BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013740
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 151/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+AAA+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQ-SIREK 242
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 243 YKNSKYHGVSLLNPPETL 260
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 151/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+AAA+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQ-SIREK 242
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 243 YKNSKYHGVSLLNPPETL 260
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 151/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+AAA+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQ-SIREK 242
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 243 YKNSKYHGVSLLNPPETL 260
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 151/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+AAA+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQ-SIREK 242
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 243 YKNSKYHGVSLLNPPETL 260
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 151/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+AAA+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQ-SIREK 242
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 243 YKNSKYHGVSLLNPPETL 260
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 151/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+AAA+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQ-SIREK 242
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 243 YKNSKYHGVSLLNPPETL 260
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 151/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+AAA+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ-SIREK 242
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 243 YKNSKYHGVSLLNPPETL 260
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 150/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 4 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 63
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 64 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 123
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 124 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSL 183
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+A A+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 184 IAGAAFHLALYTVTGQS-WPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQ-SIREK 241
Query: 418 FSSHKRGAVALLNPAEYL 435
+ K +V+LLNP E L
Sbjct: 242 YKHSKYHSVSLLNPPETL 259
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 150/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 8 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 67
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 68 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 127
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 128 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 187
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+A A+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 188 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ-SIREK 245
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 246 YKNSKYHGVSLLNPPETL 263
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 150/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 1 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 120
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 121 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSL 180
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+A A+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 181 IAGAAFHLALYTVTGQS-WPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQ-SIREK 238
Query: 418 FSSHKRGAVALLNPAEYL 435
+ K +V+LLNP E L
Sbjct: 239 YKHSKYHSVSLLNPPETL 256
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 150/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 63 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 182
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+A A+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 183 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ-SIREK 240
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 241 YKNSKYHGVSLLNPPETL 258
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 150/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 1 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 120
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 121 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSL 180
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+A A+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 181 IAGAAFHLALYTVTGQS-WPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQ-SIREK 238
Query: 418 FSSHKRGAVALLNPAEYL 435
+ K +V+LLNP E L
Sbjct: 239 YKHSKYHSVSLLNPPETL 256
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 150/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 4 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 63
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 64 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 123
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 124 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 183
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+A A+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 184 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ-SIREK 241
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 242 YKNSKYHGVSLLNPPETL 259
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 150/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 2 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 61
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 62 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 121
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 122 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 181
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+A A+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 182 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ-SIREK 239
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 240 YKNSKYHGVSLLNPPETL 257
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/260 (38%), Positives = 151/260 (58%), Gaps = 3/260 (1%)
Query: 177 LAVVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETL 235
+ V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL
Sbjct: 1 MEVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETL 60
Query: 236 YLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVL 295
