Query 013740
Match_columns 437
No_of_seqs 324 out of 1772
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 16:14:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 2.7E-57 9.1E-62 441.7 27.5 254 179-435 3-258 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 3.5E-56 1.2E-60 436.1 21.2 253 178-435 2-257 (269)
3 1w98_B Cyclin E, G1/S-specific 100.0 1.3E-49 4.5E-54 392.4 25.1 250 174-434 9-273 (283)
4 1g3n_C V-cyclin; cyclin-depend 100.0 1.3E-49 4.4E-54 386.9 23.5 235 173-411 11-255 (257)
5 2f2c_A Cyclin homolog, V-cycli 100.0 4.4E-49 1.5E-53 382.4 26.1 232 171-406 10-250 (254)
6 3g33_B CCND3 protein; Ser/Thr 100.0 1.3E-47 4.6E-52 382.2 25.8 230 174-406 31-269 (306)
7 1f5q_B Gamma herpesvirus cycli 100.0 5.1E-48 1.7E-52 375.4 21.8 228 167-405 9-243 (252)
8 2w96_A G1/S-specific cyclin-D1 100.0 1.7E-45 5.8E-50 360.5 23.6 227 174-405 18-258 (271)
9 2ivx_A Cyclin-T2; transcriptio 100.0 6.3E-37 2.1E-41 297.0 20.7 207 206-419 23-253 (257)
10 3rgf_B Cyclin-C; protein kinas 100.0 9.7E-36 3.3E-40 293.7 22.9 207 209-422 38-263 (285)
11 2i53_A Cyclin K; cell cycle, t 100.0 2.5E-36 8.7E-41 292.5 16.7 198 204-404 31-251 (258)
12 2pk2_A Cyclin-T1, protein TAT; 100.0 4.1E-35 1.4E-39 298.0 15.0 204 206-416 30-257 (358)
13 1zp2_A RNA polymerase II holoe 100.0 3.5E-34 1.2E-38 274.6 17.6 187 214-406 28-222 (235)
14 1jkw_A Cyclin H; cell cycle, c 100.0 1E-32 3.5E-37 276.8 21.0 204 211-417 54-276 (323)
15 1c9b_A General transcription f 99.9 9.8E-27 3.4E-31 218.4 20.8 183 213-401 4-186 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 1.7E-22 5.7E-27 188.5 22.5 185 212-402 7-193 (200)
17 3k7a_M Transcription initiatio 99.8 8.8E-19 3E-23 177.0 8.2 182 215-402 127-320 (345)
18 4bbr_M Transcription initiatio 99.3 2E-12 6.9E-17 130.5 9.1 181 216-402 128-320 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.3 2E-06 6.8E-11 84.3 11.0 106 216-324 76-184 (293)
20 1ais_B TFB TFIIB, protein (tra 96.5 0.01 3.5E-07 54.3 9.6 88 219-309 110-197 (200)
21 1c9b_A General transcription f 94.7 0.23 7.7E-06 45.4 11.2 86 314-402 8-93 (207)
22 1zp2_A RNA polymerase II holoe 87.9 0.84 2.9E-05 42.5 6.4 84 219-306 136-219 (235)
23 2ivx_A Cyclin-T2; transcriptio 87.0 2 6.9E-05 40.4 8.6 87 219-305 148-238 (257)
24 4bbr_M Transcription initiatio 84.9 5.2 0.00018 39.7 10.7 86 313-401 128-213 (345)
25 2b9r_A Human cyclin B1; cell c 84.7 6.6 0.00022 37.2 11.0 83 317-401 44-128 (269)
26 2i53_A Cyclin K; cell cycle, t 84.3 1.9 6.7E-05 40.4 7.0 88 219-306 153-250 (258)
27 3h4c_A Transcription factor TF 84.2 26 0.0009 32.4 14.9 88 216-307 14-104 (260)
28 2pk2_A Cyclin-T1, protein TAT; 82.6 1.7 5.8E-05 43.4 6.1 87 219-305 155-245 (358)
29 2w96_A G1/S-specific cyclin-D1 81.9 9.8 0.00033 36.0 11.0 71 330-401 75-147 (271)
30 2cch_B Cyclin A2, cyclin-A; co 80.8 7.6 0.00026 36.5 9.7 74 328-402 55-130 (260)
31 3rgf_B Cyclin-C; protein kinas 80.2 14 0.00047 35.3 11.5 83 317-401 49-147 (285)
32 1g3n_C V-cyclin; cyclin-depend 78.8 10 0.00035 35.5 9.9 73 328-401 67-141 (257)
33 3k7a_M Transcription initiatio 77.8 1.6 5.5E-05 43.3 4.0 87 314-403 129-215 (345)
34 2f2c_A Cyclin homolog, V-cycli 77.2 12 0.0004 35.0 9.8 73 328-401 68-142 (254)
35 3g33_B CCND3 protein; Ser/Thr 75.3 14 0.00047 35.8 9.9 71 330-401 89-161 (306)
36 1w98_B Cyclin E, G1/S-specific 73.1 21 0.00073 33.9 10.6 73 329-402 67-142 (283)
37 2pmi_B PHO85 cyclin PHO80, ami 71.3 28 0.00094 33.9 10.8 88 313-401 76-165 (293)
38 1jkw_A Cyclin H; cell cycle, c 62.3 56 0.0019 31.7 11.2 71 328-400 75-152 (323)
39 1f5q_B Gamma herpesvirus cycli 53.8 83 0.0028 29.4 10.4 71 329-400 66-138 (252)
40 2p1m_A SKP1-like protein 1A; F 42.2 16 0.00055 31.9 3.2 54 229-294 92-148 (160)
41 2ast_A S-phase kinase-associat 39.6 29 0.001 30.0 4.5 56 228-295 92-150 (159)
42 3v7d_A Suppressor of kinetocho 31.4 36 0.0012 30.0 3.7 56 228-295 99-157 (169)
43 1fs1_B SKP1, cyclin A/CDK2-ass 27.8 45 0.0015 28.3 3.6 46 228-284 87-135 (141)
44 2qdj_A Retinoblastoma-associat 26.2 1.2E+02 0.0039 29.6 6.5 65 221-286 6-74 (304)
45 3m03_A ORC6, origin recognitio 24.3 2.1E+02 0.0071 23.0 6.6 49 353-402 43-91 (95)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=2.7e-57 Score=441.65 Aligned_cols=254 Identities=39% Similarity=0.611 Sum_probs=242.8
Q ss_pred hhccHHHHHHHHHHHHHhcCC-CcccccCccCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccccccccch
Q 013740 179 VVEYVDDIYMFYKLTEEEGRV-HDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQ 257 (437)
Q Consensus 179 ~~eY~~dI~~~l~~~E~~~~~-~~yl~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~LQ 257 (437)
+.||++|||.||++.|.++.| ++||..|++|++.||.+++|||++|+..|+|+++|+|+||+|||||++...+++.++|
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lq 82 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQ 82 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHh
Confidence 679999999999999999888 6999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCCChHHHHHHH
Q 013740 258 LVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVF 337 (437)
Q Consensus 258 LvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~l~~la~ 337 (437)
|+|+||||||||+||.++|+++||+.++++.|++++|++||+.||++|+|+++.|||++||.+|++.....+.++..++.
T Consensus 83 lv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~ 162 (260)
T 2cch_B 83 LVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAM 162 (260)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999986534458899999
Q ss_pred HHHHHHhcchh-hhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHHHhcccCchhHHHHh
Q 013740 338 FLAELGISHYP-TVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYK 416 (437)
Q Consensus 338 yl~ELsL~d~~-~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tgys~~eL~~c~~~L~~l~~~~~~~~l~~aV~k 416 (437)
|++|++++|+. ++. |+||.||+||+++|+..++. +.|.+.+.+++||++++|.+|++.|..++.....++++ +|++
T Consensus 163 ~l~e~sl~~~~~~~~-~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~-~i~~ 239 (260)
T 2cch_B 163 FLGELSLIDADPYLK-YLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ-SIRE 239 (260)
T ss_dssp HHHHHHHHCHHHHTT-SCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCC-HHHH
T ss_pred HHHHHHHHhHHHHhC-CCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchH-HHHH
Confidence 99999999999 888 99999999999999999986 67999999999999999999999999999988888888 9999
Q ss_pred hcCCCccCcccccCCCCCC
Q 013740 417 KFSSHKRGAVALLNPAEYL 435 (437)
Q Consensus 417 KYs~~~~~~Va~~pp~~~l 435 (437)
||++++|+.||.+||++.|
T Consensus 240 Ky~~~~~~~vs~~~~~~~~ 258 (260)
T 2cch_B 240 KYKNSKYHGVSLLNPPETL 258 (260)
T ss_dssp HHTSGGGTTGGGSCCCSCC
T ss_pred HHCcccccceeCCCCcccC
Confidence 9999999999999998865
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=3.5e-56 Score=436.10 Aligned_cols=253 Identities=34% Similarity=0.586 Sum_probs=236.3
Q ss_pred chhccHHHHHHHHHHHHHhcCC-CcccccCccCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccccccccc
Q 013740 178 AVVEYVDDIYMFYKLTEEEGRV-HDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRREL 256 (437)
Q Consensus 178 ~~~eY~~dI~~~l~~~E~~~~~-~~yl~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~L 256 (437)
++.||++|||.||+..|.++.+ ++||+.| +|++.||.+++|||+++|.+|+++++|+|+|++|||||++...+++.++
T Consensus 2 ~~~eY~~di~~~l~~~E~~~~~~~~y~~~q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~l 80 (269)
T 2b9r_A 2 LSSEYVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKML 80 (269)
T ss_dssp -----CCTTTTTHHHHHHTTCCCTTTTSSS-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGH
T ss_pred ChHHHHHHHHHHHHHHHHhhCCCcccccCC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHh
Confidence 6889999999999999999887 6999988 9999999999999999999999999999999999999999999999999
Q ss_pred hhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCCChHHHHHH
Q 013740 257 QLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLV 336 (437)
Q Consensus 257 QLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~l~~la 336 (437)
||+|+||||||||+||.++|+++||++++++.|+.++|++||+.||++|+|+++.|||++||.+|++... .+.++..++
T Consensus 81 qlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~-~~~~~~~~a 159 (269)
T 2b9r_A 81 QLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGE-VDVEQHTLA 159 (269)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSC-CCHHHHHHH
T ss_pred hHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcC-CCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998854 688899999
Q ss_pred HHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHHHhccc--CchhHHH
Q 013740 337 FFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAE--SEQKLGV 414 (437)
Q Consensus 337 ~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tgys~~eL~~c~~~L~~l~~~~~~--~~l~~aV 414 (437)
.|++|+++.|+.++. |+||.||+|||++|+..++.. .|.+.|.+++||++++|.+|++.|..++..... .+++ +|
T Consensus 160 ~~l~e~sl~~~~~~~-~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~~~~-ai 236 (269)
T 2b9r_A 160 KYLMELTMLDYDMVH-FPPSQIAAGAFSLALKILDNG-EWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHM-TV 236 (269)
T ss_dssp HHHHHHGGGCGGGSS-SCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCCSCC-HH
T ss_pred HHHHHHHHhhhhhhc-CCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcchH-HH
Confidence 999999999999999 999999999999999999975 699999999999999999999999998876543 5788 99
Q ss_pred HhhcCCCccCcccccCCCCCC
Q 013740 415 YKKFSSHKRGAVALLNPAEYL 435 (437)
Q Consensus 415 ~kKYs~~~~~~Va~~pp~~~l 435 (437)
++||++++|+.||.+||+++.
