally designe 20.5 1.1E+02 0.0038 19.0 3.2 22 16-37 3-24 (28)
101 2fcw_A Alpha-2-macroglobulin r 20.4 1.2E+02 0.0043 25.3 4.7 36 4-39 64-99 (109)
102 1q08_A Zn(II)-responsive regul 20.2 1.6E+02 0.0054 22.9 5.2 35 7-41 39-73 (99)
103 3tnu_B Keratin, type II cytosk 20.1 94 0.0032 26.2 4.0 32 6-37 28-59 (129)
No 1
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Probab=100.00 E-value=3.9e-73 Score=555.93 Aligned_cols=234 Identities=27% Similarity=0.421 Sum_probs=212.2
Q ss_pred ccceEEEEEEEeCCCceeecccCCCCCcHHHHHHHHHHhccccccCCcceeeeeeccCCccccccCCEEEEEEcCCcccc
Q 013738 90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKEC 169 (437)
Q Consensus 90 ~kr~iaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~ragRTDkGVhA~gQVvs~~~~s~~~~~ 169 (437)
|+++|+|.|+|+||+|+|||.|++ .+|||++|++||.++ .+ .++.+++|||||+||||+|||+||++.+.+
T Consensus 2 Pm~r~~l~i~YdGt~y~GwQ~Q~~-~~TVq~~Le~AL~~~---~~--~~v~~~~agRTDaGVHA~gqv~~f~~~~~~--- 72 (264)
T 1dj0_A 2 PVYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQV---AN--EPITVFCAGRTDAGVHGTGQVVHFETTALR--- 72 (264)
T ss_dssp CCEEEEEEEEECCTTSSCSCCTTC-SSCHHHHHHHHHHHH---HT--SCCCEEESSCCCTTCEEEEEEEEEEESCCC---
T ss_pred CccEEEEEEEEeCCCceeEEECcC-CCCHHHHHHHHHHHH---hC--CCeEEEEeccCCCCCchhhEEEEEEECCCC---
Confidence 688999999999999999999999 599999999999996 22 468999999999999999999999987654
Q ss_pred CCCCCCCCccchhhccccHHHHHHHHhhcCCCCeeEeeeEEcCCCCCccccCCcceeEEEecC----------------C
Q 013738 170 NTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR----------------E 233 (437)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~RtY~Y~f~~----------------~ 233 (437)
++..+...||+.||+||+|++|.+||++|||||+|.+|+|+|+|+. .
T Consensus 73 -----------------~~~~~~~~lN~~LP~dI~V~~~~~V~~~FhARf~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~ 135 (264)
T 1dj0_A 73 -----------------KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYE 135 (264)
T ss_dssp -----------------CHHHHHHHHHHTSCTTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSCCCTTTTSSEECCS
T ss_pred -----------------CHHHHHHHHHhhCCcCeEEEEEEeCCCCCCcccccccEEEEEEEccCCCCChhHcCceEeeCC
Confidence 2346899999999999999999999999999999999999999963 4
Q ss_pred CCCHHHHHHHHhhccccccccceeecccCCcCcceEEEEEEEEEecccccCCCcEEEEEEEeCcchhhhHHHHHHHHHHH
Q 013738 234 NLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313 (437)
Q Consensus 234 ~LDi~~M~~Aak~f~GtHDF~NF~k~d~~~~~~~~R~I~~~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~L~~V 313 (437)
+||+++|++||+.|+|+|||+|||+.+. ...+++|+|.+++|.+ .+++++|+|+|+||||||||+|||+|++|
T Consensus 136 ~lD~~~M~~aa~~l~G~HDF~~F~~~~~-~~~s~vR~I~~~~v~~------~~~~i~~~i~g~~FL~~mVR~mvG~L~~v 208 (264)
T 1dj0_A 136 PLDAERMHRAAQCLLGENDFTSFRAVQC-QSRTPWRNVMHINVTR------HGPYVVVDIKANAFVHHMVRNIVGSLMEV 208 (264)
T ss_dssp CCCHHHHHHHHGGGCEEEECGGGCCTTC-CCSCCEEEEEEEEEEE------ETTEEEEEEEESCCCTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCcccHHHhccCCC-CCCCcEEEEEEEEEEE------CCCEEEEEEEEchHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999998774 3578999999999975 24799999999999999999999999999
Q ss_pred HcCCCCHHHHHHHHhcCCCCCCCCccCCCCCCeeeecCCCCCCCcc
Q 013738 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFT 359 (437)
Q Consensus 314 G~G~~~~~~i~~lL~~~~~~~k~~~~~AP~~gLvL~dv~y~~~~~~ 359 (437)
|+|++++++|.++|+.++ +....++|||+||+|++|.|+ .+|.
