Query 013739
Match_columns 437
No_of_seqs 42 out of 44
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 16:13:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rpj_A Curlin genes transcript 11.3 57 0.0019 28.9 0.3 11 71-81 20-30 (134)
2 3j20_J 30S ribosomal protein S 5.5 2.9E+02 0.01 23.9 2.1 37 399-435 18-67 (127)
3 2le2_A P56; UDG inhibition, DN 5.3 65 0.0022 24.8 -1.8 17 405-421 25-41 (56)
4 3pes_A Uncharacterized protein 4.9 1.8E+02 0.0061 24.0 0.4 19 407-425 40-58 (85)
5 1s4k_A Putative cytoplasmic pr 3.5 1.7E+02 0.0058 25.4 -0.8 24 270-296 4-27 (120)
6 4aqz_A PILQ, type IV pilus bio 3.5 2.9E+02 0.0099 23.9 0.6 17 409-425 28-44 (138)
7 3or1_C Sulfite reductase GAMA; 3.1 3E+02 0.01 22.9 0.3 15 143-157 77-91 (105)
8 2epi_A UPF0045 protein MJ1052; 3.0 2.9E+02 0.0099 22.3 0.1 16 412-427 74-89 (100)
9 3tg0_A Apase, alkaline phospha 3.0 3.5E+02 0.012 27.5 0.7 10 70-79 419-428 (449)
10 1lxn_A Hypothetical protein MT 3.0 2.9E+02 0.01 22.1 0.1 16 412-427 72-87 (99)
No 1
>3rpj_A Curlin genes transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.90A {Proteus mirabilis}
Probab=11.35 E-value=57 Score=28.90 Aligned_cols=11 Identities=45% Similarity=0.758 Sum_probs=7.9
Q ss_pred eeeccCCCCcc
Q 013739 71 FATGPYAHETQ 81 (437)
Q Consensus 71 FAiGPYAhEtQ 81 (437)
=|||||-+|-|
T Consensus 20 ~alGPYlRE~q 30 (134)
T 3rpj_A 20 AQIGPYIREQQ 30 (134)
T ss_dssp HTTCTTBCGGG
T ss_pred HHhCchhchhh
Confidence 46777777776
No 2
>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=5.50 E-value=2.9e+02 Score=23.90 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=25.3
Q ss_pred cccccccccCCCCCccccchh------hccc-------ccccccCCCCcc
Q 013739 399 RTSRNSRKYHQGLSCSDAEID------YRRG-------RSLREGKGDFSW 435 (437)
Q Consensus 399 ~ss~~~rKy~~g~scSDAEid------YRRg-------RSLRE~kg~~~w 435 (437)
...|..|||.+|--.....|. -.|. |.||-..+-|+|
T Consensus 18 ~~~rkKRK~ElGr~pa~T~ig~~~r~~~vR~rGGN~K~ralr~~~aNvs~ 67 (127)
T 3j20_J 18 VLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANVFD 67 (127)
T ss_dssp CCCSCCCGGGCBCCCCCCEECSSCEEEEEECTTSCEEEEEEEESBCCCCC
T ss_pred cccccchhhhcCCCccccEeCCceEEEEEEccCCceEEEEEEeccceEEe
Confidence 344568999999866443332 3333 568999999999
No 3
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=5.29 E-value=65 Score=24.75 Aligned_cols=17 Identities=53% Similarity=0.786 Sum_probs=14.5
Q ss_pred cccCCCCCccccchhhc
Q 013739 405 RKYHQGLSCSDAEIDYR 421 (437)
Q Consensus 405 rKy~~g~scSDAEidYR 421 (437)
-.||-|||-||-||-|-
T Consensus 25 ~e~h~glslsdfev~yg 41 (56)
T 2le2_A 25 YEYHKGLSLSDFEVLYG 41 (56)
T ss_dssp EEEEEEECHHHHHHHHH
T ss_pred eeeecCcccccEEEEeC
Confidence 45899999999999884
No 4
>3pes_A Uncharacterized protein GP49; PSI2, structural genomics, protein structure initiative, MID center for structural genomics, MCSG; 1.30A {Pseudomonas phage yua}
Probab=4.91 E-value=1.8e+02 Score=23.96 Aligned_cols=19 Identities=37% Similarity=0.657 Sum_probs=15.8
Q ss_pred cCCCCCccccchhhccccc
Q 013739 407 YHQGLSCSDAEIDYRRGRS 425 (437)
Q Consensus 407 y~~g~scSDAEidYRRgRS 425 (437)
|+.-.-|+|=||-=||||-
T Consensus 40 Y~~e~~~~~W~i~DRRGR~ 58 (85)
T 3pes_A 40 YPAEGGCGEWEVRDRRGRP 58 (85)