T Consensus 237 ~~Ky~~~~~~~vs~~~~~~~~ 257 (269)
T 2b9r_A 237 KNKYATSKHAKISTLPQLNSA 257 (269)
T ss_dssp HHHTTSGGGTTGGGSSCCSGG
T ss_pred HHHhcchhhCcccCCCCCChH
Confidence 999999999999999998754
No 3
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.3e-49 Score=392.41 Aligned_cols=250 Identities=26% Similarity=0.439 Sum_probs=226.9
Q ss_pred CCccchhccHHHHHHHHHHHHHhcCC-CcccccCccCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhc-ccc
Q 013740 174 NDDLAVVEYVDDIYMFYKLTEEEGRV-HDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSM-KTV 251 (437)
Q Consensus 174 ~n~~~~~eY~~dI~~~l~~~E~~~~~-~~yl~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~-~~V 251 (437)
.+|.++.||.+|||.+|+..|..+.+ ++||..|++|++.||.+++|||++++.+|++.++|+|+||+|||||++. ..+
T Consensus 9 ~~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v 88 (283)
T 1w98_B 9 PLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENV 88 (283)
T ss_dssp CSCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCcchhhcCHHHHHHHHHHHHHHhCCCchhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCC
Confidence 46778889999999999999999877 6999999999999999999999999999999999999999999999998 589
Q ss_pred ccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCCC--
Q 013740 252 NRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPD-- 329 (437)
Q Consensus 252 ~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~-- 329 (437)
.+.++||+|+||||||||+||.++|++++|++++++.|+.++|++||+.||++|+|+|++|||++||.+|++.....+
T Consensus 89 ~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~ 168 (283)
T 1w98_B 89 VKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLH 168 (283)
T ss_dssp CGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSC
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998743221
Q ss_pred --------hHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHH
Q 013740 330 --------QEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSF 401 (437)
Q Consensus 330 --------~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tgys~~eL~~c~~~L~~l 401 (437)
......+.+++|++++|+.++. |+||.|||||||+|+ |.+.+..++||++++|.+|++.|..+
T Consensus 169 ~~~~~~~~~~~~~~~~~llelsl~d~~~l~-~~PS~iAaAai~la~--------~~~~l~~~tg~~~~~i~~c~~~l~~~ 239 (283)
T 1w98_B 169 EVLLPQYPQQIFIQIAELLDLCVLDVDCLE-FPYGILAASALYHFS--------SSELMQKVSGYQWCDIENCVKWMVPF 239 (283)
T ss_dssp CSSSCCSCHHHHHHHHHHHHHHHHSGGGGG-SCHHHHHHHHHHHTS--------CHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhhhhhc-CCHHHHHHHHHHHHH--------ChHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1223457789999999999999 999999999999983 78999999999999999999999988
Q ss_pred HHhc---ccCchhHHHHhhcCCCccCcccccCCCCC
Q 013740 402 HLAA---AESEQKLGVYKKFSSHKRGAVALLNPAEY 434 (437)
Q Consensus 402 ~~~~---~~~~l~~aV~kKYs~~~~~~Va~~pp~~~ 434 (437)
+... ..++++ .|+||++++++.|+.++|.-.
T Consensus 240 ~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~ 273 (283)
T 1w98_B 240 AMVIRETGSSKLK--HFRGVADEDAHNIQTHRDSLD 273 (283)
T ss_dssp HHHHHHHCCCCCC--CCTTSCGGGGGGBCCCCCHHH
T ss_pred HHHHHhcChHhhc--chhccCHHhccCcccCcchHH
Confidence 7743 456666 489999999999999887543
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.3e-49 Score=386.86 Aligned_cols=235 Identities=18% Similarity=0.167 Sum_probs=211.4
Q ss_pred CCCccchhccHHHHHHHHHHHHHhcCC-Cccc-ccCccCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccc
Q 013740 173 VNDDLAVVEYVDDIYMFYKLTEEEGRV-HDYM-VSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKT 250 (437)
Q Consensus 173 ~~n~~~~~eY~~dI~~~l~~~E~~~~~-~~yl-~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~ 250 (437)
..||.++.| +||| +|++.|..+.| ++|+ ..|++|++.||.++||||++||.+|+++++|+|+||+||||||+...
T Consensus 11 ~~dp~~~~~--~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~ 87 (257)
T 1g3n_C 11 LLDPTLCED--RIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQ 87 (257)
T ss_dssp -----CHHH--HHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCccccH--HHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCC
Confidence 567888887 9999 99999999988 4898 58999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCCCh
Q 013740 251 VNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQ 330 (437)
Q Consensus 251 V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~ 330 (437)
+.+.++||+|+||||||||+||.++|++++|++++++.|+.++|++||+.||++|+|+++.|||++||.+|++.......
T Consensus 88 v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~ 167 (257)
T 1g3n_C 88 VSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQ 167 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSST
T ss_pred CCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988642322
Q ss_pred ---HHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCC-----CCchHHHHHhhCCCHHHHHHHHHHHHHHH
Q 013740 331 ---EMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKS-----PLWTETLKHHTGYSEEQLKDCAKLLVSFH 402 (437)
Q Consensus 331 ---~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~-----~~W~~~L~~~tgys~~eL~~c~~~L~~l~ 402 (437)
.+..++.|+++++++|+.++. |+||.||+|||++|+..++.. +.|.+.|.+++||++++|.+|++.|..++
T Consensus 168 ~~~~~~~~a~~~le~~l~d~~~~~-~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 168 HLDFWHHEVNTLITKALVDPLTGS-LPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSV 246 (257)
T ss_dssp THHHHHHHHHHHHHHHHTSTTGGG-SCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcchhC-cCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 246789999999999999999 999999999999999998842 57999999999999999999999999988
Q ss_pred HhcccCchh
Q 013740 403 LAAAESEQK 411 (437)
Q Consensus 403 ~~~~~~~l~ 411 (437)
....+..+.
T Consensus 247 ~~~~~~~l~ 255 (257)
T 1g3n_C 247 SDFDLRILD 255 (257)
T ss_dssp HHCCCCC--
T ss_pred HHCCHHhhc
Confidence 776655554
No 5
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=4.4e-49 Score=382.44 Aligned_cols=232 Identities=20% Similarity=0.251 Sum_probs=209.8
Q ss_pred CCCCCccchhccHHHHHHHHHHHHHhcCC-Ccccc-cCccCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhc
Q 013740 171 PDVNDDLAVVEYVDDIYMFYKLTEEEGRV-HDYMV-SQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSM 248 (437)
Q Consensus 171 ~d~~n~~~~~eY~~dI~~~l~~~E~~~~~-~~yl~-~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~ 248 (437)
.+.+||.++.| +|||. |+..|..+.| ++||. .|++|++.||.++||||++||.+|+++++|+|+||+||||||+.
T Consensus 10 ~~~~dp~l~~~--~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~ 86 (254)
T 2f2c_A 10 RAKIDSTTMKD--PRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCK 86 (254)
T ss_dssp BCCCCHHHHTC--HHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTT
T ss_pred CCCCCcccccH--HHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHcc
Confidence 34668999988 99999 9999999988 59995 89999999999999999999999999999999999999999999
Q ss_pred cccccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCC
Q 013740 249 KTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSP 328 (437)
Q Consensus 249 ~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~ 328 (437)
..+.+.++||+|+||||||||+||..+|++++|++++++.|++++|++||+.||++|+|+++.|||++||.+|++.....