T Consensus 209 G~G~~~~~~i~~~L~~~~--r~~~~~~APa~GL~L~~V~Y~-~~~~ 251 (264)
T 1dj0_A 209 GAHNQPESWIAELLAAKD--RTLAAATAKAEGLYLVAVDYP-DRYD 251 (264)
T ss_dssp HTTSSCTTHHHHHHHHCC--GGGSCCCCCSTTEEEEEEECC-GGGC
T ss_pred HCCCCCHHHHHHHHhCCC--cccCcCccCCCCcEEeeeccC-chhc
Confidence 999999999999999864 556789999999999999996 3453
No 2
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural NPPSFA, national project on protein structural and function analyses; 2.25A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-73 Score=554.39 Aligned_cols=232 Identities=28% Similarity=0.397 Sum_probs=209.0
Q ss_pred cceEEEEEEEeCCCceeecccCCCCCcHHHHHHHHHHhccccccCCcceeeeeeccCCccccccCCEEEEEEcCCccccC
Q 013738 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECN 170 (437)
Q Consensus 91 kr~iaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~ragRTDkGVhA~gQVvs~~~~s~~~~~~ 170 (437)
+++|+|.|+|+||+|+|||.|++..+|||++|++||.++ .+++.+++|||||+||||+|||+||++.+.+++
T Consensus 1 M~r~~l~i~YdGt~y~GwQ~Q~~~~~TVq~~Le~AL~~~------~~~v~~~~agRTDaGVHA~gqv~~f~~~~~~~~-- 72 (249)
T 1vs3_A 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI------GALPKAVAAGRTDAGVHALAMPFHVDVESAIPV-- 72 (249)
T ss_dssp CEEEEEEEEECGGGCSBSSCCCTTCCCHHHHHHHHGGGG------TBCSCCEESSCCBTTCEEEEEEEEEEECSCCCG--
T ss_pred CcEEEEEEEEECCCceeEeECCCCCCCHHHHHHHHHHHc------CCcceEEEeccCcCCcCccccEEEEEECCCCCH--
Confidence 368999999999999999999983389999999999995 246899999999999999999999999765421
Q ss_pred CCCCCCCccchhhccccHHHHHHHHhhcCCCCeeEeeeEEcCCCCCccccCCcceeEEEecC----------------CC
Q 013738 171 TNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR----------------EN 234 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~RtY~Y~f~~----------------~~ 234 (437)
..+...||+.||+||+|++|.+||++|||||+|.+|+|+|+|+. .+
T Consensus 73 ------------------~~~~~~lN~~LP~dI~V~~~~~v~~~FhARf~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~ 134 (249)
T 1vs3_A 73 ------------------EKVPEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRP 134 (249)
T ss_dssp ------------------GGHHHHHHHHSCTTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSCCTTTTTTSEEECSC
T ss_pred ------------------HHHHHHHHhcCCcCEEEEEEEECCCCCCcccccccEEEEEEEccCCCCChhhCCeeEEeCCC
Confidence 25889999999999999999999999999999999999999962 47
Q ss_pred CCHHHHHHHHhhccccccccceeecccCCcCcceEEEEEEEEEecccccCCCcEEEEEEEeCcchhhhHHHHHHHHHHHH
Q 013738 235 LNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314 (437)
Q Consensus 235 LDi~~M~~Aak~f~GtHDF~NF~k~d~~~~~~~~R~I~~~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~L~~VG 314 (437)
||+++|++||+.|+|+|||+|||+.+. .+++|+|.+++|.+... ..+++++|+|+|+||||||||+|||+|++||
T Consensus 135 ldi~~m~~aa~~l~G~HDF~~F~~~~~---~~~vR~I~~~~v~~~~~--~~~~~i~~~i~g~~FL~~mVR~mvG~l~~vg 209 (249)
T 1vs3_A 135 LDLEAMEEALSLLLGRHNFLGFAKEET---RPGERELLEARLQVAEG--EAGLEVRLYFRGKSFLRGQVRGMVGTLLEVG 209 (249)
T ss_dssp CCHHHHHHHHHHHSEEEEGGGGCSSCC---SCCEEEEEEEEEEEEEC--SSSEEEEEEEEESCCCTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCceeHHheecCCC---CCCCcEEEEEEEEeccc--cCCCEEEEEEEEChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999775 68999999999974321 2357999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhcCCCCCCCCccCCCCCCeeeecCCCCC
Q 013738 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDG 355 (437)
Q Consensus 315 ~G~~~~~~i~~lL~~~~~~~k~~~~~AP~~gLvL~dv~y~~ 355 (437)
+|++++++|.++|+..+ +...+++|||+||+|++|.|++
T Consensus 210 ~g~~~~~~i~~~L~~~~--r~~~~~~APa~GL~L~~v~Y~~ 248 (249)
T 1vs3_A 210 LGKRPPESLKAILKTAD--RRLAGPTAPAHGLYFVEAAYPE 248 (249)
T ss_dssp HSSSCGGGHHHHHHHCC--GGGSCCCCCGGGEEEEEEECCC
T ss_pred CCCCCHHHHHHHHhCCC--cccCcCccCCCCcEEeeeeCCC
Confidence 99999999999999864 4567899999999999999963
No 3
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=94.60 E-value=0.05 Score=36.83 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013738 10 SSLQSQLEALQNRVKELEADNAKLLSKLSLC 40 (437)
Q Consensus 10 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 40 (437)
..|+..+|.|+.+..+||.|++||++.+..|
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 4678899999999999999999999999875
No 4
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.08 E-value=0.083 Score=35.75 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013738 9 ISSLQSQLEALQNRVKELEADNAKLLSKLSLCR 41 (437)
Q Consensus 9 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 41 (437)
...|+..+|.|+.+-.+||.|++||++.+.+|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 346788999999999999999999999998863
No 5
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=93.42 E-value=0.1 Score=34.81 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
.|+..+|.|+.+-.+||.|++||++.+.+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 57889999999999999999999998764
No 6
