Query 013739
Match_columns 437
No_of_seqs 42 out of 44
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 06:55:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15336 Auts2: Autism suscept 46.0 25 0.00054 34.4 3.7 33 70-105 51-84 (212)
2 PRK11507 ribosome-associated p 28.7 23 0.00051 29.2 0.5 19 412-430 39-57 (70)
3 PF15417 DUF4624: Domain of un 20.8 58 0.0013 29.9 1.6 36 237-300 33-69 (132)
4 PRK10984 DNA-binding transcrip 12.6 70 0.0015 29.3 -0.0 10 72-81 18-27 (127)
5 PF07417 Crl: Transcriptional 12.6 72 0.0016 29.2 0.1 11 71-81 15-25 (125)
6 PF13275 S4_2: S4 domain; PDB: 11.5 99 0.0021 25.0 0.5 15 415-429 38-52 (65)
7 PF05559 DUF763: Protein of un 11.3 56 0.0012 33.6 -1.1 55 248-308 82-138 (319)
8 PF12936 Kri1_C: KRI1-like fam 9.4 1E+02 0.0022 26.5 -0.1 13 279-291 37-49 (93)
9 COG2501 S4-like RNA binding pr 8.8 1.3E+02 0.0028 25.2 0.3 16 415-430 42-57 (73)
10 PF12174 RST: RCD1-SRO-TAF4 (R 8.0 2.1E+02 0.0046 23.3 1.2 16 110-125 2-17 (70)
No 1
>PF15336 Auts2: Autism susceptibility gene 2 protein
Probab=46.02 E-value=25 Score=34.44 Aligned_cols=33 Identities=36% Similarity=0.772 Sum_probs=26.0
Q ss_pred ceeeccCCCCccccCCCccccc-ccCCCCCCCCCCcc
Q 013739 70 MFATGPYAHETQLVSPPVFSTF-TTEPSTAPLTPPPE 105 (437)
Q Consensus 70 mFAiGPYAhEtQLVSPPvFStf-TTEPSTAPfTPPpE 105 (437)
+|+--+|.|+ |..| +||+. ++.|+++||.|+|-
T Consensus 51 ~f~g~~~phd--LarP-Lfs~tG~~hPs~~Pfgp~ph 84 (212)
T PF15336_consen 51 VFGGLHYPHD--LARP-LFSATGAAHPSANPFGPSPH 84 (212)
T ss_pred ccCCCCCccc--cCcc-ccCCCCCCCCCCCCCCCCCC
Confidence 6776778887 4555 88876 89999999998874
No 2
>PRK11507 ribosome-associated protein; Provisional
Probab=28.67 E-value=23 Score=29.19 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=15.2
Q ss_pred CccccchhhcccccccccC
Q 013739 412 SCSDAEIDYRRGRSLREGK 430 (437)
Q Consensus 412 scSDAEidYRRgRSLRE~k 430 (437)
=-=+-|||.||||=||.|.
T Consensus 39 V~VNGeve~rRgkKl~~GD 57 (70)
T PRK11507 39 VKVDGAVETRKRCKIVAGQ 57 (70)
T ss_pred eEECCEEecccCCCCCCCC
Confidence 3347799999999999763
No 3
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=20.80 E-value=58 Score=29.88 Aligned_cols=36 Identities=39% Similarity=0.562 Sum_probs=24.7
Q ss_pred CCCCCcc-cccccCccccCCCCCCCccCCCCCCcchHHHhhceeeeeecchhhcccCceeccccc
Q 013739 237 PHTGGRL-SVSKDSDVYPNGANGNQNRHTKSPKQDVEELEAYRASFGFSADEIITTPQYVEITDV 300 (437)
Q Consensus 237 p~nGGrl-svsr~sdv~~~~~ng~q~~~~ks~kqd~e~~~~~RaSFelsadei~tt~r~ve~~~v 300 (437)
|+-.||| |||+|.|+ | +.-++|.+.+|-.+ ||||+-
T Consensus 33 PF~N~rLFcVs~Die~----------------------L-~aEv~f~mDGe~~i-----VEiKd~ 69 (132)
T PF15417_consen 33 PFENGRLFCVSEDIEA----------------------L-DAEVYFQMDGESGI-----VEIKDR 69 (132)
T ss_pred ccccceEEEEecchhe----------------------e-eeEEEEEEcCccce-----EEeccC
Confidence 6777776 88988433 2 33578888888766 777763
No 4
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=12.57 E-value=70 Score=29.31 Aligned_cols=10 Identities=60% Similarity=0.923 Sum_probs=6.6
Q ss_pred eeccCCCCcc
Q 013739 72 ATGPYAHETQ 81 (437)
Q Consensus 72 AiGPYAhEtQ 81 (437)
|||||-+|-|
T Consensus 18 alGPYlRE~q 27 (127)
T PRK10984 18 ALGPYLREGQ 27 (127)
T ss_pred HhCchhchhc
Confidence 5666666665
No 5
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria [].These proteins bind to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. They also stimulate RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.; GO: 0016987 sigma factor activity, 0045893 positive regulation of transcription, DNA-dependent, 0005737 cytoplasm; PDB: 3RPJ_A.