T Consensus 87 ~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~ 166 (254)
T 2f2c_A 87 KQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIP 166 (254)
T ss_dssp SCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCC
T ss_pred CCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986423
Q ss_pred ChH---HHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCC-c---hHHHHHhhCCCHHHHHHHHHHHHHH
Q 013740 329 DQE---MENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPL-W---TETLKHHTGYSEEQLKDCAKLLVSF 401 (437)
Q Consensus 329 ~~~---l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~-W---~~~L~~~tgys~~eL~~c~~~L~~l 401 (437)
+.. ++.++.|+++++++|+.++. |+||.|||||+++|+..++..+. | .+.|.+++||++++|.+|++.|..+
T Consensus 167 ~~~~~~~~~~a~~ll~~~l~d~~~~~-~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 167 EDLWPQLYEAASTTICKALIQPNIAL-LSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEA 245 (254)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSGGGTT-SCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCcchhc-cCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 222 36789999999999999999 99999999999999998754443 6 8899999999999999999999987
Q ss_pred HHhcc
Q 013740 402 HLAAA 406 (437)
Q Consensus 402 ~~~~~ 406 (437)
+....
T Consensus 246 ~~~~~ 250 (254)
T 2f2c_A 246 FSLYD 250 (254)
T ss_dssp HHTCC
T ss_pred HHhCC
Confidence 75443
No 6
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-47 Score=382.15 Aligned_cols=230 Identities=26% Similarity=0.309 Sum_probs=206.3
Q ss_pred CCccchhccHHHHHHHHHHHHHhcCCC-cccc-cCccCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcccc
Q 013740 174 NDDLAVVEYVDDIYMFYKLTEEEGRVH-DYMV-SQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTV 251 (437)
Q Consensus 174 ~n~~~~~eY~~dI~~~l~~~E~~~~~~-~yl~-~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V 251 (437)
.||.++ |.+|||++|+..|..+.|. +|+. .|++|++.||.++||||++|+.+|+|.++|+|+||+||||||+...+
T Consensus 31 ~dp~l~--~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v 108 (306)
T 3g33_B 31 PDPRLL--GDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPT 108 (306)
T ss_dssp --------CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCC
T ss_pred CCCccc--chHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCC
Confidence 345444 9999999999999999884 8996 79999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCCCh-
Q 013740 252 NRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQ- 330 (437)
Q Consensus 252 ~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~- 330 (437)
.+.++||+|+||||||||+||..+|.+++|++++++.|+.++|++||+.||++|+|+|++|||++||.+|++.......
T Consensus 109 ~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~ 188 (306)
T 3g33_B 109 RKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDR 188 (306)
T ss_dssp CGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTT
T ss_pred cHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987432222
Q ss_pred --HHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCc----hHHHHHhhCCCHHHHHHHHHHHHHHHHh
Q 013740 331 --EMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLW----TETLKHHTGYSEEQLKDCAKLLVSFHLA 404 (437)
Q Consensus 331 --~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W----~~~L~~~tgys~~eL~~c~~~L~~l~~~ 404 (437)
.+...+.|+++++++|+.|+. |+||+||||||++|++.++..+.| .+.|.+++||++++|.+|++.|..++..
T Consensus 189 ~~~~~~~a~~~l~lsl~d~~~l~-~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 189 QALVKKHAQTFLALCATDYTFAM-YPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTT-SCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhhhcc-CCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999 999999999999999999976666 6788999999999999999999998875
Q ss_pred cc
Q 013740 405 AA 406 (437)
Q Consensus 405 ~~ 406 (437)
..
T Consensus 268 ~l 269 (306)
T 3g33_B 268 SL 269 (306)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 7
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=5.1e-48 Score=375.45 Aligned_cols=228 Identities=15% Similarity=0.209 Sum_probs=202.6
Q ss_pred CCCCCCCCCccchhccHHHHHHHHHHHHHhcCCCcccccCccCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhh
Q 013740 167 NIDAPDVNDDLAVVEYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYL 246 (437)
Q Consensus 167 did~~d~~n~~~~~eY~~dI~~~l~~~E~~~~~~~yl~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfL 246 (437)
.+|.. ..||.++. ++||.++++.|..+.| +..|++|++.||.++||||++||.+|+|.++|+|+||+||||||
T Consensus 9 ~~~~~-~~dp~l~~---d~i~~~l~~~E~~~~p---~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfL 81 (252)
T 1f5q_B 9 FLDSS-LLNEEDCR---QMIYRSEREHDARMVG---VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELF 81 (252)
T ss_dssp SCSCT-TCCHHHHH---HHHHHHHHHHHHHHSS---SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CCCcC-cCCHHHhH---HHHHHHHHHHHHHhCc---CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 34443 34666664 4999999999999887 67789999999999999999999999999999999999999999
Q ss_pred hccccccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcC
Q 013740 247 SMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASV 326 (437)
Q Consensus 247 s~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~ 326 (437)
+...+.+.++||+|+||||||||+||.++|.+++|++++++.|+.++|++||+.||++|+|+|+.|||++||++|++...
T Consensus 82 s~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~ 161 (252)
T 1f5q_B 82 LSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMH 161 (252)
T ss_dssp HHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTT
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998854
Q ss_pred CCCh---HHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCc----hHHHHHhhCCCHHHHHHHHHHHH
Q 013740 327 SPDQ---EMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLW----TETLKHHTGYSEEQLKDCAKLLV 399 (437)
Q Consensus 327 ~~~~---~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W----~~~L~~~tgys~~eL~~c~~~L~ 399 (437)
..+. .+..++.|+++++++|+.|+. |+||+||+||+ +..++....| .+.|.+++||++++|.+|++.|.
T Consensus 162 ~~~~~~~~~~~~a~~~l~~~l~d~~~l~-~~PS~iAaaa~---~~~l~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~ 237 (252)
T 1f5q_B 162 APREDYLNIYNLCRPKIFCALCDGRSAM-KRPVLITLACM---HLTMNQKYDYYENRIDGVCKSLYITKEELHQCCDLVD 237 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHHHHT-SCHHHHHHHHH---HHHHTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHhchhhhc-cCHHHHHHHHH---HHHhccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2222 356789999999999999999 99999999994 4445554445 67899999999999999999999
Q ss_pred HHHHhc
Q 013740 400 SFHLAA 405 (437)
Q Consensus 400 ~l~~~~ 405 (437)
.++...
T Consensus 238 ~~l~~~ 243 (252)
T 1f5q_B 238 IAIVSF 243 (252)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 876543
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=1.7e-45 Score=360.46 Aligned_cols=227 Identities=26% Similarity=0.356 Sum_probs=201.6
Q ss_pred CCccchhccHHHHHHHHHHHHHhcCC-Cccc-ccCccCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcccc
Q 013740 174 NDDLAVVEYVDDIYMFYKLTEEEGRV-HDYM-VSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTV 251 (437)
Q Consensus 174 ~n~~~~~eY~~dI~~~l~~~E~~~~~-~~yl-~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V 251 (437)
.||.++ .+|||.+|+..|..+.| ++|+ ..|++|++.||.++++||++++.+|+++++|+|+||+|||||++...+
T Consensus 18 ~dp~~~---~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v 94 (271)
T 2w96_A 18 PDANLL---NDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPV 94 (271)
T ss_dssp ----------CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCC
T ss_pred CCCccc---HHHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCc
Confidence 345444 67999999999999988 5887 579999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCCChH
Q 013740 252 NRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQE 331 (437)
Q Consensus 252 ~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~ 331 (437)
.+.++||+|+||||||||+||.+||++++|++++++.|++++|++||+.||++|+|++++|||++||.+|++... .+.+
T Consensus 95 ~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~-~~~~ 173 (271)
T 2w96_A 95 KKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMP-EAEE 173 (271)
T ss_dssp CTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSC-CCHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcC-CCch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999854 3332
Q ss_pred ----HHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCC----CCC----chHHHHHhhCCCHHHHHHHHHHHH
Q 013740 332 ----MENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNK----SPL----WTETLKHHTGYSEEQLKDCAKLLV 399 (437)
Q Consensus 332 ----l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~----~~~----W~~~L~~~tgys~~eL~~c~~~L~ 399 (437)
+...+.+++++++.|+.++. |+||.||+||||+|+..++. .+. |.+.|.+++||++++|++|++.|.
T Consensus 174 ~~~~~~~~a~~~l~~~~~d~~~~~-~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~ 252 (271)
T 2w96_A 174 NKQIIRKHAQTFVALCATDVKFIS-NPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIE 252 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTSTHHHH-SCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhc-cCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 24578899999999999999 99999999999999988752 233 456899999999999999999999
Q ss_pred HHHHhc
Q 013740 400 SFHLAA 405 (437)
Q Consensus 400 ~l~~~~ 405 (437)
.++...
T Consensus 253 ~l~~~~ 258 (271)
T 2w96_A 253 ALLESS 258 (271)
T ss_dssp HHHTTT
T ss_pred HHHHHH
Confidence 887644
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=6.3e-37 Score=297.03 Aligned_cols=207 Identities=15% Similarity=0.270 Sum_probs=182.6
Q ss_pred CccCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHhh
Q 013740 206 QANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICIS 285 (437)
Q Consensus 206 Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is 285 (437)
+++....||..+++||.+++.+|+|+++|+++|++|||||++...+.+.++|++|+||||||||+||. ++.+.+|+.++
T Consensus 23 ~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~ 101 (257)
T 2ivx_A 23 EADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVA 101 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHH
Confidence 34455689999999999999999999999999999999999999999999999999999999999998 89999997654
Q ss_pred --------------ccccc--hHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCCChHHHHHHHHHHHHHhcchh-
Q 013740 286 --------------DYAYI--GSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYP- 348 (437)
Q Consensus 286 --------------~~~yt--~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~- 348 (437)
++.|+ +++|++||+.||++|+|+|++|||+.||.+|++... .+.++..+|.++++.+++++.