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=92.37 E-value=0.17 Score=33.86 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
.|+..+|.|+.+-.+||.|++||++.|.+
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 57889999999999999999999998764
No 7
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=91.90 E-value=0.24 Score=33.13 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 9 ISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 9 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
...|+..+|.|+.+-.+||.|+++|++.+.+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 3568889999999999999999999998764
No 8
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=91.76 E-value=0.26 Score=32.89 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 10 SSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 10 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
..|+..+|.|+.+-.+||.|+++|++.+.+
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 467889999999999999999999997753
No 9
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=90.94 E-value=0.34 Score=32.18 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 10 SSLQSQLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 10 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
..|+..+|.|+.+..+||.|+++|++.+-
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 35788999999999999999999998764
No 10
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=90.50 E-value=0.44 Score=31.66 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 10 SSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 10 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
..|+..+|.|+.+-.+||.|+++|++.+.+
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 357888999999999999999999997753
No 11
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.50 E-value=0.64 Score=34.29 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 5 KQELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
.+.-+..|+.+.+.|+.|+.+|.++++.|++++.+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556788999999999999999999999998764
No 12
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=87.27 E-value=1.2 Score=30.92 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 6 QELISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
-|++.+|-.-.+.-+.||..||.+|..|..++.
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888899999999999999999998875
No 13
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=86.42 E-value=0.88 Score=30.46 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 10 SSLQSQLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 10 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
..|+..+|.|+.+=.+||.|+++|++.+.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 45788999999999999999999998764
No 14
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=86.31 E-value=1.1 Score=29.98 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
.|+..+|.|+.+-.+||.|+++|++.+-
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5778899999999999999999998764
No 15
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=82.01 E-value=2.1 Score=28.60 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
.++..+|.|+.+-.+||.|+++|++.|-
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 5678899999999999999999998764
No 16
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=80.29 E-value=10 Score=40.14 Aligned_cols=156 Identities=13% Similarity=0.178 Sum_probs=95.8
Q ss_pred CcHHHHHHHHHHhccccccCCcceeeeeeccCCccccccCC----EEEEEEcCCccccCCCCCCCCccchhhccccHHHH
Q 013738 116 PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQ----VIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDY 191 (437)
Q Consensus 116 ~TVE~~L~~AL~k~~li~~~~~~~~~~ragRTDkGVhA~gQ----Vvs~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~~ 191 (437)
.|||+.|-..+... . ....+.|+.|||-|.-|--+|. |+-+. +..... .+. .+...+
T Consensus 317 ~SVee~I~~~i~~~---f-~~~~~~Fh~sGREDvDVRmLG~GRPFvlEi~-~P~r~~-----------~~~---~dl~~l 377 (530)
T 2v9k_A 317 SSVEELISDHLLAV---F-KAESFNFSSSGREDVDVRTLGNGRPFAIELV-NPHRVH-----------FTS---QEIKEL 377 (530)
T ss_dssp CCHHHHHHTTHHHH---H-TCSEEEEEESSCCCTTCEEEEEEEEEEEEEE-SCSCCC-----------CCH---HHHHHH
T ss_pred CCHHHHHHHHHHHh---c-CCCeEEEeecCCCCCceeecCCCCcEEEEec-Cccccc-----------cch---hHHHHH
Confidence 69999888777664 2 2357899999999999999998 44442 110000 000 012235
Q ss_pred HHHHhhcCCCCeeEeeeEEcCCCCCcccc----CCcceeEEEecC-CCCCHHHHHHHHhhccccccccceee--cccCCc
Q 013738 192 VRVLNRVLPKDIRVIGWSPAPTDFSARFS----CISREYKYFFWR-ENLNLSAMESAGKKFVGEHDFRNFCK--MDAANV 264 (437)
Q Consensus 192 ~~~LN~~LP~dIrV~~~~~V~~~F~ARf~----c~~RtY~Y~f~~-~~LDi~~M~~Aak~f~GtHDF~NF~k--~d~~~~ 264 (437)
...+|. .-..|.|.+...|+..=-.+.- -..++|+=+++. .+++-+.++.+.. |.|-- -+-+ ..+...