+L VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL
Sbjct: 61 HLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVL 120
Query: 296 VMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCP 355
ME +L+ L + L PT FL +Y + ++E+L FL EL + + Y P
Sbjct: 121 RMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLP 180
Query: 356 SMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVY 415
S++A A+ + A T+ W E+L TGY+ E LK C L +L A + Q+ +
Sbjct: 181 SVIAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ-SIR 238
Query: 416 KKFSSHKRGAVALLNPAEYL 435
+K+ + K V+LLNP E L
Sbjct: 239 EKYKNSKYHGVSLLNPPETL 258
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 150/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 1 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 120
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 121 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 180
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+A A+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 181 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ-SIREK 238
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 239 YKNSKYHGVSLLNPPETL 256
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 150/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 1 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 120
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 121 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 180
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+A A+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K
Sbjct: 181 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ-SIREK 238
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 239 YKNSKYHGVSLLNPPETL 256
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 149/256 (58%), Gaps = 3/256 (1%)
Query: 181 EYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTV 239
+Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L V
Sbjct: 1 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 60
Query: 240 NILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEK 299
N +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL ME
Sbjct: 61 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 120
Query: 300 AILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLA 359
+L+ L + L PT FL +Y + ++E+L FL EL + + Y PS++A
Sbjct: 121 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 180
Query: 360 AASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKKFS 419
A+ + A T+ W E+L TGY+ E LK C L +L A + Q+ + +K+
Sbjct: 181 GAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ-SIREKYK 238
Query: 420 SHKRGAVALLNPAEYL 435
+ K V+LLNP E L
Sbjct: 239 NSKYHGVSLLNPPETL 254
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 150/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+AAA+ + A T+ W E+L TGY+ E K C L +L A + Q+ + +K
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLIRKTGYTLETSKPCMLDLHQTYLKAPQHAQQ-SIREK 242
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 243 YKNSKYHGVSLLNPPETL 260
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 150/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
V +Y +DI+ + + E + + YM Q +I MR ILVDWL+EV ++KL ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
VN +DR+LS +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D Y QVL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
E +L+ L + L PT FL +Y + ++E+L FL EL + + Y PS+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
+AAA+ + A T+ W E+L TGY+ E LK L +L A + Q+ + +K
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPMLLDLHQTYLKAPQHAQQ-SIREK 242
Query: 418 FSSHKRGAVALLNPAEYL 435
+ + K V+LLNP E L
Sbjct: 243 YKNSKYHGVSLLNPPETL 260
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 121/211 (57%), Gaps = 3/211 (1%)
Query: 181 EYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVN 240
EYV DIY + + EEE V + + MR IL+DWL++V KF+L+ ET+Y+TV+
Sbjct: 3 EYVKDIYAYLRQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVS 62
Query: 241 ILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKA 300
I+DR++ V ++ LQLVG+++M IA KYEE++ P++ DF ++D Y Q+ ME
Sbjct: 63 IIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMK 122
Query: 301 ILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAA 360
IL L + L P P FL R K D E L +L EL + Y ++ + PS +AA
Sbjct: 123 ILRALNFGLGRPLPLHFLRRASKIG-EVDVEQHTLAKYLMELTMLDY-DMVHFPPSQIAA 180
Query: 361 ASVYAAHCTLNKSPLWTETLKHHTGYSEEQL 391
+ A L+ WT TL+H+ Y+EE L
Sbjct: 181 GAFCLALKILDNGE-WTPTLQHYLSYTEESL 210
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 120/211 (56%), Gaps = 3/211 (1%)
Query: 181 EYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVN 240
EYV DIY + + E V + + MR IL+DWL++V KF+L+ ET+Y+TV+
Sbjct: 5 EYVKDIYAYLRQLEAAQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVS 64
Query: 241 ILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKA 300
I+DR++ +V ++ LQLVG+++M IA KYEE++ P++ DF ++D Y Q+ ME
Sbjct: 65 IIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMK 124
Query: 301 ILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAA 360
IL L + L P P FL R K D E L +L EL + Y ++ + PS +AA
Sbjct: 125 ILRALNFGLGRPLPLHFLRRASKIG-EVDVEQHTLAKYLMELTMLDY-DMVHFPPSQIAA 182
Query: 361 ASVYAAHCTLNKSPLWTETLKHHTGYSEEQL 391
+ A L+ WT TL+H+ Y+EE L
Sbjct: 183 GAFSLALKILDNGE-WTPTLQHYLSYTEESL 212
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 20/222 (9%)
Query: 198 RVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYL-SMKTVNRREL 256
R ++ + KMR IL+DWL+EV +KL ET YL + DRY+ + + V + L
Sbjct: 34 RDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLL 93
Query: 257 QLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYV 316
QL+GISS+ IA K EEI+ P+++ F ++D A G ++L ME I++ L W L+ T
Sbjct: 94 QLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVS 153
Query: 317 FLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHC------TL 370
+L Y++ + D L E+ + YP I + L V C L
Sbjct: 154 WLNVYMQVAYLND---------LHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGIL 204
Query: 371 NKSPLW----TETLKHHTGYSEEQLKDCAKLLVSFHLAAAES 408
S L+ +E ++ +GY +++C K +V F + E+
Sbjct: 205 AASALYHFSSSELMQKVSGYQWCDIENCVKWMVPFAMVIRET 246
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 16/208 (7%)
Query: 198 RVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQ 257
R + Q I MR +L W++EV + + E L +N LDRYLS + +LQ
Sbjct: 55 RASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQ 114
Query: 258 LVGISSMLIACKYEEIWAPQVNDFICI-SDYAYIGSQVLVMEKAILEKLGWYLTVPTPYV 316
L+G ML+A K E P + +CI +D+A Q+ E +L KL W L +
Sbjct: 115 LLGAVCMLLASKLRET-TPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHD 173