T Consensus 102 ~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~-~~~~~~~~A~~~~~~sl~~~~~ 180 (257)
T 2ivx_A 102 HACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVR-ASKDLAQTSYFMATNSLHLTTF 180 (257)
T ss_dssp HHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhcccH
Confidence 45676 899999999999999999999999999999999865 678899999999999986444
Q ss_pred hhccCChHHHHHHHHHHHHHHhCCC-------CCchHHHHHhhCCCHHHHHHHHHHHHHHHHhcccCchhHHHHhhcC
Q 013740 349 TVICYCPSMLAAASVYAAHCTLNKS-------PLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKKFS 419 (437)
Q Consensus 349 ~l~~~~PS~IAaAal~lA~~~l~~~-------~~W~~~L~~~tgys~~eL~~c~~~L~~l~~~~~~~~l~~aV~kKYs 419 (437)
++. |+||.||+||||+|...++.. +.|.+.+ .+|+++++|.+|++.|+.++...+. .++ .|+.++.
T Consensus 181 ~l~-~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~~~-~l~-~~~~~~~ 253 (257)
T 2ivx_A 181 CLQ-YKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKTPN-RLK-KIRNWRA 253 (257)
T ss_dssp GGT-SCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTSHH-HHH-HHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhChH-Hhh-HHHHhhh
Confidence 677 999999999999999998742 3477654 5689999999999999999877664 666 7777653
No 10
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.7e-36 Score=293.69 Aligned_cols=207 Identities=17% Similarity=0.227 Sum_probs=186.9
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHhhcc-
Q 013740 209 INAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDY- 287 (437)
Q Consensus 209 It~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~- 287 (437)
--.+||..+++||.+++.+|+|+++|+++|++|||||++...+.+.++|++|+||||||||+||...|++++|+.++++
T Consensus 38 ~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~ 117 (285)
T 3rgf_B 38 EYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSV 117 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 3357999999999999999999999999999999999999999999999999999999999999998899999876532
Q ss_pred -------------ccchHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCCChHHHHHHHHHHHHHhcchhhhccCC
Q 013740 288 -------------AYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYC 354 (437)
Q Consensus 288 -------------~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~~l~~~~ 354 (437)
.|+.++|++||+.||++|+|+|.++||+.||.+|++... .+.++..+|.++++.++.++.++. |+
T Consensus 118 ~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~-~~~~~~~~A~~~l~~sl~t~~~l~-~~ 195 (285)
T 3rgf_B 118 LKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMG-QEDMLLPLAWRIVNDTYRTDLCLL-YP 195 (285)
T ss_dssp HHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSSHHHH-SC
T ss_pred HcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHccChhhc-cC
Confidence 478899999999999999999999999999999999865 678899999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHhCCC-CCchHHHHHhhCCCHHHHHHHHHHHHHHHHhc----ccCchhHHHHhhcCCCc
Q 013740 355 PSMLAAASVYAAHCTLNKS-PLWTETLKHHTGYSEEQLKDCAKLLVSFHLAA----AESEQKLGVYKKFSSHK 422 (437)
Q Consensus 355 PS~IAaAal~lA~~~l~~~-~~W~~~L~~~tgys~~eL~~c~~~L~~l~~~~----~~~~l~~aV~kKYs~~~ 422 (437)
||.||+||||+|.++++.. +.|.. .+|+++++|.+|+..|++++... ....+. .+++||+.++
T Consensus 196 Ps~IAaAaiylA~~~~~~~~~~W~~----~~~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~-~~~~k~~~~~ 263 (285)
T 3rgf_B 196 PFMIALACLHVACVVQQKDARQWFA----ELSVDMEKILEIIRVILKLYEQWKNFDERKEMA-TILSKMPKPK 263 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHH----TSCSCHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHcCCChhhHHH----HHCCCHHHHHHHHHHHHHHHHhcccCchhhhHH-HHHHhCCCCC
Confidence 9999999999999998853 33543 46999999999999999998753 344567 8999999998
No 11
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.5e-36 Score=292.51 Aligned_cols=198 Identities=19% Similarity=0.321 Sum_probs=174.9
Q ss_pred ccCccCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHH
Q 013740 204 VSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFIC 283 (437)
Q Consensus 204 ~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~ 283 (437)
..++++...||..+++||.+++.+|+|+++|+++|++|||||++...+.+.++|++|+||||||||+|| .++.+++|+.
T Consensus 31 ~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~ 109 (258)
T 2i53_A 31 GLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEE-TPKKCKDIIK 109 (258)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccc-ccccHHHHHH
Confidence 346788899999999999999999999999999999999999999999999999999999999999999 5889999986
Q ss_pred hh-----cccc------chHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCCCh----HHHHHHHHHHHHHhcchh
Q 013740 284 IS-----DYAY------IGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQ----EMENLVFFLAELGISHYP 348 (437)
Q Consensus 284 is-----~~~y------t~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~----~l~~la~yl~ELsL~d~~ 348 (437)
.+ ++.| ++++|++||+.||++|+|++++|||+.||.+|++... .+. ++..+|.++++.++.++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~-~~~~~~~~~~~~A~~l~~~s~~~~~ 188 (258)
T 2i53_A 110 TARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLK-GDKNKIQKLVQMAWTFVNDSLCTTL 188 (258)
T ss_dssp HHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBC-SCHHHHHHHHHHHHHHHHHHTTTTG
T ss_pred HHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHHHHcCCc
Confidence 43 4556 4889999999999999999999999999999999855 443 688999999999999999
Q ss_pred hhccCChHHHHHHHHHHHHHHhCCC-CCchHH------HH-HhhCCCHHHHHHHHHHHHHHHHh
Q 013740 349 TVICYCPSMLAAASVYAAHCTLNKS-PLWTET------LK-HHTGYSEEQLKDCAKLLVSFHLA 404 (437)
Q Consensus 349 ~l~~~~PS~IAaAal~lA~~~l~~~-~~W~~~------L~-~~tgys~~eL~~c~~~L~~l~~~ 404 (437)
++. |+||.||+||||+|+..++.. +.|+.. .. .++|+++++|.+|++.|++++..
T Consensus 189 ~l~-~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~ 251 (258)
T 2i53_A 189 SLQ-WEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQ 251 (258)
T ss_dssp GGT-SCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSS
T ss_pred hhc-cChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhc
Confidence 999 999999999999999998853 345432 12 24799999999999999987654
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=4.1e-35 Score=297.96 Aligned_cols=204 Identities=17% Similarity=0.300 Sum_probs=178.5
Q ss_pred CccCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHhh
Q 013740 206 QANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICIS 285 (437)
Q Consensus 206 Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is 285 (437)
+++....||..+++||.+++.+|+|+++|+++|++|||||++...+.+.++||||+||||||||+||. ++.+.+|+.++
T Consensus 30 ~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~ 108 (358)
T 2pk2_A 30 DPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVA 108 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHH
Confidence 33455689999999999999999999999999999999999999999999999999999999999998 88999998654
Q ss_pred --------------ccccc--hHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCCChHHHHHHHHHHHHHhcchh-
Q 013740 286 --------------DYAYI--GSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYP- 348 (437)
Q Consensus 286 --------------~~~yt--~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~- 348 (437)
++.|+ +++|++||+.||++|+|+|.+|||+.||.+|++... .+.++..+|+++++.+++++.
T Consensus 109 ~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~-~~~~l~~~A~~ll~~sl~~t~l 187 (358)
T 2pk2_A 109 HTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVR-ASKDLAQTSYFMATNSLHLTTF 187 (358)
T ss_dssp HHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTT-CCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCcc
Confidence 45676 899999999999999999999999999999999865 678899999999999996555
Q ss_pred hhccCChHHHHHHHHHHHHHHhCCC-------CCchHHHHHhhCCCHHHHHHHHHHHHHHHHhcccCchhHHHHh
Q 013740 349 TVICYCPSMLAAASVYAAHCTLNKS-------PLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYK 416 (437)
Q Consensus 349 ~l~~~~PS~IAaAal~lA~~~l~~~-------~~W~~~L~~~tgys~~eL~~c~~~L~~l~~~~~~~~l~~aV~k 416 (437)
++. |+||.||+||||+|...++.. ..|.+.+ .+++++++|.+|++.|+.++...+. .++ .+..
T Consensus 188 ~l~-y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~~~-~L~-~i~~ 257 (358)
T 2pk2_A 188 SLQ-YTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKTPN-RLK-RIWN 257 (358)
T ss_dssp GGT-SCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTCTT-HHH-HHHH
T ss_pred hhc-cCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhCcc-ccc-chhc
Confidence 677 999999999999999998732 3477654 4689999999999999998876654 565 5443
No 13
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-34 Score=274.59 Aligned_cols=187 Identities=16% Similarity=0.236 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcccccc-ccchhhHhHHHHhhhcccccCCCChhhHHHhhcc-----
Q 013740 214 RTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNR-RELQLVGISSMLIACKYEEIWAPQVNDFICISDY----- 287 (437)
Q Consensus 214 R~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~-~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~----- 287 (437)
|..+++||.+++..|+|+++|+++|++|||||++...+.+ .++|++|+||||||||+|| .++.++||+.++++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999 9999999999999999999 58899999998875
Q ss_pred -ccchHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCCChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHH
Q 013740 288 -AYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAA 366 (437)
Q Consensus 288 -~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA 366 (437)
.+++++|++||+.||+.|+|++.++||+.||.+|++... .+.++..+|.++++.++.++.++. |+||.||+||||+|
T Consensus 107 ~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~-~~~~~~~~A~~~l~~s~~~~~~l~-~~Ps~IAaAai~lA 184 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGI-INQKQLEFAWSIVNDSYASSLCLM-AHPHQLAYAALLIS 184 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTS-SCHHHHHHHHHHHHHHTTTTGGGT-SCHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCchhc-cCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999754 678889999999999999999999 99999999999999
Q ss_pred HHHhCCC-CCchHHHHHhhCCCHHHHHHHHHHHHHHHHhcc
Q 013740 367 HCTLNKS-PLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAA 406 (437)
Q Consensus 367 ~~~l~~~-~~W~~~L~~~tgys~~eL~~c~~~L~~l~~~~~ 406 (437)
...++.. +.|...+ .|+++++|.+|++.|..++....
