Query 013739
Match_columns 437
No_of_seqs 42 out of 44
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 16:13:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013739.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013739hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k3ta2 d.81.1.1 (A:165-333) G 7.3 52 0.0038 27.1 0.5 8 419-426 46-53 (169)
2 d1rm4a2 d.81.1.1 (A:149-312) G 5.9 66 0.0048 26.4 0.4 7 419-425 43-49 (163)
3 d2g82a2 d.81.1.1 (A:149-310) G 5.8 67 0.0049 26.3 0.4 8 419-426 43-50 (162)
4 d1u8fo2 d.81.1.1 (O:152-315) G 5.7 73 0.0053 26.3 0.6 7 419-425 44-50 (164)
5 d3cmco2 d.81.1.1 (O:149-312) G 5.5 72 0.0052 26.3 0.4 7 419-425 43-49 (163)
6 d1c4oa2 c.37.1.19 (A:410-583) 5.5 63 0.0046 26.4 0.0 18 418-435 120-137 (174)
7 d1obfo2 d.81.1.1 (O:153-314) G 5.4 73 0.0053 26.0 0.4 7 419-425 44-50 (162)
8 d1ojra_ c.74.1.1 (A:) L-rhamnu 5.0 1.5E+02 0.011 24.8 2.3 59 237-320 27-85 (274)
9 d1lxna_ d.58.48.1 (A:) Hypothe 4.9 75 0.0054 24.2 0.1 16 412-427 72-87 (99)
10 d2h9fa1 d.21.1.4 (A:1-182) Hyp 4.3 40 0.0029 28.8 -2.2 14 72-85 110-123 (182)
No 1
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Probab=7.33 E-value=52 Score=27.09 Aligned_cols=8 Identities=50% Similarity=0.987 Sum_probs=6.4
Q ss_pred hhcccccc
Q 013739 419 DYRRGRSL 426 (437)
Q Consensus 419 dYRRgRSL 426 (437)
||||||+-
T Consensus 46 d~Rr~Raa 53 (169)
T d1k3ta2 46 DWRGGRAA 53 (169)
T ss_dssp CTGGGSBG
T ss_pred CCcCcccc
Confidence 78999973
No 2
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=5.87 E-value=66 Score=26.43 Aligned_cols=7 Identities=57% Similarity=0.971 Sum_probs=6.1
Q ss_pred hhccccc
Q 013739 419 DYRRGRS 425 (437)
Q Consensus 419 dYRRgRS 425 (437)
||||||+
T Consensus 43 d~rr~Ra 49 (163)
T d1rm4a2 43 DLRRARA 49 (163)
T ss_dssp STTTTSC
T ss_pred cccccch
Confidence 7999996
No 3
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Probab=5.80 E-value=67 Score=26.30 Aligned_cols=8 Identities=50% Similarity=0.800 Sum_probs=6.6
Q ss_pred hhcccccc
Q 013739 419 DYRRGRSL 426 (437)
Q Consensus 419 dYRRgRSL 426 (437)
||||||+-
T Consensus 43 d~rr~Rsa 50 (162)
T d2g82a2 43 DLRRARAA 50 (162)
T ss_dssp STTTTSBG
T ss_pred Cccccchh
Confidence 79999963
No 4
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}
Probab=5.67 E-value=73 Score=26.34 Aligned_cols=7 Identities=43% Similarity=0.771 Sum_probs=5.8
Q ss_pred hhccccc
Q 013739 419 DYRRGRS 425 (437)
Q Consensus 419 dYRRgRS 425 (437)
+|||||+
T Consensus 44 ~~Rr~Ra 50 (164)
T d1u8fo2 44 LWRDGRG 50 (164)
T ss_dssp CGGGGSB
T ss_pred ccccCCC
Confidence 5899997
No 5
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Probab=5.51 E-value=72 Score=26.29 Aligned_cols=7 Identities=57% Similarity=0.971 Sum_probs=6.1
Q ss_pred hhccccc
Q 013739 419 DYRRGRS 425 (437)
Q Consensus 419 dYRRgRS 425 (437)
|+||||+
T Consensus 43 d~Rr~Ra 49 (163)
T d3cmco2 43 DLRRARA 49 (163)
T ss_dssp STTTTSB
T ss_pred chhccch
Confidence 8999987
No 6
