RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 013738
         (437 letters)



>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia
           coli [TaxId: 562]}
          Length = 264

 Score =  100 bits (250), Expect = 8e-25
 Identities = 48/264 (18%), Positives = 87/264 (32%), Gaps = 19/264 (7%)

Query: 91  KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
              +AL + Y G ++YG+     +  +V+ ++ KAL +        +       GRTD G
Sbjct: 3   VYKIALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQ-----VANEPITVFCAGRTDAG 56

Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
           V   GQV+     +  K+                         V +    +         
Sbjct: 57  VHGTGQVVHFETTALRKDAAWTLGVNA---NLPGDIAVRWVKTVPDDFHARFSATARRYR 113

Query: 211 APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRH 270
               ++ R            + E L+   M  A +  +GE+DF +F  +   +   ++  
Sbjct: 114 -YIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNV 172

Query: 271 VTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
           +                   + I+ +AF+ H VR +V  L  +G   +    I  LL   
Sbjct: 173 M-------HINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAK 225

Query: 331 GIPRKPQYNMAPEIPLVLQSCDFD 354
              R      A    L L + D+ 
Sbjct: 226 --DRTLAAATAKAEGLYLVAVDYP 247


>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 386

 Score = 26.2 bits (57), Expect = 9.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 3   EAKQELISSLQSQLEALQNRVKELEADNAK 32
           E K+ LI  LQ  +   Q R KE+  +  K
Sbjct: 348 ELKKALIEVLQPLIAEHQARRKEVTDEIVK 377


>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human
           papillomavirus type 16 [TaxId: 333760]}
          Length = 455

 Score = 26.2 bits (58), Expect = 9.9
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 6/34 (17%)

Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKI 293
              N   Y RH   +++   +I     QLC I +
Sbjct: 337 KNTNFKEYLRHGEEYDLQ--FIF----QLCKITL 364


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,586,001
Number of extensions: 74721
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 5
Length of query: 437
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 349
Effective length of database: 1,199,356
Effective search space: 418575244
Effective search space used: 418575244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)