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~i~~ly~~~~ 222 (235)
T 1zp2_A 185 CCNDENTIPKLLDLI---KSTDAFKVILCVQRIISIYYFED 222 (235)
T ss_dssp HTSCTTHHHHHHHHC---CHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHhcCCCCCCCcchh---hcCCHHHHHHHHHHHHHHHhhCC
Confidence 9887742 2354444 29999999999999999887543
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=1e-32 Score=276.75 Aligned_cols=204 Identities=14% Similarity=0.148 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHhhcc-
Q 013740 211 AKMRTILVDWLIEVHNKFK--LMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDY- 287 (437)
Q Consensus 211 ~~mR~~LVdWLieV~~~f~--L~~eTl~lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~- 287 (437)
..+|...++||.++|..|+ |+++|+++|++|||||++...+.+.++|+||+||||||||+||. ++++.+|++.+.+
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccC
Confidence 4789999999999999999 99999999999999999999999999999999999999999998 6789999876643
Q ss_pred ----ccchHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhc------CCCChHHHHHHHHHHHHHhcchhhhccCChHH
Q 013740 288 ----AYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKAS------VSPDQEMENLVFFLAELGISHYPTVICYCPSM 357 (437)
Q Consensus 288 ----~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~------~~~~~~l~~la~yl~ELsL~d~~~l~~~~PS~ 357 (437)
.|+.++|++||+.||++|+|+|.++||+.||.+|+... ......+..+|.++++.+++++.++. |+||.
T Consensus 133 p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~-~~Ps~ 211 (323)
T 1jkw_A 133 PLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLL-YTPSQ 211 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHH-SCHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHc-CCHHH
Confidence 47899999999999999999999999999999998653 22335688999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhCCC-CCchHHHHHh--hCCCHHHHHHHHHHHHHHHHhc---ccCchhHHHHhh
Q 013740 358 LAAASVYAAHCTLNKS-PLWTETLKHH--TGYSEEQLKDCAKLLVSFHLAA---AESEQKLGVYKK 417 (437)
Q Consensus 358 IAaAal~lA~~~l~~~-~~W~~~L~~~--tgys~~eL~~c~~~L~~l~~~~---~~~~l~~aV~kK 417 (437)
||+||||+|...++.. +.|...+.++ ++++.++|.+|++.|..++... ....++ +|++|
T Consensus 212 IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~k-~i~~K 276 (323)
T 1jkw_A 212 IALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVA-VLKQK 276 (323)
T ss_dssp HHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCCCCCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHccCCCCHHHHH-HHHHH
Confidence 9999999999999853 7899988776 8899999999999998887653 333556 77777
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.95 E-value=9.8e-27 Score=218.43 Aligned_cols=183 Identities=14% Similarity=0.167 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchH
Q 013740 213 MRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGS 292 (437)
Q Consensus 213 mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~ 292 (437)
......+||.+++..|+|+++|+.+|+.||+||+....+...+.++++++|||||||+||. |+++.|++.+++ ++..
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~~ 80 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISKK 80 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCHH
Confidence 4557789999999999999999999999999999999999999999999999999999997 889999999887 8999
Q ss_pred HHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCCChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCC
Q 013740 293 QVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNK 372 (437)
Q Consensus 293 eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~ 372 (437)
+|.++|+.||+.|+|++..++|+.||.+|++... .+.++..+|.++++.++.+.-++. |+|+.||+||||+|...++.
T Consensus 81 ~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~-l~~~~~~~A~~i~~~~~~~~l~~g-~~P~~IAaAaiylA~~~~~~ 158 (207)
T 1c9b_A 81 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLC-LPKQVQMAATHIARKAVELDLVPG-RSPISVAAAAIYMASQASAE 158 (207)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHTTCSTT-CCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCccCC-CChHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999998855 677899999999999987766677 99999999999999998875
Q ss_pred CCCchHHHHHhhCCCHHHHHHHHHHHHHH
Q 013740 373 SPLWTETLKHHTGYSEEQLKDCAKLLVSF 401 (437)
Q Consensus 373 ~~~W~~~L~~~tgys~~eL~~c~~~L~~l 401 (437)
+.|...+..++|+++.+|.+|++.|...
T Consensus 159 -~~~~~~i~~~~~v~~~tI~~~~~~l~~~ 186 (207)
T 1c9b_A 159 -KRTQKEIGDIAGVADVTIRQSYRLIYPR 186 (207)
T ss_dssp -CCCHHHHHHHHTCCHHHHHHHHHHHGGG
T ss_pred -CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4688899999999999999999998864
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.90 E-value=1.7e-22 Score=188.48 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccch
Q 013740 212 KMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIG 291 (437)
Q Consensus 212 ~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~ 291 (437)
+......+||.+++..++|++.+...|..|++||+....+.....+.++++|||||||.|+ .|.++.|+..+++ ++.
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~--v~~ 83 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR--VDK 83 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT--SCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC--CCH
Confidence 3346788999999999999999999999999999999999999999999999999999999 6899999998876 789
Q ss_pred HHHHHHHHHHHHHhCCcccC--CchhhHHHHHHHhcCCCChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHH
Q 013740 292 SQVLVMEKAILEKLGWYLTV--PTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCT 369 (437)
Q Consensus 292 ~eIl~mE~~IL~~L~f~L~~--pTp~~FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~ 369 (437)
.+|.++++.|++.|+|++.. ++|+.|+.+|..... .+.++...|.++++.+..+.-+.. ++|+.|||||||+|...
T Consensus 84 ~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~-l~~~v~~~A~~i~~~~~~~~~~~g-r~P~~iAaAaly~A~~~ 161 (200)
T 1ais_B 84 KEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELG-LSEKVRRRAIEILDEAYKRGLTSG-KSPAGLVAAALYIASLL 161 (200)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHT-CCHHHHHHHHHHHHHHHHTTCCTT-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCcccC-CCHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999999865 677899999999999998777777 99999999999999988
Q ss_pred hCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHH
Q 013740 370 LNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFH 402 (437)
Q Consensus 370 l~~~~~W~~~L~~~tgys~~eL~~c~~~L~~l~ 402 (437)
++. +.|...+..++|+++.+|..|++.|....
T Consensus 162 ~~~-~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 162 EGE-KRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp TTC-CCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 875 46999999999999999999999998754
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8.8e-19 Score=177.01 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHH
Q 013740 215 TILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQV 294 (437)
Q Consensus 215 ~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eI 294 (437)
......|..++..++|+..+.-.|..||.||+....+.....+.++++|||||||.|+. |.++.||+.+++ ++..+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~keI 203 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHHH
Confidence 46678899999999999999999999999999999999999999999999999998886 889999999876 889999
Q ss_pred HHHHHHHHHHhC------------CcccCCchhhHHHHHHHhcCCCChHHHHHHHHHHHHHhcchhhhccCChHHHHHHH
Q 013740 295 LVMEKAILEKLG------------WYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAAS 362 (437)
Q Consensus 295 l~mE~~IL~~L~------------f~L~~pTp~~FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAa 362 (437)
.++++.|++.|+ +++..++|+.|+.+|+.... .+.++...|.++++.+..+.-+.. ++|+.|||||
T Consensus 204 gr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~-l~~~v~~~A~~i~~~~~~~~l~~G-r~P~~IAaAa 281 (345)
T 3k7a_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG-LPMQVTTSAEYTAKKCKEIKEIAG-KSPITIAVVS 281 (345)
T ss_dssp HHHHHHHHHHHTCC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhchhcC-CCHHHHHHHH
Confidence 999999999999 99999999999999998854 567889999999999888776677 9999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHH
Q 013740 363 VYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFH 402 (437)
Q Consensus 363 l~lA~~~l~~~~~W~~~L~~~tgys~~eL~~c~~~L~~l~ 402 (437)
||+|...++. +.|...+...+|+++..|+.+++.|..+.
T Consensus 282 IylAa~~~~~-~~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 282 IYLNILLFQI-PITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999988875 35888999999999999999999998764
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.33 E-value=2e-12 Score=130.49 Aligned_cols=181 Identities=11% Similarity=0.069 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHH
Q 013740 216 ILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVL 295 (437)
Q Consensus 216 ~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl 295 (437)
.....|-+++..++|+..+.-.|..|+.+++....+.......++++|||||||.++ .|.++.|+..+++ .+..+|.