T Consensus 378 e~~IN~-~~~~V~V~~L~~v~~~~~~~ik~ge~~~~K~Y~alv~~~~~v~~e~l~~~~~-l~~l~---I~QrtP~RV~hR 452 (530)
T 2v9k_A 378 QQKINN-SSNKIQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIEFLND-IKDLK---IDQKTPLRVLHR 452 (530)
T ss_dssp HHHHHT-TCSSEEEEEEEEECTHHHHHHHHHHHHCCEEEEEEEEESSCCCHHHHGGGGG-CCSEE---EEEECCGGGTTT
T ss_pred HHHHhc-cCCcEEEEeeEEEcHHHHHHHhcccccCCeEEEEEEEEcCCCCHHHHHHHHh-cCCce---eeccCCeEEEEe
Confidence 567897 3355999999988632111111 234889877764 5688777777655 55411 1111 111111
Q ss_pred C---cceEEEEEEEEEecccccCCCcEEEEEEEeCcchh
Q 013738 265 H---NYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLW 300 (437)
Q Consensus 265 ~---~~~R~I~~~~I~~~~~~~~~~~~~~~~I~G~sFL~ 300 (437)
+ .=.|+|+++++...+ ..++.+.|..+|=+|
T Consensus 453 R~~~~R~R~I~~i~~~~~~-----~~~~~l~i~~eaGtY 486 (530)
T 2v9k_A 453 RPLAVRARVIHFMETQYVD-----EHHFRLHLKTQAGTY 486 (530)
T ss_dssp SCCCEEEEEEEEEEEEEEE-----TTEEEEEEEECTTCC
T ss_pred cCCCccceEEEEEEEEEec-----CCEEEEEEEecCCCE
Confidence 1 236899999987642 468999999998666
No 17
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=78.66 E-value=4.5 Score=31.77 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 6 QELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
.|.+..|+.++..|..|+.+||.||.-|+.-.+.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~asp 47 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLASP 47 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 3445578888888888889999999888886554
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.20 E-value=4.2 Score=31.84 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013738 8 LISSLQSQLEALQNRVKELEADNAKLLSKLSLCRC 42 (437)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 42 (437)
.+......++.|..++.|.|++++.|++++-.+++
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455667888889999999999999998877553
No 19
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=75.55 E-value=2.8 Score=31.35 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 14 ~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
..++.|..||.+||..++.|.+.+++
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999987764
No 20
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=75.05 E-value=3 Score=30.78 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 14 ~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
.-++.|..+|.+|+.||..|..+++.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788999999999999999998875
No 21
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=69.17 E-value=9.3 Score=26.94 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 6 QELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
-+.++.+.+..+.|-.||-.||.++..|...++.
T Consensus 8 ydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3677889999999999999999999999888764
No 22
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.27 E-value=8.3 Score=31.16 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 9 ISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 9 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
+..|+.+-+.|..+|.+|+.|+..|+..+.+
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777777777777776665
No 23
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=65.87 E-value=8.2 Score=29.18 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 15 QLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 15 ~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
.++.|..+|.+|+.+|..|.+++.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666665555544
No 24
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=64.90 E-value=7.1 Score=31.77 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
|++..|-...+..+.||..||++|..|..++..
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~ 41 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQ 41 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999999999999999999988865
No 25
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=64.87 E-value=11 Score=27.93 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013738 16 LEALQNRVKELEADNAKLLSKL 37 (437)
Q Consensus 16 ~~~l~~~~~~l~~~~~~l~~~~ 37 (437)
++.|..+|.+|+.+|..|.+++
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 26
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=63.22 E-value=3.1 Score=35.03 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 13 QSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 13 ~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
....|+|.++++.|+-||..|++++.+
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345899999999999999999999864
No 27
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=62.71 E-value=8.4 Score=30.48 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 013738 18 ALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 18 ~l~~~~~~l~~~~~~l~~~~~ 38 (437)
++..|+.+||+||+.|+.+++
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544443
No 28
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=61.83 E-value=8.7 Score=31.03 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 14 ~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
.....+..|+.+||+||++|+.++..
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778899999999998887765
No 29
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=60.89 E-value=9.9 Score=26.60 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013738 12 LQSQLEALQNRVKELEADNAKLLSK 36 (437)
Q Consensus 12 ~~~~~~~l~~~~~~l~~~~~~l~~~ 36 (437)
++.....|-.||--|+.||+-|.+.
