BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013739
         (437 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TYG|A Chain A, Structure Of The Thiazole SynthaseTHIS COMPLEX
 pdb|1TYG|C Chain C, Structure Of The Thiazole SynthaseTHIS COMPLEX
          Length = 253

 Score = 32.3 bits (72), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 300 VMDDSFTMMPFTSDKPAFEESLP-----ASMDGQKPQGRESNLLNPKNL 343
           ++++ F ++P+TSD       L      A M G  P G    +LNP NL
Sbjct: 120 LLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSGQGILNPLNL 168


>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
           Trichoderma Reesei
 pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
           Trichoderma Reesei
          Length = 714

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 60  ANSPGGPS----STMFATGPYAHETQLVSPPVFSTFTTEPSTAPLTPPPEL 106
           A  PGGPS    +    T   A+  Q+    V   + T PS+AP TPP +L
Sbjct: 602 AVVPGGPSDLFQNVATVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQL 652


>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
           Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
           Resolution.
 pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
           Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
           Resolution
          Length = 713

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 60  ANSPGGPS----STMFATGPYAHETQLVSPPVFSTFTTEPSTAPLTPPPEL 106
           A  PGGPS    +    T   A+  Q+    V   + T PS+AP TPP +L
Sbjct: 601 AVVPGGPSDLFQNVATVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQL 651


>pdb|2A4V|A Chain A, Crystal Structure Of A Truncated Mutant Of Yeast Nuclear
           Thiol Peroxidase
          Length = 159

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 251 VYPNGANGNQNRHTKSPKQDVEELEAYRASFGFSADEIITTPQY 294
           VYP  +     R     + + +EL+ Y A FG SAD + +  ++
Sbjct: 42  VYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKF 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.128    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,972,421
Number of Sequences: 62578
Number of extensions: 544912
Number of successful extensions: 791
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 10
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)