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~-~prtl~eI~~~~~--v~~keig 204 (345)
T 4bbr_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIH--VKTKEFG 204 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC-CBCCHHHHHHHHT--CCTTHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC-CCccHHHHHHHhC--CCHHHHH
Confidence 456688899999999999999999999999999989999999999999999999877 5889999988876 6899999
Q ss_pred HHHHHHHHHhCCc------------ccCCchhhHHHHHHHhcCCCChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHH
Q 013740 296 VMEKAILEKLGWY------------LTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASV 363 (437)
Q Consensus 296 ~mE~~IL~~L~f~------------L~~pTp~~FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal 363 (437)
+..+.|++.|+.. +...+|.+|+.+|..... .+.++...|..+++.+.-+.-... .+|+.||||||
T Consensus 205 r~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~-l~~~v~~~A~~i~~~~~~~~i~~G-R~P~~IAAAaI 282 (345)
T 4bbr_M 205 KTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG-LPMQVTTSAEYTAKKCKEIKEIAG-KSPITIAVVSI 282 (345)
T ss_dssp HHHHHHHHCC----------------------------------------------------------------------
T ss_pred HHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhcccccC-CChHHHHHHHH
Confidence 9999999999864 667899999999998854 667788899999887766544455 89999999999
Q ss_pred HHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHH
Q 013740 364 YAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFH 402 (437)
Q Consensus 364 ~lA~~~l~~~~~W~~~L~~~tgys~~eL~~c~~~L~~l~ 402 (437)
|+|....+.. .-...+...+|+++..|+..++.|.+..
T Consensus 283 ylAa~l~g~~-~t~~eIa~v~~Vse~TIr~rykel~~~~ 320 (345)
T 4bbr_M 283 YLNILLFQIP-ITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHhCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9998877742 2345678889999999999998887653
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.35 E-value=2e-06 Score=84.32 Aligned_cols=106 Identities=9% Similarity=0.070 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcc---ccccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchH
Q 013740 216 ILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMK---TVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGS 292 (437)
Q Consensus 216 ~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~---~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~ 292 (437)
.+-+||..+...-.++++++-.|..|+||+.... .+...+.+-+-++||++|+|+-+.....-..+..+ +.++.+
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV--gGisl~ 153 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV--GGVRCH 153 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH--HTSCHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc--cCcCHH
Confidence 4668999999999999999999999999998753 45667888899999999999977767777777777 458999
Q ss_pred HHHHHHHHHHHHhCCcccCCchhhHHHHHHHh
Q 013740 293 QVLVMEKAILEKLGWYLTVPTPYVFLVRYVKA 324 (437)
Q Consensus 293 eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~ 324 (437)
|+-.||+..|..|+|+|.++ +..|..+|+..
T Consensus 154 ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 99999999999999999765 55666666554
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.52 E-value=0.01 Score=54.25 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHHHHH
Q 013740 219 DWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVME 298 (437)
Q Consensus 219 dWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE 298 (437)
++|..++..++++.++.-.|..++.+.+....+.......++++|+++||+.... +.+.+++..+++ ++..+|...=
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~--vs~~ti~~~~ 186 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTVRNRY 186 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC--CCHHHHHHHH
Confidence 5677888999999999999999999999887788889999999999999998663 557889888776 6889999999
Q ss_pred HHHHHHhCCcc
Q 013740 299 KAILEKLGWYL 309 (437)
Q Consensus 299 ~~IL~~L~f~L 309 (437)
+.|.+.|+..+
T Consensus 187 ~~l~~~l~~~~ 197 (200)
T 1ais_B 187 KELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHcCCCC
Confidence 99999998655
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.75 E-value=0.23 Score=45.44 Aligned_cols=86 Identities=12% Similarity=0.056 Sum_probs=66.6
Q ss_pred hhhHHHHHHHhcCCCChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHH
Q 013740 314 PYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKD 393 (437)
Q Consensus 314 p~~FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tgys~~eL~~ 393 (437)
.+.++..+..... -.+.+...|..+....+....+-. +++..+|+||+|+|.+.-+. |.-...+...++++..+|..
T Consensus 8 a~~~I~~~~~~L~-L~~~v~~~A~~~~~r~~~~~~~~~-~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~~~~~~i~~ 84 (207)
T 1c9b_A 8 AFKEITTMADRIN-LPRNIVDRTNNLFKQVYEQKSLKG-RANDAIASACLYIACRQEGV-PRTFKEICAVSRISKKEIGR 84 (207)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHTCSTT-SCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSSSCHHHHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCcCC-CCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHCCCHHHHHH
Confidence 4567777776644 566777888878777776555555 99999999999999988776 45567888899999999999
Q ss_pred HHHHHHHHH
Q 013740 394 CAKLLVSFH 402 (437)
Q Consensus 394 c~~~L~~l~ 402 (437)
+.+.|+...
T Consensus 85 ~~~~ll~~L 93 (207)
T 1c9b_A 85 CFKLILKAL 93 (207)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 988777643
No 22
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=87.89 E-value=0.84 Score=42.52 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHHHHH
Q 013740 219 DWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVME 298 (437)
Q Consensus 219 dWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE 298 (437)
++|......++++.++.-+|.++++.-+....+-......||++|+++|+++.....| .+-.... .++.++|...-
T Consensus 136 ~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~--~~~~~~~--~~~~~~i~~~~ 211 (235)
T 1zp2_A 136 TSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP--KLLDLIK--STDAFKVILCV 211 (235)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHH--HHHHHCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCC--CCcchhh--cCCHHHHHHHH
Confidence 3455555678899999999999999887666667778889999999999998553211 1111222 67888888888
Q ss_pred HHHHHHhC
Q 013740 299 KAILEKLG 306 (437)
Q Consensus 299 ~~IL~~L~ 306 (437)
..|+....
T Consensus 212 ~~i~~ly~ 219 (235)
T 1zp2_A 212 QRIISIYY 219 (235)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88887653
No 23
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=86.96 E-value=2 Score=40.36 Aligned_cols=87 Identities=9% Similarity=0.063 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhh-hccccccccchhhHhHHHHhhhcccccCCCCh---hhHHHhhccccchHHH
Q 013740 219 DWLIEVHNKFKLMPETLYLTVNILDRYL-SMKTVNRRELQLVGISSMLIACKYEEIWAPQV---NDFICISDYAYIGSQV 294 (437)
Q Consensus 219 dWLieV~~~f~L~~eTl~lAV~~lDRfL-s~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v---~dlv~is~~~yt~~eI 294 (437)
++|......++.+.++..+|.+++..-+ .....-......+|++|+++|+++-....|.. ..+....+..++.++|
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l 227 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELL 227 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHH
Confidence 4555666778888898899998885544 23334556778999999999999855433321 1122222335789999
Q ss_pred HHHHHHHHHHh
Q 013740 295 LVMEKAILEKL 305 (437)
Q Consensus 295 l~mE~~IL~~L 305 (437)
..+-..|++.+
T Consensus 228 ~~~~~~i~~~~ 238 (257)
T 2ivx_A 228 DELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 24
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=84.88 E-value=5.2 Score=39.73 Aligned_cols=86 Identities=7% Similarity=-0.014 Sum_probs=63.4
Q ss_pred chhhHHHHHHHhcCCCChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHH
Q 013740 313 TPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLK 392 (437)
Q Consensus 313 Tp~~FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tgys~~eL~ 392 (437)
..+..|..+..... ....+...|..+...++. ..++...+...+||||||+|.+..+. |.-...+...++++..+|.
T Consensus 128 ~a~~~I~~~~~~L~-Lp~~v~d~A~~lyk~a~~-~~~~rGrs~e~vaAAclYiACR~~~~-prtl~eI~~~~~v~~keig 204 (345)
T 4bbr_M 128 AAFAKITMLCDAAE-LPKIVKDCAKEAYKLCHD-EKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIHVKTKEFG 204 (345)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHTT-CTTTTTCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHh-cCCccCCCHHHHHHHHHHHHHHhcCC-CccHHHHHHHhCCCHHHHH
Confidence 34555666666543 455677778877776554 45555588999999999999887664 4445677888999999999
Q ss_pred HHHHHHHHH
Q 013740 393 DCAKLLVSF 401 (437)
Q Consensus 393 ~c~~~L~~l 401 (437)
.+++.|...
T Consensus 205 r~~k~l~~~ 213 (345)
T 4bbr_M 205 KTLNIMKNI 213 (345)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999988754
No 25
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=84.73 E-value=6.6 Score=37.22 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhC--CCHHHHHHH
Q 013740 317 FLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTG--YSEEQLKDC 394 (437)
Q Consensus 317 FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tg--ys~~eL~~c 394 (437)
||........ ...+...+|-.+++..+....+-. ...-.+|+||+++|.+.-+..+.-...+...++ |+.++|..+
T Consensus 44 wl~~v~~~~~-l~~~tl~lAv~~lDRfl~~~~v~~-~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~m 121 (269)
T 2b9r_A 44 WLVQVQMKFR-LLQETMYMTVSIIDRFMQNNSVPK-KMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQM 121 (269)
T ss_dssp HHHHHHHHTT-CCHHHHHHHHHHHHHHHTTSCCCG-GGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCcH-HHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHH
Confidence 4444443322 456666777777777666555545 778899999999999988864444566777774 799999988
Q ss_pred HHHHHHH
Q 013740 395 AKLLVSF 401 (437)
Q Consensus 395 ~~~L~~l 401 (437)
-..|+..
T Consensus 122 E~~IL~~ 128 (269)
T 2b9r_A 122 EMKILRA 128 (269)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 26
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=84.27 E-value=1.9 Score=40.37 Aligned_cols=88 Identities=9% Similarity=0.060 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCh----HHHHHHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCC----h--hhHHHhhccc
Q 013740 219 DWLIEVHNKFKLMP----ETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQ----V--NDFICISDYA 288 (437)
Q Consensus 219 dWLieV~~~f~L~~----eTl~lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~----v--~dlv~is~~~ 288 (437)
++|...+..++.+. ++..+|.++++.-+.....-......+|++|+++|+++-....|. . ..+.......