T Consensus 15 le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333444444444444444444443
No 30
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=60.66 E-value=10 Score=28.53 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 15 QLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 15 ~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
..+.|..++++|+.+|..|+.+++.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~ 48 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADS 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555543
No 31
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=60.38 E-value=13 Score=27.88 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
.|+.+-..|..+|..|+.|++.|++.+.
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666677777777777766543
No 32
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=60.24 E-value=14 Score=29.03 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
+-|..|+.+...|...+.+|+.+++.|..+++.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777788888888888888888887765
No 33
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=59.44 E-value=11 Score=29.92 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
..+..|+.+-+.|..+|.+|+.|+..|+..+.+
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788888999999999999999887765
No 34
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=59.24 E-value=5.1 Score=31.44 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013738 7 ELISSLQSQLEALQNRVKELEADNAKLLSK 36 (437)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 36 (437)
.+.-+.+.++|.|..+|+||+..|.+|..+
T Consensus 8 HLm~AVREEVevLKe~I~EL~e~~~qLE~E 37 (78)
T 1dip_A 8 HLMYAVREEVEILKEQIRELVEKNSQLERE 37 (78)
T ss_dssp GGGGTCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456788999999999999999999764
No 35
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=57.69 E-value=21 Score=24.92 Aligned_cols=24 Identities=50% Similarity=0.703 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 16 LEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 16 ~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
+..|-.|+++||..|+.|.+.+|.
T Consensus 5 l~eLE~r~k~le~~naeLEervst 28 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLST 28 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888877764
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.83 E-value=19 Score=28.76 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhh
Q 013738 26 LEADNAKLLSKLS 38 (437)
Q Consensus 26 l~~~~~~l~~~~~ 38 (437)
|+.||++|+.+.+
T Consensus 53 L~~en~qLk~E~~ 65 (81)
T 2jee_A 53 LERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555655544
No 37
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=55.18 E-value=15 Score=27.78 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 5 KQELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
+.+-+..|+.+++.|...-.+|+.++++|+.++.+
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35567788999999999999999999999987753
No 38
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.20 E-value=15 Score=30.44 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 14 ~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
.++..|+.+|.+||.|+.+|.+++..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~ 37 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRM 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888888888888776654
No 39
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=48.92 E-value=12 Score=27.90 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 14 ~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
..++.|..+|.+|+.+|..|.++++.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777776655
No 40
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=48.73 E-value=7.2 Score=31.04 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 12 LQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 12 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
|.++-+.+..|+|++|.+|+.|+.+++.
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~ 31 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRA 31 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4566677778888888888887777654
No 41
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=47.48 E-value=26 Score=29.74 Aligned_cols=20 Identities=40% Similarity=0.456 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 013738 20 QNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 20 ~~~~~~l~~~~~~l~~~~~~ 39 (437)
+.+|+||+.|+..|..+|.+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666654
No 42
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=47.25 E-value=35 Score=25.46 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 013738 16 LEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 16 ~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
+..|..+|..|+.+|..|.++++
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555443
No 43
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=45.66 E-value=25 Score=26.94 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013738 5 KQELISSLQSQLEALQNRVKELEADNAKLL 34 (437)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 34 (437)
.++.+.+.+.++..|+..|+.|+.|++-|+
T Consensus 47 ~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 47 NNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555667778888888888888877664
No 44
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=45.50 E-value=27 Score=24.24 Aligned_cols=25 Identities=40% Similarity=0.473 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 15 QLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 15 ~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
++.+|...+|.||..++-|++.++.
T Consensus 21 elaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777778888888777653
No 45
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=45.36 E-value=20 Score=28.85 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
+++..+++|...+.+|+++.+.+.++++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555555555555544443
No 46
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=44.70 E-value=37 Score=22.75 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 12 LQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 12 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
++....+..+-|.+|+++|..|..|+..
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 4566778888999999999999998753
No 47
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=42.97 E-value=20 Score=28.86 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 15 QLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 15 ~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
+.+.|..||++|+++.++|.++++.
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~ 26 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQD 26 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999887
No 48
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=42.90 E-value=25 Score=24.19 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013738 15 QLEALQNRVKELEADNAKLLSK 36 (437)
Q Consensus 15 ~~~~l~~~~~~l~~~~~~l~~~ 36 (437)
-+..|.+-|||||..|+.|+.-
T Consensus 4 tvkelknyiqeleernaelknl 25 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNL 25 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhH
Confidence 3567888999999999888763
No 49
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=41.66 E-value=9.5 Score=30.92 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 14 ~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
+.+-.|+++|.+||+++..|++++.+
T Consensus 58 TSViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 58 TSVIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567899999999999999887654
No 50
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=41.48 E-value=40 Score=27.65 Aligned_cols=20 Identities=45% Similarity=0.537 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 013738 20 QNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 20 ~~~~~~l~~~~~~l~~~~~~ 39 (437)
..||+||+.|+..|..+|..
