BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013739
         (437 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SRE5|Y1666_ARATH Uncharacterized protein At1g76660 OS=Arabidopsis thaliana
           GN=At1g76660 PE=1 SV=1
          Length = 431

 Score =  461 bits (1185), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 259/435 (59%), Positives = 307/435 (70%), Gaps = 51/435 (11%)

Query: 1   MPEG-NAPAAQPNGPQAAGLPNQTTT--LAPSLLAPPSSPASFTNSALPSTAQSPSCFLS 57
           +PEG N  A+QPNG   AG+ N      +  SLLAPPSSPASFTNSALPST QSP+C+LS
Sbjct: 36  IPEGGNVSASQPNGAHQAGVLNNQAAGGINLSLLAPPSSPASFTNSALPSTTQSPNCYLS 95

Query: 58  LSANSPGGPSSTMFATGPYAHETQLVSPPVFSTFTTEPSTAPLTPPPELAHLTTPSSPDV 117
           L+ANSPGGPSS+M+ATGPYAHETQLVSPPVFSTFTTEPSTAP TPPPELA LT PSSPDV
Sbjct: 96  LAANSPGGPSSSMYATGPYAHETQLVSPPVFSTFTTEPSTAPFTPPPELARLTAPSSPDV 155

Query: 118 PFARFLTSSMDLNGTDKANYIAANDLQATYSLYPGSPPSSLISPISRTSGECLSSSFPER 177
           P+ARFLTSSMDL  + K +Y   NDLQATYSLYPGSP S+L SPISR SG+ L       
Sbjct: 156 PYARFLTSSMDLKNSGKGHY---NDLQATYSLYPGSPASALRSPISRASGDGL------- 205

Query: 178 EFPPQWDPTVSPQNGKYSRSGSGRLYTHDTTGGSRVSQDTNFFCPATFAQFYLDHDSPFP 237
                    +SPQNGK SRS SG  + +DT G S   Q++NFFCP TFA+FYLDHD   P
Sbjct: 206 ---------LSPQNGKCSRSDSGNTFGYDTNGVSTPLQESNFFCPETFAKFYLDHDPSVP 256

Query: 238 HTGGRLSVSKDSDVYP-NG-ANGNQNRHTKSPKQDVEELEAYRASFGFSADEIITTPQYV 295
             GGRLSVSKDSDVYP NG  NGNQNR  +SPKQD+EELEAYRASFGFSADEIITT QYV
Sbjct: 257 QNGGRLSVSKDSDVYPTNGYGNGNQNRQNRSPKQDMEELEAYRASFGFSADEIITTSQYV 316

Query: 296 EITDVMDDSFTMMPFTSDKPAFEESLPASMDGQKPQGRESNLLNPKNLKSDSDLMNGGIH 355
           EITDVMD SF    ++              DGQK   RE+NLL+  + KS++DL +  + 
Sbjct: 317 EITDVMDGSFNTSAYSPS------------DGQKLLRREANLLSQTSPKSEADLDSQVVD 364

Query: 356 HELTESSDGCEDNKPKRQSGDVSGASTPGNQVLTDEEDIFSKMRTSRNSRKYHQGLSCSD 415
            +  +SS+  +D+K +             N++  DEE + S++ + + SR YH  +S SD
Sbjct: 365 FQSPKSSNSYKDHKQR-------------NRIHADEEALLSRVGSVKGSRSYH--ISSSD 409

Query: 416 AEIDYRRGRSLREGK 430
           AE++YRRGRSLRE +
Sbjct: 410 AEVEYRRGRSLRESR 424


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.127    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,015,517
Number of Sequences: 539616
Number of extensions: 8766492
Number of successful extensions: 25063
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 629
Number of HSP's that attempted gapping in prelim test: 22480
Number of HSP's gapped (non-prelim): 2387
length of query: 437
length of database: 191,569,459
effective HSP length: 120
effective length of query: 317
effective length of database: 126,815,539
effective search space: 40200525863
effective search space used: 40200525863
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)