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~ 232 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQD 232 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSS
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccC
Confidence 56777778888876 578889999988877666677788899999999999985442221 1 1111111235
Q ss_pred cchHHHHHHHHHHHHHhC
Q 013740 289 YIGSQVLVMEKAILEKLG 306 (437)
Q Consensus 289 yt~~eIl~mE~~IL~~L~ 306 (437)
++.++|..+-..|++..+
T Consensus 233 ~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 233 VPVDVLEDICHQILDLYS 250 (258)
T ss_dssp CCHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 889999999888887654
No 27
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=84.23 E-value=26 Score=32.44 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcc---ccccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchH
Q 013740 216 ILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMK---TVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGS 292 (437)
Q Consensus 216 ~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~---~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~ 292 (437)
.+.+-|..++.+-.++..+|--||.+--.|.-.. ...-++-|-|+++|++||+- +-..|..+.++..+ |.+..
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae-~~~~PiplaE~r~l-D~sL~-- 89 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAE-EAQQPLPLAEVRCL-DSSLG-- 89 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH-HTTCCCCHHHHHHH-CTTCC--
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHH-HcCCCccHHHHHHH-hhhhh--
Confidence 3456668999999999999999999999988654 55667789999999999996 44467778887654 44444
Q ss_pred HHHHHHHHHHHHhCC
Q 013740 293 QVLVMEKAILEKLGW 307 (437)
Q Consensus 293 eIl~mE~~IL~~L~f 307 (437)
||.---.+|++.|+-
T Consensus 90 Dvelrr~Eiv~~l~l 104 (260)
T 3h4c_A 90 DVELRRADIVRELHL 104 (260)
T ss_dssp CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccC
Confidence 333333445666654
No 28
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=82.56 E-value=1.7 Score=43.43 Aligned_cols=87 Identities=10% Similarity=0.082 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhhh-ccccccccchhhHhHHHHhhhcccccCCCCh---hhHHHhhccccchHHH
Q 013740 219 DWLIEVHNKFKLMPETLYLTVNILDRYLS-MKTVNRRELQLVGISSMLIACKYEEIWAPQV---NDFICISDYAYIGSQV 294 (437)
Q Consensus 219 dWLieV~~~f~L~~eTl~lAV~~lDRfLs-~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v---~dlv~is~~~yt~~eI 294 (437)
+||......++.+.++..+|.+++..-+. ....-......||++||++|+++-....|.- ..+....+..++.++|
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l 234 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELL 234 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHH
Confidence 35555666778888888999998866553 3334556778999999999999865433211 1122222345788999
Q ss_pred HHHHHHHHHHh
Q 013740 295 LVMEKAILEKL 305 (437)
Q Consensus 295 l~mE~~IL~~L 305 (437)
..+-..|+..+
T Consensus 235 ~~i~~~il~~y 245 (358)
T 2pk2_A 235 DELTHEFLQIL 245 (358)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 29
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=81.93 E-value=9.8 Score=35.96 Aligned_cols=71 Identities=24% Similarity=0.163 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhC--CCHHHHHHHHHHHHHH
Q 013740 330 QEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTG--YSEEQLKDCAKLLVSF 401 (437)
Q Consensus 330 ~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tg--ys~~eL~~c~~~L~~l 401 (437)
.+...+|-.+++-.+.-..+-. ...-.+|+||+|+|.+.-+..|.-...+...++ |+.++|..+-..|+..
T Consensus 75 ~~tl~lAv~~lDRfls~~~v~~-~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~ 147 (271)
T 2w96_A 75 EEVFPLAMNYLDRFLSLEPVKK-SRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNK 147 (271)
T ss_dssp TTHHHHHHHHHHHHHTTSCCCT-TTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCcCCcCH-HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3444555555555454444444 778899999999999988874444556666664 7999998876666643
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=80.81 E-value=7.6 Score=36.51 Aligned_cols=74 Identities=14% Similarity=0.049 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhh--CCCHHHHHHHHHHHHHHH
Q 013740 328 PDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHT--GYSEEQLKDCAKLLVSFH 402 (437)
Q Consensus 328 ~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~t--gys~~eL~~c~~~L~~l~ 402 (437)
...+...+|-.+++..+.-..+-. ...-.+|+||+++|.+.-+..+.-...+...+ .|+.++|..+-..|+...
T Consensus 55 l~~~tl~lAv~~lDRfls~~~v~~-~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L 130 (260)
T 2cch_B 55 LQNETLHLAVNYIDRFLSSMSVLR-GKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVL 130 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhccCCCCH-HHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHc
Confidence 344555555555555444333333 55778999999999998887444556666677 489999998877766543
No 31
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=80.22 E-value=14 Score=35.31 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhh------------
Q 013740 317 FLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHT------------ 384 (437)
Q Consensus 317 FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~t------------ 384 (437)
||........ ..+.+..+|..+.+-.+....+.. +.+-.||+||||+|.+.-+..+.-...+...+
T Consensus 49 ~I~~v~~~l~-L~~~t~~tA~~~~~RF~~~~s~~~-~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~ 126 (285)
T 3rgf_B 49 VIQALGEHLK-LRQQVIATATVYFKRFYARYSLKS-IDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAF 126 (285)
T ss_dssp HHHHHHHHTT-CCHHHHHHHHHHHHHHHHHSCTTT-SCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHHHHHhCCchh-cCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccC
Confidence 4444443332 566677777777777777666666 99999999999999988775432222332221
Q ss_pred ----CCCHHHHHHHHHHHHHH
Q 013740 385 ----GYSEEQLKDCAKLLVSF 401 (437)
Q Consensus 385 ----gys~~eL~~c~~~L~~l 401 (437)
.++.++|..+=..|+..
T Consensus 127 ~~~~~~~~~~Il~~E~~iL~~ 147 (285)
T 3rgf_B 127 PKEFPYRMNHILECEFYLLEL 147 (285)
T ss_dssp CSCCCCCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 25678888776666643
No 32
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=78.82 E-value=10 Score=35.48 Aligned_cols=73 Identities=16% Similarity=0.077 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhC--CCHHHHHHHHHHHHHH
Q 013740 328 PDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTG--YSEEQLKDCAKLLVSF 401 (437)
Q Consensus 328 ~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tg--ys~~eL~~c~~~L~~l 401 (437)
...+.-.+|-.+++-.+....+-. ...-.+|+||+++|.+.-+..+.-...+...++ |+.++|..+=..|+..
T Consensus 67 l~~etl~lAv~~~DRfls~~~v~~-~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~ 141 (257)
T 1g3n_C 67 LEPNVVALALNLLDRLLLIKQVSK-EHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEK 141 (257)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCCCH-HHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 445555666666666554444333 567799999999999987764444566666764 8999998876665543
No 33
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=77.79 E-value=1.6 Score=43.30 Aligned_cols=87 Identities=7% Similarity=-0.032 Sum_probs=62.3
Q ss_pred hhhHHHHHHHhcCCCChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHH
Q 013740 314 PYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKD 393 (437)
Q Consensus 314 p~~FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tgys~~eL~~ 393 (437)
.+.+|..+..... ..+.+...|..|...++. ..++...+...||+||||+|.+..+. |.-...+...++++..+|..
T Consensus 129 a~~~I~~~~~~L~-Lp~~v~d~A~~lyk~~~~-~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~v~~keIgr 205 (345)
T 3k7a_M 129 AFAKITMLCDAAE-LPKIVKDCAKEAYKLCHD-EKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIHVKTKEFGK 205 (345)
T ss_dssp HHHHHHHHHHHTT-CCHHHHTHHHHHHHHHSS-SCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSSCCSHHHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHh-cCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHCCCHHHHHH
Confidence 3455666665543 455566677777766554 34444488999999999999876554 44556788889999999999
Q ss_pred HHHHHHHHHH
Q 013740 394 CAKLLVSFHL 403 (437)
Q Consensus 394 c~~~L~~l~~ 403 (437)
+.+.|...+.
T Consensus 206 ~~~~l~~~L~ 215 (345)
T 3k7a_M 206 TLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9998887543
No 34
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=77.21 E-value=12 Score=35.03 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhC--CCHHHHHHHHHHHHHH
Q 013740 328 PDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTG--YSEEQLKDCAKLLVSF 401 (437)
Q Consensus 328 ~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tg--ys~~eL~~c~~~L~~l 401 (437)
...+.-.+|-.+++-.+.-...-. ...-.+|+||+++|.+.-+..+.-...+...++ |+.++|..+=..|+..
T Consensus 68 l~~etl~lAv~~~DRfls~~~v~~-~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~ 142 (254)
T 2f2c_A 68 LDKSVFPLSVSILDRYLCKKQGTK-KTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEA 142 (254)
T ss_dssp CCTTHHHHHHHHHHHHTTTSCCCT-TTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHccCCcCH-HHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 455666777777777665555444 788899999999999987754444555656653 7889998876666644
No 35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=75.33 E-value=14 Score=35.82 Aligned_cols=71 Identities=25% Similarity=0.182 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhC--CCHHHHHHHHHHHHHH
Q 013740 330 QEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTG--YSEEQLKDCAKLLVSF 401 (437)
Q Consensus 330 ~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tg--ys~~eL~~c~~~L~~l 401 (437)
.++..+|-.+++..+.-..+-. ...-.+|++|+++|.+.-...+.-...+...++ |+.++|..+=..|+..