T Consensus 66 q~~v~elqgEI~~Lnq~Lqd 85 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELEN 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999998876
No 51
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=40.97 E-value=43 Score=26.12 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
....++.+|..|++.||.++.+...++..
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678889999999999999999888765
No 52
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.89 E-value=33 Score=24.99 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 13 QSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 13 ~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
.+++++|++-+.+|.++++.|.++++.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999998765
No 53
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=40.79 E-value=41 Score=26.38 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
+-|..|+.+...|...+.+|..+++.|+.+|+
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666677777777766654
No 54
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=40.62 E-value=9.4 Score=29.18 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013738 14 SQLEALQNRVKELEADNAKLL 34 (437)
Q Consensus 14 ~~~~~l~~~~~~l~~~~~~l~ 34 (437)
..++.|..||.+||..+++|.
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 678888888888888777764
No 55
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=40.47 E-value=36 Score=23.59 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013738 6 QELISSLQSQLEALQNRVKELEADNAKLL 34 (437)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 34 (437)
||....+++++.+|..++-.|...++-|+
T Consensus 19 peelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 19 PEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555777777777777777777666553
No 56
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=39.15 E-value=42 Score=28.48 Aligned_cols=33 Identities=15% Similarity=0.361 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 6 QELISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
++.+-.|+.+++.|-..+++.++|+++|+....
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 445667888889999999999999999987543
No 57
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=38.27 E-value=29 Score=25.53 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 013738 19 LQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 19 l~~~~~~l~~~~~~l~~~~~ 38 (437)
+..-+.+|.+||+.|+.+++
T Consensus 32 v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555444
No 58
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=37.55 E-value=22 Score=27.68 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 013738 18 ALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 18 ~l~~~~~~l~~~~~~l~~~~~ 38 (437)
.+..|+|++|.+|+.|+.+++
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~ 24 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLS 24 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHH
Confidence 445566666666665555554
No 59
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=37.22 E-value=39 Score=33.48 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013738 6 QELISSLQSQLEALQNRVKELEADNAKLLSKL 37 (437)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 37 (437)
+..|..|+..++.|..+|++||.+++.+.+.+
T Consensus 29 ~~~I~~Lq~~le~l~~KIq~Le~~v~~~~~~~ 60 (328)
T 1fzc_B 29 PTNLRVLRSILENLRSKIQKLESDVSAQMEYC 60 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677788999999999999999998776654
No 60
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=35.85 E-value=56 Score=25.98 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
+-|..|+.+...|..-+.+|..+++.|+.+|++
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666667777777788888888887764
No 61
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=35.66 E-value=70 Score=23.46 Aligned_cols=27 Identities=33% Similarity=0.279 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKL 37 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~ 37 (437)
.|+.+-..|...|..|+.|+..|+.++
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666666666666665543
No 62
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.55 E-value=70 Score=23.60 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
+.+..|+..++.|...-.+|..++..|..++.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666665544
No 63
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=35.15 E-value=61 Score=20.95 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013738 12 LQSQLEALQNRVKELEADNAKLLSK 36 (437)
Q Consensus 12 ~~~~~~~l~~~~~~l~~~~~~l~~~ 36 (437)
|+.++..|..-||+|...+.+|...
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555543
No 64
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=34.54 E-value=67 Score=25.08 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 14 ~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
.-+..|...+++|+++++.|+.++++
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888999999999999888765
No 65
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=33.99 E-value=48 Score=21.33 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 013738 16 LEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 16 ~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
+++|.+.|-+-|+||-+|.....
T Consensus 3 vaqlekevaqaeaenyqleqeva 25 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVA 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566666666666666665544
No 66
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=33.94 E-value=76 Score=20.40 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLS 35 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~ 35 (437)
.|..++.+|...|-.|.-|.+-|++
T Consensus 6 alkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5666666666666666666666653
No 67
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=33.87 E-value=54 Score=25.28 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
+-|..|+.++..|......|..||+.|+.++..
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666777777766655
No 68
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=32.26 E-value=53 Score=26.00 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
.++-+++.|-.+|.+||++++.|..+++.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35678899999999999999999998875
No 69
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=32.07 E-value=81 Score=24.81 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLSLCR 41 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 41 (437)
++..-...|+.||.||-.|..-|+.++..|+
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455667889999999999999999888765
No 70
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=31.93 E-value=22 Score=26.50 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 013738 21 NRVKELEADNAKLLSKLS 38 (437)
Q Consensus 21 ~~~~~l~~~~~~l~~~~~ 38 (437)
.+|.+||++++.|.++|+
T Consensus 49 ~~~~~Le~ri~~Le~~l~ 66 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLT 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555444
No 71
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.76 E-value=78 Score=23.05 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 9 ISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 9 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
+-.|.+++..|-.+|.+|..++.-|++.+..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ 36 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQA 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777888888888877777776653
No 72
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=31.33 E-value=53 Score=21.80 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 013738 18 ALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 18 ~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
+|-.||.||=.+|..|.+++..