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=5.49 E-value=63 Score=26.39 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=14.1
Q ss_pred hhhcccccccccCCCCcc
Q 013739 418 IDYRRGRSLREGKGDFSW 435 (437)
Q Consensus 418 idYRRgRSLRE~kg~~~w 435 (437)
+--|.||..|.++|...|
T Consensus 120 ~iq~~GR~gR~~~g~~~~ 137 (174)
T d1c4oa2 120 LIQTIGRAARNARGEVWL 137 (174)
T ss_dssp HHHHHGGGTTSTTCEEEE
T ss_pred HHHHhhhhhhcCCCeeEE
Confidence 445889999999986554
No 7
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}
Probab=5.39 E-value=73 Score=25.95 Aligned_cols=7 Identities=71% Similarity=1.023 Sum_probs=5.9
Q ss_pred hhccccc
Q 013739 419 DYRRGRS 425 (437)
Q Consensus 419 dYRRgRS 425 (437)
||||||+
T Consensus 44 d~r~~Ra 50 (162)
T d1obfo2 44 DLRRARS 50 (162)
T ss_dssp STTTTSC
T ss_pred ccccccc
Confidence 7899986
No 8
>d1ojra_ c.74.1.1 (A:) L-rhamnulose-1-phosphate aldolase {Escherichia coli [TaxId: 562]}
Probab=4.98 E-value=1.5e+02 Score=24.84 Aligned_cols=59 Identities=14% Similarity=0.154 Sum_probs=37.4
Q ss_pred CCCCCcccccccCccccCCCCCCCccCCCCCCcchHHHhhceeeeeecchhhcccCceecccccccCccccccCCCCCCc
Q 013739 237 PHTGGRLSVSKDSDVYPNGANGNQNRHTKSPKQDVEELEAYRASFGFSADEIITTPQYVEITDVMDDSFTMMPFTSDKPA 316 (437)
Q Consensus 237 p~nGGrlsvsr~sdv~~~~~ng~q~~~~ks~kqd~e~~~~~RaSFelsadei~tt~r~ve~~~v~dd~F~~~pf~~~k~~ 316 (437)
..|||-|||.-+ ++++..+|-.|-.....+- --.+....-.|.|.|+|-|..+-.
T Consensus 27 ~~~gGNiSvR~~----------------------~~~i~~~~~~~~~~~~~~~---~~~~~~~l~g~~~lITpSG~~~~~ 81 (274)
T d1ojra_ 27 ERNGGNLTLRLD----------------------DADIAPYHDNFHQQPRYIP---LSQPMPLLANTPFIVTGSGKFFRN 81 (274)
T ss_dssp CTTCCEEEEECC----------------------HHHHGGGGGGSCSSCEEEE---CSSCCGGGTTCEEEEEBTTCCGGG
T ss_pred ccCCCeEEEEcC----------------------ccccccccccccccccccc---cccccccccCCeEEEeCCCcccCc
Confidence 456788887655 7888888877655543221 111122233588999999998887
Q ss_pred cccc
Q 013739 317 FEES 320 (437)
Q Consensus 317 ~e~~ 320 (437)
+...
T Consensus 82 l~~~ 85 (274)
T d1ojra_ 82 VQLD 85 (274)
T ss_dssp TTTC
T ss_pred CCcc
Confidence 7654
No 9
>d1lxna_ d.58.48.1 (A:) Hypothetical protein MTH1187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=4.93 E-value=75 Score=24.17 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=12.0
Q ss_pred Cccccchhhccccccc
Q 013739 412 SCSDAEIDYRRGRSLR 427 (437)
Q Consensus 412 scSDAEidYRRgRSLR 427 (437)
-.+.--|||||++.+|
T Consensus 72 V~t~iKId~R~dk~~~ 87 (99)
T d1lxna_ 72 VYTTLKIDDRRDADRG 87 (99)
T ss_dssp EEEEEEEEEESSSCCC
T ss_pred EEEEEEEeccCCCCCC
Confidence 3466789999988765
No 10
>d2h9fa1 d.21.1.4 (A:1-182) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.29 E-value=40 Score=28.80 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=12.5
Q ss_pred eeccCCCCccccCC
Q 013739 72 ATGPYAHETQLVSP 85 (437)
Q Consensus 72 AiGPYAhEtQLVSP 85 (437)
||||||-|.-||.+
T Consensus 110 aVgpfAie~GLv~~ 123 (182)
T d2h9fa1 110 GAGAFALHAGLVDP 123 (182)
T ss_dssp HHHHHHHHTTCSCG
T ss_pred cccchhhhcCcccc
Confidence 78999999999963
Done!