Query: 317 FLVRYVKASVSPDQEMENLV-----FFLAELGISHYPTVICYCPSMLAAASVYAA----- 366
FL ++ +S ++ + LV FLA L + Y T Y PSM+A S+ AA
Sbjct: 174 FLA-FILHRLSLPRDRQALVKKHAQTFLA-LCATDY-TFAMYPPSMIATGSIGAAVQGLG 230
Query: 367 HCTLNKSPLWTETLKHHTGYSEEQLKDC 394
C+++ L TE L TG + L+ C
Sbjct: 231 ACSMSGDEL-TELLAGITGTEVDCLRAC 257
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 199 VHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQL 258
V + Q + MR I+ W++EV + K E L +N LDR+LS++ V + LQL
Sbjct: 28 VSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQL 87
Query: 259 VGISSMLIACKYEEIWAPQVNDFICI-SDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVF 317
+G + M +A K +E P + +CI +D + ++L ME ++ KL W L TP+ F
Sbjct: 88 LGATCMFVASKMKET-IPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDF 146
Query: 318 LVRYV 322
+ ++
Sbjct: 147 IEHFL 151
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 206 QANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSML 265
Q + MR I+ W++EV + K E L +N LDR+LS++ V + LQL+G + M
Sbjct: 49 QKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMF 108
Query: 266 IACKYEEIWAPQVNDFICI-SDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYV 322
+A K +E P + +CI +D + ++L ME ++ KL W L TP+ F+ ++
Sbjct: 109 VASKMKET-IPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFL 165
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%)
Query: 206 QANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSML 265
Q + RTIL+ W+ + F+L L+V+ILDRYL K ++ LQ +G + +L
Sbjct: 44 QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVL 103
Query: 266 IACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGW 307
I K + V+ +S + +++ EK ILE L W
Sbjct: 104 IGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKW 145
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%)
Query: 206 QANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSML 265
Q + RTIL+ W+ + F+L L+V+ILDRYL K ++ LQ +G + +L
Sbjct: 23 QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVL 82
Query: 266 IACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGW 307
I K + V+ +S + +++ EK ILE L W
Sbjct: 83 IGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKW 124
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 257
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 188 MFYKLTEEEGRVHD----YMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILD 243
+FY + E E R + Q ++ + MR +L W+ V ++ L P + L +N+LD
Sbjct: 21 IFYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLD 80
Query: 244 RYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLV-MEKAIL 302
R L +K V++ Q G + +L+A K + P +C + Q L+ EK +L
Sbjct: 81 RLLLIKQVSKEHFQKTGSACLLVASKLRSL-TPISTSSLCYAAADSFSRQELIDQEKELL 139
Query: 303 EKLGW 307
EKL W
Sbjct: 140 EKLAW 144
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 72/174 (41%), Gaps = 22/174 (12%)
Query: 210 NAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACK 269
A+ R ++ +V + L +TL + R+ + + + G + +A K
Sbjct: 37 EARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGK 96
Query: 270 YEEIWAPQVNDFICIS-------DYAYIGS----QVLVMEKAILEKLGWYLTVPTPYVFL 318
EE + D I + + G +V+V+E+ +L+ + + L V PY FL
Sbjct: 97 VEET-PKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFL 155
Query: 319 VRYVKASVSPDQEMENLVFFLAELGISHYPTVIC------YCPSMLAAASVYAA 366
++Y K +++ LV ++ + +C + P ++A A +Y A
Sbjct: 156 LKYAKQLKGDKNKIQKLV----QMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLA 205
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|B Chain B, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|C Chain C, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|D Chain D, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
Length = 358
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 294 VLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICY 353
++++E IL+ LG+ LT+ P+ +V+ + V +++ +F+A + + Y
Sbjct: 133 LVILESIILQTLGFELTIDHPHTHVVKCTQL-VRASKDLAQTSYFMATNSLHLTTFSLQY 191
Query: 354 CPSMLAAASVYAA 366
P ++A ++ A
Sbjct: 192 TPPVVACVCIHLA 204
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
pdb|2W2H|B Chain B, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
Length = 264
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 294 VLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICY 353
++++E IL+ LG+ LT+ P+ +V+ + V +++ +F+A + + Y
Sbjct: 130 LVILESIILQTLGFELTIDHPHTHVVKCTQL-VRASKDLAQTSYFMATNSLHLTTFSLQY 188
Query: 354 CPSMLAAASVYAA 366
P ++A ++ A
Sbjct: 189 TPPVVACVCIHLA 201
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 266
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 294 VLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICY 353
++++E IL+ LG+ LT+ P+ +V+ + V +++ +F+A + + Y
Sbjct: 133 LVILESIILQTLGFELTIDHPHTHVVKCTQL-VRASKDLAQTSYFMATNSLHLTTFSLQY 191
Query: 354 CPSMLAAASVYAA 366
P ++A ++ A
Sbjct: 192 TPPVVACVCIHLA 204
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|B Chain B, Structure Of Cdk9CYCLIN T F241L
Length = 259
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 294 VLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICY 353
++++E IL+ LG+ LT+ P+ +V+ + V +++ +F+A + + Y
Sbjct: 133 LVILESIILQTLGFELTIDHPHTHVVKCTQL-VRASKDLAQTSYFMATNSLHLTTFSLQY 191
Query: 354 CPSMLAAASVYAA 366
P ++A ++ A
Sbjct: 192 TPPVVACVCIHLA 204
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|B Chain B, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|B Chain B, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|4EC8|B Chain B, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|B Chain B, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
pdb|4BCF|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCH|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 260
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 294 VLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICY 353
++++E IL+ LG+ LT+ P+ +V+ + V +++ +F+A + + Y
Sbjct: 134 LVILESIILQTLGFELTIDHPHTHVVKCTQL-VRASKDLAQTSYFMATNSLHLTTFSLQY 192
Query: 354 CPSMLAAASVYAA 366
P ++A ++ A
Sbjct: 193 TPPVVACVCIHLA 205
>pdb|2D2S|A Chain A, Crystal Structure Of The Exo84p C-Terminal Domains
Length = 235
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 199 VHDYMVSQANINAKMRTILVDWLI-EVHNKFKLMPETL 235
V D+ + AK+ +ILVDW EV N FKL+ + L
Sbjct: 154 VEDFQDIFKELGAKISSILVDWCSDEVDNHFKLIDKQL 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,569,415
Number of Sequences: 62578
Number of extensions: 432717
Number of successful extensions: 1125
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1050
Number of HSP's gapped (non-prelim): 42
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)