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~R 25 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 6788999999999999887654
No 73
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=31.30 E-value=55 Score=21.06 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 15 QLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 15 ~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
++.+|..|||.|.+.|---+...+
T Consensus 2 evqalkkrvqalkarnyaakqkvq 25 (33)
T 1fmh_B 2 EVQALKKRVQALKARNYAAKQKVQ 25 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHH
Confidence 467899999999998865555443
No 74
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.39 E-value=96 Score=22.97 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
.|..+-+.|...|..|+.|+++|+..+.
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666666666543
No 75
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=30.29 E-value=75 Score=25.86 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
....++.+|..|++.||.++.++..+|..
T Consensus 41 ~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999988887765
No 76
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=30.21 E-value=34 Score=33.83 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013738 7 ELISSLQSQLEALQNRVKELEADNAKLLSK 36 (437)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 36 (437)
..|..|+..++.|..+|++||.++..+...
T Consensus 28 ~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~ 57 (323)
T 1lwu_B 28 GSLRSMKSVLEHLRAKMQRMEEAIKTQKEL 57 (323)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777777777777777777666554
No 77
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=29.62 E-value=73 Score=20.57 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013738 7 ELISSLQSQLEALQNRVKELEADNA 31 (437)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~l~~~~~ 31 (437)
|.++.|..-+..|..||..||..++
T Consensus 6 e~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566788888888889998888775
No 78
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.78 E-value=74 Score=23.13 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013738 6 QELISSLQSQLEALQNRVKELEADNAKLLSKL 37 (437)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 37 (437)
.+-+..|+.+++.|...-..|..++..|+..+
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677777777777777777777776644
No 79
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=28.67 E-value=27 Score=27.56 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013738 14 SQLEALQNRVKELEADNA 31 (437)
Q Consensus 14 ~~~~~l~~~~~~l~~~~~ 31 (437)
.....+..||+|||.|+.
T Consensus 58 ~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 58 QAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333444444444444443
No 80
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=28.66 E-value=76 Score=27.29 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 013738 17 EALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 17 ~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
..|..+|++|+.++++|...++
T Consensus 19 ~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 19 SALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444443
No 81
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=28.43 E-value=57 Score=28.33 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 12 LQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 12 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
+...++.|..++++||.++++|++++..
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788888899999999999888765
No 82
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=28.15 E-value=41 Score=24.92 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013738 13 QSQLEALQNRVKELEADNAKLLS 35 (437)
Q Consensus 13 ~~~~~~l~~~~~~l~~~~~~l~~ 35 (437)
...++.|.+||.+||..++.|.+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999988765
No 83
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=28.13 E-value=74 Score=24.54 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013738 14 SQLEALQNRVKELEADNAKLLSK 36 (437)
Q Consensus 14 ~~~~~l~~~~~~l~~~~~~l~~~ 36 (437)
.-+..|..++++|++++++|+.+
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556677777777777776653
No 84
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.93 E-value=63 Score=26.64 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013738 20 QNRVKELEADNAKLLSK 36 (437)
Q Consensus 20 ~~~~~~l~~~~~~l~~~ 36 (437)
-.||.+||+|+.+|+.+
T Consensus 64 ~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 64 DARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34777777777777653
No 85
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=26.89 E-value=1e+02 Score=19.57 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013738 12 LQSQLEALQNRVKELEADNAKL 33 (437)
Q Consensus 12 ~~~~~~~l~~~~~~l~~~~~~l 33 (437)
++..-++|..++|.||..++-|
T Consensus 6 lekkcaalesklqalekkleal 27 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666665554
No 86
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.89 E-value=1.3e+02 Score=23.87 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
+.++++..-..|-++|+.|+++|+.++..
T Consensus 42 ~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 42 NFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666677777777666554
No 87
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=23.60 E-value=66 Score=24.57 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013738 13 QSQLEALQNRVKELEADNAKLL 34 (437)
Q Consensus 13 ~~~~~~l~~~~~~l~~~~~~l~ 34 (437)
...++.|..||.+||..+++|.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3467888888888888888773
No 88
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.32 E-value=84 Score=31.04 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013738 8 LISSLQSQLEALQNRVKELEADNAKLLSKL 37 (437)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 37 (437)
.|..|+.+++.+..+|++|+.++.+|.+++
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555443
No 89
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=23.27 E-value=1.2e+02 Score=24.08 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013738 17 EALQNRVKELEADNAKLLS 35 (437)
Q Consensus 17 ~~l~~~~~~l~~~~~~l~~ 35 (437)
..|+-.|+++.-++++|+.