Probab=12.56 E-value=72 Score=29.16 Aligned_cols=11 Identities=55% Similarity=0.770 Sum_probs=6.4
Q ss_pred eeeccCCCCcc
Q 013739 71 FATGPYAHETQ 81 (437)
Q Consensus 71 FAiGPYAhEtQ 81 (437)
=|||||-+|-|
T Consensus 15 ~alGPYlRE~q 25 (125)
T PF07417_consen 15 AALGPYLREGQ 25 (125)
T ss_dssp HTT-TTB-GGG
T ss_pred HhhCchhcccc
Confidence 36788887776
No 6
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=11.48 E-value=99 Score=25.02 Aligned_cols=15 Identities=47% Similarity=0.973 Sum_probs=5.4
Q ss_pred ccchhhccccccccc
Q 013739 415 DAEIDYRRGRSLREG 429 (437)
Q Consensus 415 DAEidYRRgRSLRE~ 429 (437)
+-|++.||||=||.|
T Consensus 38 NGe~e~rrg~Kl~~G 52 (65)
T PF13275_consen 38 NGEVETRRGKKLRPG 52 (65)
T ss_dssp TTB----SS----SS
T ss_pred CCEEccccCCcCCCC
Confidence 568999999999975
No 7
>PF05559 DUF763: Protein of unknown function (DUF763); InterPro: IPR008482 This family consists of several uncharacterised bacterial and archaeal proteins of unknown function.
Probab=11.34 E-value=56 Score=33.65 Aligned_cols=55 Identities=27% Similarity=0.608 Sum_probs=42.5
Q ss_pred cCccccCCCCCCCccCCCCCCcchHHHhhceeeeeecchhhcccCceecccc--cccCccccc
Q 013739 248 DSDVYPNGANGNQNRHTKSPKQDVEELEAYRASFGFSADEIITTPQYVEITD--VMDDSFTMM 308 (437)
Q Consensus 248 ~sdv~~~~~ng~q~~~~ks~kqd~e~~~~~RaSFelsadei~tt~r~ve~~~--v~dd~F~~~ 308 (437)
+-.++.-|+-|... -+..+||+..-.-|+|.+++++.++|-+.+-| ++.|+|.+-
T Consensus 82 dlGi~V~GGKG~~s------r~tP~El~~~~~~~gld~~~L~~~SRL~AKVDn~alQDGy~LY 138 (319)
T PF05559_consen 82 DLGIYVAGGKGKHS------RKTPEELEEIAERFGLDAEELVRASRLVAKVDNAALQDGYQLY 138 (319)
T ss_pred cCCEEEecCCchhh------hcCHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhHhhcccccce
Confidence 33445555555443 33478999999999999999999999999888 899999863
No 8
>PF12936 Kri1_C: KRI1-like family C-terminal; InterPro: IPR024626 The yeast member of the Kri1-like family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus []. This entry represents the C-terminal domain of this protein family.
Probab=9.40 E-value=1e+02 Score=26.49 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=10.9
Q ss_pred eeeeecchhhccc
Q 013739 279 ASFGFSADEIITT 291 (437)
Q Consensus 279 aSFelsadei~tt 291 (437)
.+||||++||..+
T Consensus 37 ~~fGLt~~eIL~a 49 (93)
T PF12936_consen 37 NSFGLTTEEILMA 49 (93)
T ss_pred ccCCCCHHHHHhC
Confidence 4799999999943
No 9
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=8.75 E-value=1.3e+02 Score=25.22 Aligned_cols=16 Identities=44% Similarity=0.989 Sum_probs=13.5
Q ss_pred ccchhhcccccccccC
Q 013739 415 DAEIDYRRGRSLREGK 430 (437)
Q Consensus 415 DAEidYRRgRSLRE~k 430 (437)
+-|+|=||||=||.|.
T Consensus 42 NGe~EtRRgkKlr~gd 57 (73)
T COG2501 42 NGEVETRRGKKLRDGD 57 (73)
T ss_pred CCeeeeccCCEeecCC
Confidence 5689999999999763
No 10
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=8.00 E-value=2.1e+02 Score=23.29 Aligned_cols=16 Identities=31% Similarity=0.723 Sum_probs=13.7
Q ss_pred CCCCCCCchhhhhhcc
Q 013739 110 TTPSSPDVPFARFLTS 125 (437)
Q Consensus 110 TTPSSPeVPFAqlL~S 125 (437)
..|.||-|||.-||..
T Consensus 2 ~~P~sp~~~F~~L~~~ 17 (70)
T PF12174_consen 2 RRPTSPWMPFPMLFSA 17 (70)
T ss_pred CCCCCCcccHHHHHHH
Confidence 4688999999999865
Done!