T Consensus 89 ~~t~~lAv~~lDRfls~~~v~~-~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~ 161 (306)
T 3g33_B 89 EEVFPLAMNYLDRYLSCVPTRK-AQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGK 161 (306)
T ss_dssp TTHHHHHHHHHHHHHHHCCCCG-GGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHH
Confidence 3344444444444443333334 678899999999999987765544556666665 7899998876666543
No 36
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=73.14 E-value=21 Score=33.94 Aligned_cols=73 Identities=11% Similarity=0.012 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHHhcc-hhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhh--CCCHHHHHHHHHHHHHHH
Q 013740 329 DQEMENLVFFLAELGISH-YPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHT--GYSEEQLKDCAKLLVSFH 402 (437)
Q Consensus 329 ~~~l~~la~yl~ELsL~d-~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~t--gys~~eL~~c~~~L~~l~ 402 (437)
..+.-.+|-.+++-.+.- ...-. ...-.+|+||+++|.+.-+..+.-...+...+ .|+.++|..+-..|+...
T Consensus 67 ~~~tl~lAv~~lDRfls~~~~v~~-~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L 142 (283)
T 1w98_B 67 HRETFYLAQDFFDRYMATQENVVK-TLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKAL 142 (283)
T ss_dssp BHHHHHHHHHHHHHHHHHCCCCCG-GGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 444444554455444432 12233 67889999999999998876444456666766 489999998776666543
No 37
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=71.26 E-value=28 Score=33.85 Aligned_cols=88 Identities=10% Similarity=0.013 Sum_probs=61.5
Q ss_pred chhhHHHHHHHhcCCCChHHHHHHHHHHH-HHhcchhh-hccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHH
Q 013740 313 TPYVFLVRYVKASVSPDQEMENLVFFLAE-LGISHYPT-VICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQ 390 (437)
Q Consensus 313 Tp~~FL~~fl~~~~~~~~~l~~la~yl~E-LsL~d~~~-l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tgys~~e 390 (437)
+.+.||.++.+... ......-++.++++ +......+ +......-|-.+|+.+|.+.++....|+..+..+.|++..|
T Consensus 76 SI~~Yl~RI~k~t~-ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~E 154 (293)
T 2pmi_B 76 SIFNYFIRLTKFSS-LEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHE 154 (293)
T ss_dssp CHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHH
T ss_pred cHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHH
Confidence 45678888888765 44555444444444 33222222 22367888999999999999998778899999999999999
Q ss_pred HHHHHHHHHHH
Q 013740 391 LKDCAKLLVSF 401 (437)
Q Consensus 391 L~~c~~~L~~l 401 (437)
|...=..++.+
T Consensus 155 LN~LE~eFL~l 165 (293)
T 2pmi_B 155 LNILENDFLKR 165 (293)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88765555543
No 38
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=62.29 E-value=56 Score=31.67 Aligned_cols=71 Identities=11% Similarity=0.053 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCC-------HHHHHHHHHHHHH
Q 013740 328 PDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYS-------EEQLKDCAKLLVS 400 (437)
Q Consensus 328 ~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tgys-------~~eL~~c~~~L~~ 400 (437)
..+.+..+|..+.+-.+....+.. +.|-.||+||||+|.+.-+..+. ...+...+.-+ .++|..+=..|+.
T Consensus 75 Lp~~t~~tA~~~~~RF~~~~s~~~-~~~~lva~acLfLA~K~EE~~~~-l~d~v~~~~~~p~~~~~~~~~Il~~E~~iL~ 152 (323)
T 1jkw_A 75 MPRSVVGTACMYFKRFYLNNSVME-YHPRIIMLTCAFLACKVDEFNVS-SPQFVGNLRESPLGQEKALEQILEYELLLIQ 152 (323)
T ss_dssp CCHHHHHHHHHHHHHHGGGSCTTT-SCHHHHHHHHHHHHHHHTTCCCC-HHHHGGGSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhCChhh-cCHHHHHHHHHHHHHhhhcCCCC-HHHHHHHhccChhhhHHHHHHHHHHHHHHHH
Confidence 345666777777777777666666 99999999999999988776432 33333333222 4556665544443
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=53.80 E-value=83 Score=29.38 Aligned_cols=71 Identities=13% Similarity=-0.055 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhh--CCCHHHHHHHHHHHHH
Q 013740 329 DQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHT--GYSEEQLKDCAKLLVS 400 (437)
Q Consensus 329 ~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~t--gys~~eL~~c~~~L~~ 400 (437)
..+.-.+|-.+++--+.-...-. ...-.+|++|+++|.+.-...|.-...+..++ .|+.++|...=..++.
T Consensus 66 ~~eT~~lAv~~lDRfLs~~~v~~-~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~ 138 (252)
T 1f5q_B 66 DNNVFPLAVALLDELFLSTRIDR-ENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLD 138 (252)
T ss_dssp CTTHHHHHHHHHHHHHHHSCCCG-GGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 34444455444444443333333 55778999999999998876555556666666 4688888875544443
No 40
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=42.16 E-value=16 Score=31.88 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=32.4
Q ss_pred CCChHHHH---HHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHH
Q 013740 229 KLMPETLY---LTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQV 294 (437)
Q Consensus 229 ~L~~eTl~---lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eI 294 (437)
++.+++++ +|-+|||- -.|+-++|-++|..+....+-.+..+..+.+ -||.++-
T Consensus 92 ~vd~~~l~eLi~AAnyL~I-----------~~Lldl~c~~vA~~ikgkt~eeir~~f~I~n-d~t~eEe 148 (160)
T 2p1m_A 92 KIDQATLFELILAANYLNI-----------KNLLDLTCQTVADMIKGKTPEEIRTTFNIKN-DFTPEEE 148 (160)
T ss_dssp ---------CHHHHHHTTC-----------HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCC-CCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 35555554 56666664 3578999999999997765555666666644 4787654
No 41
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=39.59 E-value=29 Score=30.02 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=38.2
Q ss_pred cCCChHHHH---HHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHH
Q 013740 228 FKLMPETLY---LTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVL 295 (437)
Q Consensus 228 f~L~~eTl~---lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl 295 (437)
+++..++++ +|-+|||- -.|+-++|-++|..+....+-.+..+..+.+ -||.++-.
T Consensus 92 ~~id~~~l~eLl~AAnyL~I-----------~~Lld~~c~~va~~i~gkt~eeir~~f~I~~-d~t~eEe~ 150 (159)
T 2ast_A 92 LKVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNIKN-DFTEEEEA 150 (159)
T ss_dssp TCSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHSSCCHHHHHHHTTCCC-CSCTTHHH
T ss_pred HcCCHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHHH
Confidence 356777664 35556553 3578899999999998876656666666643 47877643
No 42
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=31.43 E-value=36 Score=30.02 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=39.5
Q ss_pred cCCChHHHH---HHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHH
Q 013740 228 FKLMPETLY---LTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVL 295 (437)
Q Consensus 228 f~L~~eTl~---lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl 295 (437)
+++.++++| +|-+|||- -.|+-++|-.+|..+....|-.++.+..+.+ -||.++-.
T Consensus 99 l~vd~~~LfeLi~AAnyLdI-----------k~Lldl~c~~vA~~ikgktpeeiR~~f~I~n-d~t~eEe~ 157 (169)
T 3v7d_A 99 LKVDQEMLYEIILAANYLNI-----------KPLLDAGCKVVAEMIRGRSPEEIRRTFNIVN-DFTPEEEA 157 (169)
T ss_dssp TCSCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCC-CCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHHH
Confidence 467777765 46666654 3578999999999988776656777766654 48877643
No 43
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=27.80 E-value=45 Score=28.31 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=31.2
Q ss_pred cCCChHHHH---HHHHHHHHhhhccccccccchhhHhHHHHhhhcccccCCCChhhHHHh
Q 013740 228 FKLMPETLY---LTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICI 284 (437)
Q Consensus 228 f~L~~eTl~---lAV~~lDRfLs~~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~i 284 (437)
+++.+++++ +|-+|||- -.|+-++|-++|..+....+-.++.+..+
T Consensus 87 ~~vd~~~l~eLi~AAnyL~I-----------~~Lldl~c~~vA~~ikgkt~eeiR~~f~I 135 (141)
T 1fs1_B 87 LKVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNI 135 (141)
T ss_dssp TCSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHTC-
T ss_pred HhCCHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHcCCCHHHHHHHcCC
Confidence 467888775 56777764 46788999999999877554444444433
No 44
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=26.25 E-value=1.2e+02 Score=29.56 Aligned_cols=65 Identities=8% Similarity=-0.053 Sum_probs=45.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhhhc----cccccccchhhHhHHHHhhhcccccCCCChhhHHHhhc
Q 013740 221 LIEVHNKFKLMPETLYLTVNILDRYLSM----KTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISD 286 (437)
Q Consensus 221 LieV~~~f~L~~eTl~lAV~~lDRfLs~----~~V~~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~ 286 (437)
..++|+.++++..|.-.|..++.+.-+. .....+ -+..-.+|||+|+.-.|....++.+++..++
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 4578999999999999999999996653 123333 3344445599999876667777888776654
No 45
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=24.31 E-value=2.1e+02 Score=23.00 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=37.7
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHH
Q 013740 353 YCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFH 402 (437)
Q Consensus 353 ~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tgys~~eL~~c~~~L~~l~ 402 (437)
+.--.-+++|+|.+.+.+.... =...|...+|.+..++..+...+-.+.
T Consensus 43 ~s~P~f~aaA~~~acr~~K~kV-dK~KL~~~s~lk~~~f~~l~~~~e~~~ 91 (95)
T 3m03_A 43 LSRPLFTSAALLSACKILKLKV-DKNKMVATSGVKKAIFDRLCKQLEKIG 91 (95)
T ss_dssp TTSHHHHHHHHHHHHHHTTCCC-CHHHHHHTTCBCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHccCC-CHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4445667788999988777543 256788999999999999888887664
Done!