T Consensus 37 ~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 37 DSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 3333333444444444443
No 90
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.10 E-value=76 Score=30.01 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 16 LEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 16 ~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
++....++++|++||++|++.|..
T Consensus 38 l~~~~~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 38 LAQLESEVADLKKENKDLKESLDI 61 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344456777888899999887764
No 91
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.02 E-value=66 Score=26.56 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLS 35 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~ 35 (437)
.|+.+...|.+++++|+.|+++|++
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566666677777777777776654
No 92
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.47 E-value=61 Score=31.98 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013738 10 SSLQSQLEALQNRVKELEADNAKLLSK 36 (437)
Q Consensus 10 ~~~~~~~~~l~~~~~~l~~~~~~l~~~ 36 (437)
.+.+.++..|...+++|++++++|+++
T Consensus 14 l~~~~~i~~L~~~l~~~~~ki~~L~~~ 40 (319)
T 1fzc_C 14 LTHDSSIRYLQEIYNSNNQKIVNLKEK 40 (319)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555543
No 93
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=22.22 E-value=97 Score=26.61 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
.+-.++|.|-+++++|-+++++|..|.+.
T Consensus 102 ~~laqLe~ls~qL~~ls~~v~~L~~q~~~ 130 (140)
T 3iyn_Q 102 ALLAQLDSLTRELNVVSQQLLDLRQQVSA 130 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777888888888877766554
No 94
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=22.05 E-value=1.3e+02 Score=19.14 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHh
Q 013738 23 VKELEADNAKLLSKL 37 (437)
Q Consensus 23 ~~~l~~~~~~l~~~~ 37 (437)
+-.||+||.+|+...
T Consensus 8 lasleaenkqlkakv 22 (31)
T 1p9i_A 8 LASLEAENKQLKAKV 22 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555555543
No 95
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.96 E-value=1.6e+02 Score=22.81 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 013738 17 EALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 17 ~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
-+.-.+|++||.+++...+.++.
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~ 58 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQM 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445788888888888777765
No 96
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.58 E-value=1.6e+02 Score=22.71 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 13 QSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 13 ~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
..-+..|..++++|+.++.+|+.+...
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~ 72 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNAL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888877654
No 97
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=21.06 E-value=1.6e+02 Score=24.20 Aligned_cols=28 Identities=11% Similarity=0.382 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013738 11 SLQSQLEALQNRVKELEADNAKLLSKLS 38 (437)
Q Consensus 11 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 38 (437)
....++++|..++=-||.|+++|+.-+.
T Consensus 80 q~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 80 QIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4456777777888888888888877654
No 98
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.81 E-value=48 Score=20.62 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhh
Q 013738 25 ELEADNAKLLSKLS 38 (437)
Q Consensus 25 ~l~~~~~~l~~~~~ 38 (437)
.|.++|++|++++.
T Consensus 4 rlkqknarlkqeia 17 (28)
T 3ra3_B 4 RLKQKNARLKQEIA 17 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHH
Confidence 34455555555443
No 99
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=20.81 E-value=1.5e+02 Score=21.80 Aligned_cols=28 Identities=36% Similarity=0.464 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 12 LQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 12 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
+-.-+=+|.+.|++|.+|+.+|+.-+..
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345668889999999999999876654
No 100
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=20.50 E-value=1.1e+02 Score=18.98 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013738 16 LEALQNRVKELEADNAKLLSKL 37 (437)
Q Consensus 16 ~~~l~~~~~~l~~~~~~l~~~~ 37 (437)
+-.|-.-|+.||.|+-+|.-+.
T Consensus 3 vykldanvkrlekevgklegev 24 (28)
T 4dac_A 3 VYKLDANVKRLEKEVGKLEGEV 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeccccHHHHHHHHhhhhhhh
Confidence 3456677888888888886543
No 101
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=20.45 E-value=1.2e+02 Score=25.29 Aligned_cols=36 Identities=31% Similarity=0.264 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013738 4 AKQELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (437)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 39 (437)
||.|-++......+.|.++++++...+++|...|+.
T Consensus 64 g~~e~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~~ 99 (109)
T 2fcw_A 64 GDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSG 99 (109)
T ss_dssp TCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667666677888999999999999998887765
No 102
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=20.18 E-value=1.6e+02 Score=22.88 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013738 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSLCR 41 (437)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 41 (437)
+....++.+.+.|..++.+|+.-.+.|...+..|.
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555677777778888888877777777777654
No 103
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.07 E-value=94 Score=26.18 Aligned_cols=32 Identities=6% Similarity=0.210 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013738 6 QELISSLQSQLEALQNRVKELEADNAKLLSKL 37 (437)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 37 (437)
++.+..-+.++..|+..|+.|+.|++-|+++-
T Consensus 28 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~ 59 (129)
T 3tnu_B 28 GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQC 59 (129)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444556667777777777777777666543
Done!