T ss_dssp BCCBCCEEEEEEECTTSCB
T ss_pred ccCCCCccceeeeeccCCc
Confidence 5554789999999999984
No 5
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=3.52 E-value=1.7e+02 Score=25.44 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=20.8
Q ss_pred chHHHhhceeeeeecchhhcccCceec
Q 013739 270 DVEELEAYRASFGFSADEIITTPQYVE 296 (437)
Q Consensus 270 d~e~~~~~RaSFelsadei~tt~r~ve 296 (437)
+..||.+-|.-|+||.+|++ .+++
T Consensus 4 n~~ELkalR~ilgLt~~EaA---~~i~ 27 (120)
T 1s4k_A 4 NALELQALRRIFDMTIEECT---IYIT 27 (120)
T ss_dssp CHHHHHHHHHHTTCCHHHHH---HHTS
T ss_pred CHHHHHHHHHHhCCCHHHHH---HHHh
Confidence 47899999999999999999 5554
No 6
>4aqz_A PILQ, type IV pilus biogenesis and competence protein P; transport protein, secretin, type IV PILI, type II secretion; NMR {Neisseria meningitidis}
Probab=3.48 E-value=2.9e+02 Score=23.89 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=11.6
Q ss_pred CCCCccccchhhccccc
Q 013739 409 QGLSCSDAEIDYRRGRS 425 (437)
Q Consensus 409 ~g~scSDAEidYRRgRS 425 (437)
+|...+=..||||||..
T Consensus 28 ~g~g~~i~~IDFrRg~~ 44 (138)
T 4aqz_A 28 MGRGSKQTNIDFRKDGK 44 (138)
T ss_dssp SCSSCSSCEEEEEEETT
T ss_pred cCCccccchhhcccCCC
Confidence 44445556799999853
No 7
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=3.10 E-value=3e+02 Score=22.85 Aligned_cols=15 Identities=33% Similarity=0.820 Sum_probs=11.4
Q ss_pred cccccccCCCCCCCC
Q 013739 143 LQATYSLYPGSPPSS 157 (437)
Q Consensus 143 ~q~sYqlyPGSP~~~ 157 (437)
...-|+|+|+.|+.|
T Consensus 77 ~k~Ly~LFP~gPakq 91 (105)
T 3or1_C 77 LKEIYELFPSGPGKG 91 (105)
T ss_dssp HHHHHHHCTTCTTTT
T ss_pred HHHHHHHCCCCHHHH
Confidence 344689999999755
No 8
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=3.03 E-value=2.9e+02 Score=22.29 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=11.2
Q ss_pred Cccccchhhccccccc
Q 013739 412 SCSDAEIDYRRGRSLR 427 (437)
Q Consensus 412 scSDAEidYRRgRSLR 427 (437)
-.+.--|||||++.++
T Consensus 74 V~~~iKid~R~d~~~~ 89 (100)
T 2epi_A 74 VVSSLKIDERKDKENT 89 (100)
T ss_dssp EEEEEEEEEESSSCCC
T ss_pred EEEEEEEEecCCCCCC
Confidence 4466778899887543
No 9
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli} SCOP: c.76.1.1 PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B 1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A* 1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Probab=3.02 E-value=3.5e+02 Score=27.48 Aligned_cols=10 Identities=40% Similarity=0.507 Sum_probs=9.3
Q ss_pred ceeeccCCCC
Q 013739 70 MFATGPYAHE 79 (437)
Q Consensus 70 mFAiGPYAhE 79 (437)
|||.||.||-
T Consensus 419 v~A~GP~A~~ 428 (449)
T 3tg0_A 419 IAAYGPHAAN 428 (449)
T ss_dssp EEEESTTGGG
T ss_pred EEeecCChhh
Confidence 9999999995
No 10
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=2.98 E-value=2.9e+02 Score=22.14 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=10.9
Q ss_pred Cccccchhhccccccc
Q 013739 412 SCSDAEIDYRRGRSLR 427 (437)
Q Consensus 412 scSDAEidYRRgRSLR 427 (437)
-.+.--|||||++.++
T Consensus 72 v~~~iKid~R~d~~~~ 87 (99)
T 1lxn_A 72 VYTTLKIDDRRDADRG 87 (99)
T ss_dssp EEEEEEEEEESSSCCC
T ss_pred EEEEEEEEecCCCCCC
Confidence 3466